Citrus Sinensis ID: 046828
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | 2.2.26 [Sep-21-2011] | |||||||
| Q9H6U6 | 928 | Breast carcinoma-amplifie | yes | no | 0.583 | 0.394 | 0.277 | 6e-38 | |
| Q8CCN5 | 928 | Breast carcinoma-amplifie | yes | no | 0.590 | 0.398 | 0.275 | 7e-38 | |
| Q8SY41 | 1122 | Breast carcinoma-amplifie | yes | no | 0.430 | 0.240 | 0.283 | 4e-25 | |
| P43601 | 500 | Autophagy-related protein | yes | no | 0.395 | 0.496 | 0.251 | 5e-10 | |
| A7A258 | 500 | Autophagy-related protein | N/A | no | 0.395 | 0.496 | 0.251 | 5e-10 | |
| Q4P4N1 | 453 | Autophagy-related protein | N/A | no | 0.197 | 0.273 | 0.347 | 6e-10 | |
| Q75F47 | 537 | Autophagy-related protein | yes | no | 0.406 | 0.474 | 0.240 | 5e-09 | |
| Q6FM63 | 505 | Autophagy-related protein | yes | no | 0.413 | 0.512 | 0.217 | 6e-08 | |
| Q6C044 | 400 | Autophagy-related protein | yes | no | 0.224 | 0.352 | 0.287 | 1e-07 | |
| Q6CS21 | 500 | Autophagy-related protein | yes | no | 0.395 | 0.496 | 0.248 | 4e-07 |
| >sp|Q9H6U6|BCAS3_HUMAN Breast carcinoma-amplified sequence 3 OS=Homo sapiens GN=BCAS3 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 128/461 (27%), Positives = 207/461 (44%), Gaps = 95/461 (20%)
Query: 60 ELKDQVLWSSFDKLELSPSS----FKHV----------LLLGYSNGFQVLDVEDATNVSE 105
E K++++W F+ +L+ +S F + +++GYS+G QV + + E
Sbjct: 55 EEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPPLLIMIGYSDGMQVWSIPISGEAQE 114
Query: 106 LVSRRDDPVTFLQMQPLPA-KSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVR 164
L S R P+ ++ P P + + F PLL V C +SG
Sbjct: 115 LFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGV--CKSIGSSG------------- 159
Query: 165 DGYDEPQPGNVAMSP--TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYC 222
SP V YSLR+ V ++F++ +Y + C+ RI+ V L +I
Sbjct: 160 ------------TSPPYCCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAA 207
Query: 223 FDALTLESKFSVLT-YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSP 281
FD+ T KF V + YP P G N+ P+A+G RWLAYA N + + R
Sbjct: 208 FDSCTFTKKFFVTSCYPCP--------GPNM--NPIALGSRWLAYAENKLIRCHQSR--- 254
Query: 282 QSLTPPSVSPSTSPSNGNLMARYA---VESSKQLAAGLINLGDMGYKTLSRYYQDFIPDG 338
+ G+ + Y + ++K L +GL +G + + D
Sbjct: 255 ------------GGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDD 302
Query: 339 SSSPVSSNSSWK---AGRNASHSSDTDIAGMVVV-KDIVSRSVISQFRAHTSPISALCFD 394
+ + SNS G ++T G V+V +D S +++ F AH P+ + F+
Sbjct: 303 VA--IHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN 360
Query: 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV---HLYKLHRGMTSAV 451
SG LLVT G++ ++F+I+ T+ W+SS HLY LHRG T A
Sbjct: 361 TSGMLLVTTDTLGHDFHVFQIL-------------THPWSSSQCAVHHLYTLHRGETEAK 407
Query: 452 IQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492
+QDICFSH +W+ + + RGT H+F + P+GG+ ++ S
Sbjct: 408 VQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMS 448
|
Homo sapiens (taxid: 9606) |
| >sp|Q8CCN5|BCAS3_MOUSE Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 126/457 (27%), Positives = 205/457 (44%), Gaps = 87/457 (19%)
Query: 60 ELKDQVLWSSFDKLELSPSS----FKHV----------LLLGYSNGFQVLDVEDATNVSE 105
E K++++W F+ +L+ +S F + +++GYS+G QV + + E
Sbjct: 55 EEKEKIVWVRFENADLNDTSRNLEFHELHSTGNEPPLLVMIGYSDGMQVWGIPISGEAQE 114
Query: 106 LVSRRDDPVTFLQMQPLPA-KSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVR 164
L S R PV ++ P P + + F PLL V C +SG +
Sbjct: 115 LFSVRHGPVRAARILPAPQLGAQKCDNFAEKRPLLGV--CKSIGSSGTTPPYC------- 165
Query: 165 DGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFD 224
V YSLR+ V ++F++ +Y + C+ RI+ V L +I FD
Sbjct: 166 ----------------CVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFD 209
Query: 225 ALTLESKFSVLT-YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQS 283
+ T KF V + YP P G N+ P+A+G RWLAYA N + + R
Sbjct: 210 SCTFTKKFFVTSCYPCP--------GPNM--NPIALGSRWLAYAENKLIRCHQSR----- 254
Query: 284 LTPPSVSPSTSPSNGNLMARYA---VESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSS 340
+ G+ + Y + ++K L +GL +G + + D +
Sbjct: 255 ----------GGACGDNIQSYTATVLSAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVA 304
Query: 341 SPVSSNSS-WKAGRNASHSSDTDIAGMVVV-KDIVSRSVISQFRAHTSPISALCFDRSGT 398
+S S G ++T G V+V +D S +++ F AH P+ + F+ SG
Sbjct: 305 LHCNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGM 364
Query: 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV---HLYKLHRGMTSAVIQDI 455
LLVT G++ ++F+I+ T+ W+SS HLY LHRG T A +QDI
Sbjct: 365 LLVTTDTLGHDFHVFQIL-------------THPWSSSQCAVHHLYTLHRGETEAKVQDI 411
Query: 456 CFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492
CFSH +W+ + + RGT H+F + P+GG+ ++ S
Sbjct: 412 CFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMS 448
|
Mus musculus (taxid: 10090) |
| >sp|Q8SY41|BCAS3_DROME Breast carcinoma-amplified sequence 3 homolog OS=Drosophila melanogaster GN=CG43154 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 154/339 (45%), Gaps = 69/339 (20%)
Query: 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLT-YP 238
+AV F SL++ V ++F++ V ++ + V + +I FDA TLE + ++ T YP
Sbjct: 229 SAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLEDRLTITTCYP 288
Query: 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNG 298
P G+N P+A+GPRWLAYA + L PS + +T +
Sbjct: 289 SP--------GIN--PNPIALGPRWLAYAEHKLLHSKRSGGGCDGEGVPSYT-ATVLNAA 337
Query: 299 NLMARYAVESSKQLAAGLINL-------------------------GDMGYKTLSRYYQD 333
+++ E +Q+AAGL G + + +D
Sbjct: 338 KSLSKGLREFGEQVAAGLTGTTAGSGASSKSSSFDSASGGPDAKQSGVVTIIDVKHPVKD 397
Query: 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393
+ P S +P+SS + + G + +++ F AH+ + A+ F
Sbjct: 398 YSPT-SGTPLSSTAGSQGGGDP---------------------IVAHFVAHSEALVAMEF 435
Query: 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453
D SG LL+TA G++ ++FR+ P G S +A HLY LHRG TSA +Q
Sbjct: 436 DSSGMLLLTADRRGHDFHVFRVQPHPV-GPSLAAVH---------HLYVLHRGDTSAKVQ 485
Query: 454 DICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492
I FS S+W A+ + RGT H+F +TP+GG ++ S
Sbjct: 486 HIAFSLDSRWAAVSTLRGTTHVFPITPYGGAMGVRTHTS 524
|
Drosophila melanogaster (taxid: 7227) |
| >sp|P43601|ATG18_YEAST Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG18 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 125/306 (40%), Gaps = 58/306 (18%)
Query: 176 AMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVL 235
A+SP +R + + H+ + + F +++ V+ + + V L QIY +D T+ ++
Sbjct: 69 ALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIE 128
Query: 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295
T P P G MA+ P + A++ + P SP + + +
Sbjct: 129 TNPNPR-------------GLMAMSP---SVANSYLVYP-----SPPKVINSEIKAHATT 167
Query: 296 SNGNLMARYAVESS---KQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAG 352
+N L E+S Q AG ++ D+ Y F + P SSN G
Sbjct: 168 NNITLSVGGNTETSFKRDQQDAGHSDISDLD------QYSSFTKRDDADPTSSN-----G 216
Query: 353 RNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINI 412
N+S + D V+V ++ + AH I+A+ GTL+ TAS G I +
Sbjct: 217 GNSSIIKNGD----VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRV 272
Query: 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472
F I +T D +Y+ RG + I I FS SQ++A+ S T
Sbjct: 273 FDI-------------ETGD------KIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKT 313
Query: 473 CHIFVL 478
HIF L
Sbjct: 314 VHIFKL 319
|
The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). May negatively regulate FAB1 activity by sequestering or masking VAC7 from FAB1. Necessary for proper vacuole morphology. Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|A7A258|ATG18_YEAS7 Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 125/306 (40%), Gaps = 58/306 (18%)
Query: 176 AMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVL 235
A+SP +R + + H+ + + F +++ V+ + + V L QIY +D T+ ++
Sbjct: 69 ALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIE 128
Query: 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295
T P P G MA+ P + A++ + P SP + + +
Sbjct: 129 TNPNPR-------------GLMAMSP---SVANSYLVYP-----SPPKVINSEIKAHATT 167
Query: 296 SNGNLMARYAVESS---KQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAG 352
+N L E+S Q AG ++ D+ Y F + P SSN G
Sbjct: 168 NNITLSVGGNTETSFKRDQQDAGHSDISDLD------QYSSFTKRDDADPTSSN-----G 216
Query: 353 RNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINI 412
N+S + D V+V ++ + AH I+A+ GTL+ TAS G I +
Sbjct: 217 GNSSIIKNGD----VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRV 272
Query: 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472
F I +T D +Y+ RG + I I FS SQ++A+ S T
Sbjct: 273 FDI-------------ETGD------KIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKT 313
Query: 473 CHIFVL 478
HIF L
Sbjct: 314 VHIFKL 319
|
Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication. Saccharomyces cerevisiae (strain YJM789) (taxid: 307796) |
| >sp|Q4P4N1|ATG18_USTMA Autophagy-related protein 18 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 20/144 (13%)
Query: 341 SPVSSNSSWKAGRNASHSSDTDI-AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTL 399
SPV+S +S + AS S++ + AG V++ D++S SV + +AH +PISAL + +GTL
Sbjct: 161 SPVASPTSPFSNSGASSSAEANTTAGDVLIFDLLSLSVTNVIQAHKTPISALALNATGTL 220
Query: 400 LVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH 459
L TAS G I +F I P++ K L++ RG +A I + F+
Sbjct: 221 LATASDKGTVIRVFSI-PAAQK------------------LHQFRRGSYAARIYSLNFNA 261
Query: 460 YSQWIAIVSSRGTCHIFVLTPFGG 483
S +A+ S T HIF L+ G
Sbjct: 262 VSTLLAVSSDTETVHIFKLSSGAG 285
|
Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
| >sp|Q75F47|ATG18_ASHGO Autophagy-related protein 18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 124/316 (39%), Gaps = 61/316 (19%)
Query: 174 NVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFS 233
N +MSP +R + + H+ + + F +T+ V+ + + V L QIY +D ++ ++
Sbjct: 68 NPSMSPRRLRILNTKRHSVICEVTFPTTILAVKMNRSRLVVLLQEQIYIYDINSMRLLYT 127
Query: 234 VLTYPVPHFGGQGTSGVNIGYGPMAVGP----RWLAYASNNPLLPNTGRLSPQSLTPPSV 289
+ T P G +++ P +LAY S PP V
Sbjct: 128 IETSSNPR-------------GLISMSPSLENNYLAYPS-----------------PPKV 157
Query: 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTL---SRYYQDF--IPDGSSSPVS 344
S SN N + + +A G D G + L S+ D + + + +S
Sbjct: 158 INSGIKSNAN-TNNIGISARSSIAEGGSEYLDKGTEPLTDSSKAGADLNSVKASTETTIS 216
Query: 345 SNSSWKAGR--NASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVT 402
AG NA+ SS T G V+ ++ + AH I+AL + GTLL T
Sbjct: 217 PGKEHSAGSGLNATSSSGTVKNGDVIFFNLQTLQPTMVIEAHKGEIAALALSKDGTLLAT 276
Query: 403 ASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462
AS G I +F + + +Y+ RG I + FS ++
Sbjct: 277 ASEKGTIIRVFSV-------------------ETCTKVYQFRRGTYPTRIYSLNFSDDNE 317
Query: 463 WIAIVSSRGTCHIFVL 478
++A SS T HIF L
Sbjct: 318 FLAASSSNKTVHIFKL 333
|
Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) |
| >sp|Q6FM63|ATG18_CANGA Autophagy-related protein 18 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 124/308 (40%), Gaps = 49/308 (15%)
Query: 177 MSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLT 236
+SP +R + + H+ + + F + + V+ + + V L QIY +D + ++
Sbjct: 70 LSPRRLRIINTKKHSIICEVTFPTKILSVKMNRSRIVVVLKEQIYIYDINNMRLLHTIEI 129
Query: 237 YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296
P P +G ++ LAY SP + ++P+ + +
Sbjct: 130 APNP----EGLVALSCN-----TDTNLLAYP------------SPPKVISSDINPNVNTN 168
Query: 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNAS 356
N+ AR +S + +A N + T Q+ D ++ + ++ +N
Sbjct: 169 TINI-AR--SKSEELIANSKDNNLQNKFGTTLEGQQNIDEDKAA------NGYQVDQNTD 219
Query: 357 HSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416
+ + +G V++ D+ + + AH I+AL F G+L+ TAS G I +F
Sbjct: 220 TAENDINSGDVIIYDMSTLQPLMVIEAHKGEIAALNFSFDGSLIATASEKGTIIRVFS-- 277
Query: 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIF 476
TSS LY+ RG I + FS ++++++ S T HIF
Sbjct: 278 -----------------TSSGAKLYQFRRGTYPTKIYSLSFSQDNRFLSVTCSSKTVHIF 320
Query: 477 VLTPFGGE 484
LT G E
Sbjct: 321 KLTKTGEE 328
|
Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) |
| >sp|Q6C044|ATG18_YARLI Autophagy-related protein 18 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 342 PVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLV 401
P S++++ G N + S + G V + D S ++ AH +P++ L + GTLL
Sbjct: 152 PAPSSTAFNPGENNINDSSPNRKGDVTIFDCNSLQPVNVVEAHKTPLACLSLNSDGTLLA 211
Query: 402 TASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS 461
TAS G I +F + P + K LY+ RG A I I F+ S
Sbjct: 212 TASDKGTIIRVFSV-PKAQK------------------LYEFRRGTYPAQIFSINFNLAS 252
Query: 462 QWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501
+A+ S+ T HIF L T Q++ + PT +P
Sbjct: 253 NLMAVSSATETVHIFQLEAGVSSTPEVPQDTELAIPTRTP 292
|
Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q6CS21|ATG18_KLULA Autophagy-related protein 18 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 124/306 (40%), Gaps = 58/306 (18%)
Query: 174 NVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFS 233
N AMSP +R + + H+ + + F +T+ V+ + +AV L QIY +D + +
Sbjct: 66 NPAMSPRRLRMLNTKRHSVICEVTFPTTILSVKMNKSRLAVLLQEQIYIYDISNMRLLHT 125
Query: 234 VLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLL-PNTGRLSPQSLTPPSVSPS 292
+ T QG M++ P + NN L+ P SP + +
Sbjct: 126 IET----SMNAQGI---------MSMSPN----SENNYLVYP-----SPPKVINSEIKDH 163
Query: 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAG 352
+ +N N+ AV+ + + L D ++ Q P G S+N++ K
Sbjct: 164 ATTNNINIKKTDAVDDTIKKDYSLQVPSD-----ITGQQQQQQP-GVDPATSNNTANKII 217
Query: 353 RNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINI 412
+N G V+V ++ + AH I+AL GTLL TAS G I +
Sbjct: 218 KN----------GDVIVFNLQTLQPTMVIEAHKGEIAALKLSADGTLLATASEKGTIIRV 267
Query: 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472
F + +GS +Y+ RG I + FS +Q++A+ SS T
Sbjct: 268 FNV-------ENGS------------KVYQFRRGTYPTKISSLSFSKDNQFLAVCSSSKT 308
Query: 473 CHIFVL 478
HIF L
Sbjct: 309 VHIFKL 314
|
Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | ||||||
| 255542504 | 991 | breast carcinoma amplified sequence, put | 0.934 | 0.591 | 0.787 | 0.0 | |
| 147845501 | 754 | hypothetical protein VITISV_035392 [Viti | 0.948 | 0.789 | 0.788 | 0.0 | |
| 359487960 | 986 | PREDICTED: uncharacterized protein LOC10 | 0.948 | 0.603 | 0.784 | 0.0 | |
| 224131438 | 973 | predicted protein [Populus trichocarpa] | 0.968 | 0.623 | 0.765 | 0.0 | |
| 449436024 | 989 | PREDICTED: uncharacterized protein LOC10 | 0.940 | 0.596 | 0.769 | 0.0 | |
| 357441547 | 908 | hypothetical protein MTR_1g082300 [Medic | 0.948 | 0.655 | 0.719 | 0.0 | |
| 356576755 | 910 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.657 | 0.738 | 0.0 | |
| 356535123 | 910 | PREDICTED: uncharacterized protein LOC10 | 0.952 | 0.656 | 0.733 | 0.0 | |
| 298205017 | 807 | unnamed protein product [Vitis vinifera] | 0.886 | 0.688 | 0.765 | 0.0 | |
| 297853438 | 931 | hypothetical protein ARALYDRAFT_474746 [ | 0.945 | 0.636 | 0.702 | 0.0 |
| >gi|255542504|ref|XP_002512315.1| breast carcinoma amplified sequence, putative [Ricinus communis] gi|223548276|gb|EEF49767.1| breast carcinoma amplified sequence, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/594 (78%), Positives = 525/594 (88%), Gaps = 8/594 (1%)
Query: 24 LIPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQVLWSSFDKLELSPSSFKHV 83
IPNSLKFISSCIKTASSGVRSA ASVAASISGD+ KDQVLW+SFD+LEL PSSFK V
Sbjct: 19 FIPNSLKFISSCIKTASSGVRSASASVAASISGDNQAHKDQVLWASFDRLELGPSSFKQV 78
Query: 84 LLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVA 143
LLLGYSNGFQV+DVEDA++V ELVS+RDDPVTFLQMQP PAKS+ EGFR SHPLLLVVA
Sbjct: 79 LLLGYSNGFQVIDVEDASDVLELVSKRDDPVTFLQMQPRPAKSEDCEGFRASHPLLLVVA 138
Query: 144 CDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVY 203
CDEAK+S + GRDG VRDGY+EPQ G+V++SPT VRFYSLRSHNYVHVLRFRS VY
Sbjct: 139 CDEAKSSA--PMLSGRDGSVRDGYNEPQTGHVSISPTTVRFYSLRSHNYVHVLRFRSIVY 196
Query: 204 MVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRW 263
MVRCSP IVAVGLA+QIYCFDALTLE+KFSVLTYPVP GGQ GVNIGYGPMAVGPRW
Sbjct: 197 MVRCSPHIVAVGLASQIYCFDALTLENKFSVLTYPVPQLGGQAMGGVNIGYGPMAVGPRW 256
Query: 264 LAYASNNPLLPNTGRLSPQSLTPP-SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDM 322
LAYAS+NPL+ NTGRLSPQSLTPP VSPSTSP +G+LMARYA+ESSKQ+A GLINLGDM
Sbjct: 257 LAYASDNPLVSNTGRLSPQSLTPPMGVSPSTSPGSGSLMARYAMESSKQIATGLINLGDM 316
Query: 323 GYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR 382
GYKTLSRYYQD IPDGSSSPV SNSSWK GR+A+HS +T+ AGMVVVKD VSR+V+SQFR
Sbjct: 317 GYKTLSRYYQDLIPDGSSSPVYSNSSWKLGRSATHSLETENAGMVVVKDFVSRAVVSQFR 376
Query: 383 AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442
AHTSPISALCFD SGTLLVTASIHGNNINIFRIMPSSS+ SGS +++YDW+SSHVHLYK
Sbjct: 377 AHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSSSQ--SGSGTKSYDWSSSHVHLYK 434
Query: 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPV 502
LHRG+TSAVIQDICFSHYSQWIAIVSSRGTCHIFVL+PFGGE VLQI NSHVD P+L PV
Sbjct: 435 LHRGITSAVIQDICFSHYSQWIAIVSSRGTCHIFVLSPFGGENVLQIHNSHVDGPSLLPV 494
Query: 503 LSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTASSTAGKTSIPS 562
LS+PWWS+ +NQ FS PP PVTLSVVSRIKNNN+GWLNTVS+ ASS GKTS+ S
Sbjct: 495 LSLPWWSTSLLTVNQQCFSASPPSPVTLSVVSRIKNNNTGWLNTVSNAASS--GKTSLQS 552
Query: 563 GALAAVFHSSLHQDLQPLDSK-VNDLEHVLVYTPSGHVVQYKLLSSIGGESSEL 615
GA+A+VFH+ + Q+L P K VN L+H+LVYTPSGH+VQYKL+S++G +++E+
Sbjct: 553 GAIASVFHNCVPQNLHPAHLKNVNALDHLLVYTPSGHLVQYKLMSTVGADATEV 606
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147845501|emb|CAN80611.1| hypothetical protein VITISV_035392 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/609 (78%), Positives = 525/609 (86%), Gaps = 14/609 (2%)
Query: 12 NNNNIKHANGLNLIPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQVLWSSFD 71
N N+ NG IPNSL+FISSCIKTAS+GVRSAGASVAASISGD E KDQVL + FD
Sbjct: 3 NTNHKPKNNGF--IPNSLRFISSCIKTASTGVRSAGASVAASISGDPDERKDQVLCACFD 60
Query: 72 KLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEG 131
+LEL PS+FKHVLLLGYSNGFQVLDVED++NVSELVSRRDDPVTFLQMQP+PAKS+G+EG
Sbjct: 61 RLELGPSNFKHVLLLGYSNGFQVLDVEDSSNVSELVSRRDDPVTFLQMQPIPAKSEGREG 120
Query: 132 FRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN 191
FR SHPLLLVVA DE K GL + RDG VRDGY EPQ GNV SPTAVRFYSLRSHN
Sbjct: 121 FRASHPLLLVVAGDETK--GLGPIQSVRDGPVRDGYIEPQAGNVVNSPTAVRFYSLRSHN 178
Query: 192 YVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVN 251
YVHVLRFRSTVYMVRCSPRIVAVGLA QIYCFDALTLE+KFSVLTYPVP GGQG +GVN
Sbjct: 179 YVHVLRFRSTVYMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGLAGVN 238
Query: 252 IGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLT-PPSVSPSTSPSNGNLMARYAVESSK 310
IGYGPM VG RWLAYASNNPLL N GRLSPQSLT P VSPSTSPS+G+L+ARYA+ESSK
Sbjct: 239 IGYGPMDVGLRWLAYASNNPLLSNMGRLSPQSLTPSPGVSPSTSPSSGSLVARYAMESSK 298
Query: 311 QLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370
QLAAG+INLGDMGYKTLS+Y Q+ PDGSSSPVSS+SSWK GR ASHS++TD AGMVVVK
Sbjct: 299 QLAAGIINLGDMGYKTLSKYCQELRPDGSSSPVSSHSSWKVGRVASHSNETDSAGMVVVK 358
Query: 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430
D VSR+V+SQFRAHTSPISALCFD SGT+LVTASIHGNNINIFRIMPS S+ SG
Sbjct: 359 DFVSRAVVSQFRAHTSPISALCFDPSGTVLVTASIHGNNINIFRIMPSCSQNASG----- 413
Query: 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490
YDW +SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS+GTCHIFVL+PFGGE+ LQIQ
Sbjct: 414 YDWNASHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSKGTCHIFVLSPFGGESGLQIQ 473
Query: 491 NSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSST 550
NSHV R +L PVLS+PWWS+ SFMINQ SFS PPP +TLSVVSRIK NSGWLN+VS+
Sbjct: 474 NSHV-RSSLLPVLSLPWWSTSSFMINQQSFSPPPPQTITLSVVSRIK--NSGWLNSVSNV 530
Query: 551 ASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQYKLLSSI-G 609
ASS AGK S+PSGA+AAVFHSS+ DL P KVN LEH+LVYTPSGHV+QY+LL S+ G
Sbjct: 531 ASSAAGKVSVPSGAVAAVFHSSVPHDLLPAHLKVNALEHLLVYTPSGHVIQYELLPSMGG 590
Query: 610 GESSELGKG 618
GE SE G
Sbjct: 591 GEPSETASG 599
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487960|ref|XP_003633682.1| PREDICTED: uncharacterized protein LOC100250287 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/609 (78%), Positives = 523/609 (85%), Gaps = 14/609 (2%)
Query: 12 NNNNIKHANGLNLIPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQVLWSSFD 71
N N+ NG IPNSL+FISSCIKTAS+GVRSAGASVAASISGD E KDQVL + FD
Sbjct: 3 NTNHKPKNNGF--IPNSLRFISSCIKTASTGVRSAGASVAASISGDPDERKDQVLCACFD 60
Query: 72 KLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEG 131
+LEL PS+FKHVLLLGYSNGFQVLDVED++NVSELVSRRDDPVTFLQMQP+PAKS+G+EG
Sbjct: 61 RLELGPSNFKHVLLLGYSNGFQVLDVEDSSNVSELVSRRDDPVTFLQMQPIPAKSEGREG 120
Query: 132 FRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN 191
FR SHPLLLVVA DE K GL + RDG VRDGY EPQ GNV SPTAVRFYSLRSHN
Sbjct: 121 FRASHPLLLVVAGDETK--GLGPIQSVRDGPVRDGYIEPQAGNVVNSPTAVRFYSLRSHN 178
Query: 192 YVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVN 251
YVHVLRFRSTVYMVRCSPRIVAVGLA QIYCFDALTLE+KFSVLTYPVP GGQG +GVN
Sbjct: 179 YVHVLRFRSTVYMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGLAGVN 238
Query: 252 IGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLT-PPSVSPSTSPSNGNLMARYAVESSK 310
IGYGPM VG RWLAYASNNPLL N GRLSPQSLT P VSPSTSPS+G+L+ARYA+ESSK
Sbjct: 239 IGYGPMDVGLRWLAYASNNPLLSNMGRLSPQSLTPSPGVSPSTSPSSGSLVARYAMESSK 298
Query: 311 QLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370
QLAAG+INLGDMGYKTLS+Y Q+ PDGSSSPVSS+SSWK GR ASHS++TD AGMVVVK
Sbjct: 299 QLAAGIINLGDMGYKTLSKYCQELRPDGSSSPVSSHSSWKVGRVASHSNETDSAGMVVVK 358
Query: 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430
D VSR+V+SQFRAHTSPISALCFD SGTLLVTASIHGNNINIFRIMPS S+ SG
Sbjct: 359 DFVSRAVVSQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSCSQNASG----- 413
Query: 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490
YDW +SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS+GTCHIFVL+PFGGE+ LQIQ
Sbjct: 414 YDWNASHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSKGTCHIFVLSPFGGESGLQIQ 473
Query: 491 NSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSST 550
NSHV R +L PVLS+PWWS+ SFMINQ SFS PPP +TLSVVSRIK NSGWLN+VS+
Sbjct: 474 NSHV-RSSLLPVLSLPWWSTSSFMINQQSFSPPPPQTITLSVVSRIK--NSGWLNSVSNV 530
Query: 551 ASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQYKLLSSIGG 610
ASS AGK S+PSGA+AAVFHSS+ DL P KVN LEH+LVYTPSGHV+QY+L + GG
Sbjct: 531 ASSAAGKVSVPSGAVAAVFHSSVPHDLLPAHLKVNALEHLLVYTPSGHVIQYELFAIHGG 590
Query: 611 -ESSELGKG 618
+SE G
Sbjct: 591 RRASETASG 599
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131438|ref|XP_002328539.1| predicted protein [Populus trichocarpa] gi|222838254|gb|EEE76619.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/619 (76%), Positives = 533/619 (86%), Gaps = 12/619 (1%)
Query: 1 MKSNHNNNKQSNNNNIKHANGLNLIPNSLKFISSCIKTASSGVRSAGASVAASISGDSHE 60
MK+N N + +++++ ++ IPNSLKFISSCIKTASSGVRSA ASVAAS+SGD H+
Sbjct: 1 MKNNSNKGESNSSSSHNNSKNNRFIPNSLKFISSCIKTASSGVRSASASVAASVSGDHHD 60
Query: 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQ 120
KDQVLW+SFDKLEL P S ++VLLLGYS+GFQV+DVEDA+N++ELVSRRDDPVTFLQMQ
Sbjct: 61 HKDQVLWASFDKLELGPGSLRNVLLLGYSSGFQVIDVEDASNITELVSRRDDPVTFLQMQ 120
Query: 121 PLPAKSDG--QEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMS 178
PLPAKS+G EG+R SHPLLLVVACDE+K+SG + RDG++EP GNVA+S
Sbjct: 121 PLPAKSEGCKGEGYRASHPLLLVVACDESKSSGPILSG-------RDGFNEPHMGNVAIS 173
Query: 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYP 238
PT VRFYSLRSHNYVHVLRFRSTVYMVR S RIVAVGLA QIYCFDALT E+KFSVLTYP
Sbjct: 174 PTIVRFYSLRSHNYVHVLRFRSTVYMVRSSQRIVAVGLATQIYCFDALTFENKFSVLTYP 233
Query: 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNG 298
VP GGQG GVNIGYGPMAVGPRWLAYAS+NPL+ NTGRLSPQSLTP VSPS+SP +G
Sbjct: 234 VPQLGGQGMVGVNIGYGPMAVGPRWLAYASDNPLVLNTGRLSPQSLTPLGVSPSSSPGSG 293
Query: 299 NLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHS 358
+L+ARYA+ESSKQLA GLINLGDMGYKTLSRY D +PDGSSSPVSSNSSWK GR A++S
Sbjct: 294 SLVARYAMESSKQLATGLINLGDMGYKTLSRYCHDLMPDGSSSPVSSNSSWKVGRGATNS 353
Query: 359 SDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPS 418
+DTD AGMVVVKD VSR+VISQFRAHTSPISALCFD SGTLLVTASIHGNNINIFRIMPS
Sbjct: 354 ADTDTAGMVVVKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPS 413
Query: 419 SSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478
S+ SG ++ YDW+SSHVHLYKLHRG+T A+IQDICFSHYSQWIAIVSSRGTCHIFVL
Sbjct: 414 CSQ--SGQGAKNYDWSSSHVHLYKLHRGITPAIIQDICFSHYSQWIAIVSSRGTCHIFVL 471
Query: 479 TPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKN 538
+PFGGE VLQI NSHVD P LSPV+S+PWWS+PSF++NQ SFS PP PVTLSVVSRIKN
Sbjct: 472 SPFGGENVLQIHNSHVDGPALSPVVSLPWWSTPSFLVNQHSFSSSPPSPVTLSVVSRIKN 531
Query: 539 NNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLD-SKVNDLEHVLVYTPSG 597
NNSGWLNTVS+ SS AGK SIPSGA+AAVFHS +HQD Q KVN LEH++VYTP G
Sbjct: 532 NNSGWLNTVSNATSSAAGKASIPSGAIAAVFHSCVHQDSQSAHLRKVNSLEHLMVYTPCG 591
Query: 598 HVVQYKLLSSIGGESSELG 616
HVVQYKLLSS+GGE SE+
Sbjct: 592 HVVQYKLLSSVGGEPSEIA 610
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436024|ref|XP_004135794.1| PREDICTED: uncharacterized protein LOC101212289 [Cucumis sativus] gi|449485885|ref|XP_004157300.1| PREDICTED: uncharacterized protein LOC101231149 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/598 (76%), Positives = 517/598 (86%), Gaps = 8/598 (1%)
Query: 17 KHANGLNLIPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQVLWSSFDKLELS 76
K ANG +PNSLKFISSCIKTASSGVRSA ASVAASISGD+H+ KDQVLW+ FDKLEL
Sbjct: 22 KPANGF--LPNSLKFISSCIKTASSGVRSASASVAASISGDAHDHKDQVLWAGFDKLELC 79
Query: 77 PSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136
PS KHVLL+GY+NGFQVLDVEDA NVSELVSRRDDPVTF+QMQPLPAKSDGQEGF SH
Sbjct: 80 PSFSKHVLLVGYTNGFQVLDVEDAPNVSELVSRRDDPVTFMQMQPLPAKSDGQEGFGASH 139
Query: 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL 196
P+LLVVACDE+++SGL+ GR+GLVRDGY + ++P AVRFYSL+S +YVHVL
Sbjct: 140 PILLVVACDESQSSGLMQS--GRNGLVRDGYPNGHSDRITLAPMAVRFYSLKSRSYVHVL 197
Query: 197 RFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256
RFRSTVYM+RCSP IVAVGLA+QIYCFDALTLESKFSVLTYPVP GGQGTSGVNIGYGP
Sbjct: 198 RFRSTVYMIRCSPEIVAVGLASQIYCFDALTLESKFSVLTYPVPQLGGQGTSGVNIGYGP 257
Query: 257 MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGL 316
MAVGPRWLAYASNNPL NTGRLSPQSLTPP VSPSTSP +GNL+ARYA+ESSK LAAGL
Sbjct: 258 MAVGPRWLAYASNNPLQSNTGRLSPQSLTPPGVSPSTSPGSGNLVARYAMESSKHLAAGL 317
Query: 317 INLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376
INLGDMGYKTLS+YYQ+F+PDGS+SP+SSNSS K GR HS++TD AGMVVVKD VS++
Sbjct: 318 INLGDMGYKTLSKYYQEFVPDGSNSPLSSNSSRKVGR--LHSTETDAAGMVVVKDFVSKA 375
Query: 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436
VISQF+AH+SPISALCFD SGTLLVTAS HG+NINIFRIMPS + +GS +Q+YDW+SS
Sbjct: 376 VISQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMPSHIQ--NGSGTQSYDWSSS 433
Query: 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDR 496
HVHLYKLHRG+TSAVIQDICFSHYSQWIAIVSSRGTCHIF L+PFGGETVLQ+ NS VD
Sbjct: 434 HVHLYKLHRGLTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGGETVLQMHNSFVDG 493
Query: 497 PTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTASSTAG 556
P L P VPWWS+ +F+ NQ SFS PPP PVTLSVVSRIKN NSGWL+TVS A+S +G
Sbjct: 494 PNLIPASCVPWWSTSTFITNQQSFSPPPPPPVTLSVVSRIKNCNSGWLSTVSMAAASASG 553
Query: 557 KTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQYKLLSSIGGESSE 614
K SIPSGA++AVFHS + Q+ Q N LEH+LVYTPSGHV+Q+KLL S+GGE E
Sbjct: 554 KVSIPSGAISAVFHSCIPQNPQSPQLSSNTLEHLLVYTPSGHVIQHKLLPSMGGECGE 611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441547|ref|XP_003591051.1| hypothetical protein MTR_1g082300 [Medicago truncatula] gi|355480099|gb|AES61302.1| hypothetical protein MTR_1g082300 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/607 (71%), Positives = 500/607 (82%), Gaps = 12/607 (1%)
Query: 9 KQSNNNNIKHANGLNLIPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQVLWS 68
KQ NNN +NG +P+S KFISSCIKTASSGVR+AGASVAASISGD + KDQVLW+
Sbjct: 3 KQGKNNNGSKSNGF--VPSSFKFISSCIKTASSGVRTAGASVAASISGDGTDRKDQVLWA 60
Query: 69 SFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDG 128
FD+LEL SSFK VLLLGYSNGFQVLDVEDA+++ ELVS+RDDPV+FLQMQP+P KS+G
Sbjct: 61 CFDRLELDLSSFKRVLLLGYSNGFQVLDVEDASDIRELVSKRDDPVSFLQMQPVPTKSEG 120
Query: 129 QEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLR 188
EGF SHPLLLVVACD++K G V VRDG++E N+ S T VRFYSLR
Sbjct: 121 CEGFGASHPLLLVVACDKSKIPGTVQN-------VRDGHNEAHAENIINSATTVRFYSLR 173
Query: 189 SHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTS 248
SH YVH LRFRSTVYMVRCSP+IVAVGLA QIYCFDALTLE+KFSVLTYPVP GGQG
Sbjct: 174 SHTYVHALRFRSTVYMVRCSPQIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGMV 233
Query: 249 GVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVES 308
GVNIGYGPMAVGPRWLAYASNNPLL NT RLSPQSLTPP+VSPSTSPS+GNL+ARYA+ES
Sbjct: 234 GVNIGYGPMAVGPRWLAYASNNPLLLNTSRLSPQSLTPPAVSPSTSPSSGNLVARYAMES 293
Query: 309 SKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVV 368
SK LA+GLINL DMGYKTLS+YYQD +PDGSSSPVS NS WK R AS+S++TD AG+V+
Sbjct: 294 SKHLASGLINLSDMGYKTLSKYYQDLMPDGSSSPVSPNSGWKVSRFASNSTETDAAGVVI 353
Query: 369 VKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSAS 428
VKD VSR+V++QFRAHTSPISALCFD+SGTLLVTASIHGNNINIFRIMPS SK GS S
Sbjct: 354 VKDFVSRAVVAQFRAHTSPISALCFDQSGTLLVTASIHGNNINIFRIMPSYSK--KGSGS 411
Query: 429 QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQ 488
Q+ DW+ SHVHLYKLHRGMTSAVIQDICFSHYSQW+A++SS+GTCHIFVL+PFGGETVL+
Sbjct: 412 QSNDWSCSHVHLYKLHRGMTSAVIQDICFSHYSQWVAVISSKGTCHIFVLSPFGGETVLK 471
Query: 489 IQNSHVDRPTLSPVLSVPWWSSPSFMINQ-PSFSLPPPLPVTLSVVSRIKNNNSGWLNTV 547
I N + P L PV +PWW +P F +NQ PP P LSVVSRIKN N+GWLNTV
Sbjct: 472 IHNQDTEGPVLLPVFPLPWWFTPHFTVNQHQQLCHPPQPPAFLSVVSRIKNVNAGWLNTV 531
Query: 548 SSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQYKLLSS 607
S+ SS AGK S+PSGA++AVFHSS+ D +KV+ +EH+LVYTPSGH++QY LL S
Sbjct: 532 SNVTSSAAGKVSVPSGAVSAVFHSSVPPDSHNAHAKVHAMEHLLVYTPSGHLIQYNLLPS 591
Query: 608 IGGESSE 614
+ E +E
Sbjct: 592 LMAEPNE 598
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576755|ref|XP_003556495.1| PREDICTED: uncharacterized protein LOC100776558 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/609 (73%), Positives = 508/609 (83%), Gaps = 11/609 (1%)
Query: 6 NNNKQSNNNNIKHANGLNLIPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQV 65
N +K + K +NG +P+S KFISSCIKTASSGVRSAGASVAASISGD H+ +DQ+
Sbjct: 3 NLSKDKGCSRSKSSNGF--VPSSFKFISSCIKTASSGVRSAGASVAASISGDGHDRRDQM 60
Query: 66 LWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAK 125
LW+ FD+LELSPSSFKHVLLL YSNGFQVLDVEDA+NV ELVS+RDDPV+FLQMQP+PA
Sbjct: 61 LWACFDRLELSPSSFKHVLLLSYSNGFQVLDVEDASNVRELVSKRDDPVSFLQMQPIPAI 120
Query: 126 SDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFY 185
S+G EGFR SHPLLLVVACD++K G + VRDG++E Q N+ S TAVRFY
Sbjct: 121 SEGCEGFRASHPLLLVVACDKSKIPGKMLN-------VRDGHNEAQAENIVSSATAVRFY 173
Query: 186 SLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQ 245
SLRSH YVH LRFRSTVYMVRCSPRIVAVGLA QIYCFDALTLE+KFSVLTYPVP GGQ
Sbjct: 174 SLRSHTYVHALRFRSTVYMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQ 233
Query: 246 GTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYA 305
G GVNIGYGPMAVGPRWLAYASN+PLL NTGRLSPQSLTPP+VSPSTSPS+GNL+ARYA
Sbjct: 234 GMIGVNIGYGPMAVGPRWLAYASNSPLLSNTGRLSPQSLTPPAVSPSTSPSSGNLVARYA 293
Query: 306 VESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAG 365
+ESSK LAAGLINL DMGYKTLS+YYQD PDGSSSPVSSNSSWK R A +S++TD AG
Sbjct: 294 MESSKHLAAGLINLSDMGYKTLSKYYQDLTPDGSSSPVSSNSSWKVTRFALNSTETDPAG 353
Query: 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG 425
MVVVKD VSR+V++QFRAHTSPISALCFD SGTLLVTASIHGNNINIFRIMPS S R+G
Sbjct: 354 MVVVKDFVSRAVVAQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSCS--RNG 411
Query: 426 SASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485
S SQ+ DW SHVHLYKLHRGMTSAVIQDICFSHYSQW+AI+SS+GTCHIFVL PFGGET
Sbjct: 412 SGSQSSDWNYSHVHLYKLHRGMTSAVIQDICFSHYSQWVAIISSKGTCHIFVLAPFGGET 471
Query: 486 VLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNNSGWLN 545
VL++ + D P L P+ +PWW +P F +NQ L PP PV LSVVSRIKN+N+GWLN
Sbjct: 472 VLKMHDQDTDGPALLPIFPLPWWFTPHFPVNQQQLCLTPPPPVVLSVVSRIKNSNAGWLN 531
Query: 546 TVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQYKLL 605
TVS+ ASS AGK SIPSGA++AVFHSS+ D K + +EH+LVYTPSGH++QYKLL
Sbjct: 532 TVSNAASSAAGKVSIPSGAVSAVFHSSIPHDSHNSYLKNHAMEHLLVYTPSGHLIQYKLL 591
Query: 606 SSIGGESSE 614
+ ESSE
Sbjct: 592 PPLAAESSE 600
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535123|ref|XP_003536098.1| PREDICTED: uncharacterized protein LOC100814635 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/608 (73%), Positives = 508/608 (83%), Gaps = 11/608 (1%)
Query: 7 NNKQSNNNNIKHANGLNLIPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQVL 66
N + N + K +NG +P+S KFISSCIKTASSGV SAGASVAASISGD ++ KDQVL
Sbjct: 3 NQSKDNGCSSKSSNGF--VPSSFKFISSCIKTASSGVLSAGASVAASISGDGNDRKDQVL 60
Query: 67 WSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKS 126
W+ FD+LEL PSSFK+VLLLGYSNGFQVLDVEDA+NV ELVS+RDDPV+FLQMQP+P S
Sbjct: 61 WACFDRLELGPSSFKNVLLLGYSNGFQVLDVEDASNVRELVSKRDDPVSFLQMQPVPEIS 120
Query: 127 DGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYS 186
+G EGFR SHPLLLVVACD++K G + VRDG++E Q N+ S TAVRFYS
Sbjct: 121 EGCEGFRASHPLLLVVACDKSKIPGKMLN-------VRDGHNETQAENIVSSATAVRFYS 173
Query: 187 LRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQG 246
LRSH YVH LRFRSTVYMVRCSPRIVAVGLA QIYCFDALTLE+KFSVLTYPVP GGQG
Sbjct: 174 LRSHTYVHALRFRSTVYMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQG 233
Query: 247 TSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAV 306
GVNIGYGPMAVGPRWLAYASN+ LL NTGRLSPQSLTPP+VSPSTSPS+GN +ARYA+
Sbjct: 234 MIGVNIGYGPMAVGPRWLAYASNSSLLSNTGRLSPQSLTPPAVSPSTSPSSGNPVARYAM 293
Query: 307 ESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366
ESSK LAAGLINL DMGYKTLS+YYQD IPDGS SPVSSNSSWK R AS+S++TD AGM
Sbjct: 294 ESSKNLAAGLINLSDMGYKTLSKYYQDLIPDGSCSPVSSNSSWKVSRFASNSTETDPAGM 353
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGS 426
VVVKD VSR+V++QFRAHTSPISALCFD SGTLLVTASIHGNNINIFRIMPS S R+GS
Sbjct: 354 VVVKDFVSRAVVAQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSCS--RNGS 411
Query: 427 ASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV 486
SQ+ DW+ SHVHLYKLHRGMTSAVIQDICFSHYSQW+AI+SS+GTCHIFVL PFGGETV
Sbjct: 412 GSQSSDWSYSHVHLYKLHRGMTSAVIQDICFSHYSQWVAIISSKGTCHIFVLAPFGGETV 471
Query: 487 LQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNNSGWLNT 546
L++ + D P L P+ +PWW +P F +NQ + L PP PV LSVVSRIKN+N+GWLNT
Sbjct: 472 LKMHDQDTDGPALLPIFPLPWWFTPHFTVNQQQYCLTPPPPVVLSVVSRIKNSNAGWLNT 531
Query: 547 VSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQYKLLS 606
VS+ ASS AGK SIPSGA++AVFHSS+ + SK++ +EH+LVYTPSGH++QYKLL
Sbjct: 532 VSNAASSAAGKVSIPSGAVSAVFHSSIPYNSHNAYSKIHAMEHLLVYTPSGHLIQYKLLP 591
Query: 607 SIGGESSE 614
+ E SE
Sbjct: 592 PLVAEPSE 599
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205017|emb|CBI34324.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/588 (76%), Positives = 491/588 (83%), Gaps = 32/588 (5%)
Query: 12 NNNNIKHANGLNLIPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQVLWSSFD 71
N N+ NG IPNSL+FISSCIKTAS+GVRSAGASVAASISGD E KDQVL + FD
Sbjct: 3 NTNHKPKNNGF--IPNSLRFISSCIKTASTGVRSAGASVAASISGDPDERKDQVLCACFD 60
Query: 72 KLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEG 131
+LEL PS+FKHVLLLGYSNGFQVLDVED++NVSELVSRRDDPVTFLQMQP+PAKS+G+EG
Sbjct: 61 RLELGPSNFKHVLLLGYSNGFQVLDVEDSSNVSELVSRRDDPVTFLQMQPIPAKSEGREG 120
Query: 132 FRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN 191
FR SHPLLLVVA DGY EPQ GNV SPTAVRFYSLRSHN
Sbjct: 121 FRASHPLLLVVA---------------------DGYIEPQAGNVVNSPTAVRFYSLRSHN 159
Query: 192 YVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVN 251
YVHVLRFRSTVYMVRCSPRIVAVGLA QIYCFDALTLE+KFSVLTYPVP GGQG +GVN
Sbjct: 160 YVHVLRFRSTVYMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGLAGVN 219
Query: 252 IGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGN-LMARYAVESSK 310
IGYGPM VG RWLAYASNNPLL N GRLSPQSLTP ++ + L+ARYA+ESSK
Sbjct: 220 IGYGPMDVGLRWLAYASNNPLLSNMGRLSPQSLTPSPGVSPSTSPSSGSLVARYAMESSK 279
Query: 311 QLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370
QLAAG+INLGDMGYKTLS+Y Q+ PDGSSSPVSS+SSWK GR ASHS++TD AGMVVVK
Sbjct: 280 QLAAGIINLGDMGYKTLSKYCQELRPDGSSSPVSSHSSWKVGRVASHSNETDSAGMVVVK 339
Query: 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430
D VSR+V+SQFRAHTSPISALCFD SGTLLVTASIHGNNINIFRIMPS S+ SG
Sbjct: 340 DFVSRAVVSQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSCSQNASG----- 394
Query: 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490
YDW +SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS+GTCHIFVL+PFGGE+ LQIQ
Sbjct: 395 YDWNASHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSKGTCHIFVLSPFGGESGLQIQ 454
Query: 491 NSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSST 550
NSHV R +L PVLS+PWWS+ SFMINQ SFS PPP +TLSVVSRIK NSGWLN+VS+
Sbjct: 455 NSHV-RSSLLPVLSLPWWSTSSFMINQQSFSPPPPQTITLSVVSRIK--NSGWLNSVSNV 511
Query: 551 ASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGH 598
ASS AGK S+PSGA+AAVFHSS+ DL P KVN LEH+LVYTPSGH
Sbjct: 512 ASSAAGKVSVPSGAVAAVFHSSVPHDLLPAHLKVNALEHLLVYTPSGH 559
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297853438|ref|XP_002894600.1| hypothetical protein ARALYDRAFT_474746 [Arabidopsis lyrata subsp. lyrata] gi|297340442|gb|EFH70859.1| hypothetical protein ARALYDRAFT_474746 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/615 (70%), Positives = 502/615 (81%), Gaps = 22/615 (3%)
Query: 1 MKSNHNNNKQSNNNNIKHANGLN-LIPNSLKFISSCIKTASSGVRSAGASVAASISGDSH 59
MKSN N N+N K NG N +PNSLKFIS+CI+TASSGVRSA ASVAAS+S DSH
Sbjct: 1 MKSNSKINNGDNHNQTK-TNGTNGFLPNSLKFISTCIRTASSGVRSASASVAASLSSDSH 59
Query: 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQM 119
ELKDQVLWSSFD+L S SSFK+VLLLGY+NGFQVLD++DA++V+E VSRRDDPVTFLQM
Sbjct: 60 ELKDQVLWSSFDRLHTSESSFKNVLLLGYTNGFQVLDIDDASDVTEFVSRRDDPVTFLQM 119
Query: 120 QPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSP 179
QPLPAK DG EGFR+SHP+LL VA DEAK SG + GRDG VR+GY++P +A+SP
Sbjct: 120 QPLPAKCDGVEGFRSSHPILLAVA-DEAKGSG--PIVTGRDGSVRNGYEDP----LALSP 172
Query: 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPV 239
T VRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGL +QIYCFDALTLE+KFSVL+YPV
Sbjct: 173 TVVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLSYPV 232
Query: 240 PHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGN 299
P G QG SGVN+GYGPMAVGPRWLAYASN+PL + GRLSPQ++TPP VSPSTSPSNGN
Sbjct: 233 PQLGNQGISGVNVGYGPMAVGPRWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPSNGN 292
Query: 300 LMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSS 359
L+ARYA+ESSK LAAGL+N+GD +KT+S+Y QD DG +SS+ K GR ASHS+
Sbjct: 293 LVARYAMESSKHLAAGLLNMGDKSFKTISKYCQDLKHDGPGPSLSSSPGRKVGRLASHSA 352
Query: 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSS 419
++D+ G V+VKD SR++I+QFRAHTSPISALCFD SGTLLVTASIHGNNIN+FRIMPS
Sbjct: 353 ESDVVGTVIVKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIMPSH 412
Query: 420 SKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479
+K +G +Q+YDW+SSHV LYKLHRGMTSAVIQ ICFS YSQWIAIVSS+GTCHI+VL+
Sbjct: 413 TK--NGPGAQSYDWSSSHVPLYKLHRGMTSAVIQGICFSSYSQWIAIVSSKGTCHIYVLS 470
Query: 480 PFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNN 539
PFGGE VL+I+NS D PTL+P LS+PWWSSPSFM FS PPP VTLSVVSRIK N
Sbjct: 471 PFGGENVLEIRNSQFDGPTLAPTLSLPWWSSPSFMTTH--FSYPPPASVTLSVVSRIKCN 528
Query: 540 NSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHV 599
N ASS GK + PSG LAAVFH S+ Q+ Q S + L+++LVYTPSGHV
Sbjct: 529 N------FFHAASSVVGKPTFPSGCLAAVFHQSVPQESQ---SSSHALDYLLVYTPSGHV 579
Query: 600 VQYKLLSSIGGESSE 614
VQYKL+ S+GG+ +E
Sbjct: 580 VQYKLIPSLGGDQAE 594
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | ||||||
| TAIR|locus:2199512 | 927 | ATG18H "AT1G54710" [Arabidopsi | 0.896 | 0.606 | 0.602 | 2.5e-175 | |
| TAIR|locus:2020853 | 959 | ATG18G "AT1G03380" [Arabidopsi | 0.909 | 0.594 | 0.534 | 4.4e-155 | |
| TAIR|locus:2157523 | 763 | G18F "AT5G54730" [Arabidopsis | 0.427 | 0.351 | 0.378 | 1.4e-47 | |
| UNIPROTKB|F1S209 | 820 | BCAS3 "Uncharacterized protein | 0.191 | 0.146 | 0.359 | 3.6e-31 | |
| UNIPROTKB|F1P1V9 | 803 | BCAS3 "Uncharacterized protein | 0.192 | 0.150 | 0.362 | 5.4e-31 | |
| UNIPROTKB|Q9H6U6 | 928 | BCAS3 "Breast carcinoma-amplif | 0.191 | 0.129 | 0.359 | 6.1e-31 | |
| RGD|1560788 | 803 | Bcas3 "breast carcinoma amplif | 0.191 | 0.149 | 0.359 | 8e-31 | |
| UNIPROTKB|F1LSC9 | 824 | Bcas3 "Protein Bcas3" [Rattus | 0.191 | 0.145 | 0.359 | 9.1e-31 | |
| MGI|MGI:2385848 | 928 | Bcas3 "breast carcinoma amplif | 0.191 | 0.129 | 0.359 | 1.6e-30 | |
| UNIPROTKB|F1N6R8 | 724 | BCAS3 "Uncharacterized protein | 0.191 | 0.165 | 0.359 | 1e-27 |
| TAIR|locus:2199512 ATG18H "AT1G54710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1703 (604.5 bits), Expect = 2.5e-175, P = 2.5e-175
Identities = 351/583 (60%), Positives = 402/583 (68%)
Query: 21 GLN-LIPNSLKFISSCIKTXXXXXXXXXXXXXXXXXXXXHELKDQVLWSSFDKLELSPSS 79
G N +PNSLKFIS+CI+T HELKDQVLWSSFD+L S SS
Sbjct: 23 GTNGFLPNSLKFISTCIRTASSGVRSASASVAASLSSDSHELKDQVLWSSFDRLHTSESS 82
Query: 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139
FK+VLLLGY+NGFQVLD++D+ +V+E VSRRDDPVTFLQMQPLPAK DG EGFR+SHP+L
Sbjct: 83 FKNVLLLGYTNGFQVLDIDDSNDVTEFVSRRDDPVTFLQMQPLPAKCDGVEGFRSSHPIL 142
Query: 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR 199
L VA DEAK SG + RDG VR+GY++P +A+SPT VRFYSLRSHNYVHVLRFR
Sbjct: 143 LAVA-DEAKGSG--PIVTSRDGSVRNGYEDP----LALSPTVVRFYSLRSHNYVHVLRFR 195
Query: 200 STVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAV 259
STVYMVRCSPRIVAVGL +QIYCFDALTLE+KFSVL+YPVP G QG SGVN+GYGPMAV
Sbjct: 196 STVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLSYPVPQLGNQGISGVNVGYGPMAV 255
Query: 260 GPRWLAYASNNPLLPNTGRXXXXXXXXXXXXXXXXXXNGNLMARYAVESSKQLAAGLINL 319
G RWLAYASN+PL + GR NGNL+ARYA+ESSK LAAGL+NL
Sbjct: 256 GARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPNNGNLVARYAMESSKHLAAGLLNL 315
Query: 320 GDMGYKTLSRYYQDFIPDGXXXXXXXXXXWKAGRNASHSSDTDIAGMVVVKDIVSRSVIS 379
GD GYKT+S+Y QD DG K GR SHS+++D+ G V+VKD SR++I+
Sbjct: 316 GDKGYKTISKYCQDLKHDGPGPSLSSSPGRKVGRVGSHSAESDVVGTVIVKDFESRAIIA 375
Query: 380 QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPXXXXXXXXXXXQTYDWTSSHVH 439
QFRAHTSPISALCFD SGTLLVTASIHGNNIN+FRIMP Q+YDW+SSHV
Sbjct: 376 QFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIMPTPTKNGPGA--QSYDWSSSHVP 433
Query: 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTX 499
LYKLHRGMTSAVIQDICFS YSQWIAIVSS+ TCHI+VL+PFGGE VL+I+NS D PT
Sbjct: 434 LYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLSPFGGENVLEIRNSQFDGPTL 493
Query: 500 XXXXXXXXXXXXXFMINQXXXXXXXXXXXXXXXXXRIKNNNSGWLNXXXXXXXXXXXXXX 559
FM RIK NN
Sbjct: 494 APTLSLPWWSSPSFMTTHFSYPPPASVTLSVVS--RIKCNN------FFHAASSVVGKPT 545
Query: 560 IPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQY 602
PSG LAAVFH S+ Q+ Q S L+++LVYTPSGHVVQY
Sbjct: 546 FPSGCLAAVFHQSVPQESQ---SSSPALDYLLVYTPSGHVVQY 585
|
|
| TAIR|locus:2020853 ATG18G "AT1G03380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
Identities = 313/586 (53%), Positives = 370/586 (63%)
Query: 24 LIPNSLKFISSCIKTXXXXXXXXXXXXXXXXXXXXHEL------KDQVLWSSFDKLELSP 77
L+PNS K ISSC+KT + KDQV W+ F LEL
Sbjct: 12 LLPNSFKIISSCLKTVSANATNVASSVRSAGASVAASISAAEDDKDQVTWAGFGILELGQ 71
Query: 78 SSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137
+HVLLLGY NGFQV DVEDA+N +ELVS+R PV+FLQMQPLPA+S EGF NSHP
Sbjct: 72 HVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARSGDHEGFWNSHP 131
Query: 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR 197
LLLVVA DE +GL H L RDG + + G+ PT VRFYSLRSH+YV+VLR
Sbjct: 132 LLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYSLRSHSYVYVLR 191
Query: 198 FRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPM 257
FRS+V M+RCS R+VAVGLA QIYC DALTLE+KFSVLTYPVP QGT+ VN+GYGPM
Sbjct: 192 FRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQGTTRVNVGYGPM 251
Query: 258 AVGPRWLAYASNNPLLPNTGRXXXXXXXXXXXXXXXXXXNGN-LMARYAVESSKQLAAGL 316
AVGPRWLAYAS + + TGR G+ MARYA+ESSKQLA GL
Sbjct: 252 AVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYAMESSKQLANGL 311
Query: 317 INLGDMGYKTLSRYYQDFIPDGXXXXXXXXXXWKAGRNASHSSDTDIAGMVVVKDIVSRS 376
INLGDMGYKTLS+Y QD +PDG WK G SD + AGMV VKD+VS +
Sbjct: 312 INLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVG--GVSGSDAENAGMVAVKDLVSGA 369
Query: 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPXXXXXXXXXXXQTYDWTSS 436
++SQF+AHTSPISALCFD SGTLLVTAS+ GNNIN+F+IMP +Y+W SS
Sbjct: 370 LVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDL--SYEWESS 427
Query: 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDR 496
HVHL+KLHRG+TSA++QDICFS SQW+AI+SS+GTCHIFVL G + Q +
Sbjct: 428 HVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAFQPCEG--EE 485
Query: 497 PTXXXXXXXXXXXXXXFMINQXXXXXXXXXXXXXXXXXRIKNNNSGWLNXXXXXXXXXXX 556
PT NQ RIK ++ GWLN
Sbjct: 486 PTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVS--RIKYSSFGWLNTVSNATTAATG 543
Query: 557 XXXIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQY 602
+PSGA+AAVFH S+ DLQ L+S+ N LEH+LVYTPSGHVVQ+
Sbjct: 544 KVFVPSGAVAAVFHKSVTHDLQ-LNSRTNALEHILVYTPSGHVVQH 588
|
|
| TAIR|locus:2157523 G18F "AT5G54730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 111/293 (37%), Positives = 162/293 (55%)
Query: 192 YVHVLRFRSTVYMVRCSPRIVAVGLAAQIYC-FDALTLESKFSVLTYPVPH---FGGQGT 247
YV+ L+ +S V+ ++ I +V ++I A ++ F T + +
Sbjct: 164 YVYSLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDC-FDAATLEMDYRIVTNSIVC 222
Query: 248 SGVNIGYGPMAVGPRWLAYASNNPLLPNTGRXXXXXXXXXXXXXXXXXXNGNLMARYAVE 307
+ +GYGP+AVGPRW+AY+ + R + +A++A +
Sbjct: 223 GSLGVGYGPLAVGPRWIAYSGS--------RIATSSSAIFTSEIVSLSTSSPSVAQFARD 274
Query: 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGXXXXXXXXXXWKAGRNASHSSDTDIAGMV 367
SSKQLA+G+ NLGD GY++L++Y + +P+ G +D + GMV
Sbjct: 275 SSKQLASGIANLGDKGYRSLTKYCSEVLPNPYIPGLKGI-----GVGNEKVADAESIGMV 329
Query: 368 VVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPXXXXXXXXXX 427
+VKDI ++SVI+QF+AH SPISALCFD+SG LLVTASI G+NIN+FRIMP
Sbjct: 330 IVKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHNINVFRIMPTISTSRAVK- 388
Query: 428 XQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480
T++ HL++L RG T+AVIQDICFS S I + SSRGT H+F + P
Sbjct: 389 ------TTTFAHLFRLQRGFTNAVIQDICFSKDSNLIVVGSSRGTSHLFEINP 435
|
|
| UNIPROTKB|F1S209 BCAS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 3.6e-31, Sum P(3) = 3.6e-31
Identities = 50/139 (35%), Positives = 79/139 (56%)
Query: 360 DTDIAG---MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416
DT+ G ++V +D S +++ F AH P+ + F+ SG LLVT G++ ++F+I+
Sbjct: 319 DTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL 378
Query: 417 PXXXXXXXXXXXQTYDWTSSHV---HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473
T+ W+SS HLY LHRG T A +QDICFSH +W+ + + RGT
Sbjct: 379 -------------THPWSSSQSAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTS 425
Query: 474 HIFVLTPFGGETVLQIQNS 492
H+F + P+GG+ ++ S
Sbjct: 426 HVFPINPYGGQPCVRTHMS 444
|
|
| UNIPROTKB|F1P1V9 BCAS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 227 (85.0 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 50/138 (36%), Positives = 78/138 (56%)
Query: 359 SDTDIAGMVVV-KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMP 417
++T G V+V +D S +++ F AH PI + F+ SG LLVT G++ ++F+I+
Sbjct: 324 TETVAEGQVLVSEDSDSAGIVAHFPAHEKPICCMAFNPSGMLLVTTDTLGHDFHVFQIL- 382
Query: 418 XXXXXXXXXXXQTYDWTSSHV---HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCH 474
T+ W+SS HLY LHRG T A +QDI FSH +W+ + + RGT H
Sbjct: 383 ------------THPWSSSQSAVHHLYTLHRGETEAKVQDISFSHDCRWVVVSTLRGTSH 430
Query: 475 IFVLTPFGGETVLQIQNS 492
+F + P+GG+ ++ S
Sbjct: 431 VFPINPYGGQPCVRTHMS 448
|
|
| UNIPROTKB|Q9H6U6 BCAS3 "Breast carcinoma-amplified sequence 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 6.1e-31, Sum P(3) = 6.1e-31
Identities = 50/139 (35%), Positives = 79/139 (56%)
Query: 360 DTDIAG---MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416
DT+ G ++V +D S +++ F AH P+ + F+ SG LLVT G++ ++F+I+
Sbjct: 323 DTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL 382
Query: 417 PXXXXXXXXXXXQTYDWTSSHV---HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473
T+ W+SS HLY LHRG T A +QDICFSH +W+ + + RGT
Sbjct: 383 -------------THPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTS 429
Query: 474 HIFVLTPFGGETVLQIQNS 492
H+F + P+GG+ ++ S
Sbjct: 430 HVFPINPYGGQPCVRTHMS 448
|
|
| RGD|1560788 Bcas3 "breast carcinoma amplified sequence 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
Identities = 50/139 (35%), Positives = 79/139 (56%)
Query: 360 DTDIAG---MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416
DT+ G ++V +D S +++ F AH P+ + F+ SG LLVT G++ ++F+I+
Sbjct: 323 DTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL 382
Query: 417 PXXXXXXXXXXXQTYDWTSSHV---HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473
T+ W+SS HLY LHRG T A +QDICFSH +W+ + + RGT
Sbjct: 383 -------------THPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTS 429
Query: 474 HIFVLTPFGGETVLQIQNS 492
H+F + P+GG+ ++ S
Sbjct: 430 HVFPINPYGGQPCVRTHMS 448
|
|
| UNIPROTKB|F1LSC9 Bcas3 "Protein Bcas3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 9.1e-31, Sum P(3) = 9.1e-31
Identities = 50/139 (35%), Positives = 79/139 (56%)
Query: 360 DTDIAG---MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416
DT+ G ++V +D S +++ F AH P+ + F+ SG LLVT G++ ++F+I+
Sbjct: 323 DTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL 382
Query: 417 PXXXXXXXXXXXQTYDWTSSHV---HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473
T+ W+SS HLY LHRG T A +QDICFSH +W+ + + RGT
Sbjct: 383 -------------THPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTS 429
Query: 474 HIFVLTPFGGETVLQIQNS 492
H+F + P+GG+ ++ S
Sbjct: 430 HVFPINPYGGQPCVRTHMS 448
|
|
| MGI|MGI:2385848 Bcas3 "breast carcinoma amplified sequence 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 50/139 (35%), Positives = 79/139 (56%)
Query: 360 DTDIAG---MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416
DT+ G ++V +D S +++ F AH P+ + F+ SG LLVT G++ ++F+I+
Sbjct: 323 DTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL 382
Query: 417 PXXXXXXXXXXXQTYDWTSSHV---HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473
T+ W+SS HLY LHRG T A +QDICFSH +W+ + + RGT
Sbjct: 383 -------------THPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTS 429
Query: 474 HIFVLTPFGGETVLQIQNS 492
H+F + P+GG+ ++ S
Sbjct: 430 HVFPINPYGGQPCVRTHMS 448
|
|
| UNIPROTKB|F1N6R8 BCAS3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 50/139 (35%), Positives = 79/139 (56%)
Query: 360 DTDIAG---MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416
DT+ G ++V +D S +++ F AH P+ + F+ SG LLVT G++ ++F+I+
Sbjct: 223 DTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL 282
Query: 417 PXXXXXXXXXXXQTYDWTSSHV---HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473
T+ W+SS HLY LHRG T A +QDICFSH +W+ + + RGT
Sbjct: 283 -------------THPWSSSQSAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTS 329
Query: 474 HIFVLTPFGGETVLQIQNS 492
H+F + P+GG+ ++ S
Sbjct: 330 HVFPINPYGGQPCVRTHMS 348
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 627 | |||
| pfam12490 | 245 | pfam12490, BCAS3, Breast carcinoma amplified seque | 1e-29 |
| >gnl|CDD|221602 pfam12490, BCAS3, Breast carcinoma amplified sequence 3 | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 525 PLPVTLSVVSRIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSK- 583
P PVTLSVVSRIKN NSGWL TV+ ASS GK + SGA+A+VFH+ ++ + D
Sbjct: 1 PPPVTLSVVSRIKNGNSGWLGTVTGAASSATGKPLVVSGAVASVFHNCSGKNSESADGIK 60
Query: 584 VNDLEHVLVYTPSGHVVQYKLLSSIGGESSE 614
N +H+LV++PSGH++QY L S+GG+S E
Sbjct: 61 SNSKDHLLVFSPSGHLIQYLLRPSVGGDSGE 91
|
This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. Length = 245 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.91 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.89 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.89 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.87 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.85 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.84 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.83 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.83 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.81 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.81 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.81 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.81 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.8 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.8 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.8 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.79 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.78 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.78 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.78 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.77 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.77 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.76 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.76 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.75 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.75 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.75 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.75 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.74 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.73 | |
| PTZ00421 | 493 | coronin; Provisional | 99.72 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.72 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.71 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.71 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.71 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.71 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.71 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.71 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.69 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.69 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.68 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.68 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.68 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.68 | |
| PF12490 | 251 | BCAS3: Breast carcinoma amplified sequence 3 ; Int | 99.67 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.66 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.66 | |
| PTZ00420 | 568 | coronin; Provisional | 99.65 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.65 | |
| PTZ00421 | 493 | coronin; Provisional | 99.64 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.64 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.64 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.64 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.63 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.63 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.62 | |
| PTZ00420 | 568 | coronin; Provisional | 99.62 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.61 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.6 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.6 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.58 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.58 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.57 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.56 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.54 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.54 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.54 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.53 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.53 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.52 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.51 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.51 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.5 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.49 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.49 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.48 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.48 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.48 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.47 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.47 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.46 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.44 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.44 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.43 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.43 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.42 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.42 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.41 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.4 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.4 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.39 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.38 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.36 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.34 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.34 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.33 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.32 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.32 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.32 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.32 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.3 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.29 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.29 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.28 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.28 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.27 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.27 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.27 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.27 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.26 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.24 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.24 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.22 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.22 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.21 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.19 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.17 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.17 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.17 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.16 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.16 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.15 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.14 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.13 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.12 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.11 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.11 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.11 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.11 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.1 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.1 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.1 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.09 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.09 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.07 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.02 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.02 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.01 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.01 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.01 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.0 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 98.98 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.98 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.97 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.95 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.95 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.95 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.94 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 98.93 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 98.93 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.92 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.91 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.91 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.9 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.89 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.87 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.83 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.81 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.78 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.78 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.74 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.72 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 98.71 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.71 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.69 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.67 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.65 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.63 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.63 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.62 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.61 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.57 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.56 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.56 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.54 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.53 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.53 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.5 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.49 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.49 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.48 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.47 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.43 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.43 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.39 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.38 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.37 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.37 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.35 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.29 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.27 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.25 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.21 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.17 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.17 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.17 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.13 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.12 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.11 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.11 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.09 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.07 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.03 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.01 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.0 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.94 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.94 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.94 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 97.91 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.91 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.88 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.85 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.84 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 97.82 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.79 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 97.78 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.77 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.73 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.73 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 97.65 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.64 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.62 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.62 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.58 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.58 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.52 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.49 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.48 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.47 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.43 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.43 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.43 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.35 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.34 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.29 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.28 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.26 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.22 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.22 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.1 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.09 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.08 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.07 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.92 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.88 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.85 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 96.81 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.7 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.58 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.42 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.38 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 95.96 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 95.86 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.81 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 95.61 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 95.6 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 95.52 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 95.42 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 95.32 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 95.22 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.19 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 94.97 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 94.88 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.86 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 94.8 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.66 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 94.64 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 94.6 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 94.26 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.26 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 94.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.21 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.17 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 94.15 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 93.76 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.68 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 93.65 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 93.6 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 93.44 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 93.2 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 93.16 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 92.96 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 92.76 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.75 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.7 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 92.67 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 92.61 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 92.34 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 92.34 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 92.23 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 91.97 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 91.76 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 91.61 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 91.5 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 91.29 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 91.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.13 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 90.78 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 90.76 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.53 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 89.86 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 89.64 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 88.55 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 87.9 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 87.58 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 87.24 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 86.82 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 86.81 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 86.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.12 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 85.93 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 83.66 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 83.33 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 82.94 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 82.82 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 82.67 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 82.46 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 81.87 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 81.32 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 81.08 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 80.95 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 80.89 |
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=434.40 Aligned_cols=500 Identities=37% Similarity=0.463 Sum_probs=395.6
Q ss_pred cCchhHhhhccchhcchhhhhhhhhhhhhccCCCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCce
Q 046828 25 IPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVS 104 (627)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ 104 (627)
+|++||+||.|+|+.+|+++++.+|++++.+.+-++++|||+|++||+- +...++||+++|.+||||||+++..++.
T Consensus 1 ~p~s~~~vs~c~k~~ssg~~~~~~s~~~~~ss~~~e~~dqvlw~~fD~~---~~~~~~Vlll~~~~gfqv~d~~Dsp~vh 77 (788)
T KOG2109|consen 1 MPPSANSVSGCKKKNSSGHQRPQQSHQQTQSSPLPEEEDQVLWIKFDPK---PEVLEEVLLLNREEGFQVVDETDSPTVH 77 (788)
T ss_pred CCcccchhccchhhcccccccHHHHHHhhcCCCChhhhccccccccCCc---hhHHHHHHHHhhccCceEEeeccCCccc
Confidence 5899999999999999999999999999999999999999999999953 3456999999999999999999999999
Q ss_pred EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEE
Q 046828 105 ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRF 184 (627)
Q Consensus 105 ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~l 184 (627)
+.++.+||++.|.+|+++|..+...++|+..+|++|+|. +..+++.+. .++.|+..+. .+.-..+
T Consensus 78 ~~vs~~dd~~~f~sm~~~pl~sg~~~gf~ss~avpavv~---~t~S~p~I~-~S~~Gse~d~-----------t~an~~v 142 (788)
T KOG2109|consen 78 KEVSISDDLLDFSSMDKSPLSSGPDSGFESSDAVPAVVR---TTTSPPTIP-PSQTGSEQDS-----------TQANEMV 142 (788)
T ss_pred eeeeecCCcceecccCCCCccCCCCCccccCCceeeecc---cccCCCcCC-CCCCcceecc-----------cccccce
Confidence 999999999999999999999887788999999999875 222333222 1323332211 2344778
Q ss_pred EECCCCceEEEEecCCeEEEEEecCcEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceE
Q 046828 185 YSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWL 264 (627)
Q Consensus 185 wdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~L 264 (627)
+|+++..++|+|+|+ +|+|||+.|++..+.+++++.|.+ +++++|+++++++||+
T Consensus 143 ~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGplaVg~rWa 197 (788)
T KOG2109|consen 143 VDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPLAVGRRWA 197 (788)
T ss_pred eccccccchhccccc-------------------ccccccCcccCCchhhcccccccc------ceeeccccccceeeee
Confidence 999999999999997 899999999999999998887732 3567899999999999
Q ss_pred EEcCCCCCcCCCCccCCCCCCC-CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCc
Q 046828 265 AYASNNPLLPNTGRLSPQSLTP-PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPV 343 (627)
Q Consensus 265 Ay~~~~~~v~~~gr~~~q~~t~-~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~ 343 (627)
||+...+.. ++.+.+++ +.+++.+++.++..++.||++..|+++.+|.++||.||+.+++||.+..+++..+..
T Consensus 198 aya~~~a~~-----vss~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~g~gpgl 272 (788)
T KOG2109|consen 198 AYAQTLANQ-----VSSHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQIGTGPGL 272 (788)
T ss_pred eeccCcchh-----hhhccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCCCCCCCC
Confidence 999865431 22355666 778888888888899999999999999999999999999999999998888755443
Q ss_pred cCCCccccCcccccccCCCCCCe--EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCC
Q 046828 344 SSNSSWKAGRNASHSSDTDIAGM--VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSK 421 (627)
Q Consensus 344 s~~~~~~~g~~~~~~~~~~~dG~--V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~ 421 (627)
........|+...+.+.. --|+ +.+-|+.+...+.+|++|.+||++|+|+++|.+|++++..|+.|++|+++|....
T Consensus 273 gg~~~~~vGrvg~vsaes-V~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t 351 (788)
T KOG2109|consen 273 GGFEEVLVGRVGPVSAES-VLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCT 351 (788)
T ss_pred CCcCceecccccccccee-ecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEecccccc
Confidence 333322334433222222 2344 8889999999999999999999999999999999999999999999999976543
Q ss_pred CCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 422 GRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 422 ~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
.+.+.++..| + .||++.+.|++|+|+.+.+|++++|.+|+= |.+.+
T Consensus 352 --~~~~~qs~~~-----s----~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P~ls~ 397 (788)
T KOG2109|consen 352 --VNVSDQSLVV-----S----PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------PALSL 397 (788)
T ss_pred --cccccccccc-----c----hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------ccccc
Confidence 2221121211 1 589999999999999999999999966552 34556
Q ss_pred CccCCCCCCCccccccCCCCCCCCCCeeeeeeeeeecCCCCccccccccccccCCccCCCccceeeecccccccCCCccc
Q 046828 502 VLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLD 581 (627)
Q Consensus 502 ~~~~~~~~~~~~s~~q~~~~~~~p~~~~l~~~~~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~ 581 (627)
...+|+|..+..+...+.+ +++...+|...++++-.+. | .+++-.+++-.|.++-+.+|+++......
T Consensus 398 t~~lp~~A~~Sl~~gl~s~--g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~q--- 465 (788)
T KOG2109|consen 398 TCQLPAYADTSLDLGLQSS--GGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKANQ--- 465 (788)
T ss_pred ccccchhhchhhhcccccc--Ccccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccCc---
Confidence 6788999988888777776 4556778888888876544 1 23333445556777888888876554321
Q ss_pred ccccCcceEEEEcCCC-cEEEEEeeccCCCCcccc-ccce
Q 046828 582 SKVNDLEHVLVYTPSG-HVVQYKLLSSIGGESSEL-GKGL 619 (627)
Q Consensus 582 ~~~~~~~~l~v~~~~G-~l~~y~l~p~~~~~~~~~-~~~~ 619 (627)
+.+..+..|||+.|+| +++||.|.+..+|.--|. ..+.
T Consensus 466 ~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~ 505 (788)
T KOG2109|consen 466 GVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQR 505 (788)
T ss_pred cchhhhhheeeecCCCCceeEEEeeccCccceeeeccccc
Confidence 4457899999999999 999999999999988776 4443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=385.47 Aligned_cols=324 Identities=27% Similarity=0.467 Sum_probs=273.1
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+.+..+.+.+|++. ..+|.+|..+|+++|.+++.+ +..+...+.+.+++||... .||
T Consensus 3 ~~~~ti~~~~~Nqd-------~~~lsvGs~~Gyk~~~~~~~~---k~~~~~~~~~~IvEmLFSS-------------SLv 59 (391)
T KOG2110|consen 3 GKKPTINFIGFNQD-------STLLSVGSKDGYKIFSCSPFE---KCFSKDTEGVSIVEMLFSS-------------SLV 59 (391)
T ss_pred CCCcceeeeeeccc-------eeEEEccCCCceeEEecCchH---HhhcccCCCeEEEEeeccc-------------cee
Confidence 45677888889873 679999999999999999866 3566666788999999764 688
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEeCCe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQ 219 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~~~~ 219 (627)
|+|.- . -|+++++++.|.+..|+++.|+++|.+|++|+++|+|.+.++
T Consensus 60 aiV~~-------------------------~-------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~ 107 (391)
T KOG2110|consen 60 AIVSI-------------------------K-------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES 107 (391)
T ss_pred EEEec-------------------------C-------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc
Confidence 88751 1 138899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceeEEEEcC-CCCCCCCCCCcCcccccceeeEcC----ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 220 IYCFDALTLESKFSVLTY-PVPHFGGQGTSGVNIGYGPMAVGP----RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 220 I~i~D~~t~e~~~tl~~~-p~~~~~~~g~~~~~~~~~~iAl~~----r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
|||||+.+|+.+++|.+. |+| .+.+|+++ .+|||+++
T Consensus 108 IyIydI~~MklLhTI~t~~~n~-------------~gl~AlS~n~~n~ylAyp~s------------------------- 149 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNP-------------KGLCALSPNNANCYLAYPGS------------------------- 149 (391)
T ss_pred EEEEecccceeehhhhccCCCc-------------cceEeeccCCCCceEEecCC-------------------------
Confidence 999999999999999986 566 23344443 48888752
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
...|.|.|||+.+
T Consensus 150 -------------------------------------------------------------------~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 150 -------------------------------------------------------------------TTSGDVVLFDTIN 162 (391)
T ss_pred -------------------------------------------------------------------CCCceEEEEEccc
Confidence 1257899999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 375 RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
.+++..|.+|.++|.||+|+++|++|||||++||+||||.+. +| .++|+||||...+.|++
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~-------~G------------~kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP-------EG------------QKLYEFRRGTYPVSIYS 223 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-------Cc------------cEeeeeeCCceeeEEEE
Confidence 999999999999999999999999999999999999999994 34 38999999999888999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCccccccCCCCCCCCCCeeeeeee
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVS 534 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~~~~~~~p~~~~l~~~~ 534 (627)
|+|+||+++|+++|+.+|||||.++.... .|. ..|.
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~~~----------------~~~------------------~~p~---------- 259 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKVSN----------------NPP------------------ESPT---------- 259 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEeccccc----------------CCC------------------CCCC----------
Confidence 99999999999999999999999985320 000 0011
Q ss_pred eeecCCCCccccccccccccCCccCCCccceeeecccccccC--------CCccc--ccccCcceEEEEcCCCcEEEEEe
Q 046828 535 RIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQD--------LQPLD--SKVNDLEHVLVYTPSGHVVQYKL 604 (627)
Q Consensus 535 ~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--------~~~~~--~~~~~~~~l~v~~~~G~l~~y~l 604 (627)
...+|.+.+++++. +|+|+ +|+.++++.|.|. .++.| ..+++.++++|++.|||+|.|+|
T Consensus 260 ----~~~~~~~~~sk~~~-----sylps-~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 260 ----AGTSWFGKVSKAAT-----SYLPS-QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred ----CCCcccchhhhhhh-----hhcch-hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 23468899998875 38998 9999999999883 44666 46799999999999999999999
Q ss_pred eccCCCCccccc
Q 046828 605 LSSIGGESSELG 616 (627)
Q Consensus 605 ~p~~~~~~~~~~ 616 (627)
.|++||||..+.
T Consensus 330 ~~~~gGec~lik 341 (391)
T KOG2110|consen 330 PPKEGGECALIK 341 (391)
T ss_pred CCCCCceeEEEE
Confidence 999999999665
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=351.09 Aligned_cols=323 Identities=25% Similarity=0.333 Sum_probs=256.7
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
.-+.+-++|++. ..++++|.+.||+||++++.++-.+.-. +++....++|+... ++||+
T Consensus 5 ~~~~lsvs~NQD-------~ScFava~~~Gfriyn~~P~ke~~~r~~-~~~G~~~veMLfR~-------------N~laL 63 (346)
T KOG2111|consen 5 EPKTLSVSFNQD-------HSCFAVATDTGFRIYNCDPFKESASRQF-IDGGFKIVEMLFRS-------------NYLAL 63 (346)
T ss_pred cCceeEEEEccC-------CceEEEEecCceEEEecCchhhhhhhcc-ccCchhhhhHhhhh-------------ceEEE
Confidence 345566999874 5699999999999999999664222222 34448899999765 78998
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEeCCeEE
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIY 221 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~~~~I~ 221 (627)
|+ +| .+|.|.|++|.|||.....+|.++.|.++|.+|.+++++|||.++.+|+
T Consensus 64 VG------Gg---------------------~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~ 116 (346)
T KOG2111|consen 64 VG------GG---------------------SRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIY 116 (346)
T ss_pred ec------CC---------------------CCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEE
Confidence 86 22 1256889999999999999999999999999999999999999999999
Q ss_pred EEeCC-CCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC----ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 222 CFDAL-TLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP----RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 222 i~D~~-t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~----r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
+|... +.+.++.+++.++|. |+ +++.| ..|||++
T Consensus 117 VytF~~n~k~l~~~et~~NPk----Gl---------C~~~~~~~k~~LafPg---------------------------- 155 (346)
T KOG2111|consen 117 VYTFPDNPKLLHVIETRSNPK----GL---------CSLCPTSNKSLLAFPG---------------------------- 155 (346)
T ss_pred EEEcCCChhheeeeecccCCC----ce---------EeecCCCCceEEEcCC----------------------------
Confidence 99988 788899999988872 33 33322 3455543
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~ 376 (627)
-..|.|+|-|+...+
T Consensus 156 -----------------------------------------------------------------~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 156 -----------------------------------------------------------------FKTGQVQIVDLASTK 170 (346)
T ss_pred -----------------------------------------------------------------CccceEEEEEhhhcC
Confidence 134788998887765
Q ss_pred E--EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 377 V--ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 377 ~--l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
. ...+.||.++|.|++++.+|++|||||.+||+|||||.. +|+ +++++|||...|.|++
T Consensus 171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~-------~g~------------~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE-------DGT------------LLQELRRGVDRADIYC 231 (346)
T ss_pred cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC-------CCc------------EeeeeecCCchheEEE
Confidence 4 478999999999999999999999999999999999987 553 8999999999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCccccccCCCCCCCCCCeeeeeee
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVS 534 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~~~~~~~p~~~~l~~~~ 534 (627)
|+||||+.|||++|++||+|||.+...... .+.|++.. .+...+|+|++|+||++||+++.
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~--~~~~SSl~-----~~~~~lpky~~S~wS~~~f~l~~------------ 292 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENT--EDESSSLS-----FKRLVLPKYFSSEWSFAKFQLPQ------------ 292 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecCCCC--cccccccc-----ccccccchhcccceeEEEEEccC------------
Confidence 999999999999999999999999864321 22332211 12257899999999999999831
Q ss_pred eeecCCCCccccccccccccCCccCCCccceeeecccccccCCCcccccccCcceEEEEcCCCcEEEEEeeccCCCCccc
Q 046828 535 RIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQYKLLSSIGGESSE 614 (627)
Q Consensus 535 ~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~y~l~p~~~~~~~~ 614 (627)
+ + .++++ |.+ + ...+++++.||..+.|.|+|.+||||.+
T Consensus 293 ----~---------------------~-~~~~~-fg~------~--------~nsvi~i~~Dgsy~k~~f~~~~~g~~~~ 331 (346)
T KOG2111|consen 293 ----G---------------------T-QCIIA-FGS------E--------TNTVIAICADGSYYKFKFDPKNGGESSR 331 (346)
T ss_pred ----C---------------------C-cEEEE-ecC------C--------CCeEEEEEeCCcEEEEEeccccccchhh
Confidence 1 1 25554 322 2 1489999999999999999999999997
Q ss_pred ccc
Q 046828 615 LGK 617 (627)
Q Consensus 615 ~~~ 617 (627)
..-
T Consensus 332 ~~~ 334 (346)
T KOG2111|consen 332 HEY 334 (346)
T ss_pred hhh
Confidence 543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=206.41 Aligned_cols=331 Identities=17% Similarity=0.159 Sum_probs=219.6
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCC-CCC-CCCcCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAK-SDG-QEGFRN 134 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~-~~~-~D~f~~ 134 (627)
.-..|.|.|+.+.|.- .++.++..+-|.++++||+++.. ..-.+..|+--|-++.+.|.-.. ..+ +|+
T Consensus 110 S~~GH~e~Vl~~~fsp------~g~~l~tGsGD~TvR~WD~~TeT-p~~t~KgH~~WVlcvawsPDgk~iASG~~dg--- 179 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP------TGSRLVTGSGDTTVRLWDLDTET-PLFTCKGHKNWVLCVAWSPDGKKIASGSKDG--- 179 (480)
T ss_pred ccCCCCCcEEEEEecC------CCceEEecCCCceEEeeccCCCC-cceeecCCccEEEEEEECCCcchhhccccCC---
Confidence 3456889999999952 34778888889999999999844 45667789999999999886533 111 132
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCC-------CCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEE
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQP-------GNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVR 206 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~ 206 (627)
- +..||-.++.-.+.++..+.--+..=.|+|.. .++..-++.|+|||++.++++.++..++ +|.+|+
T Consensus 180 ---~--I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 180 ---S--IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR 254 (480)
T ss_pred ---e--EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEE
Confidence 1 23354321111011110000000001133332 2233448999999999999999998665 999999
Q ss_pred ecC-cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceE-EEcCCCCCcCCCCccCCCC
Q 046828 207 CSP-RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWL-AYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 207 ~s~-~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~L-Ay~~~~~~v~~~gr~~~q~ 283 (627)
+-. .+|.++. +.+|++|++.++.+.+++.+|... ++.++++..+. -.+.-++ .|+..
T Consensus 255 wGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahw-------------vN~lalsTdy~LRtgaf~~----t~~~~--- 314 (480)
T KOG0271|consen 255 WGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHW-------------VNHLALSTDYVLRTGAFDH----TGRKP--- 314 (480)
T ss_pred EcCCceEEecCCCceEEEEEccchhHHHhhcccchh-------------eeeeeccchhhhhcccccc----ccccC---
Confidence 985 7888876 457999999999999999998653 56677765321 1111111 11110
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
. +++ -..+-|.+.-..+ +++.+ -++ .+++.
T Consensus 315 --------~-~~s---e~~~~Al~rY~~~------~~~~~----------------------------erl----VSgsD 344 (480)
T KOG0271|consen 315 --------K-SFS---EEQKKALERYEAV------LKDSG----------------------------ERL----VSGSD 344 (480)
T ss_pred --------C-ChH---HHHHHHHHHHHHh------hccCc----------------------------cee----EEecC
Confidence 0 000 0111111111000 00000 011 24678
Q ss_pred CCeEEEEECC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIV-SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
|.++.+|+-. +.+++..+.+|..-|..+.|||||+++|+||-|.. |++||-. +|. .+..
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~-------tGk------------~las 404 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGR-------TGK------------FLAS 404 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCC-------Ccc------------hhhh
Confidence 9999999965 45688999999999999999999999999999976 8999975 553 3444
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
| |||- +.|+.|+||.|++.|+++|.|.|++||++....-...+-+|...|
T Consensus 405 f-RGHv-~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 405 F-RGHV-AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred h-hhcc-ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence 4 8885 459999999999999999999999999999887766676775543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-22 Score=221.34 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=140.2
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+.+||+|++.|..++-.++.+. ||++|+|+| -+.|++..+ +.++|.....+.++.+.+|-.- +
T Consensus 472 D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD-------------V 538 (707)
T KOG0263|consen 472 DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD-------------V 538 (707)
T ss_pred CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc-------------c
Confidence 4789999999999999999665 999999998 577777655 5889988776666666555321 2
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
.++++.| +.. |
T Consensus 539 ~cv~FHP-------Ns~----------------------------------------------------------Y---- 549 (707)
T KOG0263|consen 539 DCVSFHP-------NSN----------------------------------------------------------Y---- 549 (707)
T ss_pred ceEEECC-------ccc----------------------------------------------------------c----
Confidence 3333322 110 0
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
.+.++.|.+||+||+.++..+..|.+|..||.+|+|||+|++||+|++||. |+|||
T Consensus 550 -----------------------~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWD 605 (707)
T KOG0263|consen 550 -----------------------VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWD 605 (707)
T ss_pred -----------------------cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEE
Confidence 013457889999999999999999999999999999999999999999997 89999
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+. +| .+....+||+ +.|++|.||.||..||+++.|.+|++||+...
T Consensus 606 l~-------~~-------------~~v~~l~~Ht-~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LA-------NG-------------SLVKQLKGHT-GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cC-------CC-------------cchhhhhccc-CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 95 33 3344447884 56999999999999999999999999998754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=207.92 Aligned_cols=268 Identities=15% Similarity=0.179 Sum_probs=204.5
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
.+....-+|..|.|-. .+..+++.+.++..+||.+++. +....+-.|.+.|..+.+-|... .
T Consensus 170 SQ~gd~rPis~~~fS~------ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~------~----- 231 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSR------DSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDS------D----- 231 (459)
T ss_pred hhccCCCcceeeEeec------CCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCC------c-----
Confidence 3444456788888854 2367888888999999999987 44566667888888888877530 0
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVA 213 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~La 213 (627)
--||.+ ..+++|++|++.+.+++..|+.+ ..|-.|+|+| ++|+
T Consensus 232 ~~lat~----------------------------------s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~ 277 (459)
T KOG0272|consen 232 LNLATA----------------------------------SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLG 277 (459)
T ss_pred cceeee----------------------------------ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceee
Confidence 112322 13588999999999999999965 4999999988 8998
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++. +.+-++||+.|.+++.-.++|..+ +-. +||-.+.
T Consensus 278 TasfD~tWRlWD~~tk~ElL~QEGHs~~-------------v~~-------iaf~~DG---------------------- 315 (459)
T KOG0272|consen 278 TASFDSTWRLWDLETKSELLLQEGHSKG-------------VFS-------IAFQPDG---------------------- 315 (459)
T ss_pred ecccccchhhcccccchhhHhhcccccc-------------cce-------eEecCCC----------------------
Confidence 886 557899999999988888888653 112 2333221
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+++ .+++.|..-+|||+
T Consensus 316 ------SL~---------------------------------------------------------~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 316 ------SLA---------------------------------------------------------ATGGLDSLGRVWDL 332 (459)
T ss_pred ------cee---------------------------------------------------------eccCccchhheeec
Confidence 110 13456777899999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+++++..|.+|..+|..|+|+|+|..|||+|.|++ ++|||+. . . ..+|.. -+|++ .|
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR-~-------r-----------~~ly~i-pAH~n-lV 390 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLR-M-------R-----------SELYTI-PAHSN-LV 390 (459)
T ss_pred ccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeec-c-------c-----------ccceec-ccccc-hh
Confidence 999999999999999999999999999999999998 8999996 1 1 145555 46654 59
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCc
Q 046828 453 QDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVL 503 (627)
Q Consensus 453 ~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~ 503 (627)
..+.|+| -|++|+++|.|+|++||.-........+.+|...|-.-...|..
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 9999999 88999999999999999999888888899998766543334443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=203.09 Aligned_cols=240 Identities=20% Similarity=0.194 Sum_probs=182.3
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..|.++|-.+.|--.+ +...+...++|+.+++|+++....+.++.+ |...|.-|+|-|.- .+
T Consensus 214 ~gH~~~v~~~~fhP~~----~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-H~~RVs~VafHPsG-------------~~ 275 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVD----SDLNLATASADGTVKLWKLSQETPLQDLEG-HLARVSRVAFHPSG-------------KF 275 (459)
T ss_pred eccccceeeEEEccCC----CccceeeeccCCceeeeccCCCcchhhhhc-chhhheeeeecCCC-------------ce
Confidence 3466777777774321 235788899999999999998655555443 43444445554432 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVG 215 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~ 215 (627)
|+.. +.+.+-++||++|++++.-.+.++ .|++|+|.+ -++++|
T Consensus 276 L~Ta----------------------------------sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 276 LGTA----------------------------------SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeec----------------------------------ccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 5432 235778999999999999888776 999999987 577776
Q ss_pred -eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 216 -LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 216 -~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
++.--+|||++|++++..+.+|..+ +-.+++ .++
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~-------------I~~V~f-------sPN------------------------- 356 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKE-------------ILSVAF-------SPN------------------------- 356 (459)
T ss_pred CccchhheeecccCcEEEEecccccc-------------eeeEeE-------CCC-------------------------
Confidence 4556789999999999999998654 212333 221
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
||+ .++++.|++++|||+..
T Consensus 357 ----------------------------Gy~--------------------------------lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 357 ----------------------------GYH--------------------------------LATGSSDNTCKVWDLRM 376 (459)
T ss_pred ----------------------------ceE--------------------------------EeecCCCCcEEEeeecc
Confidence 111 12356899999999999
Q ss_pred CeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEE
Q 046828 375 RSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~ 453 (627)
.+.+.+|.+|.+-|+.|+|+| .|.+|+|||-|++ ++||... +++ .+..| .||+. +|.
T Consensus 377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~-------~~~------------~~ksL-aGHe~-kV~ 434 (459)
T KOG0272|consen 377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTR-------TWS------------PLKSL-AGHEG-KVI 434 (459)
T ss_pred cccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCC-------Ccc------------cchhh-cCCcc-ceE
Confidence 999999999999999999999 8999999999998 7999864 221 34444 68874 799
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEE
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
+++.|+|++++++++.|.|+++|.
T Consensus 435 s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-18 Score=169.31 Aligned_cols=251 Identities=19% Similarity=0.229 Sum_probs=181.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.++++|..+.|... .+.+++.+.++.+++||+.... ....+..|...+..+.+.|.. .+|
T Consensus 7 ~h~~~i~~~~~~~~------~~~l~~~~~~g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-------------~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPD------GKLLATGSGDGTIKVWDLETGE-LLRTLKGHTGPVRDVAASADG-------------TYL 66 (289)
T ss_pred ccCCCEEEEEEcCC------CCEEEEeecCcEEEEEEeeCCC-cEEEEecCCcceeEEEECCCC-------------CEE
Confidence 46788999998642 2556666668889999999754 344555666776666665432 345
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~ 216 (627)
+++. .++.|++||+++++.+..+..+ ..|.++.+++ ++++++.
T Consensus 67 ~~~~----------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 112 (289)
T cd00200 67 ASGS----------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112 (289)
T ss_pred EEEc----------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec
Confidence 4322 1367999999998888888754 4899999987 6777777
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++....+..|..+ .. .+++.+....
T Consensus 113 ~~~~i~~~~~~~~~~~~~~~~~~~~-------------i~-------~~~~~~~~~~----------------------- 149 (289)
T cd00200 113 RDKTIKVWDVETGKCLTTLRGHTDW-------------VN-------SVAFSPDGTF----------------------- 149 (289)
T ss_pred CCCeEEEEECCCcEEEEEeccCCCc-------------EE-------EEEEcCcCCE-----------------------
Confidence 789999999988877777654332 11 2233321100
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
+ ..+..+|.|++||+.++
T Consensus 150 -------------------------------l-------------------------------~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 150 -------------------------------V-------------------------------ASSSQDGTIKLWDLRTG 167 (289)
T ss_pred -------------------------------E-------------------------------EEEcCCCcEEEEEcccc
Confidence 0 01235789999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
+.+..+..|..+|.+++|+|+|+.|++++.+|. |++||+. .+. .+..+ .++. ..|.++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~-------~~~------------~~~~~-~~~~-~~i~~~ 225 (289)
T cd00200 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLS-------TGK------------CLGTL-RGHE-NGVNSV 225 (289)
T ss_pred ccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECC-------CCc------------eecch-hhcC-CceEEE
Confidence 999999999999999999999999999999997 7999985 221 23322 2333 359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
+|++|++++++++.+|++++|++........+..|.
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 999999999999889999999998655444444443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=186.73 Aligned_cols=253 Identities=16% Similarity=0.200 Sum_probs=190.5
Q ss_pred hhhhhhhhccC-C----------CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCce
Q 046828 46 AGASVAASISG-D----------SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV 114 (627)
Q Consensus 46 ~~~s~~~~~~~-~----------~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V 114 (627)
|..+..++|.. + -..|+.-|.-..|+.+.+.+ ..+++...+-|+.++|||+.-.. ...+++.|-.+|
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~V 250 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-PCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASV 250 (480)
T ss_pred hccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC-CccceecccCCCCEEEEEccCce-EEEEeccCccce
Confidence 34467777763 1 12366778888998876654 34677778889999999999754 466778899999
Q ss_pred EEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEE
Q 046828 115 TFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVH 194 (627)
Q Consensus 115 ~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~ 194 (627)
+|+++=-. .||+. | +.+++|++|+...|.+.+
T Consensus 251 TCvrwGG~--------------gliyS------------------------g----------S~DrtIkvw~a~dG~~~r 282 (480)
T KOG0271|consen 251 TCVRWGGE--------------GLIYS------------------------G----------SQDRTIKVWRALDGKLCR 282 (480)
T ss_pred EEEEEcCC--------------ceEEe------------------------c----------CCCceEEEEEccchhHHH
Confidence 99887321 24431 1 125899999999999999
Q ss_pred EEecCC-eEEEEEec-------------Cc-------------------------EEEEEeCC-eEEEEeCCCCc-eeEE
Q 046828 195 VLRFRS-TVYMVRCS-------------PR-------------------------IVAVGLAA-QIYCFDALTLE-SKFS 233 (627)
Q Consensus 195 tL~f~s-~V~sV~~s-------------~~-------------------------~LaV~~~~-~I~i~D~~t~e-~~~t 233 (627)
+|+.++ +|..+++| .+ +||++.++ ++++|+....+ .+..
T Consensus 283 ~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r 362 (480)
T KOG0271|consen 283 ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR 362 (480)
T ss_pred hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh
Confidence 999665 99999998 12 47777665 78888755433 4445
Q ss_pred EEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh
Q 046828 234 VLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ 311 (627)
Q Consensus 234 l~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~ 311 (627)
+.+|... ++-++++| ||+|.++
T Consensus 363 mtgHq~l-------------Vn~V~fSPd~r~IASaS------------------------------------------- 386 (480)
T KOG0271|consen 363 MTGHQAL-------------VNHVSFSPDGRYIASAS------------------------------------------- 386 (480)
T ss_pred hhchhhh-------------eeeEEECCCccEEEEee-------------------------------------------
Confidence 5566442 33445544 5665543
Q ss_pred hhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEE
Q 046828 312 LAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISAL 391 (627)
Q Consensus 312 l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~l 391 (627)
.|..|++||-.+++.++.|++|-.+|+.+
T Consensus 387 ---------------------------------------------------FDkSVkLW~g~tGk~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 387 ---------------------------------------------------FDKSVKLWDGRTGKFLASFRGHVAAVYQV 415 (480)
T ss_pred ---------------------------------------------------cccceeeeeCCCcchhhhhhhccceeEEE
Confidence 56779999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCC
Q 046828 392 CFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG 471 (627)
Q Consensus 392 aFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg 471 (627)
+|+.|.++|+++|.|.| ++|||+. . .++..-.-||. ..|+++.|||||+.+|+++.|.
T Consensus 416 awsaDsRLlVS~SkDsT-LKvw~V~-t-------------------kKl~~DLpGh~-DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 416 AWSADSRLLVSGSKDST-LKVWDVR-T-------------------KKLKQDLPGHA-DEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred EeccCccEEEEcCCCce-EEEEEee-e-------------------eeecccCCCCC-ceEEEEEecCCCceeecCCCce
Confidence 99999999999999987 7999996 1 13443336775 3599999999999999999999
Q ss_pred eEEEEE
Q 046828 472 TCHIFV 477 (627)
Q Consensus 472 TvhIw~ 477 (627)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=164.43 Aligned_cols=235 Identities=17% Similarity=0.243 Sum_probs=170.4
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
...+..+.|.. ..+.+++.+.++.++|||+..... ...+..+++.+.++.+.+.. .+++.
T Consensus 51 ~~~i~~~~~~~------~~~~l~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-------------~~~~~ 110 (289)
T cd00200 51 TGPVRDVAASA------DGTYLASGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSVAFSPDG-------------RILSS 110 (289)
T ss_pred CcceeEEEECC------CCCEEEEEcCCCeEEEEEcCcccc-eEEEeccCCcEEEEEEcCCC-------------CEEEE
Confidence 34454555542 125677788899999999997543 33444567777777776541 44432
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-C
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-A 217 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~ 217 (627)
+. .++.|++||+++++.+..+. +...|.++.+++ ++|+++. +
T Consensus 111 -~~---------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 111 -SS---------------------------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred -ec---------------------------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 20 12679999999999998888 556899999998 6777777 7
Q ss_pred CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCC
Q 046828 218 AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSN 297 (627)
Q Consensus 218 ~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~ 297 (627)
+.|++||+.+++.+..+..+..+ ...+ ++.++...
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~-------------i~~~-------~~~~~~~~------------------------- 191 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGE-------------VNSV-------AFSPDGEK------------------------- 191 (289)
T ss_pred CcEEEEEccccccceeEecCccc-------------cceE-------EECCCcCE-------------------------
Confidence 79999999988877776654322 1122 22221100
Q ss_pred CcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE
Q 046828 298 GNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV 377 (627)
Q Consensus 298 gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~ 377 (627)
+ + .+..+|.|++||+.+++.
T Consensus 192 --------------l--------------~--------------------------------~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 192 --------------L--------------L--------------------------------SSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred --------------E--------------E--------------------------------EecCCCcEEEEECCCCce
Confidence 0 0 122478999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
+..+..|..+|.+++|+|++.++++++.+|+ |++||+. .+ ..+..+. ++. ..|.+++|
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~-------~~------------~~~~~~~-~~~-~~i~~~~~ 269 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLR-------TG------------ECVQTLS-GHT-NSVTSLAW 269 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcC-------Cc------------eeEEEcc-ccC-CcEEEEEE
Confidence 9999899999999999999999999998998 7999985 22 1344443 443 35999999
Q ss_pred ccCCCEEEEEeCCCeEEEEE
Q 046828 458 SHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~ 477 (627)
++++++|++++.||+++||+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 99999999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=172.13 Aligned_cols=267 Identities=19% Similarity=0.226 Sum_probs=178.4
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
-.++..|||.+++.|...++. ....+...|+.|.-+++-|.- .+||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-C~rTiqh~dsqVNrLeiTpdk-------------~~LAaa~----------------- 59 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-CSRTIQHPDSQVNRLEITPDK-------------KDLAAAG----------------- 59 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-EEEEEecCccceeeEEEcCCc-------------chhhhcc-----------------
Confidence 456668999999999999855 456666778988888876542 4455422
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEecC-CeEEEEEec--CcEEEEEe-CCeEEEEeCCCCceeEEE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLRFR-STVYMVRCS--PRIVAVGL-AAQIYCFDALTLESKFSV 234 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~f~-s~V~sV~~s--~~~LaV~~-~~~I~i~D~~t~e~~~tl 234 (627)
| -.||+||++++. ++.+++.+ ..|.+|.|- .|.+.+|. ++.++|||++...+.+.+
T Consensus 60 -------~-----------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~ 121 (311)
T KOG0315|consen 60 -------N-----------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY 121 (311)
T ss_pred -------C-----------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc
Confidence 1 349999999886 48888866 589888886 48888876 558999999997654433
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhh
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQL 312 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l 312 (627)
.++.| ++.+.+.| --|-.+..+.-+..|.-.. ..++..- -|+.+
T Consensus 122 -~~~sp-------------Vn~vvlhpnQteLis~dqsg~irvWDl~~-~~c~~~l-----iPe~~-------------- 167 (311)
T KOG0315|consen 122 -QHNSP-------------VNTVVLHPNQTELISGDQSGNIRVWDLGE-NSCTHEL-----IPEDD-------------- 167 (311)
T ss_pred -cCCCC-------------cceEEecCCcceEEeecCCCcEEEEEccC-Ccccccc-----CCCCC--------------
Confidence 23333 44555655 2344455444444332110 0000000 00000
Q ss_pred hcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC------eEEEEeccCCC
Q 046828 313 AAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR------SVISQFRAHTS 386 (627)
Q Consensus 313 ~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~------~~l~~~~aH~~ 386 (627)
.-.++++ ..|||+ ..+.+...|...+|++-+. +++..|++|..
T Consensus 168 ---------~~i~sl~-----v~~dgs-----------------ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 168 ---------TSIQSLT-----VMPDGS-----------------MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG 216 (311)
T ss_pred ---------cceeeEE-----EcCCCc-----------------EEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence 0001111 012221 1123457899999998765 57888999999
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
-|....||||+++|||+|.|.+ ++||+++.. -++-....|+.. .+++.+||.||+||++
T Consensus 217 ~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~-------------------~kle~~l~gh~r-WvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKT-VKIWNTDDF-------------------FKLELVLTGHQR-WVWDCAFSADGEYLVT 275 (311)
T ss_pred eEEEEEECCCCcEEEeecCCce-EEEEecCCc-------------------eeeEEEeecCCc-eEEeeeeccCccEEEe
Confidence 9999999999999999999987 799998511 122222346543 5999999999999999
Q ss_pred EeCCCeEEEEEcCCCC
Q 046828 467 VSSRGTCHIFVLTPFG 482 (627)
Q Consensus 467 ~S~dgTvhIw~i~~~g 482 (627)
++.|+++|+|++....
T Consensus 276 assd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 276 ASSDHTARLWDLSAGK 291 (311)
T ss_pred cCCCCceeecccccCc
Confidence 9999999999997644
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-18 Score=178.29 Aligned_cols=283 Identities=14% Similarity=0.185 Sum_probs=201.1
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
..+|....|+. ++..+...-|++-+++|+.+- +....++.|.|||-.+++...- .+|+.
T Consensus 235 nkdVT~L~Wn~------~G~~LatG~~~G~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G-------------~yilS 293 (524)
T KOG0273|consen 235 NKDVTSLDWNN------DGTLLATGSEDGEARIWNKDG--NLISTLGQHKGPIFSLKWNKKG-------------TYILS 293 (524)
T ss_pred cCCcceEEecC------CCCeEEEeecCcEEEEEecCc--hhhhhhhccCCceEEEEEcCCC-------------CEEEe
Confidence 34455555542 224455555666699999884 4477889999999888875432 44442
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeE-EEEEecC-cEEEE-EeCC
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTV-YMVRCSP-RIVAV-GLAA 218 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V-~sV~~s~-~~LaV-~~~~ 218 (627)
+| .++++.+||..+|+.-..+.|++.. .+|.+-. .-+|+ +.++
T Consensus 294 --------~~--------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~ 339 (524)
T KOG0273|consen 294 --------GG--------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG 339 (524)
T ss_pred --------cc--------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc
Confidence 11 2478999999999999999999855 8888854 44444 4677
Q ss_pred eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 219 QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 219 ~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
.|++|-+.--+...++.+|.++ ++.+-..| .+||.++++.++.+|.+....
T Consensus 340 ~i~V~kv~~~~P~~t~~GH~g~-------------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-------------- 392 (524)
T KOG0273|consen 340 CIHVCKVGEDRPVKTFIGHHGE-------------VNALKWNPTGSLLASCSDDGTLKIWSMGQSN-------------- 392 (524)
T ss_pred eEEEEEecCCCcceeeecccCc-------------eEEEEECCCCceEEEecCCCeeEeeecCCCc--------------
Confidence 8999998877788899998876 55666775 699999999999988653100
Q ss_pred CCcccchhhhhh-hhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 297 NGNLMARYAVES-SKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 297 ~gs~v~~~a~~~-~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
.. -.+.. .|++ |. -.| .|+|.... ..|..-+ .+.+..|++|++||+..+
T Consensus 393 ----~~-~~l~~Hskei----~t----------~~w---sp~g~v~~----n~~~~~~----l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 393 ----SV-HDLQAHSKEI----YT----------IKW---SPTGPVTS----NPNMNLM----LASASFDSTVKLWDVESG 442 (524)
T ss_pred ----ch-hhhhhhccce----ee----------Eee---cCCCCccC----CCcCCce----EEEeecCCeEEEEEccCC
Confidence 00 00111 1221 11 112 23331110 0011111 135678999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
.+++.|..|+.||++|+|+|+|++||+||.||- |+||++. .+ .+++-.+|. ..|..+
T Consensus 443 v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~-------~~-------------~l~~s~~~~--~~Ifel 499 (524)
T KOG0273|consen 443 VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTK-------TG-------------KLVKSYQGT--GGIFEL 499 (524)
T ss_pred ceeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEecccc-------ch-------------heeEeecCC--CeEEEE
Confidence 999999999999999999999999999999997 7999985 33 466665654 359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcC
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+|+.+|..|+++-.||.+.+-++.
T Consensus 500 ~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 500 CWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999998874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=168.63 Aligned_cols=224 Identities=14% Similarity=0.138 Sum_probs=176.3
Q ss_pred CCCeEEEEeccCcEEEEecCCC--C---CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcce
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDA--T---NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLV 153 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~--~---~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~ 153 (627)
++.-|...|.+|-.-||++... + .+...|..|.|-+.+++++... .| ++ ++|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--------------~i--lT-----~SG-- 164 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--------------HI--LT-----GSG-- 164 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--------------ce--Ee-----cCC--
Confidence 4578899999999999999854 2 3445567788999999998632 22 22 122
Q ss_pred eeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC---cEEEEEe-CCeEEEEeCCCC
Q 046828 154 HVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP---RIVAVGL-AAQIYCFDALTL 228 (627)
Q Consensus 154 ~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~ 228 (627)
+.|.-+||+++|+.+..+..+. -|.++.++| +..++|. +...++||++.+
T Consensus 165 -------------------------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 165 -------------------------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred -------------------------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 3789999999999999998554 999999987 6777764 667999999999
Q ss_pred ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhh
Q 046828 229 ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVES 308 (627)
Q Consensus 229 e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~ 308 (627)
.+.+++.+|..- ++.+.+.|.--|+
T Consensus 220 ~c~qtF~ghesD-------------INsv~ffP~G~af------------------------------------------ 244 (343)
T KOG0286|consen 220 QCVQTFEGHESD-------------INSVRFFPSGDAF------------------------------------------ 244 (343)
T ss_pred ceeEeecccccc-------------cceEEEccCCCee------------------------------------------
Confidence 999999988642 3444442211111
Q ss_pred hhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC--CC
Q 046828 309 SKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH--TS 386 (627)
Q Consensus 309 ~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH--~~ 386 (627)
+.++.|+++++||++..++++.|... ..
T Consensus 245 --------------------------------------------------atGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 245 --------------------------------------------------ATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred --------------------------------------------------eecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 13578999999999999999998833 46
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
+|++++||-+|++|..+-.|.+ ++|||.. .+ .+.-.| .||.+ +|.+|..+|||.-||+
T Consensus 275 gitSv~FS~SGRlLfagy~d~~-c~vWDtl-------k~------------e~vg~L-~GHeN-RvScl~~s~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFT-CNVWDTL-------KG------------ERVGVL-AGHEN-RVSCLGVSPDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCc-eeEeecc-------cc------------ceEEEe-eccCC-eeEEEEECCCCcEEEe
Confidence 8999999999999999999988 7999987 23 244445 58875 7999999999999999
Q ss_pred EeCCCeEEEEE
Q 046828 467 VSSRGTCHIFV 477 (627)
Q Consensus 467 ~S~dgTvhIw~ 477 (627)
+|-|.+++||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=182.92 Aligned_cols=237 Identities=17% Similarity=0.211 Sum_probs=177.0
Q ss_pred CCeEEEEeccCcEEEEecCCCC--CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeec
Q 046828 80 FKHVLLLGYSNGFQVLDVEDAT--NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHV 157 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~--~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~ 157 (627)
++.+.....++.+.+|+..... ..+++ ..|+-.|+-+.+.|.. -.| +++
T Consensus 171 g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~-------------~~l--~s~------------- 221 (456)
T KOG0266|consen 171 GRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDG-------------SYL--LSG------------- 221 (456)
T ss_pred CCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCC-------------cEE--EEe-------------
Confidence 3556667788899999997655 33333 6677778888887754 222 321
Q ss_pred cCcccccCCCCCCCCCCCCcCCcEEEEEEC-CCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeE
Q 046828 158 GRDGLVRDGYDEPQPGNVAMSPTAVRFYSL-RSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKF 232 (627)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl-~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~ 232 (627)
..+.+|+|||+ ..+..+++++ +...|+++.|++ ++|++|. ++.|+|||+.+++++.
T Consensus 222 -------------------s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 222 -------------------SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred -------------------cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE
Confidence 12478999999 5558999998 456999999998 6777775 5589999999999999
Q ss_pred EEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhh
Q 046828 233 SVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQL 312 (627)
Q Consensus 233 tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l 312 (627)
.+.+|..+ +..+ ++..+...
T Consensus 283 ~l~~hs~~-------------is~~-------~f~~d~~~---------------------------------------- 302 (456)
T KOG0266|consen 283 KLKGHSDG-------------ISGL-------AFSPDGNL---------------------------------------- 302 (456)
T ss_pred eeeccCCc-------------eEEE-------EECCCCCE----------------------------------------
Confidence 99888654 2222 33332100
Q ss_pred hcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe--EEEEeccCCCC--e
Q 046828 313 AAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS--VISQFRAHTSP--I 388 (627)
Q Consensus 313 ~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~--~l~~~~aH~~~--I 388 (627)
+ .+++.||.|+|||+.++. ++..+..+..+ +
T Consensus 303 --------------l-------------------------------~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 303 --------------L-------------------------------VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPV 337 (456)
T ss_pred --------------E-------------------------------EEcCCCccEEEEECCCCceeeeecccCCCCCCce
Confidence 0 023569999999999998 67788887665 9
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC--cEEEEEEccCCCEEEE
Q 046828 389 SALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA--VIQDICFSHYSQWIAI 466 (627)
Q Consensus 389 s~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a--~I~sIaFSpDg~~Las 466 (627)
++++|+|+|.+|+++..|++ +++||+. .+ ......+|+... .+.+..++++++|+.+
T Consensus 338 ~~~~fsp~~~~ll~~~~d~~-~~~w~l~-------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASLDRT-LKLWDLR-------SG-------------KSVGTYTGHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred eEEEECCCCcEEEEecCCCe-EEEEEcc-------CC-------------cceeeecccCCcceeEecccccCCCCeEEE
Confidence 99999999999999999998 7999996 22 122233566554 4677778999999999
Q ss_pred EeCCCeEEEEEcCCCCCeeecccc
Q 046828 467 VSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 467 ~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
++.|++|++|++........+..|
T Consensus 397 g~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EeCCceEEEEeCCccchhhhhcCC
Confidence 999999999999987777777777
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=195.06 Aligned_cols=227 Identities=15% Similarity=0.249 Sum_probs=164.0
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
..+++.++++.++|||+..... ...+..|.+.|..+.+.|.- + .+|+..+
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~-~~~~~~H~~~V~~l~~~p~~-------~-----~~L~Sgs----------------- 595 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSAD-------P-----TLLASGS----------------- 595 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeE-EEEecCCCCCEEEEEEcCCC-------C-----CEEEEEc-----------------
Confidence 5688888999999999997543 44556788999999987531 1 3444321
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCc-eeEEEE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLE-SKFSVL 235 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e-~~~tl~ 235 (627)
.+++|++||+++++.+.++..+..|.++.+++ .+|++|. ++.|++||+.+.+ .+.++.
T Consensus 596 -----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 596 -----------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred -----------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 23789999999999999999888999999953 6777775 5689999998765 344555
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|..+ + .++++.... .
T Consensus 659 ~h~~~-------------V-------~~v~f~~~~-~------------------------------------------- 674 (793)
T PLN00181 659 GHSKT-------------V-------SYVRFVDSS-T------------------------------------------- 674 (793)
T ss_pred CCCCC-------------E-------EEEEEeCCC-E-------------------------------------------
Confidence 55432 1 123332100 0
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC------CeEEEEeccCCCCeE
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS------RSVISQFRAHTSPIS 389 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s------~~~l~~~~aH~~~Is 389 (627)
+ .+++.|+.|+|||+.. .+.+..|.+|...+.
T Consensus 675 -----------l-------------------------------vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 675 -----------L-------------------------------VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred -----------E-------------------------------EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 0 0235789999999974 357889999999999
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe-----ec----CCcCcEEEEEEccC
Q 046828 390 ALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH-----RG----MTSAVIQDICFSHY 460 (627)
Q Consensus 390 ~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~-----rG----~t~a~I~sIaFSpD 460 (627)
+++|+|+|.+||+++.||+ |+||+.. .. .. ...+.+. .| .....|.+++|++|
T Consensus 713 ~v~~s~~~~~lasgs~D~~-v~iw~~~-~~------~~----------~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNE-VFVYHKA-FP------MP----------VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred EEEEcCCCCEEEEEeCCCE-EEEEECC-CC------Cc----------eEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 9999999999999999998 7999964 11 00 0111110 00 11234999999999
Q ss_pred CCEEEEEeCCCeEEEEEc
Q 046828 461 SQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 461 g~~Las~S~dgTvhIw~i 478 (627)
++.|++++.+|+|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-17 Score=164.32 Aligned_cols=259 Identities=13% Similarity=0.125 Sum_probs=184.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|-.+|+...|-. +.++++....|+-+-|||.-+... ...+..+.-.|-.+++.|.. .++
T Consensus 53 GH~~Ki~~~~ws~------Dsr~ivSaSqDGklIvWDs~TtnK-~haipl~s~WVMtCA~sPSg-------------~~V 112 (343)
T KOG0286|consen 53 GHLNKIYAMDWST------DSRRIVSASQDGKLIVWDSFTTNK-VHAIPLPSSWVMTCAYSPSG-------------NFV 112 (343)
T ss_pred ccccceeeeEecC------CcCeEEeeccCCeEEEEEcccccc-eeEEecCceeEEEEEECCCC-------------CeE
Confidence 3556777777643 348899999999999999987553 34455455555555555543 454
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC--c----eEEEEe-cCCeEEEEEecC--c
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH--N----YVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~--~----~V~tL~-f~s~V~sV~~s~--~ 210 (627)
| + +| .++...||++++. + ..++|. +.+-+-+++|-. .
T Consensus 113 A--c------GG--------------------------LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ 158 (343)
T KOG0286|consen 113 A--C------GG--------------------------LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH 158 (343)
T ss_pred E--e------cC--------------------------cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc
Confidence 3 2 23 2477889999876 2 344565 445788888876 4
Q ss_pred EEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 211 IVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 211 ~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
+|..+.+.+..+||+++++....+.+|..- +-.+++ ++.+
T Consensus 159 ilT~SGD~TCalWDie~g~~~~~f~GH~gD-------------V~slsl-------~p~~-------------------- 198 (343)
T KOG0286|consen 159 ILTGSGDMTCALWDIETGQQTQVFHGHTGD-------------VMSLSL-------SPSD-------------------- 198 (343)
T ss_pred eEecCCCceEEEEEcccceEEEEecCCccc-------------EEEEec-------CCCC--------------------
Confidence 555556678999999999999999888542 112222 2210
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
++ .| .+++-|+..+||
T Consensus 199 -------~n-----------------------------------------------------tF----vSg~cD~~aklW 214 (343)
T KOG0286|consen 199 -------GN-----------------------------------------------------TF----VSGGCDKSAKLW 214 (343)
T ss_pred -------CC-----------------------------------------------------eE----Eecccccceeee
Confidence 00 01 135678999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
|++.+..+..|.+|.+.|++|+|.|+|.-+||+|+|++ .|+||+.-..+ ..+|+ .-....
T Consensus 215 D~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~-----------------~a~ys--~~~~~~ 274 (343)
T KOG0286|consen 215 DVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQE-----------------LAVYS--HDSIIC 274 (343)
T ss_pred eccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcE-----------------Eeeec--cCcccC
Confidence 99999999999999999999999999999999999998 89999962110 12333 111234
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDR 496 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~ 496 (627)
.|.+++||-.|++|.++-.|.+++|||.-...-.-.+..|...+..
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvSc 320 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSC 320 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEE
Confidence 5999999999999999999999999998654444467788766544
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-19 Score=177.11 Aligned_cols=246 Identities=17% Similarity=0.230 Sum_probs=185.6
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
-..+++.+++.|.|.- + .+++.+|.++.++++|++... .+.+..|+++|+++...+.-
T Consensus 49 ~~~~~~~plL~c~F~d----~---~~~~~G~~dg~vr~~Dln~~~--~~~igth~~~i~ci~~~~~~------------- 106 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFAD----E---STIVTGGLDGQVRRYDLNTGN--EDQIGTHDEGIRCIEYSYEV------------- 106 (323)
T ss_pred hheecCCceeeeeccC----C---ceEEEeccCceEEEEEecCCc--ceeeccCCCceEEEEeeccC-------------
Confidence 3567889999999952 2 679999999999999999877 78999999999999987542
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEe
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGL 216 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~ 216 (627)
.. +++ |+|| ++|+|||.|....+.++.-...|+++..+..+|+||.
T Consensus 107 ~~--vIs----------------------gsWD----------~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~ 152 (323)
T KOG1036|consen 107 GC--VIS----------------------GSWD----------KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGT 152 (323)
T ss_pred Ce--EEE----------------------cccC----------ccEEEEeccccccccccccCceEEEEeccCCEEEEee
Confidence 12 232 5676 7899999999888888887789999999999999975
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
+.+|.+||+++++..++..+.+. ++++..+++-|.-=+|.-. ++.||++.+.+.+.
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~l-----------kyqtR~v~~~pn~eGy~~s----SieGRVavE~~d~s-------- 209 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSL-----------KYQTRCVALVPNGEGYVVS----SIEGRVAVEYFDDS-------- 209 (323)
T ss_pred cCceEEEEEcccccchhhhccccc-----------eeEEEEEEEecCCCceEEE----eecceEEEEccCCc--------
Confidence 45799999999988776655443 3567777776643333322 25688876665542
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
....-.+||++++.+.-++..-+..++..++++++ ++|+ +++.||.|.+||+.++
T Consensus 210 -~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~--------------------~tfa----TgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 210 -EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH--------------------GTFA----TGGSDGIVNIWDLFNR 264 (323)
T ss_pred -hHHhhhceeEEeeecccCCceEEEEeceeEecccc--------------------ceEE----ecCCCceEEEccCcch
Confidence 12334679999988765554333333333333322 3333 5789999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~d 406 (627)
+.+.+|..-...|..|+|+.||.+||+|+..
T Consensus 265 Krl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 265 KRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred hhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 9999999888889999999999999999864
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-19 Score=176.56 Aligned_cols=257 Identities=18% Similarity=0.245 Sum_probs=192.4
Q ss_pred hhhhhhhhhhhhhccC-CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEE
Q 046828 41 SGVRSAGASVAASISG-DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQM 119 (627)
Q Consensus 41 ~~~~~~~~s~~~~~~~-~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~ 119 (627)
.|||-=-..-++.... ....+..+|+.++|.. ++.+|++.|.|+..++||+..++ ...+..|+++|+++++
T Consensus 50 ~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd------dgskVf~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~pvkt~~w 121 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD------DGSKVFSGGCDKQAKLWDLASGQ--VSQVAAHDAPVKTCHW 121 (347)
T ss_pred CceEEEEEecCCcccchhhhccCCCeEEEEEcc------CCceEEeeccCCceEEEEccCCC--eeeeeecccceeEEEE
Confidence 4777655554445554 3456778999999963 23789999999999999999976 6788999999999999
Q ss_pred eeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC
Q 046828 120 QPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR 199 (627)
Q Consensus 120 lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~ 199 (627)
.+.+.. ++| ++ |+|| ++|++||+|+..++.+++++
T Consensus 122 v~~~~~-----------~cl--~T----------------------GSWD----------KTlKfWD~R~~~pv~t~~LP 156 (347)
T KOG0647|consen 122 VPGMNY-----------QCL--VT----------------------GSWD----------KTLKFWDTRSSNPVATLQLP 156 (347)
T ss_pred ecCCCc-----------cee--Ee----------------------cccc----------cceeecccCCCCeeeeeecc
Confidence 877632 343 33 5676 88999999999999999999
Q ss_pred CeEEEEEecCcEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCC
Q 046828 200 STVYMVRCSPRIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNT 276 (627)
Q Consensus 200 s~V~sV~~s~~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~ 276 (627)
.+||++++-..++||++++ .|.+|+++....++.....|. ++++..+|+-. ..-|.++ +.
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpL-----------k~Q~R~va~f~d~~~~alGs------iE 219 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPL-----------KWQTRCVACFQDKDGFALGS------IE 219 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcc-----------cceeeEEEEEecCCceEeee------ec
Confidence 9999999999999999877 599999988766655444443 24566666643 2224443 57
Q ss_pred CccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh---hhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCc
Q 046828 277 GRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ---LAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGR 353 (627)
Q Consensus 277 gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~---l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~ 353 (627)
||+.+|+..++.. ...+.++++++ ....+|.+.++.++.++ |.
T Consensus 220 Grv~iq~id~~~~-----------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-----------------------gt 265 (347)
T KOG0647|consen 220 GRVAIQYIDDPNP-----------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-----------------------GT 265 (347)
T ss_pred ceEEEEecCCCCc-----------cCceeEEEeccCCCCCCceEEecceEeeccc-----------------------ce
Confidence 8888888776411 12345566554 22336777766655443 22
Q ss_pred ccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC
Q 046828 354 NASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI 405 (627)
Q Consensus 354 ~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~ 405 (627)
++ ..+.||+...||-.....+...+.|..||+|-+|+.+|.++|-|..
T Consensus 266 lv----TaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 266 LV----TAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EE----EecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 32 4578999999999998889999999999999999999999998863
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-17 Score=164.76 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=159.2
Q ss_pred CCcEEEEEECC-----CCceEEEEecCC-eEEEEEecC--c-EEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCc
Q 046828 178 SPTAVRFYSLR-----SHNYVHVLRFRS-TVYMVRCSP--R-IVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTS 248 (627)
Q Consensus 178 ~~~tV~lwdl~-----t~~~V~tL~f~s-~V~sV~~s~--~-~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~ 248 (627)
.++++.+|+|. .|..++.++.++ .|.++.+++ . .|..+-++++++||+.+++..+.+.+|..-
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d-------- 107 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD-------- 107 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc--------
Confidence 35889999875 466788898765 899999987 3 444556789999999999999999998753
Q ss_pred CcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcc-ee
Q 046828 249 GVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMG-YK 325 (627)
Q Consensus 249 ~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g-~~ 325 (627)
+-.+|+++ |-|..++.+.++.+|-.+..+ .+.+++.+ ..
T Consensus 108 -----Vlsva~s~dn~qivSGSrDkTiklwnt~g~c---------------------------------k~t~~~~~~~~ 149 (315)
T KOG0279|consen 108 -----VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC---------------------------------KYTIHEDSHRE 149 (315)
T ss_pred -----eEEEEecCCCceeecCCCcceeeeeeecccE---------------------------------EEEEecCCCcC
Confidence 33466655 888889888887776443111 11111111 00
Q ss_pred EEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC
Q 046828 326 TLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI 405 (627)
Q Consensus 326 ~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~ 405 (627)
-++-. -++|+.. ... ..+++.|++|+|||+.+.+....|.+|+.-++.++|||||.++++|..
T Consensus 150 WVscv-----------rfsP~~~--~p~----Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 150 WVSCV-----------RFSPNES--NPI----IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred cEEEE-----------EEcCCCC--CcE----EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC
Confidence 01100 0111100 001 135789999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 406 HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 406 dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
||. +.+||+. .+ .++|.+.- ...|.+++|+|+--||+.+...+ |+||++++..
T Consensus 213 dg~-~~LwdL~-------~~------------k~lysl~a---~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~ 265 (315)
T KOG0279|consen 213 DGE-AMLWDLN-------EG------------KNLYSLEA---FDIVNSLCFSPNRYWLCAATATS-IKIWDLESKA 265 (315)
T ss_pred Cce-EEEEEcc-------CC------------ceeEeccC---CCeEeeEEecCCceeEeeccCCc-eEEEeccchh
Confidence 998 7999996 23 37887742 24699999999999999887665 9999998753
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-19 Score=180.25 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=176.8
Q ss_pred hhccCCCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCC
Q 046828 52 ASISGDSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEG 131 (627)
Q Consensus 52 ~~~~~~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~ 131 (627)
..|+.. .+.-+.|+..-+|. .+++.+-.|++++|||.++.. ...++..|.|.|=|+++--
T Consensus 188 ~rinc~-Se~skgVYClQYDD--------~kiVSGlrDnTikiWD~n~~~-c~~~L~GHtGSVLCLqyd~---------- 247 (499)
T KOG0281|consen 188 QRINCR-SENSKGVYCLQYDD--------EKIVSGLRDNTIKIWDKNSLE-CLKILTGHTGSVLCLQYDE---------- 247 (499)
T ss_pred eeecCC-cccCCceEEEEecc--------hhhhcccccCceEEeccccHH-HHHhhhcCCCcEEeeeccc----------
Confidence 345543 23556777777762 456667779999999999855 4667788999998888741
Q ss_pred cCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecCc
Q 046828 132 FRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSPR 210 (627)
Q Consensus 132 f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~~ 210 (627)
.+ ++. | .++.||++||..||+++++|-++. .|..++|+..
T Consensus 248 -----rv--iis-------G-------------------------SSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng 288 (499)
T KOG0281|consen 248 -----RV--IVS-------G-------------------------SSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG 288 (499)
T ss_pred -----eE--EEe-------c-------------------------CCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC
Confidence 22 233 1 135889999999999999998664 9999999999
Q ss_pred EEEEEeCC-eEEEEeCCCCce---eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCC
Q 046828 211 IVAVGLAA-QIYCFDALTLES---KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTP 286 (627)
Q Consensus 211 ~LaV~~~~-~I~i~D~~t~e~---~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~ 286 (627)
+++++..+ .|.+||+..... .+.+.+|-.. ++.+.++.+++..
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa-------------VNvVdfd~kyIVs-------------------- 335 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKYIVS-------------------- 335 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhhh-------------eeeeccccceEEE--------------------
Confidence 99888765 699999875432 2333444321 2333333333322
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe
Q 046828 287 PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 287 ~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~ 366 (627)
++.|-+
T Consensus 336 --------------------------------------------------------------------------ASgDRT 341 (499)
T KOG0281|consen 336 --------------------------------------------------------------------------ASGDRT 341 (499)
T ss_pred --------------------------------------------------------------------------ecCCce
Confidence 346789
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
|++||+.+.+.+.++.+|...|.|+.+. |+++++||.|.| ||+||+. .|. ++. ...|
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDnt-IRlwdi~-------~G~------------cLR-vLeG 398 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIE-------CGA------------CLR-VLEG 398 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCce-EEEEecc-------ccH------------HHH-HHhc
Confidence 9999999999999999999999999885 999999999988 8999996 442 333 3367
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
|.. -|.+|-| |.+.+++|..||+|+||++..-
T Consensus 399 HEe-LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 399 HEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred hHH-hhhheee--cCceeeeccccceEEEEecccc
Confidence 753 4899988 5578999999999999999753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=163.71 Aligned_cols=233 Identities=16% Similarity=0.185 Sum_probs=164.4
Q ss_pred CCcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCCeEEEEeCCCCce--eEEEEcCCCCCCCCCCCcCccc
Q 046828 178 SPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAAQIYCFDALTLES--KFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~--~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
.+.|||||.+.||.+..++++.. .|..+.+++ +.||++.--.|++||+.+... +.++++|..-
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kN------------ 85 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKN------------ 85 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCc------------
Confidence 46899999999999999999865 899999987 788998888999999998764 6677776431
Q ss_pred ccceee--EcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 253 GYGPMA--VGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 253 ~~~~iA--l~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+..+. ..+||+..++.+.++++|.-.+++ +.+.. + .. .+++..
T Consensus 86 -VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-------------------------~qR~~-~----~~----spVn~v 130 (311)
T KOG0315|consen 86 -VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-------------------------CQRNY-Q----HN----SPVNTV 130 (311)
T ss_pred -eEEEEEeecCeEEEecCCCceEEEEeccCcc-------------------------cchhc-c----CC----CCcceE
Confidence 22233 357999999999888877543211 00000 0 00 000000
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCCE
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA-HTSPISALCFDRSGTLLVTASIHGNN 409 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~ 409 (627)
-..+++ ++...++++|.|+|||+.+....+.+.+ -..+|.+|+..|||++|+.+-.+|+
T Consensus 131 -----------vlhpnQ--------teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~- 190 (311)
T KOG0315|consen 131 -----------VLHPNQ--------TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN- 190 (311)
T ss_pred -----------EecCCc--------ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-
Confidence 000111 1223578999999999998876666554 3568999999999999999999998
Q ss_pred EEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC-CCeeecc
Q 046828 410 INIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF-GGETVLQ 488 (627)
Q Consensus 410 I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~-gg~~~~~ 488 (627)
..||++.. +.. .+....+.++ +-|+ .-|..+-||||+++||++|.|.|++||+++.+ ..+..++
T Consensus 191 cyvW~l~~-------~~~------~s~l~P~~k~-~ah~-~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~ 255 (311)
T KOG0315|consen 191 CYVWRLLN-------HQT------ASELEPVHKF-QAHN-GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT 255 (311)
T ss_pred EEEEEccC-------CCc------cccceEhhhe-eccc-ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee
Confidence 79999962 110 1122334444 2232 23899999999999999999999999999988 5666677
Q ss_pred cccc
Q 046828 489 IQNS 492 (627)
Q Consensus 489 ~h~s 492 (627)
.|+.
T Consensus 256 gh~r 259 (311)
T KOG0315|consen 256 GHQR 259 (311)
T ss_pred cCCc
Confidence 7754
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-17 Score=181.42 Aligned_cols=191 Identities=20% Similarity=0.273 Sum_probs=148.8
Q ss_pred CCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC--cEEEEEeCC-eEEEEeC-CCCceeEEEEcCCCCCCCCCCCcCc
Q 046828 178 SPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP--RIVAVGLAA-QIYCFDA-LTLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 178 ~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~-~t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
.++++++|++.+.+ ..+++. +...|.+++|++ ++|+.+..+ +|+|||+ ..+..++++.+|+..
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~---------- 248 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY---------- 248 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc----------
Confidence 35789999998887 777774 555999999997 677777654 8999999 556888999999765
Q ss_pred ccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 251 NIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 251 ~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+..+ +|.+... + +
T Consensus 249 ---v~~~-------~f~p~g~----------------------------~--------------------------i--- 261 (456)
T KOG0266|consen 249 ---VTSV-------AFSPDGN----------------------------L--------------------------L--- 261 (456)
T ss_pred ---eEEE-------EecCCCC----------------------------E--------------------------E---
Confidence 2223 3333110 0 0
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEE
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNI 410 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I 410 (627)
.+++.|++|+|||+.+++++..+.+|..+|++++|++||.+|+++|.||. |
T Consensus 262 ----------------------------~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i 312 (456)
T KOG0266|consen 262 ----------------------------VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-I 312 (456)
T ss_pred ----------------------------EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc-E
Confidence 13568999999999999999999999999999999999999999999997 8
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC-cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccc
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA-VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQI 489 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a-~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~ 489 (627)
+|||+. ++. ..+.+...+.... .+..+.|+|++++|++++.|+++++|++...........
T Consensus 313 ~vwd~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 313 RVWDLE-------TGS-----------KLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred EEEECC-------CCc-----------eeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 999986 331 0123333455555 699999999999999999999999999987665556666
Q ss_pred ccc
Q 046828 490 QNS 492 (627)
Q Consensus 490 h~s 492 (627)
|..
T Consensus 375 ~~~ 377 (456)
T KOG0266|consen 375 HSN 377 (456)
T ss_pred cCC
Confidence 644
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8e-18 Score=173.37 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=147.0
Q ss_pred cEEEEEECCC-CceEEEEecCC-eEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 180 TAVRFYSLRS-HNYVHVLRFRS-TVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 180 ~tV~lwdl~t-~~~V~tL~f~s-~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
-.+++||..+ .++++++..++ .|-+|.|-| +.|+++. +..|+.||..|+.+++++.+|+-. +
T Consensus 172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew-------------v 238 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW-------------V 238 (406)
T ss_pred cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh-------------E
Confidence 3499999987 67788776554 788888876 7777776 557999999999999999776542 3
Q ss_pred ceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
..+.+.. +.+|
T Consensus 239 r~v~v~~DGti~A------------------------------------------------------------------- 251 (406)
T KOG0295|consen 239 RMVRVNQDGTIIA------------------------------------------------------------------- 251 (406)
T ss_pred EEEEecCCeeEEE-------------------------------------------------------------------
Confidence 3333311 1111
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC---------------C
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS---------------G 397 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd---------------G 397 (627)
+++.|.+|++|-+.++++...++.|..||-+++|-|. |
T Consensus 252 ---------------------------s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 252 ---------------------------SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred ---------------------------ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCc
Confidence 3457789999999999999999999999999999875 4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 398 TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 398 ~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.+|+++|.|++ |++||+. +| .+|.+| -||.+ .|.+++|+|-|+||+++.+|+|+|||+
T Consensus 305 ~~l~s~SrDkt-Ik~wdv~-------tg------------~cL~tL-~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 305 QVLGSGSRDKT-IKIWDVS-------TG------------MCLFTL-VGHDN-WVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred cEEEeecccce-EEEEecc-------CC------------eEEEEE-ecccc-eeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 69999999998 8999995 34 488888 68876 599999999999999999999999999
Q ss_pred cCCCCCeeecccccc
Q 046828 478 LTPFGGETVLQIQNS 492 (627)
Q Consensus 478 i~~~gg~~~~~~h~s 492 (627)
++......++..|.-
T Consensus 363 l~~~~cmk~~~ah~h 377 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEH 377 (406)
T ss_pred eccceeeeccCCCcc
Confidence 998777766666643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-16 Score=184.13 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=132.3
Q ss_pred CcEEEEEECCCCceEEEEec-CCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
+++|+|||+.+++.+.+++. ...|++|+|++ .+|+++. ++.|++||+.+++.+.++..+..
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~-------------- 619 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-------------- 619 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC--------------
Confidence 47899999999999999974 45899999985 5777765 56899999999988777754311
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+. .+++.+.+ +..
T Consensus 620 v~-------~v~~~~~~---------------------------g~~--------------------------------- 632 (793)
T PLN00181 620 IC-------CVQFPSES---------------------------GRS--------------------------------- 632 (793)
T ss_pred eE-------EEEEeCCC---------------------------CCE---------------------------------
Confidence 11 12222110 000
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS-VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINI 412 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~-~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~V 412 (627)
+ +.++.||.|++||+.+.+ .+..+.+|..+|.+++|. ++.+|+|++.||+ |+|
T Consensus 633 --------------------l----atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-iki 686 (793)
T PLN00181 633 --------------------L----AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKL 686 (793)
T ss_pred --------------------E----EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEE
Confidence 0 124578999999998765 577889999999999997 7889999999998 899
Q ss_pred EeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 413 wdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
||+.... .+. ....+..+ .||+. .|..++|++++++||+++.|++|+||+..
T Consensus 687 Wd~~~~~----~~~---------~~~~l~~~-~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 687 WDLSMSI----SGI---------NETPLHSF-MGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EeCCCCc----ccc---------CCcceEEE-cCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 9985211 000 00134444 57754 58999999999999999999999999965
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=176.30 Aligned_cols=227 Identities=19% Similarity=0.300 Sum_probs=162.2
Q ss_pred eEEEEeccC--cEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 82 HVLLLGYSN--GFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 82 ~vl~~Gy~~--G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.-+++|+.+ .+-||+.....=+.+..+ |--.+.++++.|.. -+||. ++
T Consensus 320 DWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDg-------------q~iaT-G~--------------- 369 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDG-------------QLIAT-GA--------------- 369 (893)
T ss_pred CEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCC-------------cEEEe-cc---------------
Confidence 356666666 688999987543333222 33445677776643 34432 11
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cE-EEEEeCCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RI-VAVGLAAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~-LaV~~~~~I~i~D~~t~e~~~tl~ 235 (627)
.+++|+|||..+|-++.|+. +.+.|..|.|+. +. |..+++++|+.||+.-.++-+++.
T Consensus 370 ------------------eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 370 ------------------EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred ------------------CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence 24789999999999999997 667999999975 44 455689999999999888776664
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCc-eEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPR-WLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r-~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
. |.| .+...+|+.|. -|.+++
T Consensus 432 ~-P~p-----------~QfscvavD~sGelV~AG---------------------------------------------- 453 (893)
T KOG0291|consen 432 S-PEP-----------IQFSCVAVDPSGELVCAG---------------------------------------------- 453 (893)
T ss_pred C-CCc-----------eeeeEEEEcCCCCEEEee----------------------------------------------
Confidence 3 443 22334444321 011110
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEEC
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFD 394 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFs 394 (627)
+-..=.|.||++++|+.+-.+.+|.+||.+|+|+
T Consensus 454 ----------------------------------------------~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 454 ----------------------------------------------AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred ----------------------------------------------ccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 0112258999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEE
Q 046828 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCH 474 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvh 474 (627)
|+|..||++|=|.| ||+||+... .|+ +...+. ...+..++|+|||+-||+++.||-|-
T Consensus 488 ~~~~~LaS~SWDkT-VRiW~if~s-----~~~-----------vEtl~i-----~sdvl~vsfrPdG~elaVaTldgqIt 545 (893)
T KOG0291|consen 488 PDGSLLASGSWDKT-VRIWDIFSS-----SGT-----------VETLEI-----RSDVLAVSFRPDGKELAVATLDGQIT 545 (893)
T ss_pred cccCeEEeccccce-EEEEEeecc-----Cce-----------eeeEee-----ccceeEEEEcCCCCeEEEEEecceEE
Confidence 99999999999988 899999621 121 122222 23589999999999999999999999
Q ss_pred EEEcCCCC
Q 046828 475 IFVLTPFG 482 (627)
Q Consensus 475 Iw~i~~~g 482 (627)
+|+++.-.
T Consensus 546 f~d~~~~~ 553 (893)
T KOG0291|consen 546 FFDIKEAV 553 (893)
T ss_pred EEEhhhce
Confidence 99997643
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-17 Score=171.59 Aligned_cols=196 Identities=19% Similarity=0.302 Sum_probs=137.7
Q ss_pred CcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
++.+|||+. .|..+.+|.+ +.||.++++|+ .+|+++ -++++.+||+.+++..+.+.-|..|
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------- 320 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------- 320 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--------------
Confidence 477999984 7888889975 56999999997 455555 5778999999999877666554432
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
++.-.|.-.-
T Consensus 321 ---~lDVdW~~~~------------------------------------------------------------------- 330 (524)
T KOG0273|consen 321 ---ALDVDWQSND------------------------------------------------------------------- 330 (524)
T ss_pred ---ccceEEecCc-------------------------------------------------------------------
Confidence 1111222110
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
.|+ ..+.||.|+|+-+...+++.+|.+|..+|++|.|+|.|.+|+|+|+||| ++||.
T Consensus 331 ------------------~F~----ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs 387 (524)
T KOG0273|consen 331 ------------------EFA----TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWS 387 (524)
T ss_pred ------------------eEe----ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeee
Confidence 011 2457899999999999999999999999999999999999999999999 79998
Q ss_pred CCCCCCC---------------CCCCCCccccCC---------CCceeEEEEEeecC-------CcCcEEEEEEccCCCE
Q 046828 415 IMPSSSK---------------GRSGSASQTYDW---------TSSHVHLYKLHRGM-------TSAVIQDICFSHYSQW 463 (627)
Q Consensus 415 i~p~~~~---------------~~~g~~~~~~~~---------~~~~~~l~~l~rG~-------t~a~I~sIaFSpDg~~ 463 (627)
....... .++|.... ..+ ....++++...+|. +...|++++|||||++
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~-n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTS-NPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccC-CCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcE
Confidence 6422110 00111100 000 00123344333331 1245999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCC
Q 046828 464 IAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 464 Las~S~dgTvhIw~i~~~gg 483 (627)
||+|+.||.||||++....-
T Consensus 467 lAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EEecCCCCeeEeccccchhe
Confidence 99999999999999976543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-17 Score=167.24 Aligned_cols=251 Identities=15% Similarity=0.197 Sum_probs=181.9
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccC-cEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSN-GFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~-G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+.+.|..+.||.. .++|+.+... .+++||.+..-+....+..|+-.|..+.++|.. ..|
T Consensus 149 Ht~sv~di~~~a~-------Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-------------d~i 208 (406)
T KOG0295|consen 149 HTDSVFDISFDAS-------GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-------------DHI 208 (406)
T ss_pred cccceeEEEEecC-------ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-------------Cee
Confidence 3344666666532 3555555444 499999998655667778888889999999874 234
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~ 216 (627)
+.+. -+++|+.|++.+|.++.++..+ .+|..|+.+. .++|++.
T Consensus 209 lS~s----------------------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 209 LSCS----------------------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred eecc----------------------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 3321 2478999999999999999855 4999999997 6777776
Q ss_pred CC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 AA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 ~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
.+ ++++|-+.+++++..+++|..| +-.++ +++.... |.++-++
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~-------------vEci~-------wap~~~~--------------~~i~~at-- 298 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHP-------------VECIA-------WAPESSY--------------PSISEAT-- 298 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccc-------------eEEEE-------ecccccC--------------cchhhcc--
Confidence 44 7999999999888888887655 22333 3332100 0000000
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
|.++ .|.+ ...++.|++|++||+.++
T Consensus 299 ----------------------------------------~~~~-----------~~~~---l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 299 ----------------------------------------GSTN-----------GGQV---LGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred ----------------------------------------CCCC-----------CccE---EEeecccceEEEEeccCC
Confidence 0000 0111 124678999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
.++.++.+|.+.|..++|+|-|++|+++.+|++ +||||+. +++ +...+. -+ ..-|.++
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~-------~~~------------cmk~~~-ah-~hfvt~l 382 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLK-------NLQ------------CMKTLE-AH-EHFVTSL 382 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEec-------cce------------eeeccC-CC-cceeEEE
Confidence 999999999999999999999999999999998 7999996 232 333332 22 2359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEE
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~ 477 (627)
+|..+.-++++|+-|.|+++|.
T Consensus 383 Dfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ecCCCCceEEeccccceeeeee
Confidence 9999999999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-16 Score=165.02 Aligned_cols=328 Identities=16% Similarity=0.200 Sum_probs=207.4
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
|..=|..++|.- ++.++...|.|+.+.+||=.+++.+-|+-. .|+|.+..+.+.|.. .-
T Consensus 189 HskFV~~VRysP------DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-------------~~ 249 (603)
T KOG0318|consen 189 HSKFVNCVRYSP------DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-------------TQ 249 (603)
T ss_pred cccceeeEEECC------CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-------------ce
Confidence 445577888852 247899999999999999988776667663 578999999998864 23
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEe-----cCcEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRC-----SPRIVA 213 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~-----s~~~La 213 (627)
++.+. .+.+++|||..+.+++.++.+.+.|-+..+ +..+|.
T Consensus 250 ~~T~S----------------------------------aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 250 FLTVS----------------------------------ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred EEEec----------------------------------CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence 44433 247899999999999999999887655444 347888
Q ss_pred EEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccC-------CCCC
Q 046828 214 VGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLS-------PQSL 284 (627)
Q Consensus 214 V~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~-------~q~~ 284 (627)
|++.+.|-.+++.+++.++++.+|... ...+++++ ..|-.++.+..+..|...+ .+.+
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK~-------------ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h 362 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNKS-------------ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH 362 (603)
T ss_pred EEcCcEEEEecccCCChhheecccccc-------------eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc
Confidence 899999999999999999999998643 44566655 5677777766655432211 1222
Q ss_pred CCCCCCCCCCCCCC--------cccc-------hhhhhhhhhhh---cceeecCCcceeEEee-----eeccc-----cC
Q 046828 285 TPPSVSPSTSPSNG--------NLMA-------RYAVESSKQLA---AGLINLGDMGYKTLSR-----YYQDF-----IP 336 (627)
Q Consensus 285 t~~~~s~~~s~s~g--------s~v~-------~~a~~~~k~l~---~gl~~lg~~g~~~~s~-----y~~~~-----~p 336 (627)
+........+ +++ ..+. .|..+..-.+. .++..+.+-++..+.- ++++. .|
T Consensus 363 ~nqI~~~~~~-~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~ 441 (603)
T KOG0318|consen 363 TNQIKGMAAS-ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP 441 (603)
T ss_pred cceEEEEeec-CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence 2111000000 000 0000 00000000000 0111111100000000 00000 00
Q ss_pred CC---CCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEE
Q 046828 337 DG---SSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS--VISQFRAHTSPISALCFDRSGTLLVTASIHGNNIN 411 (627)
Q Consensus 337 ~g---~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~--~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~ 411 (627)
-+ +..+++++.. ..+-+++||.|+||.+.... .......|..+|++|+|||||++||.++..+. +.
T Consensus 442 ~~y~~s~vAv~~~~~--------~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv 512 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGS--------EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VV 512 (603)
T ss_pred cccccceEEEcCCCC--------EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EE
Confidence 00 0011111100 11246799999999998754 44567789999999999999999999999998 68
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
+||+. + . ....-+.+.+.|+|.+|+||||.+.||++|.|-+|+||.++.....
T Consensus 513 ~yd~~-s------~-------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 513 LYDVA-S------R-------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEEcc-c------C-------------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 99986 1 1 1122223445689999999999999999999999999999876544
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-16 Score=159.10 Aligned_cols=262 Identities=15% Similarity=0.151 Sum_probs=183.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..++..|.-+.|.- ++.-++..|+|.-+-+|++..--+-.-.+..|.|.|-=+.+-.. + ..
T Consensus 44 ~gh~geI~~~~F~P------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d--------~-----s~ 104 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD--------G-----SH 104 (338)
T ss_pred CCCcceEEEEEECC------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC--------C-----CE
Confidence 45677788899974 23567889999999999975422223455577777644443322 1 33
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEec---CcEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCS---PRIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s---~~~LaV 214 (627)
|+-++ .+++|+.||.++|+.+..++.+. -|.++.-+ +.+|.+
T Consensus 105 i~S~g----------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~S 150 (338)
T KOG0265|consen 105 ILSCG----------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCS 150 (338)
T ss_pred EEEec----------------------------------CCceEEEEecccceeeehhccccceeeecCccccCCeEEEe
Confidence 32221 35899999999999999998665 45555543 367777
Q ss_pred EeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+.+ +++++||+++-+.+++++ ++ +...|+ ++....
T Consensus 151 gsdD~t~kl~D~R~k~~~~t~~---~k-------------yqltAv-----~f~d~s----------------------- 186 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKKEAIKTFE---NK-------------YQLTAV-----GFKDTS----------------------- 186 (338)
T ss_pred cCCCceEEEEeecccchhhccc---cc-------------eeEEEE-----Eecccc-----------------------
Confidence 765 489999999777665542 22 111222 111100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
-+.+ ++..|+.|++||+.
T Consensus 187 ------------------------------~qv~--------------------------------sggIdn~ikvWd~r 204 (338)
T KOG0265|consen 187 ------------------------------DQVI--------------------------------SGGIDNDIKVWDLR 204 (338)
T ss_pred ------------------------------ccee--------------------------------eccccCceeeeccc
Confidence 0000 34578999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC---
Q 046828 374 SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA--- 450 (627)
Q Consensus 374 s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a--- 450 (627)
....+.++.+|..+|..|..+|+|.+|.+-+-|.+ +++||+.|.... .+..+...|+...
T Consensus 205 ~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~----------------~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 205 KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPS----------------QRCVKIFQGHIHNFEK 267 (338)
T ss_pred cCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCC----------------CceEEEeecchhhhhh
Confidence 99999999999999999999999999999999988 799999875421 1333344554432
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDR 496 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~ 496 (627)
....++|||+++++..++.|..+++|+....+-.-.+-+|...+..
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE 313 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEE
Confidence 1567799999999999999999999999887766667777655443
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=176.02 Aligned_cols=233 Identities=18% Similarity=0.146 Sum_probs=166.4
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEEEEEeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIVAVGLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
..+.|||.++.+.++.|- ++..|++|+|-. +.|||+.. .++++|+..++.+. .+.+|... +
T Consensus 303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~-------------v 368 (775)
T KOG0319|consen 303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA-------------V 368 (775)
T ss_pred ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh-------------e
Confidence 459999999999998886 778999999975 89999974 57999999999876 67787542 2
Q ss_pred ceee--EcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMA--VGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iA--l~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
..++ -.+.|||.++.+..+.+| |+. .+ -+....++. +.| .-+..|....+.
T Consensus 369 lSL~~~~~g~llat~sKD~svilW-r~~-~~--------------~~~~~~~a~------~~g--H~~svgava~~~--- 421 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILW-RLN-NN--------------CSKSLCVAQ------ANG--HTNSVGAVAGSK--- 421 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEE-Eec-CC--------------cchhhhhhh------hcc--cccccceeeecc---
Confidence 2233 234699999999888777 220 00 000000110 000 001111111110
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe---------EEEEeccCCCCeEEEEECCCCCEEEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS---------VISQFRAHTSPISALCFDRSGTLLVTA 403 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~---------~l~~~~aH~~~Is~laFspdG~lLaTa 403 (627)
.+ +....+++.|+++++|++...+ ...+-.+|...|++++.+|+.+++|||
T Consensus 422 ------------------~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 422 ------------------LG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG 481 (775)
T ss_pred ------------------cC--ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec
Confidence 00 0112356899999999997621 122456899999999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 404 SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 404 S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
|.|.+ .+||++. . + .++..| +||+.. |+|+.|++..+.||++|.|+||+||.|..+..
T Consensus 482 SqDkt-aKiW~le-~------~------------~l~~vL-sGH~RG-vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC 539 (775)
T KOG0319|consen 482 SQDKT-AKIWDLE-Q------L------------RLLGVL-SGHTRG-VWCVSFSKNDQLLATCSGDKTVKIWSISTFSC 539 (775)
T ss_pred ccccc-eeeeccc-C------c------------eEEEEe-eCCccc-eEEEEeccccceeEeccCCceEEEEEecccee
Confidence 99988 7999995 2 2 245555 899874 99999999999999999999999999999999
Q ss_pred eeeccccccccc
Q 046828 484 ETVLQIQNSHVD 495 (627)
Q Consensus 484 ~~~~~~h~s~v~ 495 (627)
..++++|.+.|.
T Consensus 540 lkT~eGH~~aVl 551 (775)
T KOG0319|consen 540 LKTFEGHTSAVL 551 (775)
T ss_pred eeeecCccceeE
Confidence 999999987654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=184.12 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=139.4
Q ss_pred eEEEEe-cCCeEEEEEecC--cEEEEEeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEc
Q 046828 192 YVHVLR-FRSTVYMVRCSP--RIVAVGLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYA 267 (627)
Q Consensus 192 ~V~tL~-f~s~V~sV~~s~--~~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~ 267 (627)
...+|- +..+||.++|+| ++|+++.. ..|++|.+.|..++-...+|-.| ++-+.++||-.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P-------------VwdV~F~P~Gy--- 506 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP-------------VWDVQFAPRGY--- 506 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc-------------eeeEEecCCce---
Confidence 344555 445999999998 77888765 58999999999988888887655 33344433311
Q ss_pred CCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCC
Q 046828 268 SNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNS 347 (627)
Q Consensus 268 ~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~ 347 (627)
||
T Consensus 507 --------------------------------------------------------------YF---------------- 508 (707)
T KOG0263|consen 507 --------------------------------------------------------------YF---------------- 508 (707)
T ss_pred --------------------------------------------------------------EE----------------
Confidence 22
Q ss_pred ccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCC
Q 046828 348 SWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSA 427 (627)
Q Consensus 348 ~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~ 427 (627)
++++.|++.++|......++..|.+|.+.|.|++|.|+..++||+|.|.| +|+||+. +|
T Consensus 509 -----------atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~-------~G-- 567 (707)
T KOG0263|consen 509 -----------ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVS-------TG-- 567 (707)
T ss_pred -----------EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcC-------CC--
Confidence 13457888999999999999999999999999999999999999999988 7999997 34
Q ss_pred ccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccc
Q 046828 428 SQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSH 493 (627)
Q Consensus 428 ~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~ 493 (627)
...++++||+ +.|.+|+|||+|+|||+++.||.|+|||+........+.+|...
T Consensus 568 -----------~~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t 621 (707)
T KOG0263|consen 568 -----------NSVRIFTGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT 621 (707)
T ss_pred -----------cEEEEecCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc
Confidence 2345558986 57999999999999999999999999999865555567788543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=162.49 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=154.6
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.++|--|--|.|++. ...+|..|.+.-++|||++..+...+=++.|-|.||.+.+.-. |. .
T Consensus 97 f~hkhivk~~af~~d------s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-------D~------~ 157 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQD------SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-------DK------C 157 (334)
T ss_pred hhhhheeeeEEeccc------chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-------Cc------e
Confidence 556667778999863 3679999999999999999877666667788899988877533 11 2
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~ 216 (627)
|+..+ .+++||+||.+|+..|++|+|+++|.++.+++ ++|.++.
T Consensus 158 iLSSa----------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~ 203 (334)
T KOG0278|consen 158 ILSSA----------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY 203 (334)
T ss_pred EEeec----------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec
Confidence 22111 24789999999999999999999999999987 8999999
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
...|..||+.+++.+.... .|. | +..-+|.|.
T Consensus 204 gssV~Fwdaksf~~lKs~k---~P~---------n--V~SASL~P~---------------------------------- 235 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYK---MPC---------N--VESASLHPK---------------------------------- 235 (334)
T ss_pred CceeEEeccccccceeecc---Ccc---------c--cccccccCC----------------------------------
Confidence 8999999999998775543 230 0 111111110
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~ 376 (627)
.+.+ ..+++|+.+..||..++.
T Consensus 236 ------------------------------------------------------k~~f----VaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 236 ------------------------------------------------------KEFF----VAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ------------------------------------------------------CceE----EecCcceEEEEEeccCCc
Confidence 0001 145789999999999999
Q ss_pred EEEEe-ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCC
Q 046828 377 VISQF-RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMP 417 (627)
Q Consensus 377 ~l~~~-~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p 417 (627)
.+..+ ++|-+||-||.|+|||.+-|++|+||+ ||+|++.|
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~ 298 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTP 298 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecC
Confidence 88886 899999999999999999999999999 89999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-16 Score=155.01 Aligned_cols=227 Identities=12% Similarity=0.176 Sum_probs=160.1
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
++...|..++|+.+++||++.+. -...+-.|.--|-.++|.++. .-| |+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn-------------~qi--vS--------------- 122 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGE-STRRFVGHTKDVLSVAFSTDN-------------RQI--VS--------------- 122 (315)
T ss_pred CCceEEeccccceEEEEEecCCc-EEEEEEecCCceEEEEecCCC-------------cee--ec---------------
Confidence 45778999999999999999864 455666676667777776543 121 32
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec--CCeEEEEEecCc----EEEEEe-CCeEEEEeCCCCcee
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF--RSTVYMVRCSPR----IVAVGL-AAQIYCFDALTLESK 231 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f--~s~V~sV~~s~~----~LaV~~-~~~I~i~D~~t~e~~ 231 (627)
|+ -++++++|+...+......+. +.+|.+|+|+|+ +|+.+. +..|++||+.+.+..
T Consensus 123 -------GS----------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 123 -------GS----------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred -------CC----------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence 11 248999999987655544443 679999999984 566665 557999999999988
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ 311 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~ 311 (627)
+++.+|..- ++.+++ +++
T Consensus 186 ~~~~gh~~~-------------v~t~~v-------SpD------------------------------------------ 203 (315)
T KOG0279|consen 186 TTFIGHSGY-------------VNTVTV-------SPD------------------------------------------ 203 (315)
T ss_pred hcccccccc-------------EEEEEE-------CCC------------------------------------------
Confidence 777665321 222333 221
Q ss_pred hhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEE
Q 046828 312 LAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISAL 391 (627)
Q Consensus 312 l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~l 391 (627)
|+ ..++++.||.+.+||+..++.+..+. |..+|.++
T Consensus 204 --------------------------Gs-----------------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 204 --------------------------GS-----------------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSL 239 (315)
T ss_pred --------------------------CC-----------------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeE
Confidence 10 00145789999999999999876665 67899999
Q ss_pred EECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe---ecC--C--cCcEEEEEEccCCCEE
Q 046828 392 CFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH---RGM--T--SAVIQDICFSHYSQWI 464 (627)
Q Consensus 392 aFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~---rG~--t--~a~I~sIaFSpDg~~L 464 (627)
+|+|+--.|+.|-.. .|+|||+++.. .+.+|+ -|. . ...-.+++||+||+.|
T Consensus 240 ~fspnrywL~~at~~--sIkIwdl~~~~-------------------~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 240 CFSPNRYWLCAATAT--SIKIWDLESKA-------------------VVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred EecCCceeEeeccCC--ceEEEeccchh-------------------hhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 999999888887755 48999997321 111111 121 1 1124567999999999
Q ss_pred EEEeCCCeEEEEEcCC
Q 046828 465 AIVSSRGTCHIFVLTP 480 (627)
Q Consensus 465 as~S~dgTvhIw~i~~ 480 (627)
..+-.|+.|++|.+..
T Consensus 299 f~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVAK 314 (315)
T ss_pred EeeecCCcEEEEEeec
Confidence 9999999999999864
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=175.24 Aligned_cols=231 Identities=14% Similarity=0.153 Sum_probs=175.0
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+.+....+++.+++||+.+...+..-+..|.|.|..+++.-.- ++|. . |
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-------------~~lv--s-------g--------- 267 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-------------DKLV--S-------G--------- 267 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-------------CEEE--E-------E---------
Confidence 5677777888899999998665444366799999998885211 3442 2 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEcCC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLTYP 238 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p 238 (627)
..+.++++||+.+|++++++. +.+.|+.+..-+.+++.| .+.+|++||+.++.+++++.+|.
T Consensus 268 ----------------S~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 268 ----------------STDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred ----------------ecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccc
Confidence 124889999999999999999 556888888888777775 56789999999999999988765
Q ss_pred CCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
.+ +..+.++...|
T Consensus 332 ~~-------------V~~v~~~~~~l------------------------------------------------------ 344 (537)
T KOG0274|consen 332 GP-------------VNCVQLDEPLL------------------------------------------------------ 344 (537)
T ss_pred cc-------------EEEEEecCCEE------------------------------------------------------
Confidence 44 22332211000
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCC
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGT 398 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~ 398 (627)
.++..||+|+|||+.++++++.+.+|+..|.++.|++. .
T Consensus 345 ----------------------------------------vsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~ 383 (537)
T KOG0274|consen 345 ----------------------------------------VSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N 383 (537)
T ss_pred ----------------------------------------EEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c
Confidence 02457899999999999999999999999999999876 8
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 399 lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
.+.+||.|++ |++||+. . .. .+++.+ .|++ +.|.++ ...+++|.+++.|++|++||.
T Consensus 384 ~~~Sgs~D~~-IkvWdl~-~------~~-----------~c~~tl-~~h~-~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 384 RLLSGSLDTT-IKVWDLR-T------KR-----------KCIHTL-QGHT-SLVSSL--LLRDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred eEEeeeeccc-eEeecCC-c------hh-----------hhhhhh-cCCc-cccccc--ccccceeEeccccccEEEeec
Confidence 9999999987 8999986 2 20 134444 4554 345444 446779999999999999999
Q ss_pred CCCCCeeeccc
Q 046828 479 TPFGGETVLQI 489 (627)
Q Consensus 479 ~~~gg~~~~~~ 489 (627)
+..+....+.+
T Consensus 441 ~~~~~~~~~~~ 451 (537)
T KOG0274|consen 441 EEGECLRTLEG 451 (537)
T ss_pred ccCceeeeecc
Confidence 99888777776
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-15 Score=165.33 Aligned_cols=222 Identities=14% Similarity=0.146 Sum_probs=151.0
Q ss_pred CcEEEEecCCCCCceE---EeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCC
Q 046828 90 NGFQVLDVEDATNVSE---LVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDG 166 (627)
Q Consensus 90 ~G~qVWdv~~~~~~~e---lls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g 166 (627)
+|+.|+.++..+.... ++..|.++|..+.+.|.- . .+|+..+
T Consensus 51 gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d-------~-----~~LaSgS----------------------- 95 (493)
T PTZ00421 51 GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD-------P-----QKLFTAS----------------------- 95 (493)
T ss_pred CceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCC-------C-----CEEEEEe-----------------------
Confidence 4455555554443222 567789999999987621 0 3454322
Q ss_pred CCCCCCCCCCcCCcEEEEEECCCC-------ceEEEEec-CCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCceeEEE
Q 046828 167 YDEPQPGNVAMSPTAVRFYSLRSH-------NYVHVLRF-RSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLESKFSV 234 (627)
Q Consensus 167 ~~~~~~~~~~~~~~tV~lwdl~t~-------~~V~tL~f-~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e~~~tl 234 (627)
.+++|++||+.++ +.+.+|.. ...|..|+|++ .+|+++. ++.|+|||+.+++.+.++
T Consensus 96 -----------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l 164 (493)
T PTZ00421 96 -----------EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI 164 (493)
T ss_pred -----------CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 2478999999875 35677774 45999999987 4777765 668999999999988888
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
.+|..+ +.. |++.++...
T Consensus 165 ~~h~~~-------------V~s-------la~spdG~l------------------------------------------ 182 (493)
T PTZ00421 165 KCHSDQ-------------ITS-------LEWNLDGSL------------------------------------------ 182 (493)
T ss_pred cCCCCc-------------eEE-------EEEECCCCE------------------------------------------
Confidence 776543 222 333321100
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC-eEEEEE
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP-ISALCF 393 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~-Is~laF 393 (627)
+ +.++.||.|+|||+.+++.+..+.+|... +..+.|
T Consensus 183 ---------------------------------------L----atgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w 219 (493)
T PTZ00421 183 ---------------------------------------L----CTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW 219 (493)
T ss_pred ---------------------------------------E----EEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEE
Confidence 0 12457899999999999999999999875 456789
Q ss_pred CCCCCEEEEEe----CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-
Q 046828 394 DRSGTLLVTAS----IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS- 468 (627)
Q Consensus 394 spdG~lLaTaS----~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S- 468 (627)
.+++.+|++++ .|++ |+|||+. . .. ..+..........+....|++|+++|++++
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~-VklWDlr-~------~~------------~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQ-IMLWDTR-K------MA------------SPYSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred cCCCCeEEEEecCCCCCCe-EEEEeCC-C------CC------------CceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 99988887764 4676 8999985 2 11 111111222223466778999999999987
Q ss_pred CCCeEEEEEcCCCC
Q 046828 469 SRGTCHIFVLTPFG 482 (627)
Q Consensus 469 ~dgTvhIw~i~~~g 482 (627)
.|++|++|++....
T Consensus 280 gDg~Iriwdl~~~~ 293 (493)
T PTZ00421 280 GEGNIRCFELMNER 293 (493)
T ss_pred CCCeEEEEEeeCCc
Confidence 59999999998643
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-15 Score=163.82 Aligned_cols=216 Identities=19% Similarity=0.236 Sum_probs=154.2
Q ss_pred CcEEEEEECCCCceEEEEecC-CeEEEEEec--CcEEEEEeCC--eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR-STVYMVRCS--PRIVAVGLAA--QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s--~~~LaV~~~~--~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
.+...+|.+-.-.+||.|.-. .+|..+.+| .+.||++... ++-||+.++-.-+....+|...
T Consensus 286 sG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~------------- 352 (893)
T KOG0291|consen 286 SGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR------------- 352 (893)
T ss_pred CCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc-------------
Confidence 366889999999999999965 699999998 5999999876 8999998875444444444321
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+ ..+||.++...
T Consensus 353 ---i----~~l~YSpDgq~------------------------------------------------------------- 364 (893)
T KOG0291|consen 353 ---I----TSLAYSPDGQL------------------------------------------------------------- 364 (893)
T ss_pred ---e----eeEEECCCCcE-------------------------------------------------------------
Confidence 2 24677764211
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIF 413 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vw 413 (627)
+ +.+.+||.|+|||..++-++.+|..|++.|+++.|+.+|..|+++|-||| +|.|
T Consensus 365 --------------------i----aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-VRAw 419 (893)
T KOG0291|consen 365 --------------------I----ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-VRAW 419 (893)
T ss_pred --------------------E----EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe-EEee
Confidence 0 13568999999999999999999999999999999999999999999999 7999
Q ss_pred eCCCCCCCC----------------CCCCCccccCCCCceeEEEEEe--------ecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 414 RIMPSSSKG----------------RSGSASQTYDWTSSHVHLYKLH--------RGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 414 di~p~~~~~----------------~~g~~~~~~~~~~~~~~l~~l~--------rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
|+.....-. ++|.-..++....---.++.++ .||. +.|.+|+|+|++..||++|-
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE-gPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE-GPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC-CcceeeEEccccCeEEeccc
Confidence 987321000 0011001111111112333343 4554 46999999999999999999
Q ss_pred CCeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 470 RGTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 470 dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
|.||++|++-...+.+..-.+.+.+.+..+.|
T Consensus 499 DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP 530 (893)
T ss_pred cceEEEEEeeccCceeeeEeeccceeEEEEcC
Confidence 99999999977655554444555554433333
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-17 Score=165.81 Aligned_cols=273 Identities=15% Similarity=0.185 Sum_probs=182.8
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCC----cCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEG----FRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~----f~~ 134 (627)
+.|+|.|....= ++.....|+.+++|+.+++||++... ....+-.|+|+|+=+.+--+-...-+.|. +..
T Consensus 63 ~gHrdGV~~lak-----hp~~ls~~aSGs~DG~VkiWnlsqR~-~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 63 DGHRDGVSCLAK-----HPNKLSTVASGSCDGEVKIWNLSQRE-CIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cccccccchhhc-----CcchhhhhhccccCceEEEEehhhhh-hhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 668888876332 33334668999999999999999854 35667789999987766432211111121 221
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCC--cEEEEEECCCCceEEEEecCC-eEEEEEecC--
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSP--TAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP-- 209 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~-- 209 (627)
..|.+=...|++.- .| .+-.| .+..|.. ..|.|||.....++.+++... .|.+|.||+
T Consensus 137 ~~~p~~tilg~s~~-~g------------Idh~~----~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 137 DGPPLHTILGKSVY-LG------------IDHHR----KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred cCCcceeeeccccc-cc------------ccccc----ccccccccCceeeecccccCCccceeecCCCceeEEecCCCc
Confidence 11221111111110 00 11111 0112222 349999999999999999765 899999998
Q ss_pred -cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 210 -RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 210 -~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
.+|+++ .+..|.+||+++...++.+....- ++.|+++| =||.
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR--------------TN~IswnP--eafn-------------------- 243 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVILTMR--------------TNTICWNP--EAFN-------------------- 243 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeeeecc--------------ccceecCc--cccc--------------------
Confidence 788888 566899999999887766543111 12233322 1110
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
| ..+.+|-.+
T Consensus 244 ------------------------------------------------------------------F----~~a~ED~nl 253 (433)
T KOG0268|consen 244 ------------------------------------------------------------------F----VAANEDHNL 253 (433)
T ss_pred ------------------------------------------------------------------e----eeccccccc
Confidence 0 135678888
Q ss_pred EEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 368 VVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 368 ~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
..+|+... +++..++.|.+.|..+.|||.|+-+++||-|.+ ||||... ..+. +.+|.-+|
T Consensus 254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~-~~~S----------------RdiYhtkR- 314 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVN-HGHS----------------RDIYHTKR- 314 (433)
T ss_pred eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecC-CCcc----------------hhhhhHhh-
Confidence 88998876 578889999999999999999999999999987 8999985 2211 23443322
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+ ..|.++.||.|++|+.+||+|+.|++|.-+..
T Consensus 315 M--q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 315 M--QHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred h--heeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 2 34999999999999999999999999997654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=146.91 Aligned_cols=242 Identities=14% Similarity=0.173 Sum_probs=162.6
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
....|.-..|+. .+..+++...++.+|+||+.++..++.+-+.+-|. -.+++.-.+ --+
T Consensus 13 ~~~~i~sl~fs~------~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~-~~~~Fth~~--------------~~~ 71 (311)
T KOG1446|consen 13 TNGKINSLDFSD------DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGV-DLACFTHHS--------------NTV 71 (311)
T ss_pred CCCceeEEEecC------CCCEEEEecCCCeEEEEEcCCCceeeEeecccccc-cEEEEecCC--------------ceE
Confidence 467888888863 23556665667799999999988766666665554 444543222 112
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC---cEEEEEe
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP---RIVAVGL 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~---~~LaV~~ 216 (627)
+.+ ++ -.+.+||.-|+.+.++|+.+..+ ..|.++.++| .+|.+++
T Consensus 72 i~s--St-----------------------------k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~ 120 (311)
T KOG1446|consen 72 IHS--ST-----------------------------KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL 120 (311)
T ss_pred EEc--cC-----------------------------CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc
Confidence 221 10 01378999999999999999855 5999999998 4666678
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
|++|++||+++-++...+.-... +..|++|.-|-++.
T Consensus 121 D~tvrLWDlR~~~cqg~l~~~~~---------------pi~AfDp~GLifA~---------------------------- 157 (311)
T KOG1446|consen 121 DKTVRLWDLRVKKCQGLLNLSGR---------------PIAAFDPEGLIFAL---------------------------- 157 (311)
T ss_pred CCeEEeeEecCCCCceEEecCCC---------------cceeECCCCcEEEE----------------------------
Confidence 88999999998776655432211 12334332222211
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR- 375 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~- 375 (627)
+...+.|+|||+++-
T Consensus 158 ----------------------------------------------------------------~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 158 ----------------------------------------------------------------ANGSELIKLYDLRSFD 173 (311)
T ss_pred ----------------------------------------------------------------ecCCCeEEEEEecccC
Confidence 112238899998864
Q ss_pred -eEEEEec---cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 376 -SVISQFR---AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 376 -~~l~~~~---aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
.+-..|. +-....+.|.|||||+.|......+. ++|.|.. +|. .+..+ .++.++.
T Consensus 174 kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf-------~G~------------~~~tf-s~~~~~~ 232 (311)
T KOG1446|consen 174 KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAF-------DGT------------VKSTF-SGYPNAG 232 (311)
T ss_pred CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEcc-------CCc------------EeeeE-eeccCCC
Confidence 2333443 33567999999999999999888886 7899975 442 22222 2222221
Q ss_pred --EEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 452 --IQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 452 --I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
--+-+|+|||+++.++++||+||+|+++...
T Consensus 233 ~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 233 NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred CcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 2567899999999999999999999996543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=167.10 Aligned_cols=240 Identities=15% Similarity=0.210 Sum_probs=174.9
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..+.|-.|--++|- .++|++++..+.+-|.+|+.... +++.++..||.+||+++++++- -
T Consensus 92 ~NKvkc~V~~v~Wt------PeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g-------------~ 151 (464)
T KOG0284|consen 92 SNKVKCPVNVVRWT------PEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNG-------------T 151 (464)
T ss_pred ccccccceeeEEEc------CCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCC-------------C
Confidence 34555555555552 25689999998999999998653 4677888999999999998763 1
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cC-CeEEEEEecC--cEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FR-STVYMVRCSP--RIVA 213 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~-s~V~sV~~s~--~~La 213 (627)
. + +++|. .++|++|+..-. .|+.++ ++ ..|++++|++ ...+
T Consensus 152 w-m-iSgD~--------------------------------gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 152 W-M-ISGDK--------------------------------GGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred E-E-EEcCC--------------------------------CceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeE
Confidence 2 2 33322 267999997544 445554 44 5899999998 3444
Q ss_pred E-EeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 V-GLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V-~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
+ +.++.|+|||....+....|.+|.-- + +-+++-+.+
T Consensus 197 t~SdDg~ikiWdf~~~kee~vL~GHgwd-------------V-------ksvdWHP~k---------------------- 234 (464)
T KOG0284|consen 197 TCSDDGTIKIWDFRMPKEERVLRGHGWD-------------V-------KSVDWHPTK---------------------- 234 (464)
T ss_pred EecCCCeEEEEeccCCchhheeccCCCC-------------c-------ceeccCCcc----------------------
Confidence 4 45668999999988877777665311 1 122222211
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
.+ + ++++.|..|++||.
T Consensus 235 ------------------gL-----------------------------------------i----asgskDnlVKlWDp 251 (464)
T KOG0284|consen 235 ------------------GL-----------------------------------------I----ASGSKDNLVKLWDP 251 (464)
T ss_pred ------------------ce-----------------------------------------e----EEccCCceeEeecC
Confidence 00 0 13456779999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
+++++++++..|...|..+.|+|+|.+|+|+|.|- .++||||... ..++.+ |||+. .|
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~kv~DiR~m-------------------kEl~~~-r~Hkk-dv 309 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIRTM-------------------KELFTY-RGHKK-DV 309 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc-eEEEEehhHh-------------------HHHHHh-hcchh-hh
Confidence 99999999999999999999999999999999996 4899999511 133333 67764 59
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEEcC
Q 046828 453 QDICFSH-YSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 453 ~sIaFSp-Dg~~Las~S~dgTvhIw~i~ 479 (627)
.+++|+| ....|.+++.||.|..|.+.
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred eeeccccccccceeeccCCCceEEEecc
Confidence 9999999 66788899999999999987
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=169.94 Aligned_cols=224 Identities=19% Similarity=0.266 Sum_probs=168.4
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+.++.+.+|..++|||+.++. ....+..|...|+++.+.+ .+. ++ |
T Consensus 262 ~~lvsgS~D~t~rvWd~~sg~-C~~~l~gh~stv~~~~~~~----------------~~~-~s-------g--------- 307 (537)
T KOG0274|consen 262 DKLVSGSTDKTERVWDCSTGE-CTHSLQGHTSSVRCLTIDP----------------FLL-VS-------G--------- 307 (537)
T ss_pred CEEEEEecCCcEEeEecCCCc-EEEEecCCCceEEEEEccC----------------ceE-ee-------c---------
Confidence 566667779999999988755 4566667888888887653 222 22 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEcCC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLTYP 238 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p 238 (627)
+ .|++|++|++.++..++++. +..+|++|.++..+|++|. ++.|.+||+.++++++++.+|.
T Consensus 308 ------s----------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 308 ------S----------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred ------c----------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 1 25899999999999999999 7779999999998777775 6689999999999999999986
Q ss_pred CCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
.. +..+.+ .... +
T Consensus 372 ~~-------------V~sl~~-------~~~~-------~---------------------------------------- 384 (537)
T KOG0274|consen 372 GR-------------VYSLIV-------DSEN-------R---------------------------------------- 384 (537)
T ss_pred ce-------------EEEEEe-------cCcc-------e----------------------------------------
Confidence 53 222322 2100 0
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCC
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSG 397 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG 397 (627)
+ .+++.|+.|++||+.++ +++.++..|.+-+..+.+ .+
T Consensus 385 -----------~----------------------------~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 385 -----------L----------------------------LSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred -----------E----------------------------EeeeeccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence 0 02457899999999999 999999999998866554 68
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 398 TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 398 ~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
++|++++.||+ |++||.. .+. .+..+. +.....|..+++. ...+++++.+|++++|+
T Consensus 424 ~~Lvs~~aD~~-Ik~WD~~-------~~~------------~~~~~~-~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 424 NFLVSSSADGT-IKLWDAE-------EGE------------CLRTLE-GRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ceeEecccccc-EEEeecc-------cCc------------eeeeec-cCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999998 8999986 232 444443 3122458888887 56788999999999999
Q ss_pred cCCCCCee
Q 046828 478 LTPFGGET 485 (627)
Q Consensus 478 i~~~gg~~ 485 (627)
+.......
T Consensus 481 l~~~~~~~ 488 (537)
T KOG0274|consen 481 LRSGTLIR 488 (537)
T ss_pred cccCchhh
Confidence 98754433
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-16 Score=170.25 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=102.7
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+++|.+.+||++...+.+.+|.+|+..|.++.|+|..++|||+|.|+| |+||.|. +. .+
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is-------~f------------SC 539 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSIS-------TF------------SC 539 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEec-------cc------------ee
Confidence 4578999999999999999999999999999999999999999999998 8999996 22 25
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccccc
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVD 495 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~ 495 (627)
+.+| .||+.+ |....|=.+++.|++++.||-++||+++......++..|+..+-
T Consensus 540 lkT~-eGH~~a-Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 540 LKTF-EGHTSA-VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred eeee-cCccce-eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 6666 799865 99999999999999999999999999999999999999987653
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-16 Score=158.16 Aligned_cols=223 Identities=16% Similarity=0.252 Sum_probs=169.4
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.-+...+-|+.++|||++++. +.-.|..|-..|+-|++.+. +|+|.-++ +
T Consensus 164 ~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~r-------------HpYlFs~g-e--------------- 213 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKR-------------HPYLFSAG-E--------------- 213 (460)
T ss_pred eeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeeccc-------------CceEEEec-C---------------
Confidence 334445568889999999855 34445556666677776654 48875432 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
++.|+-|||+..+.|+.+.. =+.||++++.| ++|+++. +..|+|||++|...++++.+
T Consensus 214 ------------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 214 ------------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ------------------CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 26699999999999998874 47999999987 7788775 45799999999999999999
Q ss_pred CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcce
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGL 316 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl 316 (627)
|.++ +..+.+ -+.++ . +
T Consensus 276 H~~~-------------V~~V~~------~~~dp-q---------------------------------------v---- 292 (460)
T KOG0285|consen 276 HTNP-------------VASVMC------QPTDP-Q---------------------------------------V---- 292 (460)
T ss_pred CCCc-------------ceeEEe------ecCCC-c---------------------------------------e----
Confidence 9776 111111 11110 0 0
Q ss_pred eecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC
Q 046828 317 INLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS 396 (627)
Q Consensus 317 ~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd 396 (627)
.+++.|++|++||+..++.+.++..|...|.+++.+|.
T Consensus 293 ------------------------------------------it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 293 ------------------------------------------ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred ------------------------------------------EEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence 03467999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 046828 397 GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 397 G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw 476 (627)
-.++|+||.| +|+-|++ |. |. .+..+ .|++ +.|.+++-..|+ ++++|+++|++..|
T Consensus 331 e~~fASas~d--nik~w~~-p~------g~------------f~~nl-sgh~-~iintl~~nsD~-v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 331 ENLFASASPD--NIKQWKL-PE------GE------------FLQNL-SGHN-AIINTLSVNSDG-VLVSGGDNGSIMFW 386 (460)
T ss_pred hhhhhccCCc--cceeccC-Cc------cc------------hhhcc-cccc-ceeeeeeeccCc-eEEEcCCceEEEEE
Confidence 9999999998 4899998 54 32 34443 5664 679999999997 67799999999999
Q ss_pred EcCC
Q 046828 477 VLTP 480 (627)
Q Consensus 477 ~i~~ 480 (627)
+-..
T Consensus 387 dwks 390 (460)
T KOG0285|consen 387 DWKS 390 (460)
T ss_pred ecCc
Confidence 9864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-16 Score=150.61 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=152.6
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+++||+|+...|.+++++..+. +|.+++.+. ..++++. +..|++||+.|++.++.+.+|... +
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq-------------V 104 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ-------------V 104 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce-------------e
Confidence 4899999999999999999665 999999875 4566654 557999999999999999998643 5
Q ss_pred ceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
+.+.+.. .-++.++-+..++.|...+ .+..|- . .++.++ .++..+ .+++
T Consensus 105 NtV~fNeesSVv~SgsfD~s~r~wDCRS-~s~ePi------------Q----ildea~---D~V~Si------~v~~--- 155 (307)
T KOG0316|consen 105 NTVRFNEESSVVASGSFDSSVRLWDCRS-RSFEPI------------Q----ILDEAK---DGVSSI------DVAE--- 155 (307)
T ss_pred eEEEecCcceEEEeccccceeEEEEccc-CCCCcc------------c----hhhhhc---CceeEE------Eecc---
Confidence 5666643 5677777776666654321 111110 0 000000 000000 0000
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINI 412 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~V 412 (627)
.....++.||+++.||+..++.....-+ .||++++|++||..+..++-+++ +|+
T Consensus 156 -----------------------heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~st-lrL 209 (307)
T KOG0316|consen 156 -----------------------HEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDST-LRL 209 (307)
T ss_pred -----------------------cEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccce-eee
Confidence 0012467899999999999987666655 48999999999999999999998 799
Q ss_pred EeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc-EEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV-IQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 413 wdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~-I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
-|-. +| ++.+-..||.+.. =.+.+|+.....++++|.||.|.+|++.....
T Consensus 210 lDk~-------tG-------------klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 210 LDKE-------TG-------------KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred cccc-------hh-------------HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 8854 45 3333446776543 45778999899999999999999999976443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=158.57 Aligned_cols=234 Identities=19% Similarity=0.246 Sum_probs=165.2
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.-++.|.-+.|-+. .++|+.|.+.| +||||..+ ..+...+-.|+.||.++++-|.- .+
T Consensus 66 rFk~~v~s~~fR~D-------G~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d-------------~t 124 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSD-------GRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQD-------------NT 124 (487)
T ss_pred hhccceeEEEeecC-------CeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccC-------------Ce
Confidence 34778888888642 46777776665 99999443 55667778899999999987642 33
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~LaV 214 (627)
+++ .++ .+.++++||+.+...+.+|. +...|++.+|++ .++++
T Consensus 125 ~l~-s~s--------------------------------Dd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 125 MLV-SGS--------------------------------DDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred EEE-ecC--------------------------------CCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe
Confidence 443 321 13789999999998765776 445999999987 47777
Q ss_pred Ee-CCeEEEEeCCCC-ceeEEEEcCCCCCCCCCCCcCcccccceeeEcC-ceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTL-ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP-RWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~-e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~-r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
|. |++|++||+++. +.+.++ .|..|. -..+++.+ ..+|.+
T Consensus 172 GsYDg~vrl~DtR~~~~~v~el-nhg~pV------------e~vl~lpsgs~iasA------------------------ 214 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLTSRVVEL-NHGCPV------------ESVLALPSGSLIASA------------------------ 214 (487)
T ss_pred cCCCceEEEEEeccCCceeEEe-cCCCce------------eeEEEcCCCCEEEEc------------------------
Confidence 74 779999999987 444444 333331 11223321 222221
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
....|+|||
T Consensus 215 -----------------------------------------------------------------------gGn~vkVWD 223 (487)
T KOG0310|consen 215 -----------------------------------------------------------------------GGNSVKVWD 223 (487)
T ss_pred -----------------------------------------------------------------------CCCeEEEEE
Confidence 124699999
Q ss_pred CCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 372 IVSRSV-ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 372 ~~s~~~-l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
+.++.+ +..+..|...|+||+|..+++.|.+|+-||+ ++|||+. .. .-++.+ + -++
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t-~~------------------Kvv~s~--~-~~~ 280 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTT-NY------------------KVVHSW--K-YPG 280 (487)
T ss_pred ecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEcc-ce------------------EEEEee--e-ccc
Confidence 996654 5555569999999999999999999999999 7999974 11 122222 1 135
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
.|.+|+.|||++.+++|-.+|.+-+-+.
T Consensus 281 pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 281 PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ceeeEEecCCCceEEEecccceeeeehh
Confidence 6999999999999999999999877643
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=170.99 Aligned_cols=262 Identities=13% Similarity=0.132 Sum_probs=178.3
Q ss_pred CeEEEEeccC-cEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLLGYSN-GFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~Gy~~-G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
+-.++.+.-+ .+|+||-.-.. ..+-+-.||||||-+.|-|.- ||. |. +|
T Consensus 21 rPwILtslHsG~IQlWDYRM~t-li~rFdeHdGpVRgv~FH~~q-------------plF--VS------GG-------- 70 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGT-LIDRFDEHDGPVRGVDFHPTQ-------------PLF--VS------GG-------- 70 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhh-HHhhhhccCCccceeeecCCC-------------CeE--Ee------cC--------
Confidence 4455566655 59999988644 456667899999999987653 774 43 22
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~ 235 (627)
.+-+|++|+.++.+++.+|..+ .-|+.+.|.+ -.|+++.++ +|+||+..+.+++-+++
T Consensus 71 ------------------DDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 71 ------------------DDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred ------------------CccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 1368999999999999999855 5999999987 567777766 69999999999999999
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+|..- +-+-.+.| ..++.++-+.+++.|....+.--+
T Consensus 133 GHnHY-------------VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~---------------------------- 171 (1202)
T KOG0292|consen 133 GHNHY-------------VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN---------------------------- 171 (1202)
T ss_pred cCceE-------------EEeeccCCccceEEEecccceEEEEeecchhccC----------------------------
Confidence 98531 11112333 577777766666655432100000
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
.++| +....-+.... ..+.-+..|-. .-..+.+|...|+..+|
T Consensus 172 ---------------------~~pg-----~~e~~~~~~~~-~~dLfg~~DaV----------VK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 172 ---------------------KAPG-----SLEDQMRGQQG-NSDLFGQTDAV----------VKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ---------------------CCCC-----Cchhhhhcccc-chhhcCCcCee----------eeeeecccccccceEEe
Confidence 0000 00000000000 00000111222 23467899999999999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeE
Q 046828 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTv 473 (627)
.|.--+|++|++|.. |++|+.. .. ..|.+-.+ |||.+ .|.++-|.|.-..|.+.|.|++|
T Consensus 215 hpTlpliVSG~DDRq-VKlWrmn-et----------------KaWEvDtc-rgH~n-nVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQ-VKLWRMN-ET----------------KAWEVDTC-RGHYN-NVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred cCCcceEEecCCcce-eeEEEec-cc----------------cceeehhh-hcccC-CcceEEecCccceeEecCCCccE
Confidence 999999999999976 8999974 21 11344333 89876 59999999999999999999999
Q ss_pred EEEEcCCCCCeeecc
Q 046828 474 HIFVLTPFGGETVLQ 488 (627)
Q Consensus 474 hIw~i~~~gg~~~~~ 488 (627)
+|||++...+..+++
T Consensus 275 rVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 275 RVWDMTKRTSVQTFR 289 (1202)
T ss_pred EEEecccccceeeee
Confidence 999999988877664
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-16 Score=162.16 Aligned_cols=224 Identities=16% Similarity=0.238 Sum_probs=167.4
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.++..++++..++|+++... +++.|+.|.+-|..+.+.-.. ..||.
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~~r-~~~TLsGHtdkVt~ak~~~~~---------------~~vVs---------------- 278 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDSLR-LRHTLSGHTDKVTAAKFKLSH---------------SRVVS---------------- 278 (459)
T ss_pred CceEEeecCCCceeeeeccchh-hhhhhcccccceeeehhhccc---------------cceee----------------
Confidence 4789999999999999999865 567788899999888875322 12343
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEcCC
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLTYP 238 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p 238 (627)
|. .+.+|++||+....+.+++-+.+.+.+|.++...++++ .+++|+.||+++..+.+++..+.
T Consensus 279 ------gs----------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg 342 (459)
T KOG0288|consen 279 ------GS----------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG 342 (459)
T ss_pred ------cc----------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc
Confidence 11 35889999999999999999999999999998777777 57789999999988877764332
Q ss_pred CCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
. +..+.++. + +
T Consensus 343 ~--------------vtSl~ls~-------~--------g---------------------------------------- 353 (459)
T KOG0288|consen 343 R--------------VTSLDLSM-------D--------G---------------------------------------- 353 (459)
T ss_pred c--------------eeeEeecc-------C--------C----------------------------------------
Confidence 1 11222211 0 0
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC----CCCeEEEEEC
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH----TSPISALCFD 394 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH----~~~Is~laFs 394 (627)
.+-+ +...|.++.+.|+.+.+....|.|. .+..+.+.||
T Consensus 354 -----~~lL--------------------------------sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 354 -----LELL--------------------------------SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred -----eEEe--------------------------------eecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 0000 1235677888898888877777764 2458999999
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEE
Q 046828 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCH 474 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvh 474 (627)
|+|.++|+||.||. |+||++. +|. ....+..-..++.|.+++|+|-|+.|++++.++.+.
T Consensus 397 pd~~YvaAGS~dgs-v~iW~v~-------tgK------------lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 397 PDGSYVAAGSADGS-VYIWSVF-------TGK------------LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred CCCceeeeccCCCc-EEEEEcc-------Cce------------EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceE
Confidence 99999999999998 7999986 331 333333223334599999999999999999999999
Q ss_pred EEE
Q 046828 475 IFV 477 (627)
Q Consensus 475 Iw~ 477 (627)
+|.
T Consensus 457 lW~ 459 (459)
T KOG0288|consen 457 LWT 459 (459)
T ss_pred ecC
Confidence 993
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=161.30 Aligned_cols=255 Identities=15% Similarity=0.255 Sum_probs=175.1
Q ss_pred CCCCCCcEEEEEeeccCCC-----CCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCce-EEEE-EeeCCCCCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELS-----PSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV-TFLQ-MQPLPAKSDGQE 130 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~-----~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V-~~v~-~lp~p~~~~~~D 130 (627)
+.+.+..|+-..|.++++. +.....++..|...-+.+||++.++ .+-++...|.- +.++ |...
T Consensus 243 DGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak--~~k~~~~~g~e~~~~e~FeVS-------- 312 (514)
T KOG2055|consen 243 DGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK--VTKLKPPYGVEEKSMERFEVS-------- 312 (514)
T ss_pred cCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc--cccccCCCCcccchhheeEec--------
Confidence 4445556777777665554 2222478888889999999999876 44555444432 2222 1111
Q ss_pred CcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC-
Q 046828 131 GFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP- 209 (627)
Q Consensus 131 ~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~- 209 (627)
+..+.||+.+ . .+-|.|-..+|++.+++++....|.++.|+.
T Consensus 313 ---hd~~fia~~G--------------------~--------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 313 ---HDSNFIAIAG--------------------N--------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSD 355 (514)
T ss_pred ---CCCCeEEEcc--------------------c--------------CceEEeehhhhhhhhheeeeccEEeeEEEecC
Confidence 2236777643 0 1458999999999999999999999999975
Q ss_pred --cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 210 --RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 210 --~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
++++++..++|++||+++..+++++..-.. .+|.. -++++.++|||.+++
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-------v~gts---~~~S~ng~ylA~GS~------------------ 407 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-------VHGTS---LCISLNGSYLATGSD------------------ 407 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCc-------cceee---eeecCCCceEEeccC------------------
Confidence 677888889999999999988888764221 12211 123455677777653
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
.|.|
T Consensus 408 ----------------------------------------------------------------------------~GiV 411 (514)
T KOG2055|consen 408 ----------------------------------------------------------------------------SGIV 411 (514)
T ss_pred ----------------------------------------------------------------------------cceE
Confidence 3455
Q ss_pred EEEECC------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC-EEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 368 VVKDIV------SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 368 ~IwD~~------s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.|||.. +.+++..+..-+..|+.|+|+||+++||.||..-. .+|+-.+ |++.. .+ +|+..
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS~TV------Fs--NfP~~---- 478 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PSCTV------FS--NFPTS---- 478 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cceee------ec--cCCCC----
Confidence 555543 24677788888889999999999999999997432 2566655 44311 00 12211
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+.+-..|.|++|||.|-+||+|..+|.+|||.|..|
T Consensus 479 -----n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 479 -----NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred -----CCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 222235999999999999999999999999999764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-16 Score=167.23 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=163.6
Q ss_pred cEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
+.|.||+-.|+.+|++++-.. ||++.+|=. +.|++|.++ +|+||+..|++++++++.|+.- ..
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy-------------IR 101 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY-------------IR 101 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc-------------ee
Confidence 679999999999999999654 999888753 788888776 7999999999999999998753 44
Q ss_pred eeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 256 PMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 256 ~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
.+++.| -++-.++++.++..|.- +......+ ..-||..|. +.=-|+
T Consensus 102 ~iavHPt~P~vLtsSDDm~iKlW~w----------------------------e~~wa~~q--tfeGH~HyV-Mqv~fn- 149 (794)
T KOG0276|consen 102 SIAVHPTLPYVLTSSDDMTIKLWDW----------------------------ENEWACEQ--TFEGHEHYV-MQVAFN- 149 (794)
T ss_pred eeeecCCCCeEEecCCccEEEEeec----------------------------cCceeeee--EEcCcceEE-EEEEec-
Confidence 566666 25555666666554321 10000000 112443331 000111
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCC--CEEEEEeCCCCEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSG--TLLVTASIHGNNIN 411 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG--~lLaTaS~dGt~I~ 411 (627)
|.. +.+| ++++-|++|+||.+.+..+..+|++|...|+|+.|=+-| -+|+||++|-+ |+
T Consensus 150 --PkD------------~ntF----aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iK 210 (794)
T KOG0276|consen 150 --PKD------------PNTF----ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IK 210 (794)
T ss_pred --CCC------------ccce----eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EE
Confidence 111 1223 367889999999999999999999999999999999877 48999999976 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
|||.. + . .++..| .||++ .|..+.|.|.=-++++||.|||++||.-.+|....++.
T Consensus 211 vWDyQ-t------k------------~CV~TL-eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 211 VWDYQ-T------K------------SCVQTL-EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred Eeecc-h------H------------HHHHHh-hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence 99986 2 1 145555 78876 59999999999999999999999999999886655443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-16 Score=157.69 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=141.5
Q ss_pred CCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 178 SPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
.+++++|||+.||+...+|. +.+.|..|++|+ -+|.++ .+.+|+|||+...+.++..-+|-..
T Consensus 171 ~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~------------- 237 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG------------- 237 (460)
T ss_pred CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce-------------
Confidence 46999999999999999998 667999999997 355555 5668999999998877666555221
Q ss_pred cceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 254 YGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 254 ~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
+..+++.| +.|+
T Consensus 238 V~~L~lhPTldvl~------------------------------------------------------------------ 251 (460)
T KOG0285|consen 238 VYCLDLHPTLDVLV------------------------------------------------------------------ 251 (460)
T ss_pred eEEEeccccceeEE------------------------------------------------------------------
Confidence 22233322 1111
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNIN 411 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~ 411 (627)
.++.|.+++|||+.+...+..+.+|..+|..+.|.|-.-.++|+|.|++ |+
T Consensus 252 ----------------------------t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vr 302 (460)
T KOG0285|consen 252 ----------------------------TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VR 302 (460)
T ss_pred ----------------------------ecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EE
Confidence 2457889999999999999999999999999999998888999999998 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
+||+. .|. -...+ ..| .-.|.+++..|+...+|++|.| .|+-|++....-..++..|+
T Consensus 303 lWDl~-------agk------------t~~tl-t~h-kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~ 360 (460)
T KOG0285|consen 303 LWDLR-------AGK------------TMITL-THH-KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN 360 (460)
T ss_pred Eeeec-------cCc------------eeEee-ecc-cceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc
Confidence 99996 332 23333 222 2349999999999999888777 56889997765556677776
Q ss_pred cc
Q 046828 492 SH 493 (627)
Q Consensus 492 s~ 493 (627)
..
T Consensus 361 ~i 362 (460)
T KOG0285|consen 361 AI 362 (460)
T ss_pred ce
Confidence 54
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-15 Score=147.93 Aligned_cols=226 Identities=16% Similarity=0.250 Sum_probs=170.5
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+...+|..|.|+.|++||++.+. ..-+|.+.-+|+..++ |.. |.+.+|++ |
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~----~~rk~k~h~~~vNs~~-p~r----------rg~~lv~S-------g------- 151 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGK----RIRKHKGHTSFVNSLD-PSR----------RGPQLVCS-------G------- 151 (338)
T ss_pred CCCEEEEecCCceEEEEecccce----eeehhccccceeeecC-ccc----------cCCeEEEe-------c-------
Confidence 45889999999999999999855 4456777778888776 421 12223333 1
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEeCCeEEEEeCCCCceeEEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGLAAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~~~~I~i~D~~t~e~~~tl~ 235 (627)
..+++++|||+|+.+.+++++-+..+.+|.|+. +++..+.++.|++||++..+.++++.
T Consensus 152 ------------------sdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls 213 (338)
T KOG0265|consen 152 ------------------SDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS 213 (338)
T ss_pred ------------------CCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEee
Confidence 135899999999999999998888999999986 66666678899999999999999999
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|..+ +.-+++++ |+..
T Consensus 214 Gh~Dt-------------It~lsls~----~gs~---------------------------------------------- 230 (338)
T KOG0265|consen 214 GHADT-------------ITGLSLSR----YGSF---------------------------------------------- 230 (338)
T ss_pred cccCc-------------eeeEEecc----CCCc----------------------------------------------
Confidence 98765 11233311 0000
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC----CeEEEEeccCCC----C
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS----RSVISQFRAHTS----P 387 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s----~~~l~~~~aH~~----~ 387 (627)
+. +-..|.+|++||++- .+++..|.+|.. .
T Consensus 231 --------------------------------------ll----snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 231 --------------------------------------LL----SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred --------------------------------------cc----cccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 00 113578999999874 366889998754 3
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~ 467 (627)
....+|+|+++.+..+|.|.. +.|||.. . . ..+|+| .||.. .|..++|.|...+|.++
T Consensus 269 lL~cswsp~~~~i~ags~dr~-vyvwd~~-~-------r-----------~~lykl-pGh~g-svn~~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRF-VYVWDTT-S-------R-----------RILYKL-PGHYG-SVNEVDFHPTEPIILSC 326 (338)
T ss_pred cceeeccCCCCccccccccce-EEEeecc-c-------c-----------cEEEEc-CCcce-eEEEeeecCCCcEEEEe
Confidence 456789999999999999976 7999974 1 1 267877 78864 59999999999999999
Q ss_pred eCCCeEEEEEc
Q 046828 468 SSRGTCHIFVL 478 (627)
Q Consensus 468 S~dgTvhIw~i 478 (627)
++|.||.+=.|
T Consensus 327 ~sdk~i~lgei 337 (338)
T KOG0265|consen 327 SSDKTIYLGEI 337 (338)
T ss_pred ccCceeEeecc
Confidence 99999987443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-15 Score=160.50 Aligned_cols=240 Identities=19% Similarity=0.200 Sum_probs=177.2
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
.+.|.-+.|... ...|++|+.+| ++|||++....++++...|.+.|.++++.. .++
T Consensus 217 ~~~vtSv~ws~~-------G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----------------~~l 273 (484)
T KOG0305|consen 217 EELVTSVKWSPD-------GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----------------SVL 273 (484)
T ss_pred CCceEEEEECCC-------CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----------------ceE
Confidence 677777777632 56788888776 999999998887777777888888888762 122
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEE-Ee-cCCeEEEEEecC--cEEEEEe
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHV-LR-FRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~t-L~-f~s~V~sV~~s~--~~LaV~~ 216 (627)
.++ . -++.|.++|++..+.+.. +. +...|+.+++++ +.+|+|.
T Consensus 274 ssG------s---------------------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg 320 (484)
T KOG0305|consen 274 SSG------S---------------------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG 320 (484)
T ss_pred EEe------c---------------------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC
Confidence 221 1 126699999999887665 66 556999999997 7899985
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
|..++|||..+.+.++++.+|... + +-+|+++-..-
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aA-------------V-------KA~awcP~q~~----------------------- 357 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAA-------------V-------KALAWCPWQSG----------------------- 357 (484)
T ss_pred CccceEeccCCCccccEEEecccee-------------e-------eEeeeCCCccC-----------------------
Confidence 668999999998999999888653 3 33455542110
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
| +++. .+..|+.|++||..++
T Consensus 358 --------------------l-------------------------------------LAsG--GGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 358 --------------------L-------------------------------------LATG--GGSADRCIKFWNTNTG 378 (484)
T ss_pred --------------------c-------------------------------------eEEc--CCCcccEEEEEEcCCC
Confidence 0 0000 2457899999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHG-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
+.+..+.. .+-|..|.|++..+-|+++-... ..|.||+. |.. .++.. +.||+. +|..
T Consensus 379 ~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~-ps~------------------~~~~~-l~gH~~-RVl~ 436 (484)
T KOG0305|consen 379 ARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKY-PSM------------------KLVAE-LLGHTS-RVLY 436 (484)
T ss_pred cEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEec-ccc------------------ceeee-ecCCcc-eeEE
Confidence 88877764 46799999999998777764432 23899997 331 13333 368764 7999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+++||||+.|++++.|.|+++|++-+.
T Consensus 437 la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999999765
|
|
| >PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-17 Score=165.72 Aligned_cols=89 Identities=54% Similarity=0.814 Sum_probs=81.2
Q ss_pred CCCeeeeeeeeeecCC-CCccccccccccccCC-ccCCCccceeeecccccccCCCccccc-ccCcceEEEEcCCCcEEE
Q 046828 525 PLPVTLSVVSRIKNNN-SGWLNTVSSTASSTAG-KTSIPSGALAAVFHSSLHQDLQPLDSK-VNDLEHVLVYTPSGHVVQ 601 (627)
Q Consensus 525 p~~~~l~~~~~i~~~~-~~w~~~~~~~~~~~~~-~~~~~~~~v~~~f~~~~~~~~~~~~~~-~~~~~~l~v~~~~G~l~~ 601 (627)
|+|++|++|+||||++ +||+|++++++++++| +.+.++|++|+.||++......+.... .+.+++||||+|+|+|+|
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 6889999999999999 8999999999999998 889999999999999977766666654 799999999999999999
Q ss_pred EEeeccCCCCcc
Q 046828 602 YKLLSSIGGESS 613 (627)
Q Consensus 602 y~l~p~~~~~~~ 613 (627)
|.|+|+.++|..
T Consensus 81 y~L~p~~~~~~~ 92 (251)
T PF12490_consen 81 YELRPSPGSDPT 92 (251)
T ss_pred EEEeeccccCcc
Confidence 999999998655
|
The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-16 Score=164.94 Aligned_cols=260 Identities=13% Similarity=0.102 Sum_probs=185.2
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+|.+.|..+.|= +.....+|..|.|+.++||++-+.+.+.+.+..|..+|+-+.+..... .+|
T Consensus 212 gH~kgvsai~~f-----p~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~------------~fL 274 (503)
T KOG0282|consen 212 GHTKGVSAIQWF-----PKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT------------SFL 274 (503)
T ss_pred CCccccchhhhc-----cceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC------------eee
Confidence 344445544442 223477888999999999999997778888888999998888765432 222
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEE-
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVG- 215 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~- 215 (627)
.+ ..++.|++||++||+++..+.....+++|.+.+ +++++|
T Consensus 275 -S~----------------------------------sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~ 319 (503)
T KOG0282|consen 275 -SA----------------------------------SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG 319 (503)
T ss_pred -ee----------------------------------ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec
Confidence 11 135889999999999999999999999999987 455555
Q ss_pred eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 216 LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 216 ~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++++|..||+++++.++.+..|-.+ +..+.+ -+..
T Consensus 320 sd~ki~~wDiRs~kvvqeYd~hLg~-------------i~~i~F-------~~~g------------------------- 354 (503)
T KOG0282|consen 320 SDKKIRQWDIRSGKVVQEYDRHLGA-------------ILDITF-------VDEG------------------------- 354 (503)
T ss_pred CCCcEEEEeccchHHHHHHHhhhhh-------------eeeeEE-------ccCC-------------------------
Confidence 5678999999999976655433111 111111 1100
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
+ +| .++..|+.|+||+....
T Consensus 355 ---------------------------------~-----------------------rF----issSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 355 ---------------------------------R-----------------------RF----ISSSDDKSVRIWENRIP 374 (503)
T ss_pred ---------------------------------c-----------------------eE----eeeccCccEEEEEcCCC
Confidence 0 01 13457889999999887
Q ss_pred eEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc-EE
Q 046828 376 SVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV-IQ 453 (627)
Q Consensus 376 ~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~-I~ 453 (627)
-.+..+. .+.....+|+..|+|..++.=|.+.. |-||.+.+-.. ....+.++||..+. =.
T Consensus 375 v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r-----------------~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 375 VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFR-----------------LNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccc-----------------cCHhhhhcceeccCcee
Confidence 6555443 33456778999999999999999876 79998763221 13344456776544 56
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
.+.|||||++|++|+.||.+.+|+-++......+.+|+.-.
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~c 477 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPC 477 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcce
Confidence 78999999999999999999999999877766777775433
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.4e-15 Score=162.05 Aligned_cols=223 Identities=19% Similarity=0.272 Sum_probs=174.1
Q ss_pred CeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.+++|+++| +||||+..... .|....|+|.+-.++..|.-. - .++ +
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~~l-~Eti~AHdgaIWsi~~~pD~~------------g---~vT------~--------- 472 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASASL-VETIRAHDGAIWSISLSPDNK------------G---FVT------G--------- 472 (888)
T ss_pred CceEEEeccCCceEEEEeehhhh-hhhhhccccceeeeeecCCCC------------c---eEE------e---------
Confidence 56778888887 99999998664 566668999988888776531 1 122 1
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCC-----Cc--------eEEEEecCCeEEEEEecC--cEEEEEe-CCeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRS-----HN--------YVHVLRFRSTVYMVRCSP--RIVAVGL-AAQIYCF 223 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t-----~~--------~V~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~i~ 223 (627)
..+++|+|||.+- |. .-.+|++...|.+|++|| ++|||++ +.+|+||
T Consensus 473 -----------------saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 473 -----------------SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred -----------------cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 1358999999752 11 125788899999999997 8999995 6799999
Q ss_pred eCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCccc
Q 046828 224 DALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLM 301 (627)
Q Consensus 224 D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v 301 (627)
-+.|++...++-+|..| +..+.++| ..|+
T Consensus 536 flDtlKFflsLYGHkLP-------------V~smDIS~DSkliv------------------------------------ 566 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLP-------------VLSMDISPDSKLIV------------------------------------ 566 (888)
T ss_pred Eecceeeeeeecccccc-------------eeEEeccCCcCeEE------------------------------------
Confidence 99999988888888776 33333322 1111
Q ss_pred chhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEe
Q 046828 302 ARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQF 381 (627)
Q Consensus 302 ~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~ 381 (627)
.++.|..|+||=+.=|.+-..|
T Consensus 567 ----------------------------------------------------------TgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 567 ----------------------------------------------------------TGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred ----------------------------------------------------------eccCCCceEEeccccchhhhhh
Confidence 2356788999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC
Q 046828 382 RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS 461 (627)
Q Consensus 382 ~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg 461 (627)
-||...|.++.|-|...++.|++.||. |+-||-..- .++..| +||+. .|++++-+|+|
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kF-------------------e~iq~L-~~H~~-ev~cLav~~~G 646 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKF-------------------EEIQKL-DGHHS-EVWCLAVSPNG 646 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcce-EEeechhhh-------------------hhheee-ccchh-eeeeeEEcCCC
Confidence 999999999999999999999999997 899986411 255556 67754 69999999999
Q ss_pred CEEEEEeCCCeEEEEEcCC
Q 046828 462 QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 462 ~~Las~S~dgTvhIw~i~~ 480 (627)
.+++++|.|.+|++|....
T Consensus 647 ~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CeEEeccCCceeEeeeccC
Confidence 9999999999999998765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=156.18 Aligned_cols=222 Identities=11% Similarity=0.172 Sum_probs=146.4
Q ss_pred ccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCC
Q 046828 88 YSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGY 167 (627)
Q Consensus 88 y~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~ 167 (627)
..+-+++|+..... ....+..|.++|..+++.|.. ..+||..+
T Consensus 52 ~~gvI~L~~~~r~~-~v~~L~gH~~~V~~lafsP~~------------~~lLASgS------------------------ 94 (568)
T PTZ00420 52 LIGAIRLENQMRKP-PVIKLKGHTSSILDLQFNPCF------------SEILASGS------------------------ 94 (568)
T ss_pred ceeEEEeeecCCCc-eEEEEcCCCCCEEEEEEcCCC------------CCEEEEEe------------------------
Confidence 34558889877643 344566788999999987642 13554321
Q ss_pred CCCCCCCCCcCCcEEEEEECCCCc--------eEEEEe-cCCeEEEEEecC---cEEEEE-eCCeEEEEeCCCCceeEEE
Q 046828 168 DEPQPGNVAMSPTAVRFYSLRSHN--------YVHVLR-FRSTVYMVRCSP---RIVAVG-LAAQIYCFDALTLESKFSV 234 (627)
Q Consensus 168 ~~~~~~~~~~~~~tV~lwdl~t~~--------~V~tL~-f~s~V~sV~~s~---~~LaV~-~~~~I~i~D~~t~e~~~tl 234 (627)
.+++|+|||+.++. .+.++. +...|.+|+|++ .+|+++ .++.|+|||+.+++..+.+
T Consensus 95 ----------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i 164 (568)
T PTZ00420 95 ----------EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI 164 (568)
T ss_pred ----------CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 24789999998652 344565 456899999998 355665 5678999999999877666
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
. ++.. +. .+++..+...
T Consensus 165 ~-~~~~-------------V~-------SlswspdG~l------------------------------------------ 181 (568)
T PTZ00420 165 N-MPKK-------------LS-------SLKWNIKGNL------------------------------------------ 181 (568)
T ss_pred e-cCCc-------------EE-------EEEECCCCCE------------------------------------------
Confidence 4 2211 11 2333321100
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEE----
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISA---- 390 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~---- 390 (627)
+ +.+..|+.|+|||+.+++.+..+.+|...+.+
T Consensus 182 ---------------------------------------L----at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 182 ---------------------------------------L----SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred ---------------------------------------E----EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 0 02346889999999999999999999876543
Q ss_pred -EEECCCCCEEEEEeCCC---CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 391 -LCFDRSGTLLVTASIHG---NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 391 -laFspdG~lLaTaS~dG---t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
..|++++.+|+|++.++ ..|+|||+... +. ......+.. ....+...-+.+++.++++
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~------~~----------pl~~~~ld~--~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNT------TS----------ALVTMSIDN--ASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCC------CC----------ceEEEEecC--CccceEEeeeCCCCCEEEE
Confidence 34678999999988765 24899998611 11 012222211 1222444455667999999
Q ss_pred EeCCCeEEEEEcCC
Q 046828 467 VSSRGTCHIFVLTP 480 (627)
Q Consensus 467 ~S~dgTvhIw~i~~ 480 (627)
|+.|++|++|++..
T Consensus 281 GkGD~tIr~~e~~~ 294 (568)
T PTZ00420 281 GKGDGNCRYYQHSL 294 (568)
T ss_pred EECCCeEEEEEccC
Confidence 99999999999964
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-15 Score=156.10 Aligned_cols=246 Identities=18% Similarity=0.211 Sum_probs=173.7
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
...++++.|...+|..- . +.=+++...-++|+|+..... +...+++-+..|..+.+ +...
T Consensus 21 ~~~ke~~~vssl~fsp~-----~-P~d~aVt~S~rvqly~~~~~~-~~k~~srFk~~v~s~~f-------------R~DG 80 (487)
T KOG0310|consen 21 PVHKEHNSVSSLCFSPK-----H-PYDFAVTSSVRVQLYSSVTRS-VRKTFSRFKDVVYSVDF-------------RSDG 80 (487)
T ss_pred ccccccCcceeEecCCC-----C-CCceEEecccEEEEEecchhh-hhhhHHhhccceeEEEe-------------ecCC
Confidence 34556677777777532 2 334556667899999988633 55666666666665554 3333
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIV 212 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~L 212 (627)
.|||. ||++ +.|++||+++...+..++ +..+|..+.|++ .++
T Consensus 81 ~Llaa--GD~s--------------------------------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 81 RLLAA--GDES--------------------------------GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred eEEEc--cCCc--------------------------------CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEE
Confidence 67653 4543 569999988877788887 556999999997 567
Q ss_pred EEEeCCe-EEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 213 AVGLAAQ-IYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 213 aV~~~~~-I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
+.|.|++ +.+||+.+......+.+|..- + |..++.+.
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDY-------------V-------R~g~~~~~---------------------- 164 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELSGHTDY-------------V-------RCGDISPA---------------------- 164 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEecCCcce-------------e-------EeeccccC----------------------
Confidence 7777775 789999998875577776542 1 22222221
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
++.+ + .++++||.|++||
T Consensus 165 -----~~hi-----------------------------------------------------v----vtGsYDg~vrl~D 182 (487)
T KOG0310|consen 165 -----NDHI-----------------------------------------------------V----VTGSYDGKVRLWD 182 (487)
T ss_pred -----CCeE-----------------------------------------------------E----EecCCCceEEEEE
Confidence 0000 0 1467999999999
Q ss_pred CCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 372 IVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 372 ~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
+.+. ..+..| .|..||..+.|=|+|.++|||+ |..|+|||+. .|. +.+..+.. |. -
T Consensus 183 tR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~-------~G~-----------qll~~~~~-H~-K 239 (487)
T KOG0310|consen 183 TRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG--GNSVKVWDLT-------TGG-----------QLLTSMFN-HN-K 239 (487)
T ss_pred eccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEec-------CCc-----------eehhhhhc-cc-c
Confidence 9988 445444 4899999999999999999998 5579999985 232 24443322 33 3
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.|+|+++..|++.|.+++.|+-|+||++..+.-
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 599999999999999999999999999877643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-13 Score=152.41 Aligned_cols=248 Identities=13% Similarity=0.159 Sum_probs=161.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
.|.+.|..+.|... ....+++.+.|+.++|||+...+ +....+..|...|.++.+.|...
T Consensus 73 GH~~~V~~v~fsP~-----d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--------- 138 (493)
T PTZ00421 73 GQEGPIIDVAFNPF-----DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--------- 138 (493)
T ss_pred CCCCCEEEEEEcCC-----CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC---------
Confidence 36788999999642 12568888889999999998643 12344566888899988876421
Q ss_pred CCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--c
Q 046828 134 NSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 134 ~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~ 210 (627)
.+|+..+ .+++|+|||+++++.+.++. +...|.+|+|++ +
T Consensus 139 ---~iLaSgs----------------------------------~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 139 ---NVLASAG----------------------------------ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred ---CEEEEEe----------------------------------CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 3554322 24789999999999999998 456899999987 6
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+|+++. +++|+|||+++++.+.++.+|.... ... +.+......
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~------------~~~-------~~w~~~~~~----------------- 225 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK------------SQR-------CLWAKRKDL----------------- 225 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCc------------ceE-------EEEcCCCCe-----------------
Confidence 777765 6689999999999888887764320 000 111111000
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+... +.+...|+.|+|
T Consensus 226 --------------------------ivt~--------------------------------------G~s~s~Dr~Vkl 241 (493)
T PTZ00421 226 --------------------------IITL--------------------------------------GCSKSQQRQIML 241 (493)
T ss_pred --------------------------EEEE--------------------------------------ecCCCCCCeEEE
Confidence 0000 002346899999
Q ss_pred EECCCCe-EEEEeccC-CCCeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 370 KDIVSRS-VISQFRAH-TSPISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 370 wD~~s~~-~l~~~~aH-~~~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
||+.+.. ++..+..| ...+....|+++|.+|++++. ||+ |++||+. ++. .++.. ..
T Consensus 242 WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~-------~~~------------~~~~~-~~ 300 (493)
T PTZ00421 242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELM-------NER------------LTFCS-SY 300 (493)
T ss_pred EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEee-------CCc------------eEEEe-ec
Confidence 9998754 44444434 345677789999999999885 886 8999996 221 22222 22
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.....+..++|.|. +.+=...-.-.++|.+...
T Consensus 301 ~s~~~~~g~~~~pk--~~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 301 SSVEPHKGLCMMPK--WSLDTRKCEIARFYALTYH 333 (493)
T ss_pred cCCCCCcceEeccc--ccccccceeeeEEEEecCC
Confidence 22334778888883 3333333444577777644
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-14 Score=150.16 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+++|+.|.+|+=.--+--..++.|..-|.|+.|+|||.++||++.||+ |.|||=. +|. +
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGk-------tge------------~ 224 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGK-------TGE------------K 224 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCC-------Ccc------------E
Confidence 3567888888887666777788999999999999999999999999998 7999965 452 6
Q ss_pred EEEEee--cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 440 LYKLHR--GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 440 l~~l~r--G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
+.+|.. +|+ ..|+.|+||||++.++++|.|.|++||++.....
T Consensus 225 vg~l~~~~aHk-GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 225 VGELEDSDAHK-GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred EEEecCCCCcc-ccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 777742 333 3499999999999999999999999999987643
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=166.09 Aligned_cols=207 Identities=13% Similarity=0.172 Sum_probs=150.6
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
++|++||-+=+.+++.+. +.++|+.|.|.+ .+.|+|.++ +|++|+-.+.++++++.+|-.- +
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-------------V- 96 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-------------V- 96 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce-------------e-
Confidence 679999999999999986 677999999987 677888777 7999999999999999987431 1
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
|-+.|-..-
T Consensus 97 ------Rt~~FHhey----------------------------------------------------------------- 105 (1202)
T KOG0292|consen 97 ------RTVFFHHEY----------------------------------------------------------------- 105 (1202)
T ss_pred ------EEeeccCCC-----------------------------------------------------------------
Confidence 222221110
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
.|- .+++.|.+|+||+.+++++++.+.+|..-|-|-+|.|...++++||-|-| |||||+
T Consensus 106 ------------PWI--------lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT-VRVWDi 164 (1202)
T KOG0292|consen 106 ------------PWI--------LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT-VRVWDI 164 (1202)
T ss_pred ------------ceE--------EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce-EEEEee
Confidence 011 13457889999999999999999999999999999999999999999987 899998
Q ss_pred CCCCCCCCCCCCc----------cccCCCC-ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC-
Q 046828 416 MPSSSKGRSGSAS----------QTYDWTS-SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG- 483 (627)
Q Consensus 416 ~p~~~~~~~g~~~----------~~~~~~~-~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg- 483 (627)
. .-..+ +-.++ .+.++-. .-.-+.....||+.. |+-++|.|.--.|++|++|.-|++|.++....
T Consensus 165 s-GLRkk-~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 165 S-GLRKK-NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred c-chhcc-CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-cceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 5 11000 00000 0111110 001122234788875 89999999999999999999999999987642
Q ss_pred -eeeccccccccc
Q 046828 484 -ETVLQIQNSHVD 495 (627)
Q Consensus 484 -~~~~~~h~s~v~ 495 (627)
.-+.+.|..-|.
T Consensus 242 EvDtcrgH~nnVs 254 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVS 254 (1202)
T ss_pred eehhhhcccCCcc
Confidence 223456654443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-13 Score=137.75 Aligned_cols=257 Identities=13% Similarity=0.124 Sum_probs=166.4
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
|.-++..++|++ ++..++.++-|....||=-.+ ++..-.+-.|.|.|-++.+.-.. ..
T Consensus 9 HERplTqiKyN~------eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s-------------~~-- 66 (327)
T KOG0643|consen 9 HERPLTQIKYNR------EGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDS-------------KH-- 66 (327)
T ss_pred CccccceEEecC------CCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCc-------------ce--
Confidence 445677888876 247899999999999998876 43344445678888777764321 12
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA 218 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~ 218 (627)
+++ | ..+.+++|||.++|+++.+++++++|..+.|+. .+++++.++
T Consensus 67 liT-------G-------------------------SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 67 LIT-------G-------------------------SADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred eee-------c-------------------------cccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehh
Confidence 233 1 135789999999999999999999999999997 555555543
Q ss_pred ------eEEEEeCCCCce-------eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCC
Q 046828 219 ------QIYCFDALTLES-------KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLT 285 (627)
Q Consensus 219 ------~I~i~D~~t~e~-------~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t 285 (627)
.|.+||++.... .+.|.++ .+......||-+
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~------------------------------~skit~a~Wg~l------ 158 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP------------------------------DSKITSALWGPL------ 158 (327)
T ss_pred hcCcceEEEEEEccCChhhhcccCceEEecCC------------------------------ccceeeeeeccc------
Confidence 388999874331 1122111 111111111100
Q ss_pred CCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCC
Q 046828 286 PPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAG 365 (627)
Q Consensus 286 ~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG 365 (627)
+.+. ..+.++|
T Consensus 159 ------------------------------------------------------------------~~~i---i~Ghe~G 169 (327)
T KOG0643|consen 159 ------------------------------------------------------------------GETI---IAGHEDG 169 (327)
T ss_pred ------------------------------------------------------------------CCEE---EEecCCC
Confidence 1000 1357899
Q ss_pred eEEEEECCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCC--------CCC------------
Q 046828 366 MVVVKDIVSRS-VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSK--------GRS------------ 424 (627)
Q Consensus 366 ~V~IwD~~s~~-~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~--------~~~------------ 424 (627)
.|.+||+.+++ .+...+-|.+.|+.|+|+||.++++|+|.|-+ -++||... -.. .++
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~t-l~v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRT-LEVLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccc-eeeEEEeeecccccceecccccceEE
Confidence 99999999974 45566889999999999999999999999987 69998752 100 000
Q ss_pred -CCCccccCCCCceeEEEEE---------------eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 425 -GSASQTYDWTSSHVHLYKL---------------HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 425 -g~~~~~~~~~~~~~~l~~l---------------~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
|.+.-+.+..+...+.-++ ..||= ..|++|+|+|||+-.++|+.||.|+|...+
T Consensus 248 lgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 248 LGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc-cCcceeEECCCCcccccCCCCceEEEEEec
Confidence 0000001111100011000 12432 459999999999999999999999886544
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=143.39 Aligned_cols=244 Identities=18% Similarity=0.219 Sum_probs=168.4
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeee-cCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSR-RDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~-~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
+...+..+|.-+.|+- .+.++..+..++.+.||+++...-..++..+ |.+.|--+...|..
T Consensus 15 ~~~~~~~~v~Sv~wn~------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~------------ 76 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNC------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH------------ 76 (313)
T ss_pred HhhhhhhcceEEEEcc------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC------------
Confidence 4455677888888873 2378888999999999999986544455443 33454333333321
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVA 213 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~La 213 (627)
-++++.+. .+.+|++||.+++++++.+.-+..=..+.++| ..++
T Consensus 77 ~d~~atas----------------------------------~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~ 122 (313)
T KOG1407|consen 77 PDLFATAS----------------------------------GDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIA 122 (313)
T ss_pred CcceEEec----------------------------------CCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEE
Confidence 15555443 23789999999999999998777656678887 5666
Q ss_pred EE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++ -++.|.++|+++.+..... +.+. -++-++. . .+
T Consensus 123 ~~~kdD~it~id~r~~~~~~~~---~~~~-----------e~ne~~w-------~-~~---------------------- 158 (313)
T KOG1407|consen 123 VGNKDDRITFIDARTYKIVNEE---QFKF-----------EVNEISW-------N-NS---------------------- 158 (313)
T ss_pred EecCcccEEEEEecccceeehh---cccc-----------eeeeeee-------c-CC----------------------
Confidence 55 5778999999987654322 1110 0111111 1 00
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+++ + | ....-|.|.|-..
T Consensus 159 ---------------------------nd~-------F-----------------------f-----lt~GlG~v~ILsy 176 (313)
T KOG1407|consen 159 ---------------------------NDL-------F-----------------------F-----LTNGLGCVEILSY 176 (313)
T ss_pred ---------------------------CCE-------E-----------------------E-----EecCCceEEEEec
Confidence 000 0 0 0124588999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
...+++..|+||.+.+-||.|+|+|++||+||.|.. +-+||+. +- .++.-+-| + ...|
T Consensus 177 psLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~-EL------------------iC~R~isR-l-dwpV 234 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVD-EL------------------ICERCISR-L-DWPV 234 (313)
T ss_pred cccccccccccCCcceEEEEECCCCceEeeccccce-eeccChh-Hh------------------hhheeecc-c-cCce
Confidence 999999999999999999999999999999999975 7999985 21 12222322 2 2359
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..|+||.||++||++|.|--|-|=.++.
T Consensus 235 RTlSFS~dg~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 235 RTLSFSHDGRMLASASEDHFIDIAEVET 262 (313)
T ss_pred EEEEeccCcceeeccCccceEEeEeccc
Confidence 9999999999999999999888777654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-13 Score=136.28 Aligned_cols=261 Identities=14% Similarity=0.152 Sum_probs=167.6
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC--ceEEee-ecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN--VSELVS-RRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~--~~ells-~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
...++++|.-+.|.. ..+..+...|.++.++||+...... .+.++. .|.-.||-+++.|..
T Consensus 10 ~~gh~~r~W~~awhp-----~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g----------- 73 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHP-----GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG----------- 73 (312)
T ss_pred ecCCCCcEEEEEecc-----CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-----------
Confidence 456778887788853 2234677789999999999995332 233332 355667778877653
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC--ceEEEEec-CCeEEEEEecC--
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH--NYVHVLRF-RSTVYMVRCSP-- 209 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~--~~V~tL~f-~s~V~sV~~s~-- 209 (627)
.+||... .+.++.||.-..+ +++.+|+. .++|.+|++|.
T Consensus 74 --~~La~aS----------------------------------FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 74 --RYLASAS----------------------------------FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred --cEEEEee----------------------------------ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence 4655321 3578899976654 57889985 56999999986
Q ss_pred cEEEEEeCC-eEEEEeCCCCc---eeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCC
Q 046828 210 RIVAVGLAA-QIYCFDALTLE---SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 210 ~~LaV~~~~-~I~i~D~~t~e---~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
++||.+.-+ .|.||.+...+ +.-.|..|..- +--+...| ..|+
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD-------------VK~V~WHPt~dlL~------------------ 166 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD-------------VKHVIWHPTEDLLF------------------ 166 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc-------------ccEEEEcCCcceeE------------------
Confidence 899999866 59999887433 23333333221 11111111 1111
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
+.++
T Consensus 167 ----------------------------------------------------------------------------S~SY 170 (312)
T KOG0645|consen 167 ----------------------------------------------------------------------------SCSY 170 (312)
T ss_pred ----------------------------------------------------------------------------Eecc
Confidence 3457
Q ss_pred CCeEEEEECCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCC---CCCCCC-------CC-----
Q 046828 364 AGMVVVKDIVS---RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMP---SSSKGR-------SG----- 425 (627)
Q Consensus 364 dG~V~IwD~~s---~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p---~~~~~~-------~g----- 425 (627)
|.+|++|+-.. -.++++|.+|...|-+++|+|.|..|+++++|++ ++||.... ..+.+. +|
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ 249 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASG 249 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEec
Confidence 88899887662 2679999999999999999999999999999998 79998321 111000 00
Q ss_pred CCc------c-ccCCCCce-eEEEEEeecCCcCcEEEEEEccC-CCEEEEEeCCCeEEEEEcC
Q 046828 426 SAS------Q-TYDWTSSH-VHLYKLHRGMTSAVIQDICFSHY-SQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 426 ~~~------~-~~~~~~~~-~~l~~l~rG~t~a~I~sIaFSpD-g~~Las~S~dgTvhIw~i~ 479 (627)
.+. + +..+..+. .++.+. .+.+.-.|++|.|.|. +..|+++++||+|++|.+.
T Consensus 250 ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 000 0 00000000 111111 1222235999999995 7899999999999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=156.93 Aligned_cols=262 Identities=17% Similarity=0.174 Sum_probs=179.3
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+-+|..=|.+.++|||.++-..|+ -+.-.+-|||..+++..- .-+ +++.|
T Consensus 26 Pw~la~LynG~V~IWnyetqtmVk-sfeV~~~PvRa~kfiaRk-------------nWi-v~GsD--------------- 75 (794)
T KOG0276|consen 26 PWILAALYNGDVQIWNYETQTMVK-SFEVSEVPVRAAKFIARK-------------NWI-VTGSD--------------- 75 (794)
T ss_pred ceEEEeeecCeeEEEecccceeee-eeeecccchhhheeeecc-------------ceE-EEecC---------------
Confidence 567777788899999999844332 233457788887777543 333 23211
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCC-ceeEEEE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTL-ESKFSVL 235 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~-e~~~tl~ 235 (627)
+-.||+|+..|++.|++++ +..-|++|++.| -.+.++.++ .|++||-... .+.++++
T Consensus 76 ------------------D~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 76 ------------------DMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred ------------------CceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 2559999999999999999 556999999988 466666666 7999998764 4567888
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcC---ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGP---RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQL 312 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~---r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l 312 (627)
+|..- +-.+++.| .-.|.++-+.++..|.-.++. | .+.++.
T Consensus 138 GH~Hy-------------VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~----~---------------nfTl~g---- 181 (794)
T KOG0276|consen 138 GHEHY-------------VMQVAFNPKDPNTFASASLDRTVKVWSLGSPH----P---------------NFTLEG---- 181 (794)
T ss_pred CcceE-------------EEEEEecCCCccceeeeeccccEEEEEcCCCC----C---------------ceeeec----
Confidence 87532 23356665 577777777777666432210 0 001111
Q ss_pred hcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEE
Q 046828 313 AAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALC 392 (627)
Q Consensus 313 ~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~la 392 (627)
-+.|...+.-|-.+..| ...++..|-+|+|||.+++.++.++.+|+..|++++
T Consensus 182 -------HekGVN~Vdyy~~gdkp--------------------ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 182 -------HEKGVNCVDYYTGGDKP--------------------YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF 234 (794)
T ss_pred -------cccCcceEEeccCCCcc--------------------eEEecCCCceEEEeecchHHHHHHhhcccccceEEE
Confidence 12333334322111000 112567899999999999999999999999999999
Q ss_pred ECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 393 FDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 393 FspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
|.|.=.+++|||+||| +|||..... +....|.-|. .+|++|+--+.+..+++|.+.|.
T Consensus 235 fhp~lpiiisgsEDGT-vriWhs~Ty-------------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGT-VRIWNSKTY-------------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred ecCCCcEEEEecCCcc-EEEecCcce-------------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCc
Confidence 9999999999999999 799986411 1111222233 35899999999999999988887
Q ss_pred EEE
Q 046828 473 CHI 475 (627)
Q Consensus 473 vhI 475 (627)
|.|
T Consensus 293 i~v 295 (794)
T KOG0276|consen 293 VTV 295 (794)
T ss_pred EEE
Confidence 653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=142.92 Aligned_cols=193 Identities=19% Similarity=0.226 Sum_probs=136.5
Q ss_pred CcEEEEEECC-CCceEEEEe-cCCeEEEEEecC---cEE-EEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 179 PTAVRFYSLR-SHNYVHVLR-FRSTVYMVRCSP---RIV-AVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 179 ~~tV~lwdl~-t~~~V~tL~-f~s~V~sV~~s~---~~L-aV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
+++++|||+. ...+|+.++ +..+|++|..+. +.+ .++-+++|++||..-.+.+.|+.+|..-
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~------------ 149 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC------------ 149 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE------------
Confidence 3679999963 445788887 566999999985 344 4445889999999877777777665321
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
.|... .+|...++
T Consensus 150 ------------Iy~a~-----------------------~sp~~~nl-------------------------------- 162 (311)
T KOG0277|consen 150 ------------IYQAA-----------------------FSPHIPNL-------------------------------- 162 (311)
T ss_pred ------------EEEEe-----------------------cCCCCCCe--------------------------------
Confidence 11110 00000000
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNIN 411 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~ 411 (627)
| ++++.||..+|||++.......|.+|...|.+..|+. +-.+|+|++.|+. ||
T Consensus 163 ---------------------f----as~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr 216 (311)
T KOG0277|consen 163 ---------------------F----ASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VR 216 (311)
T ss_pred ---------------------E----EEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EE
Confidence 0 1346789999999986544445999999999999998 5678999999987 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCe-eeccc
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGE-TVLQI 489 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~-~~~~~ 489 (627)
+||+. .-. .++.+| .||.-| |..|+||| -...||++|.|-|++||+.....+. .....
T Consensus 217 ~wDir-~~r-----------------~pl~eL-~gh~~A-VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~ 276 (311)
T KOG0277|consen 217 GWDIR-NLR-----------------TPLFEL-NGHGLA-VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH 276 (311)
T ss_pred EEehh-hcc-----------------ccceee-cCCceE-EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence 99996 211 367888 677765 99999999 4568999999999999998854433 34445
Q ss_pred ccccccC
Q 046828 490 QNSHVDR 496 (627)
Q Consensus 490 h~s~v~~ 496 (627)
|...+-|
T Consensus 277 HtEFv~g 283 (311)
T KOG0277|consen 277 HTEFVCG 283 (311)
T ss_pred cceEEec
Confidence 5444433
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-13 Score=151.72 Aligned_cols=129 Identities=7% Similarity=0.086 Sum_probs=96.8
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-------ceEEeeecCCceEEEEEeeCCCCCCCCCCc
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-------VSELVSRRDDPVTFLQMQPLPAKSDGQEGF 132 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-------~~ells~~dG~V~~v~~lp~p~~~~~~D~f 132 (627)
.|.+.|..+.|... ....+++.|.|+.++|||+...+. ....+..|.+.|..+.+.|..
T Consensus 72 gH~~~V~~lafsP~-----~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g--------- 137 (568)
T PTZ00420 72 GHTSSILDLQFNPC-----FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN--------- 137 (568)
T ss_pred CCCCCEEEEEEcCC-----CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC---------
Confidence 46788999999532 125677888899999999986432 122456688889988887642
Q ss_pred CCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--c
Q 046828 133 RNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--R 210 (627)
Q Consensus 133 ~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~ 210 (627)
..+++.+ + .+++|+|||+++++.+.++.++..|.++.|++ +
T Consensus 138 ----~~iLaSg-------S--------------------------~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~ 180 (568)
T PTZ00420 138 ----YYIMCSS-------G--------------------------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN 180 (568)
T ss_pred ----CeEEEEE-------e--------------------------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC
Confidence 2232222 0 13789999999999999998888999999986 7
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPV 239 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~ 239 (627)
+|+++. +++|+|||+++++.+.++.+|..
T Consensus 181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence 777765 66899999999999888887753
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-13 Score=135.85 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=135.2
Q ss_pred CcEEEEEECCC---CceEEEEe--cCCeEEEEEecC--cEEEEEe-CCeEEEEeCC--CCceeEEEEcCCCCCCCCCCCc
Q 046828 179 PTAVRFYSLRS---HNYVHVLR--FRSTVYMVRCSP--RIVAVGL-AAQIYCFDAL--TLESKFSVLTYPVPHFGGQGTS 248 (627)
Q Consensus 179 ~~tV~lwdl~t---~~~V~tL~--f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~--t~e~~~tl~~~p~~~~~~~g~~ 248 (627)
+++||+|++.. -.+...|. +.-.|++|+++| ++||++. +.++.||.=. ++|++-+|++|.+.
T Consensus 36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-------- 107 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE-------- 107 (312)
T ss_pred CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc--------
Confidence 48899999984 33445554 344999999987 8999885 6689999755 56788899999875
Q ss_pred CcccccceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 249 GVNIGYGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 249 ~~~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
+-.+|++ +++||.++.
T Consensus 108 -----VK~Vaws~sG~~LATCSR--------------------------------------------------------- 125 (312)
T KOG0645|consen 108 -----VKCVAWSASGNYLATCSR--------------------------------------------------------- 125 (312)
T ss_pred -----eeEEEEcCCCCEEEEeeC---------------------------------------------------------
Confidence 3445553 477777764
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC---eEEEEeccCCCCeEEEEECCCCCEEEEE
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR---SVISQFRAHTSPISALCFDRSGTLLVTA 403 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~---~~l~~~~aH~~~Is~laFspdG~lLaTa 403 (627)
|..|-||.+... +++..++.|+..|--+.|+|.-.+|+++
T Consensus 126 -------------------------------------DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 126 -------------------------------------DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred -------------------------------------CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 344666665532 5788999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 404 SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 404 S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
|-|.+ |++|+-.+. + +| ..+..| .|+++ .|.+++|.++|..|+++++|+|++||..-
T Consensus 169 SYDnT-Ik~~~~~~d------d------dW----~c~~tl-~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 169 SYDNT-IKVYRDEDD------D------DW----ECVQTL-DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccCCe-EEEEeecCC------C------Ce----eEEEEe-cCccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 99988 899986531 1 22 244444 67765 69999999999999999999999999964
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=143.88 Aligned_cols=264 Identities=14% Similarity=0.165 Sum_probs=169.5
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceE-EEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVT-FLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~-~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
.+.+|...||+..+|||.. ++...++..|.|+++ ++-+.+++.. .++ +.+
T Consensus 115 ~~~IltgsYDg~~riWd~~--Gk~~~~~~Ght~~ik~v~~v~~n~~~-----------~~f-vsa--------------- 165 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK--GKSIKTIVGHTGPIKSVAWVIKNSSS-----------CLF-VSA--------------- 165 (423)
T ss_pred CceEEEeecCCeeEEEecC--CceEEEEecCCcceeeeEEEecCCcc-----------ceE-EEe---------------
Confidence 5889999999999999987 455778888999997 4445665521 122 222
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE-----ecCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCce
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL-----RFRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLES 230 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL-----~f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~ 230 (627)
..+.++++|-.+-++.+-.. .+...|-+|+..+ .+++++ -+..|.||+. ..+.
T Consensus 166 ------------------s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~-~~~~ 226 (423)
T KOG0313|consen 166 ------------------SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSV-ETDE 226 (423)
T ss_pred ------------------cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeeccc-CCCc
Confidence 13478999998887754332 2445899999865 555665 4668999993 2222
Q ss_pred eEEEEcCCCCCCC---CCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 231 KFSVLTYPVPHFG---GQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 231 ~~tl~~~p~~~~~---~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.-+++...+.... ..... ....|.+.+.| ++.|
T Consensus 227 ~~~~E~~s~~rrk~~~~~~~~------------------~~r~P~vtl~G------Ht~~-------------------- 262 (423)
T KOG0313|consen 227 EDELESSSNRRRKKQKREKEG------------------GTRTPLVTLEG------HTEP-------------------- 262 (423)
T ss_pred cccccccchhhhhhhhhhhcc------------------cccCceEEecc------cccc--------------------
Confidence 3333322211000 00000 00011111111 1111
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP 387 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~ 387 (627)
++. ..|.. +++..+++.|.+|++||+.+++.+..+.. ..+
T Consensus 263 -------------------Vs~-----------------V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ks 302 (423)
T KOG0313|consen 263 -------------------VSS-----------------VVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKS 302 (423)
T ss_pred -------------------eee-----------------EEEcC---CCceEeecccceEEEEEeecccceeeeec-Ccc
Confidence 000 00110 01112467899999999999998888775 457
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEEEE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAI 466 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las 466 (627)
+.++..+|...+||+||.|.+ ||+||-. .+ .|. .-.+.| -||++ .|.++.|+| +-..|++
T Consensus 303 l~~i~~~~~~~Ll~~gssdr~-irl~DPR-~~----~gs-----------~v~~s~-~gH~n-wVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 303 LNCISYSPLSKLLASGSSDRH-IRLWDPR-TG----DGS-----------VVSQSL-IGHKN-WVSSVKWSPTNEFQLVS 363 (423)
T ss_pred eeEeecccccceeeecCCCCc-eeecCCC-CC----CCc-----------eeEEee-ecchh-hhhheecCCCCceEEEE
Confidence 999999999999999999987 8999954 11 221 122333 68876 799999999 5567889
Q ss_pred EeCCCeEEEEEcCCCC-Ceeecccccccc
Q 046828 467 VSSRGTCHIFVLTPFG-GETVLQIQNSHV 494 (627)
Q Consensus 467 ~S~dgTvhIw~i~~~g-g~~~~~~h~s~v 494 (627)
+|.|+|+++||+.... ....+.+|+..+
T Consensus 364 ~S~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred EecCCeEEEEEeccCCCcceeeccCCceE
Confidence 9999999999998765 666788886544
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-14 Score=147.75 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=176.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC---ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN---VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~---~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.++.|+|.++.|-- .++.+....-|.+.-+|++..-.. ...++ .|..+|.++.+.|.-
T Consensus 221 ~~htdEVWfl~FS~------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDd------------ 281 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSH------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDD------------ 281 (519)
T ss_pred hhCCCcEEEEEEcC------CCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCC------------
Confidence 46788999999952 335666666788999999988665 23333 466788999998763
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC--CeEEEEEecC--cE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR--STVYMVRCSP--RI 211 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~--s~V~sV~~s~--~~ 211 (627)
|-| +.|++ +..+++||..||+..+.+... ..+.++++.| ..
T Consensus 282 ryL-laCg~----------------------------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 282 RYL-LACGF----------------------------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR 326 (519)
T ss_pred CeE-EecCc----------------------------------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence 233 33331 134999999999999988754 4788888887 44
Q ss_pred EEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCC
Q 046828 212 VAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPS 288 (627)
Q Consensus 212 LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~ 288 (627)
+++| .+.+|+-||+.- +.+...++-..|. +..+|+.+ .|+-....++.+.+.
T Consensus 327 ~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~------------v~dlait~Dgk~vl~v~~d~~i~l~------------ 381 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDG-NILGNWEGVRDPK------------VHDLAITYDGKYVLLVTVDKKIRLY------------ 381 (519)
T ss_pred eEecCCCCcEEEecCCc-chhhcccccccce------------eEEEEEcCCCcEEEEEecccceeee------------
Confidence 5555 566899999854 3343433322221 33455533 444333333322211
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEE
Q 046828 289 VSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVV 368 (627)
Q Consensus 289 ~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~ 368 (627)
-+++.... ++... +.+ ++++. .| +.|.++. ..-.+..|+
T Consensus 382 ----------------~~e~~~dr--~lise-~~~---its~~-----------iS-----~d~k~~L---vnL~~qei~ 420 (519)
T KOG0293|consen 382 ----------------NREARVDR--GLISE-EQP---ITSFS-----------IS-----KDGKLAL---VNLQDQEIH 420 (519)
T ss_pred ----------------chhhhhhh--ccccc-cCc---eeEEE-----------Ec-----CCCcEEE---EEcccCeeE
Confidence 11111100 00000 011 11110 00 1122210 113577899
Q ss_pred EEECCCCeEEEEeccCCCC--eEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 369 VKDIVSRSVISQFRAHTSP--ISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 369 IwD~~s~~~l~~~~aH~~~--Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
+||++..+.+..+.+|... |-.=||-- +.+++|+||+|+. |+||+.. +|. .+..| .
T Consensus 421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~-------sgk------------ll~~L-s 479 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRI-------SGK------------LLAVL-S 479 (519)
T ss_pred EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEcc-------CCc------------eeEee-c
Confidence 9999988888889999754 33346754 4589999999998 8999975 442 44444 8
Q ss_pred cCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCC
Q 046828 446 GMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 446 G~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
||.. .|.+++|+| |-.++|++|+||||+||...+.
T Consensus 480 GHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 480 GHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9875 499999999 7789999999999999998764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-13 Score=135.54 Aligned_cols=230 Identities=16% Similarity=0.208 Sum_probs=166.7
Q ss_pred eccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCC
Q 046828 71 DKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNS 150 (627)
Q Consensus 71 d~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~ 150 (627)
|++-+++....+++...-++.+++||+-.++...++..+ |.--.+.+.|.- ..+++..
T Consensus 68 dql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--~eni~i~wsp~g-------------~~~~~~~------- 125 (313)
T KOG1407|consen 68 DQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK--GENINITWSPDG-------------EYIAVGN------- 125 (313)
T ss_pred hhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc--CcceEEEEcCCC-------------CEEEEec-------
Confidence 444445556688888888999999999987755555442 222344454432 3444421
Q ss_pred cceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cE-EEEEeCCeEEEEeCCC
Q 046828 151 GLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RI-VAVGLAAQIYCFDALT 227 (627)
Q Consensus 151 g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~-LaV~~~~~I~i~D~~t 227 (627)
-+..|.+.|.++.+.+++.+|...+..+.++- ++ ++...-+.|.|..-..
T Consensus 126 ---------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 126 ---------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred ---------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 12569999999999999999998888888864 33 3444457899999999
Q ss_pred CceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhh
Q 046828 228 LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYA 305 (627)
Q Consensus 228 ~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a 305 (627)
+|.+++|..||.. .-.|.++| |++|.++
T Consensus 179 Lkpv~si~AH~sn-------------CicI~f~p~GryfA~Gs------------------------------------- 208 (313)
T KOG1407|consen 179 LKPVQSIKAHPSN-------------CICIEFDPDGRYFATGS------------------------------------- 208 (313)
T ss_pred cccccccccCCcc-------------eEEEEECCCCceEeecc-------------------------------------
Confidence 9999999988742 22355544 5555543
Q ss_pred hhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCC
Q 046828 306 VESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHT 385 (627)
Q Consensus 306 ~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~ 385 (627)
.|-.|.+||+...-++..|..|.
T Consensus 209 ---------------------------------------------------------ADAlvSLWD~~ELiC~R~isRld 231 (313)
T KOG1407|consen 209 ---------------------------------------------------------ADALVSLWDVDELICERCISRLD 231 (313)
T ss_pred ---------------------------------------------------------ccceeeccChhHhhhheeecccc
Confidence 45568899999988999999999
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
-||..|+||.||++||+||+|- .|-|=+++ +|. ++++.. ..+.-..++|.|....||
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh-~IDIA~ve-------tGd------------~~~eI~---~~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDH-FIDIAEVE-------TGD------------RVWEIP---CEGPTFTVAWHPKRPLLA 288 (313)
T ss_pred CceEEEEeccCcceeeccCccc-eEEeEecc-------cCC------------eEEEee---ccCCceeEEecCCCceee
Confidence 9999999999999999999994 35444443 452 667664 344578999999999999
Q ss_pred EEeCC---------CeEEEEEcC
Q 046828 466 IVSSR---------GTCHIFVLT 479 (627)
Q Consensus 466 s~S~d---------gTvhIw~i~ 479 (627)
.+.+| |+|+||-+.
T Consensus 289 yA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 289 YACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EEecCCCCccccccceeEEecCC
Confidence 87765 566666543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-12 Score=135.57 Aligned_cols=287 Identities=15% Similarity=0.175 Sum_probs=177.3
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
-.++||.|..+.|.- ++..+...+.++-++||++....+..++. +.+.=+.++.-. ...+
T Consensus 102 ltgHKDSVt~~~Fsh------dgtlLATGdmsG~v~v~~~stg~~~~~~~----~e~~dieWl~WH----------p~a~ 161 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSH------DGTLLATGDMSGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWH----------PRAH 161 (399)
T ss_pred ecCCCCceEEEEEcc------CceEEEecCCCccEEEEEcccCceEEEee----cccCceEEEEec----------cccc
Confidence 456899999999963 22556667778889999999977655555 333333333211 0013
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAV 214 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV 214 (627)
+|+ .++ .++.|-.|.+-.+.+.+.+..+ +++.+=.|.| +++++
T Consensus 162 ill-AG~---------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 162 ILL-AGS---------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred EEE-eec---------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence 433 221 1366999999998888888855 4888888876 67766
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC-ceEEEcCC-CCCcCC----CCccCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP-RWLAYASN-NPLLPN----TGRLSPQSLTPP 287 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~-r~LAy~~~-~~~v~~----~gr~~~q~~t~~ 287 (627)
+. ++.|++||..|++.++.+.....-. ..+++++- -|+++..+ +..+.. .|.+ -..+.+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~------------~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV--v~~~n~ 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLE------------LPCISLNLAGSTLTKGNSEGVACGVNNGSGKV--VNCNNG 273 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCc------------CCccccccccceeEeccCCccEEEEccccceE--EEecCC
Confidence 64 6689999999999999987321100 11122211 12222221 111100 0100 000000
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
. .|.-.++.+..... + .+ ..|. ..++ ..+.+.-||+|
T Consensus 274 ~-~~~l~~~~e~~~es--------v-----------------------------e~---~~~s-s~lp-L~A~G~vdG~i 310 (399)
T KOG0296|consen 274 T-VPELKPSQEELDES--------V-----------------------------ES---IPSS-SKLP-LAACGSVDGTI 310 (399)
T ss_pred C-Cccccccchhhhhh--------h-----------------------------hh---cccc-cccc-hhhcccccceE
Confidence 0 00000000000000 0 00 0000 0111 11356789999
Q ss_pred EEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC
Q 046828 368 VVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM 447 (627)
Q Consensus 368 ~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~ 447 (627)
.|||+.+.+. .++-.|..+|..|.|-+ -.+|+||+.+|+ ||.||.+ +|. .++.+ +||
T Consensus 311 ~iyD~a~~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaR-------tG~------------l~~~y-~GH 367 (399)
T KOG0296|consen 311 AIYDLAASTL-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDAR-------TGQ------------LKFTY-TGH 367 (399)
T ss_pred EEEecccchh-heeccCCCceEEEEEcC-cchheeeccCce-EEeeecc-------ccc------------eEEEE-ecC
Confidence 9999998654 45556999999999999 788999999997 8999986 552 55555 798
Q ss_pred CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 448 TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 448 t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+. .|++++.+||.++++++|.|+|.+||.+.
T Consensus 368 ~~-~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QM-GILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ch-heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 74 59999999999999999999999999874
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=148.47 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=129.2
Q ss_pred CcEEEEEECCCCceE---EEEe-cCCeEEEEEecCcEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYV---HVLR-FRSTVYMVRCSPRIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V---~tL~-f~s~V~sV~~s~~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
+.++.+||+.+...+ +.|. ++..|..|.|..++|+++..+ +|++|++.|+|.+.++.+|..
T Consensus 296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkR-------------- 361 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-------------- 361 (499)
T ss_pred CceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccc--------------
Confidence 478999999877643 3343 567999999999999988655 799999999999999987743
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
-+|..... ||
T Consensus 362 ---------GIAClQYr------~r------------------------------------------------------- 371 (499)
T KOG0281|consen 362 ---------GIACLQYR------DR------------------------------------------------------- 371 (499)
T ss_pred ---------cceehhcc------Ce-------------------------------------------------------
Confidence 22222110 11
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIF 413 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vw 413 (627)
+. .+++.|.+|++||+..|.++..+++|..-|.|+.|+ .+.+++|.-||+ |+||
T Consensus 372 --------------------lv---VSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvW 425 (499)
T KOG0281|consen 372 --------------------LV---VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVW 425 (499)
T ss_pred --------------------EE---EecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEE
Confidence 00 134678899999999999999999999999999996 689999999998 8999
Q ss_pred eCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 414 RIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 414 di~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
|+...... + . ++...++..+-+ +..+|..+-| |...++++|.|.||-||+...
T Consensus 426 dl~aaldp--r-------a-~~~~~Cl~~lv~--hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 426 DLQAALDP--R-------A-PASTLCLRTLVE--HSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred ecccccCC--c-------c-cccchHHHhhhh--ccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 98521100 0 0 011113333322 2346888887 556899999999999999864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=150.57 Aligned_cols=228 Identities=15% Similarity=0.222 Sum_probs=170.8
Q ss_pred CeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
..-++.|..+| +++|+.+- .+|+.+...|+..||.+++.|+- . .. ++|.
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnD-------s------kF--~t~S-------------- 199 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPND-------S------KF--LTCS-------------- 199 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCC-------c------ee--EEec--------------
Confidence 45566666555 99999886 45666666666889999998852 2 11 2221
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~ 235 (627)
.+++|+|||.+-.++-..|..+. .|.+|++.| -+||++.++ .|++||.++++++-++.
T Consensus 200 ------------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh 261 (464)
T KOG0284|consen 200 ------------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH 261 (464)
T ss_pred ------------------CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence 14789999999888878888665 899999988 577888766 69999999999998888
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
.|.+. +-.+.+.+ .||+.
T Consensus 262 ~HKnt-------------Vl~~~f~~n~N~Llt----------------------------------------------- 281 (464)
T KOG0284|consen 262 GHKNT-------------VLAVKFNPNGNWLLT----------------------------------------------- 281 (464)
T ss_pred hccce-------------EEEEEEcCCCCeeEE-----------------------------------------------
Confidence 87653 11122221 33333
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
++.|..++++|+.+.+.+..+++|...|.+++|
T Consensus 282 -----------------------------------------------~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~W 314 (464)
T KOG0284|consen 282 -----------------------------------------------GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTW 314 (464)
T ss_pred -----------------------------------------------ccCCceEEEEehhHhHHHHHhhcchhhheeecc
Confidence 346778999999999999999999999999999
Q ss_pred CC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 394 DR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 394 sp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
+| .-.+|.++..||. |..|.+... ..+...--+|.. .|++++|.|=|..||+++.|.|
T Consensus 315 hP~~~~lftsgg~Dgs-vvh~~v~~~-------------------~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsnd~t 373 (464)
T KOG0284|consen 315 HPLNESLFTSGGSDGS-VVHWVVGLE-------------------EPLGEIPPAHDG-EIWSLAYHPLGHILATGSNDRT 373 (464)
T ss_pred ccccccceeeccCCCc-eEEEecccc-------------------ccccCCCccccc-ceeeeeccccceeEeecCCCcc
Confidence 99 5678899999998 688887411 122333334443 4999999999999999999999
Q ss_pred EEEEEcCCCCCe
Q 046828 473 CHIFVLTPFGGE 484 (627)
Q Consensus 473 vhIw~i~~~gg~ 484 (627)
++.|.-...+..
T Consensus 374 ~rfw~r~rp~d~ 385 (464)
T KOG0284|consen 374 VRFWTRNRPGDK 385 (464)
T ss_pred eeeeccCCCCCc
Confidence 999998765543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-13 Score=139.01 Aligned_cols=224 Identities=15% Similarity=0.166 Sum_probs=160.2
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeee---cCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeec
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSR---RDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHV 157 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~---~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~ 157 (627)
..++..|.|..+++|-++.+.++.+.+.. |.+.|-.|.+.+.. .. ++.
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-------------tr--~~S-------------- 210 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-------------TR--FCS-------------- 210 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-------------Ce--EEe--------------
Confidence 57888999999999999998877776665 55666666665432 11 121
Q ss_pred cCcccccCCCCCCCCCCCCcCCcEEEEEEC-------------------------CCCceEEEEe-cCCeEEEEEecC-c
Q 046828 158 GRDGLVRDGYDEPQPGNVAMSPTAVRFYSL-------------------------RSHNYVHVLR-FRSTVYMVRCSP-R 210 (627)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl-------------------------~t~~~V~tL~-f~s~V~sV~~s~-~ 210 (627)
|+|| ++|+||+. .++.++-+|. +..+|-+|.+.. .
T Consensus 211 --------gS~D----------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~ 272 (423)
T KOG0313|consen 211 --------GSWD----------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT 272 (423)
T ss_pred --------eccc----------ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC
Confidence 3343 77888881 2344667777 456999999987 3
Q ss_pred -EEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 211 -IVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 211 -~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
++.++.+-+|+.||+.++.+.-++.+.-. ...++.+| ++||.
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~ks--------------l~~i~~~~~~~Ll~~--------------------- 317 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTNKS--------------LNCISYSPLSKLLAS--------------------- 317 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecCcc--------------eeEeecccccceeee---------------------
Confidence 34455677999999999998888766311 22233322 22332
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
++.|-.+
T Consensus 318 -------------------------------------------------------------------------gssdr~i 324 (423)
T KOG0313|consen 318 -------------------------------------------------------------------------GSSDRHI 324 (423)
T ss_pred -------------------------------------------------------------------------cCCCCce
Confidence 3456678
Q ss_pred EEEECCCCe---EEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 368 VVKDIVSRS---VISQFRAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 368 ~IwD~~s~~---~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
++||.+++. +..+|.+|..-|+++.++|... +|+++|.|++ +++||+. .. . ..+|.+
T Consensus 325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvR-S~----k-------------~plydI 385 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVR-ST----K-------------APLYDI 385 (423)
T ss_pred eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEec-cC----C-------------Ccceee
Confidence 888887652 5668899999999999999765 6899999998 7999996 22 1 168888
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+ | ..+|.++.|+. +..|++|+.|.+++||.-.+.
T Consensus 386 ~~-h-~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 386 AG-H-NDKVLSVDWNE-GGLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred cc-C-CceEEEEeccC-CceEEeccCcceEEEeccccc
Confidence 54 4 45799999964 568999999999999986653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.9e-12 Score=127.39 Aligned_cols=177 Identities=15% Similarity=0.191 Sum_probs=117.8
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC--eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA--QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~--~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
++|++||+++++.+..++....+.++.+++ ++++++..+ .+++||..+++....+.....
T Consensus 95 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------- 158 (300)
T TIGR03866 95 NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---------------- 158 (300)
T ss_pred CeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC----------------
Confidence 679999999999998888766778899986 677776543 578899988876544321111
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
++.+++.++... + +
T Consensus 159 -----~~~~~~s~dg~~---------------------------------------l--------------~-------- 172 (300)
T TIGR03866 159 -----PRFAEFTADGKE---------------------------------------L--------------W-------- 172 (300)
T ss_pred -----ccEEEECCCCCE---------------------------------------E--------------E--------
Confidence 123344332100 0 0
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCC-----C--CeEEEEECCCCCEEEEEe-CCC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHT-----S--PISALCFDRSGTLLVTAS-IHG 407 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~-----~--~Is~laFspdG~lLaTaS-~dG 407 (627)
..+..+|.|.+||+.+++.+..+..+. . ....++|+|+|++++.+. .++
T Consensus 173 -----------------------~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 173 -----------------------VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred -----------------------EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 012357889999999998777665332 1 134688999999865543 344
Q ss_pred CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCCe
Q 046828 408 NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGGE 484 (627)
Q Consensus 408 t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg~ 484 (627)
+ |.|||+. ++. .+..+..+ ..+.+++|+||+++|++++ .+|+|+||++......
T Consensus 230 ~-i~v~d~~-------~~~------------~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 230 R-VAVVDAK-------TYE------------VLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred e-EEEEECC-------CCc------------EEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 4 8999985 221 22223223 2488999999999999874 6899999999875433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=136.30 Aligned_cols=247 Identities=13% Similarity=0.154 Sum_probs=165.5
Q ss_pred CCCCcEEEEEeeccCC------CCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 60 ELKDQVLWSSFDKLEL------SPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~------~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
+.+--.....||..|. ....-..+++..-|+.+|+||+.........+..|...|..+...+.
T Consensus 47 ~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~----------- 115 (311)
T KOG0277|consen 47 DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV----------- 115 (311)
T ss_pred CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc-----------
Confidence 4444445666665321 11222556666668889999988877666666777776655554332
Q ss_pred CCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---
Q 046828 134 NSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--- 209 (627)
Q Consensus 134 ~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--- 209 (627)
|.-..++ ++|| ++|+|||...++-|+|+. +++.||...++|
T Consensus 116 --~r~~~lt-----------------------sSWD----------~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 116 --RRRIFLT-----------------------SSWD----------GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred --cceeEEe-----------------------eccC----------CceEeecCCCCcceEeecCCccEEEEEecCCCCC
Confidence 1112221 2354 889999999999999988 456999999997
Q ss_pred cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCC
Q 046828 210 RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPS 288 (627)
Q Consensus 210 ~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~ 288 (627)
.+++++. ++...+||++..-....|+-|... ++...|--|-.+
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E-----------------il~cdw~ky~~~------------------- 204 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMSIEAHNSE-----------------ILCCDWSKYNHN------------------- 204 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeEEEeccce-----------------eEeecccccCCc-------------------
Confidence 6777765 567999998754333335444211 111122111110
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEE
Q 046828 289 VSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVV 368 (627)
Q Consensus 289 ~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~ 368 (627)
.+ +.++.|+.|+
T Consensus 205 ----------------------------------------------------------------vl----~Tg~vd~~vr 216 (311)
T KOG0277|consen 205 ----------------------------------------------------------------VL----ATGGVDNLVR 216 (311)
T ss_pred ----------------------------------------------------------------EE----EecCCCceEE
Confidence 00 1356799999
Q ss_pred EEECCCCe-EEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 369 VKDIVSRS-VISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 369 IwD~~s~~-~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
+||+.+.+ ++..+.+|.-.|..|+|||. -.+||+||-|=| +||||.+... +. ...++ -
T Consensus 217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~d-----s~-----------~e~~~---~ 276 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQD-----SA-----------IETVD---H 276 (311)
T ss_pred EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccch-----hh-----------hhhhh---c
Confidence 99999874 68889999999999999996 568999999988 7999976211 10 11222 1
Q ss_pred CCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEE
Q 046828 447 MTSAVIQDICFSH-YSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 447 ~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~ 477 (627)
|+. =|..+.||+ +..++|+++-|+++.||+
T Consensus 277 HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 277 HTE-FVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cce-EEeccccccccCceeeecccccceeeec
Confidence 221 278899998 888999999999999997
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=143.78 Aligned_cols=215 Identities=19% Similarity=0.273 Sum_probs=147.2
Q ss_pred cEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
.++.++|-.+++.+.+++.+. .|.+|.+++ +.++++..+ .|+||.+.+-.+...+..|..| +.
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~-------------V~ 307 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEP-------------VT 307 (506)
T ss_pred CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccccc-------------ce
Confidence 678999999999999999877 999999998 555566544 6999998877666556555544 22
Q ss_pred eeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 256 PMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 256 ~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
-+.+. +.||-.++++....+... +.|+......-+ -.+..|... .
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~-----------------~~g~~lt~vs~~-----------~s~v~~ts~-----~ 354 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDI-----------------SSGSQLTVVSDE-----------TSDVEYTSA-----A 354 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEc-----------------cCCcEEEEEeec-----------cccceeEEe-----e
Confidence 23333 367777776654221100 011111000000 011222221 1
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIF 413 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vw 413 (627)
.+|||. .| ..+..||.|+|||+.+...++.|.+|++||.+|+|+.+|-+|||+.+||. |++|
T Consensus 355 fHpDgL-------------if----gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lw 416 (506)
T KOG0289|consen 355 FHPDGL-------------IF----GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLW 416 (506)
T ss_pred EcCCce-------------EE----eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEE
Confidence 234441 12 24678999999999999999999999999999999999999999999997 8999
Q ss_pred eCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 414 RIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 414 di~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
|++... ..+.+.+..+ -.|.+++|.+.|++|++++.|=+|++++-
T Consensus 417 DLRKl~-----------------n~kt~~l~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 417 DLRKLK-----------------NFKTIQLDEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred Eehhhc-----------------ccceeecccc---ccceeEEEcCCCCeEEeecceeEEEEEec
Confidence 996221 0133444322 24899999999999999988888888874
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=150.27 Aligned_cols=294 Identities=16% Similarity=0.213 Sum_probs=178.4
Q ss_pred CCCeEEEEe--ccCcEEEEecCCCC----CceE----E---eeecCCceEEEEEeeCCCC-CCCCCCcCCCCCEEEEEEc
Q 046828 79 SFKHVLLLG--YSNGFQVLDVEDAT----NVSE----L---VSRRDDPVTFLQMQPLPAK-SDGQEGFRNSHPLLLVVAC 144 (627)
Q Consensus 79 ~~~~vl~~G--y~~G~qVWdv~~~~----~~~e----l---ls~~dG~V~~v~~lp~p~~-~~~~D~f~~~rpLlavv~~ 144 (627)
++.++..+| +|+|..||+.+.-. +..| . +..|+|.|.|+++.|+-.. +.+.|. -++ ..|
T Consensus 24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD-----~~v--~iW 96 (942)
T KOG0973|consen 24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD-----RLV--MIW 96 (942)
T ss_pred CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc-----ceE--EEe
Confidence 457888899 99999999987532 1122 1 2457899999999876532 111111 111 113
Q ss_pred cCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-eCCeE
Q 046828 145 DEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-LAAQI 220 (627)
Q Consensus 145 d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I 220 (627)
+... .|. ...+|.... -.-| +.=+.+..|. +.+.|.+|.+++ .+||++ .+++|
T Consensus 97 ~~~~-~~~---------~~~fgs~g~--------~~~v-----E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 97 ERAE-IGS---------GTVFGSTGG--------AKNV-----ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred eecc-cCC---------ccccccccc--------cccc-----ceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence 3321 010 001111000 0111 1223566776 556999999997 677765 67799
Q ss_pred EEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCC
Q 046828 221 YCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNG 298 (627)
Q Consensus 221 ~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~g 298 (627)
.|||+.|++++.++.+|... +.-++++| +++|.-+++.++.+|-....+
T Consensus 154 iiwn~~tF~~~~vl~~H~s~-------------VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---------------- 204 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSL-------------VKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---------------- 204 (942)
T ss_pred EEEccccceeeeeeeccccc-------------ccceEECCccCeeeeecCCceEEEEEcccce----------------
Confidence 99999999999999998643 22366766 999999998887765322100
Q ss_pred cccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCcccc-Ccc-c-ccccCCCCCCeEEEEECCCC
Q 046828 299 NLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKA-GRN-A-SHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 299 s~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~-g~~-~-~~~~~~~~dG~V~IwD~~s~ 375 (627)
..|.+.+- +.+.. .+-|| ...+|.+ |.+ + .|. --+..-.+.|.+-.+-
T Consensus 205 ---------i~k~It~p---f~~~~---~~T~f-------------~RlSWSPDG~~las~nA-~n~~~~~~~IieR~tW 255 (942)
T KOG0973|consen 205 ---------IEKSITKP---FEESP---LTTFF-------------LRLSWSPDGHHLASPNA-VNGGKSTIAIIERGTW 255 (942)
T ss_pred ---------eeEeeccc---hhhCC---Cccee-------------eecccCCCcCeecchhh-ccCCcceeEEEecCCc
Confidence 00111000 00000 00111 1122322 211 1 111 0122346788888888
Q ss_pred eEEEEeccCCCCeEEEEECCC-------------CC----EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 376 SVISQFRAHTSPISALCFDRS-------------GT----LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspd-------------G~----lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+.-..|-+|..|+.+++|+|. +. .+|+||.|++ |-||... . - +
T Consensus 256 k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~-~------~------------R 315 (942)
T KOG0973|consen 256 KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTA-L------P------------R 315 (942)
T ss_pred eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc-EEEEecC-C------C------------C
Confidence 888899999999999999985 22 6899999998 7999864 1 1 1
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+.-.+. .....|.|++|||||.-|.++|.||||.++..++.
T Consensus 316 Pl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 2221111 12345999999999999999999999999998764
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=139.16 Aligned_cols=112 Identities=16% Similarity=0.302 Sum_probs=84.9
Q ss_pred CCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC-CCc
Q 046828 360 DTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW-TSS 436 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~-~~~ 436 (627)
.++.|++|.+||+++. +++..|..|...|..|.|||. -+.||+++.||+ ++|||+...+.. ....+. .+.
T Consensus 290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig~e------q~~eda~dgp 362 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIGEE------QSPEDAEDGP 362 (422)
T ss_pred eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccccc------cChhhhccCC
Confidence 3467899999999987 468999999999999999996 678999999998 699999633211 000111 122
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEE-EEEeCCCeEEEEEcCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWI-AIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~L-as~S~dgTvhIw~i~~ 480 (627)
...++ .+.||+ ++|.+++|+|..-|+ |++++|+.+|||....
T Consensus 363 pEllF-~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 363 PELLF-IHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cceeE-EecCcc-cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22333 458987 579999999987765 5788999999999863
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=146.89 Aligned_cols=232 Identities=15% Similarity=0.231 Sum_probs=154.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCce-EEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV-TFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V-~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.|...|-.++|.++ +.++|..|||..+++||++++. .+...+.+-+ .|+++.|.. +-
T Consensus 256 gH~k~Vrd~~~s~~------g~~fLS~sfD~~lKlwDtETG~---~~~~f~~~~~~~cvkf~pd~-------------~n 313 (503)
T KOG0282|consen 256 GHRKPVRDASFNNC------GTSFLSASFDRFLKLWDTETGQ---VLSRFHLDKVPTCVKFHPDN-------------QN 313 (503)
T ss_pred cchhhhhhhhcccc------CCeeeeeecceeeeeeccccce---EEEEEecCCCceeeecCCCC-------------Cc
Confidence 35666777777664 3789999999999999999855 4555555544 888887764 22
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC---cEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP---RIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~---~~LaV 214 (627)
+.+|+ | ++.+|+.||+|+++.|+++..+ ..|.+|.|-+ ++|.+
T Consensus 314 ~fl~G-------~--------------------------sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 314 IFLVG-------G--------------------------SDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred EEEEe-------c--------------------------CCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 34443 1 2478999999999999998754 5888888854 55555
Q ss_pred EeCCeEEEEeCCCCceeEEEEc---CCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 215 GLAAQIYCFDALTLESKFSVLT---YPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 215 ~~~~~I~i~D~~t~e~~~tl~~---~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+.+..+.||+....-.+.-+.. |..| .+++.| .|+|--
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP---------------~~~~~P~~~~~~aQ---------------------- 403 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMP---------------CLTLHPNGKWFAAQ---------------------- 403 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCc---------------ceecCCCCCeehhh----------------------
Confidence 5666899999877544322221 2222 233322 222211
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+.+..|.|
T Consensus 404 ------------------------------------------------------------------------s~dN~i~i 411 (503)
T KOG0282|consen 404 ------------------------------------------------------------------------SMDNYIAI 411 (503)
T ss_pred ------------------------------------------------------------------------ccCceEEE
Confidence 12223333
Q ss_pred EECCCC---eEEEEeccCCCC--eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 370 KDIVSR---SVISQFRAHTSP--ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 370 wD~~s~---~~l~~~~aH~~~--Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
+.+... ..-..|++|..+ -..+.|||||.+|++|+.+|. +.+||..+. +++...
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~--------------------kl~~~l 470 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTT--------------------KLVSKL 470 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhh--------------------hhhhcc
Confidence 332221 123467777533 345799999999999999998 799998632 333333
Q ss_pred ecCCcCcEEEEEEccC-CCEEEEEeCCCeEEEEE
Q 046828 445 RGMTSAVIQDICFSHY-SQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 445 rG~t~a~I~sIaFSpD-g~~Las~S~dgTvhIw~ 477 (627)
..++ ..+..+.|.|- ...||+++-+|-|+||+
T Consensus 471 kah~-~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 KAHD-QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCC-cceEEEEecCCCcceeEecccCceeEecC
Confidence 4453 35899999994 45788999999999995
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=142.06 Aligned_cols=246 Identities=19% Similarity=0.198 Sum_probs=186.0
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
...+|.+|....+.+|+-.. +.+.+|....+..|+.+.+.+.- ..|||-.
T Consensus 187 s~n~laValg~~vylW~~~s-~~v~~l~~~~~~~vtSv~ws~~G-------------~~LavG~---------------- 236 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASS-GSVTELCSFGEELVTSVKWSPDG-------------SHLAVGT---------------- 236 (484)
T ss_pred cCCeEEEEecceEEEEecCC-CceEEeEecCCCceEEEEECCCC-------------CEEEEee----------------
Confidence 47799999999999999987 45788888777888888877643 4566522
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec--CCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEE-EE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF--RSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFS-VL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f--~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~t-l~ 235 (627)
..++|.|||.++.+.+.++.. ...|-+++++..+|.+|. ++.|..||++..+.... +.
T Consensus 237 ------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~ 298 (484)
T KOG0305|consen 237 ------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQ 298 (484)
T ss_pred ------------------cCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhh
Confidence 236799999999999999987 459999999998888875 56899999998775544 33
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|... .|| |+++.+..
T Consensus 299 ~H~qe------VCg--------------Lkws~d~~-------------------------------------------- 314 (484)
T KOG0305|consen 299 GHRQE------VCG--------------LKWSPDGN-------------------------------------------- 314 (484)
T ss_pred cccce------eee--------------eEECCCCC--------------------------------------------
Confidence 44321 111 33333210
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR 395 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp 395 (627)
..++++.|..|.|||....+++..|..|...|-+++|+|
T Consensus 315 -----------------------------------------~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP 353 (484)
T KOG0305|consen 315 -----------------------------------------QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCP 353 (484)
T ss_pred -----------------------------------------eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCC
Confidence 012467899999999988899999999999999999999
Q ss_pred -CCCEEEEE--eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE--EeCC
Q 046828 396 -SGTLLVTA--SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI--VSSR 470 (627)
Q Consensus 396 -dG~lLaTa--S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las--~S~d 470 (627)
...+||+| +.|++ |++||+. +|. ++..+. +...|.+|.||+..+-|++ |-.+
T Consensus 354 ~q~~lLAsGGGs~D~~-i~fwn~~-------~g~------------~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 354 WQSGLLATGGGSADRC-IKFWNTN-------TGA------------RIDSVD---TGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred CccCceEEcCCCcccE-EEEEEcC-------CCc------------Eecccc---cCCceeeEEEcCCCCEEEEecCCCC
Confidence 67799996 45776 8999986 342 444443 4567999999999977776 4456
Q ss_pred CeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 471 GTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 471 gTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
+-|.||+.........+..|+..|.--.+.|
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSP 441 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECC
Confidence 7899999999888888999988765433344
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=141.14 Aligned_cols=182 Identities=21% Similarity=0.284 Sum_probs=129.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
++..||.|+||.+.++.++..|. +|+..|.||.|+.|+..+.++|.|-+ +||--++ +|.
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlK-------SGK------------ 339 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLK-------SGK------------ 339 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccc-------cch------------
Confidence 46789999999999999999998 99999999999999999999999976 7998776 452
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCC---ccCCCCCCCcccc
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPV---LSVPWWSSPSFMI 515 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~---~~~~~~~~~~~s~ 515 (627)
.+.++ |||+. -|+...|++||..++++|.||||+||+........+++... +-.|+ ..+|+
T Consensus 340 ~LKEf-rGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~------~d~~vnsv~~~PK-------- 403 (508)
T KOG0275|consen 340 CLKEF-RGHSS-YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG------TDYPVNSVILLPK-------- 403 (508)
T ss_pred hHHHh-cCccc-cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC------CcccceeEEEcCC--------
Confidence 45555 89875 49999999999999999999999999998765544332211 11111 12221
Q ss_pred ccCCCCCCCCCCeeeeeeeeeecCCCCccccccccccccCCccCCCccceeeecccccccCCCcccc-cccCcceEEEEc
Q 046828 516 NQPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDS-KVNDLEHVLVYT 594 (627)
Q Consensus 516 ~q~~~~~~~p~~~~l~~~~~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~-~~~~~~~l~v~~ 594 (627)
.|++-+. .|- .++|--+ -.+|||.-.|..++..+...++. -.++-|-.|-+.
T Consensus 404 -------npeh~iV---------CNr--sntv~im---------n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 404 -------NPEHFIV---------CNR--SNTVYIM---------NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred -------CCceEEE---------EcC--CCeEEEE---------eccceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 1111110 010 0111111 12378888888877665555543 347778889999
Q ss_pred CCCcEEEEEe
Q 046828 595 PSGHVVQYKL 604 (627)
Q Consensus 595 ~~G~l~~y~l 604 (627)
.||-||.+..
T Consensus 457 ED~vlYCF~~ 466 (508)
T KOG0275|consen 457 EDGVLYCFSV 466 (508)
T ss_pred cCcEEEEEEe
Confidence 9999998875
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-12 Score=140.98 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=82.2
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+..+-.|+|+|..+.+.+..|.+|...|++++|||||+.|++|+.|++ ||+||+ |. | +
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDl-pt------~-------------~ 609 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDL-PT------G-------------T 609 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEec-cC------c-------------c
Confidence 3456788999999999999999999999999999999999999999998 899999 43 3 3
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~ 480 (627)
+..... ......++.|||+|.+||++..| .-|.+|.-..
T Consensus 610 lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 610 LIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eeeeEe--cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 333322 23457999999999999999988 6799997543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-12 Score=127.48 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=137.8
Q ss_pred cEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCC-CCCCCCCCCcCccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYP-VPHFGGQGTSGVNIGY 254 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p-~~~~~~~g~~~~~~~~ 254 (627)
.++.+|-...|+.+.++..+ ..|+++++.. +.|+.+.++ .+++||..+++.+.++.... .. .
T Consensus 32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-------------~ 98 (327)
T KOG0643|consen 32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-------------R 98 (327)
T ss_pred CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-------------E
Confidence 44778988899999999955 5999988875 778887766 69999999999999987631 11 1
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
--|.++...+.+..++
T Consensus 99 ~~F~~~gn~~l~~tD~---------------------------------------------------------------- 114 (327)
T KOG0643|consen 99 VDFSFGGNLILASTDK---------------------------------------------------------------- 114 (327)
T ss_pred EeeccCCcEEEEEehh----------------------------------------------------------------
Confidence 1244444444444321
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC-------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV-------SRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~-------s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG 407 (627)
..++.+.|.++|+. +.+++..+..+.+.|...-|+|-|+.|+++.++|
T Consensus 115 -------------------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 115 -------------------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG 169 (327)
T ss_pred -------------------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC
Confidence 01244566777766 4567888888899999999999999999999999
Q ss_pred CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeee
Q 046828 408 NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 408 t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~ 486 (627)
. |++||+. +|. .+.+-.+-|. ..|.+|.||+|..+++++|.|.|.++||+....-+.+
T Consensus 170 ~-is~~da~-------~g~------------~~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 170 S-ISIYDAR-------TGK------------ELVDSDEEHS-SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred c-EEEEEcc-------cCc------------eeeechhhhc-cccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 8 8999996 342 3333333343 4699999999999999999999999999987655443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-13 Score=144.89 Aligned_cols=213 Identities=18% Similarity=0.268 Sum_probs=146.1
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC-----cEEEEEeCCe-EEEEeCC-CCceeEEEEcCCCCCCCCCCCcCcc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP-----RIVAVGLAAQ-IYCFDAL-TLESKFSVLTYPVPHFGGQGTSGVN 251 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~-----~~LaV~~~~~-I~i~D~~-t~e~~~tl~~~p~~~~~~~g~~~~~ 251 (627)
+++++|||..-++...++ +.++|.++.++. ++||++..++ |||||+. ....++++.+|.... .
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI------T--- 551 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI------T--- 551 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce------e---
Confidence 679999999999998888 678999999984 7889988775 9999975 455677888875430 0
Q ss_pred cccceeeEcC---ceEEEcCCCCCcCC---C----CccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCC
Q 046828 252 IGYGPMAVGP---RWLAYASNNPLLPN---T----GRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGD 321 (627)
Q Consensus 252 ~~~~~iAl~~---r~LAy~~~~~~v~~---~----gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~ 321 (627)
.--|+..+ +.|..+.+. .+-+ + |++.+ ..+..+.+ ..+.|
T Consensus 552 --svKFa~~gln~~MiscGADk-simFr~~qk~~~g~~f~-------------------------r~t~t~~k--tTlYD 601 (1080)
T KOG1408|consen 552 --SVKFACNGLNRKMISCGADK-SIMFRVNQKASSGRLFP-------------------------RHTQTLSK--TTLYD 601 (1080)
T ss_pred --EEEEeecCCceEEEeccCch-hhheehhccccCceecc-------------------------cccccccc--ceEEE
Confidence 11133332 445544433 2111 0 11100 00111111 11222
Q ss_pred cceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc---CCCCeEEEEECCCCC
Q 046828 322 MGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA---HTSPISALCFDRSGT 398 (627)
Q Consensus 322 ~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a---H~~~Is~laFspdG~ 398 (627)
|.. ++.|+. ...+.+|..|+|||+++++++..|++ |.+..-.|..+|+|-
T Consensus 602 m~V---------------------dp~~k~------v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi 654 (1080)
T KOG1408|consen 602 MAV---------------------DPTSKL------VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI 654 (1080)
T ss_pred eee---------------------CCCcce------EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCcc
Confidence 221 112221 12457899999999999999999985 556688899999999
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 399 lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+|||...|.+ +-+||.- +|. ++.+. .||..+ |+.+.|++|.+.|++++.||.|.||.+
T Consensus 655 Y~atScsdkt-l~~~Df~-------sgE------------cvA~m-~GHsE~-VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 655 YLATSCSDKT-LCFVDFV-------SGE------------CVAQM-TGHSEA-VTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred EEEEeecCCc-eEEEEec-------cch------------hhhhh-cCcchh-eeeeeecccchhheeecCCceEEEEEC
Confidence 9999999987 7999985 342 33333 577654 999999999999999999999999998
Q ss_pred CC
Q 046828 479 TP 480 (627)
Q Consensus 479 ~~ 480 (627)
..
T Consensus 713 p~ 714 (1080)
T KOG1408|consen 713 PL 714 (1080)
T ss_pred ch
Confidence 65
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-11 Score=124.73 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=77.6
Q ss_pred CCeEEEEECCCC----eEEEEeccCCCCeEEEEECCC----CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 364 AGMVVVKDIVSR----SVISQFRAHTSPISALCFDRS----GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 364 dG~V~IwD~~s~----~~l~~~~aH~~~Is~laFspd----G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
-+.+.||..... ..+..+..|+.||..|+|.|+ -.+||+|+.|| |+||.+.+....-.......+.....
T Consensus 198 ~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 198 LNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred ccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccc
Confidence 346677765433 357778899999999999997 35899999999 79999974210000000000111111
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
...++.....+| +..|+.+.|+--|..|+++++||+|++|..+-.
T Consensus 276 l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 276 LPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred cceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 223334333454 457999999999999999999999999987643
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=140.96 Aligned_cols=224 Identities=17% Similarity=0.187 Sum_probs=155.9
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeec---CCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeec
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRR---DDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHV 157 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~---dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~ 157 (627)
..+...|.|.-+++|++...+ .|+.+.. .|++.-+.+.+.- +-.|| .
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~------------~~~iA--a-------------- 237 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDN------------KHVIA--A-------------- 237 (459)
T ss_pred chhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCC------------ceEEe--e--------------
Confidence 578889999999999999766 5555544 3445444443211 11222 1
Q ss_pred cCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEE
Q 046828 158 GRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFS 233 (627)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~t 233 (627)
..++.+++|++...+..++|..++ .|.++.|.. ..++.+..+ +|++||+....+..+
T Consensus 238 -------------------s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 238 -------------------SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred -------------------cCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 124679999999999999999655 999999975 225555544 799999998666544
Q ss_pred EEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 234 VLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 234 l~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+. | +.+ .+.|.++ ..
T Consensus 299 ~l----~--------~S~--cnDI~~~-------~~-------------------------------------------- 313 (459)
T KOG0288|consen 299 VL----P--------GSQ--CNDIVCS-------IS-------------------------------------------- 313 (459)
T ss_pred cc----c--------ccc--ccceEec-------ce--------------------------------------------
Confidence 32 1 000 1112211 00
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
.+ .++..|+.|+.||+.+...+.....|. .|++|..
T Consensus 314 ------------~~-------------------------------~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~l 349 (459)
T KOG0288|consen 314 ------------DV-------------------------------ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDL 349 (459)
T ss_pred ------------ee-------------------------------eecccccceEEEeccCCceeeEeecCc-ceeeEee
Confidence 00 124578899999999999998888876 8999999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC-CcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM-TSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~-t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
+++|..|.+.+.|-+ +.++|+.... ..+.+.- .|. +...+..+.||||+.|+|+||.||.
T Consensus 350 s~~g~~lLsssRDdt-l~viDlRt~e-----------------I~~~~sA-~g~k~asDwtrvvfSpd~~YvaAGS~dgs 410 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDT-LKVIDLRTKE-----------------IRQTFSA-EGFKCASDWTRVVFSPDGSYVAAGSADGS 410 (459)
T ss_pred ccCCeEEeeecCCCc-eeeeeccccc-----------------EEEEeec-cccccccccceeEECCCCceeeeccCCCc
Confidence 999999999999987 7999985110 1233322 122 2234889999999999999999999
Q ss_pred EEEEEcCCC
Q 046828 473 CHIFVLTPF 481 (627)
Q Consensus 473 vhIw~i~~~ 481 (627)
|+||++...
T Consensus 411 v~iW~v~tg 419 (459)
T KOG0288|consen 411 VYIWSVFTG 419 (459)
T ss_pred EEEEEccCc
Confidence 999998753
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9e-13 Score=144.41 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=89.4
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+++..+.+++||.++.+.+..+++|+..|.+|-.++||+.+++||.||+ ||+||+... ++
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQ-------------------rC 247 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQ-------------------RC 247 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeecccc-------------------ce
Confidence 4677899999999999999999999999999999999999999999998 899998511 25
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeec
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVL 487 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~ 487 (627)
+..+ .-|+.. |+++.-+|+=+.+.+|+.||.|..=++..+.....+
T Consensus 248 l~T~-~vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 248 LATY-IVHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred eeeE-EeccCc-eEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 5554 334443 999999999999999999999999898876544433
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-14 Score=153.58 Aligned_cols=213 Identities=13% Similarity=0.230 Sum_probs=157.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+.++.+|.+.-+-+|.+....... -+-.|++++.++.+.+.- -||+. |
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~~i~-S~~~hespIeSl~f~~~E-------------~Llaa---------g--------- 88 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPNAIT-SLTGHESPIESLTFDTSE-------------RLLAA---------G--------- 88 (825)
T ss_pred eeeccCCCceeeccccccCCchhh-eeeccCCcceeeecCcch-------------hhhcc---------c---------
Confidence 556667777778899988765322 255799999999986532 24331 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
. ..++|+||||+.++.+++|. +...+.+|.|+| .+.|.+. +.-+.+||.+..-+.++..+
T Consensus 89 ------s----------asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 89 ------S----------ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred ------c----------cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence 0 23789999999999999998 456999999998 5667664 55699999998778888877
Q ss_pred CCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
|+-. +..+.|.| ||+|.
T Consensus 153 ~~~v-------------v~~l~lsP~Gr~v~~------------------------------------------------ 171 (825)
T KOG0267|consen 153 HTRV-------------VDVLRLSPDGRWVAS------------------------------------------------ 171 (825)
T ss_pred Ccce-------------eEEEeecCCCceeec------------------------------------------------
Confidence 6432 33333332 34332
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEEC
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFD 394 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFs 394 (627)
+.+|.+|+|||+..++.+..|+.|...|.++.|+
T Consensus 172 ----------------------------------------------g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 172 ----------------------------------------------GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred ----------------------------------------------cCCcceeeeecccccccccccccccccccccccC
Confidence 2357899999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|..-+|+++|.|++ +++||++.. ..+-.. +.....|++++|+||++.++++-..
T Consensus 206 p~e~Lla~Gs~d~t-v~f~dletf-------------------e~I~s~--~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRT-VRFWDLETF-------------------EVISSG--KPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred chhhhhccCCCCce-eeeecccee-------------------EEeecc--CCccCCceeeeecCCceeeecCchh
Confidence 99999999999998 799998611 111111 1123459999999999998887543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=156.49 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=123.3
Q ss_pred CCCeEEEEECCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 363 IAGMVVVKDIVS------------RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 363 ~dG~V~IwD~~s------------~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
.||.++||.... .+.+++...|.+.|+|+.|+|||++||+||+|+. |-||+-.+ .. .+..+.+
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~-v~iW~~~~-~~---~~~~fgs 109 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL-VMIWERAE-IG---SGTVFGS 109 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce-EEEeeecc-cC---Ccccccc
Confidence 688888998643 3568889999999999999999999999999975 89999753 11 1111111
Q ss_pred --cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCC
Q 046828 431 --YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWW 508 (627)
Q Consensus 431 --~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~ 508 (627)
+....+.++.+...|||+. .|.+++||||+.+||++|.|++|+||+...|+....++.|.+.|+|..++|..++.+.
T Consensus 110 ~g~~~~vE~wk~~~~l~~H~~-DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~AS 188 (942)
T KOG0973|consen 110 TGGAKNVESWKVVSILRGHDS-DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFAS 188 (942)
T ss_pred cccccccceeeEEEEEecCCC-ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeee
Confidence 2334556777778899874 6999999999999999999999999999999888899999999999999999888777
Q ss_pred CCCccccccCC
Q 046828 509 SSPSFMINQPS 519 (627)
Q Consensus 509 ~~~~~s~~q~~ 519 (627)
.++++++..||
T Consensus 189 qsdDrtikvwr 199 (942)
T KOG0973|consen 189 QSDDRTLKVWR 199 (942)
T ss_pred ecCCceEEEEE
Confidence 77777777666
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-12 Score=128.71 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=63.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCC------CCCC---------Cc----c-ccCC---
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKG------RSGS---------AS----Q-TYDW--- 433 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~------~~g~---------~~----~-~~~~--- 433 (627)
.+..+++|.+.|.++||||+.+.++|+|.||+ +||||+.-..+.+ ..|. +. + +++.
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred hhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence 35678899999999999999999999999998 8999986322211 0010 00 0 0000
Q ss_pred -CCceeEEEEEeecCC--------cCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 434 -TSSHVHLYKLHRGMT--------SAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 434 -~~~~~~l~~l~rG~t--------~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
..+..+++.-++|.. ...|.+|+|++||+++|+++++ -++|+.
T Consensus 349 s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 349 SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 001123444444432 2348889999999998888654 556665
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=136.11 Aligned_cols=106 Identities=14% Similarity=0.252 Sum_probs=88.4
Q ss_pred CCCCCCeEEEEECC--CCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 360 DTDIAGMVVVKDIV--SRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 360 ~~~~dG~V~IwD~~--s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+.+.|+.+.|||++ +.++....++|..+|.|++|+| ++.+|||||.|++ |++||++ .-.
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlR-nL~---------------- 306 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLR-NLN---------------- 306 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeech-hcc----------------
Confidence 45689999999999 5677788899999999999999 6788999999999 7999996 210
Q ss_pred eeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCeee
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~~~ 486 (627)
..++.+ .||.. .|..|.||| ....||+++.|+.++|||+..-++...
T Consensus 307 -~~lh~~-e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 307 -KPLHTF-EGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred -cCceec-cCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 256666 56654 599999999 567899999999999999998877654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=139.51 Aligned_cols=239 Identities=13% Similarity=0.192 Sum_probs=162.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|.+.-.-++||. .+.-+++.|.++-+++|+.....+--|.+-.+.-.|..+.... ..+
T Consensus 11 aht~G~t~i~~d~------~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---------------~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDP------DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---------------NHF 69 (933)
T ss_pred hccCceEEEEEcC------CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---------------cce
Confidence 3444445566652 2357888999999999999875332333333333444433321 222
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE-ecCCeEEEEEec--CcEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL-RFRSTVYMVRCS--PRIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL-~f~s~V~sV~~s--~~~LaV~~ 216 (627)
++.+ .+++|.+|-.-.++.=.-| +|.-++..++++ +..+|.|.
T Consensus 70 ~~~s----------------------------------~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaags 115 (933)
T KOG1274|consen 70 LTGS----------------------------------EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGS 115 (933)
T ss_pred EEee----------------------------------ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeec
Confidence 2211 2478999988877653333 255556666665 57888887
Q ss_pred CC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 217 AA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 217 ~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
++ .|+|-+..+....+.+++|..| +-.+.+.| .+||..
T Consensus 116 dD~~vK~~~~~D~s~~~~lrgh~ap-------------Vl~l~~~p~~~fLAvs-------------------------- 156 (933)
T KOG1274|consen 116 DDTAVKLLNLDDSSQEKVLRGHDAP-------------VLQLSYDPKGNFLAVS-------------------------- 156 (933)
T ss_pred CceeEEEEeccccchheeecccCCc-------------eeeeeEcCCCCEEEEE--------------------------
Confidence 76 6999999998888889888665 22244433 233332
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
..||.|+|||++
T Consensus 157 --------------------------------------------------------------------s~dG~v~iw~~~ 168 (933)
T KOG1274|consen 157 --------------------------------------------------------------------SCDGKVQIWDLQ 168 (933)
T ss_pred --------------------------------------------------------------------ecCceEEEEEcc
Confidence 368999999999
Q ss_pred CCeEEEEeccC--------CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 374 SRSVISQFRAH--------TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 374 s~~~l~~~~aH--------~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
++....++..- ...+..++|+|+|..||....|+. |.+|+.. .+ .++++|+.
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~-------~w------------e~~f~Lr~ 228 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRK-------GW------------ELQFKLRD 228 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccC-------Cc------------eeheeecc
Confidence 88665554431 456788999999777777777877 7999975 23 37788865
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
-+....+.++.|||.|+|||+++.||-|-||+++.
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 55555699999999999999999999999999983
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-10 Score=114.53 Aligned_cols=252 Identities=15% Similarity=0.167 Sum_probs=169.6
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEe-ccCcEEEEecCCCC----CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLG-YSNGFQVLDVEDAT----NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~G-y~~G~qVWdv~~~~----~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
+|..|+...|..+ ..++..| -++.+++.-.+... .-.--++.|||.||-+.++-.|.. .
T Consensus 88 hkgsiyc~~ws~~-------geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s---------~ 151 (350)
T KOG0641|consen 88 HKGSIYCTAWSPC-------GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES---------G 151 (350)
T ss_pred cCccEEEEEecCc-------cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCc---------C
Confidence 4667777888654 3345544 46778887655321 111235789999999999866632 2
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEE-EecCcEEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMV-RCSPRIVA 213 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV-~~s~~~La 213 (627)
..+|+. .| . -++.|-+-|..+|+..+.+..+ ..|.++ .+|.-+++
T Consensus 152 ~~il~s--------~g---------------a----------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~ 198 (350)
T KOG0641|consen 152 GAILAS--------AG---------------A----------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFA 198 (350)
T ss_pred ceEEEe--------cC---------------C----------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEE
Confidence 234432 11 0 1488889999999999999855 477774 56778888
Q ss_pred EEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 214 VGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 214 V~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
++..+ +|+.||++-..++.++.+.-. +-|+.... +..+++.| |+||
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~----~~glessa--vaav~vdpsgrll~------------------------- 247 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFH----DGGLESSA--VAAVAVDPSGRLLA------------------------- 247 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCccc----CCCcccce--eEEEEECCCcceee-------------------------
Confidence 88655 699999987777766643111 01111100 22233322 2222
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
++..|....+|
T Consensus 248 ---------------------------------------------------------------------sg~~dssc~ly 258 (350)
T KOG0641|consen 248 ---------------------------------------------------------------------SGHADSSCMLY 258 (350)
T ss_pred ---------------------------------------------------------------------eccCCCceEEE
Confidence 23456778999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
|+..++.+..|.+|+..|.|+.|+|...+|.|+|-|-. |++=|+. |. +.. .+-..--+.+..
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlq--------gd------la~---el~~~vv~ehkd 320 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQ--------GD------LAH---ELPIMVVAEHKD 320 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecc--------cc------hhh---cCceEEEEeccC
Confidence 99999999999999999999999999999999999976 8999885 21 111 111111122334
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
++..+.|.|..--++++|.|.|+.+|.++
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 56778999999899999999999999886
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=129.47 Aligned_cols=216 Identities=16% Similarity=0.124 Sum_probs=142.4
Q ss_pred CCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCe-EEEEeCCCCce-eEEEEcCCCCCCCCCCCcCc
Q 046828 175 VAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQ-IYCFDALTLES-KFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 175 ~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~-I~i~D~~t~e~-~~tl~~~p~~~~~~~g~~~~ 250 (627)
++..+-+-++||.-||.++|+++++.-|.+++|++ +.|+.|..++ ++|||++..+- ...+.+|+... -
T Consensus 76 saaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I------r-- 147 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI------R-- 147 (334)
T ss_pred hhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc------e--
Confidence 34557889999999999999999999999999997 5666665554 78999887553 23344444210 0
Q ss_pred ccccceeeEc-CceEEEcCCCCCcCCCCccC---CCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 251 NIGYGPMAVG-PRWLAYASNNPLLPNTGRLS---PQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 251 ~~~~~~iAl~-~r~LAy~~~~~~v~~~gr~~---~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
.-.+..+ ...|..+. +..+++|.+.. .|++.-+
T Consensus 148 ---~v~wc~eD~~iLSSad-d~tVRLWD~rTgt~v~sL~~~--------------------------------------- 184 (334)
T KOG0278|consen 148 ---TVLWCHEDKCILSSAD-DKTVRLWDHRTGTEVQSLEFN--------------------------------------- 184 (334)
T ss_pred ---eEEEeccCceEEeecc-CCceEEEEeccCcEEEEEecC---------------------------------------
Confidence 0011111 13444453 34555554431 1111000
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d 406 (627)
+++.+-.-...|++. .....+.|..||..+...++.++.. ..|.+.+++|+-..++.+.+|
T Consensus 185 --------------s~VtSlEvs~dG~il----Tia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged 245 (334)
T KOG0278|consen 185 --------------SPVTSLEVSQDGRIL----TIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGED 245 (334)
T ss_pred --------------CCCcceeeccCCCEE----EEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcc
Confidence 000000000012222 1235678999999999999888863 468899999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+. ++.||.. +|. .+-....||.. .|.++.|||||...|++|.||||+||...+.
T Consensus 246 ~~-~~kfDy~-------Tge------------Ei~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 246 FK-VYKFDYN-------TGE------------EIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eE-EEEEecc-------CCc------------eeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 97 6889976 331 23223467654 5999999999999999999999999999764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=139.83 Aligned_cols=184 Identities=18% Similarity=0.193 Sum_probs=126.4
Q ss_pred CCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCC
Q 046828 171 QPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQG 246 (627)
Q Consensus 171 ~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g 246 (627)
+..-+..+++|||||++.+.++++++.+..-|.+|+|+| +++++| +|++|+||++..-+..+-- ....
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~---Dl~~----- 452 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN---DLRD----- 452 (712)
T ss_pred CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh---hhhh-----
Confidence 334457789999999999999999999999999999998 677766 7899999999875533211 1110
Q ss_pred CcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 247 TSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 247 ~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
+ +. -+.|.++
T Consensus 453 l------IT-------Avcy~Pd--------------------------------------------------------- 462 (712)
T KOG0283|consen 453 L------IT-------AVCYSPD--------------------------------------------------------- 462 (712)
T ss_pred h------he-------eEEeccC---------------------------------------------------------
Confidence 0 11 1233332
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec--cC------CCCeEEEEECCCCC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR--AH------TSPISALCFDRSGT 398 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~--aH------~~~Is~laFspdG~ 398 (627)
|. +.+ .|..+|.+++|++...+.+..+. -| ...|+.+.|.|.-.
T Consensus 463 -----------Gk------------~av-----IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 463 -----------GK------------GAV-----IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred -----------Cc------------eEE-----EEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence 11 000 24567899999998876655443 22 12699999997544
Q ss_pred --EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc-EEEEEEccCCCEEEEEeCCCeEEE
Q 046828 399 --LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV-IQDICFSHYSQWIAIVSSRGTCHI 475 (627)
Q Consensus 399 --lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~-I~sIaFSpDg~~Las~S~dgTvhI 475 (627)
+|+| |.|-. |||||.... ..+.+| .|..+.. -..-.|+.||++|+++++|.-|+|
T Consensus 515 ~~vLVT-SnDSr-IRI~d~~~~-------------------~lv~Kf-KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 515 DEVLVT-SNDSR-IRIYDGRDK-------------------DLVHKF-KGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred CeEEEe-cCCCc-eEEEeccch-------------------hhhhhh-cccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 5555 66666 899998411 123333 4544433 455689999999999999999999
Q ss_pred EEcCCCC
Q 046828 476 FVLTPFG 482 (627)
Q Consensus 476 w~i~~~g 482 (627)
|++..+.
T Consensus 573 W~~~~~~ 579 (712)
T KOG0283|consen 573 WKNDSFN 579 (712)
T ss_pred EeCCCCc
Confidence 9987654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=142.50 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=102.7
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
...|.+.|+|+.+...+-+++||...|..|+.+||++.++|||.|.+ |++||..-.... .|+ ..+..
T Consensus 431 ~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~l~~~~--~gt----------~~k~l 497 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFKLVVSV--PGT----------QKKVL 497 (888)
T ss_pred ccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEEEEecc--Ccc----------cceee
Confidence 46789999999999999999999999999999999999999999977 899997522111 111 11212
Q ss_pred EEeec---CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCcccccc
Q 046828 442 KLHRG---MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQ 517 (627)
Q Consensus 442 ~l~rG---~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q 517 (627)
.+..- .-...|.++++|||+++||++=.|.|||||-++...-..++.+|.-.|.....+|-+++--+-+-+.+++.
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKi 576 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKI 576 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEE
Confidence 22110 01235999999999999999999999999999998888888888654443333443333333333334433
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=143.76 Aligned_cols=116 Identities=15% Similarity=0.205 Sum_probs=88.6
Q ss_pred CCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+.+.|.+++||++.. +....|.||.+||.|+.|+|++.+||||+.|+. |+|||.. . +.. ..
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t-~------~~~----------~~ 256 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMT-D------SRA----------KP 256 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEecc-C------CCc----------cc
Confidence 457899999999864 567789999999999999999999999999998 8999985 1 110 13
Q ss_pred EEEEeecCCcCcEEEEEEccCCCE-EEEEeC--CCeEEEEEcC-CCCCeeecccccccccCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQW-IAIVSS--RGTCHIFVLT-PFGGETVLQIQNSHVDRP 497 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~-Las~S~--dgTvhIw~i~-~~gg~~~~~~h~s~v~~~ 497 (627)
+... +|.+.|..+.|-|+-++ ||+++. |-.||||++. ||=....+..|...+.+.
T Consensus 257 ~~tI---nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 257 KHTI---NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred eeEE---eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 3333 35578999999997765 444443 6689999996 555666778887666554
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-12 Score=124.22 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=96.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCC-------CCCCCc----
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKG-------RSGSAS---- 428 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~-------~~g~~~---- 428 (627)
+++.|..|.+||+.+++++..|++|...|++++|+.+...+++||.|.+ +|+||-....... ..|-..
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s-~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS-VRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccce-eEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 4567899999999999999999999999999999999999999999987 8999975211000 000000
Q ss_pred ----cccCCCCceeEEEEEeecCCc-----CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 429 ----QTYDWTSSHVHLYKLHRGMTS-----AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 429 ----~~~~~~~~~~~l~~l~rG~t~-----a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
-.+.... ..+.|.+|.|.-. ..|++++||+|++.+.+++.++|+|+.|-++-.-.....+|.
T Consensus 155 ~heIvaGS~DG-tvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk 225 (307)
T KOG0316|consen 155 EHEIVAGSVDG-TVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK 225 (307)
T ss_pred ccEEEeeccCC-cEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc
Confidence 0111112 2578888877532 359999999999999999999999999976544444444553
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.2e-13 Score=145.13 Aligned_cols=190 Identities=16% Similarity=0.234 Sum_probs=140.9
Q ss_pred CcEEEEEECCCCc------eEEEEecCC-eEEEEEec--CcEEEEEe-CCeEEEEeCCCC--ceeEEEEcCCCCCCCCCC
Q 046828 179 PTAVRFYSLRSHN------YVHVLRFRS-TVYMVRCS--PRIVAVGL-AAQIYCFDALTL--ESKFSVLTYPVPHFGGQG 246 (627)
Q Consensus 179 ~~tV~lwdl~t~~------~V~tL~f~s-~V~sV~~s--~~~LaV~~-~~~I~i~D~~t~--e~~~tl~~~p~~~~~~~g 246 (627)
++.|++|+..... ++.+++.++ +|.++... .+.|+++. +.+|++|++... -++.+|.+|..-
T Consensus 46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY------ 119 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY------ 119 (735)
T ss_pred CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch------
Confidence 4789999986543 477888665 89887764 35666664 568999999876 355666666431
Q ss_pred CcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 247 TSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 247 ~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
+ ..|||+..... +
T Consensus 120 ----------V----kcla~~ak~~~---------------------------------------l-------------- 132 (735)
T KOG0308|consen 120 ----------V----KCLAYIAKNNE---------------------------------------L-------------- 132 (735)
T ss_pred ----------h----eeeeecccCce---------------------------------------e--------------
Confidence 1 34677432100 0
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe--E--------EEEec-cCCCCeEEEEECC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS--V--------ISQFR-AHTSPISALCFDR 395 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~--~--------l~~~~-aH~~~Is~laFsp 395 (627)
+ ++++-|+.|.|||+.++. . ...+. +|..+|++|+.++
T Consensus 133 ---------------------------v----aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 133 ---------------------------V----ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred ---------------------------E----EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 0 145689999999999772 2 23333 7888999999999
Q ss_pred CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEE
Q 046828 396 SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHI 475 (627)
Q Consensus 396 dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhI 475 (627)
.|++|+.|+.++- +|+||-. ++ .++.+| ||||. .|..|-.++||+.++++|+||||+|
T Consensus 182 t~t~ivsGgtek~-lr~wDpr-------t~------------~kimkL-rGHTd-NVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 182 TGTIIVSGGTEKD-LRLWDPR-------TC------------KKIMKL-RGHTD-NVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred cceEEEecCcccc-eEEeccc-------cc------------cceeee-ecccc-ceEEEEEcCCCCeEeecCCCceEEe
Confidence 9999999999986 8999964 22 377888 49985 5999999999999999999999999
Q ss_pred EEcCCCCCeeecccccccc
Q 046828 476 FVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 476 w~i~~~gg~~~~~~h~s~v 494 (627)
|++.......++..|...|
T Consensus 240 WdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 240 WDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred eeccccceeeeEEeccCce
Confidence 9998887777777775543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-11 Score=120.33 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=122.4
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEE-EEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIV-AVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~L-aV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+++|++||+.+++.++++.....+..+.+++ +.| +++. ++.|++||+.+++....+..+..
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--------------- 74 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD--------------- 74 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC---------------
Confidence 4789999999999999998776678889986 455 4443 56899999999887655533211
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
++.+++.++... + |
T Consensus 75 ------~~~~~~~~~g~~------------------------------------------------------l--~---- 88 (300)
T TIGR03866 75 ------PELFALHPNGKI------------------------------------------------------L--Y---- 88 (300)
T ss_pred ------ccEEEECCCCCE------------------------------------------------------E--E----
Confidence 123343332100 0 0
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
.....++.|++||+.+.+.+..+..+ ..+..++|+|+|.+|++++.++..+.+||
T Consensus 89 ------------------------~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 89 ------------------------IANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred ------------------------EEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 01235679999999998888888643 34688999999999999998877678888
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPF 481 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~ 481 (627)
.. ++. .+..+..+ ..+..++|++|+++|++++ .+++|++|++...
T Consensus 144 ~~-------~~~------------~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 144 TK-------TYE------------IVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred CC-------CCe------------EEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 74 221 22222222 2357899999999997655 5999999999754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=117.78 Aligned_cols=277 Identities=14% Similarity=0.172 Sum_probs=170.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEE-EEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVL-LLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl-~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
...|.|.-..|-.. ...++ ....|+.+++|++++.+. +-...-.|+|||=.+.+.-. ..
T Consensus 25 pP~DsIS~l~FSP~------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-------------gs 85 (347)
T KOG0647|consen 25 PPEDSISALAFSPQ------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-------------GS 85 (347)
T ss_pred CcccchheeEeccc------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-------------Cc
Confidence 35677888888541 13344 566799999999998641 12223345565544444321 12
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC----cEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP----RIVA 213 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~----~~La 213 (627)
.+++.+ .++.+++|||.+++....-.+..+|..++|=+ ..|+
T Consensus 86 kVf~g~----------------------------------~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~ 131 (347)
T KOG0647|consen 86 KVFSGG----------------------------------CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLV 131 (347)
T ss_pred eEEeec----------------------------------cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeE
Confidence 332211 24679999999997766666788999999854 5678
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
.|. +.+|+.||.+.-..+.++.- |+ | .|+
T Consensus 132 TGSWDKTlKfWD~R~~~pv~t~~L---Pe--------------------R--vYa------------------------- 161 (347)
T KOG0647|consen 132 TGSWDKTLKFWDTRSSNPVATLQL---PE--------------------R--VYA------------------------- 161 (347)
T ss_pred ecccccceeecccCCCCeeeeeec---cc--------------------e--eee-------------------------
Confidence 886 55799999997776666532 21 0 111
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
++.-..++. -+..+..|.+|++
T Consensus 162 -------------~Dv~~pm~v---------------------------------------------Vata~r~i~vynL 183 (347)
T KOG0647|consen 162 -------------ADVLYPMAV---------------------------------------------VATAERHIAVYNL 183 (347)
T ss_pred -------------hhccCceeE---------------------------------------------EEecCCcEEEEEc
Confidence 111000100 0123456778888
Q ss_pred CCCeEEEEeccCCCC----eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 373 VSRSVISQFRAHTSP----ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~----Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
++.. ..|+.+.+| +.||+.-+|....|.||.+|. +-|..+.+... ...-.++.+|...
T Consensus 184 ~n~~--te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~---------------~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 184 ENPP--TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNP---------------KDNFTFKCHRSTN 245 (347)
T ss_pred CCCc--chhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCc---------------cCceeEEEeccCC
Confidence 7653 456666665 788998888888899999998 67887763100 1125667777311
Q ss_pred --cC---cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCC-cccc
Q 046828 449 --SA---VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSP-SFMI 515 (627)
Q Consensus 449 --~a---~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~-~~s~ 515 (627)
.. .|.+|+|.|.-..|+++++|||+-.||-+....+.....|......-.+.....+..|... +||-
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSk 318 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSK 318 (347)
T ss_pred CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeeccccc
Confidence 12 2788999999999999999999999998776555444455432222122222344445433 5653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-11 Score=121.21 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=90.9
Q ss_pred EEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC--CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEcc
Q 046828 68 SSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT--NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACD 145 (627)
Q Consensus 68 a~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~--~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d 145 (627)
=+.+.|+++..+++.+|..|.++.+-|||+++.. +..-++..| +.+.-.+.. +..+|+.. -+.|-
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~------~c~v~~~h~--~~Hky~is-----s~~Wy 110 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH------KCIVAKQHE--NGHKYAIS-----SAIWY 110 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe------eeeccccCC--ccceeeee-----eeEEe
Confidence 4556677777788999999999999999999876 333333322 111111110 00111110 01110
Q ss_pred CccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC-----cEEEEEeCC-e
Q 046828 146 EAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-----RIVAVGLAA-Q 219 (627)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-----~~LaV~~~~-~ 219 (627)
|. |. |-.. +...+.+|++||..|-+.+-+++++..||+-++++ -+||+|..+ +
T Consensus 111 ------P~----Dt-GmFt----------ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 111 ------PI----DT-GMFT----------SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred ------ee----cC-ceee----------cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence 00 00 0001 12246899999999999999999999999988876 477888766 8
Q ss_pred EEEEeCCCCceeEEEEcCCC
Q 046828 220 IYCFDALTLESKFSVLTYPV 239 (627)
Q Consensus 220 I~i~D~~t~e~~~tl~~~p~ 239 (627)
|++-|+.+|..-+++.+|..
T Consensus 170 VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred EEEEeccCCcceeeeccccC
Confidence 99999999999999998854
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=132.77 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=81.3
Q ss_pred CCCCCCeEEEEECCCCe---EEEEeccCCC--CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 360 DTDIAGMVVVKDIVSRS---VISQFRAHTS--PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~---~l~~~~aH~~--~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
.+..||.|.+||..+.. ..+.-+||.. .|+||+||+||++|++-+.|++ ++|||+....
T Consensus 334 agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~k--------------- 397 (641)
T KOG0772|consen 334 AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQFK--------------- 397 (641)
T ss_pred hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeeccccc---------------
Confidence 35679999999986542 2444569987 8999999999999999999998 7999996211
Q ss_pred CceeEEEEEeecCCc-CcEEEEEEccCCCEEEEEeC------CCeEEEEEcCCCCCeeecccc
Q 046828 435 SSHVHLYKLHRGMTS-AVIQDICFSHYSQWIAIVSS------RGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~-a~I~sIaFSpDg~~Las~S~------dgTvhIw~i~~~gg~~~~~~h 490 (627)
..|... .|..+ -.-.+++||||.+.|++|++ -|++.+|+-..+.....+...
T Consensus 398 ---kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 398 ---KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred ---cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 122221 33322 23578999999999999876 568888888777655544433
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-12 Score=128.10 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=80.8
Q ss_pred CeEEEEECCCCeEEEEe---ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVSRSVISQF---RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~---~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
-++++||+.+.++...- ..|+..|.++.+|+.|++-+|||.||. |+|||=- ++ +++.
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGV-------S~------------rCv~ 297 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGV-------SN------------RCVR 297 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccc-------cH------------HHHH
Confidence 35788888877653322 258899999999999999999999998 8999953 22 3566
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.+.+.|..+.|.+..|+.|++||.+++.|.+|++|.|....
T Consensus 298 t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 66677777889999999999999999999999999998653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-11 Score=135.32 Aligned_cols=99 Identities=15% Similarity=0.348 Sum_probs=84.4
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+++.|.+|++|++...++++.|. |..-|+||+|+| |.+++++||.||. +|||+|. ... +.
T Consensus 385 SSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~-d~~----------------Vv 445 (712)
T KOG0283|consen 385 SSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSIS-DKK----------------VV 445 (712)
T ss_pred eccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecC-cCe----------------eE
Confidence 56889999999999999999997 999999999999 8899999999998 7999994 321 12
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.-++++ .-|+.++|+|||++.++|+.+|.+++|+.....
T Consensus 446 ~W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 446 DWNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred eehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 233332 249999999999999999999999999987544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=133.26 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=159.3
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.+++..|-|..+-||.+.... ..-.|-.|+..|.++...-.+ . +++
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~--------------~--~iS----------------- 117 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAE-PLYTLKGHKSNVCSLSIGEDG--------------T--LIS----------------- 117 (745)
T ss_pred cceEeecccceEEEEecCCCC-chhhhhccccceeeeecCCcC--------------c--eEe-----------------
Confidence 457788888889999998754 456677888988887754221 1 222
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC-cEEEEEeCC-eEEEEeCCCCceeEEEEcC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP-RIVAVGLAA-QIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~-~~LaV~~~~-~I~i~D~~t~e~~~tl~~~ 237 (627)
|+|| +|+++|- -++++.+++ |.+.|++|..-+ ..+++|.++ .|++|.. ++.+.++.+|
T Consensus 118 -----gSWD----------~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gH 178 (745)
T KOG0301|consen 118 -----GSWD----------STAKVWR--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGH 178 (745)
T ss_pred -----cccc----------cceEEec--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccc
Confidence 5676 8899994 567777787 556999988765 666777655 6999987 5567788887
Q ss_pred CCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccee
Q 046828 238 PVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLI 317 (627)
Q Consensus 238 p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~ 317 (627)
..- + |-||.-+..
T Consensus 179 tD~-------------V-------RgL~vl~~~----------------------------------------------- 191 (745)
T KOG0301|consen 179 TDC-------------V-------RGLAVLDDS----------------------------------------------- 191 (745)
T ss_pred hhh-------------e-------eeeEEecCC-----------------------------------------------
Confidence 542 1 445544321
Q ss_pred ecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCC
Q 046828 318 NLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSG 397 (627)
Q Consensus 318 ~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG 397 (627)
+..+++.||.|+.||+ +++.+....+|++-|.+++..+++
T Consensus 192 ---------------------------------------~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 192 ---------------------------------------HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred ---------------------------------------CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCC
Confidence 1124578999999999 788999999999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 398 TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 398 ~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.+++|+++|+| +|||+.. .. ....++ ....|+++.+=++|. |+++++||-|+||.
T Consensus 232 ~~Ivs~gEDrt-lriW~~~-e~------------------~q~I~l----PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 232 GLIVSTGEDRT-LRIWKKD-EC------------------VQVITL----PTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred CeEEEecCCce-EEEeecC-ce------------------EEEEec----CccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 99999999998 7999974 11 123333 112489998888876 56888999999999
Q ss_pred cCCC
Q 046828 478 LTPF 481 (627)
Q Consensus 478 i~~~ 481 (627)
..+.
T Consensus 287 ~~k~ 290 (745)
T KOG0301|consen 287 VDKD 290 (745)
T ss_pred eccc
Confidence 8754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-12 Score=127.20 Aligned_cols=216 Identities=14% Similarity=0.211 Sum_probs=149.3
Q ss_pred CcCCcEEEEEECCCCceEEEEec---------CCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEc-CCCCCC
Q 046828 176 AMSPTAVRFYSLRSHNYVHVLRF---------RSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLT-YPVPHF 242 (627)
Q Consensus 176 ~~~~~tV~lwdl~t~~~V~tL~f---------~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~-~p~~~~ 242 (627)
...++-|.+|+.-+|+.-+.|++ ..+|.+|.|++ .+||+| .+++|++|.+.|+++++.+.. |..
T Consensus 231 gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk--- 307 (508)
T KOG0275|consen 231 GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK--- 307 (508)
T ss_pred ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc---
Confidence 34568899999999998887764 35899999998 688988 477999999999999887753 322
Q ss_pred CCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCc
Q 046828 243 GGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDM 322 (627)
Q Consensus 243 ~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~ 322 (627)
| +..+. |+-+..
T Consensus 308 ---G-------vt~l~-------FSrD~S--------------------------------------------------- 319 (508)
T KOG0275|consen 308 ---G-------VTCLS-------FSRDNS--------------------------------------------------- 319 (508)
T ss_pred ---C-------eeEEE-------EccCcc---------------------------------------------------
Confidence 1 12222 222110
Q ss_pred ceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEE
Q 046828 323 GYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVT 402 (627)
Q Consensus 323 g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaT 402 (627)
+..+++.|-+|+|.-+++++.+..|++|.+-|+...|.+||..+++
T Consensus 320 ----------------------------------qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 320 ----------------------------------QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred ----------------------------------hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 0013467889999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCCCCCC---CCCCC--ccc-cCCCCceeEEEEE-------------------eecCCc-CcEEEEE
Q 046828 403 ASIHGNNINIFRIMPSSSKG---RSGSA--SQT-YDWTSSHVHLYKL-------------------HRGMTS-AVIQDIC 456 (627)
Q Consensus 403 aS~dGt~I~Vwdi~p~~~~~---~~g~~--~~~-~~~~~~~~~l~~l-------------------~rG~t~-a~I~sIa 456 (627)
||.||+ |+||+.+...... +-|+- .-+ ...+....|..-. ..|... ....+.+
T Consensus 366 aSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 366 ASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred ecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEE
Confidence 999999 7999986321110 00000 000 0000001111111 112111 2255678
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRP 497 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~ 497 (627)
.||.|.|+.+.+.|+....|.+...+-...+.-|...+.|.
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl 485 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL 485 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc
Confidence 99999999999999999999998777666777776655554
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-12 Score=143.42 Aligned_cols=176 Identities=15% Similarity=0.243 Sum_probs=134.7
Q ss_pred cEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
.++-||..-.-..+..|.. .++|.+|.|+. ++|+.|. ++.|++||+...+.+++|.+|-.+
T Consensus 50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--------------- 114 (825)
T KOG0267|consen 50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--------------- 114 (825)
T ss_pred eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC---------------
Confidence 6677887776666777774 56999999986 6666665 558999999999989998887543
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
++.+ +|-+. ..|+
T Consensus 115 ~~sv-----~f~P~----------------------------------------------------------~~~~---- 127 (825)
T KOG0267|consen 115 ITSV-----DFHPY----------------------------------------------------------GEFF---- 127 (825)
T ss_pred ccee-----eeccc----------------------------------------------------------eEEe----
Confidence 1111 11110 0111
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
+.++.|+...+||++...+...++.|..-|..++|+|+|++++.+.+|-+ ++|||.
T Consensus 128 -----------------------a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~ 183 (825)
T KOG0267|consen 128 -----------------------ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDL 183 (825)
T ss_pred -----------------------ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce-eeeecc
Confidence 12457888999999998999999999999999999999999999999876 899998
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
. .|. .+.+| .+|. ..|+.+.|.|-.-.|+.||.|+|+++|+++.+.
T Consensus 184 ~-------agk------------~~~ef-~~~e-~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 184 T-------AGK------------LSKEF-KSHE-GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred c-------ccc------------ccccc-cccc-ccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 4 332 23333 3443 469999999999999999999999999999664
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-10 Score=120.95 Aligned_cols=238 Identities=18% Similarity=0.262 Sum_probs=161.5
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
.-.|.|+.|.+. .+.++...-+.-|+||.+....+ ..++-.|+++|+.+..-|+. .+++-
T Consensus 261 ~kki~~v~~~~~------~~~v~~aSad~~i~vws~~~~s~-~~~~~~h~~~V~~ls~h~tg-------------eYlls 320 (506)
T KOG0289|consen 261 TKKITSVKFHKD------LDTVITASADEIIRVWSVPLSSE-PTSSRPHEEPVTGLSLHPTG-------------EYLLS 320 (506)
T ss_pred ceEEEEEEeccc------hhheeecCCcceEEeeccccccC-ccccccccccceeeeeccCC-------------cEEEE
Confidence 345667776542 24567777788899999998764 45666789999999988765 33322
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-C--eEEEEEecCc--EEEEEe
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-S--TVYMVRCSPR--IVAVGL 216 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s--~V~sV~~s~~--~LaV~~ 216 (627)
.. .+++.-|.|.+++..+...... + .+.+.+|.|+ +++.+.
T Consensus 321 As----------------------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 321 AS----------------------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred ec----------------------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 11 2367899999999998777764 3 5788999984 455554
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|+|||+......-.+.+|..| +. -|+|+.
T Consensus 367 ~d~~vkiwdlks~~~~a~Fpght~~-------------vk-------~i~FsE--------------------------- 399 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKFPGHTGP-------------VK-------AISFSE--------------------------- 399 (506)
T ss_pred CCceEEEEEcCCccccccCCCCCCc-------------ee-------EEEecc---------------------------
Confidence 568999999987766555555443 22 233332
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
.|| | + +.+.+|+.|++||++..
T Consensus 400 --------------------------NGY------~----------------------L----at~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 400 --------------------------NGY------W----------------------L----ATAADDGSVKLWDLRKL 421 (506)
T ss_pred --------------------------Cce------E----------------------E----EEEecCCeEEEEEehhh
Confidence 122 1 0 02346778999999998
Q ss_pred eEEEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 376 SVISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 376 ~~l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
+...+|.-. ..+|.++.|+++|++|+.++.+ ++||-.... +. .|. .+.++ .-+ .+....
T Consensus 422 ~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~---l~Vy~~~k~-----~k------~W~----~~~~~-~~~-sg~st~ 481 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD---LQVYICKKK-----TK------SWT----EIKEL-ADH-SGLSTG 481 (506)
T ss_pred cccceeeccccccceeEEEcCCCCeEEeecce---eEEEEEecc-----cc------cce----eeehh-hhc-ccccce
Confidence 877777633 3479999999999999999665 566654311 11 111 12222 111 234688
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEc
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+.|..+.++|+++|.|...+|+.+
T Consensus 482 v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 482 VRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeecccceEEeeccchhheEEeec
Confidence 999999999999999999999876
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-11 Score=134.46 Aligned_cols=129 Identities=21% Similarity=0.347 Sum_probs=109.8
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
++.++|||.++...+++++..+.+..+...+ .++|+++++ .|.++|+.|.+..+.+.+|.+. .+
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr-------------it 580 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR-------------IT 580 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc-------------ee
Confidence 4779999999999999999988888777766 677777766 7999999999988899999875 56
Q ss_pred eeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 256 PMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 256 ~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
.++++| |||+.++
T Consensus 581 d~~FS~DgrWlisas----------------------------------------------------------------- 595 (910)
T KOG1539|consen 581 DMTFSPDGRWLISAS----------------------------------------------------------------- 595 (910)
T ss_pred eeEeCCCCcEEEEee-----------------------------------------------------------------
Confidence 677765 8888764
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIF 413 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vw 413 (627)
.|++|++||+.++.++-.|.- ..|+.+|.|||+|.+|||+..|+.-|.+|
T Consensus 596 -----------------------------mD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 596 -----------------------------MDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred -----------------------------cCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 468899999999988877763 57899999999999999999998889999
Q ss_pred eC
Q 046828 414 RI 415 (627)
Q Consensus 414 di 415 (627)
--
T Consensus 646 sN 647 (910)
T KOG1539|consen 646 SN 647 (910)
T ss_pred Ec
Confidence 64
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-11 Score=117.34 Aligned_cols=263 Identities=13% Similarity=0.183 Sum_probs=170.2
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC--CceEEeeecCCceEEEEEe-eCCCCCCCCCCcCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT--NVSELVSRRDDPVTFLQMQ-PLPAKSDGQEGFRN 134 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~--~~~ells~~dG~V~~v~~l-p~p~~~~~~D~f~~ 134 (627)
+..|+|.|..+-.|. .++++...+.|+.++|+.+.+++ ....-|-.|.|||--+.+. |. |
T Consensus 7 dt~H~D~IHda~lDy------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk---------~-- 69 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDY------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK---------F-- 69 (299)
T ss_pred hhhhhhhhhHhhhhh------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc---------c--
Confidence 345677777776654 24889999999999999999877 3445556789999777664 32 1
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe---cCCeEEEEEecC--
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR---FRSTVYMVRCSP-- 209 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~---f~s~V~sV~~s~-- 209 (627)
..+||.+. .+++|.||--..|+.-+..+ +.+.|.+|++-|
T Consensus 70 -G~iLAScs----------------------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 70 -GTILASCS----------------------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHE 114 (299)
T ss_pred -CcEeeEee----------------------------------cCceEEEEecCCCchhhhhhhhhhcccceeecccccc
Confidence 25666432 45889999988886544333 456999999987
Q ss_pred --cEEEEE-eCCeEEEEeCCCC-cee--EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCC
Q 046828 210 --RIVAVG-LAAQIYCFDALTL-ESK--FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 210 --~~LaV~-~~~~I~i~D~~t~-e~~--~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
-+|+.+ .++.|.|++..+- .-. .....|+. +++.++. ++...
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-------------GvnsVsw-------apa~~------------ 162 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-------------GVNSVSW-------APASA------------ 162 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-------------ccceeee-------cCcCC------------
Confidence 467776 4668888876543 111 11112321 1333332 22100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
| |.++ ++...+.+ -+| .+++.
T Consensus 163 ---~----------g~~~------------------~~~~~~~~------------------------krl----vSgGc 183 (299)
T KOG1332|consen 163 ---P----------GSLV------------------DQGPAAKV------------------------KRL----VSGGC 183 (299)
T ss_pred ---C----------cccc------------------ccCccccc------------------------cee----eccCC
Confidence 0 0000 00000000 012 24678
Q ss_pred CCeEEEEECCCCe--EEEEeccCCCCeEEEEECCCC----CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 364 AGMVVVKDIVSRS--VISQFRAHTSPISALCFDRSG----TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 364 dG~V~IwD~~s~~--~l~~~~aH~~~Is~laFspdG----~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
|..|+||+..+++ .-.+|.+|+.-|..+|+.|.- ..||++|.||+ +.||... .. .+ .|...
T Consensus 184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~-~e----~e------~wk~t- 250 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKD-EE----YE------PWKKT- 250 (299)
T ss_pred ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEec-Cc----cC------ccccc-
Confidence 9999999998863 344599999999999999984 57999999999 5799764 21 11 12111
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.+.+ . +..++.++||..|..||++..|+.|.+|.-+-.|
T Consensus 251 -ll~~----f-~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 251 -LLEE----F-PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred -cccc----C-CcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 1222 2 2359999999999999999999999999876554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=124.64 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=80.9
Q ss_pred CCCCCCeEEEEECCCC---eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 360 DTDIAGMVVVKDIVSR---SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~---~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+++.||.|+|||++++ .++. .++|.+.|+.|.|+..-.+||+|+++|+ ++|||++... .++
T Consensus 275 ScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~----~~~---------- 338 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFK----SGQ---------- 338 (440)
T ss_pred eeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhcc----CCC----------
Confidence 5678999999999988 3344 3899999999999999999999999998 8999997321 121
Q ss_pred eeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~ 480 (627)
.+..+.+ | .+.|++|.|+| +...||+++.|..|-|||+.-
T Consensus 339 --pVA~fk~-H-k~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 --PVATFKY-H-KAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred --cceeEEe-c-cCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 2333322 2 35699999998 667899999999999999964
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=119.91 Aligned_cols=175 Identities=16% Similarity=0.224 Sum_probs=137.0
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
..-.||++.+|+...++. ++..|.++.||. .+||+| ++++|.||+..++.....+.. +..
T Consensus 86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~--------------- 149 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVE--------------- 149 (399)
T ss_pred ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccC---------------
Confidence 568899999999999997 667999999997 788888 688999999999988777641 111
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
-| .||-+-+...+
T Consensus 150 di----eWl~WHp~a~i--------------------------------------------------------------- 162 (399)
T KOG0296|consen 150 DI----EWLKWHPRAHI--------------------------------------------------------------- 162 (399)
T ss_pred ce----EEEEecccccE---------------------------------------------------------------
Confidence 01 36655431100
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
+ ..+..||.|.+|.+.++...+.|.+|..++++=.|.|||++++|+..||+ |++|+.
T Consensus 163 ------------------l----lAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~ 219 (399)
T KOG0296|consen 163 ------------------L----LAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNP 219 (399)
T ss_pred ------------------E----EeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEec
Confidence 0 13578999999999998889999999999999999999999999999998 799998
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+ +|+ .++++. +...-.-.+++++.++..+..++.++.+++-+...
T Consensus 220 k-------tg~------------p~~~~~-~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 220 K-------TGQ------------PLHKIT-QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred C-------CCc------------eeEEec-ccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 6 442 455442 22222367899999999999999999998877654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=130.28 Aligned_cols=107 Identities=18% Similarity=0.311 Sum_probs=82.6
Q ss_pred CCCCCCeEEEEECCCC-eEEEEeccC-----CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 360 DTDIAGMVVVKDIVSR-SVISQFRAH-----TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~-~~l~~~~aH-----~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
.+++||+++|||+.+- +++..|+.- .-+++..+|+|||+++|+|..||. |.+|+.. ...
T Consensus 286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~-~~~------------- 350 (641)
T KOG0772|consen 286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKG-SRT------------- 350 (641)
T ss_pred EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecC-Ccc-------------
Confidence 4679999999999764 445555532 346889999999999999999998 8999973 211
Q ss_pred CCceeEEEEEeecCCcC-cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 434 TSSHVHLYKLHRGMTSA-VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~a-~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
+...+..+..|+.. .|.+|+||+||++|++=+.|+|++||+|..+...
T Consensus 351 ---v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 351 ---VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ---cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 01334444555543 4999999999999999999999999999876543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-10 Score=113.77 Aligned_cols=247 Identities=17% Similarity=0.117 Sum_probs=159.5
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
+...+|.|--+.|+. ....+|+...|+.+++||++... ..+.=.|++|+-.+.+.+.-
T Consensus 9 ~npP~d~IS~v~f~~------~~~~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d~~-------------- 66 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSP------SSSDLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFADES-------------- 66 (323)
T ss_pred CCCChhceeeEEEcC------cCCcEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccCCc--------------
Confidence 345689999999973 22567778889999999999864 33334566776555544310
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAV 214 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV 214 (627)
- ++++ + .++.|+.||+.+++.-.-..+...|.+|..++ .+|+.
T Consensus 67 ~-~~~G-------~--------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsg 112 (323)
T KOG1036|consen 67 T-IVTG-------G--------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISG 112 (323)
T ss_pred e-EEEe-------c--------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEc
Confidence 1 2221 1 24789999999999887778888999999985 45555
Q ss_pred EeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 215 GLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 215 ~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
+-+.+|++||.+.-....++.. +.+ +..+.++..-|.
T Consensus 113 sWD~~ik~wD~R~~~~~~~~d~-~kk-------------Vy~~~v~g~~Lv----------------------------- 149 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVVGTFDQ-GKK-------------VYCMDVSGNRLV----------------------------- 149 (323)
T ss_pred ccCccEEEEecccccccccccc-Cce-------------EEEEeccCCEEE-----------------------------
Confidence 5688999999986222211110 000 112222111111
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
-+..+-.|.+||+.+
T Consensus 150 -----------------------------------------------------------------Vg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 150 -----------------------------------------------------------------VGTSDRKVLIYDLRN 164 (323)
T ss_pred -----------------------------------------------------------------EeecCceEEEEEccc
Confidence 123566899999998
Q ss_pred CeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc---
Q 046828 375 RSVISQFRA--HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS--- 449 (627)
Q Consensus 375 ~~~l~~~~a--H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~--- 449 (627)
.....+.+. -.-.+.||++-|++.=.|.+|.+|++ -|=.+.+.... .+..-.++.+|-...
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV-avE~~d~s~~~-------------~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV-AVEYFDDSEEA-------------QSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceE-EEEccCCchHH-------------hhhceeEEeeecccCCce
Confidence 765444332 23468999999999999999999984 44333322110 001123333332211
Q ss_pred --CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 450 --AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 450 --a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..|.+|+|+|--+.||+++.||-|-+|++....
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 138999999999999999999999999987643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=124.14 Aligned_cols=219 Identities=16% Similarity=0.202 Sum_probs=152.4
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+++-+++.|.++-|||||+++.. ....+..|.|.|..+.|--.+. -| ...
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~gt~------------~l-ys~---------------- 262 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKGTS------------EL-YSA---------------- 262 (479)
T ss_pred CCcEEEecCCCceEEEecCcccc-hhhcccccccceeeeeeecCcc------------ce-eee----------------
Confidence 34777888889999999999855 4556778888888777754432 22 221
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSV 234 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl 234 (627)
..+++|++|++..-.+|.++. +.+.|.+|.... |.+.|+ -|.++.+|++..-. ...+
T Consensus 263 ------------------s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlif 323 (479)
T KOG0299|consen 263 ------------------SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIF 323 (479)
T ss_pred ------------------ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeee
Confidence 134789999999999999986 667999999864 677777 56689999984311 1122
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
.++.. +...+||-.+
T Consensus 324 rg~~~--------------------sidcv~~In~--------------------------------------------- 338 (479)
T KOG0299|consen 324 RGGEG--------------------SIDCVAFIND--------------------------------------------- 338 (479)
T ss_pred eCCCC--------------------CeeeEEEecc---------------------------------------------
Confidence 22100 0122333221
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec-cCC---C----
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR-AHT---S---- 386 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~-aH~---~---- 386 (627)
.|..+++.+|.|.+|++.+++++.+.+ ||. .
T Consensus 339 -----------------------------------------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 339 -----------------------------------------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred -----------------------------------------cceeeccCCceEEEeeecccCceeEeeccccccCCcccc
Confidence 112246789999999999999988876 662 2
Q ss_pred ----CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 387 ----PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 387 ----~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
.|++|+..|...++|++|-+|- ||+|.+.+.. .....++.+. -..-|++|+|+++|+
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~---------------r~i~~l~~ls---~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGL---------------RAINLLYSLS---LVGFVNSLAFSNSGK 438 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCc-eEEEEecCCc---------------cccceeeecc---cccEEEEEEEccCCC
Confidence 6899999999999999999998 7999997321 0112455552 123499999999999
Q ss_pred EEEEEeCCC
Q 046828 463 WIAIVSSRG 471 (627)
Q Consensus 463 ~Las~S~dg 471 (627)
+|.++-.+.
T Consensus 439 ~ivagiGkE 447 (479)
T KOG0299|consen 439 RIVAGIGKE 447 (479)
T ss_pred EEEEecccc
Confidence 888874443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=118.41 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=81.6
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCE-EEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC-ceeEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTL-LVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS-SHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~l-LaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~-~~~~l 440 (627)
.+-.|++.|++++..-+.+.+|...|-++.|+|...+ |||||.||+ ||+|||... +|. +.--|... .....
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-----sgc-f~~lD~hn~k~~p~ 238 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-----SGC-FRVLDQHNTKRPPI 238 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-----cce-eEEeecccCccCcc
Confidence 3457999999999999999999999999999998765 899999998 899999732 121 11001111 10011
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+- +-....+|..+||+.|+++|++.+.|..+++|+...
T Consensus 239 ~~~-n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 239 LKT-NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred ccc-cccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 111 112235699999999999999999999999999764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-11 Score=127.12 Aligned_cols=224 Identities=17% Similarity=0.259 Sum_probs=153.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeee-----cCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceee
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSR-----RDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHV 155 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~-----~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~ 155 (627)
++|++.| .++++|||+...++ +--++. +|.-+|.+.++|+. |.|| |+ |.
T Consensus 432 rhVyTgG-kgcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~pdg------------rtLi--vG-------Ge--- 485 (705)
T KOG0639|consen 432 RHVYTGG-KGCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLLPDG------------RTLI--VG-------GE--- 485 (705)
T ss_pred ceeEecC-CCeEEEeeccCCCC-CCccccccccCcccceeeeEecCCC------------ceEE--ec-------cc---
Confidence 7788777 78999999987653 333332 34556666666543 3443 33 21
Q ss_pred eccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC---eEEEEEecC--cEEEEE-eCCeEEEEeCCCCc
Q 046828 156 HVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS---TVYMVRCSP--RIVAVG-LAAQIYCFDALTLE 229 (627)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e 229 (627)
-.+|.||||.+.+.--..+..+ ..|++++|+ ++...+ .++.|.|||+.+-.
T Consensus 486 -----------------------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 486 -----------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred -----------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 1569999999877654445544 568889998 444444 57789999999988
Q ss_pred eeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 046828 230 SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESS 309 (627)
Q Consensus 230 ~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~ 309 (627)
.++.+.+|+.- ...|.+ .
T Consensus 543 ~VrqfqGhtDG-------------ascIdi-------s------------------------------------------ 560 (705)
T KOG0639|consen 543 LVRQFQGHTDG-------------ASCIDI-------S------------------------------------------ 560 (705)
T ss_pred eeecccCCCCC-------------ceeEEe-------c------------------------------------------
Confidence 88888888752 112322 1
Q ss_pred hhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeE
Q 046828 310 KQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPIS 389 (627)
Q Consensus 310 k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is 389 (627)
+.|++-| .++-|.+||.||+..++++.+.. ..+.|.
T Consensus 561 -----------~dGtklW--------------------------------TGGlDntvRcWDlregrqlqqhd-F~SQIf 596 (705)
T KOG0639|consen 561 -----------KDGTKLW--------------------------------TGGLDNTVRCWDLREGRQLQQHD-FSSQIF 596 (705)
T ss_pred -----------CCCceee--------------------------------cCCCccceeehhhhhhhhhhhhh-hhhhhe
Confidence 1122222 24678999999999887543322 257799
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 390 ALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 390 ~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
+|...|+|..||.+-+.+. +-|-.+. +. ..|+|.. +...|.++.|++.|+|+++.+.
T Consensus 597 SLg~cP~~dWlavGMens~-vevlh~s--------kp------------~kyqlhl--heScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSN-VEVLHTS--------KP------------EKYQLHL--HESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred ecccCCCccceeeecccCc-EEEEecC--------Cc------------cceeecc--cccEEEEEEecccCceeeecCc
Confidence 9999999999999999986 3444331 21 4455532 3345999999999999999999
Q ss_pred CCeEEEEEcCCCCC
Q 046828 470 RGTCHIFVLTPFGG 483 (627)
Q Consensus 470 dgTvhIw~i~~~gg 483 (627)
|.-+-.|.. |||.
T Consensus 654 DnlLnawrt-PyGa 666 (705)
T KOG0639|consen 654 DNLLNAWRT-PYGA 666 (705)
T ss_pred hhhhhhccC-cccc
Confidence 999999986 4553
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-10 Score=116.76 Aligned_cols=219 Identities=16% Similarity=0.171 Sum_probs=142.3
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
++-+...|.|..++|||+....+...|++ |.|.+.++++.+.-. +.-||. +.
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S----------~shLlS-~s---------------- 104 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLS----------KSHLLS-GS---------------- 104 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcc----------hhheee-ec----------------
Confidence 46777888899999999999777555554 799999999875421 113432 11
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC-cE--EEEEeCCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP-RI--VAVGLAAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~-~~--LaV~~~~~I~i~D~~t~e~~~tl~ 235 (627)
.++.|.+|+...=+++++++ +...|..|++.| .. |.|+.+..++.||+-+|+.-+.+.
T Consensus 105 ------------------dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 105 ------------------DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred ------------------CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence 13669999999999999999 455899999987 33 456778889999999998877764
Q ss_pred cCCCCCCCCCCCcCcccccce-eeE--cCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGP-MAV--GPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQL 312 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~-iAl--~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l 312 (627)
-...++... .++ -+. |.+ ..+..+|-.... ++..+...+.
T Consensus 167 L~~~at~v~-w~~-----~Gd~F~v~~~~~i~i~q~d~A-------------------------------~v~~~i~~~~ 209 (362)
T KOG0294|consen 167 LKNKATLVS-WSP-----QGDHFVVSGRNKIDIYQLDNA-------------------------------SVFREIENPK 209 (362)
T ss_pred cCCcceeeE-EcC-----CCCEEEEEeccEEEEEecccH-------------------------------hHhhhhhccc
Confidence 322221000 000 000 111 112333322111 1111111110
Q ss_pred hcceeecCCcceeEEeeeeccccCCCCCCCccCCCcccc-CcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEE
Q 046828 313 AAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKA-GRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISAL 391 (627)
Q Consensus 313 ~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~-g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~l 391 (627)
+.+.-.| -. +.+ ..+..++.|++||..+..++..|.||...|-.+
T Consensus 210 ------------r~l~~~~------------------l~~~~L----~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 210 ------------RILCATF------------------LDGSEL----LVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred ------------cceeeee------------------cCCceE----EEecCCceEEEeccCCCccceeeecchhheeee
Confidence 0000000 00 111 135678999999999999999999999999998
Q ss_pred EE--CCCCCEEEEEeCCCCEEEEEeCC
Q 046828 392 CF--DRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 392 aF--spdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.| +|++.+|+|+|.||. |+|||+.
T Consensus 256 ~~~~~~~~~~lvTaSSDG~-I~vWd~~ 281 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGF-IKVWDID 281 (362)
T ss_pred EEEecCCceEEEEeccCce-EEEEEcc
Confidence 83 788999999999997 8999996
|
|
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-12 Score=138.05 Aligned_cols=107 Identities=34% Similarity=0.602 Sum_probs=94.3
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
-.++++-+|..++..+.|+|+++++.+++..++.+++|.++|... +. .-....|+|++.||.|.++|..+
T Consensus 483 ~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~----ws------slaav~hly~l~rG~TsaKv~~~ 552 (788)
T KOG2109|consen 483 GVVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHAT----WS------SLAAVQHLYKLNRGSTSAKVVST 552 (788)
T ss_pred ceeEEEeeccCccceeeecccccceecccccccccceEEeecccc----cH------HHhhhhhhhhccCCCccceeeee
Confidence 467788899999999999999999999999999889999998752 21 12233589999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
+|+-|++|+|.....+|.|||.+.+|++....++|..
T Consensus 553 afs~dsrw~A~~t~~~TthVfk~hpYgg~aeqrth~~ 589 (788)
T KOG2109|consen 553 AFSEDSRWLAITTNHATTHVFKVHPYGGKAEQRTHGD 589 (788)
T ss_pred EeecchhhhhhhhcCCceeeeeeccccccccceecCC
Confidence 9999999999999999999999999999998888854
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-10 Score=115.48 Aligned_cols=253 Identities=21% Similarity=0.319 Sum_probs=162.7
Q ss_pred EEEEEeeccCCCCCCCCeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEE
Q 046828 65 VLWSSFDKLELSPSSFKHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVA 143 (627)
Q Consensus 65 V~wa~Fd~l~~~~~~~~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~ 143 (627)
-..+.|..+ ...|.+|+.+| +-|||..+.. +..+++.|--||.++.+.+.- |-| +. .
T Consensus 26 a~~~~Fs~~-------G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dg------------r~L-lt-s 83 (405)
T KOG1273|consen 26 AECCQFSRW-------GDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDG------------RKL-LT-S 83 (405)
T ss_pred cceEEeccC-------cceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCC------------CEe-ee-e
Confidence 346888764 34788888776 9999999866 678899999999999987643 233 21 1
Q ss_pred ccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--c-EEEEE-eCCe
Q 046828 144 CDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--R-IVAVG-LAAQ 219 (627)
Q Consensus 144 ~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~-~LaV~-~~~~ 219 (627)
+.+..|.+||+..|.+++.+.|.++|+.+.+.+ + ..++. ....
T Consensus 84 ---------------------------------S~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s 130 (405)
T KOG1273|consen 84 ---------------------------------SRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES 130 (405)
T ss_pred ---------------------------------cCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC
Confidence 124779999999999999999999999999987 2 22332 3333
Q ss_pred EEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCc
Q 046828 220 IYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGN 299 (627)
Q Consensus 220 I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs 299 (627)
-++-++.+ ..++++. -.++. .+. .+++.+
T Consensus 131 p~vi~~s~--~~h~~Lp-----------------------------~d~d~-------dln------------~sas~~- 159 (405)
T KOG1273|consen 131 PVVIDFSD--PKHSVLP-----------------------------KDDDG-------DLN------------SSASHG- 159 (405)
T ss_pred cEEEEecC--Cceeecc-----------------------------CCCcc-------ccc------------cccccc-
Confidence 34444333 2222221 11100 000 000000
Q ss_pred ccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEE
Q 046828 300 LMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVIS 379 (627)
Q Consensus 300 ~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~ 379 (627)
.|. +.|. +...+...|.+.|+|..+.++++
T Consensus 160 ------------------------------~fd-----------------r~g~---yIitGtsKGkllv~~a~t~e~va 189 (405)
T KOG1273|consen 160 ------------------------------VFD-----------------RRGK---YIITGTSKGKLLVYDAETLECVA 189 (405)
T ss_pred ------------------------------ccc-----------------CCCC---EEEEecCcceEEEEecchheeee
Confidence 000 0010 00134567999999999999999
Q ss_pred EeccCC-CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEc
Q 046828 380 QFRAHT-SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFS 458 (627)
Q Consensus 380 ~~~aH~-~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFS 458 (627)
.|+-.+ ..|..|-|+..|+.|++-+.|. +||+|++..--..|+.| .....++++.=.+.....+++||
T Consensus 190 s~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~~----------e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 190 SFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRDG----------EVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred eeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCccC----------CcChhHHHHHHHhhhhhhheeec
Confidence 999766 8899999999999999999996 59999985211111111 11223344333333446889999
Q ss_pred cCCCEEEEEeCCC-eEEEEEcCCCCCee
Q 046828 459 HYSQWIAIVSSRG-TCHIFVLTPFGGET 485 (627)
Q Consensus 459 pDg~~Las~S~dg-TvhIw~i~~~gg~~ 485 (627)
.||.|++.+|.+. .+.||.-.. |..+
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~-GsLV 285 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSI-GSLV 285 (405)
T ss_pred CCccEEEeccccceeEEEEecCC-ccee
Confidence 9999999888654 588998654 4444
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-10 Score=121.59 Aligned_cols=177 Identities=14% Similarity=0.180 Sum_probs=130.7
Q ss_pred CcEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
++.|.|||.+|.+.+++++ ++..|.++.|.. ++++.+.+..|++|++..+..+-++-+|+..
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~-------------- 288 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG-------------- 288 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------
Confidence 3779999999999999988 566999999965 6777777889999999998888788777542
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
.++++- | + .+|+ +
T Consensus 289 -v~~Ida--L--~--------reR~-----------------------------------------------v------- 301 (479)
T KOG0299|consen 289 -VLGIDA--L--S--------RERC-----------------------------------------------V------- 301 (479)
T ss_pred -eeeech--h--c--------ccce-----------------------------------------------E-------
Confidence 122210 0 0 0000 0
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
+.++.|.++++|++.. .....|.+|...|-|++|-.+ ..++|||++|. |-+|+
T Consensus 302 ------------------------tVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs 354 (479)
T KOG0299|consen 302 ------------------------TVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWS 354 (479)
T ss_pred ------------------------EeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEee
Confidence 0235789999999954 445578999999999999865 47889999998 89999
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc--------CcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS--------AVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~--------a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+.... + ..++++--|..+ -+|++|+-.|.+..+|+||.+|.|+||.+++
T Consensus 355 ~~KKk-------p----------lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 355 LLKKK-------P----------LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred ecccC-------c----------eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 85211 0 122222222222 2699999999999999999999999999986
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=141.47 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=168.8
Q ss_pred EEeeccCCCCC--CCCeEEEEeccCc-EEEEecCCC--CCceEEe---eecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 68 SSFDKLELSPS--SFKHVLLLGYSNG-FQVLDVEDA--TNVSELV---SRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 68 a~Fd~l~~~~~--~~~~vl~~Gy~~G-~qVWdv~~~--~~~~ell---s~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
-+|.+|.|+.. ...-|+++|.++| +-+||.... ++..+++ +.|.|+|+.+.|.+.- +.+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q------------~nlL 132 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ------------GNLL 132 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC------------Ccee
Confidence 56777766532 2234788787665 999999872 4344555 4688999888876532 2476
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE---ecCCeEEEEEecC---cEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL---RFRSTVYMVRCSP---RIVA 213 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL---~f~s~V~sV~~s~---~~La 213 (627)
|- | + .++.|.||||..-+.-.++ .+.+.|..+++|+ ++||
T Consensus 133 AS--G------a--------------------------~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 133 AS--G------A--------------------------DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred ec--c------C--------------------------CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhh
Confidence 53 1 1 1256999999875554444 3677999999998 7899
Q ss_pred EEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++... ++.|||++.-+.+..+..++.- +.+ .-|++-++..+
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~----------------~~~--S~l~WhP~~aT-------------------- 220 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGR----------------MHC--SVLAWHPDHAT-------------------- 220 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCc----------------cce--eeeeeCCCCce--------------------
Confidence 88755 8999999876655444433221 000 12333332110
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+++ + ....+..-.|.+||+
T Consensus 221 ------------------ql~-------------~------------------------------As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 221 ------------------QLL-------------V------------------------------ASGDDSAPVIQLWDL 239 (1049)
T ss_pred ------------------eee-------------e------------------------------ecCCCCCceeEeecc
Confidence 000 0 001234457999998
Q ss_pred CCC-eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 373 VSR-SVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 373 ~s~-~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
+.- .++..++.|...|.+|.|.+.+ ++|+|+..|++ |.+|+.. +| .-++++-++ ..
T Consensus 240 R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~-------tg------------Evl~~~p~~--~n 297 (1049)
T KOG0307|consen 240 RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPN-------TG------------EVLGELPAQ--GN 297 (1049)
T ss_pred cccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCC-------Cc------------eEeeecCCC--Cc
Confidence 764 4678889999999999999987 99999999999 6899975 44 267777552 23
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCC
Q 046828 451 VIQDICFSH-YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 451 ~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+.++.|.| +-..+|+++-||+|-||.+...
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 699999999 4458999999999999999754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-10 Score=113.66 Aligned_cols=130 Identities=19% Similarity=0.232 Sum_probs=95.0
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
..+-||.-..++++..+-+|...|+.|+|.+||..|.+++.+-..|-+|||... + ..+|+|.
T Consensus 230 q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~------------~pv~~L~ 291 (406)
T KOG2919|consen 230 QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R------------DPVYALE 291 (406)
T ss_pred ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c------------chhhhhh
Confidence 344555555677888888999999999999999999999998778999999622 1 2577776
Q ss_pred e--cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeec-ccccccccCCCCCCCccCCCCCCCcc
Q 046828 445 R--GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVL-QIQNSHVDRPTLSPVLSVPWWSSPSF 513 (627)
Q Consensus 445 r--G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~-~~h~s~v~~~~~~p~~~~~~~~~~~~ 513 (627)
| +.|+.+|+ ...-|+++|||+|+.||.|++|+++.++..+.. ..|..-+.+..+-|..++.+..+-.+
T Consensus 292 rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 292 RHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred hhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 5 33333332 344689999999999999999999998875533 33444455556677777666655544
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.8e-11 Score=123.34 Aligned_cols=185 Identities=11% Similarity=0.125 Sum_probs=129.3
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCce-EEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV-TFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V-~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+.++++++-|+++-.||++- .++-.+..-.+ ++..+..++ |+ ..+++|+
T Consensus 324 g~~~V~Gs~dr~i~~wdlDg----n~~~~W~gvr~~~v~dlait~------Dg-----k~vl~v~--------------- 373 (519)
T KOG0293|consen 324 GFRFVTGSPDRTIIMWDLDG----NILGNWEGVRDPKVHDLAITY------DG-----KYVLLVT--------------- 373 (519)
T ss_pred CceeEecCCCCcEEEecCCc----chhhcccccccceeEEEEEcC------CC-----cEEEEEe---------------
Confidence 46788888899999999985 23444433221 233333333 22 3344443
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVL 235 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~ 235 (627)
.+..+++|+.++...+..+.-+.+|.++.+|. +++.|.+.. +|++||+...+.+....
T Consensus 374 -------------------~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 374 -------------------VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred -------------------cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 12569999999998888888888999999986 677777655 79999999766655555
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|... -+-+. -.|++.+ +.
T Consensus 435 Ghkq~---------------~fiIr---SCFgg~~---------------------------~~---------------- 453 (519)
T KOG0293|consen 435 GHKQG---------------HFIIR---SCFGGGN---------------------------DK---------------- 453 (519)
T ss_pred ccccc---------------ceEEE---eccCCCC---------------------------cc----------------
Confidence 55321 01110 0111100 00
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR 395 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp 395 (627)
| .+++++|+.|+||+..+++++..+.+|...|+|++++|
T Consensus 454 --------------------------------------f---iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 454 --------------------------------------F---IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred --------------------------------------e---EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 0 02568999999999999999999999999999999999
Q ss_pred C-CCEEEEEeCCCCEEEEEeCC
Q 046828 396 S-GTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 396 d-G~lLaTaS~dGt~I~Vwdi~ 416 (627)
. -.++|+||+||| ||||-..
T Consensus 493 ~~p~m~ASasDDgt-IRIWg~~ 513 (519)
T KOG0293|consen 493 ADPEMFASASDDGT-IRIWGPS 513 (519)
T ss_pred CCHHHhhccCCCCe-EEEecCC
Confidence 5 578999999999 8999864
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=127.52 Aligned_cols=192 Identities=24% Similarity=0.331 Sum_probs=138.5
Q ss_pred CcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
.++|+|||++...+.+.|+ +.+.|..|..|- .+||++. .+.|.|..+.|...-.++ ++++-+
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f-~~~sgq------------- 165 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF-TIDSGQ------------- 165 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce-ecCCCC-------------
Confidence 3789999999777777777 557999999875 6787664 568999999887654333 222210
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
++ |.|-|...... +
T Consensus 166 ---sv--Rll~ys~skr~---------------------------------------l---------------------- 179 (673)
T KOG4378|consen 166 ---SV--RLLRYSPSKRF---------------------------------------L---------------------- 179 (673)
T ss_pred ---eE--EEeecccccce---------------------------------------e----------------------
Confidence 11 77888764311 0
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEe-ccCCCCeEEEEECCCC-CEEEEEeCCCCEEEE
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQF-RAHTSPISALCFDRSG-TLLVTASIHGNNINI 412 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~-~aH~~~Is~laFspdG-~lLaTaS~dGt~I~V 412 (627)
...++.+|.|.+||+....++.++ .+|..|...|||+|.. .+|++.+-|.. |++
T Consensus 180 -----------------------L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~ 235 (673)
T KOG4378|consen 180 -----------------------LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INI 235 (673)
T ss_pred -----------------------eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEE
Confidence 013468999999999998877765 4999999999999975 56788888876 899
Q ss_pred EeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee-eccccc
Q 046828 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET-VLQIQN 491 (627)
Q Consensus 413 wdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~-~~~~h~ 491 (627)
||+. ... ..-.+- ..+....++|+++|.+|++|+.+|.+..||+.....++ .+..|.
T Consensus 236 yD~~-s~~------------------s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 236 YDIR-SQA------------------STDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred eecc-ccc------------------ccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 9985 210 111111 12457899999999999999999999999998776655 345676
Q ss_pred ccccC
Q 046828 492 SHVDR 496 (627)
Q Consensus 492 s~v~~ 496 (627)
..|..
T Consensus 294 ~sVt~ 298 (673)
T KOG4378|consen 294 ASVTR 298 (673)
T ss_pred cceeE
Confidence 65544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=117.47 Aligned_cols=106 Identities=15% Similarity=0.277 Sum_probs=86.7
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+++.|..|.|||++ ++.+.++......-...+.||+|++||.+.-.-. ++||.+--. . .|+. .+..+
T Consensus 204 sas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f~--k--dG~f-------qev~r 270 (420)
T KOG2096|consen 204 SASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIFT--K--DGTF-------QEVKR 270 (420)
T ss_pred EecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEec--c--Ccch-------hhhhh
Confidence 35678899999999 8999999988888888899999999999998876 799986411 1 3431 12246
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.++| .||..| |...+||++++.+++.|.||+.+||+++-
T Consensus 271 vf~L-kGH~sa-V~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 271 VFSL-KGHQSA-VLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred hhee-ccchhh-eeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 7777 688765 99999999999999999999999999873
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=116.91 Aligned_cols=129 Identities=12% Similarity=0.178 Sum_probs=91.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc---------c
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ---------T 430 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~---------~ 430 (627)
++..||.|.|||...-..+..|++|...|+.|+..|+|++-.+.+.|+. +|.|++. +|.... .
T Consensus 102 S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~-lr~WNLV-------~Gr~a~v~~L~~~at~ 173 (362)
T KOG0294|consen 102 SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV-LRTWNLV-------RGRVAFVLNLKNKATL 173 (362)
T ss_pred eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce-eeeehhh-------cCccceeeccCCccee
Confidence 4678999999999999999999999999999999999999999999986 8999997 232110 0
Q ss_pred cCC--CCc--------eeEEEEEee------cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 431 YDW--TSS--------HVHLYKLHR------GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 431 ~~~--~~~--------~~~l~~l~r------G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
-.| .+. ...+|++.. -..+.+|.++.|- ++..|++|.++++|.+||-+.......+.+|..++
T Consensus 174 v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RV 252 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRV 252 (362)
T ss_pred eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhhe
Confidence 001 111 012222210 0112234555553 55678888999999999988766666778888777
Q ss_pred cCC
Q 046828 495 DRP 497 (627)
Q Consensus 495 ~~~ 497 (627)
+..
T Consensus 253 K~i 255 (362)
T KOG0294|consen 253 KDI 255 (362)
T ss_pred eee
Confidence 654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-09 Score=123.54 Aligned_cols=235 Identities=15% Similarity=0.177 Sum_probs=161.5
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
..+.|.|+.-+. .++++...++.+++|...... ...++.+-.-|.+.+.+.- .+.++|
T Consensus 55 ~g~~v~~ia~~s--------~~f~~~s~~~tv~~y~fps~~-~~~iL~Rftlp~r~~~v~g-------------~g~~ia 112 (933)
T KOG1274|consen 55 SGELVSSIACYS--------NHFLTGSEQNTVLRYKFPSGE-EDTILARFTLPIRDLAVSG-------------SGKMIA 112 (933)
T ss_pred cCceeEEEeecc--------cceEEeeccceEEEeeCCCCC-ccceeeeeeccceEEEEec-------------CCcEEE
Confidence 456677766442 357777778889999999855 3557777667777766542 235554
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-e
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-L 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~ 216 (627)
. + ..+..|++-++.+...+..++ +..+|..|.+++ .+|||+ .
T Consensus 113 a-g---------------------------------sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 113 A-G---------------------------------SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred e-e---------------------------------cCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec
Confidence 3 1 124779999999999888887 567999999998 688877 5
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEc-C-ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVG-P-RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~-~-r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
+++|+|||+.++.+.+++.+-.--. -+-.. . .-+|+.++.
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n--------------~~~~s~i~~~~aW~Pk~------------------------ 200 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDN--------------EFILSRICTRLAWHPKG------------------------ 200 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccc--------------cccccceeeeeeecCCC------------------------
Confidence 7899999999999988886532100 00000 0 012222210
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
|.++ ....++.|++|+..+
T Consensus 201 ---------------------------------------------------------g~la----~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 201 ---------------------------------------------------------GTLA----VPPVDNTVKVYSRKG 219 (933)
T ss_pred ---------------------------------------------------------CeEE----eeccCCeEEEEccCC
Confidence 1111 224678999999998
Q ss_pred CeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 375 RSVISQFRA--HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 375 ~~~l~~~~a--H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
......++. |.+.++.++|+|.|++||+++.+|. |-|||++.+ ..++++ ..|
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWnv~t~--------------------~~~~~~-----~~V 273 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWNVDTH--------------------ERHEFK-----RAV 273 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEecccc--------------------hhcccc-----cee
Confidence 887777763 4455999999999999999999998 799998621 112221 249
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEE
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw 476 (627)
.+++|-|++.-|-.....|+.-+|
T Consensus 274 c~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 274 CCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEecCCCCCeeEEEeeccccccC
Confidence 999999998887776666665544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-09 Score=108.59 Aligned_cols=99 Identities=11% Similarity=0.205 Sum_probs=82.2
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..|.+|+.-++.+.+.+..|.+|...|..|+.+|-+..+.++|.|.+ ||+||++ ...+ ..+.
T Consensus 77 k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t-vrLWDlR-~~~c----------------qg~l 138 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT-VRLWDLR-VKKC----------------QGLL 138 (311)
T ss_pred CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCe-EEeeEec-CCCC----------------ceEE
Confidence 46788999999999999999999999999999999999999999998 8999997 2211 1222
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.+. + -..+||.|+|-++|++...+.|+|||+..++..
T Consensus 139 ~~~-~-----~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 139 NLS-G-----RPIAAFDPEGLIFALANGSELIKLYDLRSFDKG 175 (311)
T ss_pred ecC-C-----CcceeECCCCcEEEEecCCCeEEEEEecccCCC
Confidence 221 1 134799999999999999999999999998654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-10 Score=115.30 Aligned_cols=253 Identities=15% Similarity=0.157 Sum_probs=155.6
Q ss_pred ECCCCce----EEEEe-cCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccccee
Q 046828 186 SLRSHNY----VHVLR-FRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPM 257 (627)
Q Consensus 186 dl~t~~~----V~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~i 257 (627)
+.+++.. ++++. ++.-|+.|+.-. .++..+.++ +..||.+++++++.+..+|... ++.+
T Consensus 130 sFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-------------VNsi 196 (481)
T KOG0300|consen 130 SFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS-------------VNSI 196 (481)
T ss_pred eecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc-------------eeeE
Confidence 3455553 34444 456899988753 677777666 6899999999999998887542 6677
Q ss_pred eEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh---hhcc-eeecCCcceeEEeeee
Q 046828 258 AVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ---LAAG-LINLGDMGYKTLSRYY 331 (627)
Q Consensus 258 Al~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~---l~~g-l~~lg~~g~~~~s~y~ 331 (627)
.+.+ .+++.++.+.+.++|.- ..+.-.|..+.+.+-.+.+. .+.+.+ ...+ ...-|+.=...+.++.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~-av~~~vP~~~a~~~hSsEeE------~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt 269 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKA-AVNWEVPSNNAPSDHSSEEE------EEHSDEHNRDTDSSEKSDGHTIRVPLMRLT 269 (481)
T ss_pred EeccccceEEEccCCcchHHHHH-hhcCcCCCCCCCCCCCchhh------hhcccccccccccccccCCceeeeeeeeee
Confidence 7765 56777777777766632 12222221111111111110 000000 0000 0000111011111110
Q ss_pred ccccCCCCCCCccCCCccccC-cccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAG-RNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNI 410 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g-~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I 410 (627)
|....+ .-..|-.| .-. ..++-|.+..+||+++++++..+.+|.+.++..+-.|.-++++|+|.|-| +
T Consensus 270 ------gH~~vV-~a~dWL~gg~Q~---vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-F 338 (481)
T KOG0300|consen 270 ------GHRAVV-SACDWLAGGQQM---VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-F 338 (481)
T ss_pred ------ccccce-EehhhhcCccee---eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-e
Confidence 111111 11345432 111 24678899999999999999999999999999999999999999999976 8
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC-CCeeeccc
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF-GGETVLQI 489 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~-gg~~~~~~ 489 (627)
|+||..+.. +-...+.||+. .|.+..|.-|.+ ++++|+|.||+||++..- ....++++
T Consensus 339 RLWDFReaI-------------------~sV~VFQGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 339 RLWDFREAI-------------------QSVAVFQGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred Eeccchhhc-------------------ceeeeeccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec
Confidence 999987332 23345579875 599999999864 679999999999999643 33344444
Q ss_pred c
Q 046828 490 Q 490 (627)
Q Consensus 490 h 490 (627)
.
T Consensus 398 d 398 (481)
T KOG0300|consen 398 D 398 (481)
T ss_pred C
Confidence 3
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=124.43 Aligned_cols=218 Identities=17% Similarity=0.267 Sum_probs=149.4
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeec--CCce-EEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceee
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRR--DDPV-TFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHV 155 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~--dG~V-~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~ 155 (627)
+++.+++.|+...+-|||+.... ..+-... .++. ..+.+.|.- .+ ++.+|
T Consensus 476 dgrtLivGGeastlsiWDLAapT--prikaeltssapaCyALa~spDa-------------kv-cFscc----------- 528 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDA-------------KV-CFSCC----------- 528 (705)
T ss_pred CCceEEeccccceeeeeeccCCC--cchhhhcCCcchhhhhhhcCCcc-------------ce-eeeec-----------
Confidence 46899999999999999998765 2222111 1232 223333321 22 33332
Q ss_pred eccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC---cEEEEEeCCeEEEEeCCCCcee
Q 046828 156 HVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP---RIVAVGLAAQIYCFDALTLESK 231 (627)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~---~~LaV~~~~~I~i~D~~t~e~~ 231 (627)
+++.|.||||+....|+.|+. ..-+.+|.+++ ++-.-|++..|++||+++++.+
T Consensus 529 ----------------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 529 ----------------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred ----------------------cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence 335699999999999999995 45889999995 5556678999999999988754
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEc----CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVG----PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~----~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.. |.-. ..+|+|+ ..|||.+=
T Consensus 587 qq---hdF~-------------SQIfSLg~cP~~dWlavGM--------------------------------------- 611 (705)
T KOG0639|consen 587 QQ---HDFS-------------SQIFSLGYCPTGDWLAVGM--------------------------------------- 611 (705)
T ss_pred hh---hhhh-------------hhheecccCCCccceeeec---------------------------------------
Confidence 32 2111 1234443 25666652
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP 387 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~ 387 (627)
+.+.|.|-.. ++....++.-|.+-
T Consensus 612 -------------------------------------------------------ens~vevlh~-skp~kyqlhlheSc 635 (705)
T KOG0639|consen 612 -------------------------------------------------------ENSNVEVLHT-SKPEKYQLHLHESC 635 (705)
T ss_pred -------------------------------------------------------ccCcEEEEec-CCccceeecccccE
Confidence 1222222222 22344567778999
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~ 467 (627)
|.+|.|.+-|+++++...|.- ++.|++ |. |. .+++... ...|.++..|-|.++|++|
T Consensus 636 VLSlKFa~cGkwfvStGkDnl-Lnawrt-Py------Ga------------siFqskE---~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNL-LNAWRT-PY------GA------------SIFQSKE---SSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred EEEEEecccCceeeecCchhh-hhhccC-cc------cc------------ceeeccc---cCcceeeeeccCceEEEec
Confidence 999999999999999999964 799997 54 32 4665542 3459999999999999999
Q ss_pred eCCCeEEEEEcC
Q 046828 468 SSRGTCHIFVLT 479 (627)
Q Consensus 468 S~dgTvhIw~i~ 479 (627)
|.|...-||.+.
T Consensus 693 SGdkkATVYeV~ 704 (705)
T KOG0639|consen 693 SGDKKATVYEVI 704 (705)
T ss_pred CCCcceEEEEEe
Confidence 999999998863
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-09 Score=119.69 Aligned_cols=189 Identities=20% Similarity=0.258 Sum_probs=128.1
Q ss_pred CcEEEEEECCCCceE-EEEecC--CeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYV-HVLRFR--STVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V-~tL~f~--s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
++.|.||+++.+=+. .+|..+ ..|-++++.+ |++.+++++.|.-||+.+++.++.+.....+
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~------------- 112 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA------------- 112 (691)
T ss_pred CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc-------------
Confidence 467999999986443 233332 4899999984 7778889999999999999988877543222
Q ss_pred cceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 254 YGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 254 ~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
...+|+.| .-||
T Consensus 113 IWsiai~p~~~~l~------------------------------------------------------------------ 126 (691)
T KOG2048|consen 113 IWSIAINPENTILA------------------------------------------------------------------ 126 (691)
T ss_pred eeEEEeCCccceEE------------------------------------------------------------------
Confidence 22333322 0111
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEE--EEeccCCCCeEEEEECCCCCEEEEEeCCCCE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVI--SQFRAHTSPISALCFDRSGTLLVTASIHGNN 409 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l--~~~~aH~~~Is~laFspdG~lLaTaS~dGt~ 409 (627)
-+.+||.+..++...++.. ..|..-++.|-+|+|+|+|+.||+|+.||.
T Consensus 127 ----------------------------IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~- 177 (691)
T KOG2048|consen 127 ----------------------------IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV- 177 (691)
T ss_pred ----------------------------eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce-
Confidence 1235665555565555432 223344688999999999999999999995
Q ss_pred EEEEeCCCCCCCCCCCCCccccCCCCceeE-----EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 410 INIFRIMPSSSKGRSGSASQTYDWTSSHVH-----LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 410 I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~-----l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
|+|||.. . +.. .+ +-++.++ ...-|+++.|=.|+ .||+|.+.|||.+||-......
T Consensus 178 Iriwd~~-~------~~t----------~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 178 IRIWDVK-S------GQT----------LHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EEEEEcC-C------Cce----------EEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh
Confidence 8999986 2 220 13 1222222 23348999998776 6789999999999998877666
Q ss_pred eecccccccc
Q 046828 485 TVLQIQNSHV 494 (627)
Q Consensus 485 ~~~~~h~s~v 494 (627)
....-|+++|
T Consensus 239 qS~~~h~adV 248 (691)
T KOG2048|consen 239 QSHSCHDADV 248 (691)
T ss_pred hhhhhhhcce
Confidence 6666676654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=129.56 Aligned_cols=220 Identities=17% Similarity=0.228 Sum_probs=143.4
Q ss_pred CeEEEEeccC-cEEEEecCCCC--CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeec
Q 046828 81 KHVLLLGYSN-GFQVLDVEDAT--NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHV 157 (627)
Q Consensus 81 ~~vl~~Gy~~-G~qVWdv~~~~--~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~ 157 (627)
.+++..+..+ -+-|||+.... ....++..|.-.|..+.+.+. .|-|++ . |
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t-------------ep~ili-S-------G------ 152 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST-------------EPNILI-S-------G------ 152 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC-------------CccEEE-e-------c------
Confidence 3455555555 59999999733 223466778777777776543 266554 2 1
Q ss_pred cCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC---cEEEEEeC-CeEEEEeCCCCce-e
Q 046828 158 GRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP---RIVAVGLA-AQIYCFDALTLES-K 231 (627)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~---~~LaV~~~-~~I~i~D~~t~e~-~ 231 (627)
+ | +++|++||+|..+-+.++...+ .|++|+|++ ...+++.+ +.+.+||++..++ .
T Consensus 153 ---------S---Q-------Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~ 213 (839)
T KOG0269|consen 153 ---------S---Q-------DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE 213 (839)
T ss_pred ---------C---C-------CceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH
Confidence 1 1 4899999999998888877665 899999997 56666654 4799999986543 3
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESS 309 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~ 309 (627)
+.+..|..| +-.+.+.| .|||.
T Consensus 214 ~k~~AH~Gp-------------V~c~nwhPnr~~lAT------------------------------------------- 237 (839)
T KOG0269|consen 214 KKLTAHNGP-------------VLCLNWHPNREWLAT------------------------------------------- 237 (839)
T ss_pred HHhhcccCc-------------eEEEeecCCCceeee-------------------------------------------
Confidence 344444333 11122222 24443
Q ss_pred hhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE--EEEeccCCCC
Q 046828 310 KQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV--ISQFRAHTSP 387 (627)
Q Consensus 310 k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~--l~~~~aH~~~ 387 (627)
++.|++|+|||..+.+. +.++. ...|
T Consensus 238 ---------------------------------------------------GGRDK~vkiWd~t~~~~~~~~tIn-Tiap 265 (839)
T KOG0269|consen 238 ---------------------------------------------------GGRDKMVKIWDMTDSRAKPKHTIN-TIAP 265 (839)
T ss_pred ---------------------------------------------------cCCCccEEEEeccCCCccceeEEe-ecce
Confidence 34789999999986543 33333 2579
Q ss_pred eEEEEECCCCC-EEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEE
Q 046828 388 ISALCFDRSGT-LLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWI 464 (627)
Q Consensus 388 Is~laFspdG~-lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~L 464 (627)
|.+|+|-|.-+ .|||+|. .-+.|+|||+.. +. ..|....-|+. .+..|+|-. |-..|
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR-PY------------------IP~~t~~eH~~-~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRR-PY------------------IPYATFLEHTD-SVTGIAWDSGDRINL 325 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeecc-cc------------------ccceeeeccCc-cccceeccCCCceee
Confidence 99999999865 5777664 336799999961 10 11222223333 488999955 77888
Q ss_pred EEEeCCCeEE
Q 046828 465 AIVSSRGTCH 474 (627)
Q Consensus 465 as~S~dgTvh 474 (627)
.+++.||||-
T Consensus 326 ~s~sKD~tv~ 335 (839)
T KOG0269|consen 326 WSCSKDGTVL 335 (839)
T ss_pred EeecCccHHH
Confidence 9999999974
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-09 Score=116.41 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=54.1
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe
Q 046828 389 SALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS 468 (627)
Q Consensus 389 s~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S 468 (627)
...+|+|||+.|+.++.++ +.+||+. +|. ...+..+. ...+++|+|||++|+.++
T Consensus 336 ~~~~~SpDG~~ia~~~~~~--i~~~Dl~-------~g~-------------~~~lt~~~---~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN--VVKQDLT-------SGS-------------TEVLSSTF---LDESPSISPNGIMIIYSS 390 (429)
T ss_pred CCccCCCCCCEEEEEcCCC--EEEEECC-------CCC-------------eEEecCCC---CCCCceECCCCCEEEEEE
Confidence 4578999999999988764 4568875 231 11222221 235688999999999999
Q ss_pred CCCeEEEEEcCCCCC--eeecccccccc
Q 046828 469 SRGTCHIFVLTPFGG--ETVLQIQNSHV 494 (627)
Q Consensus 469 ~dgTvhIw~i~~~gg--~~~~~~h~s~v 494 (627)
.+|.+.+|.+....| ...+..|...+
T Consensus 391 ~~g~~~~l~~~~~~G~~~~~l~~~~g~~ 418 (429)
T PRK01742 391 TQGLGKVLQLVSADGRFKARLPGSDGQV 418 (429)
T ss_pred cCCCceEEEEEECCCCceEEccCCCCCC
Confidence 999999888754322 23454554433
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-08 Score=98.43 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=80.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEecc--C-----CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRA--H-----TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~a--H-----~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
++++|.+|+.||+.-..++.++.. | .+.|.+++.+|+|++||++-.|.. ..+|||. .|
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydir-------g~------- 263 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDIR-------GG------- 263 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEee-------CC-------
Confidence 467899999999988777776652 2 367999999999999999999976 7899996 22
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+.+.++.. +.+.|.++.|||...|+.++|.|..|++=++.
T Consensus 264 -----r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 -----RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred -----ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 24554432 34679999999999999999999999998875
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-10 Score=123.66 Aligned_cols=202 Identities=15% Similarity=0.206 Sum_probs=135.9
Q ss_pred CcEEEEEECCCCceEEEEecCC---eEEE-EEec--C-cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS---TVYM-VRCS--P-RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s---~V~s-V~~s--~-~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
+++++||+-+..+++.+..|.. .|.. +.+- . -+|+++ .|..|.+|...+.+.++++.+|..-
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn---------- 103 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN---------- 103 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc----------
Confidence 4789999998888877655443 2222 3332 2 345555 5668999999999999999999642
Q ss_pred ccccceeeEc--CceEEEcCCCCCcCCCCccC----CCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcce
Q 046828 251 NIGYGPMAVG--PRWLAYASNNPLLPNTGRLS----PQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY 324 (627)
Q Consensus 251 ~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~----~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~ 324 (627)
+..++.+ ++ |-.++-+.++..|-... .|.|+.
T Consensus 104 ---VC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~a-------------------------------------- 141 (745)
T KOG0301|consen 104 ---VCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTA-------------------------------------- 141 (745)
T ss_pred ---eeeeecCCcCc-eEecccccceEEecchhhhcccCCcch--------------------------------------
Confidence 2223322 12 34444444443332110 111111
Q ss_pred eEEeeeeccccCCCCCCCccCCCccccCccc-ccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEE
Q 046828 325 KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNA-SHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTA 403 (627)
Q Consensus 325 ~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~-~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTa 403 (627)
+-|..-.++ ....+++.|.+|++|.- ++.+.+|.+|+.-|..|++=+++. ++++
T Consensus 142 ----------------------sVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flSc 196 (745)
T KOG0301|consen 142 ----------------------SVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSC 196 (745)
T ss_pred ----------------------heeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEee
Confidence 112111111 00124678999999976 678899999999999999998875 5689
Q ss_pred eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 404 SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 404 S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+.||. |+.|++. |. .+++. -||++ -|++|+..++++.+++++.|+|++||+...
T Consensus 197 sNDg~-Ir~w~~~--------ge------------~l~~~-~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 197 SNDGS-IRLWDLD--------GE------------VLLEM-HGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred cCCce-EEEEecc--------Cc------------eeeee-eccce-EEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 99997 8999984 32 56665 57775 499999999999999999999999999874
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-08 Score=109.49 Aligned_cols=268 Identities=16% Similarity=0.138 Sum_probs=162.3
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
+|.-|+.+.|.+ .+ .|+..-.++.+-||+.....-.+... .|+|.|.++.|+-+- .||
T Consensus 245 ekk~Vl~v~F~e--ng-----dviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~G-------------tll- 302 (626)
T KOG2106|consen 245 EKKFVLCVTFLE--NG-----DVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDG-------------TLL- 302 (626)
T ss_pred cceEEEEEEEcC--CC-----CEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCc-------------cEe-
Confidence 457899999964 23 47777777779999998766556666 899999998887542 232
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC---CeEEEEEecCcEEEEEeC
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR---STVYMVRCSPRIVAVGLA 217 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~---s~V~sV~~s~~~LaV~~~ 217 (627)
+ +| -+++|..|| ..-+.++.++.+ .+|+.|+=.+--|.||..
T Consensus 303 --S------Gg--------------------------KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 303 --S------GG--------------------------KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred --e------cC--------------------------ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence 1 12 248899999 333444555544 477777766522555543
Q ss_pred CeEEEE-eCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 218 AQIYCF-DALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 218 ~~I~i~-D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
..-.++ .++++-. .+..+|... ..-+|+.| ..++.++.++.+.+|..-.+
T Consensus 348 rN~iL~Gt~~~~f~-~~v~gh~de-------------lwgla~hps~~q~~T~gqdk~v~lW~~~k~------------- 400 (626)
T KOG2106|consen 348 RNFILQGTLENGFT-LTVQGHGDE-------------LWGLATHPSKNQLLTCGQDKHVRLWNDHKL------------- 400 (626)
T ss_pred cceEEEeeecCCce-EEEEecccc-------------eeeEEcCCChhheeeccCcceEEEccCCce-------------
Confidence 322222 2222211 122233221 12244443 46777777776666521000
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+-++.+ ++.. -|.+..|. |.+ +.+...|.--|.|.++
T Consensus 401 ------------~wt~~~-------~d~~------~~~~fhps--------------g~v----a~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 401 ------------EWTKII-------EDPA------ECADFHPS--------------GVV----AVGTATGRWFVLDTET 437 (626)
T ss_pred ------------eEEEEe-------cCce------eEeeccCc--------------ceE----EEeeccceEEEEeccc
Confidence 000000 0000 01111111 111 2345678888999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 375 RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
.. +.+++...+++++++|+|||.+||.||.|+. |.||.+.. +| +.|...+-.+.+.|..
T Consensus 438 ~~-lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~------~g-------------~~y~r~~k~~gs~ith 496 (626)
T KOG2106|consen 438 QD-LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSA------NG-------------RKYSRVGKCSGSPITH 496 (626)
T ss_pred ce-eEEEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECC------CC-------------cEEEEeeeecCceeEE
Confidence 54 4455544899999999999999999999998 89999862 23 2222222222256999
Q ss_pred EEEccCCCEEEEEeCCCeEEEE
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw 476 (627)
+.||+|+++|.+-|-|--+-.|
T Consensus 497 LDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeecCCCceEEeccCceEEEEE
Confidence 9999999999999999999999
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-07 Score=96.99 Aligned_cols=250 Identities=20% Similarity=0.284 Sum_probs=162.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.+.|.-..|+. ....++..+.++.+.+||..... .+..+...+...+..+... .+.. ..
T Consensus 63 ~~~~~i~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~ 124 (466)
T COG2319 63 GHEDSITSIAFSP------DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDG-----------NS 124 (466)
T ss_pred eccceEEEEEECC------CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCc-----------ce
Confidence 3445555566653 22556667779999999999865 3333333232233333332 3211 21
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC-CceEEEEec-CCeEEEEEecC--cEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS-HNYVHVLRF-RSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t-~~~V~tL~f-~s~V~sV~~s~--~~LaV 214 (627)
+++.. ...++.+++||..+ ...+..+.. ...|..+.+++ +.+++
T Consensus 125 ~~~~~--------------------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 172 (466)
T COG2319 125 ILLAS--------------------------------SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172 (466)
T ss_pred EEecc--------------------------------CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEe
Confidence 12111 01246799999998 777777774 46899999987 45666
Q ss_pred Ee--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 215 GL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 215 ~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
+. ++.+++||+.+.+.+..+.+|..+ + ..+++.+....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v-------~~~~~~~~~~~-------------------- 212 (466)
T COG2319 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDP-------------V-------SSLAFSPDGGL-------------------- 212 (466)
T ss_pred cCCCCCceEEEEcCCCceEEeeccCCCc-------------e-------EEEEEcCCcce--------------------
Confidence 64 678999999987777666654322 1 12333321100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
.+ .....++.|++||.
T Consensus 213 ---------------------------------~~-------------------------------~~~~~d~~i~~wd~ 228 (466)
T COG2319 213 ---------------------------------LI-------------------------------ASGSSDGTIRLWDL 228 (466)
T ss_pred ---------------------------------EE-------------------------------EEecCCCcEEEEEC
Confidence 00 01247889999999
Q ss_pred CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 373 VSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 373 ~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
..+..+. .+..|...+ ...|+|++.++++++.++. +++|++... . ..+..+ .++ ...
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~-------~-----------~~~~~~-~~~-~~~ 286 (466)
T COG2319 229 STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSS-------S-----------SLLRTL-SGH-SSS 286 (466)
T ss_pred CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCC-------C-----------cEEEEE-ecC-Ccc
Confidence 9888877 699998885 4489999999999999998 899998511 1 123333 444 345
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
|.++.|+|++..+++++.|+++++|++.......
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 9999999999999999999999999877654333
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-10 Score=118.27 Aligned_cols=216 Identities=17% Similarity=0.207 Sum_probs=135.7
Q ss_pred CcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC-cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 176 AMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP-RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 176 ~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~-~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
...++.|+||||.+.+++.+++ +.+.|..|.+.. .++.+|.+.+|+.|-+.- ..++++.+...- -|
T Consensus 85 Gs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~-------~g---- 152 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVY-------LG---- 152 (433)
T ss_pred cccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeeccccc-------cc----
Confidence 3457889999999999999999 455999999987 666677777899997654 456666653211 01
Q ss_pred cceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 254 YGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 254 ~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
+.-. ....|.++.+ +.+|.- +..+| . +.+ ..|+.+++..
T Consensus 153 ---Idh~~~~~~FaTcGe~--i~IWD~---~R~~P-v-------------------------~sm----swG~Dti~sv- 193 (433)
T KOG0268|consen 153 ---IDHHRKNSVFATCGEQ--IDIWDE---QRDNP-V-------------------------SSM----SWGADSISSV- 193 (433)
T ss_pred ---cccccccccccccCce--eeeccc---ccCCc-c-------------------------cee----ecCCCceeEE-
Confidence 1110 1123333322 222211 11111 0 000 0111111100
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNIN 411 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~ 411 (627)
...| . -+...+.+..|+.|.|||+....++..+.- +..-+.|+|+|.+--+++|++|-. +.
T Consensus 194 -kfNp------v----------ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~n-lY 254 (433)
T KOG0268|consen 194 -KFNP------V----------ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHN-LY 254 (433)
T ss_pred -ecCC------C----------cchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccccc-ce
Confidence 0000 0 001123566899999999998876554332 233477999999888999999954 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.||+. .-+ +....++||.+| |.+++|||.|+-++++|-|.||+||.++..
T Consensus 255 ~~DmR-~l~------------------~p~~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 255 TYDMR-NLS------------------RPLNVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred ehhhh-hhc------------------ccchhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence 99985 211 223345788776 999999999999999999999999998753
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-08 Score=103.87 Aligned_cols=107 Identities=7% Similarity=0.080 Sum_probs=69.0
Q ss_pred CCCeEEEEECCCCeEEE-------EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 363 IAGMVVVKDIVSRSVIS-------QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~-------~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
.++.|.|||+.+...+. .+.. ......++|+|||++|+++.+....|.+|++.+. ++.
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-----~~~--------- 210 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-----HGE--------- 210 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-----CCC---------
Confidence 56789999997643221 1222 2335679999999999999884445899999621 111
Q ss_pred ceeEEEEEeec---CC-cCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCCee
Q 046828 436 SHVHLYKLHRG---MT-SAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGGET 485 (627)
Q Consensus 436 ~~~~l~~l~rG---~t-~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg~~ 485 (627)
...+.++... .. ......|.|+||+++|+++.. +++|.+|+++..++..
T Consensus 211 -~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 211 -IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred -EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence 0122222110 00 011346999999999999854 7899999998765543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-09 Score=112.80 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 361 TDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..||.|+-+|+++. +++.++++|..+|++|++++.- .+|+|+|.++. +++|++.-. ++ ...+.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~-----~~--------~~v~~ 413 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVD-----SP--------KSVKE 413 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCC-----CC--------ccccc
Confidence 357999999999876 8999999999999999999864 47999999987 799998521 11 11112
Q ss_pred EEEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~ 481 (627)
|-.++ .+..|.++.|+- -+||.++.++-++||++...
T Consensus 414 ~~~~~------~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 414 HSFKL------GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccccc------cceeecccCCCcceEEEecCccceEEEeecccC
Confidence 33333 225777777754 57888999999999999764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-08 Score=113.36 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=74.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
..+..++.+|+-++++|+..|.. ||||+|. +|. ..+.++-.|++. .....+...|.|-|||
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrn-irif~i~-------sgK----------q~k~FKgs~~~e-G~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRN-IRIFDIE-------SGK----------QVKSFKGSRDHE-GDLIKVILDPSGIYLA 657 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccc-eEEEecc-------ccc----------eeeeecccccCC-CceEEEEECCCccEEE
Confidence 45899999999999999999976 8999997 342 123444334443 3477888999999999
Q ss_pred EEeCCCeEEEEEcCCCCCeeecccccccccCCCC
Q 046828 466 IVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTL 499 (627)
Q Consensus 466 s~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~ 499 (627)
++..|.|+-+||.-..+.-....+|...|.|..+
T Consensus 658 tScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred EeecCCceEEEEeccchhhhhhcCcchheeeeee
Confidence 9999999999999877766778888877766543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.9e-09 Score=106.15 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=167.5
Q ss_pred hhhhccCCCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCC
Q 046828 50 VAASISGDSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQ 129 (627)
Q Consensus 50 ~~~~~~~~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~ 129 (627)
|+..++..-+.+||.|.-+.-|.- .+.+-....|.+-.||.++.+. ..--+..|-|.|.+++|.+.
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~t------qpi~gtASADhTA~iWs~Esg~-CL~~Y~GH~GSVNsikfh~s------- 201 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADST------QPICGTASADHTARIWSLESGA-CLATYTGHTGSVNSIKFHNS------- 201 (481)
T ss_pred eeEeehhhhcccccceeeehhhcC------CcceeecccccceeEEeecccc-ceeeecccccceeeEEeccc-------
Confidence 444455556778888877776531 2344456668899999999866 45566779999999988653
Q ss_pred CCcCCCCCEEEEEEccCccC----------Ccceeee--ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe
Q 046828 130 EGFRNSHPLLLVVACDEAKN----------SGLVHVH--VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR 197 (627)
Q Consensus 130 D~f~~~rpLlavv~~d~~~~----------~g~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~ 197 (627)
+-|++...+|++.- ..++.+. ++.+-.... | +.-...+..++.=...-..++..|+
T Consensus 202 ------~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s---D---e~~~d~d~~~~sD~~tiRvPl~~lt 269 (481)
T KOG0300|consen 202 ------GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS---D---EHNRDTDSSEKSDGHTIRVPLMRLT 269 (481)
T ss_pred ------cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc---c---ccccccccccccCCceeeeeeeeee
Confidence 24444444443210 0000000 000000000 0 0000011111100000112455565
Q ss_pred -cCCeEEEEEec--CcEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCc
Q 046828 198 -FRSTVYMVRCS--PRIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLL 273 (627)
Q Consensus 198 -f~s~V~sV~~s--~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v 273 (627)
+.+.|.+..+- .+-++.+ -+.+..+||++|++.++.+.+|... +.-++-.| .
T Consensus 270 gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E-------------LtHcstHp----------t- 325 (481)
T KOG0300|consen 270 GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE-------------LTHCSTHP----------T- 325 (481)
T ss_pred ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh-------------ccccccCC----------c-
Confidence 44566555542 3445554 4667899999999999999887542 00010000 0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCc
Q 046828 274 PNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGR 353 (627)
Q Consensus 274 ~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~ 353 (627)
+.++ +
T Consensus 326 ------------------------------------QrLV-------------v-------------------------- 330 (481)
T KOG0300|consen 326 ------------------------------------QRLV-------------V-------------------------- 330 (481)
T ss_pred ------------------------------------ceEE-------------E--------------------------
Confidence 0000 0
Q ss_pred ccccccCCCCCCeEEEEECCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 354 NASHSSDTDIAGMVVVKDIVS-RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 354 ~~~~~~~~~~dG~V~IwD~~s-~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
..+.|-+.++||+.. ...+..|++|+..|+++.|+-|. .++++|+|.| |+|||+....
T Consensus 331 ------TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrT-vKvWdLrNMR------------- 389 (481)
T KOG0300|consen 331 ------TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRT-VKVWDLRNMR------------- 389 (481)
T ss_pred ------EeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCce-EEEeeecccc-------------
Confidence 134678899999974 35689999999999999999876 5789999987 8999996221
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..+..+| +...++.|+.|.-+..||+--+..-|+|||++-.
T Consensus 390 -----splATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 390 -----SPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred -----Ccceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 1344443 2345899999999999999999999999999754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-10 Score=118.34 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=83.1
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
...|.+.+|.+.+|+.+..+.+|-.+|+||.|+-||.+|+|||.||. |+||++..-... +.......++
T Consensus 100 ~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~lv~a----------~~~~~~~p~~ 168 (476)
T KOG0646|consen 100 TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDLVSA----------DNDHSVKPLH 168 (476)
T ss_pred cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEeeccc----------ccCCCcccee
Confidence 36789999999999999999999999999999999999999999998 799987521110 1111222344
Q ss_pred EEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+ .+|+- .|.|+-..+ -.-+|+++|.|.|+++|++..-
T Consensus 169 ~f-~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 169 IF-SDHTL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred ee-ccCcc-eeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 44 45654 388886655 4568999999999999999764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=109.79 Aligned_cols=117 Identities=16% Similarity=0.255 Sum_probs=77.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEec-cCC-CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCC-CCCCC--c-c----
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFR-AHT-SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKG-RSGSA--S-Q---- 429 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~-aH~-~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~-~~g~~--~-~---- 429 (627)
.++.||.|+|||-.+.+++.+|. +|. +.|.+..|..+|++|.+.+.|.+ +++|.+....... -+|.+ + +
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~l~~YtGAg~tgrq~~rt 356 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRMLKEYTGAGTTGRQKHRT 356 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCceEEEEecCCcccchhhhh
Confidence 35789999999999999999997 885 56999999999999999999976 8999986211000 00110 0 0
Q ss_pred -----------------cc---CCCCce-eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 430 -----------------TY---DWTSSH-VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 430 -----------------~~---~~~~~~-~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+. .|.+.. .++..+--||+.+ +..|.-||.+--+.++|+|-.++.|--
T Consensus 357 qAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 357 QAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-VRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-ceEEEeCCCCCceeeecccceeeeeee
Confidence 00 111110 1111222355543 677777888777888888888887754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-08 Score=103.52 Aligned_cols=103 Identities=8% Similarity=0.090 Sum_probs=67.3
Q ss_pred CCCeEEEEECCC--C--eEEEEeccCC------CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 363 IAGMVVVKDIVS--R--SVISQFRAHT------SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 363 ~dG~V~IwD~~s--~--~~l~~~~aH~------~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
.++.|.+||+.. + +.+..+..+. .....+.|+|||++|+++......|.||++.+.. +.
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-----~~------ 263 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-----SV------ 263 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-----Ce------
Confidence 468899999863 2 2333333221 1234689999999999987655569999986321 10
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGG 483 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg 483 (627)
...+.....|. ....++|+|||++|+++.. +++|.||+++...+
T Consensus 264 ----~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 264 ----LSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred ----EEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 01122222231 2457899999999999886 89999999975443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.8e-10 Score=116.26 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=110.4
Q ss_pred CCCCCCeEEEEECCCC---------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 360 DTDIAGMVVVKDIVSR---------SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~---------~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
+++.|..|+||-+... +-+..+..|+..|+++.|+|+|.+||+|+++|. |.+|......-. ... .+
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~-v~lWk~~~~~~~--~~d--~e 105 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE-VFLWKQGDVRIF--DAD--TE 105 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce-EEEEEecCcCCc--ccc--ch
Confidence 5678999999987543 346778899999999999999999999999998 789975411000 000 01
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSS 510 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~ 510 (627)
.+...+.+.+.+..|||. ..|++++|+||+.++++++.|.++++|++..-.-...+..|..-+.+..++|...+....+
T Consensus 106 ~~~~ke~w~v~k~lr~h~-~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHR-DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hhhCccceEEEEEecccc-cchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc
Confidence 122334467777778864 4699999999999999999999999999987666667778887788888887755444333
Q ss_pred Ccc
Q 046828 511 PSF 513 (627)
Q Consensus 511 ~~~ 513 (627)
.++
T Consensus 185 ~dr 187 (434)
T KOG1009|consen 185 SDR 187 (434)
T ss_pred cCc
Confidence 433
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=116.47 Aligned_cols=248 Identities=10% Similarity=0.068 Sum_probs=150.6
Q ss_pred EEEEEECCCCceEE-EEecCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccce
Q 046828 181 AVRFYSLRSHNYVH-VLRFRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256 (627)
Q Consensus 181 tV~lwdl~t~~~V~-tL~f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~ 256 (627)
.|.+|.+.....++ .+-.+.+|.++..++ .+|+.+ ..+.||||.+.||+.+..+..|-.+ +..
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-------------ITc 128 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS-------------ITC 128 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc-------------eeE
Confidence 58899987666555 445788999999987 566666 6889999999999999888776543 222
Q ss_pred --eeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 257 --MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 257 --iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
|+-.+..|-.++++..|..|-...+-+- .... ..+-+..+.+-. -.++.+..
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a-----------~~~~------------~~~p~~~f~~Ht-lsITDl~i-- 182 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSA-----------DNDH------------SVKPLHIFSDHT-LSITDLQI-- 182 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeeccc-----------ccCC------------CccceeeeccCc-ceeEEEEe--
Confidence 3334467777777666554432210000 0000 000000000000 00111100
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
..|...+...+++.|.+|++||+..+..+..+.- ..+|.+++.+|-++.+..|.++|. |-+++
T Consensus 183 ---------------g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~-I~~~~ 245 (476)
T KOG0646|consen 183 ---------------GSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGK-IFQNL 245 (476)
T ss_pred ---------------cCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcce-EEeee
Confidence 0011111112567999999999999988877763 578999999999999999999997 66666
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc-CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS-AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~-a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
+...... +.|--.+..+.... . ....-|+.. ..|.+++.|-||..|++|+.||+|.||++.......++.
T Consensus 246 ~~~~~~~-~~~v~~k~~~~~~t--~-~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 246 LFKLSGQ-SAGVNQKGRHEENT--Q-INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred hhcCCcc-cccccccccccccc--e-eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 6421100 00000011111111 1 222346665 349999999999999999999999999998765444433
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.5e-09 Score=107.01 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=73.8
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.-+.+.||.+-++|.|+....-...+. .|.+.+.-+++.| .+|-|++.+
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p-------------~~~qlvls~----------------- 154 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHP-------------DRPQLVLSA----------------- 154 (385)
T ss_pred eeEEeecceeEEEEEecchhhhcccee-ccCccchhhhcCC-------------CCCcEEEEe-----------------
Confidence 567778889999999999855333333 3566665555544 345554432
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe----cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCc
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR----FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLE 229 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~----f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e 229 (627)
+.+.+||+|+++++.+|..+. ++..|.+|+++. ++|+++ .+-+|.+|++.+-+
T Consensus 155 ----------------SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 155 ----------------SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred ----------------cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 124789999999999999885 577999999996 566665 67799999998543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-08 Score=110.20 Aligned_cols=249 Identities=12% Similarity=0.138 Sum_probs=161.0
Q ss_pred CCCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 56 GDSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 56 ~~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
++++.+-|.+.|| +..+++..|.++.+.-||+.+.....+ +..-.|++=.+.+.|..
T Consensus 66 g~~drsIE~L~W~----------e~~RLFS~g~sg~i~EwDl~~lk~~~~-~d~~gg~IWsiai~p~~------------ 122 (691)
T KOG2048|consen 66 GPEDRSIESLAWA----------EGGRLFSSGLSGSITEWDLHTLKQKYN-IDSNGGAIWSIAINPEN------------ 122 (691)
T ss_pred cCCCCceeeEEEc----------cCCeEEeecCCceEEEEecccCceeEE-ecCCCcceeEEEeCCcc------------
Confidence 4555567888888 237899999999999999998662222 22223555445544432
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec---CCeEEEEEecC--c
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF---RSTVYMVRCSP--R 210 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f---~s~V~sV~~s~--~ 210 (627)
..++ ++||+ +.+.+.+...++......| .++|.++.+++ .
T Consensus 123 -~~l~-Igcdd---------------------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 123 -TILA-IGCDD---------------------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred -ceEE-eecCC---------------------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 2344 45554 3355555555554444333 57999999998 4
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
.|+.|. ++.|+|||+.++..++.++-.-. +.+-+-..+..+ +.|-.+
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d---------~l~k~~~~iVWS---v~~Lrd-------------------- 215 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLD---------RLSKREPTIVWS---VLFLRD-------------------- 215 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeeccc---------ccccCCceEEEE---EEEeec--------------------
Confidence 467775 45699999999988874321100 000000011110 111110
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+.+ ++++..|.|++
T Consensus 216 --------------------------------------------------------------~tI----~sgDS~G~V~F 229 (691)
T KOG2048|consen 216 --------------------------------------------------------------STI----ASGDSAGTVTF 229 (691)
T ss_pred --------------------------------------------------------------CcE----EEecCCceEEE
Confidence 111 14567899999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
||...+..+..+..|...|.||+-++++.++.+|+.|+++|++.... . +. .+-....|++| .
T Consensus 230 Wd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~-~------~~----------~wv~~~~r~~h-~ 291 (691)
T KOG2048|consen 230 WDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTT-N------KS----------EWVINSRRDLH-A 291 (691)
T ss_pred EcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecC-C------cc----------ceeeeccccCC-c
Confidence 99999999999999999999999999999999999999977666532 1 11 02233333444 3
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..|.+++..++ .|.+++.|.++.+=....
T Consensus 292 hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 292 HDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccceeeeeecc--eEEecceeeEEEEccccc
Confidence 46999999988 888999999988766554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-09 Score=112.54 Aligned_cols=95 Identities=15% Similarity=0.310 Sum_probs=72.8
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
+..|.|.|....+++.+..|+- .+.|+.++|+.||+.|...+.+|. |.|||+... ..++
T Consensus 322 G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~-------------------~~~~ 380 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGE-VYVWNLRQN-------------------SCLH 380 (514)
T ss_pred ccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCce-EEEEecCCc-------------------ceEE
Confidence 3556777777777777777774 467999999999999999999997 799999621 1333
Q ss_pred EEeecCCcCc--EEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 442 KLHRGMTSAV--IQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 442 ~l~rG~t~a~--I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
++ .+... =.++|.|++++|||+||+.|-|-||+.+.
T Consensus 381 rf---~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 381 RF---VDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EE---eecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 33 22222 36788899999999999999999999764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=112.28 Aligned_cols=183 Identities=19% Similarity=0.211 Sum_probs=126.5
Q ss_pred CcEEEEEECCCCceEEEEecC-CeEEEEEec----CcEEEEE-eCCeEEEEeCCCCceeEEEEc--CC-CCCCCCCCCcC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR-STVYMVRCS----PRIVAVG-LAAQIYCFDALTLESKFSVLT--YP-VPHFGGQGTSG 249 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s----~~~LaV~-~~~~I~i~D~~t~e~~~tl~~--~p-~~~~~~~g~~~ 249 (627)
.+.|++||..|++.+..++.. ..+..|+|. +..|.++ .++.|++||+++....-.+.. +| .|
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~--------- 119 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP--------- 119 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc---------
Confidence 377999999999999999854 467777774 4566555 577999999999876544433 32 11
Q ss_pred cccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEE
Q 046828 250 VNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTL 327 (627)
Q Consensus 250 ~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~ 327 (627)
...|+.+. +.+|.+..
T Consensus 120 ----f~~ld~nck~~ii~~GtE---------------------------------------------------------- 137 (376)
T KOG1188|consen 120 ----FICLDLNCKKNIIACGTE---------------------------------------------------------- 137 (376)
T ss_pred ----ceEeeccCcCCeEEeccc----------------------------------------------------------
Confidence 22233321 23333210
Q ss_pred eeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE-EEE-eccCCCCeEEEEECCC-CCEEEEEe
Q 046828 328 SRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV-ISQ-FRAHTSPISALCFDRS-GTLLVTAS 404 (627)
Q Consensus 328 s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~-l~~-~~aH~~~Is~laFspd-G~lLaTaS 404 (627)
-...+-.|.+||.++.++ +.. +..|...|++|+|.|+ -.+|+|||
T Consensus 138 --------------------------------~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS 185 (376)
T KOG1188|consen 138 --------------------------------LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS 185 (376)
T ss_pred --------------------------------cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec
Confidence 012456799999998766 444 4589999999999995 58999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCCCC
Q 046828 405 IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 405 ~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~gg 483 (627)
.||- |+|||++-... .+ ..+..+. +.+.|..|.|..++ +.|.+-+-.+|..+|+++....
T Consensus 186 vDGL-vnlfD~~~d~E----------eD-----aL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 186 VDGL-VNLFDTKKDNE----------ED-----ALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred ccce-EEeeecCCCcc----------hh-----hHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 9996 89999962210 00 0122221 22349999999998 4588889999999999987653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-10 Score=122.32 Aligned_cols=210 Identities=17% Similarity=0.199 Sum_probs=135.4
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEec--CcEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccccee
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCS--PRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPM 257 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s--~~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~i 257 (627)
+-|-.+|.+|++...++.....|++|.|- ..++||+...-+||||= .|..+++|..+... .-+
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~v--------------~rL 215 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIRV--------------ARL 215 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCch--------------hhh
Confidence 44788999999999999999999999994 58999999999999995 46678888775311 111
Q ss_pred eEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 258 AVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 258 Al~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
.+=| -+||.++....++. |-. +-|.+|+.+.... |+...-..
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y------~DV-----------S~GklVa~~~t~~-----------G~~~vm~q-------- 259 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKY------QDV-----------STGKLVASIRTGA-----------GRTDVMKQ-------- 259 (545)
T ss_pred cccchhheeeecccCCceEE------Eee-----------chhhhhHHHHccC-----------Cccchhhc--------
Confidence 1111 24444443322111 100 1122222211111 11100000
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
| .|. . + .| .+...|+|.+|...+.+++..+..|.++|++|+++++|+++||++.|.. ++|||+
T Consensus 260 ----------N-P~N-a-V-ih--~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDl 322 (545)
T KOG1272|consen 260 ----------N-PYN-A-V-IH--LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDL 322 (545)
T ss_pred ----------C-Ccc-c-e-EE--EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeee
Confidence 0 010 0 0 11 3567899999999999999999999999999999999999999999976 899999
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.-. .++...+ ++.....++||..|- ++.+.-.-|+||.=.-.
T Consensus 323 R~~-------------------~ql~t~~---tp~~a~~ls~Sqkgl--LA~~~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 323 RNF-------------------YQLHTYR---TPHPASNLSLSQKGL--LALSYGDHVQIWKDALK 364 (545)
T ss_pred ccc-------------------cccceee---cCCCccccccccccc--eeeecCCeeeeehhhhc
Confidence 611 1333333 233468899998873 33444557899975433
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.5e-08 Score=103.01 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=77.6
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
..+.|+.|++|+ ..+++-... -..|+.|+.|+|.| .||.+...|+ --|.|++. ..
T Consensus 385 T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~--------------------~~ 439 (626)
T KOG2106|consen 385 TCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR-WFVLDTET--------------------QD 439 (626)
T ss_pred eccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce-EEEEeccc--------------------ce
Confidence 467899999999 333333222 25789999999999 9999999998 56888761 13
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
+..++.- ++.+..++|||||.+||++|.|+.|.||.+...|-..
T Consensus 440 lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 440 LVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred eEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 4444432 5679999999999999999999999999999877554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-07 Score=103.39 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=60.1
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
|.++|+.+++. ..+..+.......+|+|||++|+..+.++ ..|.+||+. ++ ....+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~-------~g-------------~~~~Lt 371 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-------TG-------------GVQVLT 371 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC-------CC-------------CeEEeC
Confidence 44456655533 23333344566789999999998876543 236777874 22 122232
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeE---EEEEcCCCCC-eeecccccccc
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTC---HIFVLTPFGG-ETVLQIQNSHV 494 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTv---hIw~i~~~gg-~~~~~~h~s~v 494 (627)
... ...+.+|||||++|+.++.++.. .++++ .|+ ...+..|...+
T Consensus 372 ~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~--~G~~~~~l~~~~~~~ 420 (429)
T PRK03629 372 DTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST--DGRFKARLPATDGQV 420 (429)
T ss_pred CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC--CCCCeEECccCCCCc
Confidence 221 23568899999999999988763 34444 333 33454554433
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=107.33 Aligned_cols=238 Identities=13% Similarity=0.136 Sum_probs=148.6
Q ss_pred CCCCCCeEEEEeccCc-EEEEecCCCC---CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCc
Q 046828 76 SPSSFKHVLLLGYSNG-FQVLDVEDAT---NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSG 151 (627)
Q Consensus 76 ~~~~~~~vl~~Gy~~G-~qVWdv~~~~---~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g 151 (627)
++.+-++++++|...| +-+||+...+ .-.-++..|.++|..+.+.|.-.. .+..
T Consensus 195 HPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s------------~i~s---------- 252 (498)
T KOG4328|consen 195 HPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS------------QIYS---------- 252 (498)
T ss_pred cccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh------------heee----------
Confidence 4445578888888776 9999994211 113456678899999999876421 1211
Q ss_pred ceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC---cEEEEEeCCeEEEEeC
Q 046828 152 LVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP---RIVAVGLAAQIYCFDA 225 (627)
Q Consensus 152 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~---~~LaV~~~~~I~i~D~ 225 (627)
.++++++|+-|++++. +|.+++ -....++++++. .+|++..-+...+||+
T Consensus 253 ------------------------sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 253 ------------------------SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred ------------------------eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEe
Confidence 1246889999988764 344443 123567777764 4455555567889999
Q ss_pred CCCceeEE-EEcCCCCCCCCCCCcCcccccceeeEcC---ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCccc
Q 046828 226 LTLESKFS-VLTYPVPHFGGQGTSGVNIGYGPMAVGP---RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLM 301 (627)
Q Consensus 226 ~t~e~~~t-l~~~p~~~~~~~g~~~~~~~~~~iAl~~---r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v 301 (627)
++....+. ++-|... ++.+++.| -+||
T Consensus 309 R~~~s~~~~~~lh~kK-------------I~sv~~NP~~p~~la------------------------------------ 339 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKKK-------------ITSVALNPVCPWFLA------------------------------------ 339 (498)
T ss_pred ecCCccchhhhhhhcc-------------cceeecCCCCchhee------------------------------------
Confidence 88664322 2223222 22233322 1111
Q ss_pred chhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe----E
Q 046828 302 ARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS----V 377 (627)
Q Consensus 302 ~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~----~ 377 (627)
.++.|++++|||+.... +
T Consensus 340 ----------------------------------------------------------T~s~D~T~kIWD~R~l~~K~sp 361 (498)
T KOG4328|consen 340 ----------------------------------------------------------TASLDQTAKIWDLRQLRGKASP 361 (498)
T ss_pred ----------------------------------------------------------ecccCcceeeeehhhhcCCCCc
Confidence 34578899999997642 3
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
+....+|..+|.+..|||+|-.|+|.+.|.+ |||||.. .- + +-..+.....|-.+..|-. .+..-+|
T Consensus 362 ~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss-~~-----s---a~~~p~~~I~Hn~~t~Rwl---T~fKA~W 428 (498)
T KOG4328|consen 362 FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSS-CI-----S---AKDEPLGTIPHNNRTGRWL---TPFKAAW 428 (498)
T ss_pred ceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecc-cc-----c---ccCCccceeeccCcccccc---cchhhee
Confidence 4455689999999999999888999999987 8999973 00 0 0001111111111111111 1455689
Q ss_pred ccCCCEEEEEeCCCeEEEEEcC
Q 046828 458 SHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~i~ 479 (627)
-||..+++++-....|-||+-+
T Consensus 429 ~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 429 DPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred CCCccEEEEeccCcceeEEcCC
Confidence 9999999999999999998853
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-07 Score=95.47 Aligned_cols=192 Identities=18% Similarity=0.260 Sum_probs=126.3
Q ss_pred EEEEEECCCCceEEEEecC--C--eEEEEEecCc--EEEEE---eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcc
Q 046828 181 AVRFYSLRSHNYVHVLRFR--S--TVYMVRCSPR--IVAVG---LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVN 251 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~--s--~V~sV~~s~~--~LaV~---~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~ 251 (627)
.|-|||+++-+++|+|.-. . .+.++.+|.. +||.= ..+.|++||+.+.+..-+|..|..+
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~----------- 175 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP----------- 175 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-----------
Confidence 3999999999999999743 2 4666666653 77753 3467999999999988888877544
Q ss_pred cccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEee
Q 046828 252 IGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSR 329 (627)
Q Consensus 252 ~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~ 329 (627)
+.++|+++ .+||.++
T Consensus 176 --lAalafs~~G~llATAS------------------------------------------------------------- 192 (391)
T KOG2110|consen 176 --LAALAFSPDGTLLATAS------------------------------------------------------------- 192 (391)
T ss_pred --eeEEEECCCCCEEEEec-------------------------------------------------------------
Confidence 33344433 3444443
Q ss_pred eeccccCCCCCCCccCCCccccCcccccccCCCCCC-eEEEEECCCCeEEEEeccCC--CCeEEEEECCCCCEEEEEeCC
Q 046828 330 YYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAG-MVVVKDIVSRSVISQFRAHT--SPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 330 y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG-~V~IwD~~s~~~l~~~~aH~--~~Is~laFspdG~lLaTaS~d 406 (627)
+.| .|||+++.+++.+..|+.-. ..|.+|+|+||+++|+..|..
T Consensus 193 ---------------------------------eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 193 ---------------------------------EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred ---------------------------------cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence 233 47999999999999998654 358999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCc-------------cccCCCCceeEEEEEeecCCc-----CcE-EEEEEc--cCCCEEE
Q 046828 407 GNNINIFRIMPSSSKGRSGSAS-------------QTYDWTSSHVHLYKLHRGMTS-----AVI-QDICFS--HYSQWIA 465 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~-------------~~~~~~~~~~~l~~l~rG~t~-----a~I-~sIaFS--pDg~~La 465 (627)
+| |+||.+....... ...+. .++.+ ..+...+...|-... +.. ..++|+ ++...+.
T Consensus 240 eT-VHiFKL~~~~~~~-~~~p~~~~~~~~~~sk~~~sylp-s~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 240 ET-VHIFKLEKVSNNP-PESPTAGTSWFGKVSKAATSYLP-SQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred Ce-EEEEEecccccCC-CCCCCCCCcccchhhhhhhhhcc-hhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 98 8999986332110 01000 00000 000011111111111 111 334555 4788999
Q ss_pred EEeCCCeEEEEEcCCCC
Q 046828 466 IVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 466 s~S~dgTvhIw~i~~~g 482 (627)
+++.||.+..|.+++..
T Consensus 317 vas~dG~~y~y~l~~~~ 333 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPKE 333 (391)
T ss_pred EEEcCCeEEEEEcCCCC
Confidence 99999999999999863
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.3e-07 Score=93.57 Aligned_cols=228 Identities=18% Similarity=0.260 Sum_probs=150.6
Q ss_pred eEEEEec-cCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 82 HVLLLGY-SNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 82 ~vl~~Gy-~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.++..+. ++.+++||+.........+..|...|+.+.+.|.. ..++... .
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~~~--~-------------- 175 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-------------KLLASGS--S-------------- 175 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-------------CEEEecC--C--------------
Confidence 3444455 77899999997233356666777777877776543 2332210 0
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--c-EEEE-EeCCeEEEEeCCCCceeE-EE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--R-IVAV-GLAAQIYCFDALTLESKF-SV 234 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~-~LaV-~~~~~I~i~D~~t~e~~~-tl 234 (627)
.++.+++|+++++..+..+.. ...|..+++++ + +++. +.++.|.+||..+++.+. .+
T Consensus 176 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~ 238 (466)
T COG2319 176 -----------------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238 (466)
T ss_pred -----------------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec
Confidence 136799999999999999985 56899999987 3 4444 356689999988777665 34
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
..|... . +. .+.....
T Consensus 239 ~~~~~~--------------~-~~------~~~~~~~------------------------------------------- 254 (466)
T COG2319 239 SGHSDS--------------V-VS------SFSPDGS------------------------------------------- 254 (466)
T ss_pred CCCCcc--------------e-eE------eECCCCC-------------------------------------------
Confidence 443321 0 10 1111100
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE-EEEeccCCCCeEEEEE
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV-ISQFRAHTSPISALCF 393 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~-l~~~~aH~~~Is~laF 393 (627)
.+ ..+..++.+++||+..... +..+..|..+|.++.|
T Consensus 255 -----------~~-------------------------------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (466)
T COG2319 255 -----------LL-------------------------------ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292 (466)
T ss_pred -----------EE-------------------------------EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence 00 0235789999999987664 5555788999999999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE-eecCCcCcEEEEEEccCCCEEEEE-eCCC
Q 046828 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL-HRGMTSAVIQDICFSHYSQWIAIV-SSRG 471 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l-~rG~t~a~I~sIaFSpDg~~Las~-S~dg 471 (627)
+|++..+++++.++. +++||+. . .. ..... ..++.. .|..+.|++++..++.+ ..|+
T Consensus 293 ~~~~~~~~~~~~d~~-~~~~~~~-~------~~------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 293 SPDGKLLASGSSDGT-VRLWDLE-T------GK------------LLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred CCCCCEEEEeeCCCc-EEEEEcC-C------Cc------------eEEEeeecccCC-ceEEEEECCCCCEEEEeecCCC
Confidence 999999999999966 8999875 1 11 12222 134433 58999994343566666 6889
Q ss_pred eEEEEEcCCCC
Q 046828 472 TCHIFVLTPFG 482 (627)
Q Consensus 472 TvhIw~i~~~g 482 (627)
.+.+|++....
T Consensus 352 ~~~~~~~~~~~ 362 (466)
T COG2319 352 TIRLWDLRTGK 362 (466)
T ss_pred cEEeeecCCCc
Confidence 99999987654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-08 Score=109.66 Aligned_cols=289 Identities=18% Similarity=0.177 Sum_probs=171.7
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee-cc
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH-VG 158 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~-~~ 158 (627)
+.-+..++.++.++||-+.++-.++.+. -|+.|++|.+.|.+.. ++|||..++. .-.+.+. ++
T Consensus 412 G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~-----------~vLAvA~~~~---~~ivnp~~G~ 475 (733)
T KOG0650|consen 412 GEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDL-----------CVLAVAVGEC---VLIVNPIFGD 475 (733)
T ss_pred cceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCc-----------eeEEEEecCc---eEEeCccccc
Confidence 3556666667779999999977555443 4789999999988743 7888765322 0000000 00
Q ss_pred C--ccc--ccCCCCCCCCCCCCcCCcEEEEEECCC---Cc-eE-EEEecCCeEEEEEecC--cEEEEE--e--CCeEEEE
Q 046828 159 R--DGL--VRDGYDEPQPGNVAMSPTAVRFYSLRS---HN-YV-HVLRFRSTVYMVRCSP--RIVAVG--L--AAQIYCF 223 (627)
Q Consensus 159 ~--~~~--~~~g~~~~~~~~~~~~~~tV~lwdl~t---~~-~V-~tL~f~s~V~sV~~s~--~~LaV~--~--~~~I~i~ 223 (627)
. .+. ...+.- | +..+.+..|-.|.-.. ++ -| -++++..+|..|.+.+ ++|++. . ...|.|+
T Consensus 476 ~~e~~~t~ell~~~-~---~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 476 RLEVGPTKELLASA-P---NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred hhhhcchhhhhhcC-C---CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 0 000 000000 0 1233456788897542 11 13 3567888999999986 677654 3 4469999
Q ss_pred eCCCCcee--E-EEEc-------CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 224 DALTLESK--F-SVLT-------YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 224 D~~t~e~~--~-tl~~-------~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
++...... | ...| ||.. .-+ ++|..-+- .+.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~--------------p~l-----fVaTq~~v---RiY----------------- 592 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSK--------------PYL-----FVATQRSV---RIY----------------- 592 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCC--------------ceE-----EEEeccce---EEE-----------------
Confidence 98754322 2 1122 3321 001 22333210 000
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
.++ -.+..|++..|.+++..+..+ |.|. +...++.|+.+..+|+.
T Consensus 593 -----dL~---kqelvKkL~tg~kwiS~msih----------p~GD-----------------nli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 593 -----DLS---KQELVKKLLTGSKWISSMSIH----------PNGD-----------------NLILGSYDKKMCWFDLD 637 (733)
T ss_pred -----ehh---HHHHHHHHhcCCeeeeeeeec----------CCCC-----------------eEEEecCCCeeEEEEcc
Confidence 000 123345566665555433211 1110 11235789999999987
Q ss_pred CC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC--CCceeEEEEEeecCCcC
Q 046828 374 SR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW--TSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 374 s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~--~~~~~~l~~l~rG~t~a 450 (627)
-. ++..+++-|...|..++|++.=-++|+||+||+ +.||--+-.. |+ ....+.+.+| |||..-
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~VY~------------Dl~qnpliVPlK~L-~gH~~~ 703 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMVYN------------DLLQNPLIVPLKRL-RGHEKT 703 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeeeeeh------------hhhcCCceEeeeec-cCceee
Confidence 54 678889999999999999999999999999999 5777433110 11 1112344444 676532
Q ss_pred ---cEEEEEEccCCCEEEEEeCCCeEEEE
Q 046828 451 ---VIQDICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 451 ---~I~sIaFSpDg~~Las~S~dgTvhIw 476 (627)
.|.+..|.|.--||.+++.||||++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 28899999999999999999999998
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-09 Score=103.90 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=76.4
Q ss_pred CCCCCeEEEEECCCC---eEEEEeccCCCCeEEEEECCC---C-----------CEEEEEeCCCCEEEEEeCCCCCCCCC
Q 046828 361 TDIAGMVVVKDIVSR---SVISQFRAHTSPISALCFDRS---G-----------TLLVTASIHGNNINIFRIMPSSSKGR 423 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~---~~l~~~~aH~~~Is~laFspd---G-----------~lLaTaS~dGt~I~Vwdi~p~~~~~~ 423 (627)
++.||.|.|.+..+. ..-..+.+|+-.|+++++.|. | +.||+|.-|.. |+||+..
T Consensus 122 asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~------- 193 (299)
T KOG1332|consen 122 ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFD------- 193 (299)
T ss_pred eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc-eeeeecC-------
Confidence 456777777766543 223456799999999999998 7 77999999976 8999975
Q ss_pred CCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC----CEEEEEeCCCeEEEEEcCC
Q 046828 424 SGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS----QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 424 ~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg----~~Las~S~dgTvhIw~i~~ 480 (627)
+++ +.+-+..+||+. .|.++||.|.- ..||++|.||+|.||....
T Consensus 194 ~~~-----------w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 194 SDS-----------WKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred Ccc-----------hhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 222 334443578764 59999999954 5899999999999999873
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-08 Score=100.37 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=75.2
Q ss_pred CCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCC--CCCCCCccccCCCC
Q 046828 360 DTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSK--GRSGSASQTYDWTS 435 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~--~~~g~~~~~~~~~~ 435 (627)
+++.||.|+|||+++- .++..+.+|...|.++.|+|. .++|.|++.|-. +.+|........ -..+.-.++.....
T Consensus 232 t~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~svSSE~qi~~~~dese~e~~d 310 (370)
T KOG1007|consen 232 TCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCASSVSSEQQIEFEDDESESEDED 310 (370)
T ss_pred EcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEeccccccccccccccccccCcchh
Confidence 3568999999999764 578999999999999999996 678899999987 678864311000 00000000000000
Q ss_pred ceeEEEEEeecC------CcCcEEEEEEccCCCEE-EEEeCCCeEEEEEcCCC
Q 046828 436 SHVHLYKLHRGM------TSAVIQDICFSHYSQWI-AIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 436 ~~~~l~~l~rG~------t~a~I~sIaFSpDg~~L-as~S~dgTvhIw~i~~~ 481 (627)
...+...|..|. ....|++++||.-.-|+ |+-|.||.+.|=.+.++
T Consensus 311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred hHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 001111122211 12349999999866665 67788999988777543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=108.22 Aligned_cols=182 Identities=16% Similarity=0.321 Sum_probs=128.5
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
..++.+|..+.++|||+. .+-+.+.+..|...|.+|.+.-+ | -+||.|. + +
T Consensus 92 ~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~-------D------eyiAsvs-~----g---------- 142 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNT-------D------EYIASVS-D----G---------- 142 (673)
T ss_pred eeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCC-------c------ceeEEec-c----C----------
Confidence 556778888889999999 46677777778888877776532 2 3566553 1 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC--eEEEEEecC--cE-EEEEe-CCeEEEEeCCCCceeEEE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS--TVYMVRCSP--RI-VAVGL-AAQIYCFDALTLESKFSV 234 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s--~V~sV~~s~--~~-LaV~~-~~~I~i~D~~t~e~~~tl 234 (627)
+-|.|-.++|+..-.++..++ .|+-+++++ |. |.++. ++.|++||+..+...+..
T Consensus 143 -------------------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 143 -------------------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred -------------------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 238888899988888888764 677788876 44 44444 557999999988877665
Q ss_pred E-cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 235 L-TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 235 ~-~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
. -|..|. +-+.+++.. +-++
T Consensus 204 ~~~HsAP~--------------------~gicfspsn---------------------------e~l~------------ 224 (673)
T KOG4378|consen 204 SEAHSAPC--------------------RGICFSPSN---------------------------EALL------------ 224 (673)
T ss_pred hhhccCCc--------------------CcceecCCc---------------------------cceE------------
Confidence 4 355541 112223211 1000
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
.+.+.|..|.+||+.+.+....+.. ..|.++|+|
T Consensus 225 ---------------------------------------------vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf 258 (673)
T KOG4378|consen 225 ---------------------------------------------VSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAF 258 (673)
T ss_pred ---------------------------------------------EEecccceEEEeecccccccceeee-cCCcceeee
Confidence 0235788999999998877666653 569999999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCC
Q 046828 394 DRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.++|.+|+.|+.+|. |.-||+.
T Consensus 259 ~~~G~~L~aG~s~G~-~i~YD~R 280 (673)
T KOG4378|consen 259 SECGTYLCAGNSKGE-LIAYDMR 280 (673)
T ss_pred cCCceEEEeecCCce-EEEEecc
Confidence 999999999999998 6789986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.3e-07 Score=99.20 Aligned_cols=94 Identities=11% Similarity=0.136 Sum_probs=57.4
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
.|.++|+.+++. ..+..+...+...+|+|||+.|+..+.++ ..|.+||+. .+ ....+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~-------~~-------------~~~~l 373 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD-------GS-------------GERIL 373 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC-------CC-------------ceEec
Confidence 577778766543 33333445566788999999999887643 235666653 11 11222
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCe----EEEEEcCCCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGT----CHIFVLTPFGG 483 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgT----vhIw~i~~~gg 483 (627)
..+. .+.+++|||||++|+..+.++. ..||.++..++
T Consensus 374 t~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 374 TSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred cCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 2222 3678999999999998776431 34555544443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=124.35 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=78.9
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCC--CeEEEEECCCC-CEEEEEeCCC--CEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTS--PISALCFDRSG-TLLVTASIHG--NNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~--~Is~laFspdG-~lLaTaS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
++..+|.+.|||++..+++..|.-|.. .++.|+|+|++ +.|++|++|- -+|.+||++ ...
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR-~as-------------- 243 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR-FAS-------------- 243 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc-ccC--------------
Confidence 456788999999999998888887754 48899999986 5677777764 369999986 221
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccC-CCEEEEEeCCCeEEEEEcCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHY-SQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpD-g~~Las~S~dgTvhIw~i~~ 480 (627)
..+..+ +||..+ |.+++|++. .++|++++.|+.|.+|+.+.
T Consensus 244 ---sP~k~~-~~H~~G-ilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 244 ---SPLKIL-EGHQRG-ILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ---Cchhhh-cccccc-eeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 123333 677654 999999995 49999999999999999886
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=112.52 Aligned_cols=102 Identities=13% Similarity=0.234 Sum_probs=76.4
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+.+|-+|+|||+.+.+....|.+|+..|..++|||||+++||...||+ ||||+-. ++. ..
T Consensus 695 ~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Pr-------s~e-----------~p 755 (1012)
T KOG1445|consen 695 VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPR-------SRE-----------QP 755 (1012)
T ss_pred hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCC-------CCC-----------Cc
Confidence 3468899999999999999999999999999999999999999999998 7999853 111 13
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCC----eEEEEEcCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG----TCHIFVLTPF 481 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg----TvhIw~i~~~ 481 (627)
+|+- .|....+=-.|.|--||++|++.+.|. -|.+|+-...
T Consensus 756 v~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 756 VYEG-KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred cccC-CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 3332 121111224577999999999988765 3556665443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=107.40 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=75.2
Q ss_pred CCeEEEEECCCCeE-EEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSV-ISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~-l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
=|...+||+.++.. ...++-|...|..|+|+|- -.+|||||.|+| .+|||+..- .+. .+. .++
T Consensus 300 ~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-----~~K--------~sp-~ls 364 (498)
T KOG4328|consen 300 VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-----RGK--------ASP-FLS 364 (498)
T ss_pred ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-----cCC--------CCc-cee
Confidence 35788999988654 7778889999999999995 568999999998 699998622 111 000 233
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+. |+ -.|.+..|||++--|++.+.|.+|+||+..
T Consensus 365 t~~--Hr-rsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLP--HR-RSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccc--cc-ceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 331 22 249999999988889999999999999985
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-06 Score=89.53 Aligned_cols=119 Identities=17% Similarity=0.258 Sum_probs=78.7
Q ss_pred CCCe-EEEEECCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC-CCccccC-C-C--
Q 046828 363 IAGM-VVVKDIVSRSVISQFRAH--TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG-SASQTYD-W-T-- 434 (627)
Q Consensus 363 ~dG~-V~IwD~~s~~~l~~~~aH--~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g-~~~~~~~-~-~-- 434 (627)
..|+ |||||..+++.+..|+.- ...|.+|+|||++.+||.+|++|| ++||.++..... ... +....-. + +
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~-~~~~SSl~~~~~~lpky 278 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENT-EDESSSLSFKRLVLPKY 278 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCC-ccccccccccccccchh
Confidence 4444 799999999999999843 356999999999999999999999 799998743211 010 0000000 0 0
Q ss_pred -CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 435 -SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 435 -~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
.+.|-+.+++- ......-++|-.+..-+++...||+-+-+.+.+..+..
T Consensus 279 ~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~g~ 328 (346)
T KOG2111|consen 279 FSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPKNGGE 328 (346)
T ss_pred cccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccccccc
Confidence 01122222221 12235678999997778888889999988888764443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=107.06 Aligned_cols=113 Identities=17% Similarity=0.262 Sum_probs=83.7
Q ss_pred CCCCCCeEEEEECCCCeE---EEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 360 DTDIAGMVVVKDIVSRSV---ISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~---l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
+++..+.|++|...++.- ..-|.+|+..|-.|+|||. ..+||++|-||+ |||||+...+..
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~-------------- 293 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKK-------------- 293 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCcc--------------
Confidence 456677899998887642 2346779999999999996 468999999998 899999722110
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee---ecccccc
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET---VLQIQNS 492 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~---~~~~h~s 492 (627)
..+.. ..| ++.|+-|+|+.+-.+||+|++|||++||+|..+.... .+..|..
T Consensus 294 --~~~~~--kAh-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 294 --AAVST--KAH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred --ceeEe--ecc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 02222 223 3479999999999999999999999999998775431 3445543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-08 Score=102.65 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=83.9
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
++.-|.|+|.|+.+++....+.+|...|+.|.|.|+- ++|++||.|-. ||+|+|.. . .+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-vRlwnI~~-------~------------~C 170 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-VRLWNIQT-------D------------VC 170 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce-EEEEeccC-------C------------eE
Confidence 4577999999999999999999999999999999975 79999999965 89999972 2 13
Q ss_pred EEEE--eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 440 LYKL--HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 440 l~~l--~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+.-+ ..||. ..|.++.|++||.+||+++.|-++.+|+++..
T Consensus 171 v~VfGG~egHr-deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 171 VAVFGGVEGHR-DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred EEEeccccccc-CcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 3333 23442 35999999999999999999999999999854
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.3e-08 Score=107.80 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCeEEEEECC-CCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIV-SRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.|.+|+||... ...++..+..+...|.+++|||.- ..+|++..+|+ |.|||+..... + .+
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~----~-------------Pv 479 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDE----E-------------PV 479 (555)
T ss_pred ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhcccc----C-------------Cc
Confidence 39999999988 778888999999999999999964 78999999998 89999963221 1 11
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.....+ ......+.|+++|+.||+|...|++|+|++.+
T Consensus 480 ~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 480 LSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 111122 23467888999999999999999999999964
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=105.67 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=79.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+++.|.+|.|||+.+++.+.++. |..-|.+++|+.||.+|+|++.|.. |||||.. +|. .
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr-------~~~------------~ 207 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPR-------RGT------------V 207 (472)
T ss_pred hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCC-------CCc------------E
Confidence 35678999999999999999988 9999999999999999999999987 8999975 342 3
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeC---CCeEEEEEcCCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSS---RGTCHIFVLTPFGG 483 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~---dgTvhIw~i~~~gg 483 (627)
+.+. .+|..++-+..-|-.+|+.+-+|-+ +..+-||+-+....
T Consensus 208 v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 208 VSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred eeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccC
Confidence 3433 5666667777889999994444433 45678887654433
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-08 Score=98.05 Aligned_cols=175 Identities=19% Similarity=0.324 Sum_probs=115.0
Q ss_pred CcEEEEEECCCCce--EEE--EecCCeEEEEEecC---cEEEE-EeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCc
Q 046828 179 PTAVRFYSLRSHNY--VHV--LRFRSTVYMVRCSP---RIVAV-GLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 179 ~~tV~lwdl~t~~~--V~t--L~f~s~V~sV~~s~---~~LaV-~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
++|..|||++++.. |+| +-+..+|++|+|.+ +++|+ |.++.|++||++.++.-..+-..|.|.
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~--------- 242 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS--------- 242 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC---------
Confidence 58899999999843 554 34778999999986 56664 567799999999987544443333320
Q ss_pred ccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 251 NIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 251 ~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
...+ -|+....++- .++
T Consensus 243 ---~pLl-----RLswnkqDpn---------------------------ymA---------------------------- 259 (364)
T KOG0290|consen 243 ---TPLL-----RLSWNKQDPN---------------------------YMA---------------------------- 259 (364)
T ss_pred ---Ccce-----eeccCcCCch---------------------------HHh----------------------------
Confidence 1111 1222221110 000
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCC
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDR-SGTLLVTASIHGN 408 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt 408 (627)
+-+.....|.|.|++.. .+++.++.|...|+.|+|.| +...|+||++|-.
T Consensus 260 ----------------------------Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 260 ----------------------------TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred ----------------------------hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 01124457889998864 67999999999999999999 5678999999976
Q ss_pred EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCC
Q 046828 409 NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSR 470 (627)
Q Consensus 409 ~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~d 470 (627)
.-|||+...+.. .+ ......|.. .+.|..|.|++ ...||+++..+
T Consensus 312 -aliWDl~q~~~~--~~---------~dPilay~a-----~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 312 -ALIWDLQQMPRE--NG---------EDPILAYTA-----GGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred -EEEEeccccccc--CC---------CCchhhhhc-----cceeeeeeecccCCCEEEEEecC
Confidence 789999632210 01 001122321 24699999995 78899998755
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-09 Score=114.31 Aligned_cols=98 Identities=21% Similarity=0.300 Sum_probs=81.7
Q ss_pred CCCCCeEEEEECCCC-------eEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 361 TDIAGMVVVKDIVSR-------SVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~-------~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
+..||.|+||.+..+ ++-..+.+|...|.+|.|+|= ...||++|.|-| |++||+. ++
T Consensus 646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~-------~~------- 710 (1012)
T KOG1445|consen 646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLA-------NA------- 710 (1012)
T ss_pred cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehh-------hh-------
Confidence 468999999998754 456788999999999999994 578999999988 8999996 22
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+|-...||+. .|.+|+|||||+.+|+...||+++||+-..
T Consensus 711 ------~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 711 ------KLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred ------hhhheeccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 33433468875 599999999999999999999999998654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-08 Score=106.70 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=88.9
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
....|.|+++...+...-|+--.+-|.++.|.|.--+|..|+.. .|||||+. . . ..+.+
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~-k------q------------elvKk 602 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLS-K------Q------------ELVKK 602 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--ceEEEehh-H------H------------HHHHH
Confidence 44579999999888778887777789999999999999999876 38999985 1 1 13344
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe-eecccccccccCCCCCCCccCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE-TVLQIQNSHVDRPTLSPVLSVP 506 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~-~~~~~h~s~v~~~~~~p~~~~~ 506 (627)
|..|.. .|..++.+|.|.-|++++.|+.+-.||+.-...+ .+++.|...+....+-+..+|+
T Consensus 603 L~tg~k--wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 603 LLTGSK--WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred HhcCCe--eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee
Confidence 444432 4999999999999999999999999999865433 3566776554443333333443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-08 Score=100.39 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=55.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
.|+-+..-||++.||||+=||+ ||||.-. +.. .+.-|. -| .+.|++++|+||...+|.
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~R-iRVyswr-------tl~------------pLAVLk-yH-sagvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHR-IRVYSWR-------TLN------------PLAVLK-YH-SAGVNAVAFSPDCELMAA 310 (323)
T ss_pred CccceEEccCCcEEeecccCCc-EEEEEec-------cCC------------chhhhh-hh-hcceeEEEeCCCCchhhh
Confidence 3667778899999999999998 8999875 221 222221 12 367999999999999999
Q ss_pred EeCCCeEEEEEc
Q 046828 467 VSSRGTCHIFVL 478 (627)
Q Consensus 467 ~S~dgTvhIw~i 478 (627)
+|.|++|-+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-06 Score=97.55 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=56.4
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
.|.++|+.+++.. .+..+......++|+|||+.|+..+.++ ..|.+||+. ++. ...+
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~-------~g~-------------~~~L 375 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS-------TGS-------------VRTL 375 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC-------CCC-------------eEEC
Confidence 3555666555432 2222223345689999999999876543 247888875 221 2233
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCCCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTPFGG 483 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~~gg 483 (627)
..+. .....+|+|||++|+..+.+ |.-+||.+...++
T Consensus 376 t~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 376 TPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 3332 24567999999999887764 4555665555444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=100.82 Aligned_cols=130 Identities=19% Similarity=0.257 Sum_probs=96.6
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEE-EeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLL-LGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~-~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
...|.|.|+...|+++ .+.||. .+.|+++.+||++.++ ....+..|.+.|.++++-|.-
T Consensus 239 ~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k~Vq~l~wh~~~------------- 298 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVDTGK-PKSSITHHGKKVQTLEWHPYE------------- 298 (463)
T ss_pred cccchHHHHHHHhccc------cceeEEecCCCceEEEEEcCCCC-cceehhhcCCceeEEEecCCC-------------
Confidence 3467888888888764 366766 5558899999999855 567777889999999987653
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC-CceEEEEecCCeEEEEEecC---cEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS-HNYVHVLRFRSTVYMVRCSP---RIV 212 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t-~~~V~tL~f~s~V~sV~~s~---~~L 212 (627)
|.+++.+ ..+++|.++|+|. .+.=...+|.+.|-.|.+++ ...
T Consensus 299 p~~LLsG---------------------------------s~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f 345 (463)
T KOG0270|consen 299 PSVLLSG---------------------------------SYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSF 345 (463)
T ss_pred ceEEEec---------------------------------cccceEEeeeccCccccCceEEeccceEEEEecCCCceeE
Confidence 5544321 1358899999995 33445678999999999976 455
Q ss_pred EEEe-CCeEEEEeCCCC-ceeEEEEcCCCC
Q 046828 213 AVGL-AAQIYCFDALTL-ESKFSVLTYPVP 240 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~-e~~~tl~~~p~~ 240 (627)
.+++ ++.+|-||++.. +.++++..|..+
T Consensus 346 ~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred EEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 5554 568999999986 788888887553
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-07 Score=103.35 Aligned_cols=103 Identities=20% Similarity=0.238 Sum_probs=72.7
Q ss_pred eEEEEeccCCCCeEEEEECCCCC---EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC---C--CCceeEEE------
Q 046828 376 SVISQFRAHTSPISALCFDRSGT---LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD---W--TSSHVHLY------ 441 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~---lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~---~--~~~~~~l~------ 441 (627)
+.++.+.+|+..|..|+|...|. +||++|.|.. ||||.+.+.... ++-..+.. . ......+.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y-IRiW~i~~~~~~---~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY-IRIWRIVLGDDE---DSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE-EEEEEEEecCCc---cccccccccccccCCceeeeeeeEEEEE
Confidence 56889999999999999998766 8999999965 899998643311 00000000 0 00111121
Q ss_pred ---EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 442 ---KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 442 ---~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.+.-||+. .|+++-|.|++..|.++|.|.|+.||.-....|
T Consensus 258 s~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG 301 (764)
T KOG1063|consen 258 SFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTG 301 (764)
T ss_pred ehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccc
Confidence 22348865 599999999999999999999999999776643
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=103.12 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=68.8
Q ss_pred CCCeEEEEECCCC--eEEEEeccCCCC--eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIVSR--SVISQFRAHTSP--ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~s~--~~l~~~~aH~~~--Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.|+.|..||+.+. .++..|.+|... -..=..+|||.+|++|+.|++ ..||.+. ++..
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~-ayiw~vs-~~e~----------------- 351 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ-AYIWVVS-SPEA----------------- 351 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc-eeeeeec-CccC-----------------
Confidence 4888999998765 345555555321 112247999999999999998 6999985 3221
Q ss_pred EEEEEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 439 HLYKLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
--.+.-||+. .|.+++|.| ++. +|++++|-+++||++..+...
T Consensus 352 -~~~~l~Ght~-eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 352 -PPALLLGHTR-EVTTVRWLPSATTP-VATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred -ChhhhhCcce-EEEEEeeccccCCC-ceeeccCcceEEEeccCchhh
Confidence 1112357765 489999977 555 455599999999999765433
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=103.09 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=79.7
Q ss_pred CCCCCeEEEEECCCCeE------EEE--eccC---CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc
Q 046828 361 TDIAGMVVVKDIVSRSV------ISQ--FRAH---TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~------l~~--~~aH---~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
+..|+.|+|||+..... +.. +.-| .-.+.+|..+..|++|.....|++ |..|++. .... +
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~-s~s~---s---- 306 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMR-SLSI---S---- 306 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEecc-ccCc---C----
Confidence 44699999999987532 111 2223 224888999999998877777887 8999985 2111 0
Q ss_pred ccCCCCceeEEEEEeecCCcCcE-EEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee-ecccccccccCCCCCC
Q 046828 430 TYDWTSSHVHLYKLHRGMTSAVI-QDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET-VLQIQNSHVDRPTLSP 501 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~t~a~I-~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~-~~~~h~s~v~~~~~~p 501 (627)
.+. ++.|+-...+ ..-..|||+++|++++.|+-..||.++.....+ .+..|..+|....+.|
T Consensus 307 ---------P~~-~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 307 ---------PVA-EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred ---------chh-hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 111 1123222221 223579999999999999999999998876555 4556766665544433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.1e-06 Score=91.29 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=47.3
Q ss_pred EEEEECCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 389 SALCFDRSGTLLVTASIHGN--NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 389 s~laFspdG~lLaTaS~dGt--~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
...+|+|||++||..+.++. .|.+||+. ++. ...+..+ ......+|+|||++|+.
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~-------~g~-------------~~~lt~~---~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLA-------TGQ-------------VTALTDT---TRDESPSFAPNGRYILY 387 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECC-------CCC-------------eEEccCC---CCccCceECCCCCEEEE
Confidence 45689999999998876652 47888875 221 2222222 12467899999999998
Q ss_pred EeCCC-eEEEEEcCCCCC
Q 046828 467 VSSRG-TCHIFVLTPFGG 483 (627)
Q Consensus 467 ~S~dg-TvhIw~i~~~gg 483 (627)
.+.++ .-+|+-+...+.
T Consensus 388 ~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 388 ATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred EEecCCCEEEEEEECCCC
Confidence 88655 445666554443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=99.30 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=61.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
..|++|+.++||+++|-|+.+|. |-|++.. .. ++++-.++-|- ..|++|.|+||.++++
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~-~l------------------q~~~~vk~aH~-~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGS-VAIYDAK-SL------------------QRLQYVKEAHL-GFVTGLTFSPDSRYLA 340 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCc-EEEEEec-ee------------------eeeEeehhhhe-eeeeeEEEcCCcCccc
Confidence 46999999999999999999998 6899875 21 24555555443 3599999999999999
Q ss_pred EEeCCCeEEEEEcCC
Q 046828 466 IVSSRGTCHIFVLTP 480 (627)
Q Consensus 466 s~S~dgTvhIw~i~~ 480 (627)
..|.+.+++|..|.-
T Consensus 341 svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 341 SVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccCCceeEEEEee
Confidence 999999999999864
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.9e-08 Score=109.02 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=78.1
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLL-VTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lL-aTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+..+-.+.+|++.++..++.+.+|..++..|.|+|=...+ .+|..||. +.|||+- .|. ..+
T Consensus 371 ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~-------eg~----------pik 432 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIW-------EGI----------PIK 432 (1113)
T ss_pred eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc-eEeeecc-------cCC----------cce
Confidence 3456678899999999999999999999999999966555 46889998 6899995 232 124
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.|. .|+ .++.+-+||+||+.++...+.|-+.|+....
T Consensus 433 ~y~--~gh--~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 433 HYF--IGH--GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eee--ccc--ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 443 453 4689999999999999999999999887644
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-08 Score=99.90 Aligned_cols=121 Identities=20% Similarity=0.336 Sum_probs=83.3
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc--
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS-- 436 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~-- 436 (627)
+.+..+|.|.|||+.+...-..|.+|..||.+|+||+||++|+|+|.|-. |.+||+. .|+..+..-.++.
T Consensus 39 AvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s-i~lwDl~-------~gs~l~rirf~spv~ 110 (405)
T KOG1273|consen 39 AVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS-IKLWDLL-------KGSPLKRIRFDSPVW 110 (405)
T ss_pred eeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce-eEEEecc-------CCCceeEEEccCccc
Confidence 35678999999999999988899999999999999999999999999975 8999996 2332210000000
Q ss_pred ---------eeE----------EEEEee-----------cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeee
Q 046828 437 ---------HVH----------LYKLHR-----------GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 437 ---------~~~----------l~~l~r-----------G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~ 486 (627)
... +..+-. |.-+..-....|.+-|+++.+|+.+|.++|++.++......
T Consensus 111 ~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas 190 (405)
T KOG1273|consen 111 GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS 190 (405)
T ss_pred eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee
Confidence 000 011100 00000011224778899999999999999999988755443
Q ss_pred c
Q 046828 487 L 487 (627)
Q Consensus 487 ~ 487 (627)
+
T Consensus 191 ~ 191 (405)
T KOG1273|consen 191 F 191 (405)
T ss_pred e
Confidence 3
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-07 Score=93.04 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=36.2
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+.+..|..|..+|-.++|+-.|+.|++.++||. +|+|...
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWkan 318 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWKAN 318 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehhhh
Confidence 457788999999999999999999999999998 7999753
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-06 Score=97.40 Aligned_cols=99 Identities=19% Similarity=0.316 Sum_probs=77.2
Q ss_pred CCCCCCeEEEEE-CC-CC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 360 DTDIAGMVVVKD-IV-SR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 360 ~~~~dG~V~IwD-~~-s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
++..||.|.||. +. ++ .....|.-|..+|.+|+|++||.+|.+|+..|- +-+|++. ++.
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~-------T~~--------- 284 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLE-------TGK--------- 284 (792)
T ss_pred EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceE-EEEEeec-------CCC---------
Confidence 466789999995 33 12 345678889999999999999999999999995 7899986 221
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+.|-++ .+.|..|.+|||+...+..-.|..||+-....-
T Consensus 285 -kqfLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 285 -KQFLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred -ccccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 0122221 357999999999999999999999999987543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-06 Score=85.78 Aligned_cols=90 Identities=17% Similarity=0.347 Sum_probs=69.3
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH---GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d---Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+..|.|||++ .+.+..|. ..++..|.|||+|++||+|+.+ |. |.+||+. . . ..
T Consensus 81 ~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~-~------~------------~~ 137 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVR-K------K------------KK 137 (194)
T ss_pred CCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECC-C------C------------EE
Confidence 45689999997 66677775 5678999999999999999754 55 8999986 1 1 24
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeC------CCeEEEEEcC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSS------RGTCHIFVLT 479 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~------dgTvhIw~i~ 479 (627)
+.+.. ...+..++|||||++|++++. |..++||+..
T Consensus 138 i~~~~----~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE----HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc----cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 44432 223789999999999999875 7889999974
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.1e-08 Score=105.74 Aligned_cols=110 Identities=22% Similarity=0.307 Sum_probs=87.2
Q ss_pred cCCCCCCeEEEEECCC--------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 359 SDTDIAGMVVVKDIVS--------RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s--------~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
..++++|++.+|.++. -+++.+|++|..||-|++..+.|..+.+|+.||+ ||.|.+-++ .....+
T Consensus 310 it~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n------~dp~ds 382 (577)
T KOG0642|consen 310 ITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPN------QDPDDS 382 (577)
T ss_pred EEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCC------CCcccc
Confidence 3578999999999932 2689999999999999999999999999999998 899988322 211111
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+++. -+....-||+.+ |+.+++|.....|+++|.|||+++|....
T Consensus 383 ~dp~----vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 383 YDPS----VLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred cCcc----hhccceeccccc-eeeeeecccccceeeecCCceEEeeccCC
Confidence 2211 233334699875 99999999999999999999999998754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-06 Score=88.85 Aligned_cols=305 Identities=15% Similarity=0.177 Sum_probs=164.8
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC--------ceEEeeecCCceEEEEEeeCCCCCCCCCCc
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN--------VSELVSRRDDPVTFLQMQPLPAKSDGQEGF 132 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~--------~~ells~~dG~V~~v~~lp~p~~~~~~D~f 132 (627)
.+++|+-+-|-+.. ..++...|-|.-+++|-++.... ..-.|++|++.|.++++.|+-
T Consensus 12 ~~~pv~s~dfq~n~-----~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g--------- 77 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNS-----LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG--------- 77 (434)
T ss_pred CCCceEEEEeccCc-----ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc---------
Confidence 56778888886532 13788899999999999975321 134567899999999998764
Q ss_pred CCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECC--------C-----Cc---eEEEE
Q 046828 133 RNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLR--------S-----HN---YVHVL 196 (627)
Q Consensus 133 ~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~--------t-----~~---~V~tL 196 (627)
.|||.. .|+ +.|.+|-.. + .+ ..+.+
T Consensus 78 ----elLASg-~D~---------------------------------g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l 119 (434)
T KOG1009|consen 78 ----ELLASG-GDG---------------------------------GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL 119 (434)
T ss_pred ----Ceeeec-CCC---------------------------------ceEEEEEecCcCCccccchhhhCccceEEEEEe
Confidence 455532 121 234444332 3 11 12344
Q ss_pred e-cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCC
Q 046828 197 R-FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNN 270 (627)
Q Consensus 197 ~-f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~ 270 (627)
. ++..||++++++ ..|+++ .+..+++||+..+..+..+.+|..- +.-+|+.| .++|.-+.+
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y-------------vqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY-------------VQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc-------------cceeecchhhhhhhhhccC
Confidence 4 456999999987 566655 5778999999999988887776432 11244444 445443322
Q ss_pred CCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCC---cceeEEeeeeccccCCCCCCCccCCC
Q 046828 271 PLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGD---MGYKTLSRYYQDFIPDGSSSPVSSNS 347 (627)
Q Consensus 271 ~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~---~g~~~~s~y~~~~~p~g~~~~~s~~~ 347 (627)
.-. +. ++. .-..++.... ...+.+. .+.-...++|.+ .+-..+....
T Consensus 187 r~~----~~--~~~-----------~~~~~~~~~~---------~~~m~~~~~~~~e~~s~rLfhD----eTlksFFrRl 236 (434)
T KOG1009|consen 187 RHP----EG--FSA-----------KLKQVIKRHG---------LDIMPAKAFNEREGKSTRLFHD----ETLKSFFRRL 236 (434)
T ss_pred ccc----ce--eee-----------eeeeeeeeee---------eeEeeecccCCCCcceeeeeec----Cchhhhhhhc
Confidence 200 00 000 0000000000 0000000 000111222221 1111111111
Q ss_pred cccc-Cccc-ccccCCCC-----CCeEEEEECCC-CeEEEEeccCCCCeEEEEEC------------------CCCCEEE
Q 046828 348 SWKA-GRNA-SHSSDTDI-----AGMVVVKDIVS-RSVISQFRAHTSPISALCFD------------------RSGTLLV 401 (627)
Q Consensus 348 ~~~~-g~~~-~~~~~~~~-----dG~V~IwD~~s-~~~l~~~~aH~~~Is~laFs------------------pdG~lLa 401 (627)
.|.+ |.+. +-+..... -....+++-.. .++++++..-..+..+++|+ |-+..+|
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 1110 1110 00000011 22334554432 35677777766677777665 3466788
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 402 TASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 402 TaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.|..+. +.|||... - ..++.+ .+.+-+.|++|+||+||..|+++|.||-+-+--+++.
T Consensus 317 iAt~~s--vyvydtq~-------~------------~P~~~v-~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IATKNS--VYVYDTQT-------L------------EPLAVV-DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eeecce--EEEecccc-------c------------cceEEE-eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 888873 78999751 1 133333 3445567999999999999999999999888777654
Q ss_pred C
Q 046828 482 G 482 (627)
Q Consensus 482 g 482 (627)
+
T Consensus 375 e 375 (434)
T KOG1009|consen 375 E 375 (434)
T ss_pred h
Confidence 3
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.7e-06 Score=92.26 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=60.3
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++.. |. .|.++|+. .+ ...+
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-------g~-------------~~~~ 328 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-------GS-------------NPRR 328 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-------CC-------------CeEE
Confidence 4577888887754 4566666667778999999999988753 42 25555653 12 1222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCC-eEEEEEcCCCCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRG-TCHIFVLTPFGG 483 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dg-TvhIw~i~~~gg 483 (627)
+..+ ...+...+|||||++|+..+.++ ..+||-++..++
T Consensus 329 lt~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 329 ISFG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred eecC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 2222 12356789999999999887643 344444443343
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-05 Score=83.07 Aligned_cols=82 Identities=17% Similarity=0.372 Sum_probs=59.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee-cCCcCcEEEEEEccCCCEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR-GMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r-G~t~a~I~sIaFSpDg~~La 465 (627)
....|+++|||++|..+......|-+|++.+. +|. ...+..... |. .-..++|+|||+||+
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g~----------l~~~~~~~~~G~---~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TGT----------LTLVQTVPTGGK---FPRHFAFSPDGRYLY 307 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TTT----------EEEEEEEEESSS---SEEEEEE-TTSSEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CCc----------eEEEEEEeCCCC---CccEEEEeCCCCEEE
Confidence 57899999999999998877777999999532 232 112333322 32 268999999999999
Q ss_pred EEe-CCCeEEEEEcCCCCCeee
Q 046828 466 IVS-SRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 466 s~S-~dgTvhIw~i~~~gg~~~ 486 (627)
++. .+++|.+|+++...|.-.
T Consensus 308 Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEE
T ss_pred EEecCCCeEEEEEEeCCCCcEE
Confidence 988 567999999987766543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.8e-08 Score=106.89 Aligned_cols=100 Identities=12% Similarity=0.269 Sum_probs=79.9
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
--.|+||+..+-.++..+..|.-.|+.|+|||||++|+++|.|.+ +.+|..+... ... .-+..
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~----~~e------------~~fa~ 613 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQEDI----KDE------------FRFAC 613 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeeccc----chh------------hhhcc
Confidence 456899999998888899999999999999999999999999987 7999875211 010 11111
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..-|++ .|++.+|+||++++|++|.|.+|.||.+...
T Consensus 614 ~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 614 LKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccccce-EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 122322 3999999999999999999999999998754
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=100.28 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=93.2
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC-----------CCc
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG-----------SAS 428 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g-----------~~~ 428 (627)
.++.||++||||..+...+..+.+|...|.+|.|+|||++||+-+.+ . .+||++.......... .+.
T Consensus 161 tgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~-~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~ 238 (398)
T KOG0771|consen 161 TGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-S-ARVWSVNTGAALARKTPFSKDEMFSSCRFS 238 (398)
T ss_pred eccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-c-eEEEEeccCchhhhcCCcccchhhhhceec
Confidence 56799999999998888888999999999999999999999999999 3 7999986210000000 000
Q ss_pred cccC----------CCCceeEEE--EEeec---------CC-cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe-e
Q 046828 429 QTYD----------WTSSHVHLY--KLHRG---------MT-SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE-T 485 (627)
Q Consensus 429 ~~~~----------~~~~~~~l~--~l~rG---------~t-~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~-~ 485 (627)
...+ -+.....++ .+.+| .. .-.|.+++-|+||+++|.++.||.|-|++...-.-. .
T Consensus 239 ~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 239 VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe
Confidence 0000 000001111 11111 00 114899999999999999999999999998764322 2
Q ss_pred ecccccccccCCCCCCC
Q 046828 486 VLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 486 ~~~~h~s~v~~~~~~p~ 502 (627)
-.+.|...+.+..+.|.
T Consensus 319 vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 319 VKEAHLGFVTGLTFSPD 335 (398)
T ss_pred ehhhheeeeeeEEEcCC
Confidence 34566665665555554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=96.67 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=58.9
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
|.+||+.+++ +..+..|...+...+|+|||+.|+.++. +|. .+||++.... +. ..+ +
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~-----~~-----------~~~--l-- 331 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASG-----GG-----------ASL--V-- 331 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCC-----CC-----------eEE--e--
Confidence 5556776654 4456667777889999999998887664 566 7999875221 10 111 1
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+.. . ..++|||||++|+..+.++. .+|++..
T Consensus 332 ~~~-~--~~~~~SpDG~~ia~~~~~~i-~~~Dl~~ 362 (429)
T PRK01742 332 GGR-G--YSAQISADGKTLVMINGDNV-VKQDLTS 362 (429)
T ss_pred cCC-C--CCccCCCCCCEEEEEcCCCE-EEEECCC
Confidence 221 1 45789999999999887654 4588754
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.6e-06 Score=86.84 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=80.6
Q ss_pred CCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 362 DIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
..+++++.||+++.++...|. ||...|..|.|+|+-+ +|||+++||. |||||+. .. . ..
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R-~t-----k------------~p 250 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTR-KT-----K------------FP 250 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEecc-CC-----C------------cc
Confidence 468899999999987766665 9999999999999865 6899999998 7999986 21 1 14
Q ss_pred EEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~g 482 (627)
+.++ .+|+ ..|+++.|.| -.+.|.+++.|..|-+|....-.
T Consensus 251 v~el-~~Hs-HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 251 VQEL-PGHS-HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred cccc-CCCc-eEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 5555 5665 4699999999 45788899999999999876554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.2e-05 Score=82.51 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=37.0
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe--CC--eEEEEeCCCCce
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--AA--QIYCFDALTLES 230 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~i~D~~t~e~ 230 (627)
..|.+||+.+++......++..+...++++ +.|+... ++ .|++||+.+++.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 359999999998755445666666788887 6676543 22 699999998764
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-06 Score=83.62 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=41.5
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-----CCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-----GNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-----Gt~I~Vwdi~ 416 (627)
..|.|.+||..+.+.+..+... .++.++|||||++|+|+... ..-++||+..
T Consensus 123 ~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 4588999999999888877633 47899999999999999863 1237899873
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.3e-06 Score=90.32 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=59.6
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
.|.+||+.+++.. .+..+...+...+|+|||+.|+..+.++...+||.+... .+ ...++..
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-------------~~~~lt~ 328 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-------------APQRITW 328 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-------------CeEEeec
Confidence 4888999887643 444455567889999999999888876433577755322 12 1122211
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCC-Ce--EEEEEcC
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSR-GT--CHIFVLT 479 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~d-gT--vhIw~i~ 479 (627)
. ...+...+|||||++|+..+.+ +. +.+|++.
T Consensus 329 ~--~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 329 E--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred C--CCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 1 1225678999999999987654 33 4555554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.2e-06 Score=86.33 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=78.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEec---cCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFR---AHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~---aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
+.+.||.||++|++..+--..+. ....|+..|+++++ -.++||--.|...|.|-|+. .+.
T Consensus 214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR-~P~--------------- 277 (364)
T KOG0290|consen 214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR-VPC--------------- 277 (364)
T ss_pred EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec-CCC---------------
Confidence 45689999999999876433333 22467889999984 57889988887778999996 321
Q ss_pred ceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+.+| |||. +.|..|+|.| .+..|+++++|.-+-||++..-.
T Consensus 278 --tpva~L-~~H~-a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 278 --TPVARL-RNHQ-ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred --cceehh-hcCc-ccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 145556 5664 6799999999 55689999999999999998643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0002 Score=75.49 Aligned_cols=107 Identities=14% Similarity=0.214 Sum_probs=71.7
Q ss_pred CCCCeEEEEECCCC-eEEEEeccC---------CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 362 DIAGMVVVKDIVSR-SVISQFRAH---------TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 362 ~~dG~V~IwD~~s~-~~l~~~~aH---------~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
+-+++|.+|+.... ..+..++.+ .....+|..+|||++|..+..--..|-+|.+.+.. |
T Consensus 210 EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-----g------ 278 (346)
T COG2706 210 ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-----G------ 278 (346)
T ss_pred ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-----C------
Confidence 34567777776653 222222222 34588999999999998766555568899987542 2
Q ss_pred CCCCceeEEEEEeecCCcCc-EEEEEEccCCCEEEEEeCCC-eEEEEEcCCCCCeee
Q 046828 432 DWTSSHVHLYKLHRGMTSAV-IQDICFSHYSQWIAIVSSRG-TCHIFVLTPFGGETV 486 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~-I~sIaFSpDg~~Las~S~dg-TvhIw~i~~~gg~~~ 486 (627)
+|.-+.+-.+.+. -.+..|++++++|+++..++ +++||.+++..|.-.
T Consensus 279 -------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 279 -------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred -------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 2222222222232 57899999999999988765 799999998877643
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-05 Score=89.51 Aligned_cols=93 Identities=22% Similarity=0.274 Sum_probs=60.1
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
..|.+||+.+++. ..+..|.......+|+|||+.|+..+.. |. ..||.+... .+. .....+
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~-~~iy~~dl~-----~g~-----------~~~lt~ 333 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR-PQIYRVAAS-----GGS-----------AERLTF 333 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCC-ceEEEEECC-----CCC-----------eEEeec
Confidence 4688999988764 4566666556778999999999888754 44 455544211 121 111222
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLT 479 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~ 479 (627)
.|. ....++|||||++|+..+.++ .|.+|++.
T Consensus 334 -~g~---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 334 -QGN---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred -CCC---CccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 221 245689999999999876543 47777764
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-06 Score=88.74 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=85.1
Q ss_pred CCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 362 DIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 362 ~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
..-+.|++||+..+ +++..|.--..+|+++...|+|.++.+|...|. +-.||+. .+ .++
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r-------~~------------kl~ 282 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLR-------GG------------KLL 282 (412)
T ss_pred ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheeccc-------Cc------------eee
Confidence 34578999999876 589999988999999999999999999999998 7999986 22 244
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
-..+.|.+. .|.+|.-.|..++||+++.|.-++|||+....-
T Consensus 283 g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 283 GCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 443567664 499999999999999999999999999987543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.2e-06 Score=83.66 Aligned_cols=106 Identities=10% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
+.|+.+.-||+++++....+++|+.-|-++.--...-.+.|+++||+ +||||++. +...+-.. .+.+--
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt-vRvWd~kt-------~k~v~~ie---~yk~~~ 201 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT-VRVWDTKT-------QKHVSMIE---PYKNPN 201 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc-EEEEeccc-------cceeEEec---cccChh
Confidence 47999999999999999999999999999999444445679999999 79999972 21100000 000111
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+.|-+-...|-+++- |..||+++... ..-||.+....
T Consensus 202 -~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse 238 (325)
T KOG0649|consen 202 -LLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSE 238 (325)
T ss_pred -hcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCC
Confidence 112222223665554 55599887544 57889987654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.3e-05 Score=82.73 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=56.2
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN--NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt--~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
.|.++|+.+++. ..+..+...+..++|+|+|++|+.++.++. .|.+||+. ++ ....+
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~-------~~-------------~~~~l 361 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD-------GG-------------GERVL 361 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC-------CC-------------CeEEc
Confidence 566777776653 234444556778899999999999887752 25666764 12 11222
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
..+ ......+|+||+++|+..+.++....+.+
T Consensus 362 ~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~ 393 (417)
T TIGR02800 362 TDT---GLDESPSFAPNGRMILYATTRGGRGVLGL 393 (417)
T ss_pred cCC---CCCCCceECCCCCEEEEEEeCCCcEEEEE
Confidence 111 12356789999999999888765443333
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=90.84 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=77.3
Q ss_pred CCCCCeEEEEECCCCeEEEEec--cCC-CCeEEEEECCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFR--AHT-SPISALCFDRSGTLLVTASIHGN---NINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~--aH~-~~Is~laFspdG~lLaTaS~dGt---~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
+..||+|++||+++....+++. +|. .|..+++.+..+.+++++.+.-. .+.+||+....
T Consensus 90 ~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q--------------- 154 (376)
T KOG1188|consen 90 CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ--------------- 154 (376)
T ss_pred eccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc---------------
Confidence 4679999999999887666554 555 57788888889999999976432 36899996211
Q ss_pred CceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~g 482 (627)
+.+..+..-| ...|++|.|.| |-..|++||-||-|-||+++...
T Consensus 155 ---q~l~~~~eSH-~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 155 ---QLLRQLNESH-NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ---chhhhhhhhc-cCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 1233333333 34699999999 77899999999999999998653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-07 Score=102.14 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=74.1
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
++....--...|...+|+|||++||+.|.||. +||||.. . ++|.-+.+-. -+-..|++
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fd-t-------------------~eLlg~mkSY-FGGLLCvc 339 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFD-T-------------------QELLGVMKSY-FGGLLCVC 339 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCce-EEEeecc-H-------------------HHHHHHHHhh-ccceEEEE
Confidence 34444434568999999999999999999998 7999985 1 1222221111 12479999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
||||||||++|+.|.-|.||.+....-...-++|++=|....++|
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999987655445567776554444443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=85.29 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=85.9
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEE-EeccCcEEEEecCCCCCceEEe------eecCCceEEEEEeeCCCCCCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLL-LGYSNGFQVLDVEDATNVSELV------SRRDDPVTFLQMQPLPAKSDGQEG 131 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~-~Gy~~G~qVWdv~~~~~~~ell------s~~dG~V~~v~~lp~p~~~~~~D~ 131 (627)
..|+.+|+.+.|+-. + ..++. ++.|..+.||++...+-.+++. -.|.-.|..|++-|.-.
T Consensus 78 ~GHt~~vLDi~w~Pf--n----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~------- 144 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPF--N----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP------- 144 (472)
T ss_pred cCccccccccccCcc--C----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-------
Confidence 347788886555422 2 23444 4556689999998766433222 23444555566555421
Q ss_pred cCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--
Q 046828 132 FRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-- 209 (627)
Q Consensus 132 f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-- 209 (627)
+.|+. +..+++|.+|+..||+.+-+|+++.-|++|.||.
T Consensus 145 -----NVLls----------------------------------ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 145 -----NVLLS----------------------------------AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG 185 (472)
T ss_pred -----hhHhh----------------------------------ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCC
Confidence 22221 1235889999999999999999999999999997
Q ss_pred cEEEEEe-CCeEEEEeCCCCceeEEEEcC
Q 046828 210 RIVAVGL-AAQIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 210 ~~LaV~~-~~~I~i~D~~t~e~~~tl~~~ 237 (627)
..|+.+. +.+|+|||.++++.+..-..|
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeeecccc
Confidence 5666554 568999999999987665444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0008 Score=72.54 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=66.3
Q ss_pred CCCeEEEEECCC-----CeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCC---------CCEEEEEeCCCCCCC
Q 046828 363 IAGMVVVKDIVS-----RSVISQFRA-------HTSPISALCFDRSGTLLVTASIH---------GNNINIFRIMPSSSK 421 (627)
Q Consensus 363 ~dG~V~IwD~~s-----~~~l~~~~a-------H~~~Is~laFspdG~lLaTaS~d---------Gt~I~Vwdi~p~~~~ 421 (627)
..|.|.+.|+.. .+.+..+.. ....+.-++|+|+|+.|..+... |+.|-|+|..
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~----- 287 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK----- 287 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC-----
Confidence 349999999543 333433322 12334459999999999885422 2347888875
Q ss_pred CCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC-EEEEEe-CCCeEEEEEcCCCC
Q 046828 422 GRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ-WIAIVS-SRGTCHIFVLTPFG 482 (627)
Q Consensus 422 ~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~-~Las~S-~dgTvhIw~i~~~g 482 (627)
++ ..+.++.-|. .+..|+||||++ +|.+.+ .+++|+|+|+....
T Consensus 288 --t~------------kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 288 --TG------------KRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred --CC------------eEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 23 2555555453 589999999999 887777 58899999987643
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00011 Score=82.00 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=35.2
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe--CC--eEEEEeCCCCce
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--AA--QIYCFDALTLES 230 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~i~D~~t~e~ 230 (627)
..|.+||+.+++....-.++.......+++ +.|+... ++ +|+++|+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 459999999987644334555556788887 5665543 23 499999988764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.2e-07 Score=64.15 Aligned_cols=38 Identities=26% Similarity=0.633 Sum_probs=36.1
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
+++..|++|.++|.+|+|+|++.+|+|++.||+ |+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 578899999999999999999999999999997 89997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-05 Score=85.58 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=58.3
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
|.++|+.++. +..+..|...+...+|+|||+.|+..+.. |. ..||.+... .+. .....+ .
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~-----~g~-----------~~~lt~-~ 326 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPAS-----GGA-----------AQRVTF-T 326 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECC-----CCc-----------eEEEec-C
Confidence 4455555443 44555565556678899999999887765 44 678876311 111 112222 2
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcCC
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLTP 480 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~~ 480 (627)
|. .....+|||||++|+..+.++ .|.+|++..
T Consensus 327 g~---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 327 GS---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred CC---CcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 21 234678999999999888765 588888764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.6e-06 Score=92.55 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=109.3
Q ss_pred eEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCc
Q 046828 201 TVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGR 278 (627)
Q Consensus 201 ~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr 278 (627)
.|++|+|-| .-|+++.++++++||..+|..++++.+|... + ..+||+-+..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-------------V-------ycVAys~dGk------- 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-------------V-------YCVAYAKDGK------- 66 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce-------------E-------EEEEEccCCc-------
Confidence 788999987 5788888899999999999999999998653 2 2356765321
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccc
Q 046828 279 LSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHS 358 (627)
Q Consensus 279 ~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~ 358 (627)
+|
T Consensus 67 --------------------------------------------------------------------------rF---- 68 (1081)
T KOG1538|consen 67 --------------------------------------------------------------------------RF---- 68 (1081)
T ss_pred --------------------------------------------------------------------------ee----
Confidence 01
Q ss_pred cCCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
++++.|..|.||.-+-. ..++ .|...|.|+.|+|=...|||+|-.- +-+|.....
T Consensus 69 ASG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~qK------------------- 124 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQK------------------- 124 (1081)
T ss_pred ccCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhhh-------------------
Confidence 14567899999976533 2333 7999999999999999999999863 678975410
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.+.+. + ..++|.+++|..||++||.|=.+|||-|-+
T Consensus 125 -~V~K~-k--ss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 125 -SVSKH-K--SSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred -hHHhh-h--hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 11111 1 245799999999999999999999999874
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-05 Score=87.77 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=64.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
++++|-..+|||-. ++.+..-.+|..||++++|+|+ ++++.+|-+ + .| +. .
T Consensus 203 sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t-~R---~~-~--------------------- 253 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-T-AR---FS-S--------------------- 253 (737)
T ss_pred ecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-e-ee---ec-C---------------------
Confidence 46789999999976 5667777899999999999999 888888754 2 34 21 1
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEE-EEEcC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCH-IFVLT 479 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvh-Iw~i~ 479 (627)
. ....|..|+||+||..+++++..|-+. -+.++
T Consensus 254 ---p----~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 254 ---P----RVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE 287 (737)
T ss_pred ---C----CccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence 0 112489999999999999999999753 34444
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-05 Score=82.91 Aligned_cols=97 Identities=20% Similarity=0.311 Sum_probs=71.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+..|+|||..++..+-...--...++-|.|||||..|..|.-|+. ++||+.... |.. ..+.
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav-frlw~e~q~--------------wt~---erw~ 277 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV-FRLWQENQS--------------WTK---ERWI 277 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce-eeeehhccc--------------cee---ccee
Confidence 4678999999998766555444567999999999999999999986 899975311 111 1222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+-.| .|+.-+|+|+|++|..+....+ .||.+.-.+
T Consensus 278 lgsg----rvqtacWspcGsfLLf~~sgsp-~lysl~f~~ 312 (445)
T KOG2139|consen 278 LGSG----RVQTACWSPCGSFLLFACSGSP-RLYSLTFDG 312 (445)
T ss_pred ccCC----ceeeeeecCCCCEEEEEEcCCc-eEEEEeecC
Confidence 2223 6999999999999998876554 577776443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.1e-05 Score=87.73 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCeE-EEEe---ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 364 AGMVVVKDIVSRSV-ISQF---RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 364 dG~V~IwD~~s~~~-l~~~---~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+..+.+|+..++.. .... .-|+-++.+.+|+|.++++|+|..||+ |.||.-.-. .+ ... .
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~vw~d~~~-----~~--------~~~--t 243 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILVWRDFGS-----SD--------DSE--T 243 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEEEecccc-----cc--------ccc--c
Confidence 44577788776541 1111 246777999999999999999999999 899974310 00 000 1
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
...++. +.+.|.+++||+||.+|.+|+..|-.-+|.+...+
T Consensus 244 ~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 244 CTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 122223 23469999999999999999999999999998765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=7e-05 Score=83.49 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=61.2
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE-e
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL-H 444 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l-~ 444 (627)
.|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... +|. ..++ .
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-----~g~-------------~~~Lt~ 347 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-----SGK-------------VSRLTF 347 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CCC-------------EEEEec
Confidence 577788887653 4555565566778999999998877764322456644311 221 1222 1
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCCe
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGGE 484 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg~ 484 (627)
.+.. ....+|||||++|+..+. ++..+||.++..++.
T Consensus 348 ~g~~---~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 348 EGEQ---NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CCCC---CcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 2222 345799999999988766 456788777655544
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00011 Score=80.28 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=59.7
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-C-EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-N-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.+||+.+++. ..+..|.......+|+|||+.|+..+.++ . .|.++|+. .+ ...+
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-------~~-------------~~~~ 316 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-------GG-------------EVRR 316 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC-------CC-------------CEEE
Confidence 4578888887653 44555555556779999999988777654 3 24444543 12 1222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~~ 480 (627)
+..+ ...+..++|||||++|+.++.++ .|.+|++..
T Consensus 317 l~~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 317 LTFR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred eecC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 2211 12367889999999999998876 566666654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00016 Score=79.83 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=55.8
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.+||+.+++. ..+..+........|+|||+.|+..+.. |. .|.++++. .|. .....
T Consensus 267 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-------~g~-----------~~~lt 327 (430)
T PRK00178 267 PEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-------GGR-----------AERVT 327 (430)
T ss_pred ceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-------CCC-----------EEEee
Confidence 3578888887754 3455555556678999999988877754 33 24444543 221 11111
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCC-Ce--EEEEEcC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSR-GT--CHIFVLT 479 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~d-gT--vhIw~i~ 479 (627)
. .+. .....+|||||++|+..+.+ +. +.+|++.
T Consensus 328 ~-~~~---~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 328 F-VGN---YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred c-CCC---CccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 1 221 13457899999999988764 43 4455554
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.7e-05 Score=87.99 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=74.8
Q ss_pred CCCCCCeEEEEECCCC--eEEEEeccCC---CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 360 DTDIAGMVVVKDIVSR--SVISQFRAHT---SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~--~~l~~~~aH~---~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
+++.+|.|++||+... +...++..|- +.+++|..++...++|+|+. + .|+||++. |.-.
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~--------G~~l------ 1337 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS--------GEQL------ 1337 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC--------hhhh------
Confidence 4678999999999873 2233444553 35999999999999999998 4 48999985 2100
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.. .+-+..+-|.....+.+++|.|---.||+|+.|.+|-||.-+..
T Consensus 1338 ~~-~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1338 NI-IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cc-cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 00 01112222333344899999999999999999999999987653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.1e-05 Score=86.78 Aligned_cols=101 Identities=24% Similarity=0.269 Sum_probs=75.5
Q ss_pred CCCCCeEEEEECCCC---eEEEEeccCCCC--eEEEEECCCCCE-EEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 361 TDIAGMVVVKDIVSR---SVISQFRAHTSP--ISALCFDRSGTL-LVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~---~~l~~~~aH~~~--Is~laFspdG~l-LaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
|-.||.|++||.... ..+...+.|... |..+.|.+.|-- |++||.+|. |++||+.-... -.
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~----e~-------- 1293 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSK----ET-------- 1293 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcc----cc--------
Confidence 346999999998764 358888999887 999999998876 999999998 89999962110 00
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
...-.+.-..|- ..+++...++...+|+|+. +.|.||++.
T Consensus 1294 -~~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1294 -FLTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred -cceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 000111111132 3688889999999999999 999999985
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.6e-06 Score=81.96 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=51.9
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
+++-||.||||.-+++++++.++-|...|.+|+|+||-.++|.||.|++ |-+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 4678999999999999999999999999999999999999999999998 899985
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.001 Score=73.79 Aligned_cols=83 Identities=11% Similarity=0.225 Sum_probs=51.7
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCC-C-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 379 SQFRAHTSPISALCFDRSGTLLVTASIH-G-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 379 ~~~~aH~~~Is~laFspdG~lLaTaS~d-G-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
..+..+...+...+|+|||+.|+..+.+ | ..|.+||+. +| ...++..+ ...+.+..
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~-------~g-------------~~~~Lt~~--~~~~~~p~ 377 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA-------TG-------------RDYQLTTS--PENKESPS 377 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC-------CC-------------CeEEccCC--CCCccceE
Confidence 3344444567788999999999877654 2 347888875 23 12233222 12367899
Q ss_pred EccCCCEEEEEeC-CCeEEEEEcCCCCC
Q 046828 457 FSHYSQWIAIVSS-RGTCHIFVLTPFGG 483 (627)
Q Consensus 457 FSpDg~~Las~S~-dgTvhIw~i~~~gg 483 (627)
|+|||++|+..+. ++.-.||.++..++
T Consensus 378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 378 WAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999999986544 44445555544444
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.6e-05 Score=86.29 Aligned_cols=56 Identities=14% Similarity=0.324 Sum_probs=47.2
Q ss_pred CCCCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.++.+|.+.|||+... +++...+.+......+.|+++|++|+.|+..|+ +++|++.
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~-~~~~~l~ 516 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT-THILKLS 516 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc-EEEEEcC
Confidence 3467999999999654 567777767777888999999999999999999 7999985
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-06 Score=98.09 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=47.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+++.|..|++|-+..+.++..+++|++.|++|+|+|-- +.+.||+ +++||..
T Consensus 249 aaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt-~~~wd~r 300 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGT-CRIWDAR 300 (1113)
T ss_pred hcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCc-eEecccc
Confidence 45689999999999999999999999999999999965 7788998 7999975
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0043 Score=66.71 Aligned_cols=104 Identities=21% Similarity=0.351 Sum_probs=64.9
Q ss_pred CeEEEEECCCCe--E--EEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 365 GMVVVKDIVSRS--V--ISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 365 G~V~IwD~~s~~--~--l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
..|.+|++.... . ...+. .....-..|+|+|||+++....+....|.+|++.+. .|. ...
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-----~g~----------~~~ 230 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-----DGS----------LTE 230 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-----TTE----------EEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-----CCc----------eeE
Confidence 357777775543 1 23333 223456889999999999999888777999998522 221 011
Q ss_pred EEEEe---ecCCcC-cEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCC
Q 046828 440 LYKLH---RGMTSA-VIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGG 483 (627)
Q Consensus 440 l~~l~---rG~t~a-~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg 483 (627)
+.... .+.+.. .-..|++||||++|.++.. .++|.+|++++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG 279 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence 22111 122221 3789999999999988774 66899999976544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.8e-06 Score=90.28 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=71.9
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
+-+.+.+|++=|+||.|+.+|.+||+||+|-+ +.|||.. + +..++....||+ +.|.++.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r-~ivWd~~-~------------------~KllhsI~TgHt-aNIFsvK 100 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTR-LIVWDPF-E------------------YKLLHSISTGHT-ANIFSVK 100 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcce-EEeecch-h------------------cceeeeeecccc-cceeEEe
Confidence 34678999999999999999999999999976 7999964 1 136777788987 5799999
Q ss_pred Ecc--CCCEEEEEeCCCeEEEEEcCCC
Q 046828 457 FSH--YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 457 FSp--Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
|-| ..+.|+++..|..||||+++..
T Consensus 101 FvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 101 FVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred eeccCCCeEEEeccCcceEEEEecccc
Confidence 999 6689999999999999999863
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00031 Score=77.61 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=72.2
Q ss_pred CCCCCeEEEEECCCCeEEEEecc------CCC-----CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRA------HTS-----PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~a------H~~-----~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
+..+|.|..||......+..+.+ |.. .|++|+|+.||-.++.|...|. +.|||+.. ..
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa-------~~--- 261 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRA-------SK--- 261 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEccc-------CC---
Confidence 34688899999887765555543 322 3999999999999999999998 69999962 11
Q ss_pred ccCCCCceeEEEEEeecCCcCcEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 430 TYDWTSSHVHLYKLHRGMTSAVIQDICFSHY-SQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD-g~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
.+..-..+. .-.|..|.|-+. .+--+++.+...++||+-........++
T Consensus 262 ---------pl~~kdh~~-e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 262 ---------PLLVKDHGY-ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred ---------ceeecccCC-ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 122111121 235999999664 4444555677789999976544444333
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-05 Score=78.48 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=45.0
Q ss_pred CCCCCCeEEEEECCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 360 DTDIAGMVVVKDIVS-RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s-~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
+++.+|.|++||++. +..+..+..|...++.++|+|-=.+|||+| |+ |+|..
T Consensus 314 sG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss--Gq--r~f~~ 366 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS--GQ--RIFKY 366 (406)
T ss_pred ccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc--Cc--eeecC
Confidence 356789999999998 677899999999999999999999999998 54 67765
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00099 Score=72.55 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=108.6
Q ss_pred cEEEEEECCCCceEEEEecCCeE-EEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTV-YMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V-~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
+.|.|.|..+.+.++++.....+ ..+.+++ +++.|+ .++.|.++|+.+++.+.++..-..|
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~--------------- 80 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP--------------- 80 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE---------------
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc---------------
Confidence 67999999999999999865544 4466776 666555 4679999999999988888642221
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
+-+|++.+... -.+..
T Consensus 81 ------~~i~~s~DG~~----------------------------------------------------~~v~n------ 96 (369)
T PF02239_consen 81 ------RGIAVSPDGKY----------------------------------------------------VYVAN------ 96 (369)
T ss_dssp ------EEEEE--TTTE----------------------------------------------------EEEEE------
T ss_pred ------ceEEEcCCCCE----------------------------------------------------EEEEe------
Confidence 23343332110 00111
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC-------CCCeEEEEECCCCCEEEEEeCCCC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH-------TSPISALCFDRSGTLLVTASIHGN 408 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH-------~~~Is~laFspdG~lLaTaS~dGt 408 (627)
..++.|.|+|.++.+++.++... .+.+.+|-.+|....++.+-.+.-
T Consensus 97 --------------------------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 97 --------------------------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG 150 (369)
T ss_dssp --------------------------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred --------------------------cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC
Confidence 14678999999999999988754 346889999999997777766643
Q ss_pred EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE-eCCCeEEEEEcCCCC
Q 046828 409 NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV-SSRGTCHIFVLTPFG 482 (627)
Q Consensus 409 ~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~-S~dgTvhIw~i~~~g 482 (627)
.|-+-|.... . ......+..|. ...+..|+||+++++++ ..+..+-+++.....
T Consensus 151 ~I~vVdy~d~-------~----------~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 151 EIWVVDYSDP-------K----------NLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEEEETTTS-------S----------CEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred eEEEEEeccc-------c----------ccceeeecccc---cccccccCcccceeeecccccceeEEEeeccce
Confidence 3444454311 0 01223333332 26899999999987664 557788888877643
|
... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-05 Score=83.30 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=76.7
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..+|.|.|.|..+.+.+..|.....+-..++|+|||++|..++.||. |.++|+. ++ ..+.
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~-vsviD~~-------~~------------~~v~ 72 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT-VSVIDLA-------TG------------KVVA 72 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE-EEEEETT-------SS------------SEEE
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe-EEEEECC-------cc------------cEEE
Confidence 36789999999999999999976555556889999999999999997 7999986 23 2566
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCCeeeccc
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGGETVLQI 489 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg~~~~~~ 489 (627)
+++-|.. -.++++|+||++|+++. ..+++.|+|.........+..
T Consensus 73 ~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 73 TIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred EEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 6766653 58899999999999876 689999999887655544433
|
... |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.002 Score=64.83 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=52.8
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEe---cCcEEEEEeCCeEEEEeCCCCceeEEEEcCCCC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRC---SPRIVAVGLAAQIYCFDALTLESKFSVLTYPVP 240 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~---s~~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~ 240 (627)
++.+.-||+++|+.-++++.++ -|.+|.. ++++|.-+-++.++|||..|.++...|.-+.+|
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 4779999999999999999665 7888776 347888888899999999999999999877655
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.7e-05 Score=77.96 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=61.8
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEc
Q 046828 379 SQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFS 458 (627)
Q Consensus 379 ~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFS 458 (627)
..-++| .+|++|++++||+.|+|||.+-..|+|||.. +|.. ..+. .+|. ..+.-+.||
T Consensus 190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-------tg~~----------~pL~--~~gl--gg~slLkwS 247 (445)
T KOG2139|consen 190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-------TGQK----------IPLI--PKGL--GGFSLLKWS 247 (445)
T ss_pred eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-------CCCc----------cccc--ccCC--CceeeEEEc
Confidence 344456 7899999999999999999988889999975 2321 1232 2332 348889999
Q ss_pred cCCCEEEEEeCCCeEEEEEcC
Q 046828 459 HYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 459 pDg~~Las~S~dgTvhIw~i~ 479 (627)
||+.+|.+++-|++.+||+.+
T Consensus 248 Pdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCCCEEEEecccceeeeehhc
Confidence 999999999999999999544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.8e-05 Score=86.86 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=78.8
Q ss_pred CCCCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 362 DIAGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+.|-.+++|++.+.+.+. +--+|+..|..++|.|+ +|+|+++|=| .|+|+.. +. .
T Consensus 194 SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~~--------~~-------------~ 249 (967)
T KOG0974|consen 194 SDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGVN--------GT-------------Q 249 (967)
T ss_pred ecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEecc--------cc-------------e
Confidence 467789999999988765 66689999999999999 9999999987 7999763 21 1
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.+..++|-...|+.++..++.-++.++..||++++|++...+.
T Consensus 250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 1122344333499999999999999999999999999976543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=79.83 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=124.9
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
..++++|...-+.-++++. +.+..-+....+.+.++.+.+.. -|||+ + +
T Consensus 146 cDly~~gsg~evYRlNLEq-GrfL~P~~~~~~~lN~v~in~~h-------------gLla~-G-------t--------- 194 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQ-GRFLNPFETDSGELNVVSINEEH-------------GLLAC-G-------T--------- 194 (703)
T ss_pred ccEEEeecCcceEEEEccc-cccccccccccccceeeeecCcc-------------ceEEe-c-------c---------
Confidence 6688888888888888886 44555555555778888887654 45542 1 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCe------------EEEEEecC--cEEEEEe-CCeEEEEeC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRST------------VYMVRCSP--RIVAVGL-AAQIYCFDA 225 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~------------V~sV~~s~--~~LaV~~-~~~I~i~D~ 225 (627)
.+++|.+||.++.+.+.+|...+. |.++.|+. -.++||. .+.|+|||+
T Consensus 195 -----------------~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 195 -----------------EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred -----------------cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 137899999999999999987666 89999976 5678886 568999999
Q ss_pred CCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhh
Q 046828 226 LTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYA 305 (627)
Q Consensus 226 ~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a 305 (627)
++-+.+.. ..|... .++. .|.+-..+.
T Consensus 258 Ra~~pl~~-kdh~~e-------------~pi~-----~l~~~~~~~---------------------------------- 284 (703)
T KOG2321|consen 258 RASKPLLV-KDHGYE-------------LPIK-----KLDWQDTDQ---------------------------------- 284 (703)
T ss_pred ccCCceee-cccCCc-------------ccee-----eecccccCC----------------------------------
Confidence 99876543 333221 1111 122211000
Q ss_pred hhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCC
Q 046828 306 VESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHT 385 (627)
Q Consensus 306 ~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~ 385 (627)
. .++ ......+++|||-.+++..+.+.. +
T Consensus 285 -----------------q-~~v--------------------------------~S~Dk~~~kiWd~~~Gk~~asiEp-t 313 (703)
T KOG2321|consen 285 -----------------Q-NKV--------------------------------VSMDKRILKIWDECTGKPMASIEP-T 313 (703)
T ss_pred -----------------C-ceE--------------------------------EecchHHhhhcccccCCceeeccc-c
Confidence 0 000 012345789999999999888886 4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
..|..+||-|++-++.+|-+.+. |..|=|
T Consensus 314 ~~lND~C~~p~sGm~f~Ane~~~-m~~yyi 342 (703)
T KOG2321|consen 314 SDLNDFCFVPGSGMFFTANESSK-MHTYYI 342 (703)
T ss_pred CCcCceeeecCCceEEEecCCCc-ceeEEc
Confidence 56999999999999999999887 555544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.011 Score=65.38 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=37.2
Q ss_pred EEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeC----CeEEEEeCCCCce
Q 046828 181 AVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLA----AQIYCFDALTLES 230 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~----~~I~i~D~~t~e~ 230 (627)
.|-++|+.+++...-..++..+...++++ +.|+.... .+|+++|+.+++.
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 48999999998766556777677778887 56665543 3699999988763
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0013 Score=78.20 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=61.7
Q ss_pred CCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCC---CEEEEEeC--CCCEEEEEeCCCCCCCCCCCCCcccc-CCCCc
Q 046828 364 AGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSG---TLLVTASI--HGNNINIFRIMPSSSKGRSGSASQTY-DWTSS 436 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG---~lLaTaS~--dGt~I~Vwdi~p~~~~~~~g~~~~~~-~~~~~ 436 (627)
.|.+.+||++=+.++.... +|..+|..|+.+|-- ...++++. .+. +-+|++. .+.+ ......+ +.+.
T Consensus 1216 ~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn~~-~g~~---~~vl~~s~~~p~- 1289 (1431)
T KOG1240|consen 1216 RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWNME-TGLR---QTVLWASDGAPI- 1289 (1431)
T ss_pred CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeeecc-cCcc---eEEEEcCCCCcc-
Confidence 4678999999887777655 556788888877643 45555554 333 7899986 2111 0000000 0000
Q ss_pred eeEEEEEe--ecCCcCc--EEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 437 HVHLYKLH--RGMTSAV--IQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 437 ~~~l~~l~--rG~t~a~--I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.-+.+- +...+.. ....++..-+.++.+++.|..|+.||....
T Consensus 1290 --ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1290 --LSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred --hhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 000000 0000111 233455556678999999999999998654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.8e-05 Score=81.22 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=51.9
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+.++++|+++|..+++.++...+|...++++++.|+|-+|++++.||. +++|.+.
T Consensus 507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld 561 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD 561 (577)
T ss_pred cccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhcc
Confidence 458999999999999999999999999999999999999999999998 7999885
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0012 Score=73.22 Aligned_cols=75 Identities=20% Similarity=0.151 Sum_probs=45.8
Q ss_pred CeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 387 PISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
.....+|+|||+.|+..+. +|. .+||.+.... .+. ....+..+ . ..+...+|||||++|+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~----~g~------------~~~~lt~~-~-~~~~~p~wSPDG~~La 342 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDP----EGQ------------SPRLLTKK-Y-RNSSCPAWSPDGKKIA 342 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCC-ceEEEEECcc----ccc------------ceEEeccC-C-CCccceeECCCCCEEE
Confidence 3456799999998887774 565 4677542110 010 12222111 1 2367889999999999
Q ss_pred EEeCCC---eEEEEEcCC
Q 046828 466 IVSSRG---TCHIFVLTP 480 (627)
Q Consensus 466 s~S~dg---TvhIw~i~~ 480 (627)
..+.++ .|++|++..
T Consensus 343 f~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 343 FCSVIKGVRQICVYDLAT 360 (428)
T ss_pred EEEcCCCCcEEEEEECCC
Confidence 876642 467777653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.2e-05 Score=85.75 Aligned_cols=102 Identities=12% Similarity=0.216 Sum_probs=80.3
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..++||.+||+|..+.+.+..++..=..+.|++|||||++|+|+.+|- ++.||... . .
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~-e-------------------r 364 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFE-E-------------------R 364 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEec-c-------------------c
Confidence 4568999999999999998888888888899999999999999999995 68999985 2 1
Q ss_pred EEEEEeecCCcCcEEEEEEcc------------------------------------------------CCCEEEEEeCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSH------------------------------------------------YSQWIAIVSSR 470 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSp------------------------------------------------Dg~~Las~S~d 470 (627)
++...-.||.. +|..++|.| .--.+.+++.|
T Consensus 365 RVVARGqGHkS-WVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqD 443 (636)
T KOG2394|consen 365 RVVARGQGHKS-WVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQD 443 (636)
T ss_pred eEEEecccccc-ceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeeccccc
Confidence 44443346543 588888872 11356778888
Q ss_pred CeEEEEEcCCCC
Q 046828 471 GTCHIFVLTPFG 482 (627)
Q Consensus 471 gTvhIw~i~~~g 482 (627)
-.+-|||+....
T Consensus 444 TqlcLWDlteD~ 455 (636)
T KOG2394|consen 444 TQLCLWDLTEDV 455 (636)
T ss_pred ceEEEEecchhh
Confidence 889999997654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0011 Score=73.13 Aligned_cols=132 Identities=19% Similarity=0.239 Sum_probs=91.7
Q ss_pred CCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe---CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcC
Q 046828 175 VAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL---AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSG 249 (627)
Q Consensus 175 ~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~---~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~ 249 (627)
+.|...++.+++....+.+-.|.-.++|++|.+|+ +-.+|+- -.+|.|||+.. ..++.+-.-|
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egp----------- 313 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGP----------- 313 (566)
T ss_pred cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCC-----------
Confidence 45667899999999777888888889999999997 4455543 45799999863 3444442211
Q ss_pred cccccceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEE
Q 046828 250 VNIGYGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTL 327 (627)
Q Consensus 250 ~~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~ 327 (627)
.+.+-++ ++.|..++
T Consensus 314 ----RN~~~fnp~g~ii~lAG----------------------------------------------------------- 330 (566)
T KOG2315|consen 314 ----RNTAFFNPHGNIILLAG----------------------------------------------------------- 330 (566)
T ss_pred ----ccceEECCCCCEEEEee-----------------------------------------------------------
Confidence 1112121 23444332
Q ss_pred eeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-
Q 046828 328 SRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH- 406 (627)
Q Consensus 328 s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d- 406 (627)
-+.-.|.|-|||..+.+.+..+.+-.. +...|+|||.++.||..-
T Consensus 331 --------------------------------FGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 331 --------------------------------FGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred --------------------------------cCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccc
Confidence 123568899999999999999997654 557899999999999763
Q ss_pred -----CCEEEEEeCC
Q 046828 407 -----GNNINIFRIM 416 (627)
Q Consensus 407 -----Gt~I~Vwdi~ 416 (627)
.- |+||+..
T Consensus 377 RlrvdNg-~Kiwhyt 390 (566)
T KOG2315|consen 377 RLRVDNG-IKIWHYT 390 (566)
T ss_pred cEEecCC-eEEEEec
Confidence 22 7999973
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00059 Score=76.38 Aligned_cols=257 Identities=16% Similarity=0.171 Sum_probs=148.5
Q ss_pred EEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCccc
Q 046828 83 VLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGL 162 (627)
Q Consensus 83 vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~ 162 (627)
=|+++-++.+-|||+++++ ....+..|...|.+|++..+. .+.|. |
T Consensus 26 qL~lAAg~rlliyD~ndG~-llqtLKgHKDtVycVAys~dG-------------krFAS---------G----------- 71 (1081)
T KOG1538|consen 26 QLILAAGSRLLVYDTSDGT-LLQPLKGHKDTVYCVAYAKDG-------------KRFAS---------G----------- 71 (1081)
T ss_pred eEEEecCCEEEEEeCCCcc-cccccccccceEEEEEEccCC-------------ceecc---------C-----------
Confidence 3555667889999999966 456677788899999886432 23221 1
Q ss_pred ccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEcCCCC
Q 046828 163 VRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLTYPVP 240 (627)
Q Consensus 163 ~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~ 240 (627)
.++..|.+|+.+ .+-+-.+.+...|.++.||| ..|+++.-...-+|.+..-... -|-..
T Consensus 72 --------------~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss 132 (1081)
T KOG1538|consen 72 --------------SADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSS 132 (1081)
T ss_pred --------------CCceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhh
Confidence 135889999854 33344455777999999999 7888887777778876542110 00000
Q ss_pred CCCCCCCcCcccccceeeE--cCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 241 HFGGQGTSGVNIGYGPMAV--GPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 241 ~~~~~g~~~~~~~~~~iAl--~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
......+. .+.+||.+-.+.++++...
T Consensus 133 -----------~R~~~CsWtnDGqylalG~~nGTIsiRNk---------------------------------------- 161 (1081)
T KOG1538|consen 133 -----------SRIICCSWTNDGQYLALGMFNGTISIRNK---------------------------------------- 161 (1081)
T ss_pred -----------eeEEEeeecCCCcEEEEeccCceEEeecC----------------------------------------
Confidence 00111222 3467777655444332110
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC--------CCeEEEEeccCCCCeEE
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV--------SRSVISQFRAHTSPISA 390 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~--------s~~~l~~~~aH~~~Is~ 390 (627)
.||...+ + ..|.|+.++.-. ..|.+.. ..+.+.++-|.|-. +++.+..-++-.-.-.|
T Consensus 162 ~gEek~~-I------~Rpgg~Nspiws-i~~~p~s------g~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~C 227 (1081)
T KOG1538|consen 162 NGEEKVK-I------ERPGGSNSPIWS-ICWNPSS------GEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCC 227 (1081)
T ss_pred CCCcceE-E------eCCCCCCCCceE-EEecCCC------CCCccceEEEEeccceeEEEEecceeecccccCCCCchh
Confidence 0111000 0 012222221100 0011100 01123334444432 23333322223334468
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|.+-++|.++..|+.|+. +++|--+ | .++-.+-. -...|+.++..|+++++++|.-|
T Consensus 228 isYf~NGEy~LiGGsdk~-L~~fTR~--------G------------vrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 228 ISYFTNGEYILLGGSDKQ-LSLFTRD--------G------------VRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred heeccCCcEEEEccCCCc-eEEEeec--------C------------eEEeeccc--cceeEEEEEEccCCceEEEEEcc
Confidence 899999999999999987 6888532 3 35555532 33469999999999999999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
||+--|++-.
T Consensus 285 GTiACyNl~f 294 (1081)
T KOG1538|consen 285 GTIACYNLIF 294 (1081)
T ss_pred CeeehhhhHH
Confidence 9999998854
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00026 Score=74.04 Aligned_cols=220 Identities=15% Similarity=0.241 Sum_probs=135.1
Q ss_pred CCcEEEEEE-CCCCceEEEEe--cCCeEEEEEecC--cEEEEEeCC-eEEEEeCC-CCceeEEEEcCCCCCCCCCCCcCc
Q 046828 178 SPTAVRFYS-LRSHNYVHVLR--FRSTVYMVRCSP--RIVAVGLAA-QIYCFDAL-TLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 178 ~~~tV~lwd-l~t~~~V~tL~--f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~-t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
.+.+||||= ...+++-..+. .++++.++.... ++|.++++. .+.-|.+. +++..-.++.+..-+ +.
T Consensus 44 ~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~-------~~ 116 (404)
T KOG1409|consen 44 EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ-------AR 116 (404)
T ss_pred ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh-------cc
Confidence 468999994 55788887776 467888888876 889999864 67777543 333333333332110 00
Q ss_pred ccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 251 NIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 251 ~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+.--.+++.+.|+-..+.++-+.- + ...+|..+.+|.+++--.-.+ -+..|
T Consensus 117 -v~~~if~~~~e~V~s~~~dk~~~~--------h---------c~e~~~~lg~Y~~~~~~t~~~-----~d~~~------ 167 (404)
T KOG1409|consen 117 -VSAIVFSLTHEWVLSTGKDKQFAW--------H---------CTESGNRLGGYNFETPASALQ-----FDALY------ 167 (404)
T ss_pred -eeeEEecCCceeEEEeccccceEE--------E---------eeccCCcccceEeeccCCCCc-----eeeEE------
Confidence 012235667788888775543210 0 001122222222221100000 00000
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE--EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV--KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN 408 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I--wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt 408 (627)
.-.+...|.|.+ .+......+.++.+|..+|.+++|+|...+|.+++.|-.
T Consensus 168 ---------------------------~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 168 ---------------------------AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred ---------------------------EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 012334455544 334455789999999999999999999999999999965
Q ss_pred EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 409 NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 409 ~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+.+|||- -. .| ..++++ |+. ..|+.+..-+--+.|.+.+.||.|-+|+++-.
T Consensus 221 -vi~wdig-g~----~g-------------~~~el~-gh~-~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 221 -VIMWDIG-GR----KG-------------TAYELQ-GHN-DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -eEEEecc-CC----cc-------------eeeeec-cch-hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 7899994 21 23 456664 443 35888888888889999999999999999753
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.1e-05 Score=83.13 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=116.4
Q ss_pred EEEecC-CeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEc-CCCCCCCCCCCcCcccccceeeEcCceEEEcC
Q 046828 194 HVLRFR-STVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLT-YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYAS 268 (627)
Q Consensus 194 ~tL~f~-s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~-~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~ 268 (627)
++|..+ +-|.+++++. .+|++|.++ +|.|||.-.-+.++.|.+ |. -++|++ ++|-|..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---------------aNIFsv--KFvP~tn 106 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---------------ANIFSV--KFVPYTN 106 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc---------------cceeEE--eeeccCC
Confidence 456644 5899999986 899999887 699999998888888875 32 134444 4554443
Q ss_pred CCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCc
Q 046828 269 NNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSS 348 (627)
Q Consensus 269 ~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~ 348 (627)
+..+
T Consensus 107 nriv---------------------------------------------------------------------------- 110 (758)
T KOG1310|consen 107 NRIV---------------------------------------------------------------------------- 110 (758)
T ss_pred CeEE----------------------------------------------------------------------------
Confidence 2100
Q ss_pred cccCcccccccCCCCCCeEEEEECCC----------CeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCC
Q 046828 349 WKAGRNASHSSDTDIAGMVVVKDIVS----------RSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMP 417 (627)
Q Consensus 349 ~~~g~~~~~~~~~~~dG~V~IwD~~s----------~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p 417 (627)
.++..|..|+++|+.. .+....+..|+..|-.|+--|+| ..+-+||+||+ ||-+|+.
T Consensus 111 ----------~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiR- 178 (758)
T KOG1310|consen 111 ----------LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIR- 178 (758)
T ss_pred ----------EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeeccc-
Confidence 0234677888888874 24566778899999999999999 88999999999 8999996
Q ss_pred CCCC-CCCCCCccccCCCCceeEEEEEeecC-CcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcC
Q 046828 418 SSSK-GRSGSASQTYDWTSSHVHLYKLHRGM-TSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 418 ~~~~-~~~g~~~~~~~~~~~~~~l~~l~rG~-t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~ 479 (627)
+++. ...+. ...++..-. .--...++..|| +-.+||+|+.|--.++||+.
T Consensus 179 Eph~c~p~~~------------~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 179 EPHVCNPDED------------CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CCccCCcccc------------ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 4321 00110 011110000 001268899999 66799999999999999953
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0017 Score=68.99 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=48.3
Q ss_pred CCCCeEEEEECCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 362 DIAGMVVVKDIVSRSVISQ-FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~-~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..-|.+..+|+..++.+.. |++-++.|+.|--+|++.+||+++-|.. +||||+.
T Consensus 266 n~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~k 320 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIK 320 (412)
T ss_pred cccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecc
Confidence 4567888999999988776 8888999999999999999999999975 8999997
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0021 Score=71.40 Aligned_cols=97 Identities=16% Similarity=0.310 Sum_probs=78.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+.+.|++|..|+...++.++.+++-+..+..++.+|||.+|++||.. |++||++ ++ .
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~---ik~~~~~-------~k-------------e 175 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQ---IKVLDIE-------TK-------------E 175 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccce---EEEEEcc-------Cc-------------e
Confidence 35678999999999999999999999999999999999999999954 8999997 22 5
Q ss_pred EEEEeecCCcCcEEEEEEccC-----CCEEEEEeC-CCeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHY-----SQWIAIVSS-RGTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpD-----g~~Las~S~-dgTvhIw~i~~ 480 (627)
+++-+.||- ..|.+++|--+ |+++.++-. ..-+-+|.+..
T Consensus 176 vv~~ftgh~-s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 176 VVITFTGHG-SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEecCCC-cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 666668875 46999999988 777766544 33356677654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=85.34 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=76.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+..-|.|.+|+..-.+.-..+.+|...|-++.|+-||++++|.|+|.+ +|+|+++....
T Consensus 150 ~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~------------------- 209 (967)
T KOG0974|consen 150 SGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREV------------------- 209 (967)
T ss_pred eccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccc-------------------
Confidence 3456688999998744333368999999999999999999999999987 89999972211
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+.-.--|| .|+|+.++|.|. .|++++.|-|+++|..+
T Consensus 210 ~~~~~fgH-saRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 210 LGCTGFGH-SARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred cCcccccc-cceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 10011355 478999999999 99999999999999543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00039 Score=80.33 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=135.9
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccce
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~ 256 (627)
+..+..+|+++.++.+.....+ .|.=|+-|.|.+..| ..++|.+-|..+++.++++..|... +..
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSD 222 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISD 222 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eee
Confidence 4678889999999999888765 688888888888887 5679999999999999999998753 445
Q ss_pred eeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccC
Q 046828 257 MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIP 336 (627)
Q Consensus 257 iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p 336 (627)
|.+.+..|+.++... |.
T Consensus 223 fDv~GNlLitCG~S~------R~--------------------------------------------------------- 239 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSM------RR--------------------------------------------------------- 239 (1118)
T ss_pred eeccCCeEEEeeccc------cc---------------------------------------------------------
Confidence 778778888776321 10
Q ss_pred CCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeC
Q 046828 337 DGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 337 ~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi 415 (627)
+ .-..|--|+|||++..+.+.-+.-|..| ..+.|.|. -+.+|.+|..|. +.+-|.
T Consensus 240 ---------------~-------~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~ 295 (1118)
T KOG1275|consen 240 ---------------Y-------NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDT 295 (1118)
T ss_pred ---------------c-------cccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeeccc
Confidence 0 0124667999999999888877777776 77889997 467888999998 577673
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
. .- + ++.. ..+.+. ....-|..+++|+.++.+|.+..+|-||+|.=.+
T Consensus 296 ~-~l-----s------NP~~---~~~~v~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 296 A-TL-----S------NPPA---GVKMVN--PNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred c-cc-----C------CCcc---ceeEEc--cCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 2 00 0 0111 112111 1112389999999999999999999999999433
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=51.79 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=31.0
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
+..+ +||.. .|.+|+|+|++++|++++.|++|+||+
T Consensus 4 ~~~~-~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTF-RGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEE-ESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEE-cCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 3444 67754 599999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00026 Score=75.37 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=73.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
....+.+|....+. ...+.+|-+-+..|+|+||+++|.||+.|++ |||-.. |.+. -+..
T Consensus 130 D~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-pa~f------------------~Ies 188 (390)
T KOG3914|consen 130 DVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-PATF------------------VIES 188 (390)
T ss_pred CceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-Cccc------------------chhh
Confidence 44455666655432 3456789999999999999999999999997 788765 3321 2333
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
+--||+. =|..|+.-++ +.|+++|.|+|+++|++.....+
T Consensus 189 fclGH~e-FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 189 FCLGHKE-FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hccccHh-heeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 4457764 3888887665 56999999999999999876554
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0046 Score=65.75 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=130.2
Q ss_pred cEEEEEECCCCceEEEEecCC---eEEEEEecC--cEEEEEe-CCeEEEEeCCCCce---eEEEEcCCCCCCCCCCCcCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS---TVYMVRCSP--RIVAVGL-AAQIYCFDALTLES---KFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~---~~tl~~~p~~~~~~~g~~~~ 250 (627)
.+|.+-|+++.+-+-...... .||.+..+| .+++|.. ++.|-+||.+..+. ++.+..++..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~---------- 196 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN---------- 196 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcc----------
Confidence 679999999999888877554 899999998 6777665 55799999987653 2222223221
Q ss_pred ccccceeeE---cCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc-ceeecCCcceeE
Q 046828 251 NIGYGPMAV---GPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA-GLINLGDMGYKT 326 (627)
Q Consensus 251 ~~~~~~iAl---~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~-gl~~lg~~g~~~ 326 (627)
...+-+ -|++||.+....-+.+|.+..+|. -+..|.+. +.|-+ ...|+
T Consensus 197 ---F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~----------------~~~~~~~~--~~L~~~~~~~M------- 248 (609)
T KOG4227|consen 197 ---FYTAEFHPETPALILVNSETGGPNVFDRRMQAR----------------PVYQRSMF--KGLPQENTEWM------- 248 (609)
T ss_pred ---ceeeeecCCCceeEEeccccCCCCceeeccccc----------------hHHhhhcc--ccCcccchhhh-------
Confidence 111222 358899887654444444332210 00000000 00000 00000
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE-EEEeccCC-------CCeEEEEECCCCC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV-ISQFRAHT-------SPISALCFDRSGT 398 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~-l~~~~aH~-------~~Is~laFspdG~ 398 (627)
...|+ |.|+ +|.+ -..----.+||+.+.++ +..+ .|. ..|-+++|--|-+
T Consensus 249 -~~~~~---~~G~-------------Q~ms----iRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~ 306 (609)
T KOG4227|consen 249 -GSLWS---PSGN-------------QFMS----IRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT 306 (609)
T ss_pred -heeeC---CCCC-------------eehh----hhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeeccee
Confidence 00110 1110 1110 01111234688877543 2223 232 2477889987766
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc----ccCCCCc--eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQ----TYDWTSS--HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 399 lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~----~~~~~~~--~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
++|+|++=. |++|.+ |.... .+...+ +...+.. ...-+...|||. ..+..+.|+|-...|++++-...
T Consensus 307 -v~tGSD~~~-i~~Wkl-P~~~d--s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR-Sv~NQVRF~~H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 307 -VATGSDHWG-IHIWKL-PRAND--SYGFTQIGHDEEEMPSEIFIEKELTVLRGHR-SVPNQVRFSQHNNLLVSSGVENS 380 (609)
T ss_pred -eeccCcccc-eEEEec-CCCcc--ccCccccCcchhhCchhheecceeEEEeccc-ccccceeecCCcceEeccchhhh
Confidence 899999865 899999 43321 121111 1122222 123344568885 46899999999999999999999
Q ss_pred EEEEEcCC
Q 046828 473 CHIFVLTP 480 (627)
Q Consensus 473 vhIw~i~~ 480 (627)
++||.-..
T Consensus 381 ~KlWS~~r 388 (609)
T KOG4227|consen 381 FKLWSDHR 388 (609)
T ss_pred eecccccc
Confidence 99997543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00088 Score=69.85 Aligned_cols=93 Identities=14% Similarity=0.233 Sum_probs=64.3
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-----------------------------------C
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI-----------------------------------H 406 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-----------------------------------d 406 (627)
+.+-.|.||.+.+.+.. .++-....+.-++|+|||++.|.++. |
T Consensus 111 eF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 111 EFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred cceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 35667889998876543 23322345688899999999888865 3
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
|..+-|||.--+ -+++...||. .|..++|||.+++||+|+.|+.++|.+
T Consensus 190 g~~laVwd~~Le-------------------ykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 190 GNWLAVWDNVLE-------------------YKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CcEEEEecchhh-------------------heeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 444445553211 1344455654 389999999999999999999999844
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0023 Score=66.58 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=61.6
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce---eEEEEEeecCCcCcEEEEEEc
Q 046828 382 RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH---VHLYKLHRGMTSAVIQDICFS 458 (627)
Q Consensus 382 ~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~---~~l~~l~rG~t~a~I~sIaFS 458 (627)
+.+.+.|.+|.|.|++-+||++|.||. .|||...- ... .... +...|.+.. +...++. .....|..+.||
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayI-K~V--dekp-ap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs 215 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYI-KGV--DEKP-APTPWGSKMPFGQLMSEAS--SSGGWVHGVLFS 215 (361)
T ss_pred CccccceeeeeccCCcceecccccCcc-eeEEEEee-ecc--ccCC-CCCCCccCCcHHHHHHhhc--cCCCceeeeEeC
Confidence 367889999999999999999999998 79995320 000 0000 011222221 1223332 233569999999
Q ss_pred cCCCEEEEEeCCCeEEEEEcC
Q 046828 459 HYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 459 pDg~~Las~S~dgTvhIw~i~ 479 (627)
|+|..||-.+.|+++-+=+-.
T Consensus 216 ~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCCEeeEecCCCceEEeecC
Confidence 999999999999999876654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.028 Score=61.39 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=52.9
Q ss_pred EEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccccee
Q 046828 181 AVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPM 257 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~i 257 (627)
.|-|||.++++.-.-.+--+.|.+|.+++ +.++++.+. +|.++|+.++... .+.-. - .|+ ..-|
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~idkS-~-----~~l------Itdf 449 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKS-E-----YGL------ITDF 449 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-Eeccc-c-----cce------eEEE
Confidence 58999999988655555557899999987 678887665 8999999998642 22111 0 011 2235
Q ss_pred eEcC--ceEEEcCCC
Q 046828 258 AVGP--RWLAYASNN 270 (627)
Q Consensus 258 Al~~--r~LAy~~~~ 270 (627)
+++| ||+||+-..
T Consensus 450 ~~~~nsr~iAYafP~ 464 (668)
T COG4946 450 DWHPNSRWIAYAFPE 464 (668)
T ss_pred EEcCCceeEEEecCc
Confidence 6655 999999643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=72.96 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=62.3
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
.|.+.|--+.....+...++|.+-|.++.|++...++++|++|-. ++|||-. |. .++.-
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~--------G~------------~Lf~S 223 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQ--------GA------------NLFTS 223 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeeccc--------Cc------------ccccC
Confidence 345666666655566778999999999999999999999999987 8999964 32 33322
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEE
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCH 474 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvh 474 (627)
. -+ ...|++|+|.|| +.++.+|. .|.+
T Consensus 224 ~-~~-ey~ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 224 A-AE-EYAITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred C-hh-ccceeeeeeccc-cceeeeee-eeee
Confidence 1 11 234999999999 66666653 3444
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.5e-05 Score=80.10 Aligned_cols=230 Identities=20% Similarity=0.326 Sum_probs=150.0
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
..++++++..+-+.|||=.-.. ...+- +...|.-++|+|-. +|++.+ .+
T Consensus 181 neq~~AVAQK~y~yvYD~~GtE--lHClk-~~~~v~rLeFLPyH--------------fLL~~~-~~------------- 229 (545)
T KOG1272|consen 181 NEQFFAVAQKKYVYVYDNNGTE--LHCLK-RHIRVARLEFLPYH--------------FLLVAA-SE------------- 229 (545)
T ss_pred chHHHHhhhhceEEEecCCCcE--Eeehh-hcCchhhhcccchh--------------heeeec-cc-------------
Confidence 3678899999999999955321 23333 34567778888764 233222 11
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecCc--EEEEE-eCCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSPR--IVAVG-LAAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~~--~LaV~-~~~~I~i~D~~t~e~~~tl~ 235 (627)
.+-++.-|..+|+.|..+.-+ ..+..+.-||. +|-+| ..++|-+|....-|.+-.++
T Consensus 230 -------------------~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 230 -------------------AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred -------------------CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 144888899999999998754 47888888884 44455 35689999999999888888
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+|..| +..+|+.+ +++|.
T Consensus 291 cH~g~-------------V~siAv~~~G~YMaT----------------------------------------------- 310 (545)
T KOG1272|consen 291 CHRGP-------------VSSIAVDRGGRYMAT----------------------------------------------- 310 (545)
T ss_pred hcCCC-------------cceEEECCCCcEEee-----------------------------------------------
Confidence 88765 44455532 33332
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
++.|..|+|||+.+-..+.++.. ..+.+.++|
T Consensus 311 -----------------------------------------------tG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~ 342 (545)
T KOG1272|consen 311 -----------------------------------------------TGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSL 342 (545)
T ss_pred -----------------------------------------------cccccceeEeeeccccccceeec-CCCcccccc
Confidence 24577899999998877766665 567899999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeE
Q 046828 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTv 473 (627)
|.-|.+ |.+- |..+.||.=.-.. ++.. ...|--++ ....|.++-|.|-...|.+|-..|-.
T Consensus 343 SqkglL-A~~~--G~~v~iw~d~~~~----s~~~----------~~pYm~H~--~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 343 SQKGLL-ALSY--GDHVQIWKDALKG----SGHG----------ETPYMNHR--CGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred ccccce-eeec--CCeeeeehhhhcC----CCCC----------Ccchhhhc--cCcccccceeccHHHeeeccccCCce
Confidence 988854 3332 4568999532111 1100 11221111 22369999999999999999887765
Q ss_pred EEEEcCCCCCeeecc
Q 046828 474 HIFVLTPFGGETVLQ 488 (627)
Q Consensus 474 hIw~i~~~gg~~~~~ 488 (627)
-|. -|-.|.+++.
T Consensus 404 sil--VPGsGePN~D 416 (545)
T KOG1272|consen 404 SIL--VPGSGEPNYD 416 (545)
T ss_pred eEe--ccCCCCCCcc
Confidence 543 2444554443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.13 Score=62.66 Aligned_cols=98 Identities=12% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC--CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH--GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d--Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
--.++|||-+ |....+-..-.+--.+|+|-|+|.+||+.... .+.|.+|.- + |- ...-+
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr--N------GL----------rhgeF 296 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER--N------GL----------RHGEF 296 (928)
T ss_pred eeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec--C------Cc----------EeeeE
Confidence 3579999987 44333333222234578999999999998862 244566652 2 21 01234
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.++.......|..|+|++||..||+.-.|. |.+|-..-|
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 454323345699999999999999987555 999988765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0078 Score=66.70 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
+..|.++|+.+++ ...+..+........|+|||+.|+-.|..+..-+||-+... .|. ..++.
T Consensus 256 ~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-----~g~----------~~rlt-- 317 (419)
T PRK04043 256 QPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-----SGS----------VEQVV-- 317 (419)
T ss_pred CcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-----CCC----------eEeCc--
Confidence 3567788887765 33444343323345799999988887764332455544211 221 01211
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCC-------CeEEEEEcCCCCCe
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSR-------GTCHIFVLTPFGGE 484 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~d-------gTvhIw~i~~~gg~ 484 (627)
..|. ...+|||||++|+..+.. +..+||-++..++.
T Consensus 318 ~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 318 FHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred cCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 1132 124899999999988865 33566666554443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00034 Score=85.51 Aligned_cols=89 Identities=21% Similarity=0.331 Sum_probs=66.6
Q ss_pred CCCeEEEEECCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIVSR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.++.|.+||.--. ..+.+ .+|.+.+++++|-|.-++|.+|+.+|. |.|||+. .
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~r-q---------------------- 2367 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIR-Q---------------------- 2367 (2439)
T ss_pred CCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc-EEEeehH-H----------------------
Confidence 5678999996432 22333 899999999999999999999999999 7999996 1
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.+| | | .++. +. .-.++..++.+|+++||+++.++-.
T Consensus 2368 rql-~-h---~~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2368 RQL-R-H---TFQA--LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred HHH-H-H---Hhhh--hh-hhheeeccCcccceEEEEccccchh
Confidence 111 1 1 1222 22 4468999999999999999987543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.003 Score=68.65 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=84.8
Q ss_pred CCCCC-eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAG-MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG-~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+..|| .+-|+|..+++ +..+...-+.|.+|+.+|||+.++.|-..+. |-+.|+. +|. .+
T Consensus 377 gt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vidid-------ngn-----------v~ 436 (668)
T COG4946 377 GTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDID-------NGN-----------VR 436 (668)
T ss_pred eccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEec-------CCC-----------ee
Confidence 45677 79999999876 4567777789999999999999999988876 6777886 443 23
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCC----eEEEEEcCCCCCeeecccccccccCCCCCCCc
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG----TCHIFVLTPFGGETVLQIQNSHVDRPTLSPVL 503 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg----TvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~ 503 (627)
+.+..| .+-|.+++|+|+++|||-+=-+| .||||++.. +....+.+-+++.-.|.+.|-.
T Consensus 437 ~idkS~---~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 437 LIDKSE---YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred Eecccc---cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEecCCcccccCcccCCCC
Confidence 433222 23599999999999999876665 689999863 3333444444444444555543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.06 Score=58.20 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCCeEEEEECCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHT-SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~-~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+|.|..+|..+++.+..+.... ........ .|.+|.+++.+|. +++||.. +|+ .++
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~-------tG~------------~~~ 344 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRE-------DGS------------FVA 344 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECC-------CCC------------EEE
Confidence 56778888888887665553211 11122122 3678889999997 7899975 342 555
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
++.-+.. ....+.++. |+ .|.+++.||+++.|.
T Consensus 345 ~~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 345 RLKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred EEEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 5532221 111222333 33 488999999998873
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00083 Score=79.75 Aligned_cols=96 Identities=11% Similarity=0.290 Sum_probs=71.6
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
|..+ |..++++..|...|..++.++.- .+++|||+||+ |+||++.... + .+. .......|.. .
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~--~~~-------s~rS~ltys~----~ 1097 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-G--EGG-------SARSELTYSP----E 1097 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-c--Ccc-------eeeeeEEEec----c
Confidence 4433 56789999999998888887765 99999999998 7999986321 1 111 0011123332 2
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..++..+.+-+.+..+|+++.||.|++++++.+
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 346899999999999999999999999999986
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0031 Score=68.72 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=53.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce-eEEEEEeecCCcCc-EEEEEE-ccCCC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH-VHLYKLHRGMTSAV-IQDICF-SHYSQ 462 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~-~~l~~l~rG~t~a~-I~sIaF-SpDg~ 462 (627)
--|++++|+.+|.-|..+-.|-. |.+|. +... .|. +.+..+.. ..+.+...||.+.. |..+-| -|.+.
T Consensus 337 v~ITgl~Ysh~~sElLaSYnDe~-IYLF~--~~~~---~G~---~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE 407 (559)
T KOG1334|consen 337 VNITGLVYSHDGSELLASYNDED-IYLFN--KSMG---DGS---EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE 407 (559)
T ss_pred ccceeEEecCCccceeeeecccc-eEEec--cccc---cCC---CCCCCcchhhccchhhcccccccccceeeeccCccc
Confidence 35999999987766555555543 78884 2321 121 11111100 11222245666654 888865 78999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 046828 463 WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 463 ~Las~S~dgTvhIw~i~~ 480 (627)
|+++||+=|-|.||+-+.
T Consensus 408 yVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 408 YVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred eEEecCccceEEEEecch
Confidence 999999999999999654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.004 Score=64.91 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=62.9
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
+.-.|..|.....++.|+|.+.++|++|.- ++|-||=.+.+ .+|=-+ .|+.+-. ...|.+++
T Consensus 92 ptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~E------------NdWWVs-KhikkPi----rStv~sld 153 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQE------------NDWWVS-KHIKKPI----RSTVTSLD 153 (361)
T ss_pred cceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEecc------------cceehh-hhhCCcc----ccceeeee
Confidence 445566678889999999999999999975 56888876511 233111 1232222 24599999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~ 479 (627)
|.|+.=.||+||.|+.++||..-
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred ccCCcceecccccCcceeEEEEe
Confidence 99999999999999999999864
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.014 Score=61.50 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=54.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC--------CcCcE---E
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM--------TSAVI---Q 453 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~--------t~a~I---~ 453 (627)
.+.|+.+.|+++|++++|-+-- + ++|||+.-.. .+ ...|.++.-. .+.-| .
T Consensus 272 IsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~------~p----------v~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEA------KP----------VETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hhhhhceEEccCCcEEEEeccc-e-eEEEeccccC------Cc----------ceEEeehHhHHHHHHHHhhccchhhee
Confidence 4579999999999999997765 4 8999994121 10 1223222100 01112 4
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.++||-|+.++++||-..-+|+|++..
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred EEEEcCCcceEecccccceEEEecCCC
Confidence 589999999999999999999999654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.01 Score=66.12 Aligned_cols=53 Identities=23% Similarity=0.470 Sum_probs=47.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCC-----CCEEEEEeCCCCEEEEEeCC
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRS-----GTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd-----G~lLaTaS~dGt~I~Vwdi~ 416 (627)
.+.|.+||+++++.+.+|.+|.+||++++|--+ |.++.+...-.+.|.+|-+.
T Consensus 163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 468999999999999999999999999999888 88888877767778999875
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.23 Score=49.46 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=61.2
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCC----------eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSP----------ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~----------Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
..+|.|..+|+.+++.+.....+..+ +..-.+..+| .+..++.+|.++.+ |+. +|
T Consensus 129 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~-------tg------ 193 (238)
T PF13360_consen 129 TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLA-------TG------ 193 (238)
T ss_dssp ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETT-------TT------
T ss_pred eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECC-------CC------
Confidence 34899999999999998888765433 1222233355 66667777776666 875 34
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+++.. .. .+.. ....++..|++.+.+++++.|++..
T Consensus 194 ------~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 194 ------EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp ------EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred ------CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 2345332 11 1222 2567888999998999999999875
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.045 Score=59.16 Aligned_cols=59 Identities=10% Similarity=-0.137 Sum_probs=43.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeC-----------CeEEEEeCCCCceeEEEEcCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLA-----------AQIYCFDALTLESKFSVLTYPV 239 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~-----------~~I~i~D~~t~e~~~tl~~~p~ 239 (627)
++|.+.|..+++.+.++.-...-..+ +++ +.|.++.. +.|.+||+.|++.+..|.--+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 78999999999999999843322234 776 55655544 6899999999999888854333
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00086 Score=44.86 Aligned_cols=38 Identities=26% Similarity=0.642 Sum_probs=34.3
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
+.+..+.+|...|.+++|++++.++++++.+|+ +++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 456778899999999999999999999999998 79996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.14 Score=57.23 Aligned_cols=89 Identities=13% Similarity=0.287 Sum_probs=64.4
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI---HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~---dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+-.|.|+|++- .++..|. .+|=+++-|||.|.+|+.|+- .|. |-|||+. .. .++
T Consensus 293 PAkvtifnlr~-~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~-n~------------------K~i 349 (566)
T KOG2315|consen 293 PAKVTIFNLRG-KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVP-NR------------------KLI 349 (566)
T ss_pred cceEEEEcCCC-CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEecc-ch------------------hhc
Confidence 45688888864 4555554 567789999999999999876 466 7999985 21 133
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeC------CCeEEEEEcC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSS------RGTCHIFVLT 479 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~------dgTvhIw~i~ 479 (627)
.++. .+.-.-+.|+|||+|+++++. |+.++||+..
T Consensus 350 ~~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 350 AKFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 3332 122345789999999998876 7889999864
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0025 Score=66.62 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=67.0
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..+++|.+|++...+-.+.|..-..++++++|||||+.|.+-|+=---|.||.+... ..+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--------------------~~~ 127 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--------------------KGY 127 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc--------------------eeE
Confidence 468899999999998889999889999999999999766555543334899998621 122
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRG 471 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dg 471 (627)
-+. +..+.+..++|.|||++.|+.+.+.
T Consensus 128 ~~~--~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 128 LLP--HPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred Eec--ccccCceeEEECCCCceeeeeeccc
Confidence 222 2233479999999999999988753
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.054 Score=66.77 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=52.0
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe-ecC--------Cc---CcEEEEE
Q 046828 389 SALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH-RGM--------TS---AVIQDIC 456 (627)
Q Consensus 389 s~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~-rG~--------t~---a~I~sIa 456 (627)
..|+|+++|.++++-+.+++ |++||.. ++ .+..+. .|. .. .....|+
T Consensus 807 ~Gvavd~dG~LYVADs~N~r-IrviD~~-------tg-------------~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa 865 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHK-IKKLDPA-------TK-------------RVTTLAGTGKAGFKDGKALKAQLSEPAGLA 865 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCE-EEEEECC-------CC-------------eEEEEeccCCcCCCCCcccccccCCceEEE
Confidence 57899999998777777765 8999974 11 111110 010 00 1368899
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+++||+.+++-+.+++|++|+++...
T Consensus 866 vd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 866 LGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCc
Confidence 99999999999999999999997643
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.26 Score=53.31 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+|.+..+|.++++.+-.... .. ..... .++..|..++.+|. +..+|.. +|. .+++
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~-l~~~d~~-------tG~------------~~W~ 304 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGV-VVALDRR-------SGS------------ELWK 304 (377)
T ss_pred cCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCe-EEEEECC-------CCc------------EEEc
Confidence 567899999999887766552 11 11222 24667777888887 7889975 342 4444
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
... .....+.+... .+..|.+++.+|.+++|+...
T Consensus 305 ~~~-~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 305 NDE-LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ccc-ccCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 321 11111111122 467899999999999998654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.12 Score=59.57 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=88.7
Q ss_pred eeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcC--CCCCEEEEEEccCc
Q 046828 70 FDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR--NSHPLLLVVACDEA 147 (627)
Q Consensus 70 Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~--~~rpLlavv~~d~~ 147 (627)
|...|+++ .-++.-|..+-+-|-|.-..+- .+.+..|...|..+++.|.|... |-++ ...++||+ .|-
T Consensus 18 ~~A~Dw~~---~GLiAygshslV~VVDs~s~q~-iqsie~h~s~V~~VrWap~~~p~---~llS~~~~~lliAs--aD~- 87 (1062)
T KOG1912|consen 18 RNAADWSP---SGLIAYGSHSLVSVVDSRSLQL-IQSIELHQSAVTSVRWAPAPSPR---DLLSPSSSQLLIAS--ADI- 87 (1062)
T ss_pred ccccccCc---cceEEEecCceEEEEehhhhhh-hhccccCccceeEEEeccCCCch---hccCccccceeEEe--ccc-
Confidence 33345554 4588888888899999887663 45666788889999999888543 3344 24566654 232
Q ss_pred cCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEe------cCcEEE-EEeCCe
Q 046828 148 KNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRC------SPRIVA-VGLAAQ 219 (627)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~------s~~~La-V~~~~~ 219 (627)
.+.|.+||...+..+..|+.+. +|.++.+ ++++|+ .-....
T Consensus 88 -------------------------------~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~ 136 (1062)
T KOG1912|consen 88 -------------------------------SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST 136 (1062)
T ss_pred -------------------------------cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcE
Confidence 1569999999999999998664 7877776 344444 445668
Q ss_pred EEEEeCCCCceeEEEE
Q 046828 220 IYCFDALTLESKFSVL 235 (627)
Q Consensus 220 I~i~D~~t~e~~~tl~ 235 (627)
|.+|++.||++.+...
T Consensus 137 lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 137 LVLWNTDTGEKFWKYD 152 (1062)
T ss_pred EEEEEccCCceeeccc
Confidence 9999999999876653
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0041 Score=69.49 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=67.5
Q ss_pred EEEECCCCe--EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 368 VVKDIVSRS--VISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 368 ~IwD~~s~~--~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.+|+....+ .+.... ++.+.|.+.+++|+.+.|+.|.+||. |++||.. ++. .+..+.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~-------~~~-----------t~~~ka- 298 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTT-------RGV-----------TLLAKA- 298 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcC-------CCe-----------eeeeee-
Confidence 457765443 333333 67889999999999999999999998 7999975 121 011111
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.-....++|.|||-.+++++++|-+.+||+.-.
T Consensus 299 ----~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 299 ----EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ----cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 123788999999999999999999999998643
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.085 Score=55.96 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=57.9
Q ss_pred CeEEEEECCCCe-E--EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVSRS-V--ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s~~-~--l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..|.+|++...+ . .+.+..+ ..|.+|.- -+.+|+.++...- +.++..... + ..+.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~s-v~~~~~~~~------~------------~~l~ 164 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKS-VSLLRYDEE------N------------NKLI 164 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSS-EEEEEEETT------T------------E-EE
T ss_pred CEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccC-EEEEEEEcc------C------------CEEE
Confidence 456777766655 2 2222222 24444443 3668888887654 566654321 1 2355
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+-|-...-.+.++.|-.|++.++++..+|.+++|..++.
T Consensus 165 ~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 165 LVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 5555444445999999877789999999999999999754
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.35 Score=51.11 Aligned_cols=98 Identities=23% Similarity=0.336 Sum_probs=63.4
Q ss_pred CCeEEEEECCCCeEEEE--e--ccCCCCeEEEEECCCCCEEEEEeCCCCE------EEEEeCCCCCCCCCCCCCccccCC
Q 046828 364 AGMVVVKDIVSRSVISQ--F--RAHTSPISALCFDRSGTLLVTASIHGNN------INIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~--~--~aH~~~Is~laFspdG~lLaTaS~dGt~------I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
+-.+...|..+++.+.+ + .-|.-.|.-|+++++|+.+.-.-.+|.. +-+++- |..
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---------g~~------ 201 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---------GGA------ 201 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---------CCc------
Confidence 34566678888887776 5 2377889999999999988777666641 111111 110
Q ss_pred CCceeEEEEE----eecCCcCcEEEEEEccCCCEEEEEeCCC-eEEEEEcCCC
Q 046828 434 TSSHVHLYKL----HRGMTSAVIQDICFSHYSQWIAIVSSRG-TCHIFVLTPF 481 (627)
Q Consensus 434 ~~~~~~l~~l----~rG~t~a~I~sIaFSpDg~~Las~S~dg-TvhIw~i~~~ 481 (627)
..+... .+++. .-|-+|+|+.|+.++|++|-+| .+.+|+..+-
T Consensus 202 ----~~~~~~p~~~~~~l~-~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 202 ----LRLLPAPEEQWRRLN-GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred ----ceeccCChHHHHhhC-CceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 011111 01111 1389999999999998888776 6899987653
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.85 E-value=1.3 Score=54.08 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCC
Q 046828 384 HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQ 462 (627)
Q Consensus 384 H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~ 462 (627)
....|..|+||+|+++||.--.+. |.+|-+. + .+|-+.+..+-.....+..+.|+| +..
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~-N-----------------YHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR--VQLWTRS-N-----------------YHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC--ceEEEee-C-----------------CEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 456789999999999999987664 8999764 1 123333333322222355699999 667
Q ss_pred EEEEEeCCCeEEEEEc
Q 046828 463 WIAIVSSRGTCHIFVL 478 (627)
Q Consensus 463 ~Las~S~dgTvhIw~i 478 (627)
.|.+.+..|.+.+++.
T Consensus 363 ~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEEecCCcEEEEEE
Confidence 7888888888876554
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.02 Score=61.12 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=79.7
Q ss_pred CCCCCCeEEEEECCC------CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 360 DTDIAGMVVVKDIVS------RSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s------~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
+++.|-.++||.+.. .+++.... .|.+.|.||+|+-..++|.++..+|++ ..-|++. .
T Consensus 73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V-I~HDiEt-------~------- 137 (609)
T KOG4227|consen 73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV-IKHDIET-------K------- 137 (609)
T ss_pred ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee-Eeeeccc-------c-------
Confidence 567888999999753 35555444 456899999999999999999999995 5678862 1
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..++-+........|+.+.-+|-...|++++.++.|-+|++...
T Consensus 138 -----qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 138 -----QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred -----eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 24555543333445999999999999999999999999999754
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.035 Score=64.85 Aligned_cols=102 Identities=10% Similarity=0.133 Sum_probs=69.4
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
...++.+|..+-+-.+|+....+ ..+..-..+.|.+++-.- | + ..+ +|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e-~r~~~v~a~~v~imR~Nn--------------r-~-lf~-G~t------------- 195 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKE-TRTTNVSASGVTIMRYNN--------------R-N-LFC-GDT------------- 195 (1118)
T ss_pred Ccceeecchhhheeeeeccccee-eeeeeccCCceEEEEecC--------------c-E-EEe-ecc-------------
Confidence 46677777888899999887553 233333344465555321 1 2 222 222
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe-CC---------eEEEEeCCCC
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL-AA---------QIYCFDALTL 228 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~-~~---------~I~i~D~~t~ 228 (627)
.++|.+-|+++-+.+|++. |...|.++.+....|+++. .. =|++||++++
T Consensus 196 -------------------~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 196 -------------------RGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred -------------------cceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence 2679999999999999999 5559999999998777653 22 1789999988
Q ss_pred cee
Q 046828 229 ESK 231 (627)
Q Consensus 229 e~~ 231 (627)
+.+
T Consensus 257 ral 259 (1118)
T KOG1275|consen 257 RAL 259 (1118)
T ss_pred hcc
Confidence 754
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.94 Score=48.33 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=28.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPS 418 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~ 418 (627)
..-....|+|+|++|+.+.+++..|.||.+.+.
T Consensus 291 ~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 291 QFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred cCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 334678899999999999999999999999754
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.052 Score=62.45 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=75.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC------CCE---EEEEeCCCCCCCCCCCCCccc
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH------GNN---INIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d------Gt~---I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
-|.+.|+|.|+|+.++..-+.|..|++.|.+|.|--...++ +.+.. |-+ +.|=|+. +|-
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslv-Sfsys~~n~~sg~vrN~l~vtdLr-------tGl---- 509 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLV-SFSYSHVNSASGGVRNDLVVTDLR-------TGL---- 509 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEE-EeeeccccccccceeeeEEEEEcc-------ccc----
Confidence 45688999999999999999999999999999997665544 44321 111 2344553 331
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+-++-.++.+.+.|..|.-|.-++|||+.=.|.-+.||++...
T Consensus 510 -------sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 510 -------SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred -------ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 12222225666667999999999999999999999999998653
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.7 Score=46.00 Aligned_cols=50 Identities=10% Similarity=0.250 Sum_probs=42.0
Q ss_pred cEEEEEECCCC-------ceEEEEecCCeEEEEEecCcEEEEEeCCeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSH-------NYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~-------~~V~tL~f~s~V~sV~~s~~~LaV~~~~~I~i~D~~t~e 229 (627)
+.|.+|++... +.+++.+++.+|++|..-...|+++...+|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 88999999985 456677789999999887777999999999999998777
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.049 Score=56.46 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=72.8
Q ss_pred CCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 362 DIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 362 ~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
...|.+.+.+.... +.+...++|.-++....|+-. -.++.||++||. +.-||+. .+ + .
T Consensus 140 ~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R-~p-----~------------~ 200 (339)
T KOG0280|consen 140 DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIR-IP-----K------------T 200 (339)
T ss_pred cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEec-CC-----c------------c
Confidence 34566665554444 334588999999999999864 468999999998 7999996 21 1 1
Q ss_pred EEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
.++.-.+-|+ +.|.+|.-|| +..+|++|+.|.+||+||...-
T Consensus 201 ~i~~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 201 FIWHNSKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeeecceeee-cceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 4554333344 3488887776 7899999999999999998743
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.2 Score=49.63 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=65.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
...|..-...|+++|+-+..+ .++-.+.--|+.+.+.|+ +.+| ++|...+.--
T Consensus 44 G~~l~~~~~~~V~~~~g~~~~---~l~~~~~~~V~~~~fSP~-------------~kYL--~tw~~~pi~~--------- 96 (561)
T COG5354 44 GTYLFSEHAAGVECWGGPSKA---KLVRFRHPDVKYLDFSPN-------------EKYL--VTWSREPIIE--------- 96 (561)
T ss_pred chheehhhccceEEccccchh---heeeeecCCceecccCcc-------------ccee--eeeccCCccC---------
Confidence 456677778899999988755 333334455666666654 3454 5665432100
Q ss_pred ccccCCCCCCCCCC-CCcCCcEEEEEECCCCceEEEEecCC-e--EE-EEEec--CcEEEEEeCCeEEEEeC
Q 046828 161 GLVRDGYDEPQPGN-VAMSPTAVRFYSLRSHNYVHVLRFRS-T--VY-MVRCS--PRIVAVGLAAQIYCFDA 225 (627)
Q Consensus 161 ~~~~~g~~~~~~~~-~~~~~~tV~lwdl~t~~~V~tL~f~s-~--V~-sV~~s--~~~LaV~~~~~I~i~D~ 225 (627)
|..+. +.-..+.+.+||..+|..|.++.... + .+ -++++ ..++|=.....++|+++
T Consensus 97 ---------pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~ 159 (561)
T COG5354 97 ---------PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI 159 (561)
T ss_pred ---------hhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec
Confidence 00001 11123569999999999999987654 3 33 34444 45555445668999997
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.66 Score=47.89 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=66.3
Q ss_pred CCCeEEEEEC--CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDI--VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~--~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.|.++++.++ ...+...+++. -.+..++.++|++++++..+... |-.|.|..+ + ..+
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgds~~-Vf~y~id~~------s------------ey~ 194 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGDSRR-VFRYAIDDE------S------------EYI 194 (344)
T ss_pred CCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecCCCc-ceEEEeCCc------c------------cee
Confidence 4444444444 44343333332 12788999999999999988766 567777521 1 122
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.+.+...|...=.+.+||.....+|+++.||++-|||+..-+-+
T Consensus 195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 22222223333578899999999999999999999999865544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.032 Score=61.75 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCCeEEEEECCCCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 363 IAGMVVVKDIVSRSVISQFRA-----HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~a-----H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
...+|+++|....+-++.++- ....+.+++..|.|..||.|=..|. |-+.|.. +|
T Consensus 849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc-i~~LDaR-------~G------------ 908 (1034)
T KOG4190|consen 849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC-IAILDAR-------NG------------ 908 (1034)
T ss_pred chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc-EEEEecC-------CC------------
Confidence 345677777777765555542 2345899999999999999999998 6777875 33
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEE-EEc
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHI-FVL 478 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhI-w~i 478 (627)
++..-.|-+. +....++ .|..+.|+.+..|.++-| |.-
T Consensus 909 -~vINswrpme-cdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 909 -KVINSWRPME-CDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred -ceeccCCccc-chhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 1111112111 1112222 355678888888888877 753
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.16 Score=56.65 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=60.7
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCC---eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSP---ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~---Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+...+.|||+.+|.....|..-.++ -.-..||.|++++|--..++ |.||+.. .- .
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s--isIyEtp-sf-------------------~ 337 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS--ISIYETP-SF-------------------M 337 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce--EEEEecC-ce-------------------e
Confidence 4457999999999888888763332 35578999999999877664 8999873 21 3
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
+++. +-..-..|.+..|||.+..||.-+-
T Consensus 338 lld~-Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 338 LLDK-KSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred eecc-cccCCccccCcccCCCcceEEEEcc
Confidence 3433 2223344899999999999997554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.076 Score=56.20 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=47.0
Q ss_pred cEEEEEECCCC-----ceEEEEecCCeEEEEEe---cC-cEEEEEeCCeEEEEeCCCCce---eEEEEcCCC
Q 046828 180 TAVRFYSLRSH-----NYVHVLRFRSTVYMVRC---SP-RIVAVGLAAQIYCFDALTLES---KFSVLTYPV 239 (627)
Q Consensus 180 ~tV~lwdl~t~-----~~V~tL~f~s~V~sV~~---s~-~~LaV~~~~~I~i~D~~t~e~---~~tl~~~p~ 239 (627)
+.|..+|||.+ .+.+.|.+++.|.++.. +. .++|+.++++|.+||.+-.++ +.+.++|-|
T Consensus 274 geI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN 345 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN 345 (425)
T ss_pred CcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc
Confidence 56899999865 67888999999888765 44 566777899999999998777 566666644
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.32 Score=50.92 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=55.3
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE----ee----cCCcCcE
Q 046828 381 FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL----HR----GMTSAVI 452 (627)
Q Consensus 381 ~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l----~r----G~t~a~I 452 (627)
|..-.+.|+.+.|+++|+++++-+-- + ++|||+.-.. .+ .....+ +. -..+..|
T Consensus 276 f~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k------~p----------ikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 276 FEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAK------NP----------IKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred HHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEeccccc------CC----------ceeechHHHHHHHHHhhhhccce
Confidence 44445789999999999999887765 4 8999985211 00 011100 00 0001113
Q ss_pred ---EEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 453 ---QDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 453 ---~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..|.||-|.+.+.+||.....-||.....|
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccccCC
Confidence 458999999999999999999999865543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.016 Score=63.95 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=63.9
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
.++.|.+|+..|.+++--.+..-+++||.|.| +++|.++|+... .|+. .+.+.. ..|+. .|.+|.
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKT-VKLWSik~EgD~--~~ts----------aCQfTY-~aHkk-~i~~ig 791 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKT-VKLWSIKPEGDE--IGTS----------ACQFTY-QAHKK-PIHDIG 791 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCce-EEEEEeccccCc--cccc----------eeeeEh-hhccC-ccccee
Confidence 47789999999998876667778899999988 799999877532 2221 234443 22332 499999
Q ss_pred EccCCCEEEEEeCCCeEEEEEc
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i 478 (627)
|=.|-++++++ ||-+|+||-
T Consensus 792 fL~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 792 FLADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred eeeccceeeec--cCcceeecc
Confidence 99999998765 999999983
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.044 Score=55.98 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEECCCCe-EEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCC-CC--CCCCCc-cccCC
Q 046828 360 DTDIAGMVVVKDIVSRS-VISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSS-KG--RSGSAS-QTYDW 433 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~-~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~-~~--~~g~~~-~~~~~ 433 (627)
.+.++|.|.|||..+.. ++..+++|..+|.-+-|.| ++..|.|+|+||.+ --||.....- .+ .++... -++|+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl-w~wdas~~~l~i~~~~s~~s~WLsgD~ 275 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL-WHWDASTTFLSISNQASVISSWLSGDP 275 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE-EEEcCCCceEEecCccccccccccCCc
Confidence 45789999999998874 4556789999999999999 68999999999984 5577531100 00 000000 01121
Q ss_pred CCceeEEEEEeecCCcCcEEEE-EEccCCCEEEEEeCCCeEEEEE
Q 046828 434 TSSHVHLYKLHRGMTSAVIQDI-CFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~a~I~sI-aFSpDg~~Las~S~dgTvhIw~ 477 (627)
... +.++ .+.-+.+..+| .|.--|..|+++++-+-|.+++
T Consensus 276 v~s---~i~i-~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 276 VKS---RIEI-TSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccc---eEee-eccccccceeeeeeeccCceEEeccccceEEEec
Confidence 111 1222 12223333444 4556677899999988888765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=6 Score=43.16 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=34.4
Q ss_pred cEEEEEECCCCceEEEEecCCe--------EEEEEe-----cCcEEEEEeCCeEEEEeCCCCceeEEE
Q 046828 180 TAVRFYSLRSHNYVHVLRFRST--------VYMVRC-----SPRIVAVGLAAQIYCFDALTLESKFSV 234 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~--------V~sV~~-----s~~~LaV~~~~~I~i~D~~t~e~~~tl 234 (627)
+.|.-+|.++|+.+.+.++..+ ...+.. ...+++++.++.++++|+.+++.+.+.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 5677788888887766543211 111111 234455566778999999999876553
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.11 Score=57.98 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=63.9
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI----------HGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~----------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
|.+|--.+-..++.|. |+ .|..+.|||.-++|+|=|. +|+.++||||. +|.-
T Consensus 233 I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~-------tG~l--------- 294 (698)
T KOG2314|consen 233 IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA-------TGLL--------- 294 (698)
T ss_pred eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc-------ccch---------
Confidence 6677555544444443 54 4899999999999999764 56779999997 4421
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.+-+...++.. ....=..||.|++|+|--.. .+|+||+...+..
T Consensus 295 -krsF~~~~~~~-~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l 338 (698)
T KOG2314|consen 295 -KRSFPVIKSPY-LKWPIFRWSHDDKYFARMTG-NSISIYETPSFML 338 (698)
T ss_pred -hcceeccCCCc-cccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence 01111112211 22334589999999998877 6899999877643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.092 Score=34.46 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=25.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
..|.++.|.++++++++++.|+++.+|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3599999999999999999999999995
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.8 Score=48.21 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=38.3
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
=.|+|||+.|+-+|+.+-.-+||-..+.+. . ...+.+.-|.. ..-.|||||++|+..+..
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~-----------~~riT~~~~~~----~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----Q-----------VTRLTFSGGGN----SNPVWSPDGDKIVFESSS 346 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCC-----c-----------eeEeeccCCCC----cCccCCCCCCEEEEEecc
Confidence 369999999998887654457776643321 0 12233322211 156799999999998854
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.057 Score=59.28 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=80.9
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
...+..|.+-|..|-|+..|+.|+++|+|-+ |.+||.. ++. ....+..||..- |..-.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~-vv~WdW~-------~~~------------~~l~f~SGH~~N-vfQaKF 193 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQ-VVVWDWV-------SGS------------PKLSFESGHCNN-VFQAKF 193 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccce-EEeehhh-------ccC------------cccccccccccc-hhhhhc
Confidence 4567889999999999999999999999987 7899985 221 445566787754 333346
Q ss_pred cc--CCCEEEEEeCCCeEEEEEcCCCCCee---ecccccccccCCCCCCCccCCCCCCC
Q 046828 458 SH--YSQWIAIVSSRGTCHIFVLTPFGGET---VLQIQNSHVDRPTLSPVLSVPWWSSP 511 (627)
Q Consensus 458 Sp--Dg~~Las~S~dgTvhIw~i~~~gg~~---~~~~h~s~v~~~~~~p~~~~~~~~~~ 511 (627)
=| +.+-|++++.||-|++=.+...+... .+..|..++..-.+.|-.+.+-|...
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g 252 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG 252 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccc
Confidence 55 55789999999999998887765443 45566665554445555555555444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.66 E-value=5 Score=39.67 Aligned_cols=57 Identities=9% Similarity=0.030 Sum_probs=42.2
Q ss_pred cEEEEEECCCCceEEEE-ecCC------eEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVL-RFRS------TVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL-~f~s------~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|..+|+++|+.+.+. .... ......+....++++. .+.|+++|+.|++.+.....
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 56999999999999984 4331 2234445566777776 78999999999999888765
|
... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=4.7 Score=41.87 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=38.9
Q ss_pred CCCCCeEEEEECCCCeEEE-----EeccCCCCeEEEEECCCCCE-EEEEeCCCCEEEEEeCC
Q 046828 361 TDIAGMVVVKDIVSRSVIS-----QFRAHTSPISALCFDRSGTL-LVTASIHGNNINIFRIM 416 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~-----~~~aH~~~Is~laFspdG~l-LaTaS~dGt~I~Vwdi~ 416 (627)
+.+||.+.|||+....... +-..|.+.|....|++-|.+ |.--|+.-.-++|-|+.
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 4589999999998764322 22357889999999987754 33344443346888875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=94.60 E-value=5.8 Score=40.06 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
|.|..+|.. ++....+. .-...+.|+|+|||+.|..+......|..|++.... +. + .....+..+.
T Consensus 115 g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~-----~~------~-~~~~~~~~~~ 180 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG-----GE------L-SNRRVFIDFP 180 (246)
T ss_dssp EEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT-----CC------E-EEEEEEEE-S
T ss_pred cceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccc-----cc------e-eeeeeEEEcC
Confidence 667777777 44333222 234568999999999887666555557777764211 10 0 0011223332
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+. .....+++..+|+..++.-..+.|++|+-+
T Consensus 181 ~~~--g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 181 GGP--GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSS--CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred CCC--cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 221 237889999999988888889999888754
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=55.94 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=72.4
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
|++.+..+.+....+..|..-|..|+|||... +|..+|.+.+ |+|+|+.... .+..|...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~-----------------~vssy~a~- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSC-----------------VVSSYIAY- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccce-----------------eeeheecc-
Confidence 78888777777777888999999999999988 7778888765 8999996221 01233321
Q ss_pred cCCcCcEEEEEEccCCC-EEEEEeCCCeEEEEEcCCCCCee
Q 046828 446 GMTSAVIQDICFSHYSQ-WIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~-~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
..|++++|.-|.. +|..|-.+|.|.|||+....+..
T Consensus 236 ----~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 236 ----NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred ----CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 3499999998665 66677789999999998766543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.13 Score=39.09 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=28.6
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+.|..++|+|....||+++.||.|.||+++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999984
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.17 Score=63.14 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=86.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCC--------------CC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKG--------------RS 424 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~--------------~~ 424 (627)
+++.||.|++|.-..++.+..++ +-.+.|+.+.|+.+|.....+.-||. +-+|++.|.+-.+ .+
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s 2303 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGS 2303 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeeh
Confidence 56799999999999999888887 44588999999999999999999998 7999987643110 00
Q ss_pred C--CCccc------cCCCC----ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 425 G--SASQT------YDWTS----SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 425 g--~~~~~------~~~~~----~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
+ +.+++ ..|.+ ..+.+.+. |. ..++++++-|.-+.|.+|+.+|-|.|||+....-
T Consensus 2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~---H~-~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC---HD-GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred hhhccccCCCCCcccchhcccCcccceeeee---cC-CCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 0 00011 12222 11223322 22 2379999999999999999999999999986543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.12 Score=59.00 Aligned_cols=99 Identities=16% Similarity=0.294 Sum_probs=72.1
Q ss_pred CCCCCCeEEEEECCCC---------------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 046828 360 DTDIAGMVVVKDIVSR---------------SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRS 424 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~---------------~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~ 424 (627)
.++.||.++|..+.+. ..-.++.+|...|.-+.|+...+.|-|.+.+|- |.||-+- .
T Consensus 31 cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl-IiVWmly-------k 102 (1189)
T KOG2041|consen 31 CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL-IIVWMLY-------K 102 (1189)
T ss_pred eccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce-EEEEeee-------c
Confidence 4567888887765432 123467899999999999999999999999995 8999875 3
Q ss_pred CCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 425 GSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 425 g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
|+ | .-+.-......+|.+++|..||+.|++.-.||-|.|=.+
T Consensus 103 gs------W------~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 103 GS------W------CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred cc------H------HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 32 1 111111112356999999999999999999998865444
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.14 Score=58.48 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=75.8
Q ss_pred CCCCCeEEEEECCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQ-FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~-~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+...|.|.+|.-..++.+.. ..+-...+..++.|++..+.|.|+..|. |-||.+.. .. . ..
T Consensus 51 GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~-~~-----p-----------~~ 112 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNK-EL-----P-----------RD 112 (726)
T ss_pred ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhc-cC-----C-----------Cc
Confidence 45678999999877654322 2223456778899999999999999997 78998862 11 0 12
Q ss_pred EEEEeecCC--cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 440 LYKLHRGMT--SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t--~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+..+.+++. ..+|++++||+|++.|.+|.+.|+|+.-.++.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 333445554 45699999999999999999999999998876
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=94.15 E-value=5.9 Score=41.34 Aligned_cols=115 Identities=15% Similarity=0.250 Sum_probs=65.8
Q ss_pred CCCeEEEEECC-----CCeEEEEec--cC-CCCeEEEEECCCCCEEEEEeCC-CC---------EEEEEeCCCCCCCCCC
Q 046828 363 IAGMVVVKDIV-----SRSVISQFR--AH-TSPISALCFDRSGTLLVTASIH-GN---------NINIFRIMPSSSKGRS 424 (627)
Q Consensus 363 ~dG~V~IwD~~-----s~~~l~~~~--aH-~~~Is~laFspdG~lLaTaS~d-Gt---------~I~Vwdi~p~~~~~~~ 424 (627)
..|.++-|-+. ..+....|. .| ...|.++.|+|.-++|..|+.. .. -+..|++..... -
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P---y 193 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP---Y 193 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC---c
Confidence 55555544432 223334433 33 6789999999998887776542 11 145676642100 0
Q ss_pred CCC-ccc-cCCCCc----------eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 425 GSA-SQT-YDWTSS----------HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 425 g~~-~~~-~~~~~~----------~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
... .+. .+.... ..+++- +++.....|..|+.||||+.||+...+|++-||++...
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEccccCccccccccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 000 000 111100 011111 23434456999999999999999999999999999654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.96 Score=45.78 Aligned_cols=98 Identities=26% Similarity=0.275 Sum_probs=60.9
Q ss_pred CeEEEEECCCCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeCCCCE-----EEEEeCCCCCCCCCCCCCccccCCC
Q 046828 365 GMVVVKDIVSRSVISQFRA-----HTSPISALCFDRSGTLLVTASIHGNN-----INIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~a-----H~~~Is~laFspdG~lLaTaS~dGt~-----I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
+.+.++|+.+++....+.. .....+.++++|+|.+.+|-+..... =+||.+.+. +
T Consensus 60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~--------- 124 (246)
T PF08450_consen 60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD------G--------- 124 (246)
T ss_dssp TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT------S---------
T ss_pred CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC------C---------
Confidence 3456669988854333332 23457889999999998887765320 135555432 1
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEE-EEeCCCeEEEEEcCCCCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIA-IVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La-s~S~dgTvhIw~i~~~gg 483 (627)
.+..+..+.. .-+.|+|+||++.|. +-+..+.|..|+++..++
T Consensus 125 ----~~~~~~~~~~--~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 125 ----KVTVVADGLG--FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp ----EEEEEEEEES--SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred ----eEEEEecCcc--cccceEECCcchheeecccccceeEEEecccccc
Confidence 2222333332 368999999999776 567788899999876554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.9 Score=48.11 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=53.5
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC----eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA----QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~----~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
..+.++|+.+++.-..+.|...-..-+|++ +.|+.+... .||++|+.+.+.. .+..... .+ .
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~g----------i~-~ 285 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFG----------IN-T 285 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCc----------cc-c
Confidence 458899999999888888888777888888 777766532 4999999887733 3433211 11 0
Q ss_pred cceeeEcCceEEEcCC
Q 046828 254 YGPMAVGPRWLAYASN 269 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~ 269 (627)
.+.++-.+++|+|.++
T Consensus 286 ~Ps~spdG~~ivf~Sd 301 (425)
T COG0823 286 SPSWSPDGSKIVFTSD 301 (425)
T ss_pred CccCCCCCCEEEEEeC
Confidence 1225556689998864
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.45 Score=49.35 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=45.9
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
++.+.+|++||.--+. .|-|=..+.+. .+.. ...+..+ .....-..++||||+..||.+.+.
T Consensus 3 ~~~~~~Gk~lAi~qd~--~iEiRsa~Ddf--------------~si~-~kcqVpk-D~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ--CIEIRSAKDDF--------------SSII-GKCQVPK-DPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred eeecCCCcEEEEEecc--EEEEEeccCCc--------------hhee-EEEecCC-CCCchheEEEECCCCcEEEEEcCC
Confidence 5778999999886544 34433322111 1111 1112211 112247889999999999999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
|||++||+.-
T Consensus 65 G~i~vfdl~g 74 (282)
T PF15492_consen 65 GTIRVFDLMG 74 (282)
T ss_pred CeEEEEeccc
Confidence 9999999864
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.29 Score=55.46 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=61.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe-ecCCcCcEEEEEEccCCCEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH-RGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~-rG~t~a~I~sIaFSpDg~~L 464 (627)
..|-.+-|+|.=.++|++..+|+ +-+.++. . ++++.+- +|.. . ..+++|.|||+.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~-------------------qRlwtip~p~~~-v-~~sL~W~~DGkll 77 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGE-LLIHRLN-W-------------------QRLWTIPIPGEN-V-TASLCWRPDGKLL 77 (665)
T ss_pred cceEEEEEcCccchhheeccCCc-EEEEEec-c-------------------ceeEeccCCCCc-c-ceeeeecCCCCEE
Confidence 45777889999999999999998 4566653 1 3666665 4543 1 2599999999999
Q ss_pred EEEeCCCeEEEEEcCCCCCeee
Q 046828 465 AIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 465 as~S~dgTvhIw~i~~~gg~~~ 486 (627)
|++=.||||.|-|++..++...
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EEEecCCeEEEEEccCCCceec
Confidence 9999999999999998776553
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.53 Score=54.28 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=71.7
Q ss_pred CCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 360 DTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
....|-.|..||+.+. .++..+..-.+.-+.++|+- ++..|| |.+|..|+|||+. . |+
T Consensus 132 tcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg~~i~vwd~r-~------gs----------- 191 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHGNDIFVWDLR-K------GS----------- 191 (1081)
T ss_pred eccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccCCceEEEecc-C------CC-----------
Confidence 4567888999999886 45666655555667788886 566664 4567789999986 2 22
Q ss_pred eEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+..+.+ + .+.|+.|+|.. --..+.+.+.||||+.|+-+...
T Consensus 192 ~pl~s~K~-~-vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 192 TPLCSLKG-H-VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred cceEEecc-c-ceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 14555544 3 35699999976 33467789999999999987543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.17 Score=56.90 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=44.8
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMP 417 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p 417 (627)
-+..||.|.+||...+. ..+..+.-..+.++|+|+|.+++.|+..|. +.+||+.-
T Consensus 276 lGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~AL 330 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMAL 330 (545)
T ss_pred EEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeec
Confidence 46789999999998763 333334456788999999999999999998 79999864
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.29 Score=55.49 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=47.8
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeE-EEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPIS-ALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is-~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
....+|.|.+.-+. -+.+.+|.-|..++. +++|.|||++||.|=.||+ |++-|+.
T Consensus 37 ~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve 92 (665)
T KOG4640|consen 37 TRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVE 92 (665)
T ss_pred eeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEcc
Confidence 34578989998887 567888887887877 9999999999999999998 8999987
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.36 Score=50.25 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCCCCCeEEEEECC-CCeEEEE-eccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIV-SRSVISQ-FRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~-s~~~l~~-~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.++.||.+.-||++ .++.+-+ .+-|+..|.+|.=+| .+.+|+|||-|-+ |++||+.
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtR 241 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTR 241 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehh
Confidence 46799999999998 3444444 678999999988876 5999999999976 8999986
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.24 Score=52.56 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=75.1
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.+.+-.|-+-|++++-.. .|. ..+.|-++.|.-.+.++..|...|. |-+.|+.... .|. .++.
T Consensus 230 ~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rn----qG~----------~~~a 292 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRN----QGN----------GWCA 292 (425)
T ss_pred ccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecc----cCC----------Ccce
Confidence 345667888898887432 344 5678999999999999999999998 6888986221 121 1344
Q ss_pred EEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 441 YKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
..+. |.. .|+++-.=. ++++|.+++.+|+|.+||+........+.
T Consensus 293 ~rly--h~S-svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~ 338 (425)
T KOG2695|consen 293 QRLY--HDS-SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM 338 (425)
T ss_pred EEEE--cCc-chhhhhhhccccceEeeccCcCceeEeeehhhhccccee
Confidence 5453 232 356654444 67899999999999999987665533333
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.75 E-value=11 Score=40.22 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=37.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.-|.|.-+|. .+..+..+..|-.--+.|+|||||+.|..+......|+-|++.
T Consensus 141 ~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 141 PTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 3455555554 4555666666555557899999999999998876657777765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.3 Score=37.20 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=28.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..+|.+++|+|...+||.++.+|. |.||++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEECC
Confidence 457999999999999999999998 7899873
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.47 Score=50.39 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=57.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC-----------cCcEE
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT-----------SAVIQ 453 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t-----------~a~I~ 453 (627)
..-|++|.|+.+|.+||||...|+ +-+|.-.... .| + -..+.....|. .-+|.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~----~~----------e-y~~~t~fqshepEFDYLkSleieEKin 88 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGR-VVLFEREKLY----KG----------E-YNFQTEFQSHEPEFDYLKSLEIEEKIN 88 (433)
T ss_pred hcceeeEEeecccceEeecCCCCe-EEEeeccccc----cc----------c-eeeeeeeeccCcccchhhhhhhhhhhh
Confidence 346899999999999999999999 5778643221 11 0 01222211121 12488
Q ss_pred EEEEccCCC--EEEEEeCCCeEEEEEcCCCCCe
Q 046828 454 DICFSHYSQ--WIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 454 sIaFSpDg~--~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.|.|-+++. .+..++.|.||++|.+...+..
T Consensus 89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k 121 (433)
T KOG1354|consen 89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSK 121 (433)
T ss_pred hceecCCCCccEEEEecCCcceeeeeeeccccc
Confidence 999998765 5667889999999999876543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.9 Score=46.67 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
++.|+.|+|-....--.+..|- +|+.-|+.|+.-++ .+|+++|-|+| +++||+.
T Consensus 169 aDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~ 223 (390)
T KOG3914|consen 169 ADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDIT 223 (390)
T ss_pred ecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEecc
Confidence 4567777776555444455554 79999999999765 45899999998 7999997
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.25 Score=54.68 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=63.3
Q ss_pred EEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 369 VKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 369 IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
+|.-.+...-..+.+-.-|+..++|||-|++|+.....| |.+|.-. . + -++.+++
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~-~------~------------~~l~~~~---- 70 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGP-S------K------------AKLVRFR---- 70 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc--eEEcccc-c------h------------hheeeee----
Confidence 355555544455555677899999999999999988776 7899753 1 1 1343332
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCe---------------EEEEEcCC
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGT---------------CHIFVLTP 480 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgT---------------vhIw~i~~ 480 (627)
...|+.+.|||.++||.+-+..+. +.|||+..
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s 117 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS 117 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC
Confidence 346999999999999999877665 77888764
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=92.34 E-value=15 Score=37.65 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=27.3
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeC
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPL 122 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~ 122 (627)
++-|++|.+.|+-++++.......+++.... |.-+.+++.
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~--I~ql~vl~~ 46 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSS--ITQLSVLPE 46 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEeecce--EEEEEEecc
Confidence 5677888999999999955454556665433 666666654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=92.23 E-value=8 Score=41.08 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCCeEEEEECC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEe
Q 046828 363 IAGMVVVKDIV-SRSVISQFRAHTSPISALCFDRSGTLLVTAS 404 (627)
Q Consensus 363 ~dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspdG~lLaTaS 404 (627)
..|.|-|||.. +.+.+..|..|-----.|.+.|||+.|+.|-
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 46899999999 7788899988765555678999998888873
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=4.2 Score=44.39 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=36.3
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEe-cCcEEEEEeCCeEEEEeCCCCceeEE
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRC-SPRIVAVGLAAQIYCFDALTLESKFS 233 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~-s~~~LaV~~~~~I~i~D~~t~e~~~t 233 (627)
++.+.-+|+++|+.+-+.++.+.. .+.. ..+++++..+++++++|+.+++.+..
T Consensus 265 ~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 265 NGNLVALDLRSGQIVWKREYGSVN-DFAVDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCeEEEEECCCCCEEEeecCCCcc-CcEEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 456777788888887776655422 2223 33555666678999999999986544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.9 Score=52.53 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=42.8
Q ss_pred cEEEEEECCCC-ceEEEEecC-CeEEEEEecC----cEEEEEeCCeEEEEeCC--CCceeEEEEc
Q 046828 180 TAVRFYSLRSH-NYVHVLRFR-STVYMVRCSP----RIVAVGLAAQIYCFDAL--TLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~-~~V~tL~f~-s~V~sV~~s~----~~LaV~~~~~I~i~D~~--t~e~~~tl~~ 236 (627)
+-|++||++.| .++++++.+ +.|+.++|++ +++..+.++.|+.||-. |-|..+++++
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 55999999876 568889854 5899999997 56777788899999865 3344555544
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=91.61 E-value=5.7 Score=40.69 Aligned_cols=48 Identities=13% Similarity=-0.062 Sum_probs=39.3
Q ss_pred CCceE--EEEecCCeEEEEEecCcEEEEEeCCeEEEEeCCCCceeEEEEc
Q 046828 189 SHNYV--HVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 189 t~~~V--~tL~f~s~V~sV~~s~~~LaV~~~~~I~i~D~~t~e~~~tl~~ 236 (627)
.|+.. .++++.+...++.+...+|++..++.|.||++.+++.++++..
T Consensus 216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 45444 3788888888899888788777778899999999999999865
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=91.50 E-value=2 Score=38.82 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=46.5
Q ss_pred eEEEEE---CCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCE
Q 046828 388 ISALCF---DRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQW 463 (627)
Q Consensus 388 Is~laF---spdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~ 463 (627)
|++|+| +-|| ..|+.||+|.. ||||+=. ..++++.. ...|.+++-... ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~---------------------e~~~Ei~e---~~~v~~L~~~~~-~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGD---------------------EIVAEITE---TDKVTSLCSLGG-GR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeCC---------------------cEEEEEec---ccceEEEEEcCC-CE
Confidence 455554 4444 46889999986 8999843 25666643 345888877777 55
Q ss_pred EEEEeCCCeEEEEEc
Q 046828 464 IAIVSSRGTCHIFVL 478 (627)
Q Consensus 464 Las~S~dgTvhIw~i 478 (627)
++.+...|||-||+-
T Consensus 56 F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 56 FAYALANGTVGVYDR 70 (111)
T ss_pred EEEEecCCEEEEEeC
Confidence 888999999998864
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=91.29 E-value=24 Score=39.90 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=38.2
Q ss_pred cEEEEEECCCCceEEEEecCCe-------E--EEEEecC-cEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRST-------V--YMVRCSP-RIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~-------V--~sV~~s~-~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-.|+++|+.+-+.+.... + ..+.+.. ..|.++ .++.|+.+|+.|++.+.....
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5677889999998877654322 1 1123323 445444 577899999999999877643
|
The alignment model contains an 8-bladed beta-propeller. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=91.28 E-value=3 Score=51.81 Aligned_cols=110 Identities=13% Similarity=0.031 Sum_probs=63.9
Q ss_pred CCCCeEEEEECCCCeEEEEeccC---------------CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAH---------------TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGS 426 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH---------------~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~ 426 (627)
..++.|++||..++... .+.+. -.....|+|+|+|..|..+......|++||+. . +.
T Consensus 702 ~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~-t------g~ 773 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK-T------GG 773 (1057)
T ss_pred CCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC-C------Cc
Confidence 35678999998776432 22211 12245699999999776666665569999975 1 11
Q ss_pred Cc--cccCCCCceeEEEEEe--ecC----CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 427 AS--QTYDWTSSHVHLYKLH--RGM----TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 427 ~~--~~~~~~~~~~~l~~l~--rG~----t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.. ..++.. ....++.+- .|. .-..-..|+|++||+.+++-+.+++|++|+...
T Consensus 774 ~~~~~gg~~~-~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 774 SRLLAGGDPT-FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEEEEecccc-cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence 00 000000 000011110 000 001146899999999988899999999999864
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.13 E-value=6.7 Score=46.09 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=36.7
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC-------cEEEEEeCCeEEEEeCC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-------RIVAVGLAAQIYCFDAL 226 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-------~~LaV~~~~~I~i~D~~ 226 (627)
+++|.|-++-+.+..+++.|+-++.+|++.| +..++|....+.++.-.
T Consensus 92 DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~ 146 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERN 146 (846)
T ss_pred CCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhh
Confidence 4779999999999999999999999999976 34444433337777543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=90.78 E-value=2.7 Score=48.68 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=68.8
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe---CCCCE-----------EEEEeCCCCCCCCCCCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTAS---IHGNN-----------INIFRIMPSSSKGRSGS 426 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS---~dGt~-----------I~Vwdi~p~~~~~~~g~ 426 (627)
....+++.+.|..+.+.+.++.--. ...-++|+|||+++.+.+ +.|.. +.+|++.-....-..|.
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 3567889999999998888877543 336679999999998886 43332 23343320000000110
Q ss_pred C-------ccccCCCC----ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCC
Q 046828 427 A-------SQTYDWTS----SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFG 482 (627)
Q Consensus 427 ~-------~~~~~~~~----~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~g 482 (627)
. ..-.|... ....+..+.-|. ....|++||||+++.+++. +.||.|+++....
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 0 00000000 001222222222 2578999999999988776 8899999998744
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.71 Score=49.51 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=45.1
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC----cEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP----RIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~----~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|=+||+++++.|..+....++.+|.++. .++++.. ++.+++||+.|++.++++..
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 668889999999999999988999999985 4445544 45799999999999999865
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.53 E-value=1 Score=52.55 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=65.7
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+.-.|.|.+.+..-. . .+...|... +.+|.++||+|.||+ |.|..+.... - .+.
T Consensus 55 GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~-----~------------~~~ 108 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDD-----E------------ITQ 108 (846)
T ss_pred ccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCc-----c------------cee
Confidence 456788999887643 2 344455443 789999999999998 5777765111 0 255
Q ss_pred EEEeecCCcCcEEEEEEccC-----CCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 441 YKLHRGMTSAVIQDICFSHY-----SQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpD-----g~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
+.+.| .|.+|+++|| ++.+++|+..| +-++.-+-++-..
T Consensus 109 ~df~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~ 152 (846)
T KOG2066|consen 109 YDFKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD 152 (846)
T ss_pred EecCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc
Confidence 66644 4899999998 78889999999 8888765554443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.9 Score=48.99 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=59.7
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc-ccCCCCceeEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ-TYDWTSSHVHLY 441 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~-~~~~~~~~~~l~ 441 (627)
..+.+.|+|+.+++....... ...+....|||+|+.||-.... .|.++++. . +...+ ..+... .+
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~--nly~~~~~-~------~~~~~lT~dg~~---~i- 86 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDN--NLYLRDLA-T------GQETQLTTDGEP---GI- 86 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETT--EEEEESST-T------SEEEESES--TT---TE-
T ss_pred cceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecC--ceEEEECC-C------CCeEEeccccce---eE-
Confidence 346799999999765433333 6789999999999999998754 57888763 1 10000 000000 00
Q ss_pred EEeecCC--------cCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCCCCC
Q 046828 442 KLHRGMT--------SAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTPFGG 483 (627)
Q Consensus 442 ~l~rG~t--------~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~~gg 483 (627)
.-|.. -..-..+-|||||++||....| ..|+.+.+..+..
T Consensus 87 --~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 87 --YNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp --EESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred --EcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCC
Confidence 00110 0012457899999999976554 4467666655543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=89.64 E-value=35 Score=37.83 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=38.5
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCCeEEEEeCC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAAQIYCFDAL 226 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~~I~i~D~~ 226 (627)
|..|+||+. .|+.+.++.+.+ .|..+.|+. ++|+|..++.+++||+.
T Consensus 60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 347999986 677889998764 899999986 66777778899999986
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.52 E-value=16 Score=44.98 Aligned_cols=97 Identities=13% Similarity=0.234 Sum_probs=58.2
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH---GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d---Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..|+|||.+ +..-..=..-..-=.+|+|-|+|.++|+--.+ ++ |.+|.- ++-. .|. +
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffEr--NGL~--hg~--------------f 281 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFER--NGLR--HGE--------------F 281 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEec--CCcc--ccc--------------c
Confidence 689999987 32111111112223579999999999986443 34 677763 3211 121 2
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEE---EeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAI---VSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las---~S~dgTvhIw~i~~~ 481 (627)
.++.-.+.-.|..|+|+.++..||+ ......|.+|-+.-|
T Consensus 282 ~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 282 VLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 2222222222899999999999999 444445889977654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.55 E-value=1 Score=52.77 Aligned_cols=98 Identities=15% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEECCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 360 DTDIAGMVVVKDIVSRSVISQ--FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~--~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
+....|.|.||- .+|++... .+-| +.+|||+|.--.||.+=+.|. +.||.....
T Consensus 36 S~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~-~~v~~~~~~------------------- 91 (1416)
T KOG3617|consen 36 SPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGV-SDVQKTNTT------------------- 91 (1416)
T ss_pred cCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccce-eEEEecCCc-------------------
Confidence 455678888873 33433221 1222 456999999999999999996 799986411
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
..+..-. .+++.|+-+.||+||..|.++..-|.+|+|.....|.
T Consensus 92 -e~htv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 92 -ETHTVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred -eeeeecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 2222222 2356799999999999999999999999999886543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=87.90 E-value=36 Score=40.60 Aligned_cols=87 Identities=14% Similarity=0.342 Sum_probs=54.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC-ceeEEEE----EeecCCcCcEEEEEEccC-
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS-SHVHLYK----LHRGMTSAVIQDICFSHY- 460 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~-~~~~l~~----l~rG~t~a~I~sIaFSpD- 460 (627)
.|..|.+||+|++||-++..| |.|-.+ |..- |..|.. .+... ...+.+. +++......|..+.|.|.
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~--v~V~~L-P~r~-g~~~~~---~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG--VVVLEL-PRRW-GKNGEF---EDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc--EEEEEe-cccc-Cccccc---cCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 488999999999999999988 345555 4310 001100 00000 0111111 122233456999999996
Q ss_pred --CCEEEEEeCCCeEEEEEcCC
Q 046828 461 --SQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 461 --g~~Las~S~dgTvhIw~i~~ 480 (627)
+..|++-++|+++++|++..
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCC
Confidence 58999999999999999963
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.2 Score=46.98 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=76.8
Q ss_pred CCCCeEEEEECCCCe-EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce-e
Q 046828 362 DIAGMVVVKDIVSRS-VISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH-V 438 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~-~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~-~ 438 (627)
-.+|.|.|+|-...- +...|+ -|.+||.++.+++.|....+....|- |.-|...+..+.. .+ .-+|.-.+ .
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~~~qfP-r~----~l~~~~K~eT 192 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEGPFQFP-RT----NLNFELKHET 192 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCCcccCc-cc----cccccccccc
Confidence 367889999976553 455555 69999999999999999999999885 8999875211100 00 01111110 1
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
-+|.+..- .....++.||||+..++.-+.|-+|++|.....
T Consensus 193 dLy~f~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 193 DLYGFPKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred hhhccccc--ccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 23332221 123889999999999999999999999998653
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.24 E-value=4.5 Score=47.04 Aligned_cols=96 Identities=10% Similarity=0.136 Sum_probs=56.5
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
...+.+++.... ....+.+. ..+.-.|+|||+.|++.+....+.++.+-.. .+. ..+..+
T Consensus 378 ~s~Lwv~~~gg~-~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~------~gq-----------l~~~~v 437 (591)
T PRK13616 378 ASSLWVGPLGGV-AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA------TGQ-----------LARTPV 437 (591)
T ss_pred ceEEEEEeCCCc-ceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC------Cce-----------EEEEec
Confidence 345666675332 22222332 3777899999999999986545555544210 111 111122
Q ss_pred eecCC----cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 444 HRGMT----SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 444 ~rG~t----~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.-|.. ...|.++.|||||++||... +|.|+|=.+.+
T Consensus 438 d~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 438 DASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred cCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 11111 12499999999999999987 57777755554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.82 E-value=1.8 Score=52.20 Aligned_cols=53 Identities=19% Similarity=0.474 Sum_probs=37.5
Q ss_pred CCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..|.|-..|.... .+...=..-..||++++|+.||++|+.|=.+|. |.|||+.
T Consensus 107 s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~ 160 (1206)
T KOG2079|consen 107 SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMH 160 (1206)
T ss_pred CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEcc
Confidence 4455655555432 221111122579999999999999999999998 7999986
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.81 E-value=32 Score=39.03 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=41.9
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
.++.+|.|++||-...+.-..|++...+|..|.-+.||+.|+..... + +-+-++
T Consensus 446 vgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-y-LlLi~t 499 (644)
T KOG2395|consen 446 VGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-Y-LLLIDT 499 (644)
T ss_pred EeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-E-EEEEEE
Confidence 35789999999986556667788999999999999999987654432 3 556665
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.18 E-value=91 Score=38.06 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=48.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCC-------------EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 386 SPISALCFDRSGTLLVTASIHGN-------------NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt-------------~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+...++|.+...++++.+..+. .++|+|-. + ...-+.+++.+-.+.-.|
T Consensus 715 ~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n-T----------------f~vl~~hef~~~E~~~Si 777 (1096)
T KOG1897|consen 715 ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN-T----------------FEVLSSHEFERNETALSI 777 (1096)
T ss_pred CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC-c----------------eeEEeeccccccceeeee
Confidence 34577888886666666655432 24444422 0 112345556554433347
Q ss_pred EEEEEccC-CCEEEEEeC----------CCeEEEEEcCC
Q 046828 453 QDICFSHY-SQWIAIVSS----------RGTCHIFVLTP 480 (627)
Q Consensus 453 ~sIaFSpD-g~~Las~S~----------dgTvhIw~i~~ 480 (627)
.++.|..| +.++++|+. .|.++||....
T Consensus 778 ~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 778 ISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred eeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 77779999 889999875 67888888877
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.12 E-value=56 Score=36.71 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 046828 397 GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 397 G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw 476 (627)
|.+|+..+.+ .|.+||+. ++ ..+.+. +-..|..|.||+|++++|..+.+ ++.|+
T Consensus 117 G~LL~~~~~~--~i~~yDw~-------~~------------~~i~~i----~v~~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 117 GNLLGVKSSD--FICFYDWE-------TG------------KLIRRI----DVSAVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp SSSEEEEETT--EEEEE-TT-------T--------------EEEEE----SS-E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred CcEEEEECCC--CEEEEEhh-------Hc------------ceeeEE----ecCCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 9999988876 38999986 23 133333 22348999999999999999865 67776
Q ss_pred EcC
Q 046828 477 VLT 479 (627)
Q Consensus 477 ~i~ 479 (627)
+.+
T Consensus 171 ~~~ 173 (443)
T PF04053_consen 171 KYN 173 (443)
T ss_dssp EE-
T ss_pred Eec
Confidence 654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.93 E-value=93 Score=37.97 Aligned_cols=98 Identities=11% Similarity=0.153 Sum_probs=71.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
-.-.|++|+..+.+.+..-..|..++.+|...-.|..+|.|+..+. |.+-.-... .| .+++
T Consensus 846 In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-----eg-------------~f~e 906 (1096)
T KOG1897|consen 846 INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-----EG-------------NFEE 906 (1096)
T ss_pred cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-----CC-------------ceEE
Confidence 3457999999998877777788899999999999999999999876 565544311 12 3666
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+.|-..+-++..+.+=.|..++ .+...|.+.+-..+.
T Consensus 907 vArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKDS 943 (1096)
T ss_pred eehhhCccceeeEEEecCceEE-eecccccEEEEEecC
Confidence 6665555567778776665554 566777777766653
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.66 E-value=12 Score=39.37 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=81.3
Q ss_pred CCCceEEEEecCCeEEEEEecC---cEEEEEe-CC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCc
Q 046828 188 RSHNYVHVLRFRSTVYMVRCSP---RIVAVGL-AA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPR 262 (627)
Q Consensus 188 ~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~-~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r 262 (627)
..|+.+..+..+..-..|.++| +-|+.+- -+ ..++||..+.+.+.++.....-. .++.+.++-+++
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH---------fyGHGvfs~dG~ 126 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH---------FYGHGVFSPDGR 126 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce---------eecccccCCCCc
Confidence 4688888888888888899986 5556553 23 47899999998887775422210 134555666666
Q ss_pred eEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCC
Q 046828 263 WLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSP 342 (627)
Q Consensus 263 ~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~ 342 (627)
||--..++
T Consensus 127 ~LYATEnd------------------------------------------------------------------------ 134 (366)
T COG3490 127 LLYATEND------------------------------------------------------------------------ 134 (366)
T ss_pred EEEeecCC------------------------------------------------------------------------
Confidence 66333221
Q ss_pred ccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEe
Q 046828 343 VSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTAS 404 (627)
Q Consensus 343 ~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS 404 (627)
....-|+|-|||...+ +.+..|..|.----.+.+.+||++|+.+.
T Consensus 135 -----------------fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 135 -----------------FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred -----------------CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 0124588999998865 45777888866666788999999999875
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=83.33 E-value=31 Score=31.22 Aligned_cols=86 Identities=10% Similarity=0.147 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+++|..|+||+-. +.+..+.-+ +.|..|+-... ..++.|-.+|| |-||+-. .+
T Consensus 20 vGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~---------------------~R 73 (111)
T PF14783_consen 20 VGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDRS---------------------QR 73 (111)
T ss_pred EecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeCc---------------------ce
Confidence 35789999999855 567777654 45666665555 56999999999 7999853 26
Q ss_pred EEEEeecCCcCcEEEEEEcc---CCC-EEEEEeCCCeEE
Q 046828 440 LYKLHRGMTSAVIQDICFSH---YSQ-WIAIVSSRGTCH 474 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSp---Dg~-~Las~S~dgTvh 474 (627)
+++.... ..+.++++-. ||. -|+++=++|.|-
T Consensus 74 lWRiKSK---~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSK---NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccC---CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6766432 2356665544 332 566776677654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=82.94 E-value=21 Score=42.81 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=43.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
-++.+|.||+||-...+.-..|++-..||..|..+.||++|+..... .+-++++.
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t--yLlLi~t~ 647 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT--YLLLIDTL 647 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc--eEEEEEEe
Confidence 35789999999976666667788888999999999999987655543 36777764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.82 E-value=1.8 Score=52.06 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=55.0
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC-cCcEEEEEEccCCCEEEEEeCCCeE
Q 046828 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT-SAVIQDICFSHYSQWIAIVSSRGTC 473 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t-~a~I~sIaFSpDg~~Las~S~dgTv 473 (627)
--+..+|.++..|+ +-.+|.. | -+..+.+|.. ...|.+++|+.||+.++.|=.+|-|
T Consensus 97 ~~~~~ivi~Ts~gh-vl~~d~~--------~-------------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V 154 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGH-VLLSDMT--------G-------------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHV 154 (1206)
T ss_pred eeeeeEEEEcCchh-hhhhhhh--------c-------------ccchhhcCCccCCcceeeEecCCCceeccccCCCcE
Confidence 34678999999998 5677763 2 1222333322 2459999999999999999999999
Q ss_pred EEEEcCCCCCeeecccccc
Q 046828 474 HIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 474 hIw~i~~~gg~~~~~~h~s 492 (627)
.+||+........+..|..
T Consensus 155 ~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 155 TVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred EEEEccCCcceeeeeecCC
Confidence 9999988665555555543
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=82.67 E-value=7.4 Score=36.40 Aligned_cols=54 Identities=9% Similarity=0.160 Sum_probs=41.7
Q ss_pred cEEEEEECC--------CCceEEEEecCCeEEEEEec-------CcEEEEEeCCeEEEEeCCCCceeEE
Q 046828 180 TAVRFYSLR--------SHNYVHVLRFRSTVYMVRCS-------PRIVAVGLAAQIYCFDALTLESKFS 233 (627)
Q Consensus 180 ~tV~lwdl~--------t~~~V~tL~f~s~V~sV~~s-------~~~LaV~~~~~I~i~D~~t~e~~~t 233 (627)
++|.|++.. ....+..|.+...|.+++.- ++.|++|....+-+||+.....+|-
T Consensus 20 gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 20 GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFY 88 (136)
T ss_pred CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhh
Confidence 456666654 45678999999999888764 3799999999999999987665543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=82.46 E-value=1.4 Score=45.35 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=61.0
Q ss_pred CeEEEEECCCCeEEE-EeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 365 GMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 365 G~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
+..++|++...+.+. ..++ ...|.+++-+|-- .++++|+++|. +-+||.. +.+. + .-++
T Consensus 159 d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~r-------n~~~------p---~S~l- 219 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGI-VGLWDAR-------NVAM------P---VSLL- 219 (319)
T ss_pred cceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCe-EEEEEcc-------cccc------h---HHHH-
Confidence 445567665443211 1112 2349999999954 56677777875 8999986 1210 0 1112
Q ss_pred EeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~ 480 (627)
.-| .+.|+.|-|.| ++..|.+++.||.+--|+-+.
T Consensus 220 --~ah-k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 220 --KAH-KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --HHh-hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 222 34699999999 889999999999998888763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.87 E-value=2.9 Score=49.19 Aligned_cols=55 Identities=22% Similarity=0.345 Sum_probs=48.5
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+-+-|.+.+|...+.+.-..-..|+.+|.-|.|||+|+.|.|+..-|. +.+|..+
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence 446788999999988877777799999999999999999999999996 7999875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.32 E-value=23 Score=38.66 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC--CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH--GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d--Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
....|.+.|+.+.+.+..+.--. --..++|+|+|+.+..+... ...+.++|.. ++ ..+
T Consensus 94 ~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-------t~------------~~~ 153 (381)
T COG3391 94 DSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-------TN------------KVT 153 (381)
T ss_pred CCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCC-------CC------------eEE
Confidence 36789999988877766665322 44678999999888887773 2336666643 12 134
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTP 480 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~ 480 (627)
.....|..+ ..++++|||+.+.+.. .++++.+++.+.
T Consensus 154 ~~~~vG~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 154 ATIPVGNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred EEEecCCCc---ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 445566644 8899999999777665 789999999554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=81.08 E-value=10 Score=41.94 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=55.8
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe-e-----cCCc
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH-R-----GMTS 449 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~-r-----G~t~ 449 (627)
.++..+.....+|++++.|.=| ++|.|.++|+ +-|.|++ |. .-+|.-. + ....
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~R--------GP-----------avI~~~~i~~~~~~~~~~ 135 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLR--------GP-----------AVIYNENIRESFLSKSSS 135 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETT--------TT-----------EEEEEEEGGG--T-SS--
T ss_pred CchhheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECC--------CC-----------eEEeeccccccccccccc
Confidence 3556666678999999998666 9999999998 6899984 32 1333311 1 1122
Q ss_pred CcEEEEEEcc-----CC---CEEEEEeCCCeEEEEEcCCC
Q 046828 450 AVIQDICFSH-----YS---QWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 450 a~I~sIaFSp-----Dg---~~Las~S~dgTvhIw~i~~~ 481 (627)
..|.+|.|+- |+ -.|.+|++.|++.+|.|-+.
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 3488899983 43 47889999999999999863
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.95 E-value=0.86 Score=53.63 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=78.6
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC-EEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN-NINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
.-+...|.|++++..+|.......+|.++|+-|.=+.||.++.|.|.-.. ..-+|+.. + .+.
T Consensus 1117 ~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~-s-----~~~----------- 1179 (1516)
T KOG1832|consen 1117 AVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS-S-----TGG----------- 1179 (1516)
T ss_pred EeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc-c-----ccC-----------
Confidence 34677899999999999999999999999999999999999888776554 45789875 2 111
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+.+ ++ =.++.||...+.-++|+....+||||+.+..
T Consensus 1180 -~~Hsf-~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1180 -PRHSF-DE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred -ccccc-cc-----cceeehhhhHHHHHhcccccceEEEecccCc
Confidence 22222 22 2568899988888999999999999998654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=80.89 E-value=95 Score=34.24 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=27.4
Q ss_pred CCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEeCC
Q 046828 178 SPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGLAA 218 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~~~ 218 (627)
.++.|.-.|++||+.-..+.-..++--+.+|| .+|+-+-.+
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEG 209 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEG 209 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccC
Confidence 35888889999999766666677888899987 677776543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 2e-18
Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 30/197 (15%)
Query: 321 DMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQ 380
D+ + + + + + + K + S ++ V+
Sbjct: 136 DIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATT-----QDQGVQQKAILGKGVL 190
Query: 381 FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440
+AHT+PI + +R ++ T S G I +F+ T V +
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK-------------------TEDGVLV 231
Query: 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLS 500
+ RG+ A + D+ +S +A+VS + T H+F + +++ +
Sbjct: 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI----FNDQDNKRHALKGWINMK 287
Query: 501 PVLSVPWWSSPSFMINQ 517
S WS +F ++
Sbjct: 288 YFQSE--WSLCNFKLSV 302
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 9e-07
Identities = 77/498 (15%), Positives = 133/498 (26%), Gaps = 186/498 (37%)
Query: 82 HVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141
V + + F DV+D ++S+ + + + M D G L
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPK--SILSKEE--IDHIIMSK-----DAVSGTL----RLFW 69
Query: 142 VACDEAKNSGLVHVHVGRDGLVRDGYD--------EP-QPGNVAMSPTAVRFYSLRS--H 190
K +V V ++R Y E QP S + R +
Sbjct: 70 TLLS--KQEEMVQKFVE--EVLRINYKFLMSPIKTEQRQP-----SMMTRMYIEQRDRLY 120
Query: 191 NYV------HVLRF------RSTVYMVRCSPRIVAVG--------LAAQIYCFDALTLES 230
N +V R R + +R + ++ G +A + C ++
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLS-YKVQC 178
Query: 231 KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYA---SNNPLLPNTGRLSPQSLTPP 287
K + + F WL S +L +L Q + P
Sbjct: 179 KMD---FKI--F--------------------WLNLKNCNSPETVLEMLQKLLYQ-IDPN 212
Query: 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD--FIPDGSSSPVSS 345
S S SN + + S + L+ S+ Y++ + V +
Sbjct: 213 WTSRSDHSSN----IKLRIHSIQAELRRLL---------KSKPYENCLLVLLN----VQN 255
Query: 346 NSSWKA----------GRNASHSSDTDIAGMVVVKDIV------------SRSVISQF-- 381
+W A R TD I +S++ ++
Sbjct: 256 AKAWNAFNLSCKILLTTRFK---QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 382 -RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD-WTSSHVH 439
R P L + + I +I R + T+D W HV+
Sbjct: 313 CRPQDLPREVL----TTNPRRLSII-AESI---RDGLA-----------TWDNW--KHVN 351
Query: 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET-----VLQIQNSHV 494
KL I + + VL P E L +
Sbjct: 352 CDKLTT------IIESSLN------------------VLEP--AEYRKMFDRLSVFPPSA 385
Query: 495 DRPTLSPVLSVPWWSSPS 512
PT +LS+ W+
Sbjct: 386 HIPT--ILLSLIWFDVIK 401
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 74/479 (15%), Positives = 142/479 (29%), Gaps = 111/479 (23%)
Query: 43 VRSAGASVAASISGDSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN 102
+ S + + + + L S + PS + + + V N
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 103 VSELVSRRDDPVTFLQ--MQPL-PAKS---DGQEGFRNSHPLLLVVACD----EAKNSGL 152
VS R P L+ + L PAK+ DG G + + + C + K
Sbjct: 131 VS-----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFK 183
Query: 153 VH-VHVGRDGLVRDGYDEPQ------PGNVAMSPTAVRFYSLRSHNYVHVLR--FRSTVY 203
+ +++ + Q N LR H+ LR +S Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 204 MVRC--------SPRIVAVGLAAQIYCFDALTLESKFSVLT--YPVPHF-GGQGTSGVNI 252
C + + +A L K + T V F T+ +++
Sbjct: 244 -ENCLLVLLNVQNAKAW-----------NAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 253 GYGPMAVGP--------RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMA-- 302
+ M + P ++L PQ L P +T+P +++A
Sbjct: 292 DHHSMTLTPDEVKSLLLKYL-------------DCRPQDL--PREVLTTNPRRLSIIAES 336
Query: 303 ---------RYAVESSKQLAAGLINLGDMGYKTLS-----RYYQDF--IPDGSSSPVSSN 346
+ + +L + + L + + P + P
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTII----ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 347 SS-WKAGRNASHSSDTDIAGMVVVKDIVSRSVI-SQFRAHTSPISALCFDRSGTLLVTAS 404
S W +D+ MVVV + S++ Q + T I ++ + L +
Sbjct: 393 SLIWFD------VIKSDV--MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 405 IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV--HLYKLHRG----MTSAVIQDICF 457
+H + ++ + I P + + SH+ HL + + V D F
Sbjct: 445 LHRSIVDHYNI-PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 20/172 (11%), Positives = 51/172 (29%), Gaps = 32/172 (18%)
Query: 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393
F + + A+ S+D + + D+ + + HT+ ++ F
Sbjct: 707 FTNKSNHLLL-----------ATGSND----FFLKLWDLNQKECRNTMFGHTNSVNHCRF 751
Query: 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453
LL + S + ++ + RS + ++ + + + V +
Sbjct: 752 SPDDELLASCS-ADGTLRLWDV-------RSANERKSINVKRFFLSSEDPPEDVEVIV-K 802
Query: 454 DICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSV 505
+S I + + + T + +I H S +
Sbjct: 803 CCSWSADGDKIIVAAKNKVLLFDIHT---SGLLAEIHTGH-----HSTIQYC 846
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.98 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.95 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.95 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.94 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.94 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.94 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.94 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.93 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.93 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.93 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.93 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.93 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.92 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.92 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.92 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.92 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.92 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.91 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.91 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.91 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.91 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.91 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.91 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.9 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.9 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.9 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.9 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.9 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.9 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.89 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.89 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.89 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.89 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.89 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.89 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.89 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.89 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.89 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.89 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.89 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.89 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.89 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.89 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.89 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.88 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.88 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.88 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.88 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.88 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.88 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.88 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.88 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.88 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.87 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.87 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.87 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.87 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.87 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.87 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.86 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.86 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.86 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.86 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.86 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.86 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.86 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.86 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.86 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.86 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.85 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.85 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.85 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.85 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.85 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.85 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.85 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.85 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.85 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.85 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.85 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.84 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.84 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.84 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.83 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.83 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.83 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.83 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.83 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.83 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.83 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.82 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.82 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.82 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.82 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.82 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.82 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.82 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.81 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.8 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.8 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.8 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.79 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.79 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.78 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.78 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.78 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.77 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.77 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.76 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.76 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.76 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.76 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.75 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.73 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.73 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.72 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.71 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.71 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.67 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.64 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.64 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.6 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.59 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.57 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.54 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.53 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.53 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.53 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.53 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.51 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.5 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.5 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.48 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.46 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.46 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.46 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.44 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.4 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.37 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.37 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.36 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.32 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.31 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.31 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.31 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.3 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.3 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.27 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.25 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.24 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.23 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.18 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.17 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.15 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.07 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.06 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.02 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.02 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.99 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.95 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.94 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.91 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.87 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.83 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.83 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.75 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.71 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.63 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.6 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.58 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.57 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.56 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.54 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.53 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.45 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.43 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.41 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.39 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.37 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.36 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.29 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.28 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.26 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.26 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.25 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.23 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.21 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.14 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.1 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.05 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.05 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.02 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.0 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.0 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.0 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.93 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.83 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.82 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.76 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.75 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.72 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.7 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.63 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.63 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.56 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.56 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.46 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.43 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.41 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.4 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.4 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.39 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.39 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.37 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.33 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.22 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.2 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.19 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.18 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.17 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.08 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.07 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.0 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.94 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.94 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.92 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.91 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 96.86 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 96.83 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.82 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.59 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 96.54 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.52 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.51 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.47 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.25 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.32 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.12 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.11 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.01 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 94.92 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.81 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 94.61 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.5 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.37 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.05 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 93.65 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 93.52 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 92.95 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 92.7 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 92.13 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 92.05 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 91.99 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 91.69 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 91.53 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 91.37 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 91.36 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 90.82 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 89.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 89.64 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 89.08 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 88.96 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 87.74 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 87.51 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 87.21 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 86.52 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 85.5 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 85.12 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 84.39 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 83.19 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 81.45 |
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-29 Score=267.22 Aligned_cols=269 Identities=18% Similarity=0.222 Sum_probs=203.1
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..+++.|..+.|... .++|+.|.++|++|||+++.. ++...+.+.+..+.+.+.+ .+
T Consensus 16 ~~h~~~V~~v~fs~d-------g~~la~g~~~~~~iw~~~~~~---~~~~~~~~~~~~~~~~~~~-------------~~ 72 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQD-------QSCLILSTLKSFEIYNVHPVA---HIMSQEMRHLSKVRMLHRT-------------NY 72 (355)
T ss_dssp ---CCCCCEEEECTT-------SSEEEEECSSEEEEEEETTEE---EEEEEECSCCCEEEECTTS-------------SE
T ss_pred ccCCCceEEEEECCC-------CCEEEEEcCCEEEEEecCCcc---eeeeeecCCeEEEEEcCCC-------------CE
Confidence 456788999999742 457888999999999998643 4444444557777777543 56
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEeCC
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAA 218 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~~~ 218 (627)
+++++ + .+++|+|||+++++.+.+++++++|.+|+++++.++++.++
T Consensus 73 ~~~~~------~---------------------------~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 119 (355)
T 3vu4_A 73 VAFVT------G---------------------------VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD 119 (355)
T ss_dssp EEEEC------S---------------------------STTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEE------C---------------------------CccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcC
Confidence 66543 1 12689999999999999999999999999999999999999
Q ss_pred eEEEEeCCCC-ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCC
Q 046828 219 QIYCFDALTL-ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSN 297 (627)
Q Consensus 219 ~I~i~D~~t~-e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~ 297 (627)
+|++||+.++ +.++++.+ + .+.+++.+..||+++
T Consensus 120 ~i~i~d~~~~~~~~~~~~~---~-------------~~~~~~s~~~la~~s----------------------------- 154 (355)
T 3vu4_A 120 VISVFKFGNPWKRITDDIR---F-------------GGVCEFSNGLLVYSN----------------------------- 154 (355)
T ss_dssp EEEEEESSTTCCBSSCCEE---E-------------EEEEEEETTEEEEEE-----------------------------
T ss_pred EEEEEECCCCceeeEEecc---C-------------CceEEEEccEEEEeC-----------------------------
Confidence 9999999998 66655544 2 223455445555541
Q ss_pred CcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe-
Q 046828 298 GNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS- 376 (627)
Q Consensus 298 gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~- 376 (627)
+..+|.|+|||+.+++
T Consensus 155 ---------------------------------------------------------------g~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 155 ---------------------------------------------------------------EFNLGQIHITKLQSSGS 171 (355)
T ss_dssp ---------------------------------------------------------------SSCTTCEEEEECCC---
T ss_pred ---------------------------------------------------------------CCcCcEEEEEECCCCCc
Confidence 2357889999998765
Q ss_pred --------------E-EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 377 --------------V-ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 377 --------------~-l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
+ +..+.+|..+|.+|+|+|+|++|||++.||++|+|||+. ++ ..+.
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~-------~~------------~~~~ 232 (355)
T 3vu4_A 172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE-------DG------------VLVR 232 (355)
T ss_dssp ---------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT-------TC------------CEEE
T ss_pred cccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC-------CC------------cEEE
Confidence 2 788999999999999999999999999999867999986 33 2677
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCccccccCCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFS 521 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~~~~ 521 (627)
.+++|.+...|.+++|+||+++||+++.|++|+||++....... . + .+... .+|.|+.+.|++++++++
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~---~---~----~~~~~-~~~~~~~~~~~~~~~~~~ 301 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK---R---H----ALKGW-INMKYFQSEWSLCNFKLS 301 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC---S---E----ETTTT-EECCCCCCSSCSEEEECC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc---c---c----cccce-eeccccccccceeEEEec
Confidence 78767344679999999999999999999999999997642211 0 0 01111 367899999999988873
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-26 Score=240.53 Aligned_cols=262 Identities=16% Similarity=0.219 Sum_probs=195.8
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
...|.+.|..+.|.... ......+++.+.|+.++|||+..... ....+..|.+.|.++.+.+..
T Consensus 28 ~~~H~~~V~~v~~~~~~--~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~------------- 92 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNK--KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL------------- 92 (321)
T ss_dssp TTSSSSCEEEEEEC---------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-------------
T ss_pred cccCCCcEEEEEEecCC--CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-------------
Confidence 35678889889996421 11246788899999999999987441 122355688888888876542
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVA 213 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~La 213 (627)
++++... .+++|++||+++++.+.++.. ...|+.++|++ ++|+
T Consensus 93 ~~l~s~s----------------------------------~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 138 (321)
T 3ow8_A 93 PIAASSS----------------------------------LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA 138 (321)
T ss_dssp SEEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEE
T ss_pred CEEEEEe----------------------------------CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEE
Confidence 5654322 247899999999999999985 45899999997 6888
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++. +++|++||+.+++..+++..+... +.. +++.++...
T Consensus 139 ~g~~dg~v~i~~~~~~~~~~~~~~~~~~-------------v~~-------~~~spdg~~-------------------- 178 (321)
T 3ow8_A 139 TGTHVGKVNIFGVESGKKEYSLDTRGKF-------------ILS-------IAYSPDGKY-------------------- 178 (321)
T ss_dssp EECTTSEEEEEETTTCSEEEEEECSSSC-------------EEE-------EEECTTSSE--------------------
T ss_pred EEcCCCcEEEEEcCCCceeEEecCCCce-------------EEE-------EEECCCCCE--------------------
Confidence 875 568999999999988888765432 222 333332100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+ +.+..||.|+|||+
T Consensus 179 -------------------l----------------------------------------------asg~~dg~i~iwd~ 193 (321)
T 3ow8_A 179 -------------------L----------------------------------------------ASGAIDGIINIFDI 193 (321)
T ss_dssp -------------------E----------------------------------------------EEEETTSCEEEEET
T ss_pred -------------------E----------------------------------------------EEEcCCCeEEEEEC
Confidence 0 02346899999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+++.+..+.+|..+|.+|+|+|+|++|++++.||+ |+|||+. .+ ..+..+ .|++. .|
T Consensus 194 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~-------~~------------~~~~~~-~~h~~-~v 251 (321)
T 3ow8_A 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQ-------HA------------NLAGTL-SGHAS-WV 251 (321)
T ss_dssp TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETT-------TC------------CEEEEE-CCCSS-CE
T ss_pred CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECC-------Cc------------ceeEEE-cCCCC-ce
Confidence 999999999999999999999999999999999998 8999986 22 134444 66653 59
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccccc
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVD 495 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~ 495 (627)
.+++|+||+++|++++.|++|+||++........+..|...+.
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~ 294 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEE
Confidence 9999999999999999999999999987665566667765443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=237.99 Aligned_cols=240 Identities=14% Similarity=0.177 Sum_probs=176.9
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceE---EeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSE---LVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~e---lls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.|..+.|.. + +++++.+.++.++|||++..+.... .+..|++.|.++.+.|.- .+
T Consensus 82 ~~~v~~~~~s~----d---~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-------------~~ 141 (344)
T 4gqb_B 82 EAGVADLTWVG----E---RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-------------TQ 141 (344)
T ss_dssp SSCEEEEEEET----T---TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-------------SE
T ss_pred CCCEEEEEEeC----C---CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-------------CE
Confidence 34577788852 2 5688888888999999998664332 234688999999987642 55
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~LaV 214 (627)
|+... .+++|++||++++++++++. +...|.+++|++ .+|++
T Consensus 142 l~sgs----------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 187 (344)
T 4gqb_B 142 AVSGS----------------------------------KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLS 187 (344)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEE
T ss_pred EEEEe----------------------------------CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceee
Confidence 55422 13679999999999999998 456999999986 46777
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+. +++|+|||+.+++...++..+... ... .-+++.+.+.
T Consensus 188 ~s~D~~v~iwd~~~~~~~~~~~~~~~~-------------~~~-----~~~~~~p~~~---------------------- 227 (344)
T 4gqb_B 188 CSEDNRILLWDTRCPKPASQIGCSAPG-------------YLP-----TSLAWHPQQS---------------------- 227 (344)
T ss_dssp EETTSCEEEEETTSSSCEEECC----C-------------CCE-----EEEEECSSCT----------------------
T ss_pred eccccccccccccccceeeeeecceee-------------ccc-----eeeeecCCCC----------------------
Confidence 65 568999999999887766432110 001 1234433210
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
.+ + +.+..||.|+|||+.
T Consensus 228 -----~~-----------------------------------------------------l----~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 228 -----EV-----------------------------------------------------F----VFGDENGTVSLVDTK 245 (344)
T ss_dssp -----TE-----------------------------------------------------E----EEEETTSEEEEEESC
T ss_pred -----cc-----------------------------------------------------e----EEeccCCcEEEEECC
Confidence 00 0 123578999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 374 SRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 374 s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
+++++..+.+|..+|.+|+|+|+| ++|||+|.||+ |+|||+. .+ .+.++ +||+. .|
T Consensus 246 ~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~-------~~-------------~~~~~-~~H~~-~V 302 (344)
T 4gqb_B 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSS-------LS-------------ELFRS-QAHRD-FV 302 (344)
T ss_dssp C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTT-------CC-------------EEEEE-CCCSS-CE
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECC-------CC-------------cEEEE-cCCCC-CE
Confidence 999999999999999999999998 58999999998 8999985 23 45555 67764 59
Q ss_pred EEEEEccCCC-EEEEEeCCCeEEEEEcCC
Q 046828 453 QDICFSHYSQ-WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 453 ~sIaFSpDg~-~Las~S~dgTvhIw~i~~ 480 (627)
.+|+||||++ .|++++.||+|++|++..
T Consensus 303 ~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999986 567899999999999964
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-25 Score=236.34 Aligned_cols=255 Identities=13% Similarity=0.177 Sum_probs=197.1
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|++.|..+.|.. ..+.+++.+.|+.++|||++... ....+..|.+.|..+.+.|.. .+|
T Consensus 106 gh~~~V~~~~~~p------~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~h~~~V~~v~~~~~~-------------~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHP------VFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSG-------------KLL 165 (410)
T ss_dssp CCSSCEEEEEECS------SSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTS-------------SEE
T ss_pred ccCCcEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCCcEEEEEEcCCC-------------CEE
Confidence 3667888888863 23677888888999999999855 456677789999999987542 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~ 216 (627)
+..+ .+++|+|||+++++.++++. +...|.+++|++ +.|+++.
T Consensus 166 ~sgs----------------------------------~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s 211 (410)
T 1vyh_C 166 ASCS----------------------------------ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211 (410)
T ss_dssp EEEE----------------------------------TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEe----------------------------------CCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 5432 13679999999999999987 455999999987 6777765
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++++.++.+|... +.. +++.++...
T Consensus 212 ~D~~i~~wd~~~~~~~~~~~~h~~~-------------v~~-------~~~~~~g~~----------------------- 248 (410)
T 1vyh_C 212 RDKTIKMWEVQTGYCVKTFTGHREW-------------VRM-------VRPNQDGTL----------------------- 248 (410)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSC-------------EEE-------EEECTTSSE-----------------------
T ss_pred CCCeEEEEECCCCcEEEEEeCCCcc-------------EEE-------EEECCCCCE-----------------------
Confidence 568999999999999888877543 222 233321100
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
+ ..++.||.|+|||+.++
T Consensus 249 ----------------------------------------------------------l----~s~s~D~~v~vwd~~~~ 266 (410)
T 1vyh_C 249 ----------------------------------------------------------I----ASCSNDQTVRVWVVATK 266 (410)
T ss_dssp ----------------------------------------------------------E----EEEETTSCEEEEETTTC
T ss_pred ----------------------------------------------------------E----EEEcCCCeEEEEECCCC
Confidence 0 12357899999999999
Q ss_pred eEEEEeccCCCCeEEEEECCC--------------------CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 376 SVISQFRAHTSPISALCFDRS--------------------GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspd--------------------G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
+.+..+..|..+|.+++|+|+ |.+|++++.||+ |+|||+. ++
T Consensus 267 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~-------~~---------- 328 (410)
T 1vyh_C 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVS-------TG---------- 328 (410)
T ss_dssp CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETT-------TT----------
T ss_pred ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECC-------CC----------
Confidence 999999999999999999997 779999999997 8999986 33
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccccc
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVD 495 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~ 495 (627)
..+..+ .||.. .|.+++|+|++++|++++.||+|+||++........+..|...+.
T Consensus 329 --~~~~~~-~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~ 384 (410)
T 1vyh_C 329 --MCLMTL-VGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384 (410)
T ss_dssp --EEEEEE-ECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred --ceEEEE-ECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE
Confidence 245555 57654 599999999999999999999999999987666666777765443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=226.39 Aligned_cols=257 Identities=13% Similarity=0.125 Sum_probs=190.5
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|.+.|..+.|.. ..+.+++.+.|+.++|||+.+... ...+..|.+.|..+.+.|.. .+|
T Consensus 53 gH~~~v~~~~~s~------d~~~l~s~s~Dg~v~iWd~~~~~~-~~~~~~~~~~v~~~~~s~~~-------------~~l 112 (340)
T 1got_B 53 GHLAKIYAMHWGT------DSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSG-------------NYV 112 (340)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTTEEEEEETTTCCE-EEEEECSSSCEEEEEECTTS-------------SEE
T ss_pred CCCCceEEEEECC------CCCEEEEEeCCCcEEEEECCCCCc-ceEeecCCccEEEEEECCCC-------------CEE
Confidence 4678888899963 236788888899999999998653 44556688888888887642 555
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc----eEEEEe-cCCeEEEEEecC-cEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN----YVHVLR-FRSTVYMVRCSP-RIVA 213 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~----~V~tL~-f~s~V~sV~~s~-~~La 213 (627)
+..+ .+++|++||+++++ ...++. +...|.++.+++ ..|+
T Consensus 113 ~s~~----------------------------------~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 158 (340)
T 1got_B 113 ACGG----------------------------------LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158 (340)
T ss_dssp EEEE----------------------------------TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEE
T ss_pred EEEe----------------------------------CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEE
Confidence 5422 13779999998864 455565 456899999975 3455
Q ss_pred EE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++ .++.|++||+.+++.+.++.+|..+ +..+ ++.++...
T Consensus 159 s~s~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~-------~~~~~~~~-------------------- 198 (340)
T 1got_B 159 TSSGDTTCALWDIETGQQTTTFTGHTGD-------------VMSL-------SLAPDTRL-------------------- 198 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEE-------EECTTSSE--------------------
T ss_pred EEECCCcEEEEECCCCcEEEEEcCCCCc-------------eEEE-------EECCCCCE--------------------
Confidence 44 5678999999999988888776543 2223 33332100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+ ..++.||.|+|||+
T Consensus 199 -------------------l----------------------------------------------~sg~~d~~v~~wd~ 213 (340)
T 1got_B 199 -------------------F----------------------------------------------VSGACDASAKLWDV 213 (340)
T ss_dssp -------------------E----------------------------------------------EEEETTSCEEEEET
T ss_pred -------------------E----------------------------------------------EEEeCCCcEEEEEC
Confidence 0 02357899999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+++.+..|.+|..+|.+++|+|+|.+|++++.||+ |+|||+. .+ ..+..+........|
T Consensus 214 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~-------~~------------~~~~~~~~~~~~~~v 273 (340)
T 1got_B 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLR-------AD------------QELMTYSHDNIICGI 273 (340)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TT------------EEEEEECCTTCCSCE
T ss_pred CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECC-------CC------------cEEEEEccCCcccce
Confidence 999999999999999999999999999999999998 8999986 22 133333211122359
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccccc
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVD 495 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~ 495 (627)
.+++|+||+++|++++.||+|+||++........+..|...+.
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 316 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEE
Confidence 9999999999999999999999999987665566777765443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-24 Score=222.29 Aligned_cols=240 Identities=14% Similarity=0.177 Sum_probs=182.0
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..+...|..+.|.. ....++..+.|+.++|||+++... ...+..+...+..+.+.|.. .+
T Consensus 77 ~gh~~~v~~~~~~~------~~~~l~s~s~D~~i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg-------------~~ 136 (321)
T 3ow8_A 77 EGHQLGVVSVDISH------TLPIAASSSLDAHIRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDS-------------QY 136 (321)
T ss_dssp CCCSSCEEEEEECS------SSSEEEEEETTSEEEEEETTTTEE-EEEEECCTTCCCCEEECTTS-------------SE
T ss_pred ccCCCCEEEEEECC------CCCEEEEEeCCCcEEEEECCCCCE-EEEEeCCCccEEEEEECCCC-------------CE
Confidence 34566777777753 236778888899999999998553 33344455556666665532 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVG 215 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~ 215 (627)
|+... .+++|++||+++++.+.++..+ ..|.++++++ ++|+++
T Consensus 137 l~~g~----------------------------------~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 137 LATGT----------------------------------HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEC----------------------------------TTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEEc----------------------------------CCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 54321 1377999999999999998854 5899999997 688887
Q ss_pred e-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 216 L-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 216 ~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
. ++.|++||+.+++.++++.+|..+ +..+ ++.++...
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~-------------v~~l-------~~spd~~~---------------------- 220 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMP-------------IRSL-------TFSPDSQL---------------------- 220 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSC-------------CCEE-------EECTTSCE----------------------
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCc-------------eeEE-------EEcCCCCE----------------------
Confidence 6 568999999999998888776543 2223 33332100
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+ ..++.||.|+|||+.+
T Consensus 221 -----------------l----------------------------------------------~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 221 -----------------L----------------------------------------------VTASDDGYIKIYDVQH 237 (321)
T ss_dssp -----------------E----------------------------------------------EEECTTSCEEEEETTT
T ss_pred -----------------E----------------------------------------------EEEcCCCeEEEEECCC
Confidence 0 0235789999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 375 RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
++.+..+.+|..+|.+++|+|+|++|++++.||+ |+|||+. ++ ..+..+ .++. ..|.+
T Consensus 238 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~-------~~------------~~~~~~-~~h~-~~v~~ 295 (321)
T 3ow8_A 238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVG-------TR------------TCVHTF-FDHQ-DQVWG 295 (321)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TT------------EEEEEE-CCCS-SCEEE
T ss_pred cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCC-------CC------------EEEEEE-cCCC-CcEEE
Confidence 9999999999999999999999999999999998 8999986 23 245555 5654 45999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
++|+||+++|++++.||+|+||+..
T Consensus 296 v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 296 VKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-24 Score=219.91 Aligned_cols=251 Identities=14% Similarity=0.110 Sum_probs=186.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ..+.+++.++++.++|||+++... ...+..|.++|+.+.+.|.. .+|
T Consensus 11 ~h~~~V~~~~fsp------~~~~l~s~~~dg~v~lWd~~~~~~-~~~~~~~~~~v~~~~~~~~~-------------~~l 70 (304)
T 2ynn_A 11 NRSDRVKGIDFHP------TEPWVLTTLYSGRVELWNYETQVE-VRSIQVTETPVRAGKFIARK-------------NWI 70 (304)
T ss_dssp EECSCEEEEEECS------SSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEEEGGG-------------TEE
T ss_pred CCCCceEEEEECC------CCCEEEEEcCCCcEEEEECCCCce-eEEeeccCCcEEEEEEeCCC-------------CEE
Confidence 3567899999963 237788899999999999998553 44556688999999988753 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~ 216 (627)
+... .+++|++||+++++.+.+++ +...|.+|++++ ++|+++.
T Consensus 71 ~s~s----------------------------------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs 116 (304)
T 2ynn_A 71 IVGS----------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (304)
T ss_dssp EEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEC----------------------------------CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEEC
Confidence 5422 13789999999999999998 456999999997 6777776
Q ss_pred -CCeEEEEeCCCCce-eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLES-KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 217 -~~~I~i~D~~t~e~-~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
++.|++||+.+... ..++.+|..+ +.. +++.+.+..
T Consensus 117 ~D~~v~lWd~~~~~~~~~~~~~h~~~-------------v~~-------v~~~p~~~~---------------------- 154 (304)
T 2ynn_A 117 DDLTVKLWNWENNWALEQTFEGHEHF-------------VMC-------VAFNPKDPS---------------------- 154 (304)
T ss_dssp TTSCEEEEEGGGTTEEEEEECCCCSC-------------EEE-------EEECTTCTT----------------------
T ss_pred CCCeEEEEECCCCcchhhhhcccCCc-------------EEE-------EEECCCCCC----------------------
Confidence 55899999988744 4555555433 222 333331100
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
. + +.++.||.|+|||+.+
T Consensus 155 -----~-----------------------------------------------------l----~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 155 -----T-----------------------------------------------------F----ASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp -----E-----------------------------------------------------E----EEEETTSEEEEEETTC
T ss_pred -----E-----------------------------------------------------E----EEEeCCCeEEEEECCC
Confidence 0 0 1245789999999988
Q ss_pred CeEEEEec-cCCCCeEEEEECC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 375 RSVISQFR-AHTSPISALCFDR--SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 375 ~~~l~~~~-aH~~~Is~laFsp--dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
.+....+. .|...|..++|+| ++.+|++++.||+ |+|||+. ++ ..+..+ +||.. .
T Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~-------~~------------~~~~~~-~~h~~-~ 230 (304)
T 2ynn_A 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQ-------TK------------SCVATL-EGHMS-N 230 (304)
T ss_dssp SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETT-------TT------------EEEEEE-ECCSS-C
T ss_pred CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCC-------CC------------ccceee-CCCCC-C
Confidence 76655554 5678899999987 7889999999998 8999986 23 245555 67754 5
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
|.+++|+|++++|++++.||+|+||++........+..|
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 999999999999999999999999999876555554444
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-24 Score=227.04 Aligned_cols=227 Identities=15% Similarity=0.127 Sum_probs=165.6
Q ss_pred eccCcEEEEecCCCCCceEEeeec--------CCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 87 GYSNGFQVLDVEDATNVSELVSRR--------DDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 87 Gy~~G~qVWdv~~~~~~~ells~~--------dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+.++.+++|+++...+..+.+... +..++++++.|.. .+|+++++
T Consensus 101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-------------~~la~as~-------------- 153 (365)
T 4h5i_A 101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-------------TVAAIASS-------------- 153 (365)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-------------SCEEEEES--------------
T ss_pred cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-------------CEEEEEEC--------------
Confidence 346679999998866555544432 3446777776643 45665431
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEc
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~ 236 (627)
. .+++|+|||+++++++.++++...|++|+|++ ++|+++.++.+.+|+..+++.+.....
T Consensus 154 --------~----------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 154 --------K----------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTD 215 (365)
T ss_dssp --------C----------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECC
T ss_pred --------C----------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeec
Confidence 1 24889999999999999999999999999998 799999999999999999887654422
Q ss_pred CCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
.... ..+..++++| ++|+.++.
T Consensus 216 ~~~~-----------~~v~~v~fspdg~~l~~~s~--------------------------------------------- 239 (365)
T 4h5i_A 216 FDKN-----------WSLSKINFIADDTVLIAASL--------------------------------------------- 239 (365)
T ss_dssp CCTT-----------EEEEEEEEEETTEEEEEEEE---------------------------------------------
T ss_pred CCCC-----------CCEEEEEEcCCCCEEEEEec---------------------------------------------
Confidence 1110 0022233322 22322210
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE----EEEeccCCCCeEE
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV----ISQFRAHTSPISA 390 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~----l~~~~aH~~~Is~ 390 (627)
.......+++||+..... ...+..|..+|.+
T Consensus 240 ---------------------------------------------d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 240 ---------------------------------------------KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp ---------------------------------------------SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred ---------------------------------------------CCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 011223578888876643 4568899999999
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|+|+|||++||+|+.||+ |+|||+. ++ ..+.++.+||+. .|++|+|||||++||++|.|
T Consensus 275 ~~~Spdg~~lasgs~D~~-V~iwd~~-------~~------------~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNS-IALVKLK-------DL------------SMSKIFKQAHSF-AITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp EEECTTSCEEEEEETTSC-EEEEETT-------TT------------EEEEEETTSSSS-CEEEEEECTTSCEEEEEETT
T ss_pred EEECCCCCceEEEcCCCE-EEEEECC-------CC------------cEEEEecCcccC-CEEEEEECCCCCEEEEEeCC
Confidence 999999999999999998 8999986 33 366677788865 59999999999999999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
+||+||+|..
T Consensus 334 ~tvrvw~ip~ 343 (365)
T 4h5i_A 334 NTIHIIKLPL 343 (365)
T ss_dssp SEEEEEECCT
T ss_pred CeEEEEEcCC
Confidence 9999999964
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-24 Score=230.30 Aligned_cols=258 Identities=13% Similarity=0.158 Sum_probs=187.2
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ..+.+++.+.|+.++|||+.... ....+..|++.|..+.+.|.. .+|
T Consensus 148 ~h~~~V~~v~~~~------~~~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~V~~v~~~p~~-------------~~l 207 (410)
T 1vyh_C 148 GHTDSVQDISFDH------SGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVSIMPNG-------------DHI 207 (410)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTSCCCEEETTSSC-EEECCCCCSSCEEEEEECSSS-------------SEE
T ss_pred ccCCcEEEEEEcC------CCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCEEEEEEeCCC-------------CEE
Confidence 3567888888863 23678888889999999998754 445566788999999988753 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~~ 216 (627)
+..+ .+++|++||+++++++.++.. ...|.++.+++ ++|+++.
T Consensus 208 ~s~s----------------------------------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 208 VSAS----------------------------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp EEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEe----------------------------------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 4322 237899999999999999984 45899999987 6777775
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++...++.+|..+ +.. +++.+..........
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~~h~~~-------------v~~-------~~~~~~~~~~~~~~~----------------- 296 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELREHRHV-------------VEC-------ISWAPESSYSSISEA----------------- 296 (410)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSC-------------EEE-------EEECCSCGGGGGGGC-----------------
T ss_pred CCCeEEEEECCCCceeeEecCCCce-------------EEE-------EEEcCcccccchhhh-----------------
Confidence 568999999999998888776543 222 344432211000000
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
.+.. . ...+ ..|.+ ...++.||.|+|||+.++
T Consensus 297 -~~~~-----------~----~~~~-----------------------------~~g~~---l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 297 -TGSE-----------T----KKSG-----------------------------KPGPF---LLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp -CSCC---------------------------------------------------CCE---EEEEETTSEEEEEETTTT
T ss_pred -cccc-----------c----cccC-----------------------------CCCCE---EEEEeCCCeEEEEECCCC
Confidence 0000 0 0000 00111 124568999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
+++..+.+|..+|.+++|+|+|++|++++.||+ |+|||+. ++. .+..+ .+|. ..|.++
T Consensus 329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~-------~~~------------~~~~~-~~h~-~~v~~l 386 (410)
T 1vyh_C 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYK-------NKR------------CMKTL-NAHE-HFVTSL 386 (410)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCT-------TSC------------CCEEE-ECCS-SCEEEE
T ss_pred ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECC-------CCc------------eEEEE-cCCC-CcEEEE
Confidence 999999999999999999999999999999998 8999985 221 33334 5665 359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEc
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i 478 (627)
+|+|++++||+++.||+|+||++
T Consensus 387 ~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 387 DFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999986
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=229.93 Aligned_cols=245 Identities=13% Similarity=0.106 Sum_probs=171.7
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCce---EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVS---ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~---ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
+.+.|..+.|.. + .++|+.+.++.++|||+...+... .....|+++|.++.+.|.. .
T Consensus 93 ~~~~V~~~~~s~----d---~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-------------~ 152 (357)
T 4g56_B 93 TEAGVTDVAWVS----E---KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-------------T 152 (357)
T ss_dssp CSSCEEEEEEET----T---TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-------------S
T ss_pred CCCCEEEEEEcC----C---CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-------------C
Confidence 456688888863 2 568888889999999998765321 1223578999999987643 4
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC---cEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP---RIVA 213 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~---~~La 213 (627)
+|+... .+++|++||+++++.+.+++. ...|.+|+|++ .+++
T Consensus 153 ~l~sgs----------------------------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 153 QAVSGG----------------------------------KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp EEEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred EEEEEe----------------------------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 554322 136699999999999999984 56999999986 3566
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++. +++|++||+.+++....+...... ..+ ..+++.++..
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~-------------~~v-----~~v~~sp~~~--------------------- 239 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASD-------------TIP-----TSVTWHPEKD--------------------- 239 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCC-------------SCE-----EEEEECTTST---------------------
T ss_pred eeccCCceEEEECCCCceeeeeeecccc-------------ccc-----cchhhhhccc---------------------
Confidence 654 668999999998766544322111 001 2234433210
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
.+ + +.+..|+.|+|||+
T Consensus 240 ------~~-----------------------------------------------------l----a~g~~d~~i~~wd~ 256 (357)
T 4g56_B 240 ------DT-----------------------------------------------------F----ACGDETGNVSLVNI 256 (357)
T ss_dssp ------TE-----------------------------------------------------E----EEEESSSCEEEEES
T ss_pred ------ce-----------------------------------------------------E----EEeecccceeEEEC
Confidence 00 0 12357899999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
.+++.+..+.+|..+|.+|+|+|+| ++|||++.||+ |+|||+. ++ .+.+. .+|+ ..
T Consensus 257 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~-------~~-------------~~~~~-~~H~-~~ 313 (357)
T 4g56_B 257 KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDAD-------FS-------------EVFRD-LSHR-DF 313 (357)
T ss_dssp SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTT-------SC-------------EEEEE-CCCS-SC
T ss_pred CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECC-------CC-------------cEeEE-CCCC-CC
Confidence 9999999999999999999999998 58999999998 8999985 23 33444 3665 45
Q ss_pred EEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 452 IQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 452 I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
|++|+||| |+++||+++.||+|+||++...+..
T Consensus 314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 99999998 8999999999999999999765543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=216.43 Aligned_cols=267 Identities=11% Similarity=0.091 Sum_probs=179.0
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC----ceEEeeecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN----VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~----~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
..|.+.|..+.|.. ...+.++..+.|+.+++||+..... ....+..|.+.|..+.+.|..
T Consensus 14 ~gH~~~V~~l~~~~-----~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg----------- 77 (319)
T 3frx_A 14 EGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG----------- 77 (319)
T ss_dssp CCCSSCEEEEEECS-----SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-----------
T ss_pred ccccceEEEEEccC-----CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-----------
Confidence 45778888888852 1236788889999999999975332 123456788899888887642
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cE
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RI 211 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~ 211 (627)
.+|+... .+++|+|||+++++.+.++. +...|.+|++++ ++
T Consensus 78 --~~l~s~s----------------------------------~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 121 (319)
T 3frx_A 78 --AYALSAS----------------------------------WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121 (319)
T ss_dssp --SEEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCE
T ss_pred --CEEEEEe----------------------------------CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCE
Confidence 4554322 24789999999999999998 556999999987 67
Q ss_pred EEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 212 VAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 212 LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
|+++. ++.|++||+. ++++.++.+|... +.. +++.+....
T Consensus 122 l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~-------------v~~-------~~~~~~~~~------------------ 162 (319)
T 3frx_A 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDW-------------VSQ-------VRVVPNEKA------------------ 162 (319)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEECCCSSC-------------EEE-------EEECCC---------------------
T ss_pred EEEEeCCCeEEEEECC-CCeEEEEeccCCc-------------EEE-------EEEccCCCC------------------
Confidence 77775 5589999996 4566677666432 222 233221100
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
..+ +. .+ ..++.||.|++|
T Consensus 163 -----~~~------------------------~~----------------------------~l----~s~~~d~~i~~w 181 (319)
T 3frx_A 163 -----DDD------------------------SV----------------------------TI----ISAGNDKMVKAW 181 (319)
T ss_dssp --------------------------------CC----------------------------EE----EEEETTSCEEEE
T ss_pred -----CCC------------------------cc----------------------------EE----EEEeCCCEEEEE
Confidence 000 00 00 134579999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCC----C----------CCCCCccccCCCCc
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSK----G----------RSGSASQTYDWTSS 436 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~----~----------~~g~~~~~~~~~~~ 436 (627)
|+.+.+....+.+|..+|.+++|+|+|++||+++.||+ |+|||+...... . +++....... ..
T Consensus 182 d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~--~~ 258 (319)
T 3frx_A 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT--AT 258 (319)
T ss_dssp ETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE--TT
T ss_pred ECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc--CC
Confidence 99999999999999999999999999999999999998 899998621000 0 0000000000 00
Q ss_pred eeEEEE---------Eee---cC---CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 437 HVHLYK---------LHR---GM---TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~---------l~r---G~---t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+++. ++. +. ....|.+++|||||++|++++.||+|+||++..
T Consensus 259 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 259 GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 011221 111 11 122488899999999999999999999999853
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=226.34 Aligned_cols=260 Identities=15% Similarity=0.086 Sum_probs=181.4
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecC----------CCCCceEEeeecCCceEEEEEeeCCCCCCCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVE----------DATNVSELVSRRDDPVTFLQMQPLPAKSDGQE 130 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~----------~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D 130 (627)
....|..+.|.. | .++|+.|.+..+++||.. .........-.++.+|..+.+.|.
T Consensus 29 ~~~~v~~~~fs~----d---G~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------- 93 (344)
T 4gqb_B 29 MERQLEAARYRS----D---GALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-------- 93 (344)
T ss_dssp CCSEEEEEEECT----T---SCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--------
T ss_pred ccCCEEEEEECC----C---CCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--------
Confidence 445688899963 1 346667778888888732 111112222345677888888764
Q ss_pred CcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-----cCCeEEEE
Q 046828 131 GFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-----FRSTVYMV 205 (627)
Q Consensus 131 ~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-----f~s~V~sV 205 (627)
..|++.. .+++|+|||+++++.+.+++ +...|.+|
T Consensus 94 ------~~l~~~s----------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v 133 (344)
T 4gqb_B 94 ------RGILVAS----------------------------------DSGAVELWELDENETLIVSKFCKYEHDDIVSTV 133 (344)
T ss_dssp ------TEEEEEE----------------------------------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEE
T ss_pred ------CeEEEEE----------------------------------CCCEEEEEeccCCCceeEeeccccCCCCCEEEE
Confidence 1233321 13789999999998776654 45699999
Q ss_pred EecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCC
Q 046828 206 RCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQ 282 (627)
Q Consensus 206 ~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q 282 (627)
+|++ ++|+++. ++.|++||+.+++.++++.+|..+ +. .+++.++...
T Consensus 134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------------V~-------~~~~~~~~~~---------- 183 (344)
T 4gqb_B 134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------------VT-------CVAASPHKDS---------- 183 (344)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EE-------EEEECSSCTT----------
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc-------------eE-------EEEecCCCCC----------
Confidence 9997 6888876 557999999999999999887653 22 2344332100
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCC
Q 046828 283 SLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTD 362 (627)
Q Consensus 283 ~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~ 362 (627)
+ + .+++
T Consensus 184 -----------------------------~-----------------------------------------l----~s~s 189 (344)
T 4gqb_B 184 -----------------------------V-----------------------------------------F----LSCS 189 (344)
T ss_dssp -----------------------------E-----------------------------------------E----EEEE
T ss_pred -----------------------------c-----------------------------------------e----eeec
Confidence 0 0 1245
Q ss_pred CCCeEEEEECCCCeEEEEec--cCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 363 IAGMVVVKDIVSRSVISQFR--AHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.||.|+|||+.+++.+..+. .|...+.+++|+| ++.+||+++.||+ |+|||+. ++. .
T Consensus 190 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~-------~~~------------~ 249 (344)
T 4gqb_B 190 EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTK-------STS------------C 249 (344)
T ss_dssp TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESC-------C--------------C
T ss_pred cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECC-------CCc------------E
Confidence 78999999999999888875 4566799999999 4678999999997 8999986 231 3
Q ss_pred EEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~ 502 (627)
+..+ +||.. .|.+|+|+||+ ++||+++.|++|+||++.. +....+..|...+....+.|.
T Consensus 250 ~~~~-~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~~~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 250 VLSS-AVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SELFRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp CEEE-ECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTC-CEEEEECCCSSCEEEEEECSS
T ss_pred EEEE-cCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CcEEEEcCCCCCEEEEEEeCC
Confidence 4444 57654 59999999998 5899999999999999875 344566778766655444444
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=213.31 Aligned_cols=263 Identities=11% Similarity=0.127 Sum_probs=179.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|.+.|..+.|+. .++.+++.+.|+.++|||++... .....+..|.++|..+.+.|.. + ..
T Consensus 6 ~~h~~~V~~~~~s~------~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~------~-----g~ 68 (297)
T 2pm7_B 6 NAHNEMIHDAVMDY------YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------F-----GT 68 (297)
T ss_dssp CSCSSCEEEEEECT------TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG------G-----CS
T ss_pred cCCcCceEEEEECC------CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC------c-----CC
Confidence 35778899999973 24788889999999999998532 3445667799999999986531 0 14
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC----c
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP----R 210 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~----~ 210 (627)
+|+... .+++|+|||+++++ .+.++. +...|.+|+|++ +
T Consensus 69 ~l~s~s----------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~ 114 (297)
T 2pm7_B 69 ILASCS----------------------------------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP 114 (297)
T ss_dssp EEEEEE----------------------------------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEEEc----------------------------------CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc
Confidence 555432 24789999999884 566666 456999999986 4
Q ss_pred EEEEEe-CCeEEEEeCCCCce--eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLES--KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~--~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
+|+++. ++.|++||+.+.+. ...+.+|..+ +..++ +.+..... .+.
T Consensus 115 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~-------------v~~~~-------~~p~~~~~--~~~--------- 163 (297)
T 2pm7_B 115 MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSAS-------WAPATIEE--DGE--------- 163 (297)
T ss_dssp EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC-------------EEEEE-------ECCCC-----------------
T ss_pred EEEEEECCCcEEEEEecCCCceeeeeeecccCc-------------cceEe-------ecCCcccc--ccc---------
Confidence 777775 56899999987642 3455555432 22333 33211000 000
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
+. + .++ ++ ..+.++.||.|
T Consensus 164 --------------------------------~~-~-----------~~~--------------~~---~l~sgs~D~~v 182 (297)
T 2pm7_B 164 --------------------------------HN-G-----------TKE--------------SR---KFVTGGADNLV 182 (297)
T ss_dssp ----------------------------------------------------------------CC---EEEEEETTSCE
T ss_pred --------------------------------CC-C-----------CCC--------------cc---eEEEEcCCCcE
Confidence 00 0 000 00 01135689999
Q ss_pred EEEECCCCe----EEEEeccCCCCeEEEEECCCC---CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 368 VVKDIVSRS----VISQFRAHTSPISALCFDRSG---TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 368 ~IwD~~s~~----~l~~~~aH~~~Is~laFspdG---~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+|||+.+++ .+..+.+|..+|.+|+|+|++ .+||+++.||+ |+|||+... .+. ...
T Consensus 183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~-----~~~-----------~~~ 245 (297)
T 2pm7_B 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNE-----QGP-----------WKK 245 (297)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESST-----TSC-----------CEE
T ss_pred EEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCC-----CCc-----------cce
Confidence 999998765 667899999999999999995 89999999998 799998621 010 111
Q ss_pred EEEe-ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 441 YKLH-RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 441 ~~l~-rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+. .++ ...|.+++|+||+++||+++.||+|+||+....+
T Consensus 246 ~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 246 TLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp EESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 1221 233 3469999999999999999999999999987543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-23 Score=217.93 Aligned_cols=258 Identities=11% Similarity=0.041 Sum_probs=188.8
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|.+.|..+.|.. ..+.+++.+.|+.++|||+.+.. ....+..+...|..+.+.|.. .+|
T Consensus 62 gH~~~V~~~~~s~------d~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~~~~~~v~~~~~sp~g-------------~~l 121 (354)
T 2pbi_B 62 GHGNKVLCMDWCK------DKRRIVSSSQDGKVIVWDSFTTN-KEHAVTMPCTWVMACAYAPSG-------------CAI 121 (354)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCEEEECTTS-------------SEE
T ss_pred CCCCeEEEEEECC------CCCEEEEEeCCCeEEEEECCCCC-cceEEecCCCCEEEEEECCCC-------------CEE
Confidence 5778899999963 23788999999999999998755 344556677778888877642 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC------ceEEEEe-cCCeEEEEEecC--c
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH------NYVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~------~~V~tL~-f~s~V~sV~~s~--~ 210 (627)
+..+ .++++++|++... +....+. +...|.++.|++ +
T Consensus 122 asg~----------------------------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 167 (354)
T 2pbi_B 122 ACGG----------------------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167 (354)
T ss_dssp EEES----------------------------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS
T ss_pred EEee----------------------------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC
Confidence 4321 2378999998754 3455665 456899999987 4
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
.|+++. ++.|++||+.+++.+.++.+|..+ +..+ ++.+...
T Consensus 168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-------------v~~~-------~~~~~~~------------------ 209 (354)
T 2pbi_B 168 QILTASGDGTCALWDVESGQLLQSFHGHGAD-------------VLCL-------DLAPSET------------------ 209 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEE-------EECCCSS------------------
T ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-------------eEEE-------EEEeCCC------------------
Confidence 666654 668999999999999999887543 2222 3322100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+.. + ..++.||.|++
T Consensus 210 --------g~~-----------------------------------------------------l----~sgs~Dg~v~~ 224 (354)
T 2pbi_B 210 --------GNT-----------------------------------------------------F----VSGGCDKKAMV 224 (354)
T ss_dssp --------CCE-----------------------------------------------------E----EEEETTSCEEE
T ss_pred --------CCE-----------------------------------------------------E----EEEeCCCeEEE
Confidence 000 0 12457899999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
||+.+++.+..+..|..+|.+++|+|+|.+||+++.||+ |+|||+. .+ ..+..+......
T Consensus 225 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~-------~~------------~~~~~~~~~~~~ 284 (354)
T 2pbi_B 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLR-------AD------------REVAIYSKESII 284 (354)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TT------------EEEEEECCTTCC
T ss_pred EECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECC-------CC------------cEEEEEcCCCcc
Confidence 999999999999999999999999999999999999998 8999985 12 133333222222
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
..+.+++|+||+++|++++.|++|+||++........+..|...+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE
Confidence 348999999999999999999999999997655455566675544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-23 Score=214.11 Aligned_cols=236 Identities=12% Similarity=0.121 Sum_probs=177.3
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC---ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN---VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~---~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
+...|..+.|.. ..+.+++.|.++.++|||+..... +...+..|.+.|.++.+.+..
T Consensus 96 ~~~~v~~~~~s~------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------- 155 (340)
T 1got_B 96 RSSWVMTCAYAP------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-------------- 155 (340)
T ss_dssp SSSCEEEEEECT------TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--------------
T ss_pred CCccEEEEEECC------CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--------------
Confidence 445577777753 236788888999999999987542 234456688899888887542
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV 214 (627)
.|+... .+++|++||+++++.+.++. +...|.++++++ ++|++
T Consensus 156 ~l~s~s----------------------------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 156 QIVTSS----------------------------------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cEEEEE----------------------------------CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 233222 13679999999999999998 456999999987 67777
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+. ++.|++||+.+++.+.++.+|..+ +..+++ .++...
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~-------~p~~~~--------------------- 240 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESD-------------INAICF-------FPNGNA--------------------- 240 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSC-------------EEEEEE-------CTTSSE---------------------
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCC-------------EEEEEE-------cCCCCE---------------------
Confidence 75 568999999999998888776543 223333 322100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
+ +.++.||.|+|||+.
T Consensus 241 ------------------l----------------------------------------------~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 241 ------------------F----------------------------------------------ATGSDDATCRLFDLR 256 (340)
T ss_dssp ------------------E----------------------------------------------EEEETTSCEEEEETT
T ss_pred ------------------E----------------------------------------------EEEcCCCcEEEEECC
Confidence 0 023478999999999
Q ss_pred CCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 374 SRSVISQFRA--HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 374 s~~~l~~~~a--H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
+++.+..+.. +...|.+++|+|+|++|++++.||+ |+|||+. .+ ..+..+ .||+. .
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~-------~~------------~~~~~~-~~h~~-~ 314 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDAL-------KA------------DRAGVL-AGHDN-R 314 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETT-------TC------------CEEEEE-ECCSS-C
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcc-------cC------------cEeeEe-ecCCC-c
Confidence 9988877753 3457999999999999999999997 8999985 22 144444 67764 6
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
|.+|+|+||+++||+++.||+|+||+
T Consensus 315 v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=215.63 Aligned_cols=262 Identities=15% Similarity=0.194 Sum_probs=176.0
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecC------------------CceEEEEEeeC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRD------------------DPVTFLQMQPL 122 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~d------------------G~V~~v~~lp~ 122 (627)
+.+.|..+.|.. + .+.|+.|.++.++|||+.+...+.++ ..+. ..|+.+.+.|.
T Consensus 63 h~~~V~~v~fsp----d---g~~la~g~~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 63 HTSVVCCVKFSN----D---GEYLATGCNKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp CSSCCCEEEECT----T---SSEEEEECBSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT
T ss_pred CCCEEEEEEECC----C---CCEEEEEcCCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC
Confidence 667777888853 1 34666788999999999986533332 2221 12455555432
Q ss_pred CCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCe
Q 046828 123 PAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRST 201 (627)
Q Consensus 123 p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~ 201 (627)
..+|+... .+++|+|||+++++.+.+++ +...
T Consensus 135 -------------g~~l~s~~----------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~ 167 (393)
T 1erj_A 135 -------------GKFLATGA----------------------------------EDRLIRIWDIENRKIVMILQGHEQD 167 (393)
T ss_dssp -------------SSEEEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSC
T ss_pred -------------CCEEEEEc----------------------------------CCCeEEEEECCCCcEEEEEccCCCC
Confidence 24554322 13679999999999999998 5569
Q ss_pred EEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCc
Q 046828 202 VYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGR 278 (627)
Q Consensus 202 V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr 278 (627)
|++++|++ +.|+++. +++|++||+.+++...++..+.. .. .+++.+.+
T Consensus 168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------------v~-------~~~~~~~~-------- 218 (393)
T 1erj_A 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--------------VT-------TVAVSPGD-------- 218 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--------------EE-------EEEECSTT--------
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCC--------------cE-------EEEEECCC--------
Confidence 99999987 6777765 56899999999988776643211 11 22332211
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccc
Q 046828 279 LSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHS 358 (627)
Q Consensus 279 ~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~ 358 (627)
+.+ +
T Consensus 219 -------------------~~~-----------------------------------------------------l---- 222 (393)
T 1erj_A 219 -------------------GKY-----------------------------------------------------I---- 222 (393)
T ss_dssp -------------------CCE-----------------------------------------------------E----
T ss_pred -------------------CCE-----------------------------------------------------E----
Confidence 000 0
Q ss_pred cCCCCCCeEEEEECCCCeEEEEe-------ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQF-------RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~-------~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
+.++.||.|+|||+.+++.+..+ .+|..+|.+|+|+|+|++|++++.||+ |+|||+...... ...
T Consensus 223 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~-------~~~ 294 (393)
T 1erj_A 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNK-------SDS 294 (393)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----------------
T ss_pred EEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCc-------ccc
Confidence 02347899999999999888777 679999999999999999999999998 899998621100 000
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
...........+ .||+. .|.+++|+||+++|++++.||+|+||++........+..|..
T Consensus 295 ~~~~~~~~~~~~-~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 295 KTPNSGTCEVTY-IGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp ------CEEEEE-ECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cCCCCCcceEEE-ecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence 000000123333 56653 599999999999999999999999999986554445556643
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-22 Score=202.88 Aligned_cols=255 Identities=13% Similarity=0.183 Sum_probs=188.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..|.+.|..+.|.. ..+.+++.+.++.++|||+.+.. ....+..|.+.|..+.+.|.. .+
T Consensus 20 ~gh~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~-------------~~ 79 (312)
T 4ery_A 20 AGHTKAVSSVKFSP------NGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDS-------------NL 79 (312)
T ss_dssp CCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS-------------SE
T ss_pred cccCCcEEEEEECC------CCCEEEEeeCCCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCC-------------CE
Confidence 35678899999963 23678888889999999998754 566677888999999887643 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVG 215 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~ 215 (627)
|+... .+++|++||+++++.+.+++. ...|.++.+++ ++|+++
T Consensus 80 l~s~~----------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 125 (312)
T 4ery_A 80 LVSAS----------------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125 (312)
T ss_dssp EEEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEC----------------------------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 55432 136799999999999999984 56899999987 677776
Q ss_pred e-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 216 L-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 216 ~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
. +++|++||+.+++.+..+..|..+ +.. +++.++...
T Consensus 126 ~~d~~i~iwd~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~~---------------------- 163 (312)
T 4ery_A 126 SFDESVRIWDVKTGKCLKTLPAHSDP-------------VSA-------VHFNRDGSL---------------------- 163 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSC-------------EEE-------EEECTTSSE----------------------
T ss_pred eCCCcEEEEECCCCEEEEEecCCCCc-------------EEE-------EEEcCCCCE----------------------
Confidence 5 568999999999988887665433 222 333322100
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+ ..+..||.|+|||+.+
T Consensus 164 -----------------l----------------------------------------------~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 164 -----------------I----------------------------------------------VSSSYDGLCRIWDTAS 180 (312)
T ss_dssp -----------------E----------------------------------------------EEEETTSCEEEEETTT
T ss_pred -----------------E----------------------------------------------EEEeCCCcEEEEECCC
Confidence 0 0234689999999999
Q ss_pred CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc--
Q 046828 375 RSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV-- 451 (627)
Q Consensus 375 ~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~-- 451 (627)
++.+..+. .|..+|.+++|+|+|++|++++.||+ |+|||+. ++ ..+..+ .++....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~-------~~------------~~~~~~-~~~~~~~~~ 239 (312)
T 4ery_A 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYS-------KG------------KCLKTY-TGHKNEKYC 239 (312)
T ss_dssp CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETT-------TT------------EEEEEE-CSSCCSSSC
T ss_pred CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECC-------CC------------cEEEEE-EecCCceEE
Confidence 98887765 56788999999999999999999997 8999986 23 133333 4554322
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccc
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSH 493 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~ 493 (627)
+....+.+++++|++++.||+|+||++........+..|...
T Consensus 240 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281 (312)
T ss_dssp CCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc
Confidence 333334478999999999999999999876666666677543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-22 Score=207.74 Aligned_cols=259 Identities=17% Similarity=0.176 Sum_probs=173.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
.|.+.|..+.|........+.+.++..+.|+.++|||+.... .....+..|.+.|..+.+.|..
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~---------- 88 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN---------- 88 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST----------
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC----------
Confidence 477889888884221111134678888889999999997632 1234566788899988887642
Q ss_pred CCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--c
Q 046828 134 NSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 134 ~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~ 210 (627)
.+|+... .+++|+|||+++++.++++. +...|++|+|++ +
T Consensus 89 ---~~l~s~s----------------------------------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~ 131 (343)
T 2xzm_R 89 ---CFAISSS----------------------------------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131 (343)
T ss_dssp ---TEEEEEE----------------------------------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT
T ss_pred ---CEEEEEc----------------------------------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC
Confidence 4554322 24789999999999999998 556999999997 5
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
.|+++. +++|++||+.. +....+...... ...+ ..++|.+...... .
T Consensus 132 ~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~-------------~~~v----~~~~~~~~~~~~~---~----------- 179 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILG-ECKFSSAEKENH-------------SDWV----SCVRYSPIMKSAN---K----------- 179 (343)
T ss_dssp EEEEEETTSCEEEEESSS-CEEEECCTTTSC-------------SSCE----EEEEECCCCCSCS---C-----------
T ss_pred EEEEEcCCCEEEEEeccC-CceeeeecccCC-------------Ccee----eeeeecccccccc---c-----------
Confidence 777665 66899999973 333332211000 0001 2344443211000 0
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+ .|. +. ....++.||.|+|
T Consensus 180 -------------------------------------~-------~~~--------------~~---~l~s~~~d~~i~i 198 (343)
T 2xzm_R 180 -------------------------------------V-------QPF--------------AP---YFASVGWDGRLKV 198 (343)
T ss_dssp -------------------------------------C-------CSS--------------CC---EEEEEETTSEEEE
T ss_pred -------------------------------------c-------CCC--------------CC---EEEEEcCCCEEEE
Confidence 0 000 00 0013467999999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
|| ...+.+..+.+|..+|.+++|+|+|++||+++.||+ |+|||+... +. ....+..+
T Consensus 199 wd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~------~~------------~~~~~~~~--- 255 (343)
T 2xzm_R 199 WN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNL------TY------------PQREFDAG--- 255 (343)
T ss_dssp EE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCC------SS------------CSEEEECS---
T ss_pred Ec-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCC------cc------------cceeecCC---
Confidence 99 456778889999999999999999999999999998 899998411 10 11222222
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..|.+++|+||+++|+++ .|++|+||++....
T Consensus 256 ~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 256 STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 349999999999998765 57789999997644
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-23 Score=209.59 Aligned_cols=220 Identities=14% Similarity=0.186 Sum_probs=168.3
Q ss_pred ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEE
Q 046828 103 VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAV 182 (627)
Q Consensus 103 ~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV 182 (627)
....+..|.+.|..+.+.|.. ++|+... .+++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~-------------~~l~s~~----------------------------------~dg~v 37 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTE-------------PWVLTTL----------------------------------YSGRV 37 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSS-------------SEEEEEE----------------------------------TTSEE
T ss_pred eEEeecCCCCceEEEEECCCC-------------CEEEEEc----------------------------------CCCcE
Confidence 456788899999999998753 6765432 13789
Q ss_pred EEEECCCCceEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceee
Q 046828 183 RFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMA 258 (627)
Q Consensus 183 ~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iA 258 (627)
+|||+++++.++++.. ..+|.+++|++ ++|+++. +++|++||+.+++.+.++.+|..+ +..+
T Consensus 38 ~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-------------v~~~- 103 (304)
T 2ynn_A 38 ELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRSI- 103 (304)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEE-
T ss_pred EEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc-------------EEEE-
Confidence 9999999999999985 45999999987 6787776 558999999999999999888654 2233
Q ss_pred EcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCC
Q 046828 259 VGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDG 338 (627)
Q Consensus 259 l~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g 338 (627)
++.++... +
T Consensus 104 ------~~~~~~~~---------------------------------------l-------------------------- 112 (304)
T 2ynn_A 104 ------AVHPTKPY---------------------------------------V-------------------------- 112 (304)
T ss_dssp ------EECSSSSE---------------------------------------E--------------------------
T ss_pred ------EEcCCCCE---------------------------------------E--------------------------
Confidence 33332100 0
Q ss_pred CCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCC
Q 046828 339 SSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 339 ~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.+++.||+|+|||+.++ .....+.+|..+|.+++|+| ++.+||+++.||+ |+|||+.
T Consensus 113 --------------------~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~-v~iwd~~ 171 (304)
T 2ynn_A 113 --------------------LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLG 171 (304)
T ss_dssp --------------------EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE-EEEEETT
T ss_pred --------------------EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe-EEEEECC
Confidence 02357899999999887 55678899999999999999 6899999999998 8999985
Q ss_pred CCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 417 p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
. +. ....+..++. ..|..++|+| |+++|++++.|++|+||++........+..|...+
T Consensus 172 -~------~~------------~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v 231 (304)
T 2ynn_A 172 -Q------ST------------PNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (304)
T ss_dssp -C------SS------------CSEEEECCCT-TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred -C------CC------------ccceeccCCc-CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE
Confidence 1 21 2334444443 3588999987 88999999999999999998766566677776544
Q ss_pred c
Q 046828 495 D 495 (627)
Q Consensus 495 ~ 495 (627)
.
T Consensus 232 ~ 232 (304)
T 2ynn_A 232 S 232 (304)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-22 Score=209.37 Aligned_cols=235 Identities=12% Similarity=0.104 Sum_probs=176.0
Q ss_pred CcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-----CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 63 DQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-----NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 63 d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-----~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|..+.|.. .+..+++.|.++.++||++.... .....+..|.+.|..+.+.|.. .
T Consensus 107 ~~v~~~~~sp------~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~ 167 (354)
T 2pbi_B 107 TWVMACAYAP------SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-------------M 167 (354)
T ss_dssp SCCCEEEECT------TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-------------S
T ss_pred CCEEEEEECC------CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-------------C
Confidence 3455556542 34778889999999999997532 2244566788999888887643 3
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC----cEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP----RIV 212 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~----~~L 212 (627)
.|+..+ .+++|++||+++++.++++.. ...|.++.+++ ++|
T Consensus 168 ~l~t~s----------------------------------~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 168 QILTAS----------------------------------GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp EEEEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEEEEe----------------------------------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 444322 137899999999999999984 55899999865 577
Q ss_pred EEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 213 AVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
+++. +++|++||+.+++.+.++.+|..+ +..+++ .++...
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~-------~p~~~~------------------- 254 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESD-------------VNSVRY-------YPSGDA------------------- 254 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEE-------CTTSSE-------------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCC-------------eEEEEE-------eCCCCE-------------------
Confidence 7775 568999999999998888776543 333333 321100
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
+ +.++.||.|+|||
T Consensus 255 --------------------l----------------------------------------------~s~s~D~~v~lwd 268 (354)
T 2pbi_B 255 --------------------F----------------------------------------------ASGSDDATCRLYD 268 (354)
T ss_dssp --------------------E----------------------------------------------EEEETTSCEEEEE
T ss_pred --------------------E----------------------------------------------EEEeCCCeEEEEE
Confidence 0 0234789999999
Q ss_pred CCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 372 IVSRSVISQFRAH--TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 372 ~~s~~~l~~~~aH--~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
+.+.+.+..+..+ ...+.+++|+|+|++|++++.||+ |+|||+. ++. .+..+ .||..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~-------~~~------------~~~~l-~~h~~ 327 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVL-------KGS------------RVSIL-FGHEN 327 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TCS------------EEEEE-CCCSS
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECC-------CCc------------eEEEE-ECCCC
Confidence 9999888777654 357999999999999999999998 8999985 232 44444 57754
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.|.+++||||+++||+++.||+|+||+
T Consensus 328 -~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 -RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 699999999999999999999999995
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-22 Score=212.09 Aligned_cols=275 Identities=11% Similarity=0.099 Sum_probs=184.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|.+.|..+.|.. ..+.++..+.|+.++|||+.+.. ....+..|...|..+.+.|.. .+|
T Consensus 64 gH~~~V~~~~~sp------~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~h~~~v~~~~~s~~g-------------~~l 123 (380)
T 3iz6_a 64 GHSGKVYSLDWTP------EKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPNG-------------QSV 123 (380)
T ss_dssp CCSSCEEEEEECT------TSSCEEEEETTSEEEEEETTTTE-EEEEEECCCTTCCCCEECTTS-------------SEE
T ss_pred ccccEEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCc-cceEEecCCCCEEEEEECCCC-------------CEE
Confidence 4678899999963 23678889999999999998754 344556677788777776543 444
Q ss_pred EEEEccCccC----------Cc--ce-eeeccCcccccCCCCCC---CCCCCCcCCcEEEEEECCCCceEEEEe------
Q 046828 140 LVVACDEAKN----------SG--LV-HVHVGRDGLVRDGYDEP---QPGNVAMSPTAVRFYSLRSHNYVHVLR------ 197 (627)
Q Consensus 140 avv~~d~~~~----------~g--~~-~~~~~~~~~~~~g~~~~---~~~~~~~~~~tV~lwdl~t~~~V~tL~------ 197 (627)
+..+.|..-. .+ +. ..+....+.+..-.+.| ....+...+++|++||+++++.+..+.
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 4332222100 00 00 00000000000000001 001123457899999999999998883
Q ss_pred cCCeEEEEEecC---cEEEEEe-CCeEEEEeCC-CCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCC
Q 046828 198 FRSTVYMVRCSP---RIVAVGL-AAQIYCFDAL-TLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPL 272 (627)
Q Consensus 198 f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~-t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~ 272 (627)
+...|.++.+++ ++|+++. ++.|++||+. +.+.+.++.+|..+ +..+++ .++...
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~-------------v~~v~~-------~p~~~~ 263 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD-------------INSVKF-------FPDGQR 263 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------------CCEEEE-------CTTSSE
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------------eEEEEE-------ecCCCe
Confidence 345899999964 6777775 5689999998 45666777776543 223333 321100
Q ss_pred cCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccC
Q 046828 273 LPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAG 352 (627)
Q Consensus 273 v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g 352 (627)
T Consensus 264 -------------------------------------------------------------------------------- 263 (380)
T 3iz6_a 264 -------------------------------------------------------------------------------- 263 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCeEEEEECCCCeEEEEeccCCC-------CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC
Q 046828 353 RNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTS-------PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG 425 (627)
Q Consensus 353 ~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~-------~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g 425 (627)
+ .+++.||+|+|||+.+++.+..+..|.. .|.+++|+|+|++|++++.||+ |+|||+. .+
T Consensus 264 -l----~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~-------~~ 330 (380)
T 3iz6_a 264 -F----GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTL-------LA 330 (380)
T ss_dssp -E----EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETT-------TC
T ss_pred -E----EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECC-------CC
Confidence 0 1245789999999999999888876543 4899999999999999999998 8999985 22
Q ss_pred CCccccCCCCceeEEEEE---eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 426 SASQTYDWTSSHVHLYKL---HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 426 ~~~~~~~~~~~~~~l~~l---~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
. .+..+ ..+|. ..|.+++||||+++|++++.||+|+||++..
T Consensus 331 ~------------~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 331 E------------MVLNLGTLQNSHE-GRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp C------------EEEEECCSCSSCC-CCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred c------------eEEEEecccCCCC-CceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 1 34443 24554 4599999999999999999999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-22 Score=208.11 Aligned_cols=257 Identities=15% Similarity=0.191 Sum_probs=176.2
Q ss_pred CCC-cEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCc--eEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 61 LKD-QVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNV--SELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 61 ~~d-~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~--~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
+.+ .|..+.|.. .++.+++.|.|+.++|||++..... ..+...|.+.|..+.+.|.. .
T Consensus 14 h~~~~v~~l~~sp------~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-------------~ 74 (345)
T 3fm0_A 14 HPDSRCWFLAWNP------AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-------------N 74 (345)
T ss_dssp STTSCEEEEEECT------TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-------------S
T ss_pred CCCCcEEEEEECC------CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-------------C
Confidence 445 677788853 2367888899999999999875422 12335688899999987643 5
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC--cEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP--RIV 212 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~--~~L 212 (627)
+|+... .+++|+|||+.+++ .+.+++ +...|.+|+|++ ++|
T Consensus 75 ~l~s~s----------------------------------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 120 (345)
T 3fm0_A 75 YLASAS----------------------------------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120 (345)
T ss_dssp EEEEEE----------------------------------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEEEE----------------------------------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEE
Confidence 665432 13669999998874 567777 456999999997 678
Q ss_pred EEEe-CCeEEEEeCCCCcee---EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCC
Q 046828 213 AVGL-AAQIYCFDALTLESK---FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPS 288 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~e~~---~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~ 288 (627)
+++. ++.|++||+.+.+.. ..+.+|..+ +. .+++.++...
T Consensus 121 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~-------------v~-------~~~~~p~~~~---------------- 164 (345)
T 3fm0_A 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-------------VK-------HVVWHPSQEL---------------- 164 (345)
T ss_dssp EEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------EE-------EEEECSSSSC----------------
T ss_pred EEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------eE-------EEEECCCCCE----------------
Confidence 8776 558999999876543 333334322 11 2333332100
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEE
Q 046828 289 VSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVV 368 (627)
Q Consensus 289 ~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~ 368 (627)
+ +.++.||.|+
T Consensus 165 -----------------------------------------------------------------l----~s~s~d~~i~ 175 (345)
T 3fm0_A 165 -----------------------------------------------------------------L----ASASYDDTVK 175 (345)
T ss_dssp -----------------------------------------------------------------E----EEEETTSCEE
T ss_pred -----------------------------------------------------------------E----EEEeCCCcEE
Confidence 0 1235789999
Q ss_pred EEECCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 369 VKDIVSRS--VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 369 IwD~~s~~--~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
|||+.+++ .+..+.+|..+|.+|+|+|+|++||+++.||+ |+|||+...... .+. ...........+..+ .|
T Consensus 176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~--~~~--~~~~~~~~~~~~~~~-~~ 249 (345)
T 3fm0_A 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNE--QGV--ACSGSDPSWKCICTL-SG 249 (345)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCT--TCC--CCC---CEEEEEEEE-CS
T ss_pred EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCC--ccc--eeeccCCccceeEEe-cC
Confidence 99998875 45788999999999999999999999999998 899997311100 000 000000111233333 45
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.....|++|+|+|++..||+++.|++|+||++.+.
T Consensus 250 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 44556999999999999999999999999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-22 Score=209.93 Aligned_cols=243 Identities=13% Similarity=0.156 Sum_probs=174.8
Q ss_pred EEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEc
Q 046828 65 VLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVAC 144 (627)
Q Consensus 65 V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~ 144 (627)
|..+.|.. ..+.+++.+.++.++|||++... ....+..|.+.|..+.+.|.. .+|+...
T Consensus 126 v~~v~~s~------dg~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~-------------~~l~s~s- 184 (393)
T 1erj_A 126 IRSVCFSP------DGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSG-------------DKLVSGS- 184 (393)
T ss_dssp EEEEEECT------TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTS-------------SEEEEEE-
T ss_pred EEEEEECC------CCCEEEEEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCC-------------CEEEEec-
Confidence 66677753 23677888889999999999744 455667789999999987642 4554322
Q ss_pred cCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEe-CCeE
Q 046828 145 DEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGL-AAQI 220 (627)
Q Consensus 145 d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~-~~~I 220 (627)
.+++|++||+++++.+.++.++..|..+++++ ++|+++. ++.|
T Consensus 185 ---------------------------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 185 ---------------------------------GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp ---------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred ---------------------------------CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 13789999999999999999999999999986 6787775 5689
Q ss_pred EEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcc
Q 046828 221 YCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNL 300 (627)
Q Consensus 221 ~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~ 300 (627)
++||+.+++.+..+....... .+. ...+ .-|++.++...
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~---~~h------~~~v----~~v~~~~~g~~---------------------------- 270 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESG---TGH------KDSV----YSVVFTRDGQS---------------------------- 270 (393)
T ss_dssp EEEETTTCCEEEEEC---------CCC------SSCE----EEEEECTTSSE----------------------------
T ss_pred EEEECCCCcEEEeecccccCC---CCC------CCCE----EEEEECCCCCE----------------------------
Confidence 999999998776663211000 000 0000 12333321100
Q ss_pred cchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-----
Q 046828 301 MARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR----- 375 (627)
Q Consensus 301 v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~----- 375 (627)
+ ..++.||.|+|||+.+.
T Consensus 271 -----------------------------------------------------l----~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 271 -----------------------------------------------------V----VSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp -----------------------------------------------------E----EEEETTSEEEEEEC--------
T ss_pred -----------------------------------------------------E----EEEeCCCEEEEEECCCCCCccc
Confidence 0 12457899999998753
Q ss_pred -------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 376 -------SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 376 -------~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
.....+.+|...|.+++|+|+|.+|++++.||+ |+|||+. ++. .+..+ +||.
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~-------~~~------------~~~~l-~~h~ 352 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKK-------SGN------------PLLML-QGHR 352 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETT-------TCC------------EEEEE-ECCS
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECC-------CCe------------EEEEE-CCCC
Confidence 346678899999999999999999999999997 8999986 332 44444 6776
Q ss_pred cCcEEEEEEcc------CCCEEEEEeCCCeEEEEEcCCC
Q 046828 449 SAVIQDICFSH------YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 449 ~a~I~sIaFSp------Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
. .|.+++|++ |+++||+++.||+|+||++...
T Consensus 353 ~-~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 353 N-SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp S-CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred C-CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 4 599999986 7899999999999999998643
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-22 Score=211.16 Aligned_cols=273 Identities=14% Similarity=0.135 Sum_probs=188.5
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
..+|++|.++.++|||++++. +.+++. .|.+.|.+|++.|.. .+||+..
T Consensus 116 ~n~lAvgld~tV~lWd~~tg~-~~~~~~~~~~~~~V~sv~fspdg-------------~~lasgs--------------- 166 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGT--------------- 166 (420)
T ss_dssp TSEEEEEETTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTS-------------SEEEEEE---------------
T ss_pred CCEEEEEeCCEEEEEECCCCC-EEEEEEecCCCCcEEEEEECCCC-------------CEEEEEE---------------
Confidence 569999999999999999854 556554 456789999987642 5665432
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecCcEEEEEeC-CeEEEEeCCCCc-eeEEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSPRIVAVGLA-AQIYCFDALTLE-SKFSVL 235 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~~~LaV~~~-~~I~i~D~~t~e-~~~tl~ 235 (627)
.+++|+|||+++++.++++..+ ..|.++.+++++|+++.. +.|++||..+.. .+.++.
T Consensus 167 -------------------~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~ 227 (420)
T 4gga_A 167 -------------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227 (420)
T ss_dssp -------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred -------------------CCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEec
Confidence 1367999999999999999854 599999999999998864 589999988754 445666
Q ss_pred cCCCCCCCCCCCcCcccccceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+|... ...+.+. .++|+.+..+..+.+|.....+.... ..
T Consensus 228 ~h~~~-------------~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-------------------------~~ 269 (420)
T 4gga_A 228 GHSQE-------------VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-------------------------PL 269 (420)
T ss_dssp CCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-------------------------CS
T ss_pred ccccc-------------eeeeeecCCCCeeeeeeccccceEEeeccccccce-------------------------ee
Confidence 66543 2234443 37888887766554432211000000 00
Q ss_pred cceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEE
Q 046828 314 AGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALC 392 (627)
Q Consensus 314 ~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~la 392 (627)
. ...++.+. ..+ .+ .|++ ...+.+ ..+..|+.|+|||+.+++.+..+..| ..+.++.
T Consensus 270 ~--~~~~~~~~V~~~-~~----~p~~------------~~~la~--~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~ 327 (420)
T 4gga_A 270 Q--TFTQHQGAVKAV-AW----CPWQ------------SNVLAT--GGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327 (420)
T ss_dssp E--EECCCSSCEEEE-EE----CTTC------------TTEEEE--EECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred e--eecccCCceeee-ee----CCCc------------ccEEEE--EeecCCCEEEEEeCCccccceeeccc-cceeeee
Confidence 0 00011110 001 00 0110 000110 13568999999999999999888876 4688999
Q ss_pred ECCCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 393 FDRSGTLLVTAS--IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 393 FspdG~lLaTaS--~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|+|++..|++++ .||+ |+|||+. ++ ..+.++ +||+. .|.+|+|||||++||+++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~-I~iwd~~-------~~------------~~v~~l-~gH~~-~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQ-LVIWKYP-------TM------------AKVAEL-KGHTS-RVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCC-EEEEETT-------TC------------CEEEEE-CCCSS-CEEEEEECTTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCE-EEEEECC-------CC------------cEEEEE-cCCCC-CEEEEEEcCCCCEEEEEecC
Confidence 999999999876 6888 8999985 33 256666 68864 69999999999999999999
Q ss_pred CeEEEEEcCCCCC
Q 046828 471 GTCHIFVLTPFGG 483 (627)
Q Consensus 471 gTvhIw~i~~~gg 483 (627)
|||+||++.....
T Consensus 386 ~tvriWdv~~~~~ 398 (420)
T 4gga_A 386 ETLRLWRCFELDP 398 (420)
T ss_dssp TEEEEECCSCSSC
T ss_pred CeEEEEECCCCCc
Confidence 9999999976543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-22 Score=224.90 Aligned_cols=257 Identities=14% Similarity=0.124 Sum_probs=182.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.|.+.|..+.|.. +++.++..+.++.++|||+..... ....+..|.++|..+.+.|.. .+
T Consensus 57 ~h~~~v~~~~~sp------dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg-------------~~ 117 (611)
T 1nr0_A 57 EHSHQTTVAKTSP------SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-------------KR 117 (611)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-------------CE
T ss_pred CCCCceEEEEECC------CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC-------------CE
Confidence 4677888899953 246778888899999999976442 234566788999999988643 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecCc---EEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSPR---IVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~~---~LaV 214 (627)
|+.++.+.. ...+|++|| +++.++++.. ...|.+|+|++. +|++
T Consensus 118 l~~~~~~~~------------------------------~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s 165 (611)
T 1nr0_A 118 IAAVGEGRE------------------------------RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIIS 165 (611)
T ss_dssp EEEEECCSS------------------------------CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred EEEEECCCC------------------------------ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEE
Confidence 665431100 125688888 5667777774 459999999982 5777
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+. ++.|++||..+++.+.++.+|..+ +..+ +|.++...
T Consensus 166 ~s~D~~v~lwd~~~~~~~~~l~~H~~~-------------V~~v-------~fspdg~~--------------------- 204 (611)
T 1nr0_A 166 GSDDNTVAIFEGPPFKFKSTFGEHTKF-------------VHSV-------RYNPDGSL--------------------- 204 (611)
T ss_dssp EETTSCEEEEETTTBEEEEEECCCSSC-------------EEEE-------EECTTSSE---------------------
T ss_pred EeCCCeEEEEECCCCeEeeeeccccCc-------------eEEE-------EECCCCCE---------------------
Confidence 76 557999999999888888777543 3333 33332100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
+ ++++.||+|+|||+.
T Consensus 205 ------------------l----------------------------------------------as~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 205 ------------------F----------------------------------------------ASTGGDGTIVLYNGV 220 (611)
T ss_dssp ------------------E----------------------------------------------EEEETTSCEEEEETT
T ss_pred ------------------E----------------------------------------------EEEECCCcEEEEECC
Confidence 0 023478999999999
Q ss_pred CCeEEEEec-------cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC--------------
Q 046828 374 SRSVISQFR-------AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD-------------- 432 (627)
Q Consensus 374 s~~~l~~~~-------aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~-------------- 432 (627)
+++.+..+. +|..+|.+++|+|||++|||++.||+ |+|||+. . +.......
T Consensus 221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~-~------~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVA-T------LKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-T------TEEEEEEECCSSGGGCEEEEEE
T ss_pred CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCC-C------CceeeeecCCCCccceeEEEEE
Confidence 999998884 79999999999999999999999998 8999985 2 11000000
Q ss_pred ---------CCCc-------eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 433 ---------WTSS-------HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 433 ---------~~~~-------~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.... .....+...||+. .|.+++|+||+++|++++.|++|++|++...
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 0000 0012223357754 5999999999999999999999999999754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-23 Score=211.39 Aligned_cols=267 Identities=14% Similarity=0.142 Sum_probs=173.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|.+.|..+.|+. .++.+++.+.|+.++|||+...+. ....+..|.++|..+.+.|.. + ..
T Consensus 10 ~~H~~~V~~v~~s~------~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~------~-----~~ 72 (316)
T 3bg1_A 10 TSHEDMIHDAQMDY------YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM------Y-----GN 72 (316)
T ss_dssp ----CCEEEEEECG------GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG------G-----SS
T ss_pred ccccCeEEEeeEcC------CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC------C-----CC
Confidence 45788999999974 236788888899999999987542 234456789999999986521 0 13
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC----c
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP----R 210 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~----~ 210 (627)
+|+.++ .+++|+|||+++++ .+.++. +...|.+|+|++ .
T Consensus 73 ~l~s~s----------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~ 118 (316)
T 3bg1_A 73 ILASCS----------------------------------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL 118 (316)
T ss_dssp CEEEEE----------------------------------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS
T ss_pred EEEEEE----------------------------------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCc
Confidence 555432 13679999999884 566665 556999999987 3
Q ss_pred EEEEEe-CCeEEEEeCCCCcee---EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESK---FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTP 286 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~---~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~ 286 (627)
+|+++. ++.|++||+.+.+.. ..+.+|..+ +..+++ .+.... +
T Consensus 119 ~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~-------------v~~~~~-------~~~~~~----~--------- 165 (316)
T 3bg1_A 119 ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG-------------CNAVSW-------APAVVP----G--------- 165 (316)
T ss_dssp CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC-------------BCCCEE-------CCCCCC--------------
T ss_pred EEEEEcCCCCEEEEecCCCCCcceeeeeccccCC-------------cceEEE-------ccccCC----c---------
Confidence 677775 568999999876422 111122211 222333 321100 0
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe
Q 046828 287 PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 287 ~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~ 366 (627)
.++ . .+.+.. ++ .+. ..+.++.||.
T Consensus 166 ------------~~~------------~--------------------~~~~~~----~~----~~~---~l~sgs~D~~ 190 (316)
T 3bg1_A 166 ------------SLI------------D--------------------HPSGQK----PN----YIK---RFASGGCDNL 190 (316)
T ss_dssp -------------------------------------------------CCSCC----CC----CCC---BEECCBTTSB
T ss_pred ------------ccc------------c--------------------cccccC----cc----ccc---eEEEecCCCe
Confidence 000 0 000000 00 000 0124678999
Q ss_pred EEEEECCCC---eEEEEeccCCCCeEEEEECCCC----CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 367 VVVKDIVSR---SVISQFRAHTSPISALCFDRSG----TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 367 V~IwD~~s~---~~l~~~~aH~~~Is~laFspdG----~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
|+|||+... +.+..|.+|..+|.+++|+|++ .+||+++.||+ |+||++.... .+. +. ..
T Consensus 191 v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v~iw~~~~~~----~~~------~~---~~ 256 (316)
T 3bg1_A 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDAS----SNT------WS---PK 256 (316)
T ss_dssp CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-EEEEECSSTT----CCC------CB---CC
T ss_pred EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-EEEEEccCcc----ccc------hh---hh
Confidence 999999765 4677899999999999999997 89999999998 8999985210 010 00 01
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+ + .++. ..|.+++|+||+++||+++.||+|+||+....+
T Consensus 257 ~--~-~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 257 L--L-HKFN-DVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295 (316)
T ss_dssp E--E-EECS-SCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred h--h-hcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence 1 1 2333 469999999999999999999999999987543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=208.20 Aligned_cols=274 Identities=12% Similarity=0.121 Sum_probs=178.3
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEee-CCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQP-LPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp-~p~~~~~~D~f~~~rpL 138 (627)
.+.+.|..+.|... .....+.+++.+.++.++|||++... ....+..|.++|..+.+.| .. .+
T Consensus 67 ~~~~~v~~~~~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~-------------~~ 130 (366)
T 3k26_A 67 DADENFYTCAWTYD--SNTSHPLLAVAGSRGIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDP-------------NL 130 (366)
T ss_dssp CTTCCEEEEEEEEC--TTTCCEEEEEEETTCEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCT-------------TE
T ss_pred CCCCcEEEEEeccC--CCCCCCEEEEecCCCEEEEEEchhce-EeeeecCCCCcEEEEEECCCCC-------------CE
Confidence 46677888888643 11113566667777789999999855 4455667889999999987 33 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE----ecCCeEEEEEecC--cEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL----RFRSTVYMVRCSP--RIV 212 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL----~f~s~V~sV~~s~--~~L 212 (627)
|+... .+++|++||+++++.+..+ .+...|.++++++ +.|
T Consensus 131 l~s~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 131 LLSVS----------------------------------KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred EEEEe----------------------------------CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEE
Confidence 54432 1266999999999999998 3667999999986 677
Q ss_pred EEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 213 AVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
+++. ++.|++||+.+++.+..+..... +......+++............ ...+.
T Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~------ 231 (366)
T 3k26_A 177 MSCGMDHSLKLWRINSKRMMNAIKESYD-----------------YNPNKTNRPFISQKIHFPDFST--RDIHR------ 231 (366)
T ss_dssp EEEETTSCEEEEESCSHHHHHHHHHHHT-----------------CCGGGCSSCCCCEEECCCSEEE--CSSCS------
T ss_pred EEecCCCCEEEEECCCCccccccceeEE-----------------ecCCCCcccccceeeccCcccc--ccCCc------
Confidence 7765 56899999998876544432100 0000001111100000000000 00000
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
..+..+.+.+ ..+ ..+..+|.|++||
T Consensus 232 -------------------~~v~~~~~~~-------------------------------~~l----~~~~~d~~i~~wd 257 (366)
T 3k26_A 232 -------------------NYVDCVRWLG-------------------------------DLI----LSKSCENAIVCWK 257 (366)
T ss_dssp -------------------SCCCEEEEET-------------------------------TEE----EEECSSSEEEEEE
T ss_pred -------------------ceEEEEEEcC-------------------------------CEE----EEEecCCEEEEEe
Confidence 0000000000 001 1356799999999
Q ss_pred CCCCe--------------EEEEeccCCCCeEEEEECCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 372 IVSRS--------------VISQFRAHTSPISALCFDRS--GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 372 ~~s~~--------------~l~~~~aH~~~Is~laFspd--G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
+.+++ .+..+..|..+|.+++|+|+ |++|++++.||+ |+|||+. .+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~-------~~~~-------- 321 (366)
T 3k26_A 258 PGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLE-------VEDP-------- 321 (366)
T ss_dssp ESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECC-------SSSG--------
T ss_pred CCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECC-------CCCC--------
Confidence 98764 48889999999999999999 999999999998 8999986 2210
Q ss_pred ceeEEEEEeecCC-cCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 436 SHVHLYKLHRGMT-SAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 436 ~~~~l~~l~rG~t-~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
....+..+ .++. ...|.+++|+||+++|++++.||+|+||++.
T Consensus 322 ~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTL-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEE-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 00133344 4542 3469999999999999999999999999985
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=196.37 Aligned_cols=278 Identities=14% Similarity=0.171 Sum_probs=179.1
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC---ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN---VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~---~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
..|++.|..+.|.. ..+.+++.+.++.++|||+..... ....+..|.++|..+.+.|.. |
T Consensus 8 ~gH~~~v~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------d----- 70 (351)
T 3f3f_A 8 SGHDDLVHDVVYDF------YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE------Y----- 70 (351)
T ss_dssp CCCSSCEEEEEECS------SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG------G-----
T ss_pred cccccceeEEEEcC------CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC------C-----
Confidence 45788999999964 236677788888899999997553 233445688999999998631 0
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC---------ceEEEEe-cCCeEEEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH---------NYVHVLR-FRSTVYMV 205 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~---------~~V~tL~-f~s~V~sV 205 (627)
..+|+... .+++|++||++++ +.+.++. +...|.++
T Consensus 71 ~~~l~s~~----------------------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 116 (351)
T 3f3f_A 71 GRIIASAS----------------------------------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSV 116 (351)
T ss_dssp CSEEEEEE----------------------------------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEE
T ss_pred CCEEEEEc----------------------------------CCCeEEEEecCCCcccccccCcceeeeecccCCceeEE
Confidence 14555432 1366999999987 5577776 55699999
Q ss_pred EecCc----EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeE-------cCceEEEcCCCCCc
Q 046828 206 RCSPR----IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAV-------GPRWLAYASNNPLL 273 (627)
Q Consensus 206 ~~s~~----~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl-------~~r~LAy~~~~~~v 273 (627)
++++. +|+++. ++.|++||+.+++.+..+..... ...+.+ ....+++.+..
T Consensus 117 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~p~~--- 179 (351)
T 3f3f_A 117 KFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE--------------MKVLSIPPANHLQSDFCLSWCPSR--- 179 (351)
T ss_dssp EECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE--------------EESCSCCCSSCSCCCEEEEECCCS---
T ss_pred EEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc--------------ccccccccCCcccceeEEEeccCC---
Confidence 99863 676665 66899999998876533321000 000000 00112222110
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCc
Q 046828 274 PNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGR 353 (627)
Q Consensus 274 ~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~ 353 (627)
+....
T Consensus 180 ---------------------------------------------------------------------------~~~~~ 184 (351)
T 3f3f_A 180 ---------------------------------------------------------------------------FSPEK 184 (351)
T ss_dssp ---------------------------------------------------------------------------SSCCE
T ss_pred ---------------------------------------------------------------------------CCCcE
Confidence 00000
Q ss_pred ccccccCCCCCCeEEEEECCCCeE--EEEeccCCCCeEEEEECCCC----CEEEEEeCCCCEEEEEeCCCCCCCCC----
Q 046828 354 NASHSSDTDIAGMVVVKDIVSRSV--ISQFRAHTSPISALCFDRSG----TLLVTASIHGNNINIFRIMPSSSKGR---- 423 (627)
Q Consensus 354 ~~~~~~~~~~dG~V~IwD~~s~~~--l~~~~aH~~~Is~laFspdG----~lLaTaS~dGt~I~Vwdi~p~~~~~~---- 423 (627)
+ ..+..++.+.+|+...++. +..+.+|..+|.+++|+|+| .+|++++.||+ |+|||+........
T Consensus 185 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~ 259 (351)
T 3f3f_A 185 L----AVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEES 259 (351)
T ss_dssp E----EEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC--------
T ss_pred E----EEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCc
Confidence 1 1235678888888877764 77888999999999999999 89999999998 89999862100000
Q ss_pred -----------------CCCCc-----cccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 424 -----------------SGSAS-----QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 424 -----------------~g~~~-----~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+... ....+...........++|. ..|.+++|+||+++|++++.||+|+||+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 260 LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN-GEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTS-SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc-ccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 00000 00000011112333335665 35999999999999999999999999999875
Q ss_pred CCee
Q 046828 482 GGET 485 (627)
Q Consensus 482 gg~~ 485 (627)
....
T Consensus 339 ~~~~ 342 (351)
T 3f3f_A 339 NEFK 342 (351)
T ss_dssp SCEE
T ss_pred cchh
Confidence 5443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-22 Score=223.56 Aligned_cols=241 Identities=13% Similarity=0.151 Sum_probs=175.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.++.++.-+.|.. + .+.|+.+.++.++|||+.+.. ....+..|.+.|.++++.|.- .+|
T Consensus 16 ~~~g~~~~~~~sp------d-g~~l~~~~~~~v~l~~~~~~~-~~~~~~~h~~~v~~~~~spdg-------------~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTP------A-GDKIQYCNGTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSG-------------YYC 74 (611)
T ss_dssp CCTTCCCCCEECT------T-SSEEEEEETTEEEEEETTCSS-CCEEECCCSSCEEEEEECTTS-------------SEE
T ss_pred cccCceeEEeeCC------C-CCEEEeCCCCEEEEecCCCcc-cCeEecCCCCceEEEEECCCC-------------cEE
Confidence 3455566666742 1 235555668899999998654 456677899999999998743 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC--cEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~--~~LaV 214 (627)
|... .+++|+|||+.+++ ...++. +..+|.+|+|++ ++|++
T Consensus 75 asg~----------------------------------~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 120 (611)
T 1nr0_A 75 ASGD----------------------------------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 120 (611)
T ss_dssp EEEE----------------------------------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred EEEe----------------------------------CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEE
Confidence 5422 23789999998654 445666 556999999998 67776
Q ss_pred EeCC-----eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 215 GLAA-----QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 215 ~~~~-----~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+.++ .|++|| +++.+.++.+|..+ +. .+++.++.+.
T Consensus 121 ~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~-------------v~-------~v~f~p~~~~----------------- 161 (611)
T 1nr0_A 121 VGEGRERFGHVFLFD--TGTSNGNLTGQARA-------------MN-------SVDFKPSRPF----------------- 161 (611)
T ss_dssp EECCSSCSEEEEETT--TCCBCBCCCCCSSC-------------EE-------EEEECSSSSC-----------------
T ss_pred EECCCCceeEEEEee--CCCCcceecCCCCC-------------ce-------EEEECCCCCe-----------------
Confidence 6543 588887 45555555555432 22 2344332100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
.+ ..++.|+.|+|
T Consensus 162 ---------------------------------------------------------------~l----~s~s~D~~v~l 174 (611)
T 1nr0_A 162 ---------------------------------------------------------------RI----ISGSDDNTVAI 174 (611)
T ss_dssp ---------------------------------------------------------------EE----EEEETTSCEEE
T ss_pred ---------------------------------------------------------------EE----EEEeCCCeEEE
Confidence 00 12457899999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee----
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR---- 445 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r---- 445 (627)
||..+++.+..|.+|...|.+++|+|||++|||++.||+ |+|||+. +|. .+..+..
T Consensus 175 wd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~-------~g~------------~~~~~~~~~~~ 234 (611)
T 1nr0_A 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGV-------DGT------------KTGVFEDDSLK 234 (611)
T ss_dssp EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TCC------------EEEECBCTTSS
T ss_pred EECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc-EEEEECC-------CCc------------Eeeeecccccc
Confidence 999999999999999999999999999999999999998 8999985 332 4444433
Q ss_pred --cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 446 --GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 446 --G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
||+ ..|.+++|+||+++||+++.|++|+||++....
T Consensus 235 ~~~h~-~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 235 NVAHS-GSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp SCSSS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ccccC-CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 565 359999999999999999999999999997643
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=214.64 Aligned_cols=230 Identities=14% Similarity=0.215 Sum_probs=170.6
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
.+.|.-+.|.. ..+.+++.+.++.+++||.+ ++..+.+..|.+.|+.+.+.|.. .+|+.
T Consensus 344 ~~~v~~~~~s~------~g~~l~~~~~dg~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg-------------~~l~~ 402 (577)
T 2ymu_A 344 SSSVWGVAFSP------DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDG-------------QTIAS 402 (577)
T ss_dssp SSCEEEEEECT------TSSEEEEEETTSEEEEEETT--CCEEEEEECCSSCEEEEEECTTS-------------SCEEE
T ss_pred CCCEEEEEECC------CCCEEEEEeCCCEEEEEcCC--CCEEEEecCCCCCeEEEEECCCC-------------CEEEE
Confidence 34455555532 23566666677779999965 34466677788999999887642 44554
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-C
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-A 217 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~ 217 (627)
.. .+++|+||| .+++.++++. +...|.+++|++ ++|+++. +
T Consensus 403 ~~----------------------------------~d~~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 403 AS----------------------------------DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EE----------------------------------TTSEEEEEC-TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred Ee----------------------------------CCCEEEEEe-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 32 136799999 4678888887 556999999997 6888776 5
Q ss_pred CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCC
Q 046828 218 AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSN 297 (627)
Q Consensus 218 ~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~ 297 (627)
++|++||+ +++.+.++.+|..+ +.. +++.++...
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~-------------v~~-------~~~spd~~~------------------------- 481 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSS-------------VRG-------VAFSPDGQT------------------------- 481 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSC-------------EEE-------EEECTTSCE-------------------------
T ss_pred CEEEEEEC-CCCEEEEEcCCCCC-------------EEE-------EEEcCCCCE-------------------------
Confidence 58999996 56777788776543 222 344332100
Q ss_pred CcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE
Q 046828 298 GNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV 377 (627)
Q Consensus 298 gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~ 377 (627)
+ +.+..|+.|+|||. +++.
T Consensus 482 --------------l----------------------------------------------as~~~d~~i~iw~~-~~~~ 500 (577)
T 2ymu_A 482 --------------I----------------------------------------------ASASDDKTVKLWNR-NGQL 500 (577)
T ss_dssp --------------E----------------------------------------------EEEETTSEEEEEET-TSCE
T ss_pred --------------E----------------------------------------------EEEeCCCEEEEEcC-CCCE
Confidence 0 01346899999995 6788
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
+..+.+|..+|.+|+|+|||++||+++.||+ |+|||.. | ..+..+ +||. ..|.+|+|
T Consensus 501 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~~--------~------------~~~~~~-~~h~-~~v~~~~f 557 (577)
T 2ymu_A 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRN--------G------------QLLQTL-TGHS-SSVWGVAF 557 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECTT--------S------------CEEEEE-ECCS-SCEEEEEE
T ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeCC--------C------------CEEEEE-cCCC-CCEEEEEE
Confidence 9999999999999999999999999999997 8999963 2 145555 6775 46999999
Q ss_pred ccCCCEEEEEeCCCeEEEEE
Q 046828 458 SHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~ 477 (627)
+||+++|++++.|++|+||+
T Consensus 558 s~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 558 SPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999996
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-21 Score=196.42 Aligned_cols=264 Identities=9% Similarity=0.084 Sum_probs=189.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..+.+.|..+.|.. ..+.+++.+.++.++|||+.+.. ....+..|.+.|..+.+.|.. .+
T Consensus 29 ~~h~~~v~~~~~s~------~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~-------------~~ 88 (369)
T 3zwl_B 29 TGHERPLTQVKYNK------EGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT-------------KY 88 (369)
T ss_dssp ECCSSCEEEEEECT------TSCEEEEEESSSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS-------------SE
T ss_pred EEeeceEEEEEEcC------CCCEEEEEeCCCEEEEEeCCCch-hhhhhhhcCCcEEEEEEcCCC-------------CE
Confidence 34677888899863 23567777778889999999855 455666788999999987642 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~ 216 (627)
|+.+. .+++|++||+++++.+.++.+...|.++.+++ +.|+++.
T Consensus 89 l~s~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 134 (369)
T 3zwl_B 89 CVTGS----------------------------------ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAIL 134 (369)
T ss_dssp EEEEE----------------------------------TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEe----------------------------------CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEec
Confidence 55432 13679999999999999999999999999997 6777765
Q ss_pred C------CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeE-----cCceEEEcCCCCCcCCCCccCCCCCC
Q 046828 217 A------AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAV-----GPRWLAYASNNPLLPNTGRLSPQSLT 285 (627)
Q Consensus 217 ~------~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl-----~~r~LAy~~~~~~v~~~gr~~~q~~t 285 (627)
. +.|++||+.+.+....+....... ...+.. ....+++.++
T Consensus 135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~---------------- 186 (369)
T 3zwl_B 135 DNVMKNPGSINIYEIERDSATHELTKVSEEP------------IHKIITHEGLDAATVAGWSTK---------------- 186 (369)
T ss_dssp CCBTTBCCEEEEEEEEECTTTCCEEEECSSC------------SEEEECCTTCCCEEEEEECGG----------------
T ss_pred CCccCCCCEEEEEEecCCccceeecccccce------------eeeccCCcCccceeEEEEcCC----------------
Confidence 4 689999988766443332211100 000000 0011111110
Q ss_pred CCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCC
Q 046828 286 PPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAG 365 (627)
Q Consensus 286 ~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG 365 (627)
+.. ...+..+|
T Consensus 187 ------------------------------------------------------------------~~~---l~~~~~dg 197 (369)
T 3zwl_B 187 ------------------------------------------------------------------GKY---IIAGHKDG 197 (369)
T ss_dssp ------------------------------------------------------------------GCE---EEEEETTS
T ss_pred ------------------------------------------------------------------CCE---EEEEcCCC
Confidence 000 01235789
Q ss_pred eEEEEECCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 366 MVVVKDIVS-RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 366 ~V~IwD~~s-~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.|++||+.+ .+.+..+..|..+|.+++|+|+|.+|++++.||+ |+|||+. ++. .+..+.
T Consensus 198 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~-------~~~------------~~~~~~ 257 (369)
T 3zwl_B 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVS-------TLQ------------VLKKYE 257 (369)
T ss_dssp EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-------TCC------------EEEEEE
T ss_pred EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECC-------CCc------------eeeeec
Confidence 999999999 7889999999999999999999999999999997 8999986 231 444443
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCC--------------eEEEEEcCCCCCeeecccccccccC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRG--------------TCHIFVLTPFGGETVLQIQNSHVDR 496 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dg--------------TvhIw~i~~~gg~~~~~~h~s~v~~ 496 (627)
....|..++|+|++++|++++.++ ++++|++........+..|...+..
T Consensus 258 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~ 320 (369)
T 3zwl_B 258 ---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT 320 (369)
T ss_dssp ---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE
Confidence 234599999999999999999999 8999998877666666667654433
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-21 Score=213.20 Aligned_cols=249 Identities=14% Similarity=0.164 Sum_probs=180.9
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
+.+.|..+.|.. ..+.++..+.++.+++||++... .+.+..|...|..+.+.|.. .+|+
T Consensus 302 h~~~v~~~~~~~------~~~~l~t~~~d~~i~~w~~~~~~--~~~~~~~~~~v~~~~~s~~g-------------~~l~ 360 (577)
T 2ymu_A 302 HSSSVWGVAFSP------DGQTIASASDDKTVKLWNRNGQH--LQTLTGHSSSVWGVAFSPDG-------------QTIA 360 (577)
T ss_dssp CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTSCE--EEEECCCSSCEEEEEECTTS-------------SEEE
T ss_pred CCCCeEEEEECC------CCCEEEEEeCCCeEEEEeCCCCe--eEEEeCCCCCEEEEEECCCC-------------CEEE
Confidence 345566666642 23677778888899999987533 45556678888888876643 4554
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL- 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~- 216 (627)
... .+++|++|| .+++.+.++. +...|.+|++++ ++|+++.
T Consensus 361 ~~~----------------------------------~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 405 (577)
T 2ymu_A 361 SAS----------------------------------DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 405 (577)
T ss_dssp EEE----------------------------------TTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred EEe----------------------------------CCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeC
Confidence 322 136799999 4778888887 556999999997 6777775
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
++.|++||. +++.+.++.+|..+ +.. |++.+++..
T Consensus 406 d~~v~~~~~-~~~~~~~~~~~~~~-------------v~~-------~~~s~d~~~------------------------ 440 (577)
T 2ymu_A 406 DKTVKLWNR-NGQLLQTLTGHSSS-------------VWG-------VAFSPDDQT------------------------ 440 (577)
T ss_dssp TSEEEEECT-TCCEEEEEECCSSC-------------EEE-------EEECTTSSE------------------------
T ss_pred CCEEEEEeC-CCCEEEEecCCCCC-------------eEE-------EEECCCCCE------------------------
Confidence 557999995 56777888776543 222 344332110
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~ 376 (627)
+ +.+..|+.|++||. +++
T Consensus 441 ---------------l----------------------------------------------~~~~~d~~v~~w~~-~~~ 458 (577)
T 2ymu_A 441 ---------------I----------------------------------------------ASASDDKTVKLWNR-NGQ 458 (577)
T ss_dssp ---------------E----------------------------------------------EEEETTSEEEEEET-TSC
T ss_pred ---------------E----------------------------------------------EEEcCCCEEEEEEC-CCC
Confidence 0 01346889999996 467
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
.+..+.+|..+|.+++|+|||++||+++.||+ |+|||.. | ..+..+ .||. ..|.+|+
T Consensus 459 ~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~~--------~------------~~~~~~-~~h~-~~v~~l~ 515 (577)
T 2ymu_A 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRN--------G------------QLLQTL-TGHS-SSVRGVA 515 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEETT--------S------------CEEEEE-ECCS-SCEEEEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcCC--------C------------CEEEEE-eCCC-CCEEEEE
Confidence 88899999999999999999999999999997 8999963 2 144444 5765 4599999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDR 496 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~ 496 (627)
||||+++||+++.||+|+||+.+ ......+..|...+..
T Consensus 516 ~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~ 554 (577)
T 2ymu_A 516 FSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG 554 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEE
T ss_pred EcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEE
Confidence 99999999999999999999963 3334456777665543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-21 Score=200.69 Aligned_cols=263 Identities=11% Similarity=0.109 Sum_probs=177.3
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|++.|..+.|.. ..+.+++.+.++.++|||++... .....+..|.++|.++.+.+... ..
T Consensus 8 ~~h~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----------~~ 70 (379)
T 3jrp_A 8 NAHNELIHDAVLDY------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-----------GT 70 (379)
T ss_dssp EECCCCEEEEEECS------SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-----------CS
T ss_pred cCCcccEEEEEEcC------CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCC-----------CC
Confidence 45778899999964 23567777778889999998432 23445667889999999875421 14
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecCc----
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSPR---- 210 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~~---- 210 (627)
+|+.+. .+++|++||+++++ .+..+. +...|.++++++.
T Consensus 71 ~l~s~~----------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 116 (379)
T 3jrp_A 71 ILASCS----------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP 116 (379)
T ss_dssp EEEEEE----------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEEec----------------------------------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC
Confidence 555432 12569999999997 666666 5569999999864
Q ss_pred EEEEEe-CCeEEEEeCCCCce--eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLES--KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~--~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
+|+++. ++.|++||+.+.+. ...+..|..+ +.. +++.+..... .+..
T Consensus 117 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~~~--~~~~-------- 166 (379)
T 3jrp_A 117 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNS-------ASWAPATIEE--DGEH-------- 166 (379)
T ss_dssp EEEEEETTSEEEEEECCTTSCCCEEEEECCTTC-------------EEE-------EEECCCC-----------------
T ss_pred EEEEecCCCcEEEEecCCCCceeeEEecCCCCc-------------eEE-------EEEcCccccc--cccc--------
Confidence 666665 66899999998754 3344444332 222 3333311000 0000
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
. + .+++ ..+ ..+..||.|
T Consensus 167 ------------------------~-------~--------------~~~~-------------~~l----~~~~~dg~i 184 (379)
T 3jrp_A 167 ------------------------N-------G--------------TKES-------------RKF----VTGGADNLV 184 (379)
T ss_dssp ------------------------------------------------CTT-------------CEE----EEEETTSCE
T ss_pred ------------------------c-------C--------------CCCC-------------CEE----EEEeCCCeE
Confidence 0 0 0000 001 134578999
Q ss_pred EEEECCCCe----EEEEeccCCCCeEEEEECCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 368 VVKDIVSRS----VISQFRAHTSPISALCFDRS---GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 368 ~IwD~~s~~----~l~~~~aH~~~Is~laFspd---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+|||+.+++ .+..+.+|..+|.+++|+|+ |.+|++++.||+ |+|||+.. +.. ...
T Consensus 185 ~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~-------~~~----------~~~ 246 (379)
T 3jrp_A 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDN-------EQG----------PWK 246 (379)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESS-------TTS----------CCE
T ss_pred EEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCC-------CCc----------cce
Confidence 999998763 56788899999999999999 999999999998 79999862 110 011
Q ss_pred EEEeec-CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 441 YKLHRG-MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 441 ~~l~rG-~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+... .....|.+++|+||+++|++++.||+|+||++...+
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 222221 123459999999999999999999999999998543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=203.25 Aligned_cols=245 Identities=10% Similarity=0.091 Sum_probs=164.7
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEEeeecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
+++.|..+.|.. ..+.+++.+.++.++|||++... +....+..|.+.|..+.+.|..
T Consensus 57 h~~~v~~v~~sp------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g----------- 119 (330)
T 2hes_X 57 HKKAIRSVAWRP------HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG----------- 119 (330)
T ss_dssp CCSCEEEEEECT------TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-----------
T ss_pred ccCCEEEEEECC------CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-----------
Confidence 677888899963 23677788889999999996421 2344566788999999987643
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC----CceEEEEe-cCCeEEEEEecC
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS----HNYVHVLR-FRSTVYMVRCSP 209 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t----~~~V~tL~-f~s~V~sV~~s~ 209 (627)
.+|+.+. .+++|+|||++. .+.+.+++ +...|.+|+|++
T Consensus 120 --~~las~s----------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 120 --YYLATCS----------------------------------RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp --CEEEEEE----------------------------------TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred --CEEEEEe----------------------------------CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 4565432 136799999953 25677776 456999999987
Q ss_pred --cEEEEEe-CCeEEEEeCCCC--ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCC
Q 046828 210 --RIVAVGL-AAQIYCFDALTL--ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSL 284 (627)
Q Consensus 210 --~~LaV~~-~~~I~i~D~~t~--e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~ 284 (627)
++|+++. ++.|++||..+. +++.++.+|..+ +.. +++.++...
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~-------------v~~-------~~~~~~~~~------------ 211 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT-------------VWS-------SDFDKTEGV------------ 211 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEE-------EEECCSSSS------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc-------------EEE-------EEecCCCCe------------
Confidence 6787776 568999998776 566667666543 222 333331100
Q ss_pred CCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCC
Q 046828 285 TPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIA 364 (627)
Q Consensus 285 t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~d 364 (627)
. . + .+++.|
T Consensus 212 --------------~-------------------------~----------------------------l----~s~s~D 220 (330)
T 2hes_X 212 --------------F-------------------------R----------------------------L----CSGSDD 220 (330)
T ss_dssp --------------C-------------------------E----------------------------E----EEEETT
T ss_pred --------------e-------------------------E----------------------------E----EEEeCC
Confidence 0 0 0 124578
Q ss_pred CeEEEEECCCC--------eEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 365 GMVVVKDIVSR--------SVISQFRA-HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 365 G~V~IwD~~s~--------~~l~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
|+|+|||+.++ ..+..+.. |..+|.+++|++++ +||+++.||+ |+|||+. .+.
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~-------~~~--------- 282 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEV-------DGE--------- 282 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEE-------TTE---------
T ss_pred CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcC-------CCc---------
Confidence 99999998754 44556665 99999999999776 8999999998 7999975 221
Q ss_pred ceeEEEEEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~ 480 (627)
...+.....+|....|.+++|+| |+++||+++.||+|+||+++.
T Consensus 283 -~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 283 -WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred -eEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 01233333566544699999999 799999999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-21 Score=192.58 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=172.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEE--ee--ecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSEL--VS--RRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~el--ls--~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.+.+.|..+.|.. ..+.++..+ ++.++|||++..+....+ +. .|.+.|..+.+.|..
T Consensus 49 ~h~~~v~~~~~~~------~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------ 109 (337)
T 1gxr_A 49 NHGEVVCAVTISN------PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------ 109 (337)
T ss_dssp CCSSCCCEEEECS------SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS------------
T ss_pred cCCCceEEEEEec------CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC------------
Confidence 4566777788753 124455555 999999999876533222 22 577888888887643
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC--c
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~--~ 210 (627)
.+|++.. .+++|++||+++++ .+..+. +...|.++.+++ +
T Consensus 110 -~~l~~~~----------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 110 -CTLIVGG----------------------------------EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154 (337)
T ss_dssp -SEEEEEE----------------------------------SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS
T ss_pred -CEEEEEc----------------------------------CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC
Confidence 4555432 13679999999988 455555 345899999987 6
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+|+++. ++.|++||+.+++.+..+..|..+ ... +++.++...
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-------------i~~-------~~~~~~~~~----------------- 197 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASC-------IDISNDGTK----------------- 197 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEE-------EEECTTSSE-----------------
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeecccCc-------------eEE-------EEECCCCCE-----------------
Confidence 777775 568999999999888887665432 222 333322100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+ ..+..+|.|++
T Consensus 198 ----------------------l----------------------------------------------~~~~~dg~i~~ 209 (337)
T 1gxr_A 198 ----------------------L----------------------------------------------WTGGLDNTVRS 209 (337)
T ss_dssp ----------------------E----------------------------------------------EEEETTSEEEE
T ss_pred ----------------------E----------------------------------------------EEEecCCcEEE
Confidence 0 01246899999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
||+.+++.+..+. |..+|.+++|+|+|++|++++.+|+ |++||+. .+ ...++ .++.
T Consensus 210 ~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~-------~~-------------~~~~~-~~~~- 265 (337)
T 1gxr_A 210 WDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVN-------KP-------------DKYQL-HLHE- 265 (337)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------SS-------------CEEEE-CCCS-
T ss_pred EECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCc-EEEEECC-------CC-------------CeEEE-cCCc-
Confidence 9999998887765 7889999999999999999999998 7999986 22 22333 3443
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..|.+++|+||+++|++++.||+|++|++....
T Consensus 266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 459999999999999999999999999997643
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-20 Score=189.35 Aligned_cols=270 Identities=13% Similarity=0.124 Sum_probs=182.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
..+|++|.|+.++|||++++. +.+++. .|.+.|.++.+.|.. .+|+..+
T Consensus 36 ~~~lAvg~D~tV~iWd~~tg~-~~~~~~~~~~~~~V~~v~~~~~~-------------~~l~sgs--------------- 86 (318)
T 4ggc_A 36 GNVLAVALDNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGT--------------- 86 (318)
T ss_dssp TSEEEEEETTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTS-------------SEEEEEE---------------
T ss_pred CCEEEEEeCCEEEEEECCCCC-EEEEEEecCCCCeEEEEEECCCC-------------CEEEEEE---------------
Confidence 358999999999999999855 445543 466778999887653 5555322
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecCcEEEEEeCC-eEEEEeCCCCc-eeEEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSPRIVAVGLAA-QIYCFDALTLE-SKFSVL 235 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~~~LaV~~~~-~I~i~D~~t~e-~~~tl~ 235 (627)
.+++|++||+++++.+++++.+ ..+..+...+++|+++..+ .+.+|+..+.. .+.++.
T Consensus 87 -------------------~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 87 -------------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp -------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred -------------------CCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 2478999999999999999855 4888899889999988654 78999988764 445566
Q ss_pred cCCCCCCCCCCCcCcccccceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+|... ...+++. ++.|+.+..+..+.+|.....+.... ..
T Consensus 148 ~~~~~-------------~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------------~~ 189 (318)
T 4ggc_A 148 GHSQE-------------VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-------------------------PL 189 (318)
T ss_dssp CCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSC-------------------------CS
T ss_pred CccCc-------------eEEEEEcCCCCEEEEEecCcceeEEECCCCccccc-------------------------ce
Confidence 66543 2234443 37888888776665542211000000 00
Q ss_pred cceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEE
Q 046828 314 AGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALC 392 (627)
Q Consensus 314 ~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~la 392 (627)
. ....+.+. ..+. + .|++ ..+. ....+..++.|+|||.......... .|..++..++
T Consensus 190 ~--~~~~~~~~v~~~~--~---~~~~-------------~~~~-~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~ 247 (318)
T 4ggc_A 190 Q--TFTQHQGAVKAVA--W---CPWQ-------------SNVL-ATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL 247 (318)
T ss_dssp E--EECCCCSCEEEEE--E---CTTS-------------TTEE-EEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE
T ss_pred e--eecccCCceEEEE--e---cCCC-------------CcEE-EEEecCCCCEEEEEecccccccccc-cceeeeeeee
Confidence 0 00000000 0000 0 0110 0000 0123567899999999988766544 4677899999
Q ss_pred ECCCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 393 FDRSGTLLVTAS--IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 393 FspdG~lLaTaS--~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|+|++..+++++ .||+ |+|||+. ++ ..+.++ +||+. .|.+|+|+||+++||++|.|
T Consensus 248 ~~~~~~~~~~~sg~~d~~-i~iwd~~-------~~------------~~~~~l-~gH~~-~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 248 WSPHYKELISGHGFAQNQ-LVIWKYP-------TM------------AKVAEL-KGHTS-RVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp EETTTTEEEEEECTTTCC-EEEEETT-------TC------------CEEEEE-CCCSS-CEEEEEECTTSSCEEEEETT
T ss_pred ecccccceEEEEEcCCCE-EEEEECC-------CC------------cEEEEE-cCCCC-CEEEEEEcCCCCEEEEEecC
Confidence 999999998876 7888 8999985 33 256666 68764 69999999999999999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
|+|+||++..
T Consensus 306 ~~v~iWd~~~ 315 (318)
T 4ggc_A 306 ETLRLWRCFE 315 (318)
T ss_dssp TEEEEECCSC
T ss_pred CeEEEEECCC
Confidence 9999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=200.84 Aligned_cols=289 Identities=14% Similarity=0.129 Sum_probs=191.0
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..+.+.|..+.|..... .++.+++.+.++.++|||++..+ .+...+..|.++|..+.+.|.. .
T Consensus 36 ~~h~~~v~~~~~~~~~~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~ 99 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTL---PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-------------S 99 (368)
T ss_dssp SCCSSCEEEEEECCTTS---SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-------------S
T ss_pred cCCCCceEEEEEcCCCC---CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-------------C
Confidence 45678899999974211 13567777778889999999844 3347778899999999988743 4
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEe--cC--cEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRC--SP--RIVA 213 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~--s~--~~La 213 (627)
+|+.+. .+++|++||+++++.+....+...|.++.+ ++ ++|+
T Consensus 100 ~l~s~~----------------------------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 145 (368)
T 3mmy_A 100 KVFTAS----------------------------------CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVM 145 (368)
T ss_dssp EEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEE
T ss_pred EEEEEc----------------------------------CCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEE
Confidence 565432 136799999999999998888899999999 65 5566
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++. ++.|++||+.+++.+.++..+.. ...+...+..++.+..+..+.++...
T Consensus 146 ~~~~dg~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~------------- 198 (368)
T 3mmy_A 146 TGSWDKTLKFWDTRSSNPMMVLQLPER--------------CYCADVIYPMAVVATAERGLIVYQLE------------- 198 (368)
T ss_dssp EEETTSEEEEECSSCSSCSEEEECSSC--------------EEEEEEETTEEEEEEGGGCEEEEECS-------------
T ss_pred EccCCCcEEEEECCCCcEEEEEecCCC--------------ceEEEecCCeeEEEeCCCcEEEEEec-------------
Confidence 665 66899999999998888876432 11233333444444332222211100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceee-cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLIN-LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~-lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
........+.. ..+. ...+ .++ + +..+.... ...+..+|.|+|||
T Consensus 199 ---------------~~~~~~~~~~~~~~~~-~~~~-~~~----~---------~~~~~~~~----~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 199 ---------------NQPSEFRRIESPLKHQ-HRCV-AIF----K---------DKQNKPTG----FALGSIEGRVAIHY 244 (368)
T ss_dssp ---------------SSCEEEEECCCSCSSC-EEEE-EEE----E---------CTTSCEEE----EEEEETTSEEEEEE
T ss_pred ---------------cccchhhhccccccCC-CceE-EEc----c---------cCCCCCCe----EEEecCCCcEEEEe
Confidence 00000000000 0000 0000 000 0 00000000 12456899999999
Q ss_pred CCCC---eEEEEeccCCC------------CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 372 IVSR---SVISQFRAHTS------------PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 372 ~~s~---~~l~~~~aH~~------------~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+... +.+..+..|.. +|.+++|+|+|++|++++.||+ |+|||+. ++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~-------~~----------- 305 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKD-------AR----------- 305 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETT-------TT-----------
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECC-------CC-----------
Confidence 9987 56778888876 7999999999999999999998 8999986 23
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+..+ .++. ..|.+++|+||+++||+++.|+..+.|++-.
T Consensus 306 -~~~~~~-~~~~-~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 306 -TKLKTS-EQLD-QPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp -EEEEEC-CCCS-SCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred -cEEEEe-cCCC-CCceEEEECCCCCeEEEEecccccccccccC
Confidence 245554 4554 4599999999999999999999777666543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-20 Score=196.69 Aligned_cols=268 Identities=15% Similarity=0.178 Sum_probs=180.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEe------------eecCCceEEEEEeeCCCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELV------------SRRDDPVTFLQMQPLPAKSD 127 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ell------------s~~dG~V~~v~~lp~p~~~~ 127 (627)
.+++.|..+.|... ..+.+++.+.++.++|||++.......+. ..|.+.|..+.+.|..
T Consensus 41 ~h~~~v~~~~~s~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 111 (408)
T 4a11_B 41 IHGGGINTLDIEPV-----EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD---- 111 (408)
T ss_dssp CCSSCEEEEEECTT-----TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC----
T ss_pred ccCCcEEEEEEecC-----CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC----
Confidence 47889999999631 23667778888889999999866433332 1378888888887631
Q ss_pred CCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEe
Q 046828 128 GQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRC 207 (627)
Q Consensus 128 ~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~ 207 (627)
..+|+.+. .+++|++||+++++.+..+.+...+..+.+
T Consensus 112 --------~~~l~s~~----------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 149 (408)
T 4a11_B 112 --------TGMFTSSS----------------------------------FDKTLKVWDTNTLQTADVFNFEETVYSHHM 149 (408)
T ss_dssp --------TTCEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred --------CcEEEEEe----------------------------------CCCeEEEeeCCCCccceeccCCCceeeeEe
Confidence 13444322 137799999999999999999999999999
Q ss_pred cC-----cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCC
Q 046828 208 SP-----RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSP 281 (627)
Q Consensus 208 s~-----~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~ 281 (627)
++ .+|+++. ++.|++||+.+++.+..+..|..+ +..+ ++.++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------v~~~-------~~~~~~~~--------- 200 (408)
T 4a11_B 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE-------------ILAV-------SWSPRYDY--------- 200 (408)
T ss_dssp CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC-------------EEEE-------EECSSCTT---------
T ss_pred ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc-------------EEEE-------EECCCCCc---------
Confidence 76 2677665 568999999999988888766443 2223 33332100
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCC
Q 046828 282 QSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDT 361 (627)
Q Consensus 282 q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~ 361 (627)
+ + ..+
T Consensus 201 ------------------------------l-----------------------------------------l----~~~ 205 (408)
T 4a11_B 201 ------------------------------I-----------------------------------------L----ATA 205 (408)
T ss_dssp ------------------------------E-----------------------------------------E----EEE
T ss_pred ------------------------------E-----------------------------------------E----EEE
Confidence 0 0 023
Q ss_pred CCCCeEEEEECCCCe-EEEEe---------------ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCC-C
Q 046828 362 DIAGMVVVKDIVSRS-VISQF---------------RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGR-S 424 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~-~l~~~---------------~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~-~ 424 (627)
..||.|+|||+.+.. .+..+ ..|..+|.+++|+|+|++|++++.||+ |+|||+........ .
T Consensus 206 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNY 284 (408)
T ss_dssp ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCC
T ss_pred cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceecc
Confidence 467889999987764 44444 678999999999999999999999998 89999862110000 0
Q ss_pred CCCc----c-----------------ccC-----CC-CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 425 GSAS----Q-----------------TYD-----WT-SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 425 g~~~----~-----------------~~~-----~~-~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
+... . ..+ |. .....+..+ .++. ..|.+++|+||+++|++++.||+|+||+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KGHY-KTVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CCCS-SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-ccCC-CeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 0000 0 000 00 000123333 4554 4599999999999999999999999999
Q ss_pred cCCCCCee
Q 046828 478 LTPFGGET 485 (627)
Q Consensus 478 i~~~gg~~ 485 (627)
+.......
T Consensus 363 ~~~~~~~~ 370 (408)
T 4a11_B 363 PSLYEPVP 370 (408)
T ss_dssp ECC-----
T ss_pred CCCCCccC
Confidence 98765443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-21 Score=197.35 Aligned_cols=246 Identities=11% Similarity=0.151 Sum_probs=167.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEe-ee-cCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELV-SR-RDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ell-s~-~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
.+.+.|..+.|.. ..+++.+.|+.++|||+.... .....+ .. |.+.|..+.+.|..
T Consensus 12 ~h~~~v~~~~~s~--------~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~------------- 70 (330)
T 2hes_X 12 LYKEKIWSFDFSQ--------GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT------------- 70 (330)
T ss_dssp CCSSCEEEEEEET--------TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-------------
T ss_pred cCCCceeeeccCC--------CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-------------
Confidence 4677888888862 267777888999999998743 223333 23 88899999987643
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC-------CceEEEEe-cCCeEEEEEec
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS-------HNYVHVLR-FRSTVYMVRCS 208 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t-------~~~V~tL~-f~s~V~sV~~s 208 (627)
.+|+... .+++|+|||++. .+.+.+++ +...|.+|+|+
T Consensus 71 ~~las~s----------------------------------~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 116 (330)
T 2hes_X 71 SLLAAGS----------------------------------FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116 (330)
T ss_dssp SEEEEEE----------------------------------TTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC
T ss_pred CEEEEEe----------------------------------CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC
Confidence 5665432 136799999853 45677776 45699999999
Q ss_pred C--cEEEEEe-CCeEEEEeCCCC----ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCC
Q 046828 209 P--RIVAVGL-AAQIYCFDALTL----ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSP 281 (627)
Q Consensus 209 ~--~~LaV~~-~~~I~i~D~~t~----e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~ 281 (627)
+ ++|+++. ++.|+|||+.+. +.+.++.+|..+ +.. +++.++...
T Consensus 117 p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~-------v~~~p~~~~--------- 167 (330)
T 2hes_X 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-------------VKH-------VIWHPSEAL--------- 167 (330)
T ss_dssp TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC-------------EEE-------EEECSSSSE---------
T ss_pred CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc-------------eEE-------EEECCCCCE---------
Confidence 7 6888876 558999999432 344555555432 222 333332100
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCC
Q 046828 282 QSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDT 361 (627)
Q Consensus 282 q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~ 361 (627)
+ +++
T Consensus 168 ------------------------------------------------------------------------l----~s~ 171 (330)
T 2hes_X 168 ------------------------------------------------------------------------L----ASS 171 (330)
T ss_dssp ------------------------------------------------------------------------E----EEE
T ss_pred ------------------------------------------------------------------------E----EEE
Confidence 0 124
Q ss_pred CCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 362 DIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDRS--GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 362 ~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspd--G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
+.||.|+|||+.++ +++..+.+|..+|.+++|+|+ +.+|++++.||+ |+|||+..... .+ ....
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~---~~--------~~~~ 239 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDE---DD--------QQEW 239 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECT---TS--------CEEE
T ss_pred cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCc---cc--------ccee
Confidence 57899999998876 678899999999999999999 789999999998 89999851100 00 0000
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
..+..+ .+.....|++++|++++ +||+++.||+|+||++.
T Consensus 240 ~~~~~~-~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 240 VCEAIL-PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEEEC-CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred EEeeec-ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence 122223 33233469999999765 89999999999999975
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=204.96 Aligned_cols=295 Identities=11% Similarity=0.106 Sum_probs=194.2
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
+.+.|..+.|.. ..+.+++.+.++.++|||.+ ++....+..|.++|..+.+.|.. .+|+
T Consensus 107 ~~~~v~~~~~s~------~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~-------------~~l~ 165 (425)
T 1r5m_A 107 TTNQVTCLAWSH------DGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDG-------------THII 165 (425)
T ss_dssp -CBCEEEEEECT------TSSEEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTS-------------SEEE
T ss_pred CCCceEEEEEcC------CCCEEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCC-------------CEEE
Confidence 455888888864 23567777778889999933 34466677788999999987643 4555
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-e---------------EEE
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-T---------------VYM 204 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~---------------V~s 204 (627)
++. .++.|++||+++++.+..+..+. . |.+
T Consensus 166 ~~~----------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (425)
T 1r5m_A 166 SMD----------------------------------VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211 (425)
T ss_dssp EEE----------------------------------TTCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred EEe----------------------------------cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence 432 12569999999999999998655 3 888
Q ss_pred EEecC-cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccC
Q 046828 205 VRCSP-RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLS 280 (627)
Q Consensus 205 V~~s~-~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~ 280 (627)
+.+++ ..++++ .++.|++||+.+++.+..+..|..+ +..+++.| ++|+.+..+..+.+|....
T Consensus 212 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP-------------ISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC-------------EEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc-------------eEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 88876 445555 5668999999999988888766543 44566654 6888887665554442110
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCccccccc
Q 046828 281 PQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSS 359 (627)
Q Consensus 281 ~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~ 359 (627)
. . ....+. ++.+. ..+. | .|+ +.+ .
T Consensus 279 ~-----------------~------------~~~~~~--~~~~~i~~~~--~---~~~--------------~~l----~ 304 (425)
T 1r5m_A 279 G-----------------N------------SQNCFY--GHSQSIVSAS--W---VGD--------------DKV----I 304 (425)
T ss_dssp B-----------------S------------CSEEEC--CCSSCEEEEE--E---ETT--------------TEE----E
T ss_pred C-----------------c------------cceEec--CCCccEEEEE--E---CCC--------------CEE----E
Confidence 0 0 000000 00000 0000 0 011 111 2
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC-cee
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS-SHV 438 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~-~~~ 438 (627)
.+..+|.|+|||+.+++.+..+..|..+|.+++|+|+|++|++++.+|+ |+|||+.........-.......+.. ...
T Consensus 305 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 305 SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECC
T ss_pred EEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccch
Confidence 3567999999999999999999999999999999999999999999998 89999852100000000000000000 001
Q ss_pred EEEEEeecCCcC-cEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 439 HLYKLHRGMTSA-VIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 439 ~l~~l~rG~t~a-~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+..+ +++... .|.+++|+||+++|++++.||+|+||+++
T Consensus 384 ~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 384 LYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 33333 566543 69999999999999999999999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-21 Score=198.40 Aligned_cols=250 Identities=14% Similarity=0.126 Sum_probs=173.8
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..+.+.|..+.|.. ..+.+++.+.|+.++|||++... +....+..|.+.|..+.+.|.. .
T Consensus 58 ~~h~~~v~~~~~sp------~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-------------~ 118 (345)
T 3fm0_A 58 EGHQRTVRKVAWSP------CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-------------N 118 (345)
T ss_dssp SSCSSCEEEEEECT------TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred cccCCcEEEEEECC------CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-------------C
Confidence 45677888899963 23678888899999999998754 2344566788999999987643 5
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce---EEEEe-cCCeEEEEEecC--cE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY---VHVLR-FRSTVYMVRCSP--RI 211 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~---V~tL~-f~s~V~sV~~s~--~~ 211 (627)
+|+... .+++|++||+++++. +..+. +...|.++.+++ ++
T Consensus 119 ~l~s~s----------------------------------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 119 LLATCS----------------------------------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEE----------------------------------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEE----------------------------------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 665432 136799999988753 45555 456899999987 67
Q ss_pred EEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCC
Q 046828 212 VAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTP 286 (627)
Q Consensus 212 LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~ 286 (627)
|+++. ++.|++||+.+.+ ...++.+|..+ +..++++| ++||.++
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~-------------v~~l~~sp~g~~l~s~s------------------ 213 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHEST-------------VWSLAFDPSGQRLASCS------------------ 213 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECTTSSEEEEEE------------------
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCc-------------eEEEEECCCCCEEEEEe------------------
Confidence 77776 5589999998875 34566666443 33445543 3444444
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe
Q 046828 287 PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 287 ~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~ 366 (627)
.||+
T Consensus 214 ----------------------------------------------------------------------------~D~~ 217 (345)
T 3fm0_A 214 ----------------------------------------------------------------------------DDRT 217 (345)
T ss_dssp ----------------------------------------------------------------------------TTSC
T ss_pred ----------------------------------------------------------------------------CCCe
Confidence 4455
Q ss_pred EEEEECCC---------------CeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 367 VVVKDIVS---------------RSVISQFRA-HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 367 V~IwD~~s---------------~~~l~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
|+|||... .+++..+.. |...|.+++|+|++.+||+++.|++ |+||+..+....
T Consensus 218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~--------- 287 (345)
T 3fm0_A 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDP--------- 287 (345)
T ss_dssp EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSCT---------
T ss_pred EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCCc---------
Confidence 55555311 134556665 8899999999999999999999998 899998632100
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~ 481 (627)
..........+.++|.. .|.+|+|+|++ .+||+++.||+|+||++...
T Consensus 288 --~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 288 --QQPTFSLTAHLHQAHSQ-DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp --TSCCEEEEEEETTSSSS-CEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred --ceeeEEEEeeecccccC-cEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 00011122333456653 59999999998 59999999999999999754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-21 Score=201.15 Aligned_cols=251 Identities=11% Similarity=0.094 Sum_probs=181.2
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-----CceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-----NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-----~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
..+++.|..+.|+. +.+++.+.++.++|||++... .....+..|.++|.++.+.|...
T Consensus 13 ~~h~~~i~~~~~~~--------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------- 75 (397)
T 1sq9_A 13 KAHDADIFSVSACN--------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE--------- 75 (397)
T ss_dssp SCSSSCEEEEEECS--------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE---------
T ss_pred hhhhcCeEEEEecC--------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccc---------
Confidence 45788999999952 577778888899999999865 13455557889999999987510
Q ss_pred CCC---CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce-----EEEEecC------
Q 046828 134 NSH---PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-----VHVLRFR------ 199 (627)
Q Consensus 134 ~~r---pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-----V~tL~f~------ 199 (627)
... .+|+... .+++|++||+.+++. +..+..+
T Consensus 76 ~~g~~~~~l~s~~----------------------------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 1sq9_A 76 RDAFELCLVATTS----------------------------------FSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 121 (397)
T ss_dssp TTTEEEEEEEEEE----------------------------------TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGG
T ss_pred cCCccccEEEEEc----------------------------------CCCCEEEEEccCCcccccccceeecccccccCC
Confidence 001 2444322 126699999999997 8888755
Q ss_pred CeEEEEEec----C--cE-EEEEe-CCeEEEEeCCC------CceeE-----EEEc-------CCCCCCCCCCCcCcccc
Q 046828 200 STVYMVRCS----P--RI-VAVGL-AAQIYCFDALT------LESKF-----SVLT-------YPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 200 s~V~sV~~s----~--~~-LaV~~-~~~I~i~D~~t------~e~~~-----tl~~-------~p~~~~~~~g~~~~~~~ 253 (627)
..|.+++++ + ++ |+++. ++.|++||+.+ ++.+. ++.+ +..+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 188 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF------------- 188 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC-------------
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC-------------
Confidence 799999999 5 66 77765 56899999988 55443 3322 1100
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+ ..+++.++. .
T Consensus 189 i-------~~~~~~~~~-~------------------------------------------------------------- 199 (397)
T 1sq9_A 189 A-------TSVDISERG-L------------------------------------------------------------- 199 (397)
T ss_dssp C-------CEEEECTTS-E-------------------------------------------------------------
T ss_pred c-------eEEEECCCc-e-------------------------------------------------------------
Confidence 1 112222110 0
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc---C---CCCeEEEEECCCCCEEEEEeCC-
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA---H---TSPISALCFDRSGTLLVTASIH- 406 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a---H---~~~Is~laFspdG~lLaTaS~d- 406 (627)
+ ..+..+|.|+|||+.+++.+..+.. | ..+|.+++|+|+|++|++++.+
T Consensus 200 --------------------l----~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~ 255 (397)
T 1sq9_A 200 --------------------I----ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 255 (397)
T ss_dssp --------------------E----EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred --------------------E----EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC
Confidence 0 1245789999999999999999999 9 9999999999999999999999
Q ss_pred --CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec-------------CCcCcEEEEEEccCCCEEEEEeCCC
Q 046828 407 --GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG-------------MTSAVIQDICFSHYSQWIAIVSSRG 471 (627)
Q Consensus 407 --Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG-------------~t~a~I~sIaFSpDg~~Las~S~dg 471 (627)
|+ |+|||+. ++. .+..+ .+ +. ..|.+++|+||+++|++++.||
T Consensus 256 ~~g~-i~i~d~~-------~~~------------~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 256 SFGC-ITLYETE-------FGE------------RIGSL-SVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp TEEE-EEEEETT-------TCC------------EEEEE-CBC--------CCBSBS-SCEEEEEECSSSSEEEEEETTS
T ss_pred CCce-EEEEECC-------CCc------------cccee-ccCcccccccccccccC-CcEEEEEECCCCCEEEEEeCCC
Confidence 87 8999986 221 44444 34 33 4599999999999999999999
Q ss_pred eEEEEEcCCCCCeeecc
Q 046828 472 TCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 472 TvhIw~i~~~gg~~~~~ 488 (627)
+|+||++........+.
T Consensus 314 ~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEEcCCCceeEEEe
Confidence 99999998754444444
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-20 Score=191.48 Aligned_cols=185 Identities=15% Similarity=0.187 Sum_probs=144.6
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
++|++||+.+++.+.++. +...|.++++++ ++|+++. ++.|++||+.+++.+.++.+|..+ +.
T Consensus 45 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~ 111 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-------------VF 111 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EE
T ss_pred CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC-------------EE
Confidence 669999999999999997 455999999997 6777775 568999999999999888877543 22
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
. +++.++... +
T Consensus 112 ~-------~~~~~~~~~---------------------------------------l----------------------- 122 (312)
T 4ery_A 112 C-------CNFNPQSNL---------------------------------------I----------------------- 122 (312)
T ss_dssp E-------EEECSSSSE---------------------------------------E-----------------------
T ss_pred E-------EEEcCCCCE---------------------------------------E-----------------------
Confidence 2 333321100 0
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
..++.||.|+|||+.+++.+..+..|..+|.+++|+|+|++|++++.||+ |+|||+
T Consensus 123 -----------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~ 178 (312)
T 4ery_A 123 -----------------------VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDT 178 (312)
T ss_dssp -----------------------EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEET
T ss_pred -----------------------EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEEC
Confidence 02347899999999999999999999999999999999999999999998 899998
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
. ++ ..+..+...+ ...|..++|+||+++|++++.||+|+||++........+..|
T Consensus 179 ~-------~~------------~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 233 (312)
T 4ery_A 179 A-------SG------------QCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233 (312)
T ss_dssp T-------TC------------CEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred C-------CC------------ceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence 6 23 1444443333 345999999999999999999999999999765433344444
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-21 Score=203.49 Aligned_cols=252 Identities=14% Similarity=0.143 Sum_probs=173.7
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.+++.+.++.++|||++. +.....+..|.+.|..+.+.|.. .+|+...
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~s~s---------------- 158 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSG-------------EALISSS---------------- 158 (420)
T ss_dssp SCEEEEEETTSCEEEECTTS-CEEEEETTSSSSCEEEEEECTTS-------------SEEEEEE----------------
T ss_pred CCEEEEEECCCCEEEEeCCC-cceeeecccccCccEEEEECCCC-------------CEEEEEe----------------
Confidence 36677778888999999986 44556667789999999987643 4555432
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~ 235 (627)
.+++|++||+++++.+.+++ +...|.++++++ ++|+++. ++.|++||+.+++.+.++.
T Consensus 159 ------------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 220 (420)
T 3vl1_A 159 ------------------QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220 (420)
T ss_dssp ------------------TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ------------------CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence 13779999999999999998 566999999987 6777765 5679999999999988887
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
.+..+. ..+.. +++.+........ ....+..+
T Consensus 221 ~~~~~~----------~~v~~-------~~~~~~~~~~~~~------~~~~~v~~------------------------- 252 (420)
T 3vl1_A 221 RKENPH----------DGVNS-------IALFVGTDRQLHE------ISTSKKNN------------------------- 252 (420)
T ss_dssp BTTBTT----------CCEEE-------EEEEECCCSSCGG------GCCCCCCT-------------------------
T ss_pred cCCCCC----------CCccE-------EEEecCCcceeee------cccCcccc-------------------------
Confidence 654321 00222 2222211100000 00000000
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEEC
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFD 394 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFs 394 (627)
..++++ |.. ...+..+|.|+|||+.+++.+..+. .|..+|.+++|+
T Consensus 253 -------------------------~~~s~~-----~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 299 (420)
T 3vl1_A 253 -------------------------LEFGTY-----GKY---VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD 299 (420)
T ss_dssp -------------------------TCSSCT-----TEE---EEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC
T ss_pred -------------------------eEEcCC-----CCE---EEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEe
Confidence 000111 110 0135679999999999998877775 588999999999
Q ss_pred CCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeE
Q 046828 395 RSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473 (627)
Q Consensus 395 pdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTv 473 (627)
|+|. +|++++.||+ |+|||+. ++. ..+..+ .++....|.++.| +|+++|++++.||+|
T Consensus 300 ~~~~~~l~~g~~dg~-i~vwd~~-------~~~-----------~~~~~~-~~~~~~~v~~~~~-~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 300 GNNANYIYAGYENGM-LAQWDLR-------SPE-----------CPVGEF-LINEGTPINNVYF-AAGALFVSSGFDTSI 358 (420)
T ss_dssp SSCTTEEEEEETTSE-EEEEETT-------CTT-----------SCSEEE-EESTTSCEEEEEE-ETTEEEEEETTTEEE
T ss_pred CCCCCEEEEEeCCCe-EEEEEcC-------CCc-----------Cchhhh-hccCCCCceEEEe-CCCCEEEEecCCccE
Confidence 9999 9999999997 8999986 221 123333 3434456888855 688999999999999
Q ss_pred EEEEcCCC
Q 046828 474 HIFVLTPF 481 (627)
Q Consensus 474 hIw~i~~~ 481 (627)
+||++...
T Consensus 359 ~iw~~~~~ 366 (420)
T 3vl1_A 359 KLDIISDP 366 (420)
T ss_dssp EEEEECCT
T ss_pred EEEeccCC
Confidence 99999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=201.55 Aligned_cols=271 Identities=10% Similarity=0.065 Sum_probs=186.9
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
..+++++.++.++|||++.......+...|.+.|..+.+.|.. .+|++..
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-------------~~l~~~~----------------- 153 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-------------SFLSVGL----------------- 153 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-------------SEEEEEE-----------------
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-------------CEEEEEC-----------------
Confidence 5689999999999999998654333333478899999987642 5665432
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe-CCeEEEEeCCC-CceeEEEEcC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL-AAQIYCFDALT-LESKFSVLTY 237 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t-~e~~~tl~~~ 237 (627)
.++.|++||+.+++.+.++. +...|.++.+++++|+++. ++.|++||+.+ .+....+.+|
T Consensus 154 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 154 -----------------GNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp -----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred -----------------CCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 12569999999999999997 5569999999998888876 55899999994 5556677776
Q ss_pred CCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 238 PVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 238 p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
..+ +..+++.| ++||.++.+..+.+|..... +.+ ..
T Consensus 217 ~~~-------------v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----------------------------~~~-~~ 254 (401)
T 4aez_A 217 SSE-------------VCGLAWRSDGLQLASGGNDNVVQIWDARSS----------------------------IPK-FT 254 (401)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTCS----------------------------SEE-EE
T ss_pred CCC-------------eeEEEEcCCCCEEEEEeCCCeEEEccCCCC----------------------------Ccc-EE
Confidence 543 44566654 68999887766554422100 000 00
Q ss_pred eeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEEC
Q 046828 316 LINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFD 394 (627)
Q Consensus 316 l~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFs 394 (627)
+ .++.+. ..+. | .|++ ..+.. ...+..||.|++||+.+++.+..+. |..+|.+++|+
T Consensus 255 ~--~~~~~~v~~~~--~---~p~~-------------~~ll~-~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s 312 (401)
T 4aez_A 255 K--TNHNAAVKAVA--W---CPWQ-------------SNLLA-TGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWS 312 (401)
T ss_dssp E--CCCSSCCCEEE--E---CTTS-------------TTEEE-EECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEC
T ss_pred e--cCCcceEEEEE--E---CCCC-------------CCEEE-EecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEEC
Confidence 0 000000 0000 0 0111 01110 0013479999999999999988886 66789999999
Q ss_pred CCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 395 RSGTLLVTAS--IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 395 pdG~lLaTaS--~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
|+|.+|++++ .+|+ |+|||+. ++. ...+.++ .++. ..|.+++|+||+++|++++.||+
T Consensus 313 ~~~~~l~~~~g~~dg~-i~v~~~~-------~~~----------~~~~~~~-~~h~-~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNN-LSIWSYS-------SSG----------LTKQVDI-PAHD-TRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp SSSSEEEEEECTTTCE-EEEEEEE-------TTE----------EEEEEEE-ECCS-SCCCEEEECTTSSEEEEECTTSE
T ss_pred CCCCeEEEEeecCCCc-EEEEecC-------Ccc----------ceeEEEe-cCCC-CCEEEEEECCCCCEEEEEeCCCc
Confidence 9999999965 8887 8999985 221 1233334 4554 45999999999999999999999
Q ss_pred EEEEEcCCCC
Q 046828 473 CHIFVLTPFG 482 (627)
Q Consensus 473 vhIw~i~~~g 482 (627)
|+||++....
T Consensus 373 i~iw~~~~~~ 382 (401)
T 4aez_A 373 LKFWRVYDGD 382 (401)
T ss_dssp EEEEECCC--
T ss_pred EEEEECCCCc
Confidence 9999997643
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-21 Score=203.17 Aligned_cols=235 Identities=10% Similarity=0.083 Sum_probs=166.2
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.++..++++.+++||+...... ..+..+ ..+.+..+.|.. .+|++..
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~-~~~~~~~~~~~~-------------~~l~~~~---------------- 116 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDGS-KMLKRA-DYTAVDTAKLQM-------------RRFILGT---------------- 116 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEETT-TTSCSC-CEEEEEEECSSS-------------CEEEEEE----------------
T ss_pred CCeEEEEEcCCcEEEEEeccccee-eEEecC-CceEEEEEecCC-------------CEEEEEE----------------
Confidence 367888999999999999874422 222222 222333333321 4555432
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~ 235 (627)
.+++|++||+++++.+..+. +...|.++++++ ++|+++. ++.|++||+.+++.+.++.
T Consensus 117 ------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 178 (420)
T 3vl1_A 117 ------------------TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI 178 (420)
T ss_dssp ------------------TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred ------------------CCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence 12569999999999988875 667999999987 6777776 5689999999999998888
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|..+ +..++ +.++... +
T Consensus 179 ~h~~~-------------v~~~~-------~~~~~~~---------------------------------------l--- 196 (420)
T 3vl1_A 179 GHRAT-------------VTDIA-------IIDRGRN---------------------------------------V--- 196 (420)
T ss_dssp CCSSC-------------EEEEE-------EETTTTE---------------------------------------E---
T ss_pred CCCCc-------------EEEEE-------EcCCCCE---------------------------------------E---
Confidence 77543 22233 3322100 0
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC---C-------
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH---T------- 385 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH---~------- 385 (627)
..++.||.|+|||+.+++.+..+..| .
T Consensus 197 -------------------------------------------~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 233 (420)
T 3vl1_A 197 -------------------------------------------LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233 (420)
T ss_dssp -------------------------------------------EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEE
T ss_pred -------------------------------------------EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEE
Confidence 02346889999999999998888753 3
Q ss_pred --------------CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 386 --------------SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 386 --------------~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
.+|.+++|+|+|++|++++.||+ |+|||+. ++ ..+.++..++. ..
T Consensus 234 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~-------~~------------~~~~~~~~~~~-~~ 292 (420)
T 3vl1_A 234 LFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVF-------SK------------EQTIQLPSKFT-CS 292 (420)
T ss_dssp EEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETT-------TC------------CEEEEECCTTS-SC
T ss_pred EecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECC-------CC------------ceeEEcccccC-CC
Confidence 44555556899999999999998 8999986 23 25566655554 46
Q ss_pred EEEEEEccCCC-EEEEEeCCCeEEEEEcCCCCC-eeeccc
Q 046828 452 IQDICFSHYSQ-WIAIVSSRGTCHIFVLTPFGG-ETVLQI 489 (627)
Q Consensus 452 I~sIaFSpDg~-~Las~S~dgTvhIw~i~~~gg-~~~~~~ 489 (627)
|.+++|+||++ +|++++.||+|+||++..... ...+..
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI 332 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc
Confidence 99999999999 999999999999999986543 333444
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-20 Score=186.04 Aligned_cols=237 Identities=13% Similarity=0.129 Sum_probs=173.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.+.|..+.|.. ..+.+++.+.++.+++||++.... ....+..|.+.|..+.+.|.. .+
T Consensus 95 ~~~~~v~~~~~~~------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~ 155 (337)
T 1gxr_A 95 NRDNYIRSCKLLP------DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-------------KV 155 (337)
T ss_dssp CTTSBEEEEEECT------TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-------------SE
T ss_pred CCCCcEEEEEEcC------CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-------------CE
Confidence 4567788888864 235677777788899999998552 234455677888888887642 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG 215 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~ 215 (627)
|++.. .++.|++||+++++.+.+++ +...|.++.+++ ++|+++
T Consensus 156 l~~~~----------------------------------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 156 CFSCC----------------------------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEe----------------------------------CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence 55432 12569999999999999998 566999999987 577776
Q ss_pred e-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 216 L-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 216 ~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
. ++.|++||+.+++.+..+. ++.+ .. -+++.++...
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~-~~~~-------------v~-------~~~~s~~~~~---------------------- 238 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHD-FTSQ-------------IF-------SLGYCPTGEW---------------------- 238 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CSSC-------------EE-------EEEECTTSSE----------------------
T ss_pred ecCCcEEEEECCCCceEeeec-CCCc-------------eE-------EEEECCCCCE----------------------
Confidence 5 6689999999998776653 2221 11 2333322100
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+ ..+..+|.|++||+.+
T Consensus 239 -----------------l----------------------------------------------~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 239 -----------------L----------------------------------------------AVGMESSNVEVLHVNK 255 (337)
T ss_dssp -----------------E----------------------------------------------EEEETTSCEEEEETTS
T ss_pred -----------------E----------------------------------------------EEEcCCCcEEEEECCC
Confidence 0 0123578999999998
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 375 RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
.+. ..+..|..+|.+++|+|+|++|++++.+|+ |+|||+. ++. .+... .+ ...|.+
T Consensus 256 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~-------~~~------------~~~~~--~~-~~~v~~ 311 (337)
T 1gxr_A 256 PDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTP-------YGA------------SIFQS--KE-SSSVLS 311 (337)
T ss_dssp SCE-EEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-------TCC------------EEEEE--EC-SSCEEE
T ss_pred CCe-EEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECC-------CCe------------EEEEe--cC-CCcEEE
Confidence 865 478899999999999999999999999997 8999986 231 33322 22 346999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
++|+||+++|++++.||+|+||++-
T Consensus 312 ~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 312 CDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999999999999999973
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-20 Score=201.71 Aligned_cols=232 Identities=15% Similarity=0.214 Sum_probs=176.0
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.++.+.|..+.||. +.+++++.++.++|||+.+.. ....+..|.+.|.++.+ .. .+
T Consensus 130 ~~~~~~v~~~~~d~--------~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~--~~-------------~~ 185 (435)
T 1p22_A 130 SETSKGVYCLQYDD--------QKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--DE-------------RV 185 (435)
T ss_dssp CSSCCCEEEEECCS--------SEEEEEESSSCEEEEESSSCC-EEEEECCCSSCEEEEEC--CS-------------SE
T ss_pred cCCCCcEEEEEECC--------CEEEEEeCCCeEEEEeCCCCe-EEEEEcCCCCcEEEEEE--CC-------------CE
Confidence 34556788888852 678888889999999998755 45566678899888776 21 35
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecCcEEEEEe-
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSPRIVAVGL- 216 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~~~LaV~~- 216 (627)
|++.. .+++|++||+++++.+.++.. ...|.++.+++..|+++.
T Consensus 186 l~sg~----------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 231 (435)
T 1p22_A 186 IITGS----------------------------------SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231 (435)
T ss_dssp EEEEE----------------------------------TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred EEEEc----------------------------------CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence 54322 136799999999999999984 559999999998888876
Q ss_pred CCeEEEEeCCCCcee---EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESK---FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~---~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
++.|++||+.+++.. ..+.+|..+ +..+++.+++|+.
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~s--------------------------- 271 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKYIVS--------------------------- 271 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSC-------------EEEEEEETTEEEE---------------------------
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCc-------------EEEEEeCCCEEEE---------------------------
Confidence 558999999988765 333344322 2223322222222
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
++.||.|+|||+.
T Consensus 272 -------------------------------------------------------------------~~~dg~i~vwd~~ 284 (435)
T 1p22_A 272 -------------------------------------------------------------------ASGDRTIKVWNTS 284 (435)
T ss_dssp -------------------------------------------------------------------EETTSEEEEEETT
T ss_pred -------------------------------------------------------------------EeCCCeEEEEECC
Confidence 3468999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEE
Q 046828 374 SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453 (627)
Q Consensus 374 s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~ 453 (627)
+++.+..+.+|..+|.+++| ++.+|++++.||+ |+|||+. ++. .+..+ +++. ..|.
T Consensus 285 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~-------~~~------------~~~~~-~~h~-~~v~ 340 (435)
T 1p22_A 285 TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIE-------CGA------------CLRVL-EGHE-ELVR 340 (435)
T ss_dssp TCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETT-------TCC------------EEEEE-CCCS-SCEE
T ss_pred cCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECC-------CCC------------EEEEE-eCCc-CcEE
Confidence 99999999999999999999 5789999999998 8999986 332 45555 5654 3599
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+++| |+++|++++.||+|+||++...
T Consensus 341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 341 CIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred EEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 9999 8999999999999999998653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-21 Score=198.90 Aligned_cols=249 Identities=13% Similarity=0.140 Sum_probs=179.2
Q ss_pred CCCCcEEEEEeeccCCCCCCC---CeEEEEeccCcEEEEecCCCCCc----eEEeeec-----CCceEEEEEeeCCCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSF---KHVLLLGYSNGFQVLDVEDATNV----SELVSRR-----DDPVTFLQMQPLPAKSD 127 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~---~~vl~~Gy~~G~qVWdv~~~~~~----~ells~~-----dG~V~~v~~lp~p~~~~ 127 (627)
.+.+.|..+.|.... .... +.+++.+.++.++|||++..... ...+..| ++.|..+.+.+.+..
T Consensus 60 ~h~~~v~~~~~~~~~--~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 135 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAI--ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-- 135 (397)
T ss_dssp CCTTCEEEEEEEEEE--ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred cCCCcEEEEEEeccc--ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC--
Confidence 466778888886420 0113 56777788889999999986530 3444455 588999999843210
Q ss_pred CCCCcCCCCCE-EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC------CceEE-----E
Q 046828 128 GQEGFRNSHPL-LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS------HNYVH-----V 195 (627)
Q Consensus 128 ~~D~f~~~rpL-lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t------~~~V~-----t 195 (627)
| ..+ |++.. .++.|++||+++ ++.+. +
T Consensus 136 --~-----~~~~l~~~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (397)
T 1sq9_A 136 --L-----LSHRLVATD----------------------------------VKGTTYIWKFHPFADESNSLTLNWSPTLE 174 (397)
T ss_dssp ---------CEEEEEEE----------------------------------TTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred --C-----CceEEEEEe----------------------------------CCCcEEEEeCCccccccccceeeccCcce
Confidence 1 155 54432 125699999999 77776 7
Q ss_pred Ee--------cCCeEEEEEecCc-EEEEEe-CCeEEEEeCCCCceeEEEEc---C---CCCCCCCCCCcCcccccceeeE
Q 046828 196 LR--------FRSTVYMVRCSPR-IVAVGL-AAQIYCFDALTLESKFSVLT---Y---PVPHFGGQGTSGVNIGYGPMAV 259 (627)
Q Consensus 196 L~--------f~s~V~sV~~s~~-~LaV~~-~~~I~i~D~~t~e~~~tl~~---~---p~~~~~~~g~~~~~~~~~~iAl 259 (627)
+. +...|.++++++. +|+++. ++.|++||+.+++.+..+.. | ..+ +..+++
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~-------------i~~i~~ 241 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS-------------IRSVKF 241 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC-------------EEEEEE
T ss_pred eeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc-------------cceEEE
Confidence 75 3568999999874 777775 56899999999998888877 5 322 222333
Q ss_pred cC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCC
Q 046828 260 GP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPD 337 (627)
Q Consensus 260 ~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~ 337 (627)
+| ++|+.
T Consensus 242 ~~~~~~l~~----------------------------------------------------------------------- 250 (397)
T 1sq9_A 242 SPQGSLLAI----------------------------------------------------------------------- 250 (397)
T ss_dssp CSSTTEEEE-----------------------------------------------------------------------
T ss_pred CCCCCEEEE-----------------------------------------------------------------------
Confidence 22 11211
Q ss_pred CCCCCccCCCccccCcccccccCCCCC---CeEEEEECCCCeEEEEecc-------------CCCCeEEEEECCCCCEEE
Q 046828 338 GSSSPVSSNSSWKAGRNASHSSDTDIA---GMVVVKDIVSRSVISQFRA-------------HTSPISALCFDRSGTLLV 401 (627)
Q Consensus 338 g~~~~~s~~~~~~~g~~~~~~~~~~~d---G~V~IwD~~s~~~l~~~~a-------------H~~~Is~laFspdG~lLa 401 (627)
+..+ |.|+|||+.+++.+..+.. |..+|.+++|+|+|.+|+
T Consensus 251 -----------------------~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 251 -----------------------AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp -----------------------EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred -----------------------EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 2245 8999999999999999999 999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee-----cC--------------CcCcEEEEEEccCC-
Q 046828 402 TASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR-----GM--------------TSAVIQDICFSHYS- 461 (627)
Q Consensus 402 TaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r-----G~--------------t~a~I~sIaFSpDg- 461 (627)
+++.||+ |+|||+. ++ ..+..+.. ++ ....|.+++|+||+
T Consensus 308 ~~~~dg~-i~iwd~~-------~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 308 SAGWDGK-LRFWDVK-------TK------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp EEETTSE-EEEEETT-------TT------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred EEeCCCe-EEEEEcC-------CC------------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 9999997 8999986 23 24444431 33 03469999999999
Q ss_pred ---------CEEEEEeCCCeEEEEEcCC
Q 046828 462 ---------QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 462 ---------~~Las~S~dgTvhIw~i~~ 480 (627)
++|++++.||+|+||++..
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccccceEEEecCCCcEEEEEcCC
Confidence 7999999999999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=206.89 Aligned_cols=261 Identities=11% Similarity=0.059 Sum_probs=172.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEec------cCcEEEEecCCCCCce---EEeeecCCceEEEEEeeCCCCCCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGY------SNGFQVLDVEDATNVS---ELVSRRDDPVTFLQMQPLPAKSDGQE 130 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy------~~G~qVWdv~~~~~~~---ells~~dG~V~~v~~lp~p~~~~~~D 130 (627)
.+...|..+.|.. +++.++..+. ++.+++|+........ .....|++.|..+.+.|.-
T Consensus 40 ~H~~~V~~v~fSp------DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~------- 106 (357)
T 4g56_B 40 CMEVQIGAVRYRR------DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK------- 106 (357)
T ss_dssp CCCSEEEEEEECS------SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-------
T ss_pred cccCCEEEEEECC------CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-------
Confidence 3667888999953 2356666664 4568888887644222 2233577889999988642
Q ss_pred CcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-----cCCeEEEE
Q 046828 131 GFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-----FRSTVYMV 205 (627)
Q Consensus 131 ~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-----f~s~V~sV 205 (627)
.+| +.+ .+++|+|||+++++.+...+ +...|.+|
T Consensus 107 ------~~l-~~s----------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v 145 (357)
T 4g56_B 107 ------GIL-VAS----------------------------------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTL 145 (357)
T ss_dssp ------EEE-EEE----------------------------------TTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred ------CEE-EEE----------------------------------CCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence 233 322 12569999999988654332 45699999
Q ss_pred EecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCC
Q 046828 206 RCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQ 282 (627)
Q Consensus 206 ~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q 282 (627)
+|++ ++|+++. ++.|++||+.+++.+..+.+|..+ +. -+++..+...
T Consensus 146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-------------v~-------~v~~s~~~~~---------- 195 (357)
T 4g56_B 146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-------------VN-------CVAACPGKDT---------- 195 (357)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EE-------EEEECTTCSS----------
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EE-------EEEEccCCCc----------
Confidence 9997 6788775 558999999999998888776543 22 2444432100
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCC
Q 046828 283 SLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTD 362 (627)
Q Consensus 283 ~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~ 362 (627)
+ + ..+.
T Consensus 196 -----------------~-----------------------------------------------------~----~s~~ 201 (357)
T 4g56_B 196 -----------------I-----------------------------------------------------F----LSCG 201 (357)
T ss_dssp -----------------C-----------------------------------------------------E----EEEE
T ss_pred -----------------e-----------------------------------------------------e----eeec
Confidence 0 0 0234
Q ss_pred CCCeEEEEECCCCeEEEEec--cCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 363 IAGMVVVKDIVSRSVISQFR--AHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.||.|+|||+.+++.+..+. .|...|.+|+|+|+ +.+||+++.||+ |+|||+. ++. .
T Consensus 202 ~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~-------~~~------------~ 261 (357)
T 4g56_B 202 EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIK-------NPD------------S 261 (357)
T ss_dssp TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESS-------CGG------------G
T ss_pred cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECC-------CCc------------E
Confidence 78999999999988766554 56788999999997 578999999998 8999986 221 2
Q ss_pred EEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
+..+ +++.. .|.+|+|+||+ ++||+++.||+|+||+++.. .......|...+....+.|
T Consensus 262 ~~~~-~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~~~~~~~H~~~V~~vafsP 321 (357)
T 4g56_B 262 AQTS-AVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFS-EVFRDLSHRDFVTGVAWSP 321 (357)
T ss_dssp CEEE-CCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSC-EEEEECCCSSCEEEEEECS
T ss_pred eEEE-eccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-cEeEECCCCCCEEEEEEeC
Confidence 3333 56543 59999999987 68999999999999999753 3334456765554433333
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=203.46 Aligned_cols=254 Identities=9% Similarity=0.070 Sum_probs=179.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCC---CCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVED---ATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~---~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
.+.+.|..+.|.. ..+.+++.+.++.++|||+.. .......+..|.+.|..+.+.|.. .
T Consensus 65 ~~~~~v~~~~~s~------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~ 126 (416)
T 2pm9_A 65 QVDSKFNDLDWSH------NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ------------D 126 (416)
T ss_dssp CCSSCEEEEEECS------SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS------------T
T ss_pred ecCCceEEEEECC------CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC------------C
Confidence 4567888899853 235677777888999999997 233456666788999999987651 1
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc------eEEEE----ecCCeEEEEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN------YVHVL----RFRSTVYMVR 206 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~------~V~tL----~f~s~V~sV~ 206 (627)
.+|+... .+++|++||+++++ ....+ .+...|.+++
T Consensus 127 ~~l~s~~----------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 127 NVLASGG----------------------------------NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp TBEEEEC----------------------------------SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred CEEEEEc----------------------------------CCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 4554321 12669999999987 44333 2556999999
Q ss_pred ecC---cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCC
Q 046828 207 CSP---RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQ 282 (627)
Q Consensus 207 ~s~---~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q 282 (627)
+++ ++|+++. ++.|++||+.+++.+..+..+.... +. ...+ ..+++.++...
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~---~~~v-------~~~~~~~~~~~---------- 228 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS----GI---KQQL-------SVVEWHPKNST---------- 228 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS----CC---CCCE-------EEEEECSSCTT----------
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc----cc---CCce-------EEEEECCCCCC----------
Confidence 986 4777765 5689999999998887776542110 00 0001 22333332100
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCC
Q 046828 283 SLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTD 362 (627)
Q Consensus 283 ~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~ 362 (627)
+ + ..+.
T Consensus 229 -----------------~-----------l----------------------------------------------~~~~ 234 (416)
T 2pm9_A 229 -----------------R-----------V----------------------------------------------ATAT 234 (416)
T ss_dssp -----------------E-----------E----------------------------------------------EEEE
T ss_pred -----------------E-----------E----------------------------------------------EEEE
Confidence 0 0 0112
Q ss_pred CCC---eEEEEECCCC-eEEEEec-cCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 363 IAG---MVVVKDIVSR-SVISQFR-AHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 363 ~dG---~V~IwD~~s~-~~l~~~~-aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.+| .|++||+.++ +.+..+. +|..+|.+++|+| +|.+|++++.||+ |+|||+. ++
T Consensus 235 ~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~-------~~----------- 295 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPE-------SA----------- 295 (416)
T ss_dssp CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSS-------SC-----------
T ss_pred CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCC-------CC-----------
Confidence 344 9999999986 6777888 9999999999999 9999999999998 8999986 23
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCCCCee
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
..+..+ .++. ..|.+++|+||+ ++|++++.||+|+||++.......
T Consensus 296 -~~~~~~-~~~~-~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 296 -EQLSQF-PARG-NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp -CEEEEE-ECSS-SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred -ccceee-cCCC-CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 245555 4554 359999999999 899999999999999998765433
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-20 Score=186.14 Aligned_cols=262 Identities=10% Similarity=0.062 Sum_probs=174.6
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCc----eEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNV----SELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~----~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.|.+.|..+.|.. ...+.++..|.|+.++|||+...... ...+..|.+.|..+.+.|..
T Consensus 36 GH~~~V~~v~~sp-----~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg------------ 98 (340)
T 4aow_A 36 GHNGWVTQIATTP-----QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG------------ 98 (340)
T ss_dssp CCSSCEEEEEECT-----TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS------------
T ss_pred CccCCEEEEEEeC-----CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC------------
Confidence 5788899999952 12356778899999999999875421 23455678899999887642
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIV 212 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~L 212 (627)
.+|+... .++.|++|+............. ..+..+.+++ +.|
T Consensus 99 -~~l~s~~----------------------------------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 143 (340)
T 4aow_A 99 -QFALSGS----------------------------------WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143 (340)
T ss_dssp -SEEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE
T ss_pred -CEEEEEc----------------------------------ccccceEEeecccceeeeecCCCCceeEEEEeecCccc
Confidence 4555422 1367999999999988887754 4777777765 666
Q ss_pred EEEe-CCeEEEEeCCCCceeEEE-EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 213 AVGL-AAQIYCFDALTLESKFSV-LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~e~~~tl-~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
+++. ++.+++||+......... ..|... . ..+++......
T Consensus 144 ~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~-------------v-------~~~~~~~~~~~------------------ 185 (340)
T 4aow_A 144 VSGSRDKTIKLWNTLGVCKYTVQDESHSEW-------------V-------SCVRFSPNSSN------------------ 185 (340)
T ss_dssp EEEETTSCEEEECTTSCEEEEECSSSCSSC-------------E-------EEEEECSCSSS------------------
T ss_pred eeecCCCeEEEEEeCCCceEEEEeccccCc-------------c-------cceEEccCCCC------------------
Confidence 6665 568999998765432211 111111 1 12333321100
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
. + ...++.|+.|++|
T Consensus 186 --------~------------------------------------------------------~---~~s~~~d~~i~i~ 200 (340)
T 4aow_A 186 --------P------------------------------------------------------I---IVSCGWDKLVKVW 200 (340)
T ss_dssp --------C------------------------------------------------------E---EEEEETTSCEEEE
T ss_pred --------c------------------------------------------------------E---EEEEcCCCEEEEE
Confidence 0 0 0123578999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCC----C----------CCCCCccccCCCCc
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSK----G----------RSGSASQTYDWTSS 436 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~----~----------~~g~~~~~~~~~~~ 436 (627)
|+.+++.+..+.+|..+|.+|+|+|+|++|++++.||+ |+|||+...... . +.+...... .. .
T Consensus 201 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d-~ 277 (340)
T 4aow_A 201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAA-TG-P 277 (340)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEE-ET-T
T ss_pred ECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeecCCCCceeecc-CC-C
Confidence 99999999999999999999999999999999999998 899998621100 0 000000000 00 0
Q ss_pred eeEEEEEe-----------------ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 437 HVHLYKLH-----------------RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~-----------------rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+++.++ .++ ...|.+|+|+||+++|++++.||+|+||++..
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 11222221 123 23599999999999999999999999999874
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-20 Score=186.15 Aligned_cols=275 Identities=13% Similarity=0.079 Sum_probs=189.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..+.+.|..+.| . + .+.+++.+.++.++|||++.. .....+..|++.|..+.+.|.. .+
T Consensus 15 ~~h~~~v~~~~~-~---~---~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~-------------~~ 73 (313)
T 3odt_A 15 KGHDQDVRDVVA-V---D---DSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEK-------------EL 73 (313)
T ss_dssp CCCSSCEEEEEE-E---E---TTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTT-------------TE
T ss_pred hCCCCCcEEEEe-c---C---CCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCC-------------CE
Confidence 356788888888 2 1 256777888888999999764 4566777789999999998753 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC---ceEEEEe-cCCeEEEEEecCcEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH---NYVHVLR-FRSTVYMVRCSPRIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~---~~V~tL~-f~s~V~sV~~s~~~LaV 214 (627)
|++.. .++.|++|++... +.+.++. +...|.++.++.+.|++
T Consensus 74 l~~~~----------------------------------~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 119 (313)
T 3odt_A 74 LLFGG----------------------------------KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVIS 119 (313)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEE
T ss_pred EEEec----------------------------------CCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEE
Confidence 55432 1256999998754 5677776 55699999999888888
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeE---cCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAV---GPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl---~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
+. ++.|++|| +.+.+..+..|..+ ...+++ .+++|+.++.+..+.+|...
T Consensus 120 ~~~d~~i~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------- 173 (313)
T 3odt_A 120 GSWDKTAKVWK--EGSLVYNLQAHNAS-------------VWDAKVVSFSENKFLTASADKTIKLWQND----------- 173 (313)
T ss_dssp EETTSEEEEEE--TTEEEEEEECCSSC-------------EEEEEEEETTTTEEEEEETTSCEEEEETT-----------
T ss_pred EeCCCCEEEEc--CCcEEEecccCCCc-------------eeEEEEccCCCCEEEEEECCCCEEEEecC-----------
Confidence 76 55899999 66777777776543 223333 45788887766554433200
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
+....+..........+. | .|+ +.+ ..+..+|.|++|
T Consensus 174 --------------------~~~~~~~~~~~~~i~~~~--~---~~~--------------~~~----~~~~~dg~i~i~ 210 (313)
T 3odt_A 174 --------------------KVIKTFSGIHNDVVRHLA--V---VDD--------------GHF----ISCSNDGLIKLV 210 (313)
T ss_dssp --------------------EEEEEECSSCSSCEEEEE--E---EET--------------TEE----EEEETTSEEEEE
T ss_pred --------------------ceEEEEeccCcccEEEEE--E---cCC--------------CeE----EEccCCCeEEEE
Confidence 000000000000000000 0 011 112 245689999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
|+.+++.+..+..|..+|.+++|+|+| .|++++.||+ |+|||+. ++. .+..+ .++. .
T Consensus 211 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~-------~~~------------~~~~~-~~~~-~ 267 (313)
T 3odt_A 211 DMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKE-------NGS------------LKQVI-TLPA-I 267 (313)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTT-------TCC------------EEEEE-ECSS-S
T ss_pred ECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECC-------CCc------------eeEEE-eccC-c
Confidence 999999999999999999999999999 5889999997 8999986 231 44444 4443 3
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.|.+++|+||++ +++++.||+|+||+++..
T Consensus 268 ~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 268 SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred eEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 599999999999 557999999999999753
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-20 Score=193.49 Aligned_cols=240 Identities=11% Similarity=0.175 Sum_probs=163.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ....++..+.|+.++|||+.+... ...+..|.+.|..+.+.|.. .+|
T Consensus 74 ~h~~~V~~~~~~~------~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~-------------~~l 133 (343)
T 2xzm_R 74 GHNHFVSDLALSQ------ENCFAISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDN-------------RQI 133 (343)
T ss_dssp CCSSCEEEEEECS------STTEEEEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSST-------------TEE
T ss_pred cCCCceEEEEECC------CCCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCC-------------CEE
Confidence 4566777788853 236778888899999999998653 44556788999999987753 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE---ecCCeEEEEEecC-------
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL---RFRSTVYMVRCSP------- 209 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL---~f~s~V~sV~~s~------- 209 (627)
+..+ .+++|++||++........ .+...|.++++++
T Consensus 134 ~s~~----------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (343)
T 2xzm_R 134 LSAG----------------------------------AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179 (343)
T ss_dssp EEEE----------------------------------TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred EEEc----------------------------------CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccc
Confidence 5432 1367999999844333222 2445899999986
Q ss_pred -----cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCC
Q 046828 210 -----RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 210 -----~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
.+|+++. ++.|++|| .+.+..+++..|..+ +..+ ++.++...
T Consensus 180 ~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~-------------v~~~-------~~s~~g~~----------- 227 (343)
T 2xzm_R 180 VQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN-------------VNHL-------SISPNGKY----------- 227 (343)
T ss_dssp CCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC-------------EEEE-------EECTTSSE-----------
T ss_pred cCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc-------------ceEE-------EECCCCCE-----------
Confidence 3566665 66899999 456667777776543 2233 33332100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
+ +.++.
T Consensus 228 ----------------------------l----------------------------------------------~sgs~ 233 (343)
T 2xzm_R 228 ----------------------------I----------------------------------------------ATGGK 233 (343)
T ss_dssp ----------------------------E----------------------------------------------EEEET
T ss_pred ----------------------------E----------------------------------------------EEEcC
Confidence 0 02347
Q ss_pred CCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
||.|+|||+.+. .....+ .|..+|.+++|+|++.+|++++ |+. |+|||+... .. ..+..
T Consensus 234 dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~-d~~-v~iw~~~~~-------~~----------~~~~~ 293 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGT-DQG-VKIFNLMTQ-------SK----------APVCT 293 (343)
T ss_dssp TCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEE-SSC-EEEEESSSC-------CS----------CSEEE
T ss_pred CCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEEC-CCC-EEEEEeCCC-------CC----------CceEE
Confidence 899999999543 334444 3556799999999999998766 455 799998621 10 01112
Q ss_pred Ee----------ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LH----------RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~----------rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+. +|+. ..|.+++|+||+++|++++.||+|+||+++.
T Consensus 294 ~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKN-PQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCCCSGGGBTTBCCSC-CCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred eecCcchhhhhhcCCC-CceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 21 2443 3599999999999999999999999999863
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-20 Score=196.86 Aligned_cols=253 Identities=17% Similarity=0.218 Sum_probs=173.8
Q ss_pred CCCCcE-EEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQV-LWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V-~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.+.| .++.|+. +.+++.+.++.++|||+.+.. ....+..|.++|..+.+.|. .+
T Consensus 119 ~h~~~v~~~~~~~~--------~~l~sgs~dg~i~vwd~~~~~-~~~~~~~h~~~V~~l~~~~~--------------~~ 175 (464)
T 3v7d_B 119 GHMTSVITCLQFED--------NYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHG--------------GI 175 (464)
T ss_dssp CCSSSCEEEEEEET--------TEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECST--------------TE
T ss_pred CCCCCcEEEEEECC--------CEEEEEcCCCcEEEEECCCCc-EEEEEeCCCcCEEEEEEcCC--------------CE
Confidence 345554 4667752 577888889999999998855 44555678999999998643 24
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC----cEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP----RIVA 213 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~----~~La 213 (627)
|+... .+++|++||+++++.++++. +...|.++++++ ++|+
T Consensus 176 l~s~s----------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 176 LVSGS----------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEE
T ss_pred EEEEe----------------------------------CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEE
Confidence 44322 13679999999999999998 567999999973 5677
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC----ceEEEcCCCCCcCCCCccCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP----RWLAYASNNPLLPNTGRLSPQSLTPPS 288 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~----r~LAy~~~~~~v~~~gr~~~q~~t~~~ 288 (627)
++. ++.|++||+.+.+.......... ...+...+ ..+..-.
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-------------------- 267 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEEHD--------------YPLVFHTPEENPYFVGVLR-------------------- 267 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------CC--------------SSEEESCGGGCTTEEEEEC--------------------
T ss_pred EEcCCCcEEEeeCCCCcccccccccCC--------------cceEeeccCCCeEEEEEcc--------------------
Confidence 665 56899999998775543321110 00000000 0000000
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 289 VSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 289 ~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
++.+. ..++ +++ ..+ ..+..||.|
T Consensus 268 -------------------------------~~~~~v~~~~-------~~~-------------~~l----~~~~~d~~i 292 (464)
T 3v7d_B 268 -------------------------------GHMASVRTVS-------GHG-------------NIV----VSGSYDNTL 292 (464)
T ss_dssp -------------------------------CCSSCEEEEE-------EET-------------TEE----EEEETTSCE
T ss_pred -------------------------------CccceEEEEc-------CCC-------------CEE----EEEeCCCeE
Confidence 00000 0010 000 001 235689999
Q ss_pred EEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC
Q 046828 368 VVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM 447 (627)
Q Consensus 368 ~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~ 447 (627)
++||+.+++.+..+.+|..+|.+++|+|+|.+|++++.||+ |+|||+. ++ ..+..+ +++
T Consensus 293 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~-------~~------------~~~~~~-~~h 351 (464)
T 3v7d_B 293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLE-------NG------------ELMYTL-QGH 351 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETT-------TT------------EEEEEE-CCC
T ss_pred EEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECC-------CC------------cEEEEE-eCC
Confidence 99999999999999999999999999999999999999998 8999986 33 245555 566
Q ss_pred CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 448 TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 448 t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
. ..|.+++|+ +++|++++.||+|++|++....
T Consensus 352 ~-~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 352 T-ALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp S-SCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred C-CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 4 459999997 5899999999999999998643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=207.10 Aligned_cols=267 Identities=13% Similarity=0.130 Sum_probs=171.4
Q ss_pred EEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCC
Q 046828 93 QVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQP 172 (627)
Q Consensus 93 qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~ 172 (627)
.+|+..+.. ....+..|.++|.++.+.|.. .+|+...
T Consensus 49 ~~~~~~~~~-~~~~l~gH~~~V~~~~~sp~~-------------~~l~s~s----------------------------- 85 (380)
T 3iz6_a 49 VSFNPTDLV-CCRTLQGHSGKVYSLDWTPEK-------------NWIVSAS----------------------------- 85 (380)
T ss_dssp CCCCCCCCE-EEEEECCCSSCEEEEEECTTS-------------SCEEEEE-----------------------------
T ss_pred cccccceeE-EeecccccccEEEEEEEcCCC-------------CEEEEEe-----------------------------
Confidence 345554432 345667799999999998743 4555322
Q ss_pred CCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEe-CCeEEEEeCCCCce-------eEEEEcCCCCC
Q 046828 173 GNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGL-AAQIYCFDALTLES-------KFSVLTYPVPH 241 (627)
Q Consensus 173 ~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~-------~~tl~~~p~~~ 241 (627)
.+++|+|||+.+++.+++++.+ ..|.+++|++ ++|+++. ++.|+|||+.+... ...+.+|...
T Consensus 86 -----~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~- 159 (380)
T 3iz6_a 86 -----QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY- 159 (380)
T ss_dssp -----TTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC-
T ss_pred -----CCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc-
Confidence 2478999999999999999855 4899999987 6777775 56899999976431 2233344321
Q ss_pred CCCCCCcCcccccceeeEcC---ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 242 FGGQGTSGVNIGYGPMAVGP---RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 242 ~~~~g~~~~~~~~~~iAl~~---r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
...+++.| ..|+.++.+..+.+|..... ..+..+.. + ..
T Consensus 160 ------------v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~-----------------~~~~~~~~----~-----~~ 201 (380)
T 3iz6_a 160 ------------ASSCQYVPDQETRLITGSGDQTCVLWDVTTG-----------------QRISIFGS----E-----FP 201 (380)
T ss_dssp ------------CCCCBCCSSSSSCEEEECTTSCEEEECTTTC-----------------CEEEEECC----C-----SS
T ss_pred ------------eEEEEEecCCCCEEEEECCCCcEEEEEcCCC-----------------cEEEEeec----c-----cC
Confidence 12233333 46888887777665532100 00000000 0 00
Q ss_pred cCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC-CCeEEEEeccCCCCeEEEEECCC
Q 046828 319 LGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV-SRSVISQFRAHTSPISALCFDRS 396 (627)
Q Consensus 319 lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspd 396 (627)
.++... ..+. +. | . .+. ...+++.||.|+|||+. ..+.+..+.+|..+|.+|+|+|+
T Consensus 202 ~~h~~~v~~~~--~~---~--------~-----~~~---~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 202 SGHTADVLSLS--IN---S--------L-----NAN---MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260 (380)
T ss_dssp SSCCSCEEEEE--EC---S--------S-----SCC---EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred CCCccCeEEEE--ee---c--------C-----CCC---EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence 011000 0000 00 0 0 011 11246789999999997 45778899999999999999999
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC-----cCcEEEEEEccCCCEEEEEeCCC
Q 046828 397 GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT-----SAVIQDICFSHYSQWIAIVSSRG 471 (627)
Q Consensus 397 G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t-----~a~I~sIaFSpDg~~Las~S~dg 471 (627)
|.+|+|++.||+ |+|||+. ++ ..+..+..... ...|.+++|+|||++|++++.||
T Consensus 261 ~~~l~s~s~D~~-i~lwd~~-------~~------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 261 GQRFGTGSDDGT-CRLFDMR-------TG------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp SSEEEEECSSSC-EEEEETT-------TT------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred CCeEEEEcCCCe-EEEEECC-------CC------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 999999999998 8999986 23 13333322111 12389999999999999999999
Q ss_pred eEEEEEcCCCCCeeec
Q 046828 472 TCHIFVLTPFGGETVL 487 (627)
Q Consensus 472 TvhIw~i~~~gg~~~~ 487 (627)
+|+||++........+
T Consensus 321 ~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 321 DCYVWDTLLAEMVLNL 336 (380)
T ss_dssp CEEEEETTTCCEEEEE
T ss_pred CEEEEECCCCceEEEE
Confidence 9999998754433333
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-22 Score=208.18 Aligned_cols=260 Identities=13% Similarity=0.086 Sum_probs=173.8
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEE--eeecCCceEEEEEeeCCCCCCCCCCc
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSEL--VSRRDDPVTFLQMQPLPAKSDGQEGF 132 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~el--ls~~dG~V~~v~~lp~p~~~~~~D~f 132 (627)
+.+.|..+.|... ..+.+++.+.++.++|||+.... ....+ +..|.+.|..+.+.|..
T Consensus 112 h~~~v~~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 177 (416)
T 2pm9_A 112 HSSSVKTVKFNAK-----QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--------- 177 (416)
T ss_dssp SSSCCCEEEECSS-----STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC---------
T ss_pred CccceEEEEEcCC-----CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC---------
Confidence 5566777777431 23667778888899999999865 22222 34577888888887651
Q ss_pred CCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-------CCeEEEE
Q 046828 133 RNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-------RSTVYMV 205 (627)
Q Consensus 133 ~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-------~s~V~sV 205 (627)
..+|+... .+++|++||+++++.+.++.. ...|.++
T Consensus 178 ---~~~l~~~~----------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 178 ---AHVFASAG----------------------------------SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220 (416)
T ss_dssp ---TTEEEEES----------------------------------SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred ---CcEEEEEc----------------------------------CCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence 14554321 126699999999999999986 4689999
Q ss_pred EecC---cEEEEEeCC----eEEEEeCCCCc-eeEEEE-cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCC
Q 046828 206 RCSP---RIVAVGLAA----QIYCFDALTLE-SKFSVL-TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNT 276 (627)
Q Consensus 206 ~~s~---~~LaV~~~~----~I~i~D~~t~e-~~~tl~-~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~ 276 (627)
++++ .+|+++..+ .|++||+.+++ .+..+. +|..+ + .-+++.+.+.
T Consensus 221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~-------------v-------~~~~~s~~~~----- 275 (416)
T 2pm9_A 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG-------------I-------LSLDWCHQDE----- 275 (416)
T ss_dssp EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC-------------E-------EEEEECSSCS-----
T ss_pred EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc-------------e-------eEEEeCCCCC-----
Confidence 9997 477777655 89999999873 444443 33221 1 1233332110
Q ss_pred CccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccc
Q 046828 277 GRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNAS 356 (627)
Q Consensus 277 gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~ 356 (627)
.+ +
T Consensus 276 ----------------------~~-----------------------------------------------------l-- 278 (416)
T 2pm9_A 276 ----------------------HL-----------------------------------------------------L-- 278 (416)
T ss_dssp ----------------------SC-----------------------------------------------------E--
T ss_pred ----------------------Ce-----------------------------------------------------E--
Confidence 00 0
Q ss_pred cccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCC-ccccCCC
Q 046828 357 HSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSA-SQTYDWT 434 (627)
Q Consensus 357 ~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~-~~~~~~~ 434 (627)
..+..||.|+|||+.+++.+..+..|..+|.+++|+|+| .+|++++.||+ |+|||+....... .-.. ....+
T Consensus 279 --~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~~~~~~~~~-~~~~~~~~~~-- 352 (416)
T 2pm9_A 279 --LSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQTLQNLTNTL-DEQETETKQQ-- 352 (416)
T ss_dssp --EEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEESCCCCCSS-CC----------
T ss_pred --EEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEEccCCCCCc-cccccccccc--
Confidence 123468999999999999999999999999999999999 89999999997 8999986221100 0000 00000
Q ss_pred CceeEEE-----------------EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 435 SSHVHLY-----------------KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 435 ~~~~~l~-----------------~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.....++ +..+.+ ...|.+++|||||++||+++.||+|+||++..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 353 ESETDFWNNVSREESKEKPSVFHLQAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp --------------CCSCCCSSCCCCCSTT-CCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred CCcccccccccccccccccccccccCCccc-cCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 0000000 000112 23477999999999999999999999999875
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-20 Score=194.90 Aligned_cols=265 Identities=12% Similarity=0.137 Sum_probs=174.8
Q ss_pred CCcEEEEEeeccCCCCCCCC-eEEEEeccCcEEEEec----CCCCC-----ceEEeee----------cCCceEEEEEee
Q 046828 62 KDQVLWSSFDKLELSPSSFK-HVLLLGYSNGFQVLDV----EDATN-----VSELVSR----------RDDPVTFLQMQP 121 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~-~vl~~Gy~~G~qVWdv----~~~~~-----~~ells~----------~dG~V~~v~~lp 121 (627)
.+.|..+.|.. ..+ .+++.+.++.++|||+ ..... ....+.. |.+.|.++.+.|
T Consensus 45 ~~~v~~~~~s~------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 45 LDNIVSSTWNP------LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp CSCCSEEEECS------SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred cCceEEEEECC------CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 35666777753 224 6777777888999999 76541 1222333 566888888876
Q ss_pred CCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCC
Q 046828 122 LPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRS 200 (627)
Q Consensus 122 ~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s 200 (627)
.. .+|++.. .+++|++|| .+++.+..+. +..
T Consensus 119 ~~-------------~~l~~~~----------------------------------~dg~i~i~~-~~~~~~~~~~~~~~ 150 (425)
T 1r5m_A 119 DG-------------NSIVTGV----------------------------------ENGELRLWN-KTGALLNVLNFHRA 150 (425)
T ss_dssp TS-------------SEEEEEE----------------------------------TTSCEEEEE-TTSCEEEEECCCCS
T ss_pred CC-------------CEEEEEe----------------------------------CCCeEEEEe-CCCCeeeeccCCCc
Confidence 42 5665432 125699999 7888899888 556
Q ss_pred eEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCC
Q 046828 201 TVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTG 277 (627)
Q Consensus 201 ~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~g 277 (627)
.|.++.+++ +.|+++. ++.|++||+.+++.+..+..+..+. ..+. ..........
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~----- 208 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG-------------SSIN----AENHSGDGSL----- 208 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------CCC-----
T ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc-------------ccee----eccccCCcce-----
Confidence 999999987 5666665 5689999999999887775543210 0000 0000000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCccccc
Q 046828 278 RLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASH 357 (627)
Q Consensus 278 r~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~ 357 (627)
+ ..+. ++ |+ +.+
T Consensus 209 -----------------------~------------~~~~---------~~-------~~--------------~~~--- 220 (425)
T 1r5m_A 209 -----------------------G------------VDVE---------WV-------DD--------------DKF--- 220 (425)
T ss_dssp -----------------------B------------SCCE---------EE-------ET--------------TEE---
T ss_pred -----------------------e------------eEEE---------Ec-------CC--------------CEE---
Confidence 0 0000 00 00 011
Q ss_pred ccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 358 SSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 358 ~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
..+..+|.|++||+.+++.+..+..|..+|.+++|+|+|++|++++.+|+ |+|||+. .+.
T Consensus 221 -~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~-------~~~----------- 280 (425)
T 1r5m_A 221 -VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-LRIWHGG-------NGN----------- 280 (425)
T ss_dssp -EEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEECSS-------SBS-----------
T ss_pred -EEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE-EEEEECC-------CCc-----------
Confidence 12457899999999999999999999999999999999999999999998 7999986 221
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
.+..+ .++. ..|.+++|+||+ +|++++.||+|+||++........+..|...+
T Consensus 281 -~~~~~-~~~~-~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i 333 (425)
T 1r5m_A 281 -SQNCF-YGHS-QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333 (425)
T ss_dssp -CSEEE-CCCS-SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred -cceEe-cCCC-ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccE
Confidence 22333 3443 459999999999 99999999999999998755444555554433
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-20 Score=211.34 Aligned_cols=248 Identities=14% Similarity=0.176 Sum_probs=177.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC----ceEEeeecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN----VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~----~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
..|.+.|..+.|.. ...+.+++.+.|+.++|||+...+. ....+..|.+.|..+.+.|..
T Consensus 379 ~~H~~~V~~v~~~~-----~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g----------- 442 (694)
T 3dm0_A 379 RAHTDMVTAIATPI-----DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG----------- 442 (694)
T ss_dssp ECCSSCEEEEECCT-----TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-----------
T ss_pred ccCCceeEEEEecC-----CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-----------
Confidence 46888999998853 1235677788899999999986432 234567789999999887642
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cE
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RI 211 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~ 211 (627)
.+|+..+ .+++|+|||+++++.++++. +...|.+|++++ +.
T Consensus 443 --~~l~sgs----------------------------------~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 486 (694)
T 3dm0_A 443 --QFALSGS----------------------------------WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ 486 (694)
T ss_dssp --SEEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSC
T ss_pred --CEEEEEe----------------------------------CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCE
Confidence 4554322 13789999999999999987 556999999987 56
Q ss_pred EEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 212 VAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 212 LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
|+++. ++.|+|||.... +...+...... . ...+ ..+++.++...
T Consensus 487 l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~------h------~~~v----~~~~~~~~~~~------------------ 531 (694)
T 3dm0_A 487 IVSASRDRTIKLWNTLGE-CKYTISEGGEG------H------RDWV----SCVRFSPNTLQ------------------ 531 (694)
T ss_dssp EEEEETTSCEEEECTTSC-EEEEECSSTTS------C------SSCE----EEEEECSCSSS------------------
T ss_pred EEEEeCCCEEEEEECCCC-cceeeccCCCC------C------CCcE----EEEEEeCCCCc------------------
Confidence 76665 568999998643 33333211100 0 0001 12333321100
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
. .+ .+++.||.|+||
T Consensus 532 --------~-----------------------------------------------------~l----~s~s~d~~v~vw 546 (694)
T 3dm0_A 532 --------P-----------------------------------------------------TI----VSASWDKTVKVW 546 (694)
T ss_dssp --------C-----------------------------------------------------EE----EEEETTSCEEEE
T ss_pred --------c-----------------------------------------------------eE----EEEeCCCeEEEE
Confidence 0 00 134578999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
|+.+.+.+..+.+|..+|.+|+|+|+|++|++++.||+ |+|||+. ++ ..++.+. . ..
T Consensus 547 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~-------~~------------~~~~~~~-~--~~ 603 (694)
T 3dm0_A 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLA-------EG------------KKLYSLE-A--NS 603 (694)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETT-------TT------------EEEECCB-C--SS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECC-------CC------------ceEEEec-C--CC
Confidence 99999999999999999999999999999999999998 7999986 33 2555543 2 24
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.|.+++|+||+.+|++++ ++.|+||++....
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 599999999999998876 4569999997643
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=193.17 Aligned_cols=269 Identities=14% Similarity=0.178 Sum_probs=176.6
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.... .....+++.+.++.+++||+.........+..|.+.|..+.+.+.- .|.....+|
T Consensus 63 ~~~~~v~~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~s~~~~~l 132 (357)
T 3i2n_A 63 EKAKPIKCGTFGATS---LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL-------GIGEGAPEI 132 (357)
T ss_dssp EESSCEEEEECTTCC---TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-------GCC-CCCEE
T ss_pred cccCcEEEEEEcCCC---CCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc-------ccCCCccEE
Confidence 345677777775321 0136777888889999999998764556677889999999887531 123333666
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc-eEEEEec-C----CeEEEEE----ecC
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN-YVHVLRF-R----STVYMVR----CSP 209 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~-~V~tL~f-~----s~V~sV~----~s~ 209 (627)
+... .+++|++||+++++ .+.+++. . ..|+++. +++
T Consensus 133 ~~~~----------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 133 VTGS----------------------------------RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp EEEE----------------------------------TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred EEEe----------------------------------CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence 5432 12569999999987 7888863 2 2788988 443
Q ss_pred --cEEEEEeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCC
Q 046828 210 --RIVAVGLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTP 286 (627)
Q Consensus 210 --~~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~ 286 (627)
++|+++.. +.|++||+.+++.... ..+..+ +.. +++.+...
T Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~-------------v~~-------~~~~~~~~--------------- 222 (357)
T 3i2n_A 179 EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG-------------VCS-------LEFDRKDI--------------- 222 (357)
T ss_dssp CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSC-------------EEE-------EEESCSSS---------------
T ss_pred CCCEEEEEccCCeEEEEECccCceeee-cCCCCc-------------eEE-------EEcCCCCC---------------
Confidence 77887765 6899999999886443 333222 222 33332100
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe
Q 046828 287 PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 287 ~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~ 366 (627)
.+.. + ..+..+|.
T Consensus 223 ----------~~~~-----------------------------------------------------l----~~~~~dg~ 235 (357)
T 3i2n_A 223 ----------SMNK-----------------------------------------------------L----VATSLEGK 235 (357)
T ss_dssp ----------SCCE-----------------------------------------------------E----EEEESTTE
T ss_pred ----------CCCE-----------------------------------------------------E----EEECCCCe
Confidence 0000 0 02346899
Q ss_pred EEEEECCCCeEEEEe-----ccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCC---CCCCCccccCCCCce
Q 046828 367 VVVKDIVSRSVISQF-----RAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKG---RSGSASQTYDWTSSH 437 (627)
Q Consensus 367 V~IwD~~s~~~l~~~-----~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~---~~g~~~~~~~~~~~~ 437 (627)
|+|||+.+++.+..+ .+|..+|.+++|+|+|. +|++++.||+ |+|||+....... ..|. ........
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~---~~~~~~~~ 311 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGI---EMGVAGSV 311 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSC---CCCCCCEE
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCC---cccccccc
Confidence 999999877654444 49999999999999999 8999999997 8999986211000 0000 00000111
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEE-EEeCCCeEEEEEcCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIA-IVSSRGTCHIFVLTPF 481 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~La-s~S~dgTvhIw~i~~~ 481 (627)
..+..+ .++. ..|.+++|+||+++|+ +++.||+|+||++...
T Consensus 312 ~~~~~~-~~~~-~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 312 SLLQNV-TLST-QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEE-ECCS-SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ceeecc-ccCC-CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 234444 5664 4699999999999999 7999999999999753
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=202.07 Aligned_cols=254 Identities=13% Similarity=0.159 Sum_probs=174.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCC---CCCce-EEeeecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVED---ATNVS-ELVSRRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~---~~~~~-ells~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
+.+.+.|..+.|... ..+.+++.+.|+.++|||+.. ..... .+.-.|.++|..+.+.|..
T Consensus 60 ~~h~~~V~~~~~s~~-----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------- 123 (437)
T 3gre_A 60 ENEPNSITSSAVSPG-----ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF----------- 123 (437)
T ss_dssp TTTTSCEEEEEEECS-----SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-----------
T ss_pred cCCCCceEEEEECCC-----CCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-----------
Confidence 345688999999631 236778888889999999986 32122 2222588999999988643
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECC---CCceEEEEecC------------
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLR---SHNYVHVLRFR------------ 199 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~---t~~~V~tL~f~------------ 199 (627)
.+|+... .+++|++||+. +++.+..+..+
T Consensus 124 --~~l~s~s----------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (437)
T 3gre_A 124 --DAFAVSS----------------------------------KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK 167 (437)
T ss_dssp --SEEEEEE----------------------------------TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred --CEEEEEe----------------------------------CCCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence 4555432 13789999994 67666655433
Q ss_pred -CeEEEEEe--c--CcEEEEEe-CCeEEEEeCCCCceeEEEEc--CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCC
Q 046828 200 -STVYMVRC--S--PRIVAVGL-AAQIYCFDALTLESKFSVLT--YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNP 271 (627)
Q Consensus 200 -s~V~sV~~--s--~~~LaV~~-~~~I~i~D~~t~e~~~tl~~--~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~ 271 (627)
..+.++.+ + .++|+++. ++.|++||+.+++.+.++.. |..+ +..+ ++.++..
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-------------v~~~-------~~s~~~~ 227 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA-------------VSSI-------CIDEECC 227 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC-------------EEEE-------EECTTSC
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc-------------eEEE-------EECCCCC
Confidence 23444442 2 35777775 56899999999999999877 3222 2223 3332110
Q ss_pred CcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCcccc
Q 046828 272 LLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKA 351 (627)
Q Consensus 272 ~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~ 351 (627)
. +
T Consensus 228 ~---------------------------------------l--------------------------------------- 229 (437)
T 3gre_A 228 V---------------------------------------L--------------------------------------- 229 (437)
T ss_dssp E---------------------------------------E---------------------------------------
T ss_pred E---------------------------------------E---------------------------------------
Confidence 0 0
Q ss_pred CcccccccCCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEE----ECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCC
Q 046828 352 GRNASHSSDTDIAGMVVVKDIVSRSVISQFR-AHTSPISALC----FDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGS 426 (627)
Q Consensus 352 g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~la----FspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~ 426 (627)
..+..||.|+|||+.+++.+..+. .|..+|.+++ |+|+|.+|++++.||+ |+|||+. ++.
T Consensus 230 -------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~-------~~~ 294 (437)
T 3gre_A 230 -------ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFV-------KGH 294 (437)
T ss_dssp -------EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETT-------TTE
T ss_pred -------EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcC-------CCc
Confidence 023468999999999999999987 8888999994 5567999999999997 8999986 221
Q ss_pred CccccCCCCceeEEEEEe-----------------------ec-CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 427 ASQTYDWTSSHVHLYKLH-----------------------RG-MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 427 ~~~~~~~~~~~~~l~~l~-----------------------rG-~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.+..+. .| .....|.+++|+ ++++|++++.||+|+||++....
T Consensus 295 ------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 295 ------------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp ------------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ------------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 222222 12 022348999999 88999999999999999998765
Q ss_pred Ceeecccc
Q 046828 483 GETVLQIQ 490 (627)
Q Consensus 483 g~~~~~~h 490 (627)
....+..|
T Consensus 362 ~~~~~~~~ 369 (437)
T 3gre_A 362 SSKAVISP 369 (437)
T ss_dssp GCEEEECC
T ss_pred cceEEecc
Confidence 55555554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=194.65 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=177.3
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeee----cCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSR----RDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~----~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
+.+.+.|..+.|... .......+++.+.++.++|||+...+.+.++-.. +++.|..+.+.|....
T Consensus 15 ~~h~~~v~~i~~~p~--~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------- 83 (366)
T 3k26_A 15 EDHNQPLFGVQFNWH--SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT--------- 83 (366)
T ss_dssp CTTCSCEEEEEECTT--CCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTT---------
T ss_pred cCCCCceEEEEEecc--cCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCC---------
Confidence 357789999999742 1112356778888889999999976654444322 4477889999886421
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---c
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---R 210 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~ 210 (627)
...+|++.. .+++|++||+++++.+.++. +...|.+++|++ +
T Consensus 84 ~~~~l~~~~----------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 129 (366)
T 3k26_A 84 SHPLLAVAG----------------------------------SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN 129 (366)
T ss_dssp CCEEEEEEE----------------------------------TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT
T ss_pred CCCEEEEec----------------------------------CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC
Confidence 124655432 13679999999999999998 667999999986 6
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEE---cCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVL---TYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSL 284 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~---~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~ 284 (627)
+|+++. ++.|++||+.+++.+..+. .|..+ +..+++.| ++|+.++.+
T Consensus 130 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l~~~~~d-------------- 182 (366)
T 3k26_A 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE-------------VLSADYDLLGEKIMSCGMD-------------- 182 (366)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC-------------EEEEEECTTSSEEEEEETT--------------
T ss_pred EEEEEeCCCeEEEEEeecCeEEEEecccccccCc-------------eeEEEECCCCCEEEEecCC--------------
Confidence 777776 5689999999998887773 33322 33345443 455555433
Q ss_pred CCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCC
Q 046828 285 TPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIA 364 (627)
Q Consensus 285 t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~d 364 (627)
T Consensus 183 -------------------------------------------------------------------------------- 182 (366)
T 3k26_A 183 -------------------------------------------------------------------------------- 182 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEECCCCe----------------------------EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 365 GMVVVKDIVSRS----------------------------VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 365 G~V~IwD~~s~~----------------------------~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
|.|++||+.+++ ....+..|..+|.+++|+ |.+|++++.||+ |+|||+.
T Consensus 183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~-i~~wd~~ 259 (366)
T 3k26_A 183 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA-IVCWKPG 259 (366)
T ss_dssp SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE-EEEEEES
T ss_pred CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCE-EEEEeCC
Confidence 344444443332 234455699999999999 889999999997 8999986
Q ss_pred CCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccC--CCEEEEEeCCCeEEEEEcCCCC
Q 046828 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHY--SQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 417 p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD--g~~Las~S~dgTvhIw~i~~~g 482 (627)
..... ............+.....++. ..|.+++|+|| +++|++++.||+|+||++....
T Consensus 260 ~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 260 KMEDD------IDKIKPSESNVTILGRFDYSQ-CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp STTCC------GGGCCTTCCCEEEEEEEECSS-CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred Ccccc------ccccccCCcchheeccccccC-CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 21100 000001111112233335554 35999999999 9999999999999999998643
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=194.82 Aligned_cols=276 Identities=15% Similarity=0.169 Sum_probs=209.6
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
-..+.+.|..+.|+. ..+++.+.++.++|||+++.. ....+..|.+.|.++.+.+ .
T Consensus 155 ~~~h~~~v~~~~~~~--------~~l~s~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~---------------~ 210 (445)
T 2ovr_B 155 LVGHTGGVWSSQMRD--------NIIISGSTDRTLKVWNAETGE-CIHTLYGHTSTVRCMHLHE---------------K 210 (445)
T ss_dssp CCCCSSCEEEEEEET--------TEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEET---------------T
T ss_pred EcCCCCCEEEEEecC--------CEEEEEeCCCeEEEEECCcCc-EEEEECCCCCcEEEEEecC---------------C
Confidence 357788999999998 479999999999999999965 4566678999999999964 3
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL 216 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~ 216 (627)
+|++.+. +++|++||+++++.+.++. +...|.++.+..++|+++.
T Consensus 211 ~l~s~s~----------------------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 256 (445)
T 2ovr_B 211 RVVSGSR----------------------------------DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 256 (445)
T ss_dssp EEEEEET----------------------------------TSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred EEEEEeC----------------------------------CCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEc
Confidence 5778883 2679999999999999986 9999999999998888876
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++.+.++.+|..+ +..+++.+++|+.++.+..+.+|....
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~d~~i~i~d~~~--------------- 308 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSIRVWDVET--------------- 308 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCEEEEETTT---------------
T ss_pred CCCEEEEEECCCCcEeEEecCCCCc-------------eEEEEECCCEEEEEeCCCeEEEEECCC---------------
Confidence 557999999999999999888777 456778999999998776655442110
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+. ....+ .++... ..+. +....+ ..+..||.|+|||+.+
T Consensus 309 --~~------------~~~~~--~~~~~~v~~~~--------------------~~~~~l----~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 309 --GN------------CIHTL--TGHQSLTSGME--------------------LKDNIL----VSGNADSTVKIWDIKT 348 (445)
T ss_dssp --CC------------EEEEE--CCCCSCEEEEE--------------------EETTEE----EEEETTSCEEEEETTT
T ss_pred --CC------------EEEEE--cCCcccEEEEE--------------------EeCCEE----EEEeCCCeEEEEECCC
Confidence 00 00000 011100 0000 000111 2456899999999999
Q ss_pred CeEEEEecc---CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe---ecCC
Q 046828 375 RSVISQFRA---HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH---RGMT 448 (627)
Q Consensus 375 ~~~l~~~~a---H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~---rG~t 448 (627)
++.+..+.. |..+|.+++|+ +.+|++++.||+ |+|||+. ++. .+..+. .+..
T Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~-v~iwd~~-------~~~------------~~~~~~~~~~~~~ 406 (445)
T 2ovr_B 349 GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT-VKLWDLK-------TGE------------FIRNLVTLESGGS 406 (445)
T ss_dssp CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE-EEEEETT-------TCC------------EEEEEEECTTGGG
T ss_pred CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCe-EEEEECC-------CCc------------eeeeeeccccCCC
Confidence 999999986 88999999996 689999999997 8999986 332 344442 1223
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCe----EEEEEcCCC
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGT----CHIFVLTPF 481 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgT----vhIw~i~~~ 481 (627)
...|.+++|+||+.+||+++.||+ ++||+++..
T Consensus 407 ~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 407 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 456999999999999999999998 999998753
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-20 Score=189.13 Aligned_cols=239 Identities=11% Similarity=0.105 Sum_probs=172.5
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+.+.|..+.|.. +.+.+++.+.++.++|||++... +....+..|.+.|..+.+.|.. .+|
T Consensus 7 ~~~~i~~~~~s~------~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l 67 (372)
T 1k8k_C 7 LVEPISCHAWNK------DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-------------NRI 67 (372)
T ss_dssp CSSCCCEEEECT------TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-------------TEE
T ss_pred cCCCeEEEEECC------CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-------------CEE
Confidence 567788888863 22556666688899999999753 1345556788999999998743 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe---cCCeEEEEEecC--cEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR---FRSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~---f~s~V~sV~~s~--~~LaV 214 (627)
+... .+++|++||+++++....+. +...|.++++++ ++|++
T Consensus 68 ~~~~----------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 113 (372)
T 1k8k_C 68 VTCG----------------------------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV 113 (372)
T ss_dssp EEEE----------------------------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE
T ss_pred EEEc----------------------------------CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEE
Confidence 5432 12569999999998776654 556999999986 67877
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEc----CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLT----YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~----~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+. ++.|++||+.+.+....+.. |..+ +.. +++.++...
T Consensus 114 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~-------------i~~-------~~~~~~~~~----------------- 156 (372)
T 1k8k_C 114 GSGSRVISICYFEQENDWWVCKHIKKPIRST-------------VLS-------LDWHPNSVL----------------- 156 (372)
T ss_dssp EETTSSEEEEEEETTTTEEEEEEECTTCCSC-------------EEE-------EEECTTSSE-----------------
T ss_pred EeCCCEEEEEEecCCCcceeeeeeecccCCC-------------eeE-------EEEcCCCCE-----------------
Confidence 76 56899999988774322221 1111 222 233321100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+ ..+..+|.|++
T Consensus 157 ----------------------------------------------------------------l----~~~~~dg~i~~ 168 (372)
T 1k8k_C 157 ----------------------------------------------------------------L----AAGSCDFKCRI 168 (372)
T ss_dssp ----------------------------------------------------------------E----EEEETTSCEEE
T ss_pred ----------------------------------------------------------------E----EEEcCCCCEEE
Confidence 0 01245788888
Q ss_pred EEC------------------CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 370 KDI------------------VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 370 wD~------------------~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
||+ ..++.+..+..|..+|.+++|+|+|.+|++++.||+ |+|||+. ++.
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~-------~~~----- 235 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADAD-------KKM----- 235 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGG-------GTT-----
T ss_pred EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECC-------CCc-----
Confidence 884 467889999999999999999999999999999997 8999986 232
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+..+ .++. ..|.+++|+||+++|+++ .|++|+||++..
T Consensus 236 -------~~~~~-~~~~-~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 236 -------AVATL-ASET-LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp -------EEEEE-ECSS-CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred -------eeEEE-ccCC-CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 45555 3443 359999999999999888 999999999976
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-19 Score=186.89 Aligned_cols=260 Identities=13% Similarity=0.116 Sum_probs=166.3
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
..+.+.|..+.|... ..+.+++.+.++.++|||+..... ...+. .|.+.|..+.+.|.- .
T Consensus 70 ~~h~~~v~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~------------~ 131 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPT-----HPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFN------------T 131 (383)
T ss_dssp CCCSSCEEEEEECSS-----CTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTE------------E
T ss_pred cCCCCCEEEEEECCC-----CCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCC------------C
Confidence 456788999999642 125677777788899999997653 33333 488999999987621 1
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cC---CeEEEEEecC--c
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FR---STVYMVRCSP--R 210 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~---s~V~sV~~s~--~ 210 (627)
.+|+... .+++|++||+++ +.+..+. .. ..|.++++++ +
T Consensus 132 ~~l~s~~----------------------------------~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 176 (383)
T 3ei3_B 132 NQLFVSS----------------------------------IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ 176 (383)
T ss_dssp EEEEEEE----------------------------------TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT
T ss_pred CEEEEEe----------------------------------CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC
Confidence 3454322 137799999996 5566665 22 5799999987 6
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+|+++. ++.|++||+ +++.+.++..|..+ +..+++ .++...
T Consensus 177 ~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~-------------v~~~~~-------~~~~~~----------------- 218 (383)
T 3ei3_B 177 MLATGDSTGRLLLLGL-DGHEIFKEKLHKAK-------------VTHAEF-------NPRCDW----------------- 218 (383)
T ss_dssp EEEEEETTSEEEEEET-TSCEEEEEECSSSC-------------EEEEEE-------CSSCTT-----------------
T ss_pred EEEEECCCCCEEEEEC-CCCEEEEeccCCCc-------------EEEEEE-------CCCCCC-----------------
Confidence 777776 568999999 57778888776543 223333 332100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+ + ..++.||.|+|
T Consensus 219 ----------~-----------l----------------------------------------------~s~~~d~~i~i 231 (383)
T 3ei3_B 219 ----------L-----------M----------------------------------------------ATSSVDATVKL 231 (383)
T ss_dssp ----------E-----------E----------------------------------------------EEEETTSEEEE
T ss_pred ----------E-----------E----------------------------------------------EEEeCCCEEEE
Confidence 0 0 01345778888
Q ss_pred EECCC----CeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCC-CCCCC---------c------
Q 046828 370 KDIVS----RSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKG-RSGSA---------S------ 428 (627)
Q Consensus 370 wD~~s----~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~-~~g~~---------~------ 428 (627)
||+.+ ++.+..+ .|..+|.+++|+| +|++|++++.||+ |+|||+....... ..+.. .
T Consensus 232 wd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 309 (383)
T 3ei3_B 232 WDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP 309 (383)
T ss_dssp EEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECS
T ss_pred EeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCccccccccccccccccccceEEeccC
Confidence 88876 5555555 6888888888888 8888888888886 7888875211000 00000 0
Q ss_pred ---------c-----ccCCCCc--------eeEEEEEeecC-CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 429 ---------Q-----TYDWTSS--------HVHLYKLHRGM-TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 429 ---------~-----~~~~~~~--------~~~l~~l~rG~-t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
. ....... ...+..+ .++ ....|..++|+||+++|++++ ||+|+||+++.
T Consensus 310 ~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l-~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 310 MYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQL-RDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEE-CBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCceEEEecCCcccccCCCCeEEEEecCCCceeeee-cCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 0 0000000 0123333 232 234477789999999999997 89999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=207.72 Aligned_cols=227 Identities=15% Similarity=0.195 Sum_probs=159.6
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.+++.+.++.++|||+..... ...+..|.+.|..+.+.|.. .+|+..+
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~-------------~~l~s~s---------------- 491 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVS-TRRFVGHTKDVLSVAFSLDN-------------RQIVSAS---------------- 491 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTS-------------SCEEEEE----------------
T ss_pred CCEEEEEeCCCcEEEEECCCCcc-eeEEeCCCCCEEEEEEeCCC-------------CEEEEEe----------------
Confidence 46778888899999999998553 44556788999999987643 4454322
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe----cCCeEEEEEecC----cEEEEEe-CCeEEEEeCCCCce
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR----FRSTVYMVRCSP----RIVAVGL-AAQIYCFDALTLES 230 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~----f~s~V~sV~~s~----~~LaV~~-~~~I~i~D~~t~e~ 230 (627)
.+++|+|||+.......... +...|.++++++ ..|+++. ++.|++||+.+.+.
T Consensus 492 ------------------~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 492 ------------------RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp ------------------TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred ------------------CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 13679999987654433322 345799999987 3566665 66899999999998
Q ss_pred eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhh
Q 046828 231 KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSK 310 (627)
Q Consensus 231 ~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k 310 (627)
..++.+|..+ +..+++ .++...
T Consensus 554 ~~~~~~h~~~-------------v~~v~~-------spdg~~-------------------------------------- 575 (694)
T 3dm0_A 554 RSTLAGHTGY-------------VSTVAV-------SPDGSL-------------------------------------- 575 (694)
T ss_dssp EEEECCCSSC-------------EEEEEE-------CTTSSE--------------------------------------
T ss_pred EEEEcCCCCC-------------EEEEEE-------eCCCCE--------------------------------------
Confidence 8888777543 223333 322100
Q ss_pred hhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEE
Q 046828 311 QLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISA 390 (627)
Q Consensus 311 ~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~ 390 (627)
+ .+++.||.|+|||+.+++.+..+..| ..|.+
T Consensus 576 -l----------------------------------------------~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~ 607 (694)
T 3dm0_A 576 -C----------------------------------------------ASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHA 607 (694)
T ss_dssp -E----------------------------------------------EEEETTSBCEEEETTTTEEEECCBCS-SCEEE
T ss_pred -E----------------------------------------------EEEeCCCeEEEEECCCCceEEEecCC-CcEEE
Confidence 0 02347899999999999988887754 68999
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee------------cC-----CcCcEE
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR------------GM-----TSAVIQ 453 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r------------G~-----t~a~I~ 453 (627)
++|+|++.+|++++.++ |+|||+. ++. .+.++.. |. ....|.
T Consensus 608 ~~~sp~~~~l~~~~~~~--i~iwd~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 608 LCFSPNRYWLCAATEHG--IKIWDLE-------SKS------------IVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp EEECSSSSEEEEEETTE--EEEEETT-------TTE------------EEEEECCCCC----------------CCCCEE
T ss_pred EEEcCCCcEEEEEcCCC--EEEEECC-------CCC------------ChhhhccccccccccccccccccCCceeEEee
Confidence 99999999999988664 8999986 221 2222210 00 011278
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+++|||||++|++++.||+|+||++..|
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~~~ 694 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIGRY 694 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEeccCC
Confidence 9999999999999999999999999753
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=186.48 Aligned_cols=181 Identities=10% Similarity=0.041 Sum_probs=137.5
Q ss_pred CcEEEEEECCC-----CceEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcC
Q 046828 179 PTAVRFYSLRS-----HNYVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSG 249 (627)
Q Consensus 179 ~~tV~lwdl~t-----~~~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~ 249 (627)
+++|++||+.+ +.++++++. ...|.++++++ ++|+++. ++.|++||+.+++.+.++.+|..+
T Consensus 39 D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~--------- 109 (319)
T 3frx_A 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD--------- 109 (319)
T ss_dssp TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------
T ss_pred CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc---------
Confidence 47899999864 345777874 45999999987 6777775 668999999999999999887653
Q ss_pred cccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEee
Q 046828 250 VNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSR 329 (627)
Q Consensus 250 ~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~ 329 (627)
+..+ ++.++... +
T Consensus 110 ----v~~~-------~~~~~~~~---------------------------------------l----------------- 122 (319)
T 3frx_A 110 ----VMSV-------DIDKKASM---------------------------------------I----------------- 122 (319)
T ss_dssp ----EEEE-------EECTTSCE---------------------------------------E-----------------
T ss_pred ----EEEE-------EEcCCCCE---------------------------------------E-----------------
Confidence 2223 33321100 0
Q ss_pred eeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC------CCEEEEE
Q 046828 330 YYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS------GTLLVTA 403 (627)
Q Consensus 330 y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd------G~lLaTa 403 (627)
..++.||.|+|||+. ++.+..+.+|...|.+++|+|. +.+|+++
T Consensus 123 -----------------------------~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 123 -----------------------------ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp -----------------------------EEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred -----------------------------EEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 124578999999997 4678889999999999999995 5599999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 404 SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 404 S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
+.||+ |++||+. .+ .....+ .||. ..|.+++|+||+++|++++.||+|+||++.....
T Consensus 173 ~~d~~-i~~wd~~-------~~------------~~~~~~-~~h~-~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 173 GNDKM-VKAWNLN-------QF------------QIEADF-IGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp ETTSC-EEEEETT-------TT------------EEEEEE-CCCC-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred eCCCE-EEEEECC-------cc------------hhheee-cCCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 99998 8999985 22 133333 5765 3599999999999999999999999999986543
Q ss_pred eeec
Q 046828 484 ETVL 487 (627)
Q Consensus 484 ~~~~ 487 (627)
...+
T Consensus 231 ~~~~ 234 (319)
T 3frx_A 231 MYTL 234 (319)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 3333
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-20 Score=187.58 Aligned_cols=255 Identities=11% Similarity=-0.005 Sum_probs=173.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC--ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN--VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~--~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
..+.+.|..+.|... .+.+++.+.++.++|||+..... ....+..|.+.|.++.+.|..
T Consensus 8 ~~h~~~v~~~~~s~~------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------- 68 (342)
T 1yfq_A 8 QAPKDYISDIKIIPS------KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT------------- 68 (342)
T ss_dssp SCCSSCEEEEEEEGG------GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-------------
T ss_pred cCCCCcEEEEEEcCC------CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-------------
Confidence 367788999999752 36677888889999999997551 123334688999999998753
Q ss_pred C-EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEEC-CCCceEEEEe---cCCeEEEEEecC-c
Q 046828 137 P-LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSL-RSHNYVHVLR---FRSTVYMVRCSP-R 210 (627)
Q Consensus 137 p-Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl-~t~~~V~tL~---f~s~V~sV~~s~-~ 210 (627)
. +|++.. .+++|++||+ ++++. ..+. +...|.++++++ +
T Consensus 69 ~~~l~~~~----------------------------------~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~ 113 (342)
T 1yfq_A 69 DLQIYVGT----------------------------------VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDD 113 (342)
T ss_dssp SEEEEEEE----------------------------------TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTT
T ss_pred CcEEEEEc----------------------------------CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCC
Confidence 5 555432 1256999999 88876 4444 566999999985 6
Q ss_pred EEEEEe-CCeEEEEeCCC---------CceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccC
Q 046828 211 IVAVGL-AAQIYCFDALT---------LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLS 280 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t---------~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~ 280 (627)
+|+++. ++.|++||+.+ ++.+.++. ++.. +..+++.+..|+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-------------v~~~~~~~~~l~--------------- 164 (342)
T 1yfq_A 114 KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK-------------IFTMDTNSSRLI--------------- 164 (342)
T ss_dssp EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC-------------EEEEEECSSEEE---------------
T ss_pred EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc-------------eEEEEecCCcEE---------------
Confidence 777665 56899999886 33322221 1110 111222111111
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccC
Q 046828 281 PQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSD 360 (627)
Q Consensus 281 ~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~ 360 (627)
.
T Consensus 165 -------------------------------------------------------------------------------~ 165 (342)
T 1yfq_A 165 -------------------------------------------------------------------------------V 165 (342)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------E
Confidence 1
Q ss_pred CCCCCeEEEEECCC-Ce--EEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 361 TDIAGMVVVKDIVS-RS--VISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 361 ~~~dG~V~IwD~~s-~~--~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+..+|.|++||+.+ +. .......|..+|.+++|+| +|.+|++++.+|+ |+||++...... ....
T Consensus 166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~-~~~~---------- 233 (342)
T 1yfq_A 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDD-YNSS---------- 233 (342)
T ss_dssp EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCS-TTCT----------
T ss_pred EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCcc-cccc----------
Confidence 34678999999998 43 3445567899999999999 9999999999997 899998632000 0001
Q ss_pred eeEEEEEeecCC--------cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 437 HVHLYKLHRGMT--------SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 437 ~~~l~~l~rG~t--------~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
.+..+ +++. ...|.+++|+||+++|++++.||+|+||++........+..|
T Consensus 234 --~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 234 --KRFAF-RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp --TCEEE-ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred --cceee-ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 12222 2332 236999999999999999999999999999765444444444
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-20 Score=197.58 Aligned_cols=239 Identities=13% Similarity=0.164 Sum_probs=171.9
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
+.+.|..+.|| .+.+++.+.++.++|||+++... ...+..|.+.|..+.+. + .+|+
T Consensus 172 h~~~v~~l~~~--------~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~--~-------------~~l~ 227 (435)
T 1p22_A 172 HTGSVLCLQYD--------ERVIITGSSDSTVRVWDVNTGEM-LNTLIHHCEAVLHLRFN--N-------------GMMV 227 (435)
T ss_dssp CSSCEEEEECC--------SSEEEEEETTSCEEEEESSSCCE-EEEECCCCSCEEEEECC--T-------------TEEE
T ss_pred CCCcEEEEEEC--------CCEEEEEcCCCeEEEEECCCCcE-EEEEcCCCCcEEEEEEc--C-------------CEEE
Confidence 55667777773 25677788888899999998653 44555678888777763 1 3444
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceE---EEEe-cCCeEEEEEecCcEEEEEe
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYV---HVLR-FRSTVYMVRCSPRIVAVGL 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V---~tL~-f~s~V~sV~~s~~~LaV~~ 216 (627)
..+ .+++|++||+++++.+ ..+. +...|.++.+..+.|+++.
T Consensus 228 s~s----------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 273 (435)
T 1p22_A 228 TCS----------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 273 (435)
T ss_dssp EEE----------------------------------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred Eee----------------------------------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEe
Confidence 322 1366999999998876 4444 4569999999988888886
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++.+.++.+|..+ +..+++.+++|+.
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~----------------------------- 311 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLNGHKRG-------------IACLQYRDRLVVS----------------------------- 311 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEEETTEEEE-----------------------------
T ss_pred CCCeEEEEECCcCcEEEEEcCCCCc-------------EEEEEeCCCEEEE-----------------------------
Confidence 568999999999999998876543 2223332222222
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
++.||.|+|||+.++
T Consensus 312 -----------------------------------------------------------------g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 312 -----------------------------------------------------------------GSSDNTIRLWDIECG 326 (435)
T ss_dssp -----------------------------------------------------------------EETTSCEEEEETTTC
T ss_pred -----------------------------------------------------------------EeCCCeEEEEECCCC
Confidence 246889999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
+.+..+.+|..+|.+++| +|.+|++++.||+ |+|||+...... . .......+..+ .++. ..|.++
T Consensus 327 ~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~---~-------~~~~~~~~~~~-~~h~-~~v~~l 391 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDP---R-------APAGTLCLRTL-VEHS-GRVFRL 391 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTST---T-------SCTTTTEEEEE-CCCS-SCCCCE
T ss_pred CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCc---c-------ccccchheeec-cCCC-CCeEEE
Confidence 999999999999999999 7999999999998 899998511100 0 00000134444 5655 359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+| |+++|++++.||+|+||++...
T Consensus 392 ~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 392 QF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EE--CSSCEEECCSSSEEEEEC----
T ss_pred Ee--CCCEEEEEeCCCEEEEEECCCC
Confidence 99 8899999999999999999764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-20 Score=205.75 Aligned_cols=264 Identities=14% Similarity=0.092 Sum_probs=170.3
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCc----------eEEeeecCCceEEEEEeeCCCCCCCCCC
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNV----------SELVSRRDDPVTFLQMQPLPAKSDGQEG 131 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~----------~ells~~dG~V~~v~~lp~p~~~~~~D~ 131 (627)
...|..+.|............++.++.|+.++|||+...... ...+..|+++|.++.+.+.
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--------- 277 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--------- 277 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---------
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---------
Confidence 355777787532000012356777888999999999865321 1245567888888888641
Q ss_pred cCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc-eEEEEec-CCeEEEE--Ee
Q 046828 132 FRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN-YVHVLRF-RSTVYMV--RC 207 (627)
Q Consensus 132 f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~-~V~tL~f-~s~V~sV--~~ 207 (627)
.+|+... .+++|++||+++++ ++.++.. ...|.+| .+
T Consensus 278 -----~~lasgs----------------------------------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 278 -----TTVVCGF----------------------------------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp -----SEEEEEE----------------------------------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred -----CeEEEEe----------------------------------CCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence 2444321 24789999999874 4566774 5699999 45
Q ss_pred cC---cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCC
Q 046828 208 SP---RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 208 s~---~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
++ ++||++. +++|+|||+++++.+.++.+|... .+ + .-++|.++...
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---------~~--v-------~~v~fsp~~~~----------- 369 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---------SN--L-------VPVVYCPQIYS----------- 369 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC---------CS--C-------CCEEEETTTTE-----------
T ss_pred CCCCCeEEEEeccCCeEEEEECCCCCccccccccccc---------Cc--c-------cceEeCCCcCe-----------
Confidence 64 5778776 568999999998887777665321 00 1 12344432100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
+ +.++.
T Consensus 370 ----------------------------l----------------------------------------------~s~~~ 375 (524)
T 2j04_B 370 ----------------------------Y----------------------------------------------IYSDG 375 (524)
T ss_dssp ----------------------------E----------------------------------------------EEECS
T ss_pred ----------------------------E----------------------------------------------EEeCC
Confidence 0 02346
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC-C-C-------ccccCCC
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG-S-A-------SQTYDWT 434 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g-~-~-------~~~~~~~ 434 (627)
|++|+|||+.++..+..+.+|..+|.+|+|+|+|++||+|+.||+ |+|||+....-.+-.+ . . .-+..+.
T Consensus 376 d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 454 (524)
T 2j04_B 376 ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIK 454 (524)
T ss_dssp SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEECBCCSS
T ss_pred CCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEEeccCCC
Confidence 789999999999888889999999999999999999999999998 7999964211000000 0 0 0000000
Q ss_pred Cc----------------eeEEEEEeecCCcCcEEEEEEccCC---CEEEEEeCCCeEEEEEcC
Q 046828 435 SS----------------HVHLYKLHRGMTSAVIQDICFSHYS---QWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 435 ~~----------------~~~l~~l~rG~t~a~I~sIaFSpDg---~~Las~S~dgTvhIw~i~ 479 (627)
.. -..+..+ +|+. ..|.+|+|+||+ .+||+++.+|+|+||++.
T Consensus 455 g~~~~~~~~~~~~~~~~~g~~~~~l-~gh~-~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 455 DDKYRIDSSYEVYPLTVNDVSKAKI-DAHG-INITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp SCEEEECCCCCCCC--------------CC-CSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CCeEEccCCceecccccCCcceeee-cCCC-ceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 00 1122333 4554 359999999995 499999999999999986
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-19 Score=189.06 Aligned_cols=226 Identities=15% Similarity=0.185 Sum_probs=173.3
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+.+++.+.++.++|||+.+.. ....+..|.+.|.++.+.+ .+|+...
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~---------------~~l~s~~----------------- 176 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRD---------------NIIISGS----------------- 176 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCC-EEEECCCCSSCEEEEEEET---------------TEEEEEE-----------------
T ss_pred CEEEEEECCCcEEEEECCCCc-EEEEEcCCCCCEEEEEecC---------------CEEEEEe-----------------
Confidence 678888889999999999755 4455667889998888752 3444322
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEcCC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLTYP 238 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p 238 (627)
.+++|++||+++++.++++. +...|.++.++++.|+++. ++.|++||+.+++.+.++.+|.
T Consensus 177 -----------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 177 -----------------TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp -----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred -----------------CCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 13679999999999999998 5569999999998888876 5689999999999998888765
Q ss_pred CCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
.+ +..+++.+++|+
T Consensus 240 ~~-------------v~~~~~~~~~l~----------------------------------------------------- 253 (445)
T 2ovr_B 240 AA-------------VRCVQYDGRRVV----------------------------------------------------- 253 (445)
T ss_dssp SC-------------EEEEEECSSCEE-----------------------------------------------------
T ss_pred cc-------------EEEEEECCCEEE-----------------------------------------------------
Confidence 43 222332222222
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCC
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGT 398 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~ 398 (627)
.+..||.|++||+.+++.+..+.+|..+|.+++| +|.
T Consensus 254 -----------------------------------------~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~ 290 (445)
T 2ovr_B 254 -----------------------------------------SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 290 (445)
T ss_dssp -----------------------------------------EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS
T ss_pred -----------------------------------------EEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCC
Confidence 1346889999999999999999999999999999 899
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 399 lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+|++++.||+ |++||+. ++. .+..+ .++. ..|.+++| ++++|++++.||+|+||++
T Consensus 291 ~l~~~~~d~~-i~i~d~~-------~~~------------~~~~~-~~~~-~~v~~~~~--~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 291 HVVSGSLDTS-IRVWDVE-------TGN------------CIHTL-TGHQ-SLTSGMEL--KDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp EEEEEETTSC-EEEEETT-------TCC------------EEEEE-CCCC-SCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred EEEEEeCCCe-EEEEECC-------CCC------------EEEEE-cCCc-ccEEEEEE--eCCEEEEEeCCCeEEEEEC
Confidence 9999999998 8999986 231 44444 4554 34777766 5779999999999999999
Q ss_pred CCCCCeeeccc
Q 046828 479 TPFGGETVLQI 489 (627)
Q Consensus 479 ~~~gg~~~~~~ 489 (627)
........+..
T Consensus 347 ~~~~~~~~~~~ 357 (445)
T 2ovr_B 347 KTGQCLQTLQG 357 (445)
T ss_dssp TTCCEEEEECS
T ss_pred CCCcEEEEEcc
Confidence 76544444444
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-19 Score=181.84 Aligned_cols=244 Identities=11% Similarity=0.162 Sum_probs=173.8
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ..+.+++.+.++.++|||+.....+ ..+. +.++|..+.+.|.. .+|
T Consensus 72 ~h~~~v~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~-------------~~l 130 (369)
T 3zwl_B 72 GHTGTIWSIDVDC------FTKYCVTGSADYSIKLWDVSNGQCV-ATWK-SPVPVKRVEFSPCG-------------NYF 130 (369)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTTEEEEEETTTCCEE-EEEE-CSSCEEEEEECTTS-------------SEE
T ss_pred hcCCcEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCcEE-EEee-cCCCeEEEEEccCC-------------CEE
Confidence 3566787888853 2367888888889999999986533 3333 77888888887642 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce-----------EEEEe-cCC--eEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-----------VHVLR-FRS--TVYMV 205 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-----------V~tL~-f~s--~V~sV 205 (627)
++.. +.. ...++.|++||+++++. +..+. +.. .|.++
T Consensus 131 ~~~~-~~~----------------------------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 131 LAIL-DNV----------------------------MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp EEEE-CCB----------------------------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred EEec-CCc----------------------------cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 5443 110 01237799999987753 33333 222 89999
Q ss_pred EecC--cEEEEEe-CCeEEEEeCCC-CceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCC
Q 046828 206 RCSP--RIVAVGL-AAQIYCFDALT-LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSP 281 (627)
Q Consensus 206 ~~s~--~~LaV~~-~~~I~i~D~~t-~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~ 281 (627)
++++ ++|+++. ++.|++||+.+ .+.+..+..|..+ +..+ ++.++...
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------v~~~-------~~~~~~~~--------- 232 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS-------------ISDM-------QFSPDLTY--------- 232 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC-------------EEEE-------EECTTSSE---------
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc-------------eeEE-------EECCCCCE---------
Confidence 9987 6777775 56899999999 6777777665432 2223 33321100
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCC
Q 046828 282 QSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDT 361 (627)
Q Consensus 282 q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~ 361 (627)
+ ..+
T Consensus 233 ------------------------------l----------------------------------------------~~~ 236 (369)
T 3zwl_B 233 ------------------------------F----------------------------------------------ITS 236 (369)
T ss_dssp ------------------------------E----------------------------------------------EEE
T ss_pred ------------------------------E----------------------------------------------EEe
Confidence 0 012
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC-------------EEEEEeCCCCCCCCCCCCCc
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN-------------NINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt-------------~I~Vwdi~p~~~~~~~g~~~ 428 (627)
..+|.|+|||+.+++.+..+. |..++.+++|+|+|++|++++.++. .|++||+. .+
T Consensus 237 ~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-------~~--- 305 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI-------FE--- 305 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT-------TC---
T ss_pred cCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC-------CC---
Confidence 468899999999999988888 7889999999999999999999883 37999975 22
Q ss_pred cccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 429 QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 429 ~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+..+ .++. ..|.+++|+||+++|++++.||+|+||+++.
T Consensus 306 ---------~~~~~~-~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 306 ---------EEIGRV-QGHF-GPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ---------CEEEEE-ECCS-SCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ---------cchhhe-eccc-CcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 144444 5664 3599999999999999999999999999975
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-19 Score=191.95 Aligned_cols=238 Identities=13% Similarity=0.162 Sum_probs=176.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. + ..+++.+.++.++|||+++.. ....+..|.+.|.++.+.+.+. ..+|
T Consensus 160 ~h~~~V~~l~~~~----~---~~l~s~s~dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~-----------~~~l 220 (464)
T 3v7d_B 160 GHDGGVWALKYAH----G---GILVSGSTDRTVRVWDIKKGC-CTHVFEGHNSTVRCLDIVEYKN-----------IKYI 220 (464)
T ss_dssp CCSSCEEEEEECS----T---TEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEEESSS-----------CEEE
T ss_pred CCCcCEEEEEEcC----C---CEEEEEeCCCCEEEEECCCCc-EEEEECCCCCccEEEEEecCCC-----------CCEE
Confidence 4667777777742 1 378888889999999999754 4556667899999999987652 1455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce-----------------------EEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-----------------------VHVL 196 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-----------------------V~tL 196 (627)
+... .+++|++||+++++. +..+
T Consensus 221 ~s~s----------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 221 VTGS----------------------------------RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EEEE----------------------------------TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EEEc----------------------------------CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 4322 136699999998764 3444
Q ss_pred e-cCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcC
Q 046828 197 R-FRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLP 274 (627)
Q Consensus 197 ~-f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~ 274 (627)
. +...|.++....++|+++. ++.|++||+.+++.+.++.+|..+ +.. +++.++...
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~~-- 324 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-------------IYS-------TIYDHERKR-- 324 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEE-------EEEETTTTE--
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------EEE-------EEEcCCCCE--
Confidence 4 3458888888888888876 558999999999998888766443 222 333322100
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcc
Q 046828 275 NTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRN 354 (627)
Q Consensus 275 ~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~ 354 (627)
+
T Consensus 325 -------------------------------------l------------------------------------------ 325 (464)
T 3v7d_B 325 -------------------------------------C------------------------------------------ 325 (464)
T ss_dssp -------------------------------------E------------------------------------------
T ss_pred -------------------------------------E------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 355 ASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 355 ~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
..++.||.|+|||+.+++.+..+.+|..+|.+++|+ +.+|++++.||+ |+|||+. ++
T Consensus 326 ----~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~-------~~--------- 382 (464)
T 3v7d_B 326 ----ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDAN-------DY--------- 382 (464)
T ss_dssp ----EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETT-------TC---------
T ss_pred ----EEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECC-------CC---------
Confidence 023468999999999999999999999999999998 689999999998 8999986 22
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
....... ....+..++|++|+++|++++ ||+|+||++...
T Consensus 383 ---~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 383 ---SRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp ---CEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred ---ceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 1344443 233578899999999999998 899999999763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=200.61 Aligned_cols=332 Identities=11% Similarity=0.031 Sum_probs=200.7
Q ss_pred cEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEee---ecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 64 QVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVS---RRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 64 ~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells---~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
.|..+.|... ..+.+++.+.++.++|||+.....+.++.. .|.++|..+.+. .. .+|+
T Consensus 208 ~v~~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-------------~~l~ 268 (615)
T 1pgu_A 208 FVRDVEFSPD-----SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-------------QKFA 268 (615)
T ss_dssp CEEEEEECST-----TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-------------SEEE
T ss_pred eEEEEEECCC-----CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-------------CEEE
Confidence 6878888531 136777788899999999998664444435 788888888876 32 4554
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-----CeEEEEEec-CcEEEE
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-----STVYMVRCS-PRIVAV 214 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-----s~V~sV~~s-~~~LaV 214 (627)
... .+++|++||+++++.+.++..+ ..+.++.++ .+.|++
T Consensus 269 ~~~----------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 269 TVG----------------------------------ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp EEE----------------------------------TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred EEc----------------------------------CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 432 1367999999999999999876 577888774 466766
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCC-CCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQ-SLTPPSVSPS 292 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q-~~t~~~~s~~ 292 (627)
+. ++.|++||+.+++.+..+.+|..+ +..+++ |. |+.++.+..+.+|.....+ .+..+..+..
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~ 379 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKG-------------ITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLD 379 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSC-------------EEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEE
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCC-------------EEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEE
Confidence 65 668999999998888888776554 445666 66 7777666655554321000 0000000000
Q ss_pred CCCCCC--------cccchhhhhhhhhh--hcceeecCCcce-------eEEeeeeccccCCCCCC-----CccC-CCcc
Q 046828 293 TSPSNG--------NLMARYAVESSKQL--AAGLINLGDMGY-------KTLSRYYQDFIPDGSSS-----PVSS-NSSW 349 (627)
Q Consensus 293 ~s~s~g--------s~v~~~a~~~~k~l--~~gl~~lg~~g~-------~~~s~y~~~~~p~g~~~-----~~s~-~~~~ 349 (627)
. +... ..+..|..+..+.. ...+ .+...+. ..+. .|. .+++... .... ...+
T Consensus 380 ~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~ 454 (615)
T 1pgu_A 380 N-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVA-SANNDGFTAVLTNDDDLL-ILQ--SFTGDIIKSVRLNSPGSAVSL 454 (615)
T ss_dssp C-CSTTCCEEEETTTEEEETTEEEEECSSCEEEE-EECSSSEEEEEETTSEEE-EEE--TTTCCEEEEEECSSCEEEEEE
T ss_pred E-CCCcEEEEEeCCCCEEEEEcccCcccCCceEE-EEcCCCCEEEEeCCCceE-EEe--ccCCceeeecccCCCceEEEE
Confidence 0 0000 00100100000000 0000 0000000 0000 000 0000000 0000 0000
Q ss_pred ccCcccccccCCCC-CCeEEEEECCCCeEE-EEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCC
Q 046828 350 KAGRNASHSSDTDI-AGMVVVKDIVSRSVI-SQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSA 427 (627)
Q Consensus 350 ~~g~~~~~~~~~~~-dG~V~IwD~~s~~~l-~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~ 427 (627)
. +.. ...+.. +|.|++||+.+++.. ..+..|..+|.+++|+|+|++|++++.||+ |+|||+. ++
T Consensus 455 ~-~~~---l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~-------~~-- 520 (615)
T 1pgu_A 455 S-QNY---VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQ-------SR-- 520 (615)
T ss_dssp C-SSE---EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TT--
T ss_pred c-CCE---EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCC-------CC--
Confidence 0 111 123456 999999999987765 778899999999999999999999999998 8999986 23
Q ss_pred ccccCCCCceeEEEEEeecCCcCcEEEEEEcc----------CCCEEEEEeCCCeEEEEEcCCC-CCeeeccccccc
Q 046828 428 SQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH----------YSQWIAIVSSRGTCHIFVLTPF-GGETVLQIQNSH 493 (627)
Q Consensus 428 ~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp----------Dg~~Las~S~dgTvhIw~i~~~-gg~~~~~~h~s~ 493 (627)
..+..+ .+.+...|.+++|+| |+++||+++.||+|+||++... .....+..|...
T Consensus 521 ----------~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~ 586 (615)
T 1pgu_A 521 ----------EVKTSR-WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 586 (615)
T ss_dssp ----------EEEECC-SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred ----------cceeEe-ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccc
Confidence 234443 452235699999999 9999999999999999999875 334445556443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-20 Score=197.25 Aligned_cols=108 Identities=12% Similarity=0.170 Sum_probs=80.4
Q ss_pred CCCCCeEEEEECCCCeE----EEEeccCCC------------CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 046828 361 TDIAGMVVVKDIVSRSV----ISQFRAHTS------------PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRS 424 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~----l~~~~aH~~------------~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~ 424 (627)
+..||.|+|||+.+++. +..+..|.. +|.+++|+|+|++|++++. |+ |+|||+...
T Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~------ 316 (447)
T 3dw8_B 245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNME------ 316 (447)
T ss_dssp EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCC------
T ss_pred EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCC------
Confidence 45789999999999886 788999886 8999999999999999999 86 899998621
Q ss_pred CCCccccCCCCceeEEEEEeecCCc-----------C---cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 425 GSASQTYDWTSSHVHLYKLHRGMTS-----------A---VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 425 g~~~~~~~~~~~~~~l~~l~rG~t~-----------a---~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
+. .+..+ +++.. . .+..++|+||+++|++++.||+|+||++... ....+..|
T Consensus 317 ~~------------~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~ 382 (447)
T 3dw8_B 317 NR------------PVETY-QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEAS 382 (447)
T ss_dssp SS------------CSCCE-ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC-CEEEEECC
T ss_pred cc------------cccee-eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC-cceeeeec
Confidence 11 11112 33321 0 1345999999999999999999999999863 33344444
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-19 Score=189.11 Aligned_cols=271 Identities=10% Similarity=0.023 Sum_probs=167.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee---c
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH---V 157 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~---~ 157 (627)
+.|++.+.+..+.+|+..++...+.+..++-..+.++++.|.|... .|+.|..+.-. .+.+..+ .
T Consensus 54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~~--~~~v~sla~sp 121 (356)
T 2w18_A 54 EPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVY----------NLVCVALGNLE--IREIRALFCSS 121 (356)
T ss_dssp EEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCC----------SCEEEEECSSS--EEEEEEECC--
T ss_pred ccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCccc----------ceeeeeecccc--ccceEEEEECC
Confidence 5689999999999999999755556666665556678888888332 33333221100 0000000 0
Q ss_pred c----CcccccCCC-------CCCCCCC--CCcCCcEEEEEEC-CCCceEEEEecCC-eEEEEEecC-----cEEEEEe-
Q 046828 158 G----RDGLVRDGY-------DEPQPGN--VAMSPTAVRFYSL-RSHNYVHVLRFRS-TVYMVRCSP-----RIVAVGL- 216 (627)
Q Consensus 158 ~----~~~~~~~g~-------~~~~~~~--~~~~~~tV~lwdl-~t~~~V~tL~f~s-~V~sV~~s~-----~~LaV~~- 216 (627)
+ +.-....|. .+.+... ....+.+|++|++ .+|+.+.++..++ .|..++|++ .+||++.
T Consensus 122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~ 201 (356)
T 2w18_A 122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI 201 (356)
T ss_dssp ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC
Confidence 0 000000000 0000000 0113688999999 5588888887554 677777765 7888865
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
|++|+|||+.|+++++++.++.... ..+..++++| +.++....+..
T Consensus 202 D~TIkIWDl~TGk~l~tL~g~~~~v----------~~v~~vafSpdG~~lvs~s~~~~---------------------- 249 (356)
T 2w18_A 202 MNNIVIWNLKTGQLLKKMHIDDSYQ----------ASVCHKAYSEMGLLFIVLSHPCA---------------------- 249 (356)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-------------CCCEEEEEEETTEEEEEEC--------------------------
T ss_pred CCcEEEEECCCCcEEEEEcCCCcce----------eeeEEEEECCCCCEEEEeccCCC----------------------
Confidence 5689999999999999998754320 0022223332 33333221000
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
.| ..++++.|++|++||..+
T Consensus 250 -----------------------------------------------------~w-------~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 250 -----------------------------------------------------KE-------SESLRSPVFQLIVINPKT 269 (356)
T ss_dssp --------------------------------------------------------------------CCEEEEEEETTT
T ss_pred -----------------------------------------------------cc-------eeeccCCCcEEEEEECCC
Confidence 00 001456899999999999
Q ss_pred CeEEEEe-----ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 375 RSVISQF-----RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 375 ~~~l~~~-----~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
++.+..+ .+|...+.+..+ +|.++|+++.||+ |+|||+. +|. .+..| +||+.
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~-------tGk------------~l~tL-~gH~~ 326 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLL-------LGQ------------CTALL-PPVSD 326 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETT-------TCS------------EEEEE-CCC--
T ss_pred CEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECC-------CCc------------EEEEe-cCCCC
Confidence 9987765 377666544444 4999999999998 8999996 442 56666 57765
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
..+..++|||||++||+++.|+||+||++
T Consensus 327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 55667999999999999999999999986
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-19 Score=204.03 Aligned_cols=249 Identities=14% Similarity=0.099 Sum_probs=187.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ..+.+++.+.++.++|||+.+.. ....+..|+++|+++.+.|.. .+|
T Consensus 11 ~h~~~v~~i~~sp------~~~~la~~~~~g~v~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-------------~~l 70 (814)
T 3mkq_A 11 NRSDRVKGIDFHP------TEPWVLTTLYSGRVEIWNYETQV-EVRSIQVTETPVRAGKFIARK-------------NWI 70 (814)
T ss_dssp EECSCEEEEEECS------SSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEEEGGG-------------TEE
T ss_pred cCCCceEEEEECC------CCCEEEEEeCCCEEEEEECCCCc-eEEEEecCCCcEEEEEEeCCC-------------CEE
Confidence 3567888898864 23667777777789999998854 455666789999999998753 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~ 216 (627)
++.. .+++|++||+++++.+.++. +...|.+++|++ +.|+++.
T Consensus 71 ~~~~----------------------------------~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 116 (814)
T 3mkq_A 71 IVGS----------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (814)
T ss_dssp EEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEe----------------------------------CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc
Confidence 5432 13679999999999999998 566999999997 5777776
Q ss_pred -CCeEEEEeCCCC-ceeEEEEcCCCCCCCCCCCcCcccccceeeEcC---ceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTL-ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP---RWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 217 -~~~I~i~D~~t~-e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~---r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
++.|++||+.+. +....+.+|..+ +..++++| ++|+
T Consensus 117 ~dg~i~vw~~~~~~~~~~~~~~~~~~-------------v~~~~~~p~~~~~l~-------------------------- 157 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNPKDPSTFA-------------------------- 157 (814)
T ss_dssp TTSEEEEEEGGGTSEEEEEEECCSSC-------------EEEEEEETTEEEEEE--------------------------
T ss_pred CCCEEEEEECCCCceEEEEEcCCCCc-------------EEEEEEEcCCCCEEE--------------------------
Confidence 458999999987 455566665443 22233322 1111
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
.+..+|.|++||
T Consensus 158 --------------------------------------------------------------------~~~~dg~v~vwd 169 (814)
T 3mkq_A 158 --------------------------------------------------------------------SGCLDRTVKVWS 169 (814)
T ss_dssp --------------------------------------------------------------------EEETTSEEEEEE
T ss_pred --------------------------------------------------------------------EEeCCCeEEEEE
Confidence 134689999999
Q ss_pred CCCCeEEEEeccCC-CCeEEEEECC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 372 IVSRSVISQFRAHT-SPISALCFDR--SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 372 ~~s~~~l~~~~aH~-~~Is~laFsp--dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
+.+++....+..|. .+|.+++|+| +|.+|++++.+|+ |++||+. ++ ..+..+ +++.
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~-------~~------------~~~~~~-~~~~ 228 (814)
T 3mkq_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQ-------TK------------SCVATL-EGHM 228 (814)
T ss_dssp TTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETT-------TT------------EEEEEE-ECCS
T ss_pred CCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECC-------CC------------cEEEEE-cCCC
Confidence 99888777777655 8999999999 9999999999997 8999985 23 234444 5554
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
..|.+++|+||+++|++++.||+|++|++........+..|.
T Consensus 229 -~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 229 -SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp -SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred -CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 359999999999999999999999999998765555555553
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-20 Score=193.80 Aligned_cols=233 Identities=15% Similarity=0.149 Sum_probs=166.9
Q ss_pred EeccCcEEEEecCCCCCc---eEEeeecCCceEEEEEee-CCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcc
Q 046828 86 LGYSNGFQVLDVEDATNV---SELVSRRDDPVTFLQMQP-LPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDG 161 (627)
Q Consensus 86 ~Gy~~G~qVWdv~~~~~~---~ells~~dG~V~~v~~lp-~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~ 161 (627)
.+.++.++|||++..+.. ...+..|.++|..+.+.| .. .+|+...
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-------------~~l~s~s------------------ 101 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-------------NVIASGS------------------ 101 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-------------TEEEEEE------------------
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-------------CEEEEEe------------------
Confidence 355778999999775422 234567899999999876 32 4665432
Q ss_pred cccCCCCCCCCCCCCcCCcEEEEEECCCC-------ceEEEEe-cCCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCc
Q 046828 162 LVRDGYDEPQPGNVAMSPTAVRFYSLRSH-------NYVHVLR-FRSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLE 229 (627)
Q Consensus 162 ~~~~g~~~~~~~~~~~~~~tV~lwdl~t~-------~~V~tL~-f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e 229 (627)
.+++|+|||+.++ +.+.++. +...|.+|++++ ++|+++. ++.|++||+.+++
T Consensus 102 ----------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 102 ----------------EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp ----------------TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred ----------------CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 1378999999998 6788887 556999999996 4777775 5689999999999
Q ss_pred eeEEE--EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 230 SKFSV--LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 230 ~~~tl--~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.+.++ ..|..+ +. .+++.++...
T Consensus 166 ~~~~~~~~~~~~~-------------v~-------~~~~~~~~~~----------------------------------- 190 (402)
T 2aq5_A 166 AVLTLGPDVHPDT-------------IY-------SVDWSRDGAL----------------------------------- 190 (402)
T ss_dssp EEEEECTTTCCSC-------------EE-------EEEECTTSSC-----------------------------------
T ss_pred ccEEEecCCCCCc-------------eE-------EEEECCCCCE-----------------------------------
Confidence 88887 444432 22 2333332100
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEe-ccCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQF-RAHTS 386 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~-~aH~~ 386 (627)
+ ..+..||.|+|||+.+++.+..+ ..|..
T Consensus 191 ----l----------------------------------------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 220 (402)
T 2aq5_A 191 ----I----------------------------------------------CTSCRDKRVRVIEPRKGTVVAEKDRPHEG 220 (402)
T ss_dssp ----E----------------------------------------------EEEETTSEEEEEETTTTEEEEEEECSSCS
T ss_pred ----E----------------------------------------------EEEecCCcEEEEeCCCCceeeeeccCCCC
Confidence 0 02346899999999999999999 78987
Q ss_pred C-eEEEEECCCCCEEEEE---eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 387 P-ISALCFDRSGTLLVTA---SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 387 ~-Is~laFspdG~lLaTa---S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
. +.+++|+|+|++|+++ +.+|+ |+|||+.. +. .......+ .+ ...|.+++|+||++
T Consensus 221 ~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~-------~~---------~~~~~~~~--~~-~~~v~~~~~s~~~~ 280 (402)
T 2aq5_A 221 TRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKH-------LE---------EPLSLQEL--DT-SSGVLLPFFDPDTN 280 (402)
T ss_dssp SSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTB-------CS---------SCSEEEEC--CC-CSSCEEEEEETTTT
T ss_pred CcceEEEEcCCCcEEEEeccCCCCce-EEEEcCcc-------cc---------CCceEEec--cC-CCceeEEEEcCCCC
Confidence 6 9999999999999999 78887 89999861 11 00122222 22 23589999999999
Q ss_pred EEEEE-eCCCeEEEEEcCCCCC-eeecccc
Q 046828 463 WIAIV-SSRGTCHIFVLTPFGG-ETVLQIQ 490 (627)
Q Consensus 463 ~Las~-S~dgTvhIw~i~~~gg-~~~~~~h 490 (627)
+|+++ +.||+|+||++..... ...+..|
T Consensus 281 ~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 281 IVYLCGKGDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp EEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence 99755 4799999999987553 3344444
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=209.56 Aligned_cols=233 Identities=12% Similarity=0.028 Sum_probs=158.7
Q ss_pred EEEEeccCcEEEEecCCCCCce---EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 83 VLLLGYSNGFQVLDVEDATNVS---ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 83 vl~~Gy~~G~qVWdv~~~~~~~---ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
+...++++.++|||++...... ..+..|.+.|..+++.|... +.....+||.++
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~~~~~LAs~s---------------- 232 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCH-------APHLVGCLSFVS---------------- 232 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCC-------CSSSSCEEEEEE----------------
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCC-------CCCCCceEEEEe----------------
Confidence 4445677889999998754221 22455678899999987631 111125666433
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCce-----------EEEEec-CCeEEEEEecC-cEEEEEe-CCeEEEEeC
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-----------VHVLRF-RSTVYMVRCSP-RIVAVGL-AAQIYCFDA 225 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-----------V~tL~f-~s~V~sV~~s~-~~LaV~~-~~~I~i~D~ 225 (627)
.+++|+|||+.+++. +.++.. ...|.+|+|++ ..|++|. +++|++||+
T Consensus 233 ------------------~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~ 294 (524)
T 2j04_B 233 ------------------QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDL 294 (524)
T ss_dssp ------------------TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred ------------------cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEEC
Confidence 136799999987642 245653 45999999976 6777775 568999999
Q ss_pred CCCce-eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchh
Q 046828 226 LTLES-KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARY 304 (627)
Q Consensus 226 ~t~e~-~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~ 304 (627)
.+++. ..++.+|..+ +..+++ ++.++.. .+
T Consensus 295 ~~~~~~~~~~~~H~~~-------------V~sv~~-----~~s~~g~---------------------------~~---- 325 (524)
T 2j04_B 295 TDPEVPSFYDQVHDSY-------------ILSVST-----AYSDFED---------------------------TV---- 325 (524)
T ss_dssp TBCSSCSEEEECSSSC-------------EEEEEE-----ECCTTSC---------------------------CE----
T ss_pred CCCCCceEEeeccccc-------------EEEEEE-----EcCCCCC---------------------------eE----
Confidence 98754 3456666543 222210 2221100 00
Q ss_pred hhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC
Q 046828 305 AVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH 384 (627)
Q Consensus 305 a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH 384 (627)
+ ++++.||+|+|||+.+++.+..+.+|
T Consensus 326 -------------------------------------------------l----aS~S~D~tvklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 326 -------------------------------------------------V----STVAVDGYFYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp -------------------------------------------------E----EEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred -------------------------------------------------E----EEeccCCeEEEEECCCCCcccccccc
Confidence 0 13457999999999998877777777
Q ss_pred CC--CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 385 TS--PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 385 ~~--~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
.. .|.+|+|+|+|..||+++.|++ |+|||+. ++. .+..+ .||+ ..|.+|+||||++
T Consensus 353 ~~~~~v~~v~fsp~~~~l~s~~~d~t-v~lwd~~-------~~~------------~~~~l-~gH~-~~V~sva~Sp~g~ 410 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYSYIYSDGASS-LRAVPSR-------AAF------------AVHPL-VSRE-TTITAIGVSRLHP 410 (524)
T ss_dssp CSCCSCCCEEEETTTTEEEEECSSSE-EEEEETT-------CTT------------CCEEE-EECS-SCEEEEECCSSCC
T ss_pred cccCcccceEeCCCcCeEEEeCCCCc-EEEEECc-------ccc------------cceee-ecCC-CceEEEEeCCCCC
Confidence 64 5889999999999999999987 8999986 221 23334 4665 4699999999999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 046828 463 WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 463 ~Las~S~dgTvhIw~i~~ 480 (627)
+||+++.||+|+||++..
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 411 MVLAGSADGSLIITNAAR 428 (524)
T ss_dssp BCEEEETTTEEECCBSCS
T ss_pred eEEEEECCCEEEEEechH
Confidence 999999999999999753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-19 Score=196.75 Aligned_cols=252 Identities=14% Similarity=0.101 Sum_probs=184.3
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC---CceEEeeecCCc-eEEEEEee--CCCCCCCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT---NVSELVSRRDDP-VTFLQMQP--LPAKSDGQE 130 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~---~~~ells~~dG~-V~~v~~lp--~p~~~~~~D 130 (627)
....++..|..+.|... .+.|+.|.++.++|||+++.. +....+..|.+. |.++.+.| ..
T Consensus 13 ~~~~~~~~v~~~~~spd-------g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~------- 78 (615)
T 1pgu_A 13 QPSTQRNFTTHLSYDPT-------TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS------- 78 (615)
T ss_dssp CCCCCTTCCCCCEEETT-------TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-------
T ss_pred CCCCccCceeEEEECCC-------CCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC-------
Confidence 34556788888888742 335555668899999999751 345566678888 99999987 43
Q ss_pred CcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC--------ceEEEEe-cCCe
Q 046828 131 GFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH--------NYVHVLR-FRST 201 (627)
Q Consensus 131 ~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~--------~~V~tL~-f~s~ 201 (627)
.+|++.. .+++|++||+.++ +.+.++. +...
T Consensus 79 ------~~l~s~~----------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 79 ------QYLCSGD----------------------------------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp ------CEEEEEE----------------------------------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred ------CEEEEec----------------------------------CCCEEEEEeCCCCcccccccccccchhhccccc
Confidence 4565432 1367999999865 6677777 5669
Q ss_pred EEEEEecC--cEEEEEeCC-----eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcC
Q 046828 202 VYMVRCSP--RIVAVGLAA-----QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLP 274 (627)
Q Consensus 202 V~sV~~s~--~~LaV~~~~-----~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~ 274 (627)
|.+++|++ ++|+++..+ .|++|| +++.+..+.+|..+ +.. +++.++...
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~~-- 174 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR-------------INA-------CHLKQSRPM-- 174 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC-------------EEE-------EEECSSSSC--
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc-------------EEE-------EEECCCCCc--
Confidence 99999997 677777654 688888 56666666655432 222 333332100
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcc
Q 046828 275 NTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRN 354 (627)
Q Consensus 275 ~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~ 354 (627)
. +
T Consensus 175 -------------------------~-----------------------------------------------------l 176 (615)
T 1pgu_A 175 -------------------------R-----------------------------------------------------S 176 (615)
T ss_dssp -------------------------E-----------------------------------------------------E
T ss_pred -------------------------E-----------------------------------------------------E
Confidence 0 0
Q ss_pred cccccCCCCCCeEEEEECCCCeEEEEeccCCC---CeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 355 ASHSSDTDIAGMVVVKDIVSRSVISQFRAHTS---PISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 355 ~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~---~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
..+..||.|+|||+.+++.+..+..|.. +|.+++|+|+ |++|++++.+|+ |+|||+. ++
T Consensus 177 ----~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~-------~~----- 239 (615)
T 1pgu_A 177 ----MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGK-------SG----- 239 (615)
T ss_dssp ----EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETT-------TC-----
T ss_pred ----EEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECC-------CC-----
Confidence 0234689999999999999999999999 9999999999 999999999998 7999985 33
Q ss_pred cCCCCceeEEEEEee---cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 431 YDWTSSHVHLYKLHR---GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 431 ~~~~~~~~~l~~l~r---G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
..+..+.. ++. ..|.+++|+ |+++|++++.||+|++|++........+..|
T Consensus 240 -------~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 240 -------EFLKYIEDDQEPVQ-GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp -------CEEEECCBTTBCCC-SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred -------CEeEEecccccccC-CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 24555534 554 469999999 9999999999999999999865444444433
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-21 Score=198.95 Aligned_cols=239 Identities=15% Similarity=0.108 Sum_probs=155.5
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
++.|..+.|.. +.+.+++.+.++.++|||+.... .....+..|.+.|..+.+.|.. .+|+
T Consensus 11 ~~~v~~~~~s~------~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------------~~l~ 71 (377)
T 3dwl_C 11 PKPSYEHAFNS------QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------------NRIV 71 (377)
T ss_dssp SSCCSCCEECS------SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------------CCEE
T ss_pred CCcEEEEEECC------CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------------CEEE
Confidence 45666677753 23556666688899999999753 3445566788999999987653 4555
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc---eEEEEe-cCCeEEEEEecC--cEEEE
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN---YVHVLR-FRSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~---~V~tL~-f~s~V~sV~~s~--~~LaV 214 (627)
... .+++|++||+++++ .+..+. +...|.++++++ ++|++
T Consensus 72 s~s----------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 117 (377)
T 3dwl_C 72 TCS----------------------------------QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117 (377)
T ss_dssp EEE----------------------------------TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEE
T ss_pred EEe----------------------------------CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEE
Confidence 432 12569999999988 455554 567999999986 56776
Q ss_pred Ee-CCeEEEEeCCCCce---eEEEEc-CCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLES---KFSVLT-YPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~---~~tl~~-~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
+. ++.|++||+.+.+. ...+.. |..+ +..+++.| ++||+
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~~~~~l~~--------------------- 163 (377)
T 3dwl_C 118 GSGARVISVCYFEQENDWWVSKHLKRPLRST-------------ILSLDWHPNNVLLAA--------------------- 163 (377)
T ss_dssp EESSSCEEECCC-----CCCCEEECSSCCSC-------------EEEEEECTTSSEEEE---------------------
T ss_pred EecCCeEEEEEECCcccceeeeEeecccCCC-------------eEEEEEcCCCCEEEE---------------------
Confidence 65 56899999998873 555554 4332 22333322 22222
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
+..||.|
T Consensus 164 -------------------------------------------------------------------------~~~d~~i 170 (377)
T 3dwl_C 164 -------------------------------------------------------------------------GCADRKA 170 (377)
T ss_dssp -------------------------------------------------------------------------EESSSCE
T ss_pred -------------------------------------------------------------------------EeCCCEE
Confidence 2356778
Q ss_pred EEEECC------------------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc
Q 046828 368 VVKDIV------------------SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 368 ~IwD~~------------------s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
+|||+. .++.+..+ .|..+|.+++|+|+|++||+++.||+ |+|||+. ++..
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~-------~~~~-- 239 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPS-------APEQ-- 239 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEEC-------STTS--
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECC-------CCCC--
Confidence 888874 34567777 99999999999999999999999997 8999986 2210
Q ss_pred ccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 430 TYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
....+..+ .++. ..|.+++|+||+++|+++++++.+ +|+...
T Consensus 240 ------~~~~~~~~-~~~~-~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 240 ------PPRALITV-KLSQ-LPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp ------CEEECCCE-ECSS-SCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred ------cceeeEee-cCCC-CceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 00012333 4554 359999999999999999877766 777664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-19 Score=215.11 Aligned_cols=355 Identities=16% Similarity=0.150 Sum_probs=219.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. .++.+++++.++.++|||+.+...+ ..+..|.+.|.++.+.|.. .+|
T Consensus 613 ~h~~~v~~~~~s~------~~~~l~s~~~d~~i~vw~~~~~~~~-~~~~~h~~~v~~~~~s~~~-------------~~l 672 (1249)
T 3sfz_A 613 PHTDAVYHACFSQ------DGQRIASCGADKTLQVFKAETGEKL-LDIKAHEDEVLCCAFSSDD-------------SYI 672 (1249)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTS-------------SEE
T ss_pred cccccEEEEEECC------CCCEEEEEeCCCeEEEEECCCCCEE-EEeccCCCCEEEEEEecCC-------------CEE
Confidence 4667788888863 2367888888889999999986643 4455788999999987643 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC----cEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP----RIVAV 214 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~----~~LaV 214 (627)
+..+ .+++|++||+++++.+.++. +...|.+++|++ .++++
T Consensus 673 ~s~~----------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 673 ATCS----------------------------------ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp EEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred EEEe----------------------------------CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence 5432 13679999999999999998 455999999986 36777
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCC--------CC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSP--------QS 283 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~--------q~ 283 (627)
+. ++.|++||+.+++.+.++.+|..+ +..++++| ++|+.++.+..+.+|..... ..
T Consensus 719 g~~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 785 (1249)
T 3sfz_A 719 GSNDFFLKLWDLNQKECRNTMFGHTNS-------------VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785 (1249)
T ss_dssp EETTSCEEEEETTSSSEEEEECCCSSC-------------EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred EeCCCeEEEEECCCcchhheecCCCCC-------------EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccc
Confidence 65 558999999999999998887654 44566665 78999888777765532110 00
Q ss_pred C-----CC------CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCC--CCCccCCCccc
Q 046828 284 L-----TP------PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGS--SSPVSSNSSWK 350 (627)
Q Consensus 284 ~-----t~------~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~--~~~~s~~~~~~ 350 (627)
. .+ ...+...+|.+..++.. . ...+ .++.+.... .+..+... ..+. ...++++
T Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~---~~~v--~~~d~~~~~--~~~~~~~~--~~~~v~~~~~sp~---- 851 (1249)
T 3sfz_A 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-A---KNKV--LLFDIHTSG--LLAEIHTG--HHSTIQYCDFSPY---- 851 (1249)
T ss_dssp CC--------CCCCCBCCCCBCTTSSEEEEE-E---TTEE--EEEETTTCC--EEEEEECS--SSSCCCEEEECSS----
T ss_pred cccccCCccccccceEEEEEECCCCCEEEEE-c---CCcE--EEEEecCCC--ceeEEcCC--CCCceEEEEEcCC----
Confidence 0 00 00111122222211110 0 0000 000000000 00000000 0000 0011111
Q ss_pred cCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc-
Q 046828 351 AGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ- 429 (627)
Q Consensus 351 ~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~- 429 (627)
+.+ ...+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|++|++++.||+ |++||+....... .-....
T Consensus 852 -~~~---l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~-~~~~~~~ 925 (1249)
T 3sfz_A 852 -DHL---AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNS-AIVLKQE 925 (1249)
T ss_dssp -TTE---EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCC-SSSEEEE
T ss_pred -CCE---EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceee-eecccce
Confidence 111 124568999999999999999999999999999999999999999999998 7999974110000 000000
Q ss_pred -------------ccCCCCceeEEEEEeec----CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 430 -------------TYDWTSSHVHLYKLHRG----MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 430 -------------~~~~~~~~~~l~~l~rG----~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
..+.... ..+.....+ .....|.+++|+||++++++++.+|+|++|++........+..|..
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~ 1004 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRG-LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSS-EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS
T ss_pred eeEEEcCCCcEEEEecCCcc-eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC
Confidence 0000000 011111000 0124599999999999999999999999999987766666777766
Q ss_pred cccCCCCCCC
Q 046828 493 HVDRPTLSPV 502 (627)
Q Consensus 493 ~v~~~~~~p~ 502 (627)
.+....+.|.
T Consensus 1005 ~v~~l~~s~d 1014 (1249)
T 3sfz_A 1005 AVRHIQFTAD 1014 (1249)
T ss_dssp CCCCEEECSS
T ss_pred ceEEEEECCC
Confidence 5544444443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-20 Score=198.53 Aligned_cols=261 Identities=11% Similarity=0.098 Sum_probs=163.3
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEE-eeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSEL-VSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~el-ls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+.+.|..+.|. +.....|++++.++.++|||++.......+ +..|.++|..|++.|.- + .+|
T Consensus 118 ~~~~V~~l~~~-----P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-------~-----~~l 180 (435)
T 4e54_B 118 FDRRATSLAWH-----PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-------T-----NQF 180 (435)
T ss_dssp CSSCEEEEEEC-----SSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-------T-----TEE
T ss_pred CCCCEEEEEEe-----CCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-------C-----CEE
Confidence 44568888884 222245666677888999999876533222 23588999999997641 1 344
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC---CeEEEEEecC--cEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR---STVYMVRCSP--RIVAV 214 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~---s~V~sV~~s~--~~LaV 214 (627)
+.++ .+++|+|||++++........+ ..+.++++++ ++|++
T Consensus 181 ~s~s----------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (435)
T 4e54_B 181 YASS----------------------------------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT 226 (435)
T ss_dssp EEEC----------------------------------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEE
T ss_pred EEEe----------------------------------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEE
Confidence 4321 2367999999876554333332 3578899986 68888
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+. ++.|++||+.+ +.+.++.+|..+ +.. +++.+....
T Consensus 227 g~~dg~i~~wd~~~-~~~~~~~~h~~~-------------v~~-------v~~~p~~~~--------------------- 264 (435)
T 4e54_B 227 GDNVGNVILLNMDG-KELWNLRMHKKK-------------VTH-------VALNPCCDW--------------------- 264 (435)
T ss_dssp ECSSSBEEEEESSS-CBCCCSBCCSSC-------------EEE-------EEECTTCSS---------------------
T ss_pred EeCCCcEeeeccCc-ceeEEEecccce-------------EEe-------eeecCCCce---------------------
Confidence 75 56899999864 445555555432 222 333321100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
+ + +.++.||.|+|||+.
T Consensus 265 ------~-----------------------------------------------------~----~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 265 ------F-----------------------------------------------------L----ATASVDQTVKIWDLR 281 (435)
T ss_dssp ------E-----------------------------------------------------E----EEEETTSBCCEEETT
T ss_pred ------E-----------------------------------------------------E----EEecCcceeeEEecc
Confidence 0 0 023478999999998
Q ss_pred CCeEEE---EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCC-------CC--------------CCCCCc-
Q 046828 374 SRSVIS---QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSS-------KG--------------RSGSAS- 428 (627)
Q Consensus 374 s~~~l~---~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~-------~~--------------~~g~~~- 428 (627)
+.+... ...+|..+|.+|+|+|+|++|+|++.||+ |+|||+..... .. ..+...
T Consensus 282 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (435)
T 4e54_B 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360 (435)
T ss_dssp TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEE
T ss_pred cccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEE
Confidence 865433 34689999999999999999999999998 89999852100 00 000000
Q ss_pred --cccC----------------CCC-ceeEEEEEeecCCcCcEEEE-EEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 429 --QTYD----------------WTS-SHVHLYKLHRGMTSAVIQDI-CFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 429 --~~~~----------------~~~-~~~~l~~l~rG~t~a~I~sI-aFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
...+ |.. ....+..+..++. ..|.++ +|||||++||+++ |++|+||+++.
T Consensus 361 ~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~-~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPES-SGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp EECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSC-CCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCC-CcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 0000 000 0012334433443 347776 7999999999876 78999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-18 Score=171.86 Aligned_cols=214 Identities=12% Similarity=0.084 Sum_probs=155.8
Q ss_pred CCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcC
Q 046828 99 DATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMS 178 (627)
Q Consensus 99 ~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~ 178 (627)
...+....+..|.+.|.++.+ |.. .+|+... .
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~-------------~~l~s~~----------------------------------~ 37 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDD-------------SKVASVS----------------------------------R 37 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EET-------------TEEEEEE----------------------------------T
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCC-------------CEEEEEE----------------------------------c
Confidence 333455667789999999988 542 4555432 1
Q ss_pred CcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCc---eeEEEEcCCCCCCCCCCCcCcc
Q 046828 179 PTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLE---SKFSVLTYPVPHFGGQGTSGVN 251 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e---~~~tl~~~p~~~~~~~g~~~~~ 251 (627)
+++|++||+.+++.+..+. +...|.++++++ ++|+++. ++.|++||+.+.+ .+..+..|..+
T Consensus 38 dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~----------- 106 (313)
T 3odt_A 38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN----------- 106 (313)
T ss_dssp TSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC-----------
T ss_pred CCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC-----------
Confidence 3789999999999988887 466999999987 6777775 5589999987653 34444443322
Q ss_pred cccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 252 IGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 252 ~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
+..+++.++.|+
T Consensus 107 --i~~~~~~~~~l~------------------------------------------------------------------ 118 (313)
T 3odt_A 107 --VCSLSFQDGVVI------------------------------------------------------------------ 118 (313)
T ss_dssp --EEEEEEETTEEE------------------------------------------------------------------
T ss_pred --EEEEEecCCEEE------------------------------------------------------------------
Confidence 122222222222
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNI 410 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I 410 (627)
.+..+|.|++|| .++.+..+..|..+|.+++|.| ++.+|++++.+|+ |
T Consensus 119 ----------------------------~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i 167 (313)
T 3odt_A 119 ----------------------------SGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT-I 167 (313)
T ss_dssp ----------------------------EEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-E
T ss_pred ----------------------------EEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC-E
Confidence 234689999999 6788899999999999999998 9999999999998 7
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
++||.. ..+..+ .+.....|.+++|+|+++ |++++.||+|+||++........+..|
T Consensus 168 ~i~d~~---------------------~~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 168 KLWQND---------------------KVIKTF-SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEETT---------------------EEEEEE-CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEecC---------------------ceEEEE-eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 999953 133333 443445699999999999 999999999999999876555556556
Q ss_pred ccc
Q 046828 491 NSH 493 (627)
Q Consensus 491 ~s~ 493 (627)
...
T Consensus 225 ~~~ 227 (313)
T 3odt_A 225 ESF 227 (313)
T ss_dssp SSC
T ss_pred Cce
Confidence 543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-19 Score=181.46 Aligned_cols=258 Identities=11% Similarity=0.112 Sum_probs=173.1
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEec----cCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGY----SNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy----~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.+.+.|..+.|.. ....+++.|. ++.++|||++...........|.++|.++.+.|... .
T Consensus 16 ~h~~~v~~~~~~p------~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~ 79 (357)
T 3i2n_A 16 GFNYTVFDCKWVP------CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL----------Q 79 (357)
T ss_dssp ECSSCEEEEEECT------TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT----------T
T ss_pred CCCCceEEEEEcC------CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC----------C
Confidence 3677888899863 1256766664 678999999986533333446888999988876520 0
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc-eEEEEe-cCCeEEEEEe------
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN-YVHVLR-FRSTVYMVRC------ 207 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~-~V~tL~-f~s~V~sV~~------ 207 (627)
..+|++.. .+++|++||+++++ .+.++. +...|.++.+
T Consensus 80 ~~~l~~~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 125 (357)
T 3i2n_A 80 QRYLATGD----------------------------------FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGI 125 (357)
T ss_dssp TCCEEEEE----------------------------------TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGC
T ss_pred CceEEEec----------------------------------CCCeEEEEeCCCCCccEEEEEecccceEEEeecccccc
Confidence 14555432 12569999999998 888887 5568999965
Q ss_pred cC--cEEEEEe-CCeEEEEeCCCCc-eeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCC
Q 046828 208 SP--RIVAVGL-AAQIYCFDALTLE-SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 208 s~--~~LaV~~-~~~I~i~D~~t~e-~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
++ +.|+++. ++.|++||+.+.+ .+..+..+.... . ..+..+++++ ++.++.
T Consensus 126 s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~--~~v~~~~~~~---~~~~~~------------- 180 (357)
T 3i2n_A 126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN-------K--RDCWTVAFGN---AYNQEE------------- 180 (357)
T ss_dssp C-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC-------C--CCEEEEEEEC---CCC-CC-------------
T ss_pred CCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC-------C--CceEEEEEEe---ccCCCC-------------
Confidence 43 5777775 5589999999987 556664432210 0 0011111100 011100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
.. + ..+..
T Consensus 181 ---------------~~-----------------------------------------------------l----~~~~~ 188 (357)
T 3i2n_A 181 ---------------RV-----------------------------------------------------V----CAGYD 188 (357)
T ss_dssp ---------------CE-----------------------------------------------------E----EEEET
T ss_pred ---------------CE-----------------------------------------------------E----EEEcc
Confidence 00 0 12346
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECC---CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDR---SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp---dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+|.|++||+.+++.+ ....|..+|.+++|+| +|.+|++++.+|+ |+|||+.. +.. . .....
T Consensus 189 d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~-------~~~------~-~~~~~ 252 (357)
T 3i2n_A 189 NGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRT-------QHP------T-KGFAS 252 (357)
T ss_dssp TSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEE-------EET------T-TEEEE
T ss_pred CCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcC-------CCc------c-cceee
Confidence 899999999998864 4567899999999999 9999999999997 89999851 110 0 00011
Q ss_pred EEEeecCCcCcEEEEEEccCCC-EEEEEeCCCeEEEEEcCCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQ-WIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~-~Las~S~dgTvhIw~i~~~g 482 (627)
. ...++. ..|.+++|+||++ +|++++.||+|+||++....
T Consensus 253 ~-~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 253 V-SEKAHK-STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp E-EEECCS-SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred e-ccCCCc-CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 1 223554 4599999999999 89999999999999998643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-19 Score=183.34 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=167.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEE-eeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSEL-VSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~el-ls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.+.|..+.|.. ..+.+++.+.++.++|||++.......+ +..|.+.|..+.+.|.. .+
T Consensus 50 ~h~~~v~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~ 110 (372)
T 1k8k_C 50 EHNGQVTGVDWAP------DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-------------KK 110 (372)
T ss_dssp CCSSCEEEEEEET------TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-------------SE
T ss_pred CCCCcccEEEEeC------CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-------------CE
Confidence 4567788888864 2367788888889999999875422222 24577888888887642 46
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce---EEEEe--cCCeEEEEEecC--cE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY---VHVLR--FRSTVYMVRCSP--RI 211 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~---V~tL~--f~s~V~sV~~s~--~~ 211 (627)
|++.. .++.|++||+++++. ...+. +...|.++++++ ++
T Consensus 111 l~~~~----------------------------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 111 FAVGS----------------------------------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEEE----------------------------------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EEEEe----------------------------------CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 65432 125599999998874 33443 356899999987 67
Q ss_pred EEEEe-CCeEEEEeCCCCc------------------eeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCC
Q 046828 212 VAVGL-AAQIYCFDALTLE------------------SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPL 272 (627)
Q Consensus 212 LaV~~-~~~I~i~D~~t~e------------------~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~ 272 (627)
|+++. ++.|++||+...+ .+..+..|..+ +. -+++.+
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v~-------~~~~~~---- 212 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-------------VH-------GVCFSA---- 212 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-------------EE-------EEEECS----
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe-------------EE-------EEEECC----
Confidence 77775 5689999976432 22222111110 00 111111
Q ss_pred cCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccC
Q 046828 273 LPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAG 352 (627)
Q Consensus 273 v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g 352 (627)
++.
T Consensus 213 ----------------------------------------------------------------~~~------------- 215 (372)
T 1k8k_C 213 ----------------------------------------------------------------NGS------------- 215 (372)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred ----------------------------------------------------------------CCC-------------
Confidence 000
Q ss_pred cccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCc--cc
Q 046828 353 RNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSAS--QT 430 (627)
Q Consensus 353 ~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~--~~ 430 (627)
.+ ..+..||.|++||+.+++.+..+..|..+|.+++|+|+|++|+++ .||+ |+||++... .|... ..
T Consensus 216 ~l----~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~-----~~~~~~~~~ 284 (372)
T 1k8k_C 216 RV----AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSA-----AGKLSFGGR 284 (372)
T ss_dssp EE----EEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETT-----TTEEEECCC
T ss_pred EE----EEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCc-----CceEEEeec
Confidence 01 124578999999999999999999999999999999999999988 7887 799998620 01000 00
Q ss_pred cCC------------------CCceeEE------EEEeecCCcCcEEEEEEc-cCC---CEEEEEeCCCeEEEEEcCC
Q 046828 431 YDW------------------TSSHVHL------YKLHRGMTSAVIQDICFS-HYS---QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 431 ~~~------------------~~~~~~l------~~l~rG~t~a~I~sIaFS-pDg---~~Las~S~dgTvhIw~i~~ 480 (627)
.+. ....... ..+..||.. .|.+++|. +|| ++|++++.||+|+||++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 285 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 000 0000011 334457654 59999966 677 9999999999999999865
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-19 Score=181.69 Aligned_cols=181 Identities=15% Similarity=0.229 Sum_probs=129.3
Q ss_pred CcEEEEEECCC--CceEEEEe-cCCeEEEEEecC----cEEEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCc
Q 046828 179 PTAVRFYSLRS--HNYVHVLR-FRSTVYMVRCSP----RIVAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTS 248 (627)
Q Consensus 179 ~~tV~lwdl~t--~~~V~tL~-f~s~V~sV~~s~----~~LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~ 248 (627)
+++|+|||+.+ ++.+.+|+ +..+|++|+|++ ++|+++. +++|+|||+.+++ .+.++..|..+
T Consensus 30 D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------- 101 (297)
T 2pm7_B 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS-------- 101 (297)
T ss_dssp TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC--------
T ss_pred CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc--------
Confidence 36799999974 46788888 456999999973 6788776 5689999998874 34445444332
Q ss_pred CcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEe
Q 046828 249 GVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLS 328 (627)
Q Consensus 249 ~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s 328 (627)
+.. +++.++.. +.+
T Consensus 102 -----v~~-------v~~~p~~~--------------------------g~~---------------------------- 115 (297)
T 2pm7_B 102 -----VNS-------VQWAPHEY--------------------------GPM---------------------------- 115 (297)
T ss_dssp -----EEE-------EEECCGGG--------------------------CSE----------------------------
T ss_pred -----eeE-------EEeCcCCC--------------------------CcE----------------------------
Confidence 222 33332100 000
Q ss_pred eeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe--EEEEeccCCCCeEEEEECCC----------
Q 046828 329 RYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS--VISQFRAHTSPISALCFDRS---------- 396 (627)
Q Consensus 329 ~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~--~l~~~~aH~~~Is~laFspd---------- 396 (627)
+ +.++.||.|+|||+.+.. ....+.+|...|.+++|+|+
T Consensus 116 -------------------------l----~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 116 -------------------------L----LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp -------------------------E----EEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------
T ss_pred -------------------------E----EEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCC
Confidence 0 123578999999998763 24678899999999999997
Q ss_pred ---CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC---CEEEEEeCC
Q 046828 397 ---GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS---QWIAIVSSR 470 (627)
Q Consensus 397 ---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg---~~Las~S~d 470 (627)
+++||+|+.||+ |+|||+.. +. .....+..+ +||+. .|.+|+|+||+ ++||+++.|
T Consensus 167 ~~~~~~l~sgs~D~~-v~lwd~~~-------~~--------~~~~~~~~l-~~H~~-~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 167 TKESRKFVTGGADNL-VKIWKYNS-------DA--------QTYVLESTL-EGHSD-WVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp ---CCEEEEEETTSC-EEEEEEET-------TT--------TEEEEEEEE-CCCSS-CEEEEEECCCCSSSEEEEEEETT
T ss_pred CCCcceEEEEcCCCc-EEEEEEcC-------CC--------ceEEEEEEe-cCCCC-ceEEEEECCCCCCceEEEEEECC
Confidence 579999999998 89999851 11 000123333 67754 59999999995 899999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
++|+||+++.
T Consensus 229 ~~v~iWd~~~ 238 (297)
T 2pm7_B 229 RTCIIWTQDN 238 (297)
T ss_dssp SCEEEEEESS
T ss_pred CcEEEEEeCC
Confidence 9999999865
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=187.09 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=143.3
Q ss_pred eEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEE
Q 046828 104 SELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVR 183 (627)
Q Consensus 104 ~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~ 183 (627)
+.++..|.++|..+++.|.. .+||..+ .+++|+
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g-------------~~lasgs----------------------------------~D~~v~ 38 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYG-------------TRLATCS----------------------------------SDRSVK 38 (316)
T ss_dssp --------CCEEEEEECGGG-------------CEEEEEE----------------------------------TTTEEE
T ss_pred eeecccccCeEEEeeEcCCC-------------CEEEEEe----------------------------------CCCeEE
Confidence 45566799999999997643 4555432 247899
Q ss_pred EEECCCCc--eEEEEe-cCCeEEEEEecC----cEEEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCcCcccc
Q 046828 184 FYSLRSHN--YVHVLR-FRSTVYMVRCSP----RIVAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 184 lwdl~t~~--~V~tL~-f~s~V~sV~~s~----~~LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
|||+++++ .+.+++ +..+|++|+|++ ++|+++. +++|+|||+.+++ ..+++.+|..+
T Consensus 39 lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~------------- 105 (316)
T 3bg1_A 39 IFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS------------- 105 (316)
T ss_dssp EEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC-------------
T ss_pred EEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc-------------
Confidence 99999875 467777 456999999963 6777775 5689999999874 45555555432
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+. -+++.++.. +.+
T Consensus 106 V~-------~v~~~p~~~--------------------------g~~--------------------------------- 119 (316)
T 3bg1_A 106 VN-------SVCWAPHDY--------------------------GLI--------------------------------- 119 (316)
T ss_dssp CC-------EEEECCTTT--------------------------CSC---------------------------------
T ss_pred eE-------EEEECCCCC--------------------------CcE---------------------------------
Confidence 22 233433210 000
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE---EEEeccCCCCeEEEEECCC--------------
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV---ISQFRAHTSPISALCFDRS-------------- 396 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~---l~~~~aH~~~Is~laFspd-------------- 396 (627)
+ +.++.||.|+|||+..... ...+.+|..+|.+++|+|+
T Consensus 120 --------------------l----asgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 175 (316)
T 3bg1_A 120 --------------------L----ACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK 175 (316)
T ss_dssp --------------------E----EEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCC
T ss_pred --------------------E----EEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccC
Confidence 0 1345789999999987632 4567799999999999998
Q ss_pred ---CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC----CEEEEEeC
Q 046828 397 ---GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS----QWIAIVSS 469 (627)
Q Consensus 397 ---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg----~~Las~S~ 469 (627)
+++||+++.||+ |+|||+... +. .......+||+. .|.+++|+||+ ++||+++.
T Consensus 176 ~~~~~~l~sgs~D~~-v~lWd~~~~------~~-----------~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 176 PNYIKRFASGGCDNL-IKLWKEEED------GQ-----------WKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp CCCCCBEECCBTTSB-CCEEEECTT------SC-----------EEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEET
T ss_pred ccccceEEEecCCCe-EEEEEeCCC------Cc-----------cceeeecccCCC-ceEEEEecCCCCCCCceEEEEcC
Confidence 579999999998 799998511 10 122233367754 59999999997 89999999
Q ss_pred CCeEEEEEcCC
Q 046828 470 RGTCHIFVLTP 480 (627)
Q Consensus 470 dgTvhIw~i~~ 480 (627)
||+|+||++..
T Consensus 237 D~~v~iw~~~~ 247 (316)
T 3bg1_A 237 DGRVFIWTCDD 247 (316)
T ss_dssp TCEEEEEECSS
T ss_pred CCeEEEEEccC
Confidence 99999999976
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-19 Score=189.62 Aligned_cols=240 Identities=13% Similarity=0.168 Sum_probs=160.6
Q ss_pred eEEEEeccCcEEEEecCCC---------CCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC-EEEEEEccCccCCc
Q 046828 82 HVLLLGYSNGFQVLDVEDA---------TNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP-LLLVVACDEAKNSG 151 (627)
Q Consensus 82 ~vl~~Gy~~G~qVWdv~~~---------~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp-Llavv~~d~~~~~g 151 (627)
.+++.+.++.++|||+... ......+..|.+.|..+.+.|.. + +|+...
T Consensus 143 ~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-------------~~~l~s~~-------- 201 (430)
T 2xyi_A 143 VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL-------------NGYLLSAS-------- 201 (430)
T ss_dssp EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS-------------TTEEEEEC--------
T ss_pred EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC-------------CCeEEEEe--------
Confidence 3444455667999999862 22344556678888888887642 3 554321
Q ss_pred ceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce-------EEEEe-cCCeEEEEEecC---cEEEEEe-CCe
Q 046828 152 LVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-------VHVLR-FRSTVYMVRCSP---RIVAVGL-AAQ 219 (627)
Q Consensus 152 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-------V~tL~-f~s~V~sV~~s~---~~LaV~~-~~~ 219 (627)
.+++|++||++++.. ...+. +...|.+|++++ .+|+++. ++.
T Consensus 202 --------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 202 --------------------------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp --------------------------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred --------------------------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 136799999998432 34453 456899999986 5777775 668
Q ss_pred EEEEeCCCC---ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 220 IYCFDALTL---ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 220 I~i~D~~t~---e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
|++||+.+. +.+..+..|..+ + +-|++.+....
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~-------------v-------~~i~~~p~~~~------------------------ 291 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAE-------------V-------NCLSFNPYSEF------------------------ 291 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSC-------------E-------EEEEECSSCTT------------------------
T ss_pred EEEEECCCCCCCcceeEeecCCCC-------------e-------EEEEeCCCCCC------------------------
Confidence 999999987 455566554332 2 22333332100
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC-C
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS-R 375 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s-~ 375 (627)
+ + +.++.+|.|+|||+.+ .
T Consensus 292 ---------------~-----------------------------------------l----~tg~~dg~v~vwd~~~~~ 311 (430)
T 2xyi_A 292 ---------------I-----------------------------------------L----ATGSADKTVALWDLRNLK 311 (430)
T ss_dssp ---------------E-----------------------------------------E----EEEETTSEEEEEETTCTT
T ss_pred ---------------E-----------------------------------------E----EEEeCCCeEEEEeCCCCC
Confidence 0 0 0235789999999998 5
Q ss_pred eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
+.+..+..|..+|.+|+|+|+| .+|++++.||+ |+|||+...... .......+. ....+.. ..|+. ..|.+
T Consensus 312 ~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~---~~~~~~~~~--~~~~~~~-~~~h~-~~v~~ 383 (430)
T 2xyi_A 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEE---QSTEDAEDG--PPELLFI-HGGHT-AKISD 383 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCC---CCHHHHHHC--CTTEEEE-CCCCS-SCEEE
T ss_pred CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccc---cCccccccC--CcceEEE-cCCCC-CCceE
Confidence 6788999999999999999999 57999999998 799999621100 000000000 0013333 35654 35999
Q ss_pred EEEccCCC-EEEEEeCCCeEEEEEcCC
Q 046828 455 ICFSHYSQ-WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 455 IaFSpDg~-~Las~S~dgTvhIw~i~~ 480 (627)
++|+|+++ +|++++.||+|+||++..
T Consensus 384 ~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 384 FSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99999999 899999999999999864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=187.48 Aligned_cols=177 Identities=12% Similarity=0.190 Sum_probs=129.7
Q ss_pred CcEEEEEECC--CCceEEEEe---cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeE----EEEcCCCCCCCCCC
Q 046828 179 PTAVRFYSLR--SHNYVHVLR---FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKF----SVLTYPVPHFGGQG 246 (627)
Q Consensus 179 ~~tV~lwdl~--t~~~V~tL~---f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~----tl~~~p~~~~~~~g 246 (627)
+++|+|||+. +++.+..+. +...|.+|+|++ ++|+++. ++.|++||+.+++... .+.+|..+
T Consensus 124 dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~------ 197 (450)
T 2vdu_B 124 DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM------ 197 (450)
T ss_dssp GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC------
T ss_pred CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCc------
Confidence 4789999999 899998885 557999999997 6777775 4689999998876543 33333221
Q ss_pred CcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 247 TSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 247 ~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
+ ..|++.++.. .+.
T Consensus 198 -------v-------~~~~~sp~~~-------------------------~~~--------------------------- 211 (450)
T 2vdu_B 198 -------L-------TDVHLIKDSD-------------------------GHQ--------------------------- 211 (450)
T ss_dssp -------E-------EEEEEEECTT-------------------------SCE---------------------------
T ss_pred -------e-------EEEEEcCCCC-------------------------CCc---------------------------
Confidence 1 1233333200 000
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQ-FRAHTSPISALCFDRSGTLLVTASI 405 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~-~~aH~~~Is~laFspdG~lLaTaS~ 405 (627)
| + ..++.|+.|+|||+.+++.+.. +.+|..+|.+++|+ +|++|++++.
T Consensus 212 ---~-----------------------l----~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~ 260 (450)
T 2vdu_B 212 ---F-----------------------I----ITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGG 260 (450)
T ss_dssp ---E-----------------------E----EEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred ---E-----------------------E----EEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeC
Confidence 0 0 0234689999999999988877 56999999999999 9999999999
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec-----------------------CCcCcEEEEEEccCCC
Q 046828 406 HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG-----------------------MTSAVIQDICFSHYSQ 462 (627)
Q Consensus 406 dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG-----------------------~t~a~I~sIaFSpDg~ 462 (627)
||+ |+|||+. ++. .+..+..+ .....|.+|+|+||++
T Consensus 261 d~~-v~vwd~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 261 DDK-IFAWDWK-------TGK------------NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SSE-EEEEETT-------TCC------------EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CCe-EEEEECC-------CCc------------EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 997 8999986 232 33333211 1123499999999999
Q ss_pred EEEEEe-CCCeEEEEEc
Q 046828 463 WIAIVS-SRGTCHIFVL 478 (627)
Q Consensus 463 ~Las~S-~dgTvhIw~i 478 (627)
+|++++ .+++|+||++
T Consensus 321 ~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEETTCSEEEEEEE
T ss_pred EEEEEECCCCeEEEEEe
Confidence 999999 8999999999
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-18 Score=178.27 Aligned_cols=237 Identities=13% Similarity=0.152 Sum_probs=172.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCC-eEEEEeccCcEEEEec-CCCCCceEEeee--cCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFK-HVLLLGYSNGFQVLDV-EDATNVSELVSR--RDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~-~vl~~Gy~~G~qVWdv-~~~~~~~ells~--~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.+.+.|..+.|... .+ .+++.+.++.+++||+ +... ...+.. |.+.|..+.+.| .
T Consensus 54 ~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~------------ 112 (342)
T 1yfq_A 54 RYKHPLLCCNFIDN------TDLQIYVGTVQGEILKVDLIGSPS--FQALTNNEANLGICRICKYG-D------------ 112 (342)
T ss_dssp ECSSCEEEEEEEES------SSEEEEEEETTSCEEEECSSSSSS--EEECBSCCCCSCEEEEEEET-T------------
T ss_pred ecCCceEEEEECCC------CCcEEEEEcCCCeEEEEEeccCCc--eEeccccCCCCceEEEEeCC-C------------
Confidence 35677888888642 36 6888888899999999 7654 456666 889999999886 3
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC---------CceEEEEecCCeEEEEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS---------HNYVHVLRFRSTVYMVR 206 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t---------~~~V~tL~f~s~V~sV~ 206 (627)
.+|+... .+++|++||+++ ++++.++.+...|.+++
T Consensus 113 -~~l~s~~----------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 157 (342)
T 1yfq_A 113 -DKLIAAS----------------------------------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp -TEEEEEE----------------------------------TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred -CEEEEEc----------------------------------CCCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence 4554432 137799999998 88888888888999999
Q ss_pred ecCcEEEEEe-CCeEEEEeCCC-CceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcC-CCCCcCCCCccCCCC
Q 046828 207 CSPRIVAVGL-AAQIYCFDALT-LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYAS-NNPLLPNTGRLSPQS 283 (627)
Q Consensus 207 ~s~~~LaV~~-~~~I~i~D~~t-~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~-~~~~v~~~gr~~~q~ 283 (627)
+++..|+++. ++.|++||+.+ ++........+.. ... +.+++.+ +...
T Consensus 158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~i-------~~i~~~~~~~~~----------- 208 (342)
T 1yfq_A 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK-----------YQI-------RDVALLPKEQEG----------- 208 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS-----------SCE-------EEEEECSGGGCE-----------
T ss_pred ecCCcEEEEeCCCeEEEEECCccccccceeeecCCC-----------Cce-------eEEEECCCCCCE-----------
Confidence 9997777776 45899999998 6643332221111 001 2233332 1100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
+ ..+..
T Consensus 209 ----------------------------l----------------------------------------------~~~~~ 214 (342)
T 1yfq_A 209 ----------------------------Y----------------------------------------------ACSSI 214 (342)
T ss_dssp ----------------------------E----------------------------------------------EEEET
T ss_pred ----------------------------E----------------------------------------------EEEec
Confidence 0 01346
Q ss_pred CCeEEEEECCCC------eEEEEeccCCC---------CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCc
Q 046828 364 AGMVVVKDIVSR------SVISQFRAHTS---------PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 364 dG~V~IwD~~s~------~~l~~~~aH~~---------~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~ 428 (627)
+|.|+|||+... +.+..++.|.. +|.+++|+|+|++|++++.||+ |+|||+. ++
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~-------~~--- 283 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQ-------TR--- 283 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETT-------TT---
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCc-------cH---
Confidence 899999999887 77888998866 9999999999999999999998 8999986 33
Q ss_pred cccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe-EEEEEc
Q 046828 429 QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT-CHIFVL 478 (627)
Q Consensus 429 ~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT-vhIw~i 478 (627)
..+..+ .+++...|.+++ ||+++|++++.||+ .+.|..
T Consensus 284 ---------~~~~~~-~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 284 ---------KKIKNF-AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------EEEEEC-CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred ---------hHhhhh-hcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 245554 565345699999 99999999999999 655554
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=220.29 Aligned_cols=256 Identities=14% Similarity=0.181 Sum_probs=180.6
Q ss_pred CcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEE
Q 046828 63 DQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVV 142 (627)
Q Consensus 63 d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv 142 (627)
..|..+.|.. ..+.+++.+.++.+++||+.... ....+..|.+.|..+.+.|.. .+|+..
T Consensus 962 ~~i~~~~~sp------~g~~l~~g~~~g~i~i~d~~~~~-~~~~~~~h~~~v~~l~~s~dg-------------~~l~s~ 1021 (1249)
T 3sfz_A 962 AQVSCCCLSP------HLEYVAFGDEDGAIKIIELPNNR-VFSSGVGHKKAVRHIQFTADG-------------KTLISS 1021 (1249)
T ss_dssp SCEEEEEECT------TSSEEEEEETTSCCEEEETTTTS-CEEECCCCSSCCCCEEECSSS-------------SCEEEE
T ss_pred CcEEEEEEcC------CCCEEEEEcCCCCEEEEEcCCCc-eeeecccCCCceEEEEECCCC-------------CEEEEE
Confidence 4566666642 23567777777789999999855 455566788899888887643 455432
Q ss_pred EccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeE
Q 046828 143 ACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQI 220 (627)
Q Consensus 143 ~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I 220 (627)
+ .+++|++||+.+++.+....+...|.++.+++ ++++.+.++.|
T Consensus 1022 ~----------------------------------~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v 1067 (1249)
T 3sfz_A 1022 S----------------------------------EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV 1067 (1249)
T ss_dssp C----------------------------------SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEE
T ss_pred c----------------------------------CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcE
Confidence 1 13679999999999887666788999999987 45555567799
Q ss_pred EEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcc
Q 046828 221 YCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNL 300 (627)
Q Consensus 221 ~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~ 300 (627)
++||+.+++.+.++.+|..+ +..+ ++.++...
T Consensus 1068 ~vwd~~~~~~~~~~~~~~~~-------------v~~~-------~~s~d~~~---------------------------- 1099 (1249)
T 3sfz_A 1068 KVWNVITGRIERDFTCHQGT-------------VLSC-------AISSDATK---------------------------- 1099 (1249)
T ss_dssp EEEETTTTCCCEEEECCSSC-------------CCCE-------EECSSSSS----------------------------
T ss_pred EEEECCCCceeEEEcccCCc-------------EEEE-------EECCCCCE----------------------------
Confidence 99999999998888776543 2223 33322100
Q ss_pred cchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEE
Q 046828 301 MARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQ 380 (627)
Q Consensus 301 v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~ 380 (627)
+ ..++.||.|+|||+.+++.+..
T Consensus 1100 -----------------------------------------------------l----~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1100 -----------------------------------------------------F----SSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp -----------------------------------------------------C----EEECCSSCCCEECSSSSSCSBC
T ss_pred -----------------------------------------------------E----EEEcCCCcEEEEECCCcceeee
Confidence 0 0234688999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccC
Q 046828 381 FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHY 460 (627)
Q Consensus 381 ~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD 460 (627)
+.+|..+|.+++|+|||++||+++.||+ |+|||+. +|....... .....+...++. ..|.+++||||
T Consensus 1123 l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~-------~~~~~~~~~----~~~~~~~~~~~~-~~v~~l~fs~d 1189 (1249)
T 3sfz_A 1123 LKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVS-------DGQLLHSCA----PISVEEGTATHG-GWVTDVCFSPD 1189 (1249)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESS-------SSCCCCCCC----CCC-------CC-SCCCEEEECTT
T ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECC-------CCceEEEec----cccccccccccC-ceEEEEEECCC
Confidence 9999999999999999999999999998 7999986 221100000 000111112333 35999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 461 SQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 461 g~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
+++|++++ |+|++|++........+..|..
T Consensus 1190 g~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~ 1219 (1249)
T 3sfz_A 1190 SKTLVSAG--GYLKWWNVATGDSSQTFYTNGT 1219 (1249)
T ss_dssp SSCEEEES--SSEEEBCSSSCBCCCCCCCSSC
T ss_pred CCEEEECC--CeEEEEECCCCceeeeeeccCC
Confidence 99999885 9999999987554444444543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=207.00 Aligned_cols=264 Identities=13% Similarity=0.148 Sum_probs=177.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|.+.|..+.|.. ..+.+++.+.++.++|||+.... .....+..|.++|.++.+.|... ..
T Consensus 6 ~gH~~~V~~l~~s~------dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-----------~~ 68 (753)
T 3jro_A 6 NAHNELIHDAVLDY------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-----------GT 68 (753)
T ss_dssp --CCCCEEEECCCS------SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS-----------CS
T ss_pred ccCcceeEEEEECC------CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC-----------CC
Confidence 45778899999864 23567888888899999998532 33445667889999999976531 14
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC----c
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP----R 210 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~----~ 210 (627)
+|+.++ .+++|++||+++++ .+..+. +...|.++++++ +
T Consensus 69 ~l~s~s----------------------------------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~ 114 (753)
T 3jro_A 69 ILASCS----------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP 114 (753)
T ss_dssp EEEEEE----------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEEEe----------------------------------CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCC
Confidence 555432 13669999999997 566665 556999999986 4
Q ss_pred EEEEEe-CCeEEEEeCCCCce--eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLES--KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~--~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
+|+++. ++.|++||+.+.+. ...+.+|+.+ +. .+++.+..... .+..
T Consensus 115 ~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~-------------v~-------~l~~~p~~~~~--~~~~-------- 164 (753)
T 3jro_A 115 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VN-------SASWAPATIEE--DGEH-------- 164 (753)
T ss_dssp EEEEEETTSEEEEEECCSSSCCCCEEEECCSSC-------------EE-------EEEECCCC-----------------
T ss_pred EEEEEeCCCcEEEEEeecCCCcceeEeecCCCc-------------eE-------EEEecCccccc--cccc--------
Confidence 677765 56899999988743 3444444332 22 23333311000 0000
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
. + .++ +.. ...+..||.|
T Consensus 165 ------------------------~-------~--------------~~d--------------~~~---l~sgs~dg~I 182 (753)
T 3jro_A 165 ------------------------N-------G--------------TKE--------------SRK---FVTGGADNLV 182 (753)
T ss_dssp -----------------------------------------------CGG--------------GCC---EEEEETTSCE
T ss_pred ------------------------c-------c--------------CCC--------------CCE---EEEEECCCeE
Confidence 0 0 000 000 0134679999
Q ss_pred EEEECCCC----eEEEEeccCCCCeEEEEECCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 368 VVKDIVSR----SVISQFRAHTSPISALCFDRS---GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 368 ~IwD~~s~----~~l~~~~aH~~~Is~laFspd---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+|||+.++ ..+..+.+|..+|.+++|+|+ |.+|++++.||+ |+|||+.... +. . ...+
T Consensus 183 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~-----~~------~---~~~~ 247 (753)
T 3jro_A 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----GP------W---KKTL 247 (753)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSS-----SC------C---BCCB
T ss_pred EEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCC-----Cc------c---eeEE
Confidence 99999877 567788999999999999999 999999999998 8999986210 00 0 0011
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.. ..++ ...|.+++|+||+++|++++.||+|+||++...+
T Consensus 248 ~~-~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 248 LK-EEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SS-SSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec-cCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 11 1122 3459999999999999999999999999998543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-19 Score=185.43 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=97.5
Q ss_pred CeEEEEECCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 365 GMVVVKDIVSRSVIS--QFRAHTSPISALCFDRSGTLLVTASIHGN---NINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 365 G~V~IwD~~s~~~l~--~~~aH~~~Is~laFspdG~lLaTaS~dGt---~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+.+.+|+..+++.+. ....|...|.+++|+|+|++|++++.++. .+++|++. . +. .....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~-~------~~--------~~~~~ 261 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK-S------GN--------TSVLR 261 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE-T------TE--------EEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc-c------ce--------eccee
Confidence 456677777766543 34578899999999999999999998874 47888875 1 10 00012
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeee-cccccccccCCCCCCCccCCCCCCCccccccC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV-LQIQNSHVDRPTLSPVLSVPWWSSPSFMINQP 518 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~-~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~ 518 (627)
...+ .++.. .|.+|+|||||++||+++.|++|+||++........ ++.|...+....+.|...+...-+.+-++..|
T Consensus 262 ~~~~-~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 262 SKQV-TNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEEE-ESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred eeee-cCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 2223 45543 499999999999999999999999999987554445 46788777665666665444444445555555
Q ss_pred CCC
Q 046828 519 SFS 521 (627)
Q Consensus 519 ~~~ 521 (627)
.++
T Consensus 340 ~ip 342 (365)
T 4h5i_A 340 KLP 342 (365)
T ss_dssp ECC
T ss_pred EcC
Confidence 553
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=194.51 Aligned_cols=202 Identities=11% Similarity=0.123 Sum_probs=129.9
Q ss_pred cEEEEEECCCC--ceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCc---eeEEEEcCCCCCCCCCCCcCc
Q 046828 180 TAVRFYSLRSH--NYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLE---SKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 180 ~tV~lwdl~t~--~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e---~~~tl~~~p~~~~~~~g~~~~ 250 (627)
++|+|||+.++ +.+.++. +...|.++++++ ++|+++. ++.|++||+.+++ ....+..|..+
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~---------- 102 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA---------- 102 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC----------
T ss_pred CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc----------
Confidence 67999999998 7777887 456999999997 6777776 5689999999877 33333333221
Q ss_pred ccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 251 NIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 251 ~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+ ..+++.++...
T Consensus 103 ---v-------~~~~~~~~~~~---------------------------------------------------------- 114 (377)
T 3dwl_C 103 ---A-------TFVRWSPNEDK---------------------------------------------------------- 114 (377)
T ss_dssp ---E-------EEEECCTTSSC----------------------------------------------------------
T ss_pred ---e-------EEEEECCCCCE----------------------------------------------------------
Confidence 1 12333321100
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe---EEEEecc-CCCCeEEEEECCCCCEEEEEeCC
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS---VISQFRA-HTSPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~---~l~~~~a-H~~~Is~laFspdG~lLaTaS~d 406 (627)
+ ..+..||.|+|||+.+++ .+..+.. |..+|.+++|+|+|++|++++.|
T Consensus 115 -----------------------l----~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 115 -----------------------F----AVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -----------------------C----EEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred -----------------------E----EEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 0 123468999999999886 4777887 99999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCC---ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTS---SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~---~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
|+ |+|||+.... . .... ....+.. ....+..+ ++. ..|.+++|+||+++|++++.||+|+||++.....
T Consensus 168 ~~-i~iwd~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 168 RK-AYVLSAYVRD-V--DAKP-EASVWGSRLPFNTVCAEY--PSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SC-EEEEEECCSS-C--C-CC-CSCSSCSCCCEEEEEECC--CCS-SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred CE-EEEEEEEecc-c--CCCc-cccccccccchhhhhhcc--cCC-ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 98 8999984110 0 0000 0000110 01223333 554 4599999999999999999999999999987665
Q ss_pred ----eeecccccccc
Q 046828 484 ----ETVLQIQNSHV 494 (627)
Q Consensus 484 ----~~~~~~h~s~v 494 (627)
...+..|...+
T Consensus 240 ~~~~~~~~~~~~~~v 254 (377)
T 3dwl_C 240 PPRALITVKLSQLPL 254 (377)
T ss_dssp CEEECCCEECSSSCE
T ss_pred cceeeEeecCCCCce
Confidence 44556665433
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-19 Score=185.22 Aligned_cols=115 Identities=13% Similarity=0.209 Sum_probs=82.6
Q ss_pred CCCCCe-EEEEECCCCeEEEEec-c-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCc-------cc
Q 046828 361 TDIAGM-VVVKDIVSRSVISQFR-A-HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSAS-------QT 430 (627)
Q Consensus 361 ~~~dG~-V~IwD~~s~~~l~~~~-a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~-------~~ 430 (627)
++.||+ |+|||+.+++.+..|. + |..+|.+++|+|||++||+++.||+ |+|||+...... ...... -.
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~-~~~~~~~~~~~~~~~ 290 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDN-KRHALKGWINMKYFQ 290 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCC-CSEETTTTEECCCCC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCc-ccccccceeeccccc
Confidence 457897 9999999999999998 5 9999999999999999999999998 899998621100 000000 00
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..|. ...+.+..+. ...+..++|++|+++|++++.||++++|++...
T Consensus 291 ~~~~---~~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 291 SEWS---LCNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CSSC---SEEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cccc---eeEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0000 0122222221 122467999999999999999999999998754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=179.37 Aligned_cols=212 Identities=15% Similarity=0.196 Sum_probs=151.4
Q ss_pred ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEE
Q 046828 103 VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAV 182 (627)
Q Consensus 103 ~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV 182 (627)
...++..|.++|.++.+.|.. .+|++.. .+++|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~-------------~~l~~~~----------------------------------~dg~i 35 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYG-------------KRLATCS----------------------------------SDKTI 35 (379)
T ss_dssp --CCEEECCCCEEEEEECSSS-------------SEEEEEE----------------------------------TTSCE
T ss_pred ccEEecCCcccEEEEEEcCCC-------------CEEEEEE----------------------------------CCCcE
Confidence 356778899999999987643 5666432 12569
Q ss_pred EEEECC--CCceEEEEe-cCCeEEEEEec----CcEEEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCcCccc
Q 046828 183 RFYSLR--SHNYVHVLR-FRSTVYMVRCS----PRIVAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 183 ~lwdl~--t~~~V~tL~-f~s~V~sV~~s----~~~LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
+|||+. +++.+.++. +...|.+|+++ .++|+++. ++.|++||+.+++ .+..+..|..+
T Consensus 36 ~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------ 103 (379)
T 3jrp_A 36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS------------ 103 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------
T ss_pred EEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc------------
Confidence 999998 667778887 55699999997 46787776 5689999999987 44444444332
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
+. -+++.++.. +.. +
T Consensus 104 -v~-------~~~~~~~~~--------------------------~~~-----------l-------------------- 118 (379)
T 3jrp_A 104 -VN-------SVQWAPHEY--------------------------GPL-----------L-------------------- 118 (379)
T ss_dssp -EE-------EEEECCGGG--------------------------CSE-----------E--------------------
T ss_pred -eE-------EEEeCCCCC--------------------------CCE-----------E--------------------
Confidence 22 233332100 000 0
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECC-------------CC
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDR-------------SG 397 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFsp-------------dG 397 (627)
..+..||.|+|||+.+. .....+..|..+|.+++|+| ++
T Consensus 119 --------------------------~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 119 --------------------------LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp --------------------------EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred --------------------------EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 02346899999999887 34557789999999999999 79
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccC---CCEEEEEeCCCeEE
Q 046828 398 TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHY---SQWIAIVSSRGTCH 474 (627)
Q Consensus 398 ~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD---g~~Las~S~dgTvh 474 (627)
.+|++++.||+ |+|||+. . +. ....+.....++. ..|.+++|+|| +++|++++.||+|+
T Consensus 173 ~~l~~~~~dg~-i~i~d~~-~------~~---------~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 173 RKFVTGGADNL-VKIWKYN-S------DA---------QTYVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp CEEEEEETTSC-EEEEEEE-T------TT---------TEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred CEEEEEeCCCe-EEEEEec-C------CC---------cceeeEEEEeccc-CcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence 99999999998 8999985 1 11 0012223335654 45999999999 99999999999999
Q ss_pred EEEcCCCC
Q 046828 475 IFVLTPFG 482 (627)
Q Consensus 475 Iw~i~~~g 482 (627)
||++....
T Consensus 235 iwd~~~~~ 242 (379)
T 3jrp_A 235 IWTQDNEQ 242 (379)
T ss_dssp EEEESSTT
T ss_pred EEeCCCCC
Confidence 99998653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-19 Score=183.09 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=76.4
Q ss_pred CCCCCeEEEEECCCCeEE-EEecc-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 361 TDIAGMVVVKDIVSRSVI-SQFRA-HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l-~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..||.|+|||+.+++.+ ..|.. |..+|.+|+|+|+|.+|+++++ ++ |+|||+.. +...
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~-------~~~~---------- 248 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRK-------DVGT---------- 248 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTS-------STTC----------
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCC-------CCcc----------
Confidence 357899999999999887 88998 9999999999999999999995 45 89999962 1100
Q ss_pred EEEEEeecCCcCcE--EEEEEccCCCEEEEEeC-CCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVI--QDICFSHYSQWIAIVSS-RGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I--~sIaFSpDg~~Las~S~-dgTvhIw~i~~~ 481 (627)
+..+...++. ..+ .+++|+||+++|++++. |++++||+++..
T Consensus 249 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 249 LAYPTYTIPE-FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp BSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eeeccccccc-ccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 0000000110 112 46999999999999999 999999998653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-19 Score=189.11 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=91.2
Q ss_pred CCCCCeEEEEECCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRA--HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~a--H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..||.|+|||+.+++.+..+.. |..+|.+++|+|+|.+|++++.||+ |+|||+. .+ .
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~-------~~------------~ 247 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIR-------FN------------V 247 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETT-------TT------------E
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcC-------Cc------------c
Confidence 46789999999999999999998 8999999999999999999999998 8999986 22 2
Q ss_pred EEEEEeecCCcCcEEEEEE----ccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 439 HLYKLHRGMTSAVIQDICF----SHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaF----SpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
.+..+..++. ..|.+++| ++|+++|++++.||+|+||++........+..|..
T Consensus 248 ~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 248 LIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp EEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred EEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 4555543443 36999954 56789999999999999999987655556666644
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-19 Score=183.73 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=164.1
Q ss_pred eccCcEEEEecCCCCCceEEeeecCCceEEEEEee-CCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccC
Q 046828 87 GYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQP-LPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRD 165 (627)
Q Consensus 87 Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp-~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~ 165 (627)
..+..++||+++... ..+++..|.++|.++.+.| .. .+|+..+
T Consensus 20 ~~~~~~~v~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~-------------~~l~~~~---------------------- 63 (408)
T 4a11_B 20 RAESTRRVLGLELNK-DRDVERIHGGGINTLDIEPVEG-------------RYMLSGG---------------------- 63 (408)
T ss_dssp HHHHHHHHHTEEECT-TEEECCCCSSCEEEEEECTTTC-------------CEEEEEE----------------------
T ss_pred eccCcceeeccccCc-ceeeeeccCCcEEEEEEecCCC-------------CEEEEEc----------------------
Confidence 345568889988744 4677888999999999987 43 5665432
Q ss_pred CCCCCCCCCCCcCCcEEEEEECCCCceEEEEe--------------cCCeEEEEEecC---cEEEEEe-CCeEEEEeCCC
Q 046828 166 GYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR--------------FRSTVYMVRCSP---RIVAVGL-AAQIYCFDALT 227 (627)
Q Consensus 166 g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~--------------f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t 227 (627)
.+++|++||+.+++.+..+. +...|.++++++ ++|+++. ++.|++||+.+
T Consensus 64 ------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 131 (408)
T 4a11_B 64 ------------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT 131 (408)
T ss_dssp ------------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT
T ss_pred ------------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC
Confidence 12669999999998776665 667999999986 4677665 67899999999
Q ss_pred CceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 228 LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 228 ~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
++....+.. +.+ .. .+++.+..+. +.+
T Consensus 132 ~~~~~~~~~-~~~-------------~~-------~~~~~~~~~~-------------------------~~~------- 158 (408)
T 4a11_B 132 LQTADVFNF-EET-------------VY-------SHHMSPVSTK-------------------------HCL------- 158 (408)
T ss_dssp TEEEEEEEC-SSC-------------EE-------EEEECSSCSS-------------------------CCE-------
T ss_pred CccceeccC-CCc-------------ee-------eeEeecCCCC-------------------------CcE-------
Confidence 987766642 211 11 1222221100 000
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP 387 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~ 387 (627)
+ ..+..+|.|++||+.+++.+..+..|..+
T Consensus 159 ----------------------------------------------~----~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 188 (408)
T 4a11_B 159 ----------------------------------------------V----AVGTRGPKVQLCDLKSGSCSHILQGHRQE 188 (408)
T ss_dssp ----------------------------------------------E----EEEESSSSEEEEESSSSCCCEEECCCCSC
T ss_pred ----------------------------------------------E----EEEcCCCeEEEEeCCCcceeeeecCCCCc
Confidence 0 02346899999999999999999999999
Q ss_pred eEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC--CCceeEEEEEeecCCcCcEEEEEEccCCCEE
Q 046828 388 ISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW--TSSHVHLYKLHRGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 388 Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~--~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~L 464 (627)
|.+++|+|+|. +|++++.||+ |+|||+.... .. ...... ......+.....++ ...|.+++|+||+++|
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSR-VKLWDVRRAS-----GC-LITLDQHNGKKSQAVESANTAH-NGKVNGLCFTSDGLHL 260 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSC-EEEEETTCSS-----CC-SEECCTTTTCSCCCTTTSSCSC-SSCEEEEEECTTSSEE
T ss_pred EEEEEECCCCCcEEEEEcCCCc-EEEEECCCCC-----cc-cccccccccccceeeccccccc-cCceeEEEEcCCCCEE
Confidence 99999999999 6999999998 8999986211 00 000000 00000000001233 2459999999999999
Q ss_pred EEEeCCCeEEEEEcCCCC
Q 046828 465 AIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 465 as~S~dgTvhIw~i~~~g 482 (627)
++++.||+|++|++....
T Consensus 261 ~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp EEEETTSCEEEEETTTCC
T ss_pred EEecCCCeEEEEECCCCc
Confidence 999999999999998644
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-18 Score=176.58 Aligned_cols=189 Identities=9% Similarity=0.104 Sum_probs=139.5
Q ss_pred cEEEEEECCCCceEEEEe---cCCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 180 TAVRFYSLRSHNYVHVLR---FRSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~---f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
++|+|||+.+++....++ +...|.+++|++ ++|+++. ++.|++||+.+ +.+..+..+.... .
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~-------~--- 164 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD-------Y--- 164 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS-------C---
T ss_pred CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC-------C---
Confidence 569999999999988886 556999999987 5777775 56899999986 5555665443110 0
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
.+ ..+++.++... +
T Consensus 165 ~v-------~~~~~~~~~~~---------------------------------------l-------------------- 178 (383)
T 3ei3_B 165 WY-------CCVDVSVSRQM---------------------------------------L-------------------- 178 (383)
T ss_dssp CE-------EEEEEETTTTE---------------------------------------E--------------------
T ss_pred Ce-------EEEEECCCCCE---------------------------------------E--------------------
Confidence 01 22344332100 0
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGT-LLVTASIHGNNIN 411 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~ 411 (627)
..+..||.|++||+ +++.+..+.+|..+|.+++|+|+|. +|++++.||+ |+
T Consensus 179 --------------------------~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~ 230 (383)
T 3ei3_B 179 --------------------------ATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VK 230 (383)
T ss_dssp --------------------------EEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EE
T ss_pred --------------------------EEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EE
Confidence 02347899999999 5778899999999999999999999 9999999997 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
|||+..... .+ ..+..+ ++. ..|.+++|+| |+++|++++.||+|+||++........+..|
T Consensus 231 iwd~~~~~~---~~------------~~~~~~--~~~-~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 231 LWDLRNIKD---KN------------SYIAEM--PHE-KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp EEEGGGCCS---TT------------CEEEEE--ECS-SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred EEeCCCCCc---cc------------ceEEEe--cCC-CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 999962110 01 133333 343 4699999999 9999999999999999999877665555555
Q ss_pred c
Q 046828 491 N 491 (627)
Q Consensus 491 ~ 491 (627)
.
T Consensus 293 ~ 293 (383)
T 3ei3_B 293 P 293 (383)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-19 Score=190.61 Aligned_cols=111 Identities=14% Similarity=0.251 Sum_probs=87.4
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
++.+|.|+|||+.. +.+..+.+|..+|.+|+|+|++. +|++++.||+ |+|||+.... .. .
T Consensus 227 g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~-----~~------------~ 287 (435)
T 4e54_B 227 GDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVR-----GK------------A 287 (435)
T ss_dssp ECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCC-----SS------------S
T ss_pred EeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEeccccc-----cc------------c
Confidence 45789999999975 56778999999999999999986 8899999998 7999986211 00 0
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
......+|. ..|.+|+|+||+++|++++.||+|+||++........+..|.
T Consensus 288 ~~~~~~~h~-~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 288 SFLYSLPHR-HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp CCSBCCBCS-SCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred eEEEeeecc-ccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 111123444 359999999999999999999999999998876666666654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.4e-19 Score=186.92 Aligned_cols=259 Identities=13% Similarity=0.088 Sum_probs=140.1
Q ss_pred CeEEEEeccCcEEEEecCCCCCce----EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVS----ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH 156 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~----ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~ 156 (627)
..++..+.|+.++|||+....... ..+..|.+.|..|.+.|........|+ .+||.++
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-----~~las~s------------- 163 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-----QVIASVG------------- 163 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-----EEEEEEE-------------
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-----CEEEEEE-------------
Confidence 346667778999999999754221 124568999999999875322111122 4555332
Q ss_pred ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE-ecCCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCcee
Q 046828 157 VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL-RFRSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLESK 231 (627)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL-~f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e~~ 231 (627)
.+++|+|||++++.++..+ .++++|.+|+|+| ++|+++. ++.|++||+.+++..
T Consensus 164 ---------------------~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 164 ---------------------DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp ---------------------TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred ---------------------CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 2488999999988776655 5888999999997 4677775 558999999998876
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ 311 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~ 311 (627)
..+..++... ....++....-+..... ..
T Consensus 223 ~~~~~~~~~~-----------~~~~~s~~~~~~~~~~~-----~~----------------------------------- 251 (393)
T 4gq1_A 223 EENSQTELVK-----------NPWLLTLNTLPLVNTCH-----SS----------------------------------- 251 (393)
T ss_dssp --------CS-----------CCCSEEEESGGGC----------------------------------------------
T ss_pred ccccccCCcc-----------cceEEecccccceeeee-----cc-----------------------------------
Confidence 6654433210 00111111110000000 00
Q ss_pred hhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEE
Q 046828 312 LAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISA 390 (627)
Q Consensus 312 l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~ 390 (627)
++... ..+. ++ .||+. .+ ..+..|+.|+|||+.+++....+..|...+..
T Consensus 252 --------~~~~~v~~v~-~~---~~dg~-------------~l----~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~ 302 (393)
T 4gq1_A 252 --------GIASSLANVR-WI---GSDGS-------------GI----LAMCKSGAWLRWNLFANNDYNEISDSTMKLGP 302 (393)
T ss_dssp --------CCSSSCSEEE-EE---TTTTC-------------EE----EEECTTSEEEEEEC------------------
T ss_pred --------cccccceeee-ee---cCCCC-------------EE----EEEeCCCCEEEEECccCCCCceEeeecCcccc
Confidence 00000 0000 00 01110 11 13568999999999988877777777766665
Q ss_pred EEECC--------------------CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 391 LCFDR--------------------SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 391 laFsp--------------------dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
++|.| ++.++++++.||+ |+|||+. ++. .+..+. ++. .
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~-------~~~------------~~~~~~-~~~-~ 360 (393)
T 4gq1_A 303 KNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-IQLINTY-------EKD------------SNSIPI-QLG-M 360 (393)
T ss_dssp -CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-EEEEETT-------CTT------------CCEEEE-ECS-S
T ss_pred EEEccccccccccCcceeEEEccCCCCEEEEEECCCCE-EEEEECC-------CCc------------EEEEec-CCC-C
Confidence 55544 4557888999997 8999986 221 222232 333 3
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.|.+|+|||||++||+++++| +.||++.-+
T Consensus 361 ~V~svafspdG~~LA~as~~G-v~lvrL~gf 390 (393)
T 4gq1_A 361 PIVDFCWHQDGSHLAIATEGS-VLLTRLMGF 390 (393)
T ss_dssp CEEEEEECTTSSEEEEEESSE-EEEEEEGGG
T ss_pred cEEEEEEcCCCCEEEEEeCCC-eEEEEEeCc
Confidence 599999999999999998765 666766543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-18 Score=178.95 Aligned_cols=247 Identities=11% Similarity=0.036 Sum_probs=171.5
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
.+.+.|..+.|... ....+++.+.++.++|||+...+ +....+..|.+.|..+.+.|..
T Consensus 79 ~h~~~V~~~~~~p~-----~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---------- 143 (402)
T 2aq5_A 79 GHTAPVLDIAWCPH-----NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA---------- 143 (402)
T ss_dssp CCSSCEEEEEECTT-----CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB----------
T ss_pred cCCCCEEEEEeCCC-----CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC----------
Confidence 46788999999642 22567777778889999999864 3345666788999999987652
Q ss_pred CCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE--e-cCCeEEEEEecC-
Q 046828 134 NSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL--R-FRSTVYMVRCSP- 209 (627)
Q Consensus 134 ~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL--~-f~s~V~sV~~s~- 209 (627)
..+|+... .+++|++||+++++.+.++ . +...|.++++++
T Consensus 144 --~~~l~s~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 187 (402)
T 2aq5_A 144 --QNVLLSAG----------------------------------CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187 (402)
T ss_dssp --TTEEEEEE----------------------------------TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT
T ss_pred --CCEEEEEc----------------------------------CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC
Confidence 13554322 1366999999999999999 4 567999999986
Q ss_pred -cEEEEEe-CCeEEEEeCCCCceeEEE-EcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCC
Q 046828 210 -RIVAVGL-AAQIYCFDALTLESKFSV-LTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSL 284 (627)
Q Consensus 210 -~~LaV~~-~~~I~i~D~~t~e~~~tl-~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~ 284 (627)
++|+++. ++.|++||+.+++.+.++ ..|.... ...+++.+ ++|+.+.
T Consensus 188 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~g~---------------- 239 (402)
T 2aq5_A 188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR------------PVHAVFVSEGKILTTGF---------------- 239 (402)
T ss_dssp SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS------------CCEEEECSTTEEEEEEE----------------
T ss_pred CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc------------ceEEEEcCCCcEEEEec----------------
Confidence 5676665 668999999999988887 4543210 11122211 1111110
Q ss_pred CCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCC
Q 046828 285 TPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIA 364 (627)
Q Consensus 285 t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~d 364 (627)
....+
T Consensus 240 ---------------------------------------------------------------------------~~~~d 244 (402)
T 2aq5_A 240 ---------------------------------------------------------------------------SRMSE 244 (402)
T ss_dssp ---------------------------------------------------------------------------CTTCC
T ss_pred ---------------------------------------------------------------------------cCCCC
Confidence 11468
Q ss_pred CeEEEEECCCCeE-EEEec-cCCCCeEEEEECCCCCEEEE-EeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVSRSV-ISQFR-AHTSPISALCFDRSGTLLVT-ASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s~~~-l~~~~-aH~~~Is~laFspdG~lLaT-aS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
|.|+|||+.+.+. +..+. .|...|.+++|+|+|.+|++ ++.||+ |+|||+. ++. ..+.
T Consensus 245 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~-------~~~-----------~~~~ 305 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEIT-------SEA-----------PFLH 305 (402)
T ss_dssp EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEEC-------SST-----------TCEE
T ss_pred ceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEec-------CCC-----------cceE
Confidence 9999999998654 33333 57788999999999999975 557887 8999986 221 0122
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+..-.....|.+++|+||++++++ .++++++|++...
T Consensus 306 ~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 306 YLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred eecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 2221112345999999999999874 5779999999863
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-18 Score=194.08 Aligned_cols=219 Identities=14% Similarity=0.183 Sum_probs=167.1
Q ss_pred ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEE
Q 046828 103 VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAV 182 (627)
Q Consensus 103 ~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV 182 (627)
+...+..|.+.|+++.+.|.. ++||+.. .+++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~-------------~~la~~~----------------------------------~~g~v 37 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTE-------------PWVLTTL----------------------------------YSGRV 37 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSS-------------SEEEEEE----------------------------------TTSEE
T ss_pred cceeeecCCCceEEEEECCCC-------------CEEEEEe----------------------------------CCCEE
Confidence 356778899999999987742 7776532 12679
Q ss_pred EEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceee
Q 046828 183 RFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMA 258 (627)
Q Consensus 183 ~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iA 258 (627)
+|||+++++.+.++. +..+|.+++|++ ++|+++. ++.|++||+.+++.+.++.+|..+ +..
T Consensus 38 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-------------v~~-- 102 (814)
T 3mkq_A 38 EIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRS-- 102 (814)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEE--
T ss_pred EEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC-------------EEE--
Confidence 999999999999998 556999999997 6777776 568999999999999988877543 222
Q ss_pred EcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCC
Q 046828 259 VGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDG 338 (627)
Q Consensus 259 l~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g 338 (627)
+++.++... +
T Consensus 103 -----~~~s~~~~~---------------------------------------l-------------------------- 112 (814)
T 3mkq_A 103 -----IAVHPTKPY---------------------------------------V-------------------------- 112 (814)
T ss_dssp -----EEECSSSSE---------------------------------------E--------------------------
T ss_pred -----EEEeCCCCE---------------------------------------E--------------------------
Confidence 333332100 0
Q ss_pred CCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCC
Q 046828 339 SSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 339 ~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..++.||.|+|||+.++ .....+..|..+|.+++|+| +|.+|++++.||+ |++||+.
T Consensus 113 --------------------~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~vwd~~ 171 (814)
T 3mkq_A 113 --------------------LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLG 171 (814)
T ss_dssp --------------------EEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEETT
T ss_pred --------------------EEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe-EEEEECC
Confidence 01346899999999987 77788999999999999999 8999999999997 8999985
Q ss_pred CCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 417 p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
.+. ....+..+ ....|..++|+| |+++|++++.||+|++|++........+..|...+
T Consensus 172 -------~~~------------~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v 231 (814)
T 3mkq_A 172 -------QST------------PNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (814)
T ss_dssp -------CSS------------CSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred -------CCc------------ceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 121 22333332 334589999999 99999999999999999997755555566665443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=168.45 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=77.6
Q ss_pred CCCCCeEEEEECCCCeEEEEec-------------cCCCCeEEEEECCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFR-------------AHTSPISALCFDRS---GTLLVTASIHGNNINIFRIMPSSSKGRS 424 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~-------------aH~~~Is~laFspd---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~ 424 (627)
+..||.|+|||+.+++.+..+. .|...|.+++|+|+ +.+|++++.+|. +.+|+.. .
T Consensus 130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~-------~ 201 (351)
T 3f3f_A 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGK-------D 201 (351)
T ss_dssp EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECT-------T
T ss_pred ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccC-------C
Confidence 3578999999998876443333 68889999999998 999999999997 5666543 1
Q ss_pred CCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC----CEEEEEeCCCeEEEEEcCCC
Q 046828 425 GSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS----QWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 425 g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg----~~Las~S~dgTvhIw~i~~~ 481 (627)
+. ........++. ..|.+++|+|++ ++|++++.||+|+||++...
T Consensus 202 ~~-----------~~~~~~~~~h~-~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 202 GK-----------LHVAAKLPGHK-SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp SC-----------EEEEEECCCCC-SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred Cc-----------eeeeeecCCCC-cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 21 12233335654 459999999998 89999999999999999864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-17 Score=194.33 Aligned_cols=239 Identities=10% Similarity=0.116 Sum_probs=165.5
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|+.. .+.+++.+.++.++|||..... ......|.++|..+++.| - .+|
T Consensus 15 gh~~~V~~lafspd------g~~lAsgs~Dg~I~lw~~~~~~--~~~~~~~~~~V~~l~fsp-g-------------~~L 72 (902)
T 2oaj_A 15 GMSSKPIAAAFDFT------QNLLAIATVTGEVHIYGQQQVE--VVIKLEDRSAIKEMRFVK-G-------------IYL 72 (902)
T ss_dssp ECSSCEEEEEEETT------TTEEEEEETTSEEEEECSTTCE--EEEECSSCCCEEEEEEET-T-------------TEE
T ss_pred CCCCCcEEEEECCC------CCEEEEEeCCCEEEEEeCCCcE--EEEEcCCCCCEEEEEEcC-C-------------CEE
Confidence 45678999999742 3566777778889999987633 122224678899999886 2 345
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL- 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~- 216 (627)
+.+. .+++|+|||+++++.++++.++..|.+|+|++ ++|+++.
T Consensus 73 ~S~s----------------------------------~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~ 118 (902)
T 2oaj_A 73 VVIN----------------------------------AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ 118 (902)
T ss_dssp EEEE----------------------------------TTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET
T ss_pred EEEE----------------------------------CcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC
Confidence 4332 13789999999999999999889999999997 7888876
Q ss_pred CCeEEEEeCCCCcee-EEE----------EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCC
Q 046828 217 AAQIYCFDALTLESK-FSV----------LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLT 285 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~-~tl----------~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t 285 (627)
++.|++||+.+++.. +.+ .+|..+ + .-|++.+.+.
T Consensus 119 dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~-------------V-------~sl~~sp~~~-------------- 164 (902)
T 2oaj_A 119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP-------------I-------VSIQWNPRDI-------------- 164 (902)
T ss_dssp TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC-------------C-------CEEEEETTEE--------------
T ss_pred CCcEEEEECCCCccccceeccccccccccccCCCC-------------e-------EEEEEccCCC--------------
Confidence 558999999988753 121 011110 1 1223222100
Q ss_pred CCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCC
Q 046828 286 PPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAG 365 (627)
Q Consensus 286 ~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG 365 (627)
+.+ ..+..+|
T Consensus 165 ------------------------------------------------------------------~~l----~~g~~dg 174 (902)
T 2oaj_A 165 ------------------------------------------------------------------GTV----LISYEYV 174 (902)
T ss_dssp ------------------------------------------------------------------EEE----EEECSSC
T ss_pred ------------------------------------------------------------------CEE----EEEeCCC
Confidence 000 1235789
Q ss_pred eEEEEECCCCeEEEEeccC------------------CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCC
Q 046828 366 MVVVKDIVSRSVISQFRAH------------------TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSA 427 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH------------------~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~ 427 (627)
.| |||+.+++.+..|..| ..+|.+++|+|||++|||++.||+ |+|||+. +|.
T Consensus 175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~-------~g~- 244 (902)
T 2oaj_A 175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDAN-------SGH- 244 (902)
T ss_dssp EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETT-------TCC-
T ss_pred cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECC-------CCc-
Confidence 99 9999999998888766 578999999999999999999998 8999986 232
Q ss_pred ccccCCCCceeEEEE--Ee--ecC------------CcCcEEEEEEc----cCC-CEEEEEeCC-----CeEEEEEcC
Q 046828 428 SQTYDWTSSHVHLYK--LH--RGM------------TSAVIQDICFS----HYS-QWIAIVSSR-----GTCHIFVLT 479 (627)
Q Consensus 428 ~~~~~~~~~~~~l~~--l~--rG~------------t~a~I~sIaFS----pDg-~~Las~S~d-----gTvhIw~i~ 479 (627)
.+.. +. .++ ....|.+++|+ ||+ .+|++++.+ .++++|++.
T Consensus 245 -----------~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 245 -----------MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp -----------EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred -----------EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 2221 11 112 12359999995 454 567777665 389999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-17 Score=173.94 Aligned_cols=177 Identities=14% Similarity=0.189 Sum_probs=137.7
Q ss_pred CcEEEEEECCCCceEEEEec--CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRF--RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f--~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
+++|++||+.+++.+..+.. ...|.+|++++ ++|+++. ++.|++||+.+++.+.++.+|..+
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------- 178 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------- 178 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc-------------
Confidence 57899999999999988885 56999999987 6888876 568999999999988888766543
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+..+++.++.|+.
T Consensus 179 v~~~~~~~~~l~~------------------------------------------------------------------- 191 (401)
T 4aez_A 179 VGCLSWNRHVLSS------------------------------------------------------------------- 191 (401)
T ss_dssp EEEEEEETTEEEE-------------------------------------------------------------------
T ss_pred eEEEEECCCEEEE-------------------------------------------------------------------
Confidence 2233333332222
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV-SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINI 412 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~V 412 (627)
++.+|.|++||+. ....+..+..|..+|.+++|+|+|.+|++++.||+ |+|
T Consensus 192 ---------------------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-v~i 243 (401)
T 4aez_A 192 ---------------------------GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV-VQI 243 (401)
T ss_dssp ---------------------------EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEE
T ss_pred ---------------------------EcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe-EEE
Confidence 2467899999998 56778899999999999999999999999999998 899
Q ss_pred EeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC-EEEEEe--CCCeEEEEEcCCCCCe
Q 046828 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ-WIAIVS--SRGTCHIFVLTPFGGE 484 (627)
Q Consensus 413 wdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~-~Las~S--~dgTvhIw~i~~~gg~ 484 (627)
||+. .+ ..+..+ .++. ..|.+++|+|++. ++++++ .|++|++|++......
T Consensus 244 wd~~-------~~------------~~~~~~-~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 244 WDAR-------SS------------IPKFTK-TNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EETT-------CS------------SEEEEE-CCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred ccCC-------CC------------CccEEe-cCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 9986 22 144444 3443 4599999999875 455544 6999999999865433
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-16 Score=162.91 Aligned_cols=246 Identities=11% Similarity=0.081 Sum_probs=169.9
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEe-ccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLG-YSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~G-y~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
++.+..+.|.. ..+.+++.+ .++.+++||+.... +...+..+ +.+..+.+.|.- ..|+
T Consensus 31 ~~~~~~~~~s~------dg~~l~~~~~~d~~i~v~d~~~~~-~~~~~~~~-~~v~~~~~spdg-------------~~l~ 89 (391)
T 1l0q_A 31 GSNPMGAVISP------DGTKVYVANAHSNDVSIIDTATNN-VIATVPAG-SSPQGVAVSPDG-------------KQVY 89 (391)
T ss_dssp SSSEEEEEECT------TSSEEEEEEGGGTEEEEEETTTTE-EEEEEECS-SSEEEEEECTTS-------------SEEE
T ss_pred CCCcceEEECC------CCCEEEEECCCCCeEEEEECCCCe-EEEEEECC-CCccceEECCCC-------------CEEE
Confidence 34577777753 235665555 78889999998754 33334333 366777776532 5555
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEE-EEEe-
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIV-AVGL- 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~L-aV~~- 216 (627)
+... .+++|++||+++++.+..+..+..+.++++++ +.| +++.
T Consensus 90 ~~~~---------------------------------~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 90 VTNM---------------------------------ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp EEET---------------------------------TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT
T ss_pred EEEC---------------------------------CCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCC
Confidence 4321 12679999999999999999888999999987 455 4554
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
+++|++||+.+++.+..+..+..+ .-+++.++...
T Consensus 137 ~~~v~~~d~~~~~~~~~~~~~~~~---------------------~~~~~~~dg~~------------------------ 171 (391)
T 1l0q_A 137 DKTVSVINTVTKAVINTVSVGRSP---------------------KGIAVTPDGTK------------------------ 171 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECCSSE---------------------EEEEECTTSSE------------------------
T ss_pred CCEEEEEECCCCcEEEEEecCCCc---------------------ceEEECCCCCE------------------------
Confidence 568999999999887777543221 22333332100
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~ 376 (627)
+ .+ .+..+|.|++||+.+++
T Consensus 172 ---------------l-------------~~--------------------------------~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 172 ---------------V-------------YV--------------------------------ANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ---------------E-------------EE--------------------------------EETTTTEEEEEETTTTE
T ss_pred ---------------E-------------EE--------------------------------EeCCCCEEEEEECCCCe
Confidence 0 00 12357899999999998
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEe---CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTAS---IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS---~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~ 453 (627)
.+..+. |...+.+++|+|+|++|++++ .+++ |++||+. ++ ..+..+. .+ ..+.
T Consensus 192 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~-------~~------------~~~~~~~-~~--~~~~ 247 (391)
T 1l0q_A 192 VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTG-------TN------------KITARIP-VG--PDPA 247 (391)
T ss_dssp EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETT-------TT------------EEEEEEE-CC--SSEE
T ss_pred EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCc-EEEEECC-------CC------------eEEEEEe-cC--CCcc
Confidence 887776 456789999999999999988 5676 8999985 23 2344443 32 2489
Q ss_pred EEEEccCCCEE-EEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 454 DICFSHYSQWI-AIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 454 sIaFSpDg~~L-as~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
+++|+||+++| ++++.|++|++|++........+..|
T Consensus 248 ~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 248 GIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 99999999988 56688999999999875444444444
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-16 Score=166.34 Aligned_cols=237 Identities=8% Similarity=0.030 Sum_probs=165.9
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
...|..+.|.. ..+.++..+.++.+++||++... ....+..+...+..+.+.|.- ..|++
T Consensus 169 ~~~v~~~~~~~------~~~~~~s~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~l~~ 228 (433)
T 3bws_A 169 LGFVETISIPE------HNELWVSQMQANAVHVFDLKTLA-YKATVDLTGKWSKILLYDPIR-------------DLVYC 228 (433)
T ss_dssp CCEEEEEEEGG------GTEEEEEEGGGTEEEEEETTTCC-EEEEEECSSSSEEEEEEETTT-------------TEEEE
T ss_pred CCceeEEEEcC------CCEEEEEECCCCEEEEEECCCce-EEEEEcCCCCCeeEEEEcCCC-------------CEEEE
Confidence 33555566632 12444455567889999998755 344445567777888877542 45544
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe---
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--- 216 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--- 216 (627)
... .+++|++||+++++.+..+.....+.++++++ +.|+++.
T Consensus 229 ~~~---------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 275 (433)
T 3bws_A 229 SNW---------------------------------ISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSA 275 (433)
T ss_dssp EET---------------------------------TTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEES
T ss_pred Eec---------------------------------CCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCC
Confidence 320 12679999999999999998888999999987 5777665
Q ss_pred ------CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 217 ------AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 217 ------~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
+++|++||+.+++.+..+.. +. .++.+++.++...
T Consensus 276 ~~~~~~dg~i~~~d~~~~~~~~~~~~-~~--------------------~~~~~~~~~~g~~------------------ 316 (433)
T 3bws_A 276 SNQESGGGRLGIYSMDKEKLIDTIGP-PG--------------------NKRHIVSGNTENK------------------ 316 (433)
T ss_dssp CTTCSCCEEEEEEETTTTEEEEEEEE-EE--------------------CEEEEEECSSTTE------------------
T ss_pred CccccCCCeEEEEECCCCcEEeeccC-CC--------------------CcceEEECCCCCE------------------
Confidence 45899999999876655421 11 1133444432100
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
++ + .+..++.|++|
T Consensus 317 -------------------------l~---------~--------------------------------~~~~~~~v~v~ 330 (433)
T 3bws_A 317 -------------------------IY---------V--------------------------------SDMCCSKIEVY 330 (433)
T ss_dssp -------------------------EE---------E--------------------------------EETTTTEEEEE
T ss_pred -------------------------EE---------E--------------------------------EecCCCEEEEE
Confidence 00 0 12467899999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---------------CCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI---------------HGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~---------------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
|+.+++.+..+. |...+.+++|+|+|++|++++. ||+ |++||+. ++
T Consensus 331 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~-------~~---------- 391 (433)
T 3bws_A 331 DLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTT-------TD---------- 391 (433)
T ss_dssp ETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETT-------TT----------
T ss_pred ECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECC-------CC----------
Confidence 999998888776 6778999999999999999887 455 8999985 23
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTP 480 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~ 480 (627)
..+..+ .+. ..+.+++|+||+++|++++. |++|+||+++.
T Consensus 392 --~~~~~~-~~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 392 --TVKEFW-EAG--NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp --EEEEEE-ECS--SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred --cEEEEe-cCC--CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 133333 332 35899999999999998875 99999999874
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-16 Score=164.84 Aligned_cols=232 Identities=14% Similarity=0.093 Sum_probs=160.6
Q ss_pred eEEEEe-ccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 82 HVLLLG-YSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 82 ~vl~~G-y~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.+++.| .++.+++||++... +...+..+. .+..+.+.|.. ..|++...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-~~~~~~~~~-~~~~~~~s~dg-------------~~l~~~~~---------------- 51 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-VTATIPVGS-NPMGAVISPDG-------------TKVYVANA---------------- 51 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-EEEEEECSS-SEEEEEECTTS-------------SEEEEEEG----------------
T ss_pred EEEEEcCCCCEEEEEECCCCe-EEEEeecCC-CcceEEECCCC-------------CEEEEECC----------------
Confidence 445544 57789999998754 344444443 45677776542 45544320
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEEc
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~~ 236 (627)
.+++|++||+++++.+.++..+..|.++++++ +.|+++. ++.|++||+.+++.+..+..
T Consensus 52 -----------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 52 -----------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp -----------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred -----------------CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 12679999999999999999888999999997 5665544 46899999999988777654
Q ss_pred CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcce
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGL 316 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl 316 (627)
+.. . ..+++.++... +
T Consensus 115 ~~~--------------~-------~~~~~s~dg~~-------------------------------------------l 130 (391)
T 1l0q_A 115 GKS--------------P-------LGLALSPDGKK-------------------------------------------L 130 (391)
T ss_dssp SSS--------------E-------EEEEECTTSSE-------------------------------------------E
T ss_pred CCC--------------c-------ceEEECCCCCE-------------------------------------------E
Confidence 321 1 22333332100 0
Q ss_pred eecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC
Q 046828 317 INLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS 396 (627)
Q Consensus 317 ~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd 396 (627)
.+ .+..++.|++||+.+++.+..+..|. .+..++|+|+
T Consensus 131 ---------~~--------------------------------~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~d 168 (391)
T 1l0q_A 131 ---------YV--------------------------------TNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPD 168 (391)
T ss_dssp ---------EE--------------------------------EETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTT
T ss_pred ---------EE--------------------------------EeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCC
Confidence 00 12357899999999999988888764 5699999999
Q ss_pred CCEE-EEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe---CCCe
Q 046828 397 GTLL-VTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS---SRGT 472 (627)
Q Consensus 397 G~lL-aTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S---~dgT 472 (627)
|++| ++++.+|+ |++||+. ++ ..+..+ .. ...+.+++|+||+++|++++ .+++
T Consensus 169 g~~l~~~~~~~~~-v~~~d~~-------~~------------~~~~~~-~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 169 GTKVYVANFDSMS-ISVIDTV-------TN------------SVIDTV-KV--EAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp SSEEEEEETTTTE-EEEEETT-------TT------------EEEEEE-EC--SSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred CCEEEEEeCCCCE-EEEEECC-------CC------------eEEEEE-ec--CCCccceEECCCCCEEEEEecCcCCCc
Confidence 9988 56677776 8999985 22 133333 22 23589999999999999998 6999
Q ss_pred EEEEEcCCCCCeeecccc
Q 046828 473 CHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 473 vhIw~i~~~gg~~~~~~h 490 (627)
|++|++........+..|
T Consensus 226 v~~~d~~~~~~~~~~~~~ 243 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVG 243 (391)
T ss_dssp EEEEETTTTEEEEEEECC
T ss_pred EEEEECCCCeEEEEEecC
Confidence 999999765433334333
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-16 Score=162.06 Aligned_cols=182 Identities=13% Similarity=0.089 Sum_probs=130.6
Q ss_pred CcEEEEEECCCCc-----eEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcC
Q 046828 179 PTAVRFYSLRSHN-----YVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSG 249 (627)
Q Consensus 179 ~~tV~lwdl~t~~-----~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~ 249 (627)
+++|+|||+.+.+ ++++++. ...|.++.|++ ++|+++. ++.|++|+....+.......+...
T Consensus 60 D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~--------- 130 (340)
T 4aow_A 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--------- 130 (340)
T ss_dssp TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------
T ss_pred CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc---------
Confidence 3679999998754 4566764 46999999997 6777765 568999999988766655443221
Q ss_pred cccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEee
Q 046828 250 VNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSR 329 (627)
Q Consensus 250 ~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~ 329 (627)
. ..+.+......
T Consensus 131 ----~-------~~~~~~~~~~~--------------------------------------------------------- 142 (340)
T 4aow_A 131 ----V-------LSVAFSSDNRQ--------------------------------------------------------- 142 (340)
T ss_dssp ----E-------EEEEECTTSSC---------------------------------------------------------
T ss_pred ----e-------eEEEEeecCcc---------------------------------------------------------
Confidence 0 01112211000
Q ss_pred eeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE-EEEeccCCCCeEEEEECCCC--CEEEEEeCC
Q 046828 330 YYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV-ISQFRAHTSPISALCFDRSG--TLLVTASIH 406 (627)
Q Consensus 330 y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~-l~~~~aH~~~Is~laFspdG--~lLaTaS~d 406 (627)
+ ..+..||.+++||+..... ...+.+|...|..++|++++ .++++++.|
T Consensus 143 ------------------------l----~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 143 ------------------------I----VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp ------------------------E----EEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ------------------------c----eeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 0 1235789999999987654 44567899999999999875 578999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeee
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~ 486 (627)
++ |++||+. ++ ..+..+ .+++. .|.+|+|+||+++|++++.||+|+||++........
T Consensus 195 ~~-i~i~d~~-------~~------------~~~~~~-~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 195 KL-VKVWNLA-------NC------------KLKTNH-IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp SC-EEEEETT-------TT------------EEEEEE-CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred CE-EEEEECC-------CC------------ceeeEe-cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 98 8999986 22 133333 67654 599999999999999999999999999986544433
Q ss_pred c
Q 046828 487 L 487 (627)
Q Consensus 487 ~ 487 (627)
+
T Consensus 253 ~ 253 (340)
T 4aow_A 253 L 253 (340)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-17 Score=164.53 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=158.6
Q ss_pred CcEEEEEECCCCceEEEEecC---CeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR---STVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
+++|+|||+++++.+++++++ ..|.+|++++ ++|++|. +++|++||+.+++.+.++.+|...
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------ 111 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------ 111 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce------------
Confidence 377999999999999999753 3799999997 7888876 558999999999999999887653
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
...++..++.|+.++.+..+..+... ....... ...++........+
T Consensus 112 -~~~~~~~~~~l~s~~~~~~~~~~~~~----------------------------~~~~~~~--~~~~~~~~~~~~~~-- 158 (318)
T 4ggc_A 112 -VGSLSWNSYILSSGSRSGHIHHHDVR----------------------------VAEHHVA--TLSGHSQEVCGLRW-- 158 (318)
T ss_dssp -EEEEEEETTEEEEEETTSEEEEEETT----------------------------SSSCEEE--EEECCSSCEEEEEE--
T ss_pred -EEEeecCCCEEEEEecCCceEeeecC----------------------------CCceeEE--EEcCccCceEEEEE--
Confidence 34466677888888765433211100 0000000 00111111111000
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe----EEEEeccCCCCeEEEEECCCCCEE---EEEeC
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS----VISQFRAHTSPISALCFDRSGTLL---VTASI 405 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~----~l~~~~aH~~~Is~laFspdG~lL---aTaS~ 405 (627)
.++ +.. ...+..||.|+|||+.+++ .+.....|..+|.+++|+|++..+ ++++.
T Consensus 159 --~~~--------------~~~---l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 159 --APD--------------GRH---LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp --CTT--------------SSE---EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred --cCC--------------CCE---EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 011 111 1245689999999998764 355667788999999999987633 46677
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe--CCCeEEEEEcCCCCC
Q 046828 406 HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS--SRGTCHIFVLTPFGG 483 (627)
Q Consensus 406 dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S--~dgTvhIw~i~~~gg 483 (627)
+++ |+|||.. . +. ..... . ....|..++|+++++.+++++ .|++|+||++.....
T Consensus 220 ~~~-i~lwd~~-~------~~------------~~~~~-~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 220 DRH-IRIWNVC-S------GA------------CLSAV-D--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276 (318)
T ss_dssp TCE-EEEEETT-T------CC------------EEEEE-E--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred CCE-EEEEecc-c------cc------------ccccc-c--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence 776 8999985 1 11 22222 2 223599999999999998766 799999999988777
Q ss_pred eeecccccccccCCCCCCC
Q 046828 484 ETVLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 484 ~~~~~~h~s~v~~~~~~p~ 502 (627)
...+..|...+....+.|.
T Consensus 277 ~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 277 VAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp EEEECCCSSCEEEEEECTT
T ss_pred EEEEcCCCCCEEEEEEcCC
Confidence 7788888776554444443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-17 Score=174.98 Aligned_cols=255 Identities=16% Similarity=0.165 Sum_probs=172.2
Q ss_pred CcEEEEEECCCCceEEEEecC---CeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR---STVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
+++|+|||+.+++.++.++++ ..|.+|+|++ ++||+|. ++.|+|||+.+++.+.++.+|...
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------ 191 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------ 191 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc------------
Confidence 478999999999999988753 4799999997 7888886 558999999999999998887654
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
...++..++.|+.++.+..+.++... ........+ .++........+
T Consensus 192 -v~~~s~~~~~l~sgs~d~~i~~~d~~----------------------------~~~~~~~~~--~~h~~~~~~~~~-- 238 (420)
T 4gga_A 192 -VGSLSWNSYILSSGSRSGHIHHHDVR----------------------------VAEHHVATL--SGHSQEVCGLRW-- 238 (420)
T ss_dssp -EEEEEEETTEEEEEETTSEEEEEETT----------------------------SSSCEEEEE--ECCSSCEEEEEE--
T ss_pred -eEEEeeCCCEEEEEeCCCceeEeeec----------------------------ccceeeEEe--cccccceeeeee--
Confidence 45677888999998876554332110 000000000 011111000000
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe----EEEEeccCCCCeEEEEECCCC-CEEEEE--eC
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS----VISQFRAHTSPISALCFDRSG-TLLVTA--SI 405 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~----~l~~~~aH~~~Is~laFspdG-~lLaTa--S~ 405 (627)
.|+ |.. ...+..||.|+|||..+++ .+..+..|..+|.+++|+|++ .+|+++ +.
T Consensus 239 --~~~--------------g~~---l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 239 --APD--------------GRH---LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp --CTT--------------SSE---EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred --cCC--------------CCe---eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 111 111 1245689999999998764 466788899999999999965 566654 57
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe--CCCeEEEEEcCCCCC
Q 046828 406 HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS--SRGTCHIFVLTPFGG 483 (627)
Q Consensus 406 dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S--~dgTvhIw~i~~~gg 483 (627)
||+ |+|||+. ++ ..+..+. . ...|.++.|+++++.|++++ .|++|+||++.....
T Consensus 300 D~~-I~iwd~~-------t~------------~~~~~~~-~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 300 DRH-IRIWNVC-------SG------------ACLSAVD-A--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp TCE-EEEEETT-------TT------------EEEEEEE-C--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred CCE-EEEEeCC-------cc------------ccceeec-c--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence 887 8999986 33 2444443 2 23589999999999999876 799999999988777
Q ss_pred eeecccccccccCCCCCCCccCCCCCCCccccccCCC
Q 046828 484 ETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSF 520 (627)
Q Consensus 484 ~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~~~ 520 (627)
...+..|...+....+.|...+...-+.+-++..|++
T Consensus 357 v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 7788889876655445554433333333444555554
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-17 Score=193.77 Aligned_cols=175 Identities=12% Similarity=0.062 Sum_probs=130.2
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC-cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccce
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~ 256 (627)
+++|+|||..+.+.+..+.+..+|.+|+|++ ++|+++. ++.|+|||+.+++.+.++. ++.+ +..
T Consensus 38 Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~-------------V~~ 103 (902)
T 2oaj_A 38 TGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGK-------------ITS 103 (902)
T ss_dssp TSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSSC-------------EEE
T ss_pred CCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCCC-------------EEE
Confidence 3789999999998888777778999999997 6566665 5689999999999887774 3221 222
Q ss_pred eeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccC
Q 046828 257 MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIP 336 (627)
Q Consensus 257 iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p 336 (627)
+ ++.++... +
T Consensus 104 v-------~~sp~g~~---------------------------------------l------------------------ 113 (902)
T 2oaj_A 104 I-------DTDASLDW---------------------------------------M------------------------ 113 (902)
T ss_dssp E-------ECCTTCSE---------------------------------------E------------------------
T ss_pred E-------EECCCCCE---------------------------------------E------------------------
Confidence 3 33321100 0
Q ss_pred CCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEE-----------EEeccCCCCeEEEEECCC-CCEEEEEe
Q 046828 337 DGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVI-----------SQFRAHTSPISALCFDRS-GTLLVTAS 404 (627)
Q Consensus 337 ~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l-----------~~~~aH~~~Is~laFspd-G~lLaTaS 404 (627)
..+..||.|++||+.+++.. ..+++|..+|.+|+|+|+ +.+|++++
T Consensus 114 ----------------------~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 114 ----------------------LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp ----------------------EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred ----------------------EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 02346899999999988753 234679999999999996 57999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC-----------------CcCcEEEEEEccCCCEEEEE
Q 046828 405 IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM-----------------TSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 405 ~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~-----------------t~a~I~sIaFSpDg~~Las~ 467 (627)
.||+ | |||+. .+ ..+..+ .++ ....|.+++|+|||++||++
T Consensus 172 ~dg~-v-lWd~~-------~~------------~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 172 EYVT-L-TYSLV-------EN------------EIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp SSCE-E-EEETT-------TT------------EEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred CCCc-E-EEECC-------CC------------ceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence 9997 7 99986 22 123333 222 12359999999999999999
Q ss_pred eCCCeEEEEEcCCC
Q 046828 468 SSRGTCHIFVLTPF 481 (627)
Q Consensus 468 S~dgTvhIw~i~~~ 481 (627)
+.||+|+||++...
T Consensus 230 s~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 230 HEDNSLVFWDANSG 243 (902)
T ss_dssp ETTCCEEEEETTTC
T ss_pred ECCCeEEEEECCCC
Confidence 99999999999763
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-17 Score=172.36 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=82.2
Q ss_pred CCCeEEEEECCC-CeEEE-------EeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 363 IAGMVVVKDIVS-RSVIS-------QFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 363 ~dG~V~IwD~~s-~~~l~-------~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
.||.|+|||+.+ .+.+. .+..|...|.+++|+|+| .+|++++.||+ |+|||+. . +...
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~-~------~~~~----- 262 (447)
T 3dw8_B 196 DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMR-A------SALC----- 262 (447)
T ss_dssp CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETT-T------CSSS-----
T ss_pred CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECc-C------Cccc-----
Confidence 699999999994 44444 367899999999999999 99999999998 8999986 2 2100
Q ss_pred CCceeEEEEEeecCCc-----------CcEEEEEEccCCCEEEEEeCCCeEEEEEcCC-CCCeeeccccc
Q 046828 434 TSSHVHLYKLHRGMTS-----------AVIQDICFSHYSQWIAIVSSRGTCHIFVLTP-FGGETVLQIQN 491 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~-----------a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~-~gg~~~~~~h~ 491 (627)
. ..+..+ .++.. ..|.+++|+||+++|++++. ++|+||++.. ......+..|.
T Consensus 263 -~--~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 263 -D--RHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp -C--TTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred -c--ceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 0 001222 33332 26999999999999999999 9999999986 33344455553
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-17 Score=164.75 Aligned_cols=275 Identities=12% Similarity=0.068 Sum_probs=170.3
Q ss_pred ecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCC
Q 046828 96 DVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNV 175 (627)
Q Consensus 96 dv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 175 (627)
+..+.. ..+++..|++.|.++.+.|... + ..+|+...
T Consensus 25 ~~~~~~-~~~~~~~h~~~v~~~~~~~~~~-----~-----g~~l~~~~-------------------------------- 61 (368)
T 3mmy_A 25 NHNPMK-DIEVTSSPDDSIGCLSFSPPTL-----P-----GNFLIAGS-------------------------------- 61 (368)
T ss_dssp SSCTTC-CEECSSCCSSCEEEEEECCTTS-----S-----SEEEEEEE--------------------------------
T ss_pred CCCCcc-eeEeccCCCCceEEEEEcCCCC-----C-----ceEEEEEC--------------------------------
Confidence 344433 3567788999999999987520 0 14554322
Q ss_pred CcCCcEEEEEECCC-CceE-EEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcC
Q 046828 176 AMSPTAVRFYSLRS-HNYV-HVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSG 249 (627)
Q Consensus 176 ~~~~~tV~lwdl~t-~~~V-~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~ 249 (627)
.+++|+|||+++ ++.+ ..+. +...|.++++++ ++|+++. ++.|++||+.+++.+. +..|..+
T Consensus 62 --~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~--------- 129 (368)
T 3mmy_A 62 --WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP--------- 129 (368)
T ss_dssp --TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSC---------
T ss_pred --CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCc---------
Confidence 136799999998 6555 6666 566999999987 5777775 5689999999998665 4445443
Q ss_pred cccccceeeE--cC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCccee
Q 046828 250 VNIGYGPMAV--GP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYK 325 (627)
Q Consensus 250 ~~~~~~~iAl--~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~ 325 (627)
+..+++ .+ ++|+.++.+..+.+|..... + ....+. .+....
T Consensus 130 ----v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------------------------~-~~~~~~--~~~~~~ 174 (368)
T 3mmy_A 130 ----VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS----------------------------N-PMMVLQ--LPERCY 174 (368)
T ss_dssp ----EEEEEEEECSSCEEEEEEETTSEEEEECSSCS----------------------------S-CSEEEE--CSSCEE
T ss_pred ----eEEEEEEeCCCCCEEEEccCCCcEEEEECCCC----------------------------c-EEEEEe--cCCCce
Confidence 445665 44 67888877666554421100 0 000000 000000
Q ss_pred EEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEE-ec-cCCCCeEEEEECCCCCE----
Q 046828 326 TLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQ-FR-AHTSPISALCFDRSGTL---- 399 (627)
Q Consensus 326 ~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~-~~-aH~~~Is~laFspdG~l---- 399 (627)
.+.. ....+ ..+..++.+.+||+........ +. .+...+.++++.+++..
T Consensus 175 ~~~~--------------------~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 175 CADV--------------------IYPMA----VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp EEEE--------------------ETTEE----EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred EEEe--------------------cCCee----EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe
Confidence 0000 00000 1245688999999987654332 22 34566777877776665
Q ss_pred EEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC-----------cEEEEEEccCCCEEEEEe
Q 046828 400 LVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA-----------VIQDICFSHYSQWIAIVS 468 (627)
Q Consensus 400 LaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a-----------~I~sIaFSpDg~~Las~S 468 (627)
|++++.+|+ |+|||+.... . ...+..+ +++... .|.+++|+||+++|++++
T Consensus 231 ~~~~~~dg~-i~i~~~~~~~-----~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 231 FALGSIEGR-VAIHYINPPN-----P-----------AKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp EEEEETTSE-EEEEESSCSC-----H-----------HHHSEEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred EEEecCCCc-EEEEecCCCC-----c-----------cccceee-eeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 999999997 8999986211 0 0012222 233221 499999999999999999
Q ss_pred CCCeEEEEEcCCCCCeeecccccccccCCCCCCC
Q 046828 469 SRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 469 ~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~ 502 (627)
.||+|+||++........+..|...+....+.|.
T Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN 326 (368)
T ss_dssp TTSCEEEEETTTTEEEEECCCCSSCEEEEEECTT
T ss_pred cCCeEEEEECCCCcEEEEecCCCCCceEEEECCC
Confidence 9999999999876555566666654443334443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=171.22 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=83.5
Q ss_pred CCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
++.||.|+|||+.+++.+..+. .|..+|.+++|+|+|.+||+|+.||+ |+|||+. ++. .
T Consensus 145 ~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~-------~~~------------~ 204 (343)
T 3lrv_A 145 ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLS-------SPD------------Q 204 (343)
T ss_dssp EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESS-------CTT------------S
T ss_pred EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECC-------CCC------------C
Confidence 4579999999999999877775 45668999999999999999999998 8999996 221 2
Q ss_pred E-EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeec
Q 046828 440 L-YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVL 487 (627)
Q Consensus 440 l-~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~ 487 (627)
+ ..+..+|. ..|.+|+|+||+++|++++++ +|+||++........+
T Consensus 205 ~~~~~~~~h~-~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 205 ASSRFPVDEE-AKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAY 251 (343)
T ss_dssp CCEECCCCTT-SCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSS
T ss_pred CccEEeccCC-CCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceee
Confidence 2 33432254 469999999999999999954 9999999875543333
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=172.50 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=82.6
Q ss_pred CCCCCeEEEEECCCC---eEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 361 TDIAGMVVVKDIVSR---SVISQFRAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~---~~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+..+|.|+|||+.++ +.+..+.+|..+|.+|+|+|+|. +|++++.||+ |+|||+. .. +
T Consensus 250 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~-~~-----~----------- 311 (430)
T 2xyi_A 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLR-NL-----K----------- 311 (430)
T ss_dssp EETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETT-CT-----T-----------
T ss_pred EeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCC-CC-----C-----------
Confidence 357899999999987 57788899999999999999997 7999999998 8999986 21 1
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCC-EEEEEeCCCeEEEEEcCCCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQ-WIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~-~Las~S~dgTvhIw~i~~~g 482 (627)
..+..+ .++. ..|.+|+|+|+++ +|++++.||+|+||++...+
T Consensus 312 -~~~~~~-~~h~-~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 312 -LKLHSF-ESHK-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp -SCSEEE-ECCS-SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred -CCeEEe-ecCC-CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 123333 3443 4599999999995 69999999999999998744
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=183.56 Aligned_cols=210 Identities=14% Similarity=0.195 Sum_probs=146.1
Q ss_pred EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEE
Q 046828 105 ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRF 184 (627)
Q Consensus 105 ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~l 184 (627)
.++..|.++|.++.+.|.. .+|+..+ .+++|+|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg-------------~~latg~----------------------------------~dg~I~v 35 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG-------------KRLATCS----------------------------------SDKTIKI 35 (753)
T ss_dssp -----CCCCEEEECCCSSS-------------CCEEEEE----------------------------------TTTEEEE
T ss_pred eecccCcceeEEEEECCCC-------------CeEEEEE----------------------------------CCCcEEE
Confidence 4667899999999887643 4555432 1377999
Q ss_pred EECC--CCceEEEEe-cCCeEEEEEec----CcEEEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCcCccccc
Q 046828 185 YSLR--SHNYVHVLR-FRSTVYMVRCS----PRIVAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 185 wdl~--t~~~V~tL~-f~s~V~sV~~s----~~~LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
||+. +++.+.++. +..+|.+|+++ .++|+++. ++.|++||+.+++ ....+..|..+ +
T Consensus 36 wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-------------V 102 (753)
T 3jro_A 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-------------V 102 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------E
T ss_pred EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-------------e
Confidence 9998 556777887 55699999997 35777775 5689999999886 44444444332 2
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
.. +++.++.. +..
T Consensus 103 ~~-------v~~sp~~~--------------------------~~~---------------------------------- 115 (753)
T 3jro_A 103 NS-------VQWAPHEY--------------------------GPL---------------------------------- 115 (753)
T ss_dssp EE-------EEECCGGG--------------------------CSE----------------------------------
T ss_pred EE-------EEECCCCC--------------------------CCE----------------------------------
Confidence 22 33332100 000
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECC-------------CCCE
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDR-------------SGTL 399 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFsp-------------dG~l 399 (627)
+ ..++.||.|+|||+.++ .....+..|..+|.+++|+| +|.+
T Consensus 116 -------------------l----~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 116 -------------------L----LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp -------------------E----EEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred -------------------E----EEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence 0 12357899999999887 34556789999999999999 5999
Q ss_pred EEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccC---CCEEEEEeCCCeEEEE
Q 046828 400 LVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHY---SQWIAIVSSRGTCHIF 476 (627)
Q Consensus 400 LaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD---g~~Las~S~dgTvhIw 476 (627)
|++++.||+ |+|||+. . +. .. ..+.....+|. ..|.+++|+|| +++|++++.||+|+||
T Consensus 173 l~sgs~dg~-I~iwd~~-~------~~--------~~-~~~~~~~~~h~-~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 173 FVTGGADNL-VKIWKYN-S------DA--------QT-YVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp EEEEETTSC-EEEEEEE-T------TT--------TE-EEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred EEEEECCCe-EEEEecc-C------Cc--------cc-ceeeeeecCCC-CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 999999998 8999986 1 11 00 12222335654 45999999999 9999999999999999
Q ss_pred EcCCCC
Q 046828 477 VLTPFG 482 (627)
Q Consensus 477 ~i~~~g 482 (627)
++....
T Consensus 235 d~~~~~ 240 (753)
T 3jro_A 235 TQDNEQ 240 (753)
T ss_dssp EESSSS
T ss_pred cCCCCC
Confidence 998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-15 Score=162.66 Aligned_cols=246 Identities=8% Similarity=-0.050 Sum_probs=166.6
Q ss_pred CCCcEEEEEeeccCCCCCCCCeE-EEEeccCcEEEEecC--CCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHV-LLLGYSNGFQVLDVE--DATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~v-l~~Gy~~G~qVWdv~--~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
+.+.|..+.|.. ..+.+ ++.+.++.++|||+. ... ....+. .+.+.|..+.+.|..
T Consensus 101 ~~~~v~~~~~s~------d~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~------------ 161 (450)
T 2vdu_B 101 IYSYIRNLRLTS------DESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRFCFSKRPNAISIAEDD------------ 161 (450)
T ss_dssp CCCCEEEEEECT------TSSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEEECSSCEEEEEECTTS------------
T ss_pred cCCceEEEEEcC------CCCEEEEEECCCCeEEEEECcCCCCc-eeeeeecccCCCCceEEEEcCCC------------
Confidence 445688888863 23555 455578889999999 543 455554 455778888887642
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEE----EEe-cCCeEEEEEecCc
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVH----VLR-FRSTVYMVRCSPR 210 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~----tL~-f~s~V~sV~~s~~ 210 (627)
.+|++.. .++.|.+|++.+++... ++. +...|.+|++++.
T Consensus 162 -~~l~~~~----------------------------------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 162 -TTVIIAD----------------------------------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKD 206 (450)
T ss_dssp -SEEEEEE----------------------------------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEEC
T ss_pred -CEEEEEe----------------------------------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCC
Confidence 4555432 12679999999887654 555 5569999999876
Q ss_pred -----EEEEEe-CCeEEEEeCCCCceeEEEE-cCCCCCCCCCCCcCcccccceeeE-cCceEEEcCCCCCcCCCCccCCC
Q 046828 211 -----IVAVGL-AAQIYCFDALTLESKFSVL-TYPVPHFGGQGTSGVNIGYGPMAV-GPRWLAYASNNPLLPNTGRLSPQ 282 (627)
Q Consensus 211 -----~LaV~~-~~~I~i~D~~t~e~~~tl~-~~p~~~~~~~g~~~~~~~~~~iAl-~~r~LAy~~~~~~v~~~gr~~~q 282 (627)
+|+++. ++.|++||+.+++.+.++. +|..+ +..+++ .+++|++
T Consensus 207 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~-------------v~~~~~sd~~~l~s---------------- 257 (450)
T 2vdu_B 207 SDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF-------------VSSICCGKDYLLLS---------------- 257 (450)
T ss_dssp TTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC-------------EEEEEECSTTEEEE----------------
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc-------------eEEEEECCCCEEEE----------------
Confidence 777775 5589999999998877743 44332 222222 1222222
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCC
Q 046828 283 SLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTD 362 (627)
Q Consensus 283 ~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~ 362 (627)
++
T Consensus 258 ------------------------------------------------------------------------------~~ 259 (450)
T 2vdu_B 258 ------------------------------------------------------------------------------AG 259 (450)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 24
Q ss_pred CCCeEEEEECCCCeEEEEeccC-------------------------CCCeEEEEECCCCCEEEEEe-CCCCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAH-------------------------TSPISALCFDRSGTLLVTAS-IHGNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH-------------------------~~~Is~laFspdG~lLaTaS-~dGt~I~Vwdi~ 416 (627)
.||.|+|||+.+++.+..+..| ...|..|+|+|+|++|++++ .+|+ |+||++.
T Consensus 260 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~-i~iw~~~ 338 (450)
T 2vdu_B 260 GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC-IIILEMS 338 (450)
T ss_dssp SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE-EEEEEEC
T ss_pred CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe-EEEEEec
Confidence 6789999999999988888632 45799999999999999999 7776 8999982
Q ss_pred CCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC------CCeEEEEEcCCCCCee
Q 046828 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS------RGTCHIFVLTPFGGET 485 (627)
Q Consensus 417 p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~------dgTvhIw~i~~~gg~~ 485 (627)
... .+. ...+..+ .++ ..|.+++|+|++.++++.+. +..|.||.++..++.-
T Consensus 339 ~~~----~~~----------l~~~~~~-~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 339 EKQ----KGD----------LALKQII-TFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSF 396 (450)
T ss_dssp SSS----TTC----------EEEEEEE-ECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred cCC----CCc----------eeeccEe-ccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence 010 111 1133333 444 46999999997666655554 4568999998766554
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-16 Score=164.94 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCe-EEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPI-SALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~I-s~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
++.||+|+|||+.+++.+.+|++|...+ .+++|+|||++||+||.||+ |||||+
T Consensus 301 gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 301 ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 4578999999999999999999998764 56999999999999999998 899995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-15 Score=159.58 Aligned_cols=246 Identities=17% Similarity=0.130 Sum_probs=165.6
Q ss_pred CeEEEEecc------CcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCccee
Q 046828 81 KHVLLLGYS------NGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVH 154 (627)
Q Consensus 81 ~~vl~~Gy~------~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~ 154 (627)
.+++.++.+ +.+++||++. +++ ..+..|.+.|..+.+.|.- ..|+.+..|.
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~-~~l~~~~~~v~~~~~Spdg-------------~~la~~s~~~-------- 200 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQ-FVVHRSPQPLMSPAWSPDG-------------SKLAYVTFES-------- 200 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSC-EEEEEESSCEEEEEECTTS-------------SEEEEEECTT--------
T ss_pred CEEEEEEecCCCCccceEEEEcCCC-CCC-EEEeCCCCcceeeEEcCCC-------------CEEEEEEecC--------
Confidence 566666654 6799999974 444 4555678888888887643 5566654211
Q ss_pred eeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEE-e-C--CeEEEEeCCCC
Q 046828 155 VHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVG-L-A--AQIYCFDALTL 228 (627)
Q Consensus 155 ~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~-~-~--~~I~i~D~~t~ 228 (627)
...+|++||+++++......+...+.+++|++ +.|+.+ . + .+|++||+.++
T Consensus 201 -----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 201 -----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp -----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred -----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence 01579999999999876555778999999997 667644 3 2 35999999998
Q ss_pred ceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhh
Q 046828 229 ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAV 306 (627)
Q Consensus 229 e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~ 306 (627)
+. ..+..+... ...++++| ++|++.+..
T Consensus 258 ~~-~~l~~~~~~-------------~~~~~~spdg~~l~~~s~~------------------------------------ 287 (415)
T 2hqs_A 258 QI-RQVTDGRSN-------------NTEPTWFPDSQNLAFTSDQ------------------------------------ 287 (415)
T ss_dssp CE-EECCCCSSC-------------EEEEEECTTSSEEEEEECT------------------------------------
T ss_pred CE-EeCcCCCCc-------------ccceEECCCCCEEEEEECC------------------------------------
Confidence 75 344443321 22233332 444443310
Q ss_pred hhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCC
Q 046828 307 ESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTS 386 (627)
Q Consensus 307 ~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~ 386 (627)
.....|.+||+.+++. ..+..|..
T Consensus 288 -------------------------------------------------------~g~~~i~~~d~~~~~~-~~l~~~~~ 311 (415)
T 2hqs_A 288 -------------------------------------------------------AGRPQVYKVNINGGAP-QRITWEGS 311 (415)
T ss_dssp -------------------------------------------------------TSSCEEEEEETTSSCC-EECCCSSS
T ss_pred -------------------------------------------------------CCCcEEEEEECCCCCE-EEEecCCC
Confidence 0122678889988763 45667778
Q ss_pred CeEEEEECCCCCEEEEEeCC-C-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEE
Q 046828 387 PISALCFDRSGTLLVTASIH-G-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~d-G-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~L 464 (627)
.+..++|+|||++|++++.+ | ..|.+||+. ++ .+..+.. +. .+.+++|+|||++|
T Consensus 312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~-------~~-------------~~~~l~~-~~--~~~~~~~spdg~~l 368 (415)
T 2hqs_A 312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-------TG-------------GVQVLSS-TF--LDETPSLAPNGTMV 368 (415)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETT-------TC-------------CEEECCC-SS--SCEEEEECTTSSEE
T ss_pred cccCeEECCCCCEEEEEECcCCceEEEEEECC-------CC-------------CEEEecC-CC--CcCCeEEcCCCCEE
Confidence 89999999999999998865 2 348999985 23 2233432 22 58999999999999
Q ss_pred EEEeCCC---eEEEEEcCCCCCeeecccccccccCCCCCCC
Q 046828 465 AIVSSRG---TCHIFVLTPFGGETVLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 465 as~S~dg---TvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~ 502 (627)
+.++.++ ++.+|++. .+....+..|...+..+.+.|.
T Consensus 369 ~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred EEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence 9998877 78888886 3344566677666665555554
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=165.81 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=48.9
Q ss_pred CCcEEEEEECCCCceEEE-----Ee-cCCeEEEEEecC----------cEEEEEeC-CeEEEEeCCCCceeEEEEcCCCC
Q 046828 178 SPTAVRFYSLRSHNYVHV-----LR-FRSTVYMVRCSP----------RIVAVGLA-AQIYCFDALTLESKFSVLTYPVP 240 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~t-----L~-f~s~V~sV~~s~----------~~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~ 240 (627)
.+++|+|||+++++.... ++ |...|.+|+|++ ++||++.+ ++|+|||+.+.+.+..+..|..+
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 358899999999976543 23 456999999974 68888865 57999999998888777776554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-14 Score=154.54 Aligned_cols=228 Identities=12% Similarity=0.143 Sum_probs=153.0
Q ss_pred CeEEEEecc-CcEEEEecCCCCCceEE-----eeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCccee
Q 046828 81 KHVLLLGYS-NGFQVLDVEDATNVSEL-----VSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVH 154 (627)
Q Consensus 81 ~~vl~~Gy~-~G~qVWdv~~~~~~~el-----ls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~ 154 (627)
..+++.+.+ +.+++||++.... ... +..|.+.|..+.+.|.. .+++ .+.
T Consensus 134 ~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~-s~~---------- 188 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDINSGQT-VRLSPPEKYKKKLGFVETISIPEHN-------------ELWV-SQM---------- 188 (433)
T ss_dssp SEEEEEBTTSSSEEEEETTTCCE-EEECCCHHHHTTCCEEEEEEEGGGT-------------EEEE-EEG----------
T ss_pred CeEEEEeCCCCeEEEEECCCCeE-eeecCcccccccCCceeEEEEcCCC-------------EEEE-EEC----------
Confidence 556666654 4599999997553 332 22456777777774431 3433 220
Q ss_pred eeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEE-EEE-eCCeEEEEeCCCCc
Q 046828 155 VHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIV-AVG-LAAQIYCFDALTLE 229 (627)
Q Consensus 155 ~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~L-aV~-~~~~I~i~D~~t~e 229 (627)
.+++|++||+++++.+.++.. ...+.++++++ +.| +++ .++.|++||+.+++
T Consensus 189 -----------------------~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 189 -----------------------QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp -----------------------GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred -----------------------CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 126799999999999999984 45899999987 455 445 35789999999988
Q ss_pred eeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 230 SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 230 ~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.+..+..+.. ...++++| ++|+++...
T Consensus 246 ~~~~~~~~~~--------------~~~~~~~~~g~~l~~~~~~------------------------------------- 274 (433)
T 3bws_A 246 EIRKTDKIGL--------------PRGLLLSKDGKELYIAQFS------------------------------------- 274 (433)
T ss_dssp EEEECCCCSE--------------EEEEEECTTSSEEEEEEEE-------------------------------------
T ss_pred EEEEecCCCC--------------ceEEEEcCCCCEEEEEECC-------------------------------------
Confidence 7665533211 11233322 233332200
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP 387 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~ 387 (627)
.+. ....+|.|++||+.+++.+..+ .|...
T Consensus 275 -------------------------------------------~~~------~~~~dg~i~~~d~~~~~~~~~~-~~~~~ 304 (433)
T 3bws_A 275 -------------------------------------------ASN------QESGGGRLGIYSMDKEKLIDTI-GPPGN 304 (433)
T ss_dssp -------------------------------------------SCT------TCSCCEEEEEEETTTTEEEEEE-EEEEC
T ss_pred -------------------------------------------CCc------cccCCCeEEEEECCCCcEEeec-cCCCC
Confidence 000 0125899999999999877665 45668
Q ss_pred eEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 388 ISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 388 Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
+..++|+|+|+ ++++++.+|+ |++||+. ++ ..+..+. ....+.+++|+||+++|++
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~-------~~------------~~~~~~~---~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCCSK-IEVYDLK-------EK------------KVQKSIP---VFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp EEEEEECSSTTEEEEEETTTTE-EEEEETT-------TT------------EEEEEEE---CSSSEEEEEECTTSSEEEE
T ss_pred cceEEECCCCCEEEEEecCCCE-EEEEECC-------CC------------cEEEEec---CCCCCCeEEEcCCCCEEEE
Confidence 99999999997 5566788886 8999985 22 1333332 1235899999999999999
Q ss_pred EeC---------------CCeEEEEEcCC
Q 046828 467 VSS---------------RGTCHIFVLTP 480 (627)
Q Consensus 467 ~S~---------------dgTvhIw~i~~ 480 (627)
++. ||+|++|++..
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EecCCCccccccccccccceEEEEEECCC
Confidence 887 57999999865
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=167.17 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=75.3
Q ss_pred CCCCeEEEEECCCCe---EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 362 DIAGMVVVKDIVSRS---VISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~---~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
+.|+.|++||+..++ ....++ +|...|.+++|+ |+.||+++ +|+ |++||+. .+
T Consensus 199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~-------~~------------ 255 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLK-------NY------------ 255 (588)
T ss_dssp ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETT-------TT------------
T ss_pred eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECC-------CC------------
Confidence 468999999998876 345674 888999999999 79999998 466 8999985 22
Q ss_pred eEEEEEeecCCcCcEEEEEE--ccCCCEEEEEeCCCeEEEEEcC
Q 046828 438 VHLYKLHRGMTSAVIQDICF--SHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaF--SpDg~~Las~S~dgTvhIw~i~ 479 (627)
++..+..||. +.|++|+| |||++.|++++.+|+ +||..+
T Consensus 256 -~~~~~~~gh~-~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 256 -SISSLKTGSL-ENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -EEEEEECSCC-SCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred -eEEEEEcCCC-ceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 3434444754 56999999 999999999999999 999986
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-14 Score=159.34 Aligned_cols=237 Identities=11% Similarity=0.107 Sum_probs=154.6
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCc-----eEEEEEeeCCCCCCCCCCcCCCC
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDP-----VTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~-----V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
.+.|.-+.|-- .+..+.+++.++.++|||.+. ..+.+. |+.+ |.++++.|..
T Consensus 85 ~~~V~~vawSP------dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG------------- 141 (588)
T 2j04_A 85 VCYPRVCKPSP------IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIE------------- 141 (588)
T ss_dssp SCCEEEEEECS------SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSS-------------
T ss_pred CCcEEEEEECC------CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCC-------------
Confidence 56688888852 347899999999999999543 455566 7765 8888887643
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc-------eEEEEec-----CCeEEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN-------YVHVLRF-----RSTVYM 204 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~-------~V~tL~f-----~s~V~s 204 (627)
.+||+.+ .+++|+|||++++. .+++++. .++|++
T Consensus 142 ~~LAsgs----------------------------------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s 187 (588)
T 2j04_A 142 SSIVVGN----------------------------------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH 187 (588)
T ss_dssp SCEEEEE----------------------------------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred CEEEEEc----------------------------------CCCEEEEEECCCCccccccceeeeeeecccccccccEEE
Confidence 5666543 13789999999986 3778752 349999
Q ss_pred EEecCcEEEEE-eCCeEEEEeCCCCce---eEEEE-cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCcc
Q 046828 205 VRCSPRIVAVG-LAAQIYCFDALTLES---KFSVL-TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRL 279 (627)
Q Consensus 205 V~~s~~~LaV~-~~~~I~i~D~~t~e~---~~tl~-~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~ 279 (627)
|+++++-|+++ .+..|++||+.+.+. .+++. .|... +..++++...||.
T Consensus 188 VawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~-------------V~svaFsg~~LAS------------- 241 (588)
T 2j04_A 188 IVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK-------------ITDLKIVDYKVVL------------- 241 (588)
T ss_dssp EEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC-------------CCCEEEETTEEEE-------------
T ss_pred EEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCc-------------EEEEEEECCEEEE-------------
Confidence 99998546555 456899999988773 24553 33211 2223331122221
Q ss_pred CCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCccccccc
Q 046828 280 SPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSS 359 (627)
Q Consensus 280 ~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~ 359 (627)
T Consensus 242 -------------------------------------------------------------------------------- 241 (588)
T 2j04_A 242 -------------------------------------------------------------------------------- 241 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE--CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc-----cC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF--DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT-----YD 432 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF--spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~-----~~ 432 (627)
+ .+|.|++||+.+++......+|...|..++| +|||+.|++|+++|+ +||.... ....+.+.-.+. .-
T Consensus 242 -a-~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~-~~~spd~~l~a~~d~~v~l 316 (588)
T 2j04_A 242 -T-CPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDE-LHVTADNIIAPYLEKKFKK 316 (588)
T ss_dssp -E-CSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSS-EEEECCCSSHHHHHHHHHH
T ss_pred -E-eCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeecc-EEECCCceEEEEcCCEEEE
Confidence 1 2589999999988774444489999999999 999999999999997 8998631 000001110000 00
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
|......+. ...+ ...|++|+|||||+.||+++.
T Consensus 317 W~~~g~~l~-~~~~--~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 317 WSTIWNEFN-NYET--TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTTTSSS-SSCC--EEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCCcee-eecc--ceEEEEEEECCCCCEEEEEEe
Confidence 111000111 1122 235999999999999999854
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-13 Score=135.25 Aligned_cols=93 Identities=8% Similarity=0.027 Sum_probs=72.2
Q ss_pred eEEEEECCCCeEE-EEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 366 MVVVKDIVSRSVI-SQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 366 ~V~IwD~~s~~~l-~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.|.+||+.+++.. ..+..|...+..++|+|||++|+++ +++ |.+||+. ++ ..+..+.
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~-------~~------------~~~~~~~ 277 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLE-------KN------------ASIKRVP 277 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETT-------TT------------EEEEEEE
T ss_pred ceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECC-------CC------------cCcceec
Confidence 5799999998764 3345677788999999999999998 465 8999985 23 1333333
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.+ ..+.+++|+||+++|++++.+++|++|++.....
T Consensus 278 ~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 278 LP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp CS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 22 3478999999999999999999999999976543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-13 Score=145.74 Aligned_cols=172 Identities=18% Similarity=0.118 Sum_probs=120.1
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEeCC----eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGLAA----QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~~~----~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
.+|++||+..++ ++.+. +...|.++++++ +.|+.+..+ .|++||+.+++.. .+..++..
T Consensus 159 ~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~------------ 224 (415)
T 2hqs_A 159 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRH------------ 224 (415)
T ss_dssp EEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSC------------
T ss_pred ceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCc------------
Confidence 689999998554 45554 667999999998 677766543 8999999998864 45544321
Q ss_pred ccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 253 GYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 253 ~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
...++++| ++|||...
T Consensus 225 -~~~~~~spdg~~la~~~~------------------------------------------------------------- 242 (415)
T 2hqs_A 225 -NGAPAFSPDGSKLAFALS------------------------------------------------------------- 242 (415)
T ss_dssp -EEEEEECTTSSEEEEEEC-------------------------------------------------------------
T ss_pred -ccCEEEcCCCCEEEEEEe-------------------------------------------------------------
Confidence 22344443 44554321
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CC-
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GN- 408 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt- 408 (627)
.+.+..|.+||+.+++. ..+..|...+.+++|+|||+.|++++.+ |+
T Consensus 243 ------------------------------~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 243 ------------------------------KTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp ------------------------------TTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred ------------------------------cCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 11235699999998765 6788899999999999999999988864 43
Q ss_pred EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC---CeEEEEEcCC
Q 046828 409 NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR---GTCHIFVLTP 480 (627)
Q Consensus 409 ~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d---gTvhIw~i~~ 480 (627)
.|.+||+. .+ .+.++. .+ ...+.+++|||||++|+.++.+ .+|++|++..
T Consensus 292 ~i~~~d~~-------~~-------------~~~~l~-~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 292 QVYKVNIN-------GG-------------APQRIT-WE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp EEEEEETT-------SS-------------CCEECC-CS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred EEEEEECC-------CC-------------CEEEEe-cC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 35666764 22 112221 11 2358899999999999998865 5899999874
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-13 Score=132.60 Aligned_cols=217 Identities=11% Similarity=0.034 Sum_probs=142.1
Q ss_pred eccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCC
Q 046828 87 GYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDG 166 (627)
Q Consensus 87 Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g 166 (627)
+.++.+.+||+.... .+.+..+.+.|..+.+.|.. .+|++..
T Consensus 19 ~~~~~i~~~d~~~~~--~~~~~~~~~~v~~~~~spdg-------------~~l~~~~----------------------- 60 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRK--MRVVWQTPELFEAPNWSPDG-------------KYLLLNS----------------------- 60 (297)
T ss_dssp CCCEEEEEEETTTTE--EEEEEEESSCCEEEEECTTS-------------SEEEEEE-----------------------
T ss_pred CcceeEEEEeCCCCc--eeeeccCCcceEeeEECCCC-------------CEEEEEc-----------------------
Confidence 456789999998754 44455678888888887643 4555421
Q ss_pred CCCCCCCCCCcCCcEEEEEECCC-CceEEEEecC--CeEEEEEecC--cEEEEEe-----CCeEEEEeCCCCceeEEEEc
Q 046828 167 YDEPQPGNVAMSPTAVRFYSLRS-HNYVHVLRFR--STVYMVRCSP--RIVAVGL-----AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 167 ~~~~~~~~~~~~~~tV~lwdl~t-~~~V~tL~f~--s~V~sV~~s~--~~LaV~~-----~~~I~i~D~~t~e~~~tl~~ 236 (627)
+..|.+||+.+ ++....+... ..|.++++++ +.|+++. ..+|++||+.+.+. ..+..
T Consensus 61 ------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 127 (297)
T 2ojh_A 61 ------------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK 127 (297)
T ss_dssp ------------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS
T ss_pred ------------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec
Confidence 15699999999 8887666544 5788899987 6777776 23677778776652 22221
Q ss_pred CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcce
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGL 316 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl 316 (627)
+.. . ..+++.++... +
T Consensus 128 ~~~--------------~-------~~~~~spdg~~---------------------------------------l---- 143 (297)
T 2ojh_A 128 NLP--------------S-------YWHGWSPDGKS---------------------------------------F---- 143 (297)
T ss_dssp SSS--------------E-------EEEEECTTSSE---------------------------------------E----
T ss_pred CCC--------------c-------cceEECCCCCE---------------------------------------E----
Confidence 110 1 12333322100 0
Q ss_pred eecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC--CCCeEEEEeccCCCCeEEEEEC
Q 046828 317 INLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI--VSRSVISQFRAHTSPISALCFD 394 (627)
Q Consensus 317 ~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~--~s~~~l~~~~aH~~~Is~laFs 394 (627)
.+ .+..++.++||++ .++ ....+..|...+.+++|+
T Consensus 144 ---------~~--------------------------------~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s 181 (297)
T 2ojh_A 144 ---------TY--------------------------------CGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYS 181 (297)
T ss_dssp ---------EE--------------------------------EEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEEC
T ss_pred ---------EE--------------------------------EECCCCceEEEEEECCCC-cceEcccCCCccccceEC
Confidence 00 0124566788874 443 456777888899999999
Q ss_pred CCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC---
Q 046828 395 RSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR--- 470 (627)
Q Consensus 395 pdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d--- 470 (627)
|+|++|+.++. ++. ++||++.... + .+..+. .+. ..+.+++|+||+++|++++.+
T Consensus 182 ~dg~~l~~~~~~~~~-~~i~~~~~~~-----~-------------~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 182 PDGRWIYFNSSRTGQ-MQIWRVRVDG-----S-------------SVERIT-DSA-YGDWFPHPSPSGDKVVFVSYDADV 240 (297)
T ss_dssp TTSSEEEEEECTTSS-CEEEEEETTS-----S-------------CEEECC-CCS-EEEEEEEECTTSSEEEEEEEETTC
T ss_pred CCCCEEEEEecCCCC-ccEEEECCCC-----C-------------CcEEEe-cCC-cccCCeEECCCCCEEEEEEcCCCC
Confidence 99998887764 776 7999885221 1 233332 222 358999999999999998876
Q ss_pred --------CeEEEEEcCCC
Q 046828 471 --------GTCHIFVLTPF 481 (627)
Q Consensus 471 --------gTvhIw~i~~~ 481 (627)
+.+++|++...
T Consensus 241 ~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp CSCCSSEEEEEEEEETTSC
T ss_pred CcccccCceEEEEEecCCC
Confidence 56888988653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-11 Score=124.72 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=121.6
Q ss_pred cEEEEEECCCCceEEEEecCC----------eEEEEEecC--cEEEEEe---CCeEEEEeCCCCceeEEEEcCCCCCCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS----------TVYMVRCSP--RIVAVGL---AAQIYCFDALTLESKFSVLTYPVPHFGG 244 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s----------~V~sV~~s~--~~LaV~~---~~~I~i~D~~t~e~~~tl~~~p~~~~~~ 244 (627)
+.|.+||+++++.+.++..+. .+.++.+++ +.|+++. +++|++||+.+++.+..+..+...
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---- 186 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM---- 186 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT----
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc----
Confidence 679999999999999998753 268899986 5566554 457999999999887776422110
Q ss_pred CCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcce
Q 046828 245 QGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY 324 (627)
Q Consensus 245 ~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~ 324 (627)
+.-+++.++...
T Consensus 187 ----------------~~~~~~s~dg~~---------------------------------------------------- 198 (353)
T 3vgz_A 187 ----------------STGLALDSEGKR---------------------------------------------------- 198 (353)
T ss_dssp ----------------CCCCEEETTTTE----------------------------------------------------
T ss_pred ----------------cceEEECCCCCE----------------------------------------------------
Confidence 012222221100
Q ss_pred eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc----CCCCeEEEEECCCCCEE
Q 046828 325 KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA----HTSPISALCFDRSGTLL 400 (627)
Q Consensus 325 ~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a----H~~~Is~laFspdG~lL 400 (627)
+ | .+..++.|.+||+.+++.+..+.. +...+..++|+|+|++|
T Consensus 199 --l--~-----------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 199 --L--Y-----------------------------TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp --E--E-----------------------------EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred --E--E-----------------------------EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence 0 0 012467899999999998888775 55568889999999988
Q ss_pred EEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 401 VTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 401 aTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
+.++.+...|.+||+. ++. .+..+.-+. -..++|+||+++|++++ .+++|++|++.
T Consensus 246 ~~~~~~~~~v~~~d~~-------~~~------------~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTR-------NGN------------ILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEESSSSEEEEEETT-------TCC------------EEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCEEEEEECC-------CCc------------EEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 8877764458999985 232 333343232 25699999999877766 68999999987
Q ss_pred CC
Q 046828 480 PF 481 (627)
Q Consensus 480 ~~ 481 (627)
..
T Consensus 303 ~~ 304 (353)
T 3vgz_A 303 SY 304 (353)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-12 Score=126.66 Aligned_cols=104 Identities=7% Similarity=0.183 Sum_probs=68.7
Q ss_pred CCCeEEEEECCC-CeEEE----Eecc-CCCCeEEEEECCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 363 IAGMVVVKDIVS-RSVIS----QFRA-HTSPISALCFDRSGTLLVTAS-IHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 363 ~dG~V~IwD~~s-~~~l~----~~~a-H~~~Is~laFspdG~lLaTaS-~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
.++.|.+||+.+ ++... .+.. ....+..++|+|+|++|+.++ .+++ |++|++... +|.
T Consensus 149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~-----~g~--------- 213 (343)
T 1ri6_A 149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDP-----HGN--------- 213 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCT-----TSC---------
T ss_pred CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCC-----CCc---------
Confidence 467899999987 54322 2333 345788999999999776665 5665 899998521 121
Q ss_pred ceeEEEEEe---ecCC-cCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCC
Q 046828 436 SHVHLYKLH---RGMT-SAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFG 482 (627)
Q Consensus 436 ~~~~l~~l~---rG~t-~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~g 482 (627)
...+..+. .++. ...+.+++|+||+++|+++. .+++|++|++...+
T Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~ 264 (343)
T 1ri6_A 214 -IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 264 (343)
T ss_dssp -CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred -EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC
Confidence 01122221 1211 12478999999999988655 78999999997533
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-12 Score=129.42 Aligned_cols=103 Identities=9% Similarity=0.108 Sum_probs=68.8
Q ss_pred CCCeEEEEECCC--CeE--EEEec---cC---CCCeEEEEECCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 363 IAGMVVVKDIVS--RSV--ISQFR---AH---TSPISALCFDRSGTLLVTAS-IHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 363 ~dG~V~IwD~~s--~~~--l~~~~---aH---~~~Is~laFspdG~lLaTaS-~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
.++.|.+||+.. ++. +..+. .+ ...+..++|+|+|++|+.+. .+++ |++||+.+.. +.
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~-----~~----- 266 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDG-----SV----- 266 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTS-----CC-----
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCC-----Cc-----
Confidence 567899999853 322 22332 11 23567899999999887554 5665 8999986221 11
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCCe
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGGE 484 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg~ 484 (627)
...+..+..+ ..+.+++|+||+++|++++ .+++++||+++...+.
T Consensus 267 -----~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 267 -----LSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp -----EEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred -----eEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 1233333222 2378999999999999988 6899999998876553
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=144.52 Aligned_cols=282 Identities=10% Similarity=0.104 Sum_probs=165.7
Q ss_pred CCCeEEEEeccCcEEEEec--CCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee
Q 046828 79 SFKHVLLLGYSNGFQVLDV--EDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH 156 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv--~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~ 156 (627)
+++.+++.+.++.+.+||+ .+...+.+ +.. ...++.+.+.|-+. . ...+|++..
T Consensus 189 dg~~l~v~~~d~~V~v~D~~~~t~~~~~~-i~~-g~~p~~va~sp~~~----~-----dg~~l~v~~------------- 244 (543)
T 1nir_A 189 SGRYLLVIGRDARIDMIDLWAKEPTKVAE-IKI-GIEARSVESSKFKG----Y-----EDRYTIAGA------------- 244 (543)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCEEEEE-EEC-CSEEEEEEECCSTT----C-----TTTEEEEEE-------------
T ss_pred CCCEEEEECCCCeEEEEECcCCCCcEEEE-Eec-CCCcceEEeCCCcC----C-----CCCEEEEEE-------------
Confidence 4578999999999999999 55332222 222 22346666655110 0 114555432
Q ss_pred ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-----------C-eEEEEEecC--cEEEEEe--CCeE
Q 046828 157 VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-----------S-TVYMVRCSP--RIVAVGL--AAQI 220 (627)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-----------s-~V~sV~~s~--~~LaV~~--~~~I 220 (627)
+.+++|.+||..++++++++..+ . .+.+|.+++ +.++++. +++|
T Consensus 245 --------------------~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i 304 (543)
T 1nir_A 245 --------------------YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 304 (543)
T ss_dssp --------------------EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred --------------------ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence 11367999999999999998742 2 688999986 4444443 4589
Q ss_pred EEEeCCCCceeE--EEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcC-CCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 221 YCFDALTLESKF--SVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYAS-NNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 221 ~i~D~~t~e~~~--tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~-~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
.+||..+++.+. ++..... ...++++| |+|..+. .+..+..
T Consensus 305 ~vvd~~~~~~l~~~~i~~~~~--------------~~~~~~spdg~~l~va~~~~~~v~v-------------------- 350 (543)
T 1nir_A 305 LLVNYKDIDNLTVTSIGAAPF--------------LHDGGWDSSHRYFMTAANNSNKVAV-------------------- 350 (543)
T ss_dssp EEEECTTSSSCEEEEEECCSS--------------CCCEEECTTSCEEEEEEGGGTEEEE--------------------
T ss_pred EEEEecCCCcceeEEeccCcC--------------ccCceECCCCCEEEEEecCCCeEEE--------------------
Confidence 999999887654 3332111 12255654 5543332 2212111
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCc-cCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPV-SSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~-s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+..+.. ++...+ .+|..- ..+.+..+ .++ .|.+- .+....+++|.|||+.+
T Consensus 351 --------~D~~tg-~l~~~i-~~g~~p------------h~g~g~~~~~p~----~g~~~--~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 351 --------IDSKDR-RLSALV-DVGKTP------------HPGRGANFVHPK----YGPVW--STSHLGDGSISLIGTDP 402 (543)
T ss_dssp --------EETTTT-EEEEEE-ECSSSB------------CCTTCEEEEETT----TEEEE--EEEBSSSSEEEEEECCT
T ss_pred --------EECCCC-eEEEee-ccCCCC------------CCCCCcccCCCC----CccEE--EeccCCCceEEEEEeCC
Confidence 111111 111111 111000 00000000 000 01110 00112578999999998
Q ss_pred -------CeEEEEeccCCCCeEEEEECCCCCEEEEEeC-------CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 375 -------RSVISQFRAHTSPISALCFDRSGTLLVTASI-------HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 375 -------~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.+++.++..|...+..|+|+|+|+.|++++. +++ |.|||+. ++. .+
T Consensus 403 ~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~v~d~~-------~~~------------~~ 462 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLK-------NLD------------AK 462 (543)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EEEEETT-------CTT------------SC
T ss_pred CCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EEEEECC-------CCC------------CC
Confidence 8999999999999999999999999999872 445 8999996 221 12
Q ss_pred EEEe-----ec--CCcCcEEEEEEccCCCEEEEEe-----CCCeEEEEEcCCCCCeee
Q 046828 441 YKLH-----RG--MTSAVIQDICFSHYSQWIAIVS-----SRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 441 ~~l~-----rG--~t~a~I~sIaFSpDg~~Las~S-----~dgTvhIw~i~~~gg~~~ 486 (627)
++.. .| .....+..++|+|||++|.++. .+++|.|||..+......
T Consensus 463 ~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 463 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 2221 01 1123589999999999999873 479999999887654433
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-12 Score=142.67 Aligned_cols=234 Identities=14% Similarity=0.126 Sum_probs=146.0
Q ss_pred CeEEEEec-cCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLLGY-SNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~Gy-~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.++++.++ ++.+.|||..+... ...+..+.. +..+.+.|.- .+|++..
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~-~~~i~~g~~-~~~v~~spdg-------------~~l~v~~---------------- 197 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKI-VKVIDTGYA-VHISRMSASG-------------RYLLVIG---------------- 197 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCE-EEEEECSTT-EEEEEECTTS-------------CEEEEEE----------------
T ss_pred CEEEEEEcCCCeEEEEECCCceE-EEEEecCcc-cceEEECCCC-------------CEEEEEC----------------
Confidence 35555555 56699999987553 333332222 5555555432 5565432
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEEC--CCCceEEEEecCCeEEEEEecC------cEEEEEe--CCeEEEEeCCCCc
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSL--RSHNYVHVLRFRSTVYMVRCSP------RIVAVGL--AAQIYCFDALTLE 229 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl--~t~~~V~tL~f~s~V~sV~~s~------~~LaV~~--~~~I~i~D~~t~e 229 (627)
.+++|++||+ ++++.+.++.....++.|+|++ ++|+|+. +++|.+||..|++
T Consensus 198 ------------------~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 198 ------------------RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp ------------------TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred ------------------CCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 1267999999 8999999999888899999986 5777764 6799999999999
Q ss_pred eeEEEEcCCCCCCCCCCCcCcccccceeeEcCc--eEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 230 SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPR--WLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 230 ~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r--~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.+.++.+...... ...+..+++ -+++.++.+. +
T Consensus 260 ~~~~i~~~g~~~~-----------~~~~~~~~~v~~i~~s~~~~~---------------------------~------- 294 (543)
T 1nir_A 260 PKQIVSTRGMTVD-----------TQTYHPEPRVAAIIASHEHPE---------------------------F------- 294 (543)
T ss_dssp EEEEEECCEECSS-----------SCCEESCCCEEEEEECSSSSE---------------------------E-------
T ss_pred cceeecccCcccC-----------ccccccCCceEEEEECCCCCE---------------------------E-------
Confidence 9988865322100 000000111 1222221100 0
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEE--EeccCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVIS--QFRAHT 385 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~--~~~aH~ 385 (627)
+ .....+|.|.+||+.+.+.+. .+. |.
T Consensus 295 -------------------~-------------------------------vs~~~~g~i~vvd~~~~~~l~~~~i~-~~ 323 (543)
T 1nir_A 295 -------------------I-------------------------------VNVKETGKVLLVNYKDIDNLTVTSIG-AA 323 (543)
T ss_dssp -------------------E-------------------------------EEETTTTEEEEEECTTSSSCEEEEEE-CC
T ss_pred -------------------E-------------------------------EEECCCCeEEEEEecCCCcceeEEec-cC
Confidence 0 012467899999998865433 443 56
Q ss_pred CCeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC--cEEEEEEccC-C
Q 046828 386 SPISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA--VIQDICFSHY-S 461 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a--~I~sIaFSpD-g 461 (627)
..+..++|+|||++|++++. +++ |.|||+. +| ..+..+.-|..+. ....+ ++|| +
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~-------tg------------~l~~~i~~g~~ph~g~g~~~-~~p~~g 382 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNK-VAVIDSK-------DR------------RLSALVDVGKTPHPGRGANF-VHPKYG 382 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTE-EEEEETT-------TT------------EEEEEEECSSSBCCTTCEEE-EETTTE
T ss_pred cCccCceECCCCCEEEEEecCCCe-EEEEECC-------CC------------eEEEeeccCCCCCCCCCccc-CCCCCc
Confidence 66888999999998776654 555 8999986 33 2344443332221 22233 5777 5
Q ss_pred CEEEEEe-CCCeEEEEEcCC
Q 046828 462 QWIAIVS-SRGTCHIFVLTP 480 (627)
Q Consensus 462 ~~Las~S-~dgTvhIw~i~~ 480 (627)
+.++++. .+++|.||++.+
T Consensus 383 ~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 383 PVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEEEEEBSSSSEEEEEECCT
T ss_pred cEEEeccCCCceEEEEEeCC
Confidence 5566655 589999999987
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-12 Score=127.61 Aligned_cols=246 Identities=8% Similarity=0.139 Sum_probs=150.5
Q ss_pred EEEeeccCCCCCCCCeEEEEec-cCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEcc
Q 046828 67 WSSFDKLELSPSSFKHVLLLGY-SNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACD 145 (627)
Q Consensus 67 wa~Fd~l~~~~~~~~~vl~~Gy-~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d 145 (627)
++.|+. ..+.+++.+. ++.+.+||++........+..+.++...+.+.|. ..+|+ +. +
T Consensus 44 ~~~~s~------dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d-------------g~~l~-~~-~ 102 (331)
T 3u4y_A 44 DTAITS------DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPD-------------DQFAV-TV-T 102 (331)
T ss_dssp EEEECS------SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTT-------------SSEEE-EC-C
T ss_pred eEEEcC------CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCC-------------CCEEE-Ee-c
Confidence 666653 2356777777 6679999998754214444444454332454432 25555 32 1
Q ss_pred CccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEE-EEEeC-Ce-E
Q 046828 146 EAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIV-AVGLA-AQ-I 220 (627)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~L-aV~~~-~~-I 220 (627)
.. + .+..|.+||+++++.+.++.......++++++ +.| ++... ++ |
T Consensus 103 ~~---~--------------------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 103 GL---N--------------------------HPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp CS---S--------------------------SSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred CC---C--------------------------CcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceE
Confidence 10 0 01379999999999999998887789999998 344 44444 57 9
Q ss_pred EEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcc
Q 046828 221 YCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNL 300 (627)
Q Consensus 221 ~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~ 300 (627)
++||+.....+........+ ....++.+++.++...
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~----------------~~~~~~~~~~spdg~~---------------------------- 189 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFIS----------------GGTRPFNITFTPDGNF---------------------------- 189 (331)
T ss_dssp EEEEECTTCCEEEEEEEEEC----------------SSSSEEEEEECTTSSE----------------------------
T ss_pred EEEEECCCCcEeecCCcccc----------------CCCCccceEECCCCCE----------------------------
Confidence 99998764433222110000 0001234454432100
Q ss_pred cchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE---
Q 046828 301 MARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV--- 377 (627)
Q Consensus 301 v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~--- 377 (627)
++ + ....++.|.+||+.+++.
T Consensus 190 ---------------l~---------v--------------------------------~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 190 ---------------AF---------V--------------------------------ANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp ---------------EE---------E--------------------------------EETTTTEEEEEECSSTTSCEE
T ss_pred ---------------EE---------E--------------------------------EeCCCCeEEEEECCCCcccce
Confidence 00 0 123568899999999887
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC--CcC---cE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM--TSA---VI 452 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~--t~a---~I 452 (627)
+..+..+ ..+..++|+|||++|+.++.....|.+||+. ++. ...+..+..+. ... ..
T Consensus 214 ~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~-------~~~----------~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 214 LNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQL-------SGT----------LSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp EEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETT-------TTE----------EEEEEEEECCCCCCCGGGTTC
T ss_pred eeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECC-------CCc----------eeeecccccccccCCCCcccc
Confidence 7777755 5568899999999887776543448999985 231 01233333321 111 13
Q ss_pred EEEEEccCCCEEEEEeC-CCeEEEEEcCC
Q 046828 453 QDICFSHYSQWIAIVSS-RGTCHIFVLTP 480 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~-dgTvhIw~i~~ 480 (627)
..++|+||+++|++++. +++|.||++..
T Consensus 276 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 276 NQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred cceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 56899999999977665 56999999975
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-12 Score=127.84 Aligned_cols=228 Identities=12% Similarity=0.059 Sum_probs=140.1
Q ss_pred CeEEEE-eccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLL-GYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~-Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
..+++. ..++.+.+||+++.. +...+.....++ .+.+.|.- ..|+++..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~-~~~~s~dg-------------~~l~~~~~--------------- 59 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLE-ILNQITLGYDFV-DTAITSDC-------------SNVVVTSD--------------- 59 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCC-EEEEEECCCCEE-EEEECSSS-------------CEEEEEES---------------
T ss_pred CEEEEEecCCCeEEEEeCcccc-eeeeEEccCCcc-eEEEcCCC-------------CEEEEEeC---------------
Confidence 455554 456679999998754 334444333444 55554431 44554320
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCce-EEEEecCCeEEE-EEecC--cEEEEEeCC----eEEEEeCCCCcee
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-VHVLRFRSTVYM-VRCSP--RIVAVGLAA----QIYCFDALTLESK 231 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-V~tL~f~s~V~s-V~~s~--~~LaV~~~~----~I~i~D~~t~e~~ 231 (627)
....|.+||+++++. +..+........ +.+++ ++|+++..+ +|++||+.+++.+
T Consensus 60 ------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 60 ------------------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp ------------------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred ------------------CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE
Confidence 125799999999998 788876664455 99987 577766555 8999999999887
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ 311 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~ 311 (627)
..+.....+ +.+++.++...+
T Consensus 122 ~~~~~~~~~---------------------~~~~~spdg~~l-------------------------------------- 142 (331)
T 3u4y_A 122 STIPIPYDA---------------------VGIAISPNGNGL-------------------------------------- 142 (331)
T ss_dssp EEEECCTTE---------------------EEEEECTTSSCE--------------------------------------
T ss_pred EEEECCCCc---------------------cceEECCCCCEE--------------------------------------
Confidence 766432211 234444321100
Q ss_pred hhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe-EEEEECCCCeEE----EEeccCCC
Q 046828 312 LAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM-VVVKDIVSRSVI----SQFRAHTS 386 (627)
Q Consensus 312 l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~-V~IwD~~s~~~l----~~~~aH~~ 386 (627)
+ + ....++. |.+||+.....+ .....+..
T Consensus 143 -----~---------~--------------------------------~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 176 (331)
T 3u4y_A 143 -----I---------L--------------------------------IDRSSANTVRRFKIDADGVLFDTGQEFISGGT 176 (331)
T ss_dssp -----E---------E--------------------------------EEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred -----E---------E--------------------------------EecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence 0 0 0112345 788887653322 11223345
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
.+..++|+|||++|+.++.....|++||+. ++.. ...+..+..+ ..+.+++|+|||++|++
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~-------~~~~---------~~~~~~~~~~---~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIGNSIGILETQ-------NPEN---------ITLLNAVGTN---NLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEECS-------STTS---------CEEEEEEECS---SCCCCEEECTTSSEEEE
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECC-------CCcc---------cceeeeccCC---CCCceEEECCCCCEEEE
Confidence 679999999999766665433348999985 2320 0124444332 34788999999998877
Q ss_pred Ee-CCCeEEEEEcCC
Q 046828 467 VS-SRGTCHIFVLTP 480 (627)
Q Consensus 467 ~S-~dgTvhIw~i~~ 480 (627)
++ .+++|.+|++..
T Consensus 238 ~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 238 LTESTVDVFNFNQLS 252 (331)
T ss_dssp ECSSEEEEEEEETTT
T ss_pred EEcCCCEEEEEECCC
Confidence 66 478899999864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=149.82 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=73.9
Q ss_pred eEEEEECCC-CeEEEEec--cCCCCeEEEEECCCCCEEEEEeC-----CCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 366 MVVVKDIVS-RSVISQFR--AHTSPISALCFDRSGTLLVTASI-----HGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 366 ~V~IwD~~s-~~~l~~~~--aH~~~Is~laFspdG~lLaTaS~-----dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
.|.+||+.+ ++...... .|...+..++| |||++|+.++. ++ .|++||+. +|. .
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~-~i~~~d~~-------~g~----------~ 324 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKL-DLVEVTLA-------SNQ----------Q 324 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEE-EEEEEETT-------TCC----------E
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeE-EEEEEECC-------CCc----------e
Confidence 678899998 87655443 47788999999 99999998764 33 37889975 232 0
Q ss_pred eEEEEEeecCCcC---cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 438 VHLYKLHRGMTSA---VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 438 ~~l~~l~rG~t~a---~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
..+. .++... .+.+++|||||++|++++.+|+++||.++..++...+..|..
T Consensus 325 ~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~ 379 (741)
T 2ecf_A 325 RVLA---HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNW 379 (741)
T ss_dssp EEEE---EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSS
T ss_pred EEEE---EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecce
Confidence 1222 222222 246899999999999999999999999986555444555533
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-12 Score=126.57 Aligned_cols=181 Identities=11% Similarity=0.111 Sum_probs=124.1
Q ss_pred CCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCC-CceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 178 SPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALT-LESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t-~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
.+.+|++||+.+++......+...|.++++++ ++|+++.++.|++||+.+ ++.......+... .+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------~~ 87 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI------------CN 87 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC------------BC
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc------------cc
Confidence 35889999999999887777888999999997 788888899999999999 7755433222111 01
Q ss_pred ceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
..++++| ++|+++...
T Consensus 88 ~~~~~spdg~~l~~~~~~-------------------------------------------------------------- 105 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKV-------------------------------------------------------------- 105 (297)
T ss_dssp SCCEECTTSSEEEEEECT--------------------------------------------------------------
T ss_pred cceEECCCCCEEEEEEeC--------------------------------------------------------------
Confidence 2234433 455554310
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCCCEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLV-TASIHGNNIN 411 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLa-TaS~dGt~I~ 411 (627)
......|.+||+.+++ ...+..+. .+..++|+|||+.|+ +++.+++ ++
T Consensus 106 ----------------------------~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~-~~ 154 (297)
T 2ojh_A 106 ----------------------------EFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQV-FD 154 (297)
T ss_dssp ----------------------------TTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTE-EE
T ss_pred ----------------------------CCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCc-eE
Confidence 0123455666666654 34454443 489999999999888 7778886 79
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCC
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGG 483 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg 483 (627)
||++... .+ ....+.. + ...+.+++|+||+++|+.++ .+++++||.++..++
T Consensus 155 l~~~~~~-----~~-------------~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~ 207 (297)
T 2ojh_A 155 IYSMDID-----SG-------------VETRLTH-G-EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS 207 (297)
T ss_dssp EEEEETT-----TC-------------CEEECCC-S-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred EEEEECC-----CC-------------cceEccc-C-CCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence 9997422 11 2233322 2 23589999999999998877 499999999985443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-12 Score=128.16 Aligned_cols=88 Identities=6% Similarity=0.004 Sum_probs=65.1
Q ss_pred EEECCCCeE-EEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 369 VKDIVSRSV-ISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 369 IwD~~s~~~-l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
.+|+.+++. +..+..+...+..++|+| ||++|+++ +++ |.+||+. ++ ..+..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~-------~~------------~~~~~~~~~ 294 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLK-------QR------------KLIKAANLD 294 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETT-------TT------------EEEEEEECS
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECc-------cC------------eEEEEEcCC
Confidence 367666643 223345667889999999 99999998 565 8999985 23 133344323
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..+.+++|+||+++|++++.+++|++|++...
T Consensus 295 ---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 295 ---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp ---SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred ---CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 23689999999999999999999999998764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-11 Score=125.69 Aligned_cols=104 Identities=8% Similarity=0.203 Sum_probs=69.5
Q ss_pred CCCeEEEEECCC--CeE--EEEeccCC------CCeEEEEECCCCCEEE-EEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 363 IAGMVVVKDIVS--RSV--ISQFRAHT------SPISALCFDRSGTLLV-TASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 363 ~dG~V~IwD~~s--~~~--l~~~~aH~------~~Is~laFspdG~lLa-TaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
.++.|.+||+.. ++. +..+..+. ..+..++|+|||++|+ +...+++ |.||++.+. |.
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~~~------g~----- 274 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVTAD------GH----- 274 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEECGG------GC-----
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEECCC------Cc-----
Confidence 457788888763 432 33443333 3488999999999875 4555665 899998521 11
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCCCCCee
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTPFGGET 485 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~~gg~~ 485 (627)
...+..+.. . ...+.+++|+|||++|++++.+ ++|.||+++...|..
T Consensus 275 -----~~~~~~~~~-~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 275 -----LTLIQQIST-E-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp -----EEEEEEEEC-S-SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred -----EEEeEEEec-C-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 123333322 1 1247899999999999988865 899999998765544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-11 Score=124.82 Aligned_cols=105 Identities=12% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCCeEEEEECCCCeE--EEEec---cCCCCeEEEEECCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 363 IAGMVVVKDIVSRSV--ISQFR---AHTSPISALCFDRSGTLLVTASIH-GNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~--l~~~~---aH~~~Is~laFspdG~lLaTaS~d-Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.++.|.+||+.+++. +..+. .|......++|+|||++|+.+..+ ...|+||++.+. +|.
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~g~---------- 295 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----NGT---------- 295 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----TCC----------
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----CCc----------
Confidence 467899999987643 33333 334557899999999999777765 334899998532 221
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCCee
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGGET 485 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg~~ 485 (627)
...+..+..| ..+.+++|+|||++|++++ .+++|.||+++...+..
T Consensus 296 ~~~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 296 LTKVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 1133333222 3478999999999999988 67999999998766554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-12 Score=146.65 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=135.5
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCC-----CceeEEEEcCCCCCCCCCCCcCcc-
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALT-----LESKFSVLTYPVPHFGGQGTSGVN- 251 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t-----~e~~~tl~~~p~~~~~~~g~~~~~- 251 (627)
.+|++||+.+++..........+.++++++ +.|+.+.++.|++||+.+ ++........... ...|..
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-----~~~g~~~ 175 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTET-----LVYGQAV 175 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTT-----EEESSCC
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCC-----eEcccch
Confidence 569999999998776666777888999997 688888889999999998 7654322111100 000000
Q ss_pred -----cccceeeEcC--ceEEEcCCCCC-cCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcc
Q 046828 252 -----IGYGPMAVGP--RWLAYASNNPL-LPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMG 323 (627)
Q Consensus 252 -----~~~~~iAl~~--r~LAy~~~~~~-v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g 323 (627)
-....++++| ++||++..+.. +.... +...+. .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~--------------------------------------~~~~~~-~ 216 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP--------------------------------------IVDYHP-L 216 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE--------------------------------------EEECCS-S
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEE--------------------------------------eeccCC-C
Confidence 0012355654 78888762211 00000 000000 0
Q ss_pred eeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec--cCCCCeEEEEECCCCCEEE
Q 046828 324 YKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR--AHTSPISALCFDRSGTLLV 401 (627)
Q Consensus 324 ~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspdG~lLa 401 (627)
+.....+. .| +.| ....+..|.+||+.+++...... .|...+..++|+|||+.|+
T Consensus 217 ~~~~~~~~---y~-------------~~g-------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 217 EAESKPLY---YP-------------MAG-------TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp SCEEEEEC---CC-------------BTT-------SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred CCceEEee---CC-------------CCC-------CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 00000000 00 000 12345789999999987654442 5677899999999999999
Q ss_pred EEeCCC----CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC---cEEEEEEcc--CCCEEEEEeCCCe
Q 046828 402 TASIHG----NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA---VIQDICFSH--YSQWIAIVSSRGT 472 (627)
Q Consensus 402 TaS~dG----t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a---~I~sIaFSp--Dg~~Las~S~dgT 472 (627)
+++.++ ..|++||+. +|. .+..+....... .+.+++||| ||++|++++.+|+
T Consensus 274 ~~~~~~~~~~~~v~~~d~~-------~g~------------~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 274 VAEVNRAQNECKVNAYDAE-------TGR------------FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp EEEECTTSCEEEEEEEETT-------TCC------------EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred EEEeCCCCCeeEEEEEECC-------CCc------------eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 988765 248999985 231 122222111111 246789999 9999999999999
Q ss_pred EEEEEcCCCCCe-eeccccc
Q 046828 473 CHIFVLTPFGGE-TVLQIQN 491 (627)
Q Consensus 473 vhIw~i~~~gg~-~~~~~h~ 491 (627)
++||.++..++. ..+..|.
T Consensus 335 ~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp CEEEEEETTSCEEEECCCSS
T ss_pred cEEEEEECCCCEEEecCCCC
Confidence 999999854443 3344443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-11 Score=135.07 Aligned_cols=102 Identities=11% Similarity=0.144 Sum_probs=77.8
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
++.||+|+|||+.++..+.....|...|.+++|+|+|++||+++.||+ |+|||+. +. ..
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~--------~~------------~~ 226 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT--------LQ------------EK 226 (434)
T ss_dssp EETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT--------CC------------EE
T ss_pred EECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC--------Cc------------cc
Confidence 457899999999999877777889999999999999999999999998 7999974 11 12
Q ss_pred EEEe--ecC---CcCcEEEEEEccCCCEEEEE-eCCCe------EEEEEcCCCCC
Q 046828 441 YKLH--RGM---TSAVIQDICFSHYSQWIAIV-SSRGT------CHIFVLTPFGG 483 (627)
Q Consensus 441 ~~l~--rG~---t~a~I~sIaFSpDg~~Las~-S~dgT------vhIw~i~~~gg 483 (627)
..+. ... ....|.+|+|++++.++++. +.+|. +++|++...++
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 2221 111 11269999999999998664 34433 89999986543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-12 Score=144.06 Aligned_cols=275 Identities=15% Similarity=0.060 Sum_probs=156.1
Q ss_pred EEEEeccCcEEEEecCCCCCceEEeeecCC---ceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 83 VLLLGYSNGFQVLDVEDATNVSELVSRRDD---PVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 83 vl~~Gy~~G~qVWdv~~~~~~~ells~~dG---~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
++..+.++.+++||+++.. ...++..++. .|..+.+.|.- ..|+....+...
T Consensus 30 ~~~~~~dg~i~~~d~~~g~-~~~~~~~~~~~~~~v~~~~~SpDg-------------~~l~~~~~~~~~----------- 84 (723)
T 1xfd_A 30 FIYREQKGTVRLWNVETNT-STVLIEGKKIESLRAIRYEISPDR-------------EYALFSYNVEPI----------- 84 (723)
T ss_dssp BCCCCSSSCEEEBCGGGCC-CEEEECTTTTTTTTCSEEEECTTS-------------SEEEEEESCCCC-----------
T ss_pred EEEEeCCCCEEEEECCCCc-EEEEeccccccccccceEEECCCC-------------CEEEEEecCccc-----------
Confidence 4444677889999999855 4566655554 36677776542 566665422110
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC----CeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR----STVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFS 233 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~----s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~t 233 (627)
+ .......|.+||+.+++. ..+... ..|..+++|| +.||.+..++|++||+.+++....
T Consensus 85 --------~------~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~ 149 (723)
T 1xfd_A 85 --------Y------QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRV 149 (723)
T ss_dssp --------S------SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEE
T ss_pred --------e------eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEE
Confidence 0 011347899999999986 444321 2488899998 788888889999999999886544
Q ss_pred EEcCCCCCCCCCCCcC------cccccceeeEcC--ceEEEcCCCCC-cCCCCccCCCCCCCCCCCCCCCCCCCcccchh
Q 046828 234 VLTYPVPHFGGQGTSG------VNIGYGPMAVGP--RWLAYASNNPL-LPNTGRLSPQSLTPPSVSPSTSPSNGNLMARY 304 (627)
Q Consensus 234 l~~~p~~~~~~~g~~~------~~~~~~~iAl~~--r~LAy~~~~~~-v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~ 304 (627)
...+.... .-.|... ..-....++++| ++|||+..+.. +..+.. .....
T Consensus 150 ~~~~~~~~-~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~---~~~~~------------------ 207 (723)
T 1xfd_A 150 VSTGKEGV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL---PTYTG------------------ 207 (723)
T ss_dssp ECCCBTTT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE---CCCSS------------------
T ss_pred ecCCCCCc-eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEe---eccCC------------------
Confidence 43321110 0000000 000013466665 78888764311 100000 00000
Q ss_pred hhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC
Q 046828 305 AVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH 384 (627)
Q Consensus 305 a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH 384 (627)
. .......+ .| .++| ....+..|.+||+.+++....+..|
T Consensus 208 ---------~-----~~~~~~~~-~~----~~~G---------------------~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 208 ---------S-----IYPTVKPY-HY----PKAG---------------------SENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp ---------S-----SSCCCEEE-EC----CBTT---------------------SCCCEEEEEEEESSSSCCCEECCCC
T ss_pred ---------c-----CCCcceec-cC----CCCC---------------------CCCCeeEEEEEECCCCceeEEeeCC
Confidence 0 00000000 00 0011 0123458999999998866677765
Q ss_pred ------CCCeEEEEECCCCCEEEEEeCCC---CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE---
Q 046828 385 ------TSPISALCFDRSGTLLVTASIHG---NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI--- 452 (627)
Q Consensus 385 ------~~~Is~laFspdG~lLaTaS~dG---t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I--- 452 (627)
...+..++|+|||++|++.+..+ ..|++||+. +|. .. ++........+
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~-------~g~------------~~-~~~~~~~~~~~~~~ 307 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT-------TGV------------CT-KKHEDESEAWLHRQ 307 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT-------TCC------------EE-EEEEEECSSCCCCC
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC-------CCc------------ce-EEEEeccCCEEecc
Confidence 56799999999999998876542 348899985 232 11 12122111223
Q ss_pred -EEEEEccCCCEEEE--EeCCC----eEEEEEcC
Q 046828 453 -QDICFSHYSQWIAI--VSSRG----TCHIFVLT 479 (627)
Q Consensus 453 -~sIaFSpDg~~Las--~S~dg----TvhIw~i~ 479 (627)
..++|||||++|+. +..++ +.+||.++
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 37899999998886 45677 77777776
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-11 Score=144.56 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=78.9
Q ss_pred CCeEE-EEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVV-VKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~-IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
++.+. +||+.+++.. .+..|...+..++|+|||++||+++.+++ |++||+. +| .+..
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~-------tg-------------~~~~ 414 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLE-------TG-------------KPTV 414 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETT-------TC-------------CEEE
T ss_pred CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCe-EEEEECC-------CC-------------ceEE
Confidence 45677 8898877654 45588889999999999999999999987 7999986 33 2233
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCC----------eEEEEEcCCCCCeeecccccc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRG----------TCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dg----------TvhIw~i~~~gg~~~~~~h~s 492 (627)
+..++. ..|.+++|||||++||.++.++ +|++|++... ....+..|..
T Consensus 415 ~~~~~~-~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~~~~l~~~~~ 472 (1045)
T 1k32_A 415 IERSRE-AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-KIFAATTENS 472 (1045)
T ss_dssp EEECSS-SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-EEEECSCSSS
T ss_pred eccCCC-CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-cEEEeeCCCc
Confidence 334543 3589999999999999988755 9999999753 2444555543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-11 Score=138.16 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=73.2
Q ss_pred CCCeEEEEECCCCeEEEEeccCCC----CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTS----PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~----~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+..|.+||+.+++....+..|.. .+..++|+|||++|++++.+|+ ++||.+... + .
T Consensus 310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~------~------------~ 370 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK------G------------K 370 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS------S------------C
T ss_pred CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC------C------------C
Confidence 467899999999988777776654 5678999999999999999997 688887421 2 1
Q ss_pred EEEEEeecCCcCcEEEE-EEccCCCEEEEEeC-CC--eEEEEEcCCCCC
Q 046828 439 HLYKLHRGMTSAVIQDI-CFSHYSQWIAIVSS-RG--TCHIFVLTPFGG 483 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sI-aFSpDg~~Las~S~-dg--TvhIw~i~~~gg 483 (627)
+..+..+ + ..|.++ +||||+++|+..+. ++ +++||+++..+.
T Consensus 371 -~~~l~~~-~-~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 371 -AAALTHG-N-WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp -EEESCCS-S-SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred -eeeeeec-c-eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 3334322 2 347777 59999998876554 44 999999976554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=119.33 Aligned_cols=189 Identities=13% Similarity=0.061 Sum_probs=132.7
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+++|.+||+.+++.+.++.....+..+.+++ +.|.++. ++.|++||+.+++.+..+..+..... .. .
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~--------~ 138 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT-EE--------V 138 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC-SS--------C
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc-cc--------c
Confidence 3789999999999999999877788899987 5555554 36899999999998877765321100 00 0
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
.+ ..++-+++.++... + .+.
T Consensus 139 ~~--~~~~~~~~s~dg~~-------------------------------------------l---------~~~------ 158 (353)
T 3vgz_A 139 RP--LQPRELVADDATNT-------------------------------------------V---------YIS------ 158 (353)
T ss_dssp CC--CEEEEEEEETTTTE-------------------------------------------E---------EEE------
T ss_pred CC--CCCceEEECCCCCE-------------------------------------------E---------EEE------
Confidence 00 12244555543210 0 000
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
....++.|.+||+.+++.+..+..+...+..++|+|+|++|++++.+|. |.+||
T Consensus 159 -------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-i~~~d 212 (353)
T 3vgz_A 159 -------------------------GIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE-LITID 212 (353)
T ss_dssp -------------------------EESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSE-EEEEE
T ss_pred -------------------------ecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCe-EEEEE
Confidence 0124688999999999999888867777889999999999999999887 78999
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCC--cCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCCC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT--SAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTPF 481 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t--~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~~ 481 (627)
+. ++ ..+..+.-+.. ...+.+++|+||+++|++++.+ ++|++|++...
T Consensus 213 ~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 213 TA-------DN------------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp TT-------TT------------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred CC-------CC------------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 85 23 13333332211 2348899999999988877765 99999998654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-11 Score=135.84 Aligned_cols=91 Identities=8% Similarity=0.033 Sum_probs=71.2
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC-EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
+.|.+||+.+++.. .+..|...+..++|||||++|++++.+|. .|++||+. +|. .. +
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~-------~~~------------~~--~ 232 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR-------DGS------------VE--D 232 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT-------TCC------------EE--E
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC-------CCc------------EE--E
Confidence 46999999988754 67888889999999999999998888882 37899975 231 22 3
Q ss_pred eecCCcCcEEEEE--------EccCCCEEEEEeCCCeEEEEEc
Q 046828 444 HRGMTSAVIQDIC--------FSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 444 ~rG~t~a~I~sIa--------FSpDg~~Las~S~dgTvhIw~i 478 (627)
..++. ..|.+++ |||||+.+++++.+|+++||++
T Consensus 233 ~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 233 LELPS-KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCCSC-SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccCCC-cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 34443 2355555 9999999999999999999998
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-10 Score=116.20 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=69.2
Q ss_pred CCeEEEEECC-CCeE--EEEec--cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIV-SRSV--ISQFR--AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~-s~~~--l~~~~--aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
++.|.+||+. +++. +..+. .|...+..++|+|||++|++++..+..|.||++.+. +|. ..
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~----------~~ 230 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THM----------PV 230 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCC----------EE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCc----------EE
Confidence 4689999998 6653 33444 356678999999999999998875445899987532 221 00
Q ss_pred E-EEEEe---ecCCc-C-------cEEEEE-EccCCCEEEEEeCCC------eEEEEEcCCCC
Q 046828 439 H-LYKLH---RGMTS-A-------VIQDIC-FSHYSQWIAIVSSRG------TCHIFVLTPFG 482 (627)
Q Consensus 439 ~-l~~l~---rG~t~-a-------~I~sIa-FSpDg~~Las~S~dg------TvhIw~i~~~g 482 (627)
. ...+. .+... . .+.+++ |||||++|++++.+. +|.||+++..+
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g 293 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence 1 11121 11111 1 488999 999999998876533 89999997533
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-11 Score=137.14 Aligned_cols=100 Identities=13% Similarity=0.222 Sum_probs=67.8
Q ss_pred CCeEEEEECCCCeEEEEec--cCC---CCeEEEEECC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 364 AGMVVVKDIVSRSVISQFR--AHT---SPISALCFDR--SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~--aH~---~~Is~laFsp--dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
...|.+||+.+++.+..+. .+. ..+..++|+| ||++|++++.+|+ ++||++... +
T Consensus 283 ~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~------~----------- 344 (706)
T 2z3z_A 283 ECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTT------G----------- 344 (706)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETT------S-----------
T ss_pred eeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc-cEEEEEECC------C-----------
Confidence 4579999999984333332 222 2357789999 9999999999998 799987521 2
Q ss_pred eeEEEEEeecCCcCcEEE-EEEccCCCEEEEEeCCC---eEEEEEcCCCCCe
Q 046828 437 HVHLYKLHRGMTSAVIQD-ICFSHYSQWIAIVSSRG---TCHIFVLTPFGGE 484 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~s-IaFSpDg~~Las~S~dg---TvhIw~i~~~gg~ 484 (627)
..+..+..+ . ..|.+ ++||||+++|+.++.+. .++||.++..++.
T Consensus 345 -~~~~~l~~~-~-~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 345 -RLIRQVTKG-E-WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp -CEEEECCCS-S-SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred -CEEEecCCC-C-eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 144455333 2 34666 79999999998776654 3677766654443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=134.03 Aligned_cols=97 Identities=11% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCCCCeEEEEECCCC--------e---EEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCc
Q 046828 361 TDIAGMVVVKDIVSR--------S---VISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~--------~---~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~ 428 (627)
++.|+.|+|||+.+. + .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+. ++
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~-------~~--- 182 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVT-------ET--- 182 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEES-------SS---
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcC-------CC---
Confidence 457899999998654 2 25667789999999999998 899999999998 7999996 22
Q ss_pred cccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 429 QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 429 ~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
..+... .++. ..|.+++|+|||++||+++.||+|+||++.
T Consensus 183 ---------~~~~~~-~~~~-~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 183 ---------VKVCAT-LPST-VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp ---------EEEEEE-ECGG-GCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred ---------cceeec-cCCC-CceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 133333 3443 459999999999999999999999999987
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-09 Score=111.14 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=67.7
Q ss_pred CCCeEEEEECC-CCeE--EEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIV-SRSV--ISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~-s~~~--l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.++.|.+||+. +++. +..+..+ ...+..++|+|||++|+.++..+..|+||++... +|. ..
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~----------~~ 224 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TGA----------FT 224 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TTE----------EE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CCc----------eE
Confidence 46789999998 4432 2333333 2357889999999977776655445899998621 121 01
Q ss_pred EEEEEeecCCc-----CcEEEEEEccCCCEEEE-EeCCCeEEEEEcCCCC
Q 046828 439 HLYKLHRGMTS-----AVIQDICFSHYSQWIAI-VSSRGTCHIFVLTPFG 482 (627)
Q Consensus 439 ~l~~l~rG~t~-----a~I~sIaFSpDg~~Las-~S~dgTvhIw~i~~~g 482 (627)
.+..+.. ... ..+..++|||||++|++ ...+++|+||+++..+
T Consensus 225 ~~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 225 QLGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp EEEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred Eeeeeee-cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 2222211 111 24899999999998854 5568999999997543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-09 Score=112.87 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=67.8
Q ss_pred CCCeEEEEECCCCe-------E------EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc
Q 046828 363 IAGMVVVKDIVSRS-------V------ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 363 ~dG~V~IwD~~s~~-------~------l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
.++.|.+||+.... . ......+...+..++|+|||++|+.++.....|++||+. +|.
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~-------~g~--- 244 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA-------DGM--- 244 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE-------TTE---
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec-------CCc---
Confidence 46788999876433 1 111223445678999999999988888533348999985 221
Q ss_pred ccCCCCceeEEEEEeecCC-cCcEEEEEEccCCCEEEEEeCC--CeEEEEEcCCCCC
Q 046828 430 TYDWTSSHVHLYKLHRGMT-SAVIQDICFSHYSQWIAIVSSR--GTCHIFVLTPFGG 483 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~t-~a~I~sIaFSpDg~~Las~S~d--gTvhIw~i~~~gg 483 (627)
...+..+..... .....+|+|||||++|+++..+ ++|.||++++..+
T Consensus 245 -------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g 294 (361)
T 3scy_A 245 -------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG 294 (361)
T ss_dssp -------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred -------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence 012222221111 1236899999999999877765 8999999985443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-09 Score=115.27 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=53.9
Q ss_pred CeEEEE-ECCCCCEEEEEeCCCC-----EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-
Q 046828 387 PISALC-FDRSGTLLVTASIHGN-----NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH- 459 (627)
Q Consensus 387 ~Is~la-FspdG~lLaTaS~dGt-----~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp- 459 (627)
.+..++ |+|||++|++++.... .|+||++.+. |. ...+..+.... ...+..++|+|
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~------g~----------~~~~~~~~~~~-~~~~~~~a~sp~ 317 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS----------IEKQLFLSPTP-TSGGHSNAVSPC 317 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC----------EEEEEEEEECS-SCCTTCCCEEEC
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC------CC----------EEEeeeeeecC-CCCcccceecCC
Confidence 488999 9999999988765443 5899998521 21 01111111211 12356789999
Q ss_pred --CCCEEEEEeCC-CeEEEEEcCCC
Q 046828 460 --YSQWIAIVSSR-GTCHIFVLTPF 481 (627)
Q Consensus 460 --Dg~~Las~S~d-gTvhIw~i~~~ 481 (627)
||++|++++.+ ++|.||+++..
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999875 89999999753
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.5e-10 Score=111.76 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=46.6
Q ss_pred cEEEEEECCCCceEEEEecCC---eEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEE
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS---TVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~ 235 (627)
++|.+||+.+++.+.++.... .+..+++++ +.|+++. +++|++||+.+++.+..+.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 679999999999999999777 688999987 4565554 4589999999999877765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-10 Score=136.06 Aligned_cols=95 Identities=8% Similarity=0.007 Sum_probs=77.4
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC---------CEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG---------NNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG---------t~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
.++.|++||+.+++....+..|..+|..++|+|||++||+++.++ ..|++||+. ++
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~-------~g-------- 462 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-------GR-------- 462 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-------TT--------
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC-------CC--------
Confidence 456899999999988888889999999999999999999988754 348999985 22
Q ss_pred CCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 434 TSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+..+. ++ ...+.+++|+|||++|+..+.++...+|+..
T Consensus 463 -----~~~~l~-~~-~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 463 -----KIFAAT-TE-NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp -----EEEECS-CS-SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred -----cEEEee-CC-CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 344442 32 2348899999999999999999999999865
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=132.45 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=43.0
Q ss_pred CcEEEEEECCCCceEEEEecCC----eEEEEEecC--cEEEEEeC----------CeEEEEeCCCCce
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS----TVYMVRCSP--RIVAVGLA----------AQIYCFDALTLES 230 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s----~V~sV~~s~--~~LaV~~~----------~~I~i~D~~t~e~ 230 (627)
+++|++||+.+++....+..+. .|.+++||+ +.|+.+.. ..|++||+.+++.
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence 3679999999999988887654 389999998 77887764 5799999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.5e-11 Score=134.62 Aligned_cols=283 Identities=14% Similarity=0.072 Sum_probs=155.0
Q ss_pred eEEEEeccCcEEEEecCCCCCceEEeeecCC---ceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 82 HVLLLGYSNGFQVLDVEDATNVSELVSRRDD---PVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 82 ~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG---~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+++..+.++.+.+||+..+. .+.++..+.. .+..+.+.|.- ..||+.. +..
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~SpDg-------------~~la~~~-~~~----------- 81 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQ-SYTILSNRTMKSVNASNYGLSPDR-------------QFVYLES-DYS----------- 81 (719)
T ss_dssp EEEEECTTSCEEEEESSSCC-EEEEECHHHHHTTTCSEEEECTTS-------------SEEEEEE-EEE-----------
T ss_pred eEEEEcCCCCEEEEEcCCCc-EEEEEccccccccceeeEEECCCC-------------CeEEEEe-cCc-----------
Confidence 56767778899999999755 4555544432 26666766532 5666543 110
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEc
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|. ...+.+|++||+.+++.+...+....+.++++|| +.||.+.+++|++||+.+++... +..
T Consensus 82 -------~~~~------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~-l~~ 147 (719)
T 1z68_A 82 -------KLWR------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ-ITF 147 (719)
T ss_dssp -------ECSS------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCC
T ss_pred -------eeEE------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE-Eec
Confidence 0010 0113689999999998743233456788999998 78888888999999999987643 221
Q ss_pred CCCCCCCCCCCcCc------ccccceeeEcC--ceEEEcCCCC-CcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 237 YPVPHFGGQGTSGV------NIGYGPMAVGP--RWLAYASNNP-LLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 237 ~p~~~~~~~g~~~~------~~~~~~iAl~~--r~LAy~~~~~-~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.......-.|.+.. ......++++| ++|||+..+. .+..+
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~------------------------------- 196 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVI------------------------------- 196 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEE-------------------------------
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceE-------------------------------
Confidence 11100000000000 00012466665 7899876321 11000
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEE--------E
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVI--------S 379 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l--------~ 379 (627)
.+...++..+.....+. .| +.| .......|.+||+.+++.+ .
T Consensus 197 -------~~~~~~~~~~~~~~~~~---yp-------------~~g-------~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 197 -------AYSYYGDEQYPRTINIP---YP-------------KAG-------AKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp -------EEEECCSSSSCEEEEEE---CC-------------BTT-------SCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred -------EeeccCCCCCccceeec---CC-------------CCC-------CCCCeeEEEEEECCCCCccceeEccCCc
Confidence 00000000111111110 00 001 1123457999999987642 1
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCC---CEEEEEe----CCCCCCCCCCCCCccccCCCCceeEEEE-EeecCCcCc
Q 046828 380 QFRAHTSPISALCFDRSGTLLVTASIHG---NNINIFR----IMPSSSKGRSGSASQTYDWTSSHVHLYK-LHRGMTSAV 451 (627)
Q Consensus 380 ~~~aH~~~Is~laFspdG~lLaTaS~dG---t~I~Vwd----i~p~~~~~~~g~~~~~~~~~~~~~~l~~-l~rG~t~a~ 451 (627)
.+..|...+..++|+|||+++++....+ ..|.+|| +. +|.. ..+.+ .+.++. ..
T Consensus 247 ~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-------~g~~----------~~~~~~~~~~~~-~~ 308 (719)
T 1z68_A 247 MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ-------TWDC----------PKTQEHIEESRT-GW 308 (719)
T ss_dssp HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS-------SEEC----------CGGGEEEEECSS-SC
T ss_pred cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC-------CCce----------EEEEecccccCC-ce
Confidence 2346888899999999999888865432 1367788 53 2210 01110 012332 23
Q ss_pred EE-----EEEEccCCCEEEE--EeCCCeEEEEEcCCCCC
Q 046828 452 IQ-----DICFSHYSQWIAI--VSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 452 I~-----sIaFSpDg~~Las--~S~dgTvhIw~i~~~gg 483 (627)
|. .++|||||++|+. +..+|..+||.++..++
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 44 7899999997665 55678777777665444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-10 Score=125.31 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=69.9
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC----CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH----GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d----Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
+.|||+.+++.......+. .+++|||||++||+++.+ ++ |++||+. +|. +..
T Consensus 134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~-i~~~d~~-------~g~-------------~~~ 189 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS-LFTSNLS-------SGG-------------LRV 189 (582)
T ss_dssp EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE-EEEEETT-------TCC-------------CEE
T ss_pred ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE-EEEEcCC-------CCC-------------ceE
Confidence 4499999887654444333 789999999999988876 44 8899975 231 223
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCC--eEEEEEcCCCCCeeecccccccc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRG--TCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dg--TvhIw~i~~~gg~~~~~~h~s~v 494 (627)
+ .++. ..+.+++|||||++|+++..++ +|++|+++..... .+..|...+
T Consensus 190 l-~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~ 240 (582)
T 3o4h_A 190 F-DSGE-GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDF 240 (582)
T ss_dssp E-CCSS-CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHH
T ss_pred e-ecCC-CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcCh
Confidence 3 3332 3589999999999999888899 7888887643322 334444333
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-09 Score=107.04 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=46.7
Q ss_pred cEEEEEECCCCceEEEEecCC--eEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS--TVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s--~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~~ 236 (627)
++|.+||+.+++.++++..+. .+..+++++ +.+.++. +++|++||+.+++.+..+..
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 679999999999999998776 788899987 5555543 46899999999988777753
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-10 Score=125.93 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred cEEEEEECCCCceEEEEecCCe----EEEEEecC--cEEEEEeC----------CeEEEEeCCCCce
Q 046828 180 TAVRFYSLRSHNYVHVLRFRST----VYMVRCSP--RIVAVGLA----------AQIYCFDALTLES 230 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~----V~sV~~s~--~~LaV~~~----------~~I~i~D~~t~e~ 230 (627)
++|++||+.+++....+..+.. |.++++|+ +.|+.+.. ++|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 5699999999998887776543 89999998 77877654 6899999999875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-08 Score=103.45 Aligned_cols=127 Identities=7% Similarity=-0.023 Sum_probs=71.0
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+++.++....+..+.+||++... ...+...+.+.+....+...|. + .+|+.+..+... ..+ ...
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~d------g-----~~l~~~~~~~~~-~~~---~~~ 154 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLE-ENVVYQVPAEWVGYGTWVANSD------C-----TKLVGIEIRRED-WVP---LTD 154 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTT------S-----SEEEEEEEEGGG-CCC---CCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCc-ceeeeechhhcccccceeECCC------C-----CeeccccccCcc-ccc---ccc
Confidence 34677777777889999999754 3455555555554444443442 1 344322211100 000 000
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEeC-------CeEEEEeCCCC
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGLA-------AQIYCFDALTL 228 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~~-------~~I~i~D~~t~ 228 (627)
...-.. .. .......|.+||+++++..........+..+.+++ +.|+.... .+|+++|+.+.
T Consensus 155 ~~~~~~--~~------~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 155 WKKFHE--FY------FTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp HHHHHH--HG------GGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred cchhhh--hh------ccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 000000 00 00123789999999998766666677889999998 46665543 26899998765
Q ss_pred c
Q 046828 229 E 229 (627)
Q Consensus 229 e 229 (627)
+
T Consensus 227 ~ 227 (388)
T 3pe7_A 227 N 227 (388)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.2e-08 Score=101.51 Aligned_cols=97 Identities=9% Similarity=0.023 Sum_probs=56.7
Q ss_pred CeEEEEECCCCeEEEEeccCC--CCeEEEEECCCCCEEEEEeCC-CC---EEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 365 GMVVVKDIVSRSVISQFRAHT--SPISALCFDRSGTLLVTASIH-GN---NINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~--~~Is~laFspdG~lLaTaS~d-Gt---~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
..|.++|+..++. ..+..+. ..+..++|+|||+.|+..+.+ |. .|.+||+. +|. ..
T Consensus 216 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~-------~g~----------~~ 277 (388)
T 3pe7_A 216 ARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE-------TLE----------NR 277 (388)
T ss_dssp CSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT-------TCC----------EE
T ss_pred ceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC-------CCc----------eE
Confidence 4577778765543 3444444 357889999999988765542 32 27899985 232 12
Q ss_pred EEEEEeecCCcC--cEEEEEEccCCCEEEEE---------eCCCeEEEEEcCC
Q 046828 439 HLYKLHRGMTSA--VIQDICFSHYSQWIAIV---------SSRGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~rG~t~a--~I~sIaFSpDg~~Las~---------S~dgTvhIw~i~~ 480 (627)
.+..+ .+.... ....++|||||++|+.. ..+..|++|++..
T Consensus 278 ~l~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 278 QLTSM-PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp EEEEE-CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEEcC-CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 33333 221000 01224799999999975 4456888888864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-06 Score=86.82 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=69.2
Q ss_pred CCCeEEEEECCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAH--TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH--~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.++.|.+||.. ++.+..+..+ ...+..|+|+|+|+++++...++..|++||.. |. .+
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--------g~------------~~ 241 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------GQ------------LI 241 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------SC------------EE
T ss_pred CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--------CC------------EE
Confidence 35789999974 4566666544 35789999999999999888775238999853 21 34
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+..+.....+.+|+|+|||+++++ +.+++|+||++..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 242 SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 44433322234889999999986666 6799999999764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-08 Score=117.49 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=72.0
Q ss_pred eEEEEeccCcEEEEecCCCCCceEEeeecCCce---EE--EEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee
Q 046828 82 HVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV---TF--LQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH 156 (627)
Q Consensus 82 ~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V---~~--v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~ 156 (627)
+++..+ ++.+.+||+.++. ...++..+...+ .+ +.+.| ....|++...+...
T Consensus 29 ~~~~~~-~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sp-------------dg~~l~~~~~~~~~-------- 85 (740)
T 4a5s_A 29 EYLYKQ-ENNILVFNAEYGN-SSVFLENSTFDEFGHSINDYSISP-------------DGQFILLEYNYVKQ-------- 85 (740)
T ss_dssp EEEEEE-TTEEEEEETTTCC-EEEEECTTTTTTCCSCCCEEEECT-------------TSSEEEEEEEEEEC--------
T ss_pred cEEEEc-CCcEEEEECCCCc-eEEEEechhhhhhcccccceEECC-------------CCCEEEEEECCeee--------
Confidence 566666 8899999999865 355666554321 22 33332 23566665422110
Q ss_pred ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCCCcee
Q 046828 157 VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALTLESK 231 (627)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~ 231 (627)
-| ......+.+||+++++......+...+..+++|| +.||.+.+..|++||+.+++..
T Consensus 86 ------~r-----------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 86 ------WR-----------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY 145 (740)
T ss_dssp ------SS-----------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred ------EE-----------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 00 0112568899999998654333566899999998 7889888999999999988743
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.95 E-value=9.9e-08 Score=100.76 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=43.8
Q ss_pred cEEEEEECCCCceEEEEecC-------CeEEEEEecC--cEEEEEe---CCeEEEEeCCCCceeEE
Q 046828 180 TAVRFYSLRSHNYVHVLRFR-------STVYMVRCSP--RIVAVGL---AAQIYCFDALTLESKFS 233 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~-------s~V~sV~~s~--~~LaV~~---~~~I~i~D~~t~e~~~t 233 (627)
.+|.+||+.+++.+.++... .....|++++ ++|.|+. ++.|.+||+.+++.+.+
T Consensus 81 ~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 81 DVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred CEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 67999999999999999753 3467789986 7777764 35799999999987766
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=115.65 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=39.2
Q ss_pred cEEEEEECCCCceEEEEecCC-e-----EEEEEecC--cEEEEEeC----------CeEEEEeCCCCcee
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS-T-----VYMVRCSP--RIVAVGLA----------AQIYCFDALTLESK 231 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s-~-----V~sV~~s~--~~LaV~~~----------~~I~i~D~~t~e~~ 231 (627)
++|++||+++++....+..+. . ..++.+|+ +.|+.+.. +.+++||+.+++..
T Consensus 36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence 679999999999887776543 2 23477787 67777765 56789999998753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-07 Score=106.74 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=69.8
Q ss_pred CeEEEEECC-CC---eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 365 GMVVVKDIV-SR---SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 365 G~V~IwD~~-s~---~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|+ ++||.+... .+ .+
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~-----~~-------------~~ 277 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPA-----TG-------------AA 277 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTT-----TC-------------CE
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECC-----CC-------------ce
Confidence 479999998 56 444444556788999999999998888888885 466655321 12 12
Q ss_pred EEEeecCCcC-------cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 441 YKLHRGMTSA-------VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 441 ~~l~rG~t~a-------~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.++..+.... .+.+++|++|++++++++. ++++||.++..++.
T Consensus 278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 2232222111 1567999999999999999 99999987765443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-06 Score=89.86 Aligned_cols=180 Identities=10% Similarity=0.021 Sum_probs=114.0
Q ss_pred cEEEEEECCCCceEEEEecCC------eEEEEEecCcEEEEEe---CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS------TVYMVRCSPRIVAVGL---AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s------~V~sV~~s~~~LaV~~---~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
+.|.+||+++++.+.++.... ....|.+..+.|.|+. +++|.+||+.+++.+.++.....|
T Consensus 105 ~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p---------- 174 (328)
T 3dsm_A 105 YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP---------- 174 (328)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB----------
T ss_pred CeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc----------
Confidence 679999999999998888655 5566666665555553 568999999999988777542222
Q ss_pred ccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEe
Q 046828 251 NIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLS 328 (627)
Q Consensus 251 ~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s 328 (627)
..+++++ ++++.+...
T Consensus 175 ----~~i~~~~dG~l~v~~~~~---------------------------------------------------------- 192 (328)
T 3dsm_A 175 ----TSLVMDKYNKMWTITDGG---------------------------------------------------------- 192 (328)
T ss_dssp ----CCCEECTTSEEEEEBCCB----------------------------------------------------------
T ss_pred ----cceEEcCCCCEEEEECCC----------------------------------------------------------
Confidence 1133332 211111100
Q ss_pred eeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeCCC
Q 046828 329 RYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH-TSPISALCFDRSGTLLVTASIHG 407 (627)
Q Consensus 329 ~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH-~~~Is~laFspdG~lLaTaS~dG 407 (627)
| +. .. .....+.|.++|..+++.+..+... ......|+|+|||++|..+..
T Consensus 193 -~------~~--------~~-----------~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 193 -Y------EG--------SP-----------YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp -C------TT--------CS-----------SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred -c------cC--------Cc-----------cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence 0 00 00 0113578999999999887777643 236789999999999988765
Q ss_pred CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE-----eCCCeEEEEEcC
Q 046828 408 NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV-----SSRGTCHIFVLT 479 (627)
Q Consensus 408 t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~-----S~dgTvhIw~i~ 479 (627)
+ |.+||+. ++.. ....+... .......|+++|++..|.++ ..+++|.+|+.+
T Consensus 245 ~-v~~~d~~-------t~~~-----------~~~~~~~~-~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 D-IWRMPVE-------ADRV-----------PVRPFLEF-RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp S-EEEEETT-------CSSC-----------CSSCSBCC-CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred E-EEEEECC-------CCce-----------eeeeeecC-CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 4 7889975 2210 00000010 02347899999955544444 578999999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.3e-07 Score=91.88 Aligned_cols=86 Identities=8% Similarity=0.074 Sum_probs=55.6
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-------CEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-------NNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-------t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.|.++| +++ +..+..+ ..+..+ +|||+.|+.++.++ ..|.+|| . +
T Consensus 201 ~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~--------~------------- 252 (347)
T 2gop_A 201 DIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-G--------K------------- 252 (347)
T ss_dssp EEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-S--------S-------------
T ss_pred cEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-C--------C-------------
Confidence 456666 444 3344444 455544 99999999888653 2355665 2 1
Q ss_pred EEEEEeecCCcCcEEE-EEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 439 HLYKLHRGMTSAVIQD-ICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~s-IaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
...++..++. ..|.. ++|+ |+ ++++++.+++++|| ++ .+..
T Consensus 253 ~~~~l~~~~~-~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~ 294 (347)
T 2gop_A 253 EVMGILDEVD-RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEI 294 (347)
T ss_dssp CEEESSTTCC-SEEEEEEEET-TE-EEEEEEETTEEEEE-EE-SSSE
T ss_pred ceEeccccCC-cccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-CCce
Confidence 1233333332 35776 9999 99 99999999999999 88 4443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-06 Score=89.06 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=69.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEE-EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISA-LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~-laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
...|.+|| +++....+..|...+.. ++|+ || ++++++.+|+ ++|| +. . | .+.+
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l~-~~-~------g-------------~~~~ 296 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNLY-IW-D------G-------------EIKP 296 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEEE-EE-S------S-------------SEEE
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEEE-Ec-C------C-------------ceEE
Confidence 45788888 55555555567778886 9999 99 9999999997 7999 85 2 2 1223
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeE-EEEEcCCCCCeeecccccc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTC-HIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTv-hIw~i~~~gg~~~~~~h~s 492 (627)
+..+ ...|.+++|+| +++++.+.+++. +||.++ +....+..|+.
T Consensus 297 ~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n~ 341 (347)
T 2gop_A 297 IAKG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYND 341 (347)
T ss_dssp EECS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTTS
T ss_pred EecC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEeccccH
Confidence 3333 34699999999 788888888776 899987 44445555544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-08 Score=100.55 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=62.6
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCC---------------CCEEEEEeCCCCCCCCCCCCCc
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIH---------------GNNINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~d---------------Gt~I~Vwdi~p~~~~~~~g~~~ 428 (627)
+.|.+||+.+++...... .. ... ++|+| ||++|++++.+ ...|.+||+. .+.
T Consensus 264 ~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~-------~~~-- 331 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK-------AKS-- 331 (396)
T ss_dssp EEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT-------TTB--
T ss_pred ceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc-------cCc--
Confidence 569999998876433221 11 233 89999 99999986521 2347889875 221
Q ss_pred cccCCCCceeEEEEEeecCCc---------CcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCCeeeccc
Q 046828 429 QTYDWTSSHVHLYKLHRGMTS---------AVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGGETVLQI 489 (627)
Q Consensus 429 ~~~~~~~~~~~l~~l~rG~t~---------a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg~~~~~~ 489 (627)
+.++...... ..+..++|+|||++|+..+. +++.+||.++..++...+..
T Consensus 332 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 332 -----------AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp -----------CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC----
T ss_pred -----------eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccccc
Confidence 1122121110 02566899999999988775 67889998886666655443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-06 Score=89.87 Aligned_cols=177 Identities=6% Similarity=-0.010 Sum_probs=115.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC-cEEEEEe--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccce
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-RIVAVGL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-~~LaV~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~ 256 (627)
++|.+||.++++.+.++........|++++ ..|.++. +++|++||+.+++...++...... +.
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-----~~--------- 129 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-----ME--------- 129 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----TT---------
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----cc---------
Confidence 679999999999999997656778888843 4454444 679999999999877776532210 00
Q ss_pred eeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccC
Q 046828 257 MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIP 336 (627)
Q Consensus 257 iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p 336 (627)
. -.|.-||+.. . + + | +.
T Consensus 130 ~-~~p~~i~~~~-~-------~-------------------------------------l-------y--v~-------- 146 (328)
T 3dsm_A 130 S-GSTEQMVQYG-K-------Y-------------------------------------V-------Y--VN-------- 146 (328)
T ss_dssp T-CBCCCEEEET-T-------E-------------------------------------E-------E--EE--------
T ss_pred C-CCcceEEEEC-C-------E-------------------------------------E-------E--EE--------
Confidence 0 0112233311 0 0 0 0 00
Q ss_pred CCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC----------
Q 046828 337 DGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH---------- 406 (627)
Q Consensus 337 ~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d---------- 406 (627)
..+.++.|.++|+.+++.+..+..... ...++|+|+|++++++..+
T Consensus 147 -----------------------~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 147 -----------------------CWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp -----------------------ECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred -----------------------cCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCC
Confidence 011367899999999998888875433 4678999999988887654
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+. |.+||.. ++. ....+.-.. ......|+|+||+++|.++.. +|.+|++..
T Consensus 203 ~~-v~~id~~-------t~~------------v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 203 PS-LYRIDAE-------TFT------------VEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp CE-EEEEETT-------TTE------------EEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred ce-EEEEECC-------CCe------------EEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence 44 7888864 221 222222110 124789999999999988765 888888753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.3e-06 Score=85.70 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=70.0
Q ss_pred CCCeEEEEECCCCeEEEEec--cCCCCeEEEEECCCCCEEEEEe-------CCCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 363 IAGMVVVKDIVSRSVISQFR--AHTSPISALCFDRSGTLLVTAS-------IHGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspdG~lLaTaS-------~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
.++.|++||..+++.+..+. .+...+..++|+| |.++++.+ .+.+ |++|+.. +|.
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~-v~~~~~~-------~g~------- 279 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ-GFVMNFS-------SGE------- 279 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC-EEEEETT-------TCC-------
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE-EEEEEcC-------CCe-------
Confidence 56789999999888888884 4667899999999 54444433 3335 7899975 332
Q ss_pred CCceeEEEEEe--ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 434 TSSHVHLYKLH--RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 434 ~~~~~~l~~l~--rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+..+. .+. ...+.+|+|+|||+.+++...+++|++|+++.
T Consensus 280 -----~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 280 -----IIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -----EEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred -----EEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 344432 122 12489999999998888888999999999864
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.4e-07 Score=91.66 Aligned_cols=97 Identities=7% Similarity=-0.069 Sum_probs=67.3
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCC-----EEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGN-----NINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt-----~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.+..|.+||+.+++..... .+...+..++|+| ||+.|+..+.++. .|.+||+. .+
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-------~~----------- 226 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-------GS----------- 226 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-------SC-----------
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC-------CC-----------
Confidence 4668999999988755444 5677899999999 8998888776432 36777764 11
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC-----CeEEEEEcCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR-----GTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d-----gTvhIw~i~~ 480 (627)
.+..+..+.....+..++|||||++|+.++.+ ++|++|++..
T Consensus 227 --~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 227 --NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp --CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred --ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 12223221112248889999999998888665 5589998864
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-05 Score=80.04 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=59.2
Q ss_pred CCCeEEEEECC-CCeE---EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIV-SRSV---ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~-s~~~---l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.++.|.+||+. +++. ...+..+...+..|+|+++|+++++. ++. |.+|+.. |.
T Consensus 191 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~--------g~------------ 247 (296)
T 3e5z_A 191 GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD--------GD------------ 247 (296)
T ss_dssp TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT--------SC------------
T ss_pred CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC--------CC------------
Confidence 34677788875 3433 23333455567789999999988877 454 7899853 21
Q ss_pred EEEEEeecCCcCcEEEEEE-ccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICF-SHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaF-SpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+..+. ... . +.+++| +||++.|.+++.++ ||.+++.
T Consensus 248 ~~~~~~-~~~-~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~ 285 (296)
T 3e5z_A 248 ELGRVL-TPQ-T-TSNLCFGGPEGRTLYMTVSTE---FWSIETN 285 (296)
T ss_dssp EEEEEE-CSS-C-CCEEEEESTTSCEEEEEETTE---EEEEECS
T ss_pred EEEEEE-CCC-C-ceeEEEECCCCCEEEEEcCCe---EEEEEcc
Confidence 333332 222 2 789999 68999999999874 5555543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-06 Score=92.78 Aligned_cols=80 Identities=9% Similarity=0.104 Sum_probs=58.4
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..+|.|.+||+.++.... +...|+|++|||+| ++.+..||+ |++|+.. .+. .....
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~-------~~~----------~~~k~ 198 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWR-------NGE----------MEKQF 198 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEE-------TTE----------EEEEE
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCC-------Ccc----------ccccc
Confidence 368999999999876543 45689999999999 678899998 7999763 110 00022
Q ss_pred EE------ee--cCCcCcEEEEEEccCCCEEEE
Q 046828 442 KL------HR--GMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 442 ~l------~r--G~t~a~I~sIaFSpDg~~Las 466 (627)
++ .. ++ ...|.+|.|.++++||++
T Consensus 199 ~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 199 EFSLPSELEELPVE-EYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EECCCHHHHTSCTT-TSEEEEEEESSSSEEEEE
T ss_pred eecCCcccccccCC-CeeEEEEEEecCCeEEEE
Confidence 23 11 23 356999999999999987
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-05 Score=90.55 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=65.9
Q ss_pred CCeEEEEECCCCe--EEEEeccCCC--CeEEEEECCCCCEEEEEeCCCCE-EEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSRS--VISQFRAHTS--PISALCFDRSGTLLVTASIHGNN-INIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~~--~l~~~~aH~~--~Is~laFspdG~lLaTaS~dGt~-I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+.|.+||+.++. ....+..|.. .|..++|++++.+++++..+|.. |.+|++. +|.
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~-------~g~------------ 370 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA-------TGA------------ 370 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-------TCC------------
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECC-------CCC------------
Confidence 4678889988764 2344555544 68889999999999999999863 4555653 231
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeC----CCeEEEEEcCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSS----RGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~----dgTvhIw~i~~ 480 (627)
.+.++. .. ...|..++|+||++.|+.... .+++.+|++..
T Consensus 371 ~~~~l~-~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 371 LLKIFP-LE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEC-CC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEecC-CC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 334442 22 456899999999987775422 46899999864
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.9e-06 Score=94.40 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=58.9
Q ss_pred eEEEEECCCCeEEEEeccCCCC--------eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 366 MVVVKDIVSRSVISQFRAHTSP--------ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~--------Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
.|.+||+.+++....+..|... +..++|+|+|+++++++. |+ ++||.+... .+
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~-----~~------------ 326 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE-----SG------------ 326 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT-----TT------------
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC-----CC------------
Confidence 5666776666544333333222 567999999999999999 87 699965321 12
Q ss_pred eEEEEEeecCCcCcEEEE-EEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 438 VHLYKLHRGMTSAVIQDI-CFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sI-aFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.+.++ .++ ...+..+ +++.+.-+++.++.+....||.++..++.
T Consensus 327 -~~~~l-~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 327 -ELVDA-AGP-WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp -EEEEC-CSS-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -cEEEe-cCC-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 34444 232 2346666 55444444555667777778877654444
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-05 Score=76.41 Aligned_cols=99 Identities=7% Similarity=-0.015 Sum_probs=72.8
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.++.|.+||.. ++.+..+..+. ....+.+.++|.+|++++.+++ |..||.. +|. .+++
T Consensus 144 ~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~-------tG~------------~~w~ 201 (276)
T 3no2_A 144 ATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHC-FVQLNLE-------SNR------------IVRR 201 (276)
T ss_dssp TTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSE-EEEECTT-------TCC------------EEEE
T ss_pred CCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCe-EEEEeCc-------CCc------------EEEE
Confidence 57899999998 89998888754 4456788999999998887776 7888854 453 6777
Q ss_pred Eeec----CCcCcEEEEEEccCCCEEEEEeCC--------CeEEEEEcCCCCC
Q 046828 443 LHRG----MTSAVIQDICFSHYSQWIAIVSSR--------GTCHIFVLTPFGG 483 (627)
Q Consensus 443 l~rG----~t~a~I~sIaFSpDg~~Las~S~d--------gTvhIw~i~~~gg 483 (627)
+.+. .....+..++..+||..+++.+.- +..++|++++.+.
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~ 254 (276)
T 3no2_A 202 VNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK 254 (276)
T ss_dssp EEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB
T ss_pred ecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCC
Confidence 7532 122348899999999998887521 3558899887543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.3e-05 Score=77.17 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=48.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC----cCcEEEEEEccCC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT----SAVIQDICFSHYS 461 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t----~a~I~sIaFSpDg 461 (627)
..+..|+|+++|.++++...++. |.+||.. +. .+..+..... ...+.+++|++|+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~~--------g~------------~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGR-VLVFNKR--------GY------------PIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTE-EEEECTT--------SC------------EEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CCCCceEECCCCCEEEEEcCCCE-EEEECCC--------CC------------EEEEEEcCCCccccccCcceEEECCCC
Confidence 35788999999999988877776 7899853 21 2333321110 0147899999999
Q ss_pred CEEEEEeCCC----eEEEEEcC
Q 046828 462 QWIAIVSSRG----TCHIFVLT 479 (627)
Q Consensus 462 ~~Las~S~dg----TvhIw~i~ 479 (627)
+.|.+++.++ .-.||.++
T Consensus 292 ~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 292 NQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp CEEEEEEECGGGTCCEEEEEEE
T ss_pred CEEEEEeCccCCCCCceEEEEe
Confidence 8888777764 24455443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=0.0001 Score=82.88 Aligned_cols=57 Identities=23% Similarity=0.168 Sum_probs=47.6
Q ss_pred cEEEEEECC--CCceEEEEecCCeEEEEEec----C--cEEEEE--eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLR--SHNYVHVLRFRSTVYMVRCS----P--RIVAVG--LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~--t~~~V~tL~f~s~V~sV~~s----~--~~LaV~--~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.+||+. +++.+.++.-....+.|+++ + ++|.|+ ..++|.|||..|++.+.++..
T Consensus 218 g~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 218 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence 569999996 99999999877777899999 3 677666 357899999999999888764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-05 Score=79.25 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCCeEEEEECCCCeEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIVSRSVISQFR--AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.++.|.+||.. ++.+..+. .+...+..|+|+|+|+++++.+.++. |++||.. |. .+
T Consensus 140 ~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~--------g~------------~~ 197 (286)
T 1q7f_A 140 KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNYE--------GQ------------YL 197 (286)
T ss_dssp TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEETT--------CC------------EE
T ss_pred CCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcCC--------CC------------EE
Confidence 35678888864 45555554 45567899999999998888777776 8999963 21 33
Q ss_pred EEEee-cCCcCcEEEEEEccCCCEEEEEeCCC-eEEEEEc
Q 046828 441 YKLHR-GMTSAVIQDICFSHYSQWIAIVSSRG-TCHIFVL 478 (627)
Q Consensus 441 ~~l~r-G~t~a~I~sIaFSpDg~~Las~S~dg-TvhIw~i 478 (627)
..+.. |. ...+..|+|++||+++++...++ +|++|+.
T Consensus 198 ~~~~~~g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 198 RQIGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp EEESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred EEEccCCc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 33321 21 13489999999999888888776 9999984
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-05 Score=87.23 Aligned_cols=176 Identities=10% Similarity=0.033 Sum_probs=121.9
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-CCeEEEEeCC--CCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-AAQIYCFDAL--TLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~--t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
++|.++|+.+++.+.++.....+..+.+++ ++|.|+. ++.|.+||+. +++.+.++....
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---------------- 240 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---------------- 240 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS----------------
T ss_pred CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC----------------
Confidence 679999999999999999877788999997 6666665 5689999996 888776664311
Q ss_pred ceeeEcCceEEEcC----CCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 255 GPMAVGPRWLAYAS----NNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 255 ~~iAl~~r~LAy~~----~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+|+.+|+.. +... -.+..
T Consensus 241 -----~P~~ia~s~~~~pDGk~----------------------------------------------------l~v~n- 262 (567)
T 1qks_A 241 -----EARSIETSKMEGWEDKY----------------------------------------------------AIAGA- 262 (567)
T ss_dssp -----EEEEEEECCSTTCTTTE----------------------------------------------------EEEEE-
T ss_pred -----CCceeEEccccCCCCCE----------------------------------------------------EEEEE-
Confidence 235666652 2110 00111
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc----------CCC-CeEEEEECCCCCE
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA----------HTS-PISALCFDRSGTL 399 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a----------H~~-~Is~laFspdG~l 399 (627)
..++.|.|+|..+.+++..+.. |.. .+..+.+++++..
T Consensus 263 -------------------------------~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 263 -------------------------------YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp -------------------------------EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred -------------------------------ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence 2457899999999998887763 223 5889999999776
Q ss_pred EEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEE
Q 046828 400 LVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFV 477 (627)
Q Consensus 400 LaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~ 477 (627)
++..-. .|+ |.++|.... . ...+..+..| ....++.|+||+++|+++. .+++|.++|
T Consensus 312 ~vv~~~~~g~-v~~vd~~~~-------~----------~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 312 FIVNVKETGK-ILLVDYTDL-------N----------NLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVID 370 (567)
T ss_dssp EEEEETTTTE-EEEEETTCS-------S----------EEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred EEEEecCCCe-EEEEecCCC-------c----------cceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEE
Confidence 555544 455 788887511 0 0123333222 2378999999999988766 578999999
Q ss_pred cCCC
Q 046828 478 LTPF 481 (627)
Q Consensus 478 i~~~ 481 (627)
+...
T Consensus 371 ~~t~ 374 (567)
T 1qks_A 371 TKEG 374 (567)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9854
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=81.94 Aligned_cols=169 Identities=8% Similarity=0.021 Sum_probs=111.3
Q ss_pred CcEEEEEECCCCceEEEEecCC--eEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS--TVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s--~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
++.|.+||.++|+.+.++..+. .+.++.+.+ ++|+ +.++.|++||. +++.++++...... ..
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~------------~~ 79 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC------------EM 79 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC------------EE
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc------------cc
Confidence 3789999999999999998764 688888876 6666 66778999999 89998888652110 01
Q ss_pred ceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
..+++. ++.|....
T Consensus 80 ~~~~~~~dG~~lv~~~---------------------------------------------------------------- 95 (276)
T 3no2_A 80 QTARILPDGNALVAWC---------------------------------------------------------------- 95 (276)
T ss_dssp EEEEECTTSCEEEEEE----------------------------------------------------------------
T ss_pred cccEECCCCCEEEEec----------------------------------------------------------------
Confidence 111110 11111100
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec------cCCCCeEEEEECCCCCEEEEEeCC
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR------AHTSPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~------aH~~~Is~laFspdG~lLaTaS~d 406 (627)
..++.|..+|. +++.+..+. .+..+...+++.++|.+|++.+.+
T Consensus 96 -----------------------------~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~ 145 (276)
T 3no2_A 96 -----------------------------GHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT 145 (276)
T ss_dssp -----------------------------STTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT
T ss_pred -----------------------------CCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC
Confidence 01233444443 334444433 122245566899999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
++ |.+||.. | ..++++.++ ..+.++.+.++++.|++++.+++|..|+..
T Consensus 146 ~~-v~~~d~~--------G------------~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 146 SE-VREIAPN--------G------------QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp TE-EEEECTT--------S------------CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CE-EEEECCC--------C------------CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 87 7899963 3 267777554 236778899999999999888887777654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.41 E-value=3.8e-05 Score=80.82 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=46.2
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~ 236 (627)
+++|.+||..+++.+.++.-...- .|++++ ++|.++. ++.|.+||+.+++.+.++..
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 468999999999999998855433 899997 6777764 34699999999999888864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00065 Score=72.09 Aligned_cols=98 Identities=11% Similarity=0.109 Sum_probs=64.0
Q ss_pred CCCeEEEEECCCC--eEEEEeccC----------CCCeEEEEECCCCCEEEEEeCC---------CCEEEEEeCCCCCCC
Q 046828 363 IAGMVVVKDIVSR--SVISQFRAH----------TSPISALCFDRSGTLLVTASIH---------GNNINIFRIMPSSSK 421 (627)
Q Consensus 363 ~dG~V~IwD~~s~--~~l~~~~aH----------~~~Is~laFspdG~lLaTaS~d---------Gt~I~Vwdi~p~~~~ 421 (627)
..+.|.+.|+.+. +.+..+.-. ......++|+|||+.|..+..+ +..|.|+|+.
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~----- 306 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL----- 306 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC-----
Confidence 4678999998765 223333211 1224558899999988877542 1237888875
Q ss_pred CCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC-EEEEEe-CCCeEEEEEcCCCC
Q 046828 422 GRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ-WIAIVS-SRGTCHIFVLTPFG 482 (627)
Q Consensus 422 ~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~-~Las~S-~dgTvhIw~i~~~g 482 (627)
++ ..+.++.-|. ....|+|+|||+ .|.++. .+++|.|||+....
T Consensus 307 --t~------------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 307 --VG------------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred --CC------------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 22 1334443332 368999999999 666666 48999999987654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00027 Score=70.80 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=64.2
Q ss_pred CCeEEEEECC-CCe-----EEEEeccCC-CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 364 AGMVVVKDIV-SRS-----VISQFRAHT-SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 364 dG~V~IwD~~-s~~-----~l~~~~aH~-~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
++.|.+||+. +++ ....+..+. ..+..|+|+++|.++++...++. |.+||.. +|..
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-i~~~d~~-------~g~~--------- 259 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPD-------GGQP--------- 259 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTT-------CBSC---------
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE-EEEEcCC-------CCcE---------
Confidence 4667777765 333 334455454 56788999999999998877775 7889863 1210
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPF 481 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~ 481 (627)
...+.+ . ...+.+++|++|+++|.+++ .++.|..|++...
T Consensus 260 -~~~~~~---~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 260 -KMRIRC---P-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp -SEEEEC---S-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred -eEEEeC---C-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 122221 1 13589999999999666554 5689999998753
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.7e-05 Score=86.39 Aligned_cols=99 Identities=5% Similarity=-0.073 Sum_probs=64.9
Q ss_pred CCeEEEEECCC------Ce-EEEEeccCCCCeEEEEECCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCCCCccccCC
Q 046828 364 AGMVVVKDIVS------RS-VISQFRAHTSPISALCFDRSGTLLVTASIHGN---NINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 364 dG~V~IwD~~s------~~-~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt---~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
+..|.+||+.+ +. .+..+..|...+.. .|+|+|..|+..+.++. .|.+||+. ++..
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~-------~~~~------ 323 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT-------DPEE------ 323 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT-------SCCG------
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC-------CCCc------
Confidence 45788898876 42 35566667666655 48999998887776432 36778874 1110
Q ss_pred CCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 434 TSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.....+........|.+++|+++++.+++...+++.+||.++.
T Consensus 324 ----~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 324 ----SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp ----GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred ----ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 0112232222223588999998888899999999887776664
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00011 Score=72.20 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=67.6
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
++.|.+||............+...+..|+++++|.++++...++. |.+|+.. +. ......
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~--------~~-----------~~~~~~ 229 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAG--------ST-----------TSTVLP 229 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTT--------CS-----------CCEECC
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCC--------CC-----------cceeec
Confidence 457888888776554433444467899999999988888777776 7889864 11 011111
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+. ..+.+|+|++||+.+++...+++|++|++..
T Consensus 230 ~~~~--~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 230 FTGL--NTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CCSC--SCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred cCCC--CCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 1121 3489999999999888888999999999865
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00063 Score=72.94 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=45.7
Q ss_pred cEEEEEECCCCceEEEEecCC--------eEEEEEecC--cEEEEEe---CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS--------TVYMVRCSP--RIVAVGL---AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s--------~V~sV~~s~--~~LaV~~---~~~I~i~D~~t~e~~~tl~~ 236 (627)
++|.+||..|++.+.++.... .-..+.+++ ++|.|+. ++.|.++|+.+++.+.++..
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 679999999999999997542 356688887 6666663 46899999999999888843
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00029 Score=71.58 Aligned_cols=100 Identities=12% Similarity=0.124 Sum_probs=59.8
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTA-SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTa-S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.|..+|..+++... +..+...+..++|+|||+.|..+ +.++. |.+||+... |.... .....+..
T Consensus 161 ~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~------g~~~~-----~~~~~~~~ 227 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDD------GVTIQ-----PFGATIPY 227 (333)
T ss_dssp CEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTT------SSSEE-----EEEEEEEE
T ss_pred CceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCC------CcCcc-----cccceEEE
Confidence 3456666666544332 22333457899999999866554 44555 899997411 11000 00000110
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
-..+. ..+..|+|++||+.+++...++.|.+|+.
T Consensus 228 ~~~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 228 YFTGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp ECCSS--SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ecCCC--CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 01121 25889999999998888888899999986
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.26 E-value=9.4e-06 Score=87.24 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=71.1
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+|.|++||+.+......+..|..+|..+.+.+.. +|.++.+|+ +.+||+. .+. . ..
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~-------~~~------------~-~~ 160 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLR-------TKS------------T-KQ 160 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETT-------TCC------------E-EE
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEcc-------CCc------------c-cc
Confidence 45789999998887777788888899998887763 888999998 7999996 221 2 12
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+. ..|.+++|||+| ++++..||++++|+.+...
T Consensus 161 ~~-----~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 161 LA-----QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp EE-----ESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred cc-----CCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence 21 249999999999 7889999999999765433
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.3e-05 Score=79.64 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=62.9
Q ss_pred CCCeEEEEECCCCeEEEEeccC----------CCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 363 IAGMVVVKDIVSRSVISQFRAH----------TSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH----------~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
.++.|++|| .+++.+..+... -.....|+|+|+ |.++++...+++ |++||.. +|.
T Consensus 164 ~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~-------~G~----- 229 (329)
T 3fvz_A 164 CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTD-------TKE----- 229 (329)
T ss_dssp SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETT-------TCC-----
T ss_pred CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECC-------CCc-----
Confidence 356788888 456666666432 234789999999 777777777765 8999974 242
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEcc------CCCEEEEEeCCCeEEEEEcCC
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSH------YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSp------Dg~~Las~S~dgTvhIw~i~~ 480 (627)
.+..+........+..++|+| +++..++.+.+.+|++|++..
T Consensus 230 -------~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 230 -------FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp -------EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred -------EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 344443222233588999999 443333334455899999764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00087 Score=73.12 Aligned_cols=58 Identities=10% Similarity=0.077 Sum_probs=45.0
Q ss_pred CcEEEEEECCCCceEEEEecC-C---eEEEEEecC--cEEEEEe--------------------CCeEEEEeCCCCceeE
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR-S---TVYMVRCSP--RIVAVGL--------------------AAQIYCFDALTLESKF 232 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~-s---~V~sV~~s~--~~LaV~~--------------------~~~I~i~D~~t~e~~~ 232 (627)
++.|.++|.+|.+.+.+++-. . --|++.+++ ++++++. .++|++||+.+++.+.
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 478999999999999999733 2 246677776 6677764 5789999999988777
Q ss_pred EEEc
Q 046828 233 SVLT 236 (627)
Q Consensus 233 tl~~ 236 (627)
++..
T Consensus 243 tI~v 246 (462)
T 2ece_A 243 SLTL 246 (462)
T ss_dssp EEES
T ss_pred EEec
Confidence 7643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00012 Score=83.68 Aligned_cols=97 Identities=9% Similarity=-0.052 Sum_probs=58.4
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI---HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~---dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.|.+||..+++ +..+..|...+....+ ++|.+++.... +++ |.+||+. ++.. . ....
T Consensus 253 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~-------~~~~--------~--~~~~ 312 (695)
T 2bkl_A 253 DVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPA-------KPAR--------A--SWKE 312 (695)
T ss_dssp EEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTT-------BCSG--------G--GCEE
T ss_pred EEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCC-------CCCc--------c--CCeE
Confidence 46666665543 3344555555666666 66765454442 344 6788874 1210 0 0122
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
+........|.+++|+ +++.+++...+++.+||.++..++
T Consensus 313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 3222223458999998 788999999999999998875444
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00029 Score=81.02 Aligned_cols=96 Identities=6% Similarity=-0.039 Sum_probs=64.5
Q ss_pred CCeEEEEECCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+.|.+||+.++ +....+..+...+..++|+ ++.++++...+|. .+||.+... |. .+.
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g~------------~~~ 399 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD------GK------------PAG 399 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT------SC------------EEE
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------CC------------cee
Confidence 567888998874 3444455555667788888 7788999999987 577765421 21 333
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeC----CCeEEEEEcCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSS----RGTCHIFVLTP 480 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~----dgTvhIw~i~~ 480 (627)
++. ......|..++|+||++.|+.... .+++++|++..
T Consensus 400 ~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 400 AVS-LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp ECB-CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred ecc-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 342 222345899999999987774432 47889998864
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00023 Score=71.45 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=59.9
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce-eEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH-VHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~-~~l~~l 443 (627)
+.|..+|.. ++ +..+..+......++|+|||++|++.+.+++ |.+|++.. .|. . .....+
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~-i~~~~~~~------~g~----------~~~~~~~~ 213 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA-THRYCLNA------RGE----------TEYQGVHF 213 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTE-EEEEEECS------SSC----------EEEEEEEE
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCe-EEEEEECC------CCc----------CcCCCeEe
Confidence 456666665 33 3445566667899999999999966666665 89999851 121 0 011122
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.. ....+..|+|++||++.++. ++.|.+|+.+
T Consensus 214 -~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 214 -TV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp -CC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred -eC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 21 22346789999999966665 8899999864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00017 Score=82.22 Aligned_cols=97 Identities=6% Similarity=-0.089 Sum_probs=66.2
Q ss_pred CCCeEEEEECCCCeE---EEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIVSRSV---ISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~---l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.++.|.+||+.+++. ...+..+ ...|..++|+ ++.++++...+|+ .+||.+... |.
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g~------------ 352 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLK------GK------------ 352 (695)
T ss_dssp TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETT------CC------------
T ss_pred CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------CC------------
Confidence 457899999987653 3333333 4568889998 8889999999997 688876421 21
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeC----CCeEEEEEcCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSS----RGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~----dgTvhIw~i~~ 480 (627)
.+.++ .......|..++|+||++.|+.... .++|++|++..
T Consensus 353 ~~~~l-~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 353 PVRTV-QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp EEEEC-CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred eeEEe-cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 33333 2222345888999999988874433 47899999864
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00077 Score=77.54 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=64.0
Q ss_pred CCeEEEEECCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGN---NINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt---~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
...|.+||+.++ +....+..+...+.... +|+|..|+..+.++. .|.+||+. .+. .
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~-------~~~-----------~ 353 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLS-------GST-----------P 353 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECS-------SSS-----------C
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCC-------CCc-----------c
Confidence 457889998876 31455555655555553 499999988876432 26777764 110 0
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
...++..+.. ..|.+++|+ +++.+++...+++.+||.++..++
T Consensus 354 ~~~~l~~~~~-~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 354 RFDTVVPESK-DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp EEEEEECCCS-SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred ccEEEecCCC-CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 2233333332 357888998 667888899999999998875444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.02 E-value=0.003 Score=63.78 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=55.9
Q ss_pred CCeEEEEEC--CCCe-----EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 364 AGMVVVKDI--VSRS-----VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 364 dG~V~IwD~--~s~~-----~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.+.|.+||+ .+++ .+..+..+......|+++++|.+.++....+. |.+||.. +|.
T Consensus 170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~-------tG~---------- 231 (297)
T 3g4e_A 170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPV-------TGK---------- 231 (297)
T ss_dssp GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTT-------TCC----------
T ss_pred CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCC-------Cce----------
Confidence 345666665 3332 23344444456789999999998888777665 7888853 342
Q ss_pred eeEEEEEeecCCcCcEEEEEEc-cCCCEEEEEeCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFS-HYSQWIAIVSSR 470 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFS-pDg~~Las~S~d 470 (627)
.+..+.-. ...+.+++|+ ||++.|.+++.+
T Consensus 232 --~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 232 --RLQTVKLP--VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp --EEEEEECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred --EEEEEECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence 34444322 2358999999 999998887764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0063 Score=62.49 Aligned_cols=85 Identities=11% Similarity=0.124 Sum_probs=53.3
Q ss_pred CCeEEEEECC--CC------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 364 AGMVVVKDIV--SR------SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 364 dG~V~IwD~~--s~------~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
.+.|.+||+. ++ +.+..+..+...+..++++++|.+.++....+. |.+||.. |.
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~~--------g~--------- 261 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDTD--------GN--------- 261 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECTT--------CC---------
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECCC--------CC---------
Confidence 3456666653 33 223334334445678999999998887766665 7888752 21
Q ss_pred ceeEEEEEeecCCcCcEEEEEEc-cCCCEEEEEeCCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFS-HYSQWIAIVSSRG 471 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFS-pDg~~Las~S~dg 471 (627)
.+..+.- ....+.+++|+ +|++.|.+++.++
T Consensus 262 ---~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 262 ---HIARYEV--PGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ---EEEEEEC--SCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ---EEEEEEC--CCCCcEEEEEecCCCCEEEEEecCC
Confidence 3333321 12359999999 9998887776554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.004 Score=66.72 Aligned_cols=71 Identities=13% Similarity=0.227 Sum_probs=49.0
Q ss_pred CeEEEEECCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC--------------CcCc
Q 046828 387 PISALCFDRSGTLLVTAS-IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM--------------TSAV 451 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS-~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~--------------t~a~ 451 (627)
....|+|+|+|.++++-+ .+ +.|++|++. +| .+..+ .|. .-..
T Consensus 324 ~P~gia~d~dG~lyvad~~~~-~~I~~~~~~-------~G-------------~v~~~-~g~~~~~g~~~g~~~~~~~~~ 381 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKG-YCLRKLDIL-------DG-------------YVSTV-AGQVDVASQIDGTPLEATFNY 381 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTT-CEEEEEETT-------TT-------------EEEEE-EECTTCBSCCCBSTTTCCBSS
T ss_pred CCeEEEEeCCCCEEEEeCCCC-CEEEEEECC-------CC-------------EEEEE-eCCCCCCCcCCCChhceEeCC
Confidence 468899999999666655 44 458999963 23 12222 111 0123
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
...|++++|+..+++-...++|+.+.++
T Consensus 382 P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 382 PYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred ceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 8999999999888888888899888763
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0018 Score=65.55 Aligned_cols=51 Identities=6% Similarity=-0.009 Sum_probs=40.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC-cEEEEEeCCeEEEEeCCCCcee
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-RIVAVGLAAQIYCFDALTLESK 231 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-~~LaV~~~~~I~i~D~~t~e~~ 231 (627)
.+|..||..+++. ..+.+...+..+.+.+ ..|.++....|++||..+++..
T Consensus 35 ~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 35 KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAV 86 (297)
T ss_dssp TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEE
T ss_pred CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEE
Confidence 6799999998875 5677788899999986 2366667889999999987643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0037 Score=63.54 Aligned_cols=175 Identities=13% Similarity=0.103 Sum_probs=112.5
Q ss_pred cEEEEEECCCCceEEEEecCC--eEEEEEecCcEEEEEe--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS--TVYMVRCSPRIVAVGL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s--~V~sV~~s~~~LaV~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
.+|+++|++|++.++++.... -...+.+..+.|.++. +++|.+||+.|++.+.++..- .++ |
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-------g------ 109 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-------G------ 109 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS-------C------
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC-------e------
Confidence 679999999999999998654 2335666676666664 568999999999988877432 110 0
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
+. |++-+. + + | +
T Consensus 110 -~g-----lt~Dg~--------~-------------------------------------l-------~--v-------- 121 (266)
T 2iwa_A 110 -WG-----LATDGK--------I-------------------------------------L-------Y--G-------- 121 (266)
T ss_dssp -CE-----EEECSS--------S-------------------------------------E-------E--E--------
T ss_pred -EE-----EEECCC--------E-------------------------------------E-------E--E--------
Confidence 11 111110 0 0 0 0
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC--CC---CeEEEEECCCCCEEEEEeCCCCEE
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH--TS---PISALCFDRSGTLLVTASIHGNNI 410 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH--~~---~Is~laFspdG~lLaTaS~dGt~I 410 (627)
+..++.|.++|..+.+.+..+.-- .. .+..|.|. +|++.+..-.+++ |
T Consensus 122 -------------------------s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~-V 174 (266)
T 2iwa_A 122 -------------------------SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC-I 174 (266)
T ss_dssp -------------------------ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-E
T ss_pred -------------------------ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe-E
Confidence 113578999999999888887732 22 36788888 8876666545554 7
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC----------CcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM----------TSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~----------t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
.+.|.. +|. ....+.+. |. .....+.|+|+||++.|.++. ..+++.+.++.
T Consensus 175 ~vID~~-------tg~----------V~~~I~~~-g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 175 ARISAK-------DGT----------LLGWILLP-NLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEETT-------TCC----------EEEEEECH-HHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEEECC-------CCc----------EEEEEECC-CcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 888875 332 12233331 21 113479999999998766655 57788888887
Q ss_pred CC
Q 046828 480 PF 481 (627)
Q Consensus 480 ~~ 481 (627)
+.
T Consensus 237 ~~ 238 (266)
T 2iwa_A 237 LV 238 (266)
T ss_dssp EC
T ss_pred cc
Confidence 64
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00076 Score=73.25 Aligned_cols=56 Identities=9% Similarity=-0.074 Sum_probs=45.2
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~ 236 (627)
++|.++|+.+++.+.++.....- .|.+++ +.|.|+. ++.|.++|+.+++.+.++..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 68999999999999999854422 899997 5665553 45799999999999888753
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0011 Score=70.43 Aligned_cols=54 Identities=7% Similarity=-0.096 Sum_probs=45.1
Q ss_pred EEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEc
Q 046828 181 AVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~ 236 (627)
+|.++|+.+++.+.++... .+ .+.+++ +.|.|+. ++.|.+||+.|++.+.++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 7999999999999999843 35 799987 6676664 45799999999999999864
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.032 Score=54.68 Aligned_cols=92 Identities=10% Similarity=-0.013 Sum_probs=61.8
Q ss_pred CCeEEEEECCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVISQ-FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~-~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.|.+||. +++.... +..+...+..|+++++|++.++....+. |.+||.. +. ...+.
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~~--------g~-----------~~~~~ 219 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITTS--------GE-----------ITEFK 219 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECTT--------CC-----------EEEEE
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECCC--------Cc-----------EEEEE
Confidence 456777887 5544332 3344566889999999998887766665 7888852 21 12222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+.. ....+.+|++++||+..++...++.|.+|+.
T Consensus 220 ~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 220 IPT--PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CSS--TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCC--CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 221 1235899999999997766667889999986
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0037 Score=63.39 Aligned_cols=57 Identities=7% Similarity=0.018 Sum_probs=45.3
Q ss_pred cEEEEEECCCCceEEEEecCCeEEE--EEecCcEEEEEe--CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYM--VRCSPRIVAVGL--AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~s--V~~s~~~LaV~~--~~~I~i~D~~t~e~~~tl~~ 236 (627)
..|+.+|++|++.+.++......+. |.+..+.|-+.. ++++++||+.|++.+.++..
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~ 125 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY 125 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence 5799999999999999998776544 555565665554 67899999999999888753
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.1e-05 Score=85.36 Aligned_cols=91 Identities=9% Similarity=-0.032 Sum_probs=45.9
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..+|.|..||..+++.+..+..+. ...++|++..|++++.+|+ |+.||.. +|. .++
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~-------tG~------------~~W 154 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTK-------TRE------------LRW 154 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSS-------SSS------------CCC
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECC-------CCC------------EEE
Confidence 357889999999999888887654 2457789999999999987 7899975 342 222
Q ss_pred EEeecCCcCcEEEEEEccCC---CEEEEEeCCCeEEEEEcCC
Q 046828 442 KLHRGMTSAVIQDICFSHYS---QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg---~~Las~S~dgTvhIw~i~~ 480 (627)
++..+ .....+++.|. ..+++++.+|+++.|+...
T Consensus 155 ~~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 155 NATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp EEEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred eEecc----cccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 22111 01223344442 5677788999999999864
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00076 Score=66.05 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=61.6
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
++.|.+||..+.........+...+..|+|+|+|+++++...++. |.+||.. .+. .....
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~-------~~~------------~~~~~ 187 (270)
T 1rwi_B 128 NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAE-------SNN------------QVVLP 187 (270)
T ss_dssp GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEECTT-------TCC------------EEECC
T ss_pred CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEEecC-------CCc------------eEeec
Confidence 456667766554433322333346788999999998887766665 7899864 110 11111
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
..+. ..+.+|++++||+.+++...++.|.+|+..
T Consensus 188 ~~~~--~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 188 FTDI--TAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp CSSC--CSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred ccCC--CCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 1121 348999999999887777778899999864
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0076 Score=68.81 Aligned_cols=94 Identities=9% Similarity=0.027 Sum_probs=62.2
Q ss_pred CCeEEEEECCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 364 AGMVVVKDIVSRSV--ISQFRAHTSPISALCFDRSGTLLVTASIH-GN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 364 dG~V~IwD~~s~~~--l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+.|.++|+.++.. ...+..|...+. .|+++|..|+....+ |. .|++|++. |. .
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--------g~------------~ 361 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--------GK------------R 361 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--------SC------------E
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--------CC------------e
Confidence 46788888887643 345666766654 899999988776654 42 36777764 21 2
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCC----CeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSR----GTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d----gTvhIw~i~~ 480 (627)
..++.-. ....|..+++++|++.|+....+ ++++.|++..
T Consensus 362 ~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 362 VREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred eEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 3333221 12357888999999988876655 7888888754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0036 Score=63.65 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=44.2
Q ss_pred cEEEEEECCCCceEEEEecCCeEEE--EEecCcEEEEEe--CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYM--VRCSPRIVAVGL--AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~s--V~~s~~~LaV~~--~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|+.+|++|++.+.++ ++...+. |.+..+.|-+.. ++++++||+.|++.+.++..
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 45999999999999999 8776544 666665555544 67899999999999888753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0031 Score=72.21 Aligned_cols=47 Identities=2% Similarity=-0.154 Sum_probs=33.5
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
.++++..+. .+....++.++..+++++.||++++|+...-...-.+.
T Consensus 469 ~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 469 AAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 566654442 24556788899999999999999999998654443333
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0068 Score=64.88 Aligned_cols=96 Identities=5% Similarity=-0.018 Sum_probs=57.6
Q ss_pred CCeEEEEECCCCeEEEE----eccCCC--CeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 364 AGMVVVKDIVSRSVISQ----FRAHTS--PISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~----~~aH~~--~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
++.|..||..++..... ...+.. |.+.|+|+|+ |.++++-..++ .|++|+.. |.
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~-~I~~~~~~--------g~---------- 299 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS-SVYKITPD--------GE---------- 299 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT-EEEEECTT--------CC----------
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC-EEEEEecC--------CC----------
Confidence 56788888877653222 222222 2249999995 66665555554 47888753 21
Q ss_pred eeEEEEEe---ecCC--------cCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 437 HVHLYKLH---RGMT--------SAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 437 ~~~l~~l~---rG~t--------~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
.....-. .|.. -.....|+|++||+++++-+ ..++|++|++.
T Consensus 300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 0111000 0100 12378999999999777777 78899999863
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0039 Score=67.99 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCC--e-EEEEECCCCCEEEEEe------------------CCCCEEEEEeCCCCCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSP--I-SALCFDRSGTLLVTAS------------------IHGNNINIFRIMPSSS 420 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~--I-s~laFspdG~lLaTaS------------------~dGt~I~Vwdi~p~~~ 420 (627)
...|.|.++|.++.+.+.++..-..+ + ..+.|+|+++.++++. ..+..|.|||+.
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~---- 236 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR---- 236 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT----
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC----
Confidence 45789999999999999999743222 2 3478899999999886 346679999986
Q ss_pred CCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE--ccCCCEEEEEe------CCCeEEEEEcCC
Q 046828 421 KGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF--SHYSQWIAIVS------SRGTCHIFVLTP 480 (627)
Q Consensus 421 ~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF--SpDg~~Las~S------~dgTvhIw~i~~ 480 (627)
++ ..+.++.-|........|.| +||++++.+++ .+++|.+|..+.
T Consensus 237 ---~~------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 237 ---KR------------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp ---TT------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ---CC------------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 22 24445544422223456656 99999999888 567998887764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.015 Score=61.38 Aligned_cols=55 Identities=9% Similarity=-0.065 Sum_probs=44.2
Q ss_pred EEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEc
Q 046828 181 AVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~ 236 (627)
+|.+||+.+++.+.++.-...- .+.+++ +.|.|+. ++.|.+||+.+++.+.++..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~ 115 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL 115 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC
Confidence 7999999999999988754433 899997 6777764 45799999999998877753
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.43 E-value=0.011 Score=58.84 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=60.3
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEEC----CCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFD----RSGTLLVTAS-IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFs----pdG~lLaTaS-~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+.|..||.. ++.. .+..+......++|+ |+|+.|..+. .++. |.+||+... |.. ...
T Consensus 152 ~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~------g~~--------~~~ 214 (314)
T 1pjx_A 152 FGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGP------AKI--------ENK 214 (314)
T ss_dssp CEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEET------TEE--------EEE
T ss_pred CCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCC------Ccc--------ccc
Confidence 3566677765 4433 233334456889999 9997665554 4554 899987411 110 000
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
..+....+.....+..|+|++||+++++...++.|.+|+.+
T Consensus 215 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 11111122210347899999999988888889999999865
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0034 Score=64.96 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=42.8
Q ss_pred cEEEEEECCCCceEEEEecCC-------eEEEEEecC--cEEEEE-----eCCeEEEEeCCCCceeEEEEcC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS-------TVYMVRCSP--RIVAVG-----LAAQIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s-------~V~sV~~s~--~~LaV~-----~~~~I~i~D~~t~e~~~tl~~~ 237 (627)
.+|.+||+++++.++++.++. .+.+|++.+ ..+.++ ....|++||+.+++....+.+|
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 579999999999999988752 357888874 355444 2457999999998866555443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.01 Score=60.21 Aligned_cols=57 Identities=5% Similarity=-0.119 Sum_probs=47.1
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
+++.+||.+|.+.+.++.....=+.+....+.|.++. +++|+++|..|++.+.++.-
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 6799999999999999998765566666677776664 66899999999998888754
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.1 Score=53.82 Aligned_cols=91 Identities=12% Similarity=0.190 Sum_probs=58.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+|.|..+|..+++.+..... .....+.. ++..|..++.+|. +..||.. +|. .+++
T Consensus 247 ~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~-------tG~------------~~w~ 302 (376)
T 3q7m_A 247 YNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDR-VMALTID-------GGV------------TLWT 302 (376)
T ss_dssp TTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCC-EEEEETT-------TCC------------EEEE
T ss_pred cCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCe-EEEEECC-------CCc------------EEEe
Confidence 567888999999887766553 33444444 3566777778887 6888975 442 4555
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.... ....+..... .+..|.+++.+|.+++|+...
T Consensus 303 ~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 303 QSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp ECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred eccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 4311 1111222222 356788999999999999764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.036 Score=54.30 Aligned_cols=92 Identities=9% Similarity=-0.008 Sum_probs=61.3
Q ss_pred CCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
++.|.+||. +++... .+..+...+..|+++++|++.++...++. |.+||.. +. ...+.
T Consensus 119 ~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~~--------g~-----------~~~~~ 177 (299)
T 2z2n_A 119 GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA-IGRITES--------GD-----------ITEFK 177 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE-EEEECTT--------CC-----------EEEEE
T ss_pred CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE-EEEEcCC--------Cc-----------EEEee
Confidence 456777777 443322 22334567899999999999888766665 6778752 21 12222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+..+ ...+.+|++++|++..++...++.|.+|+.
T Consensus 178 ~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 178 IPTP--ASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp CSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCCC--CCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 2211 234899999999997777767888998886
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00056 Score=73.35 Aligned_cols=98 Identities=10% Similarity=0.000 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI----------HGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~----------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
++.|.++|..+++.+..+..-..| . |+|+|||++|..++. ++ .|.+||.. ++.
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~-~VsviD~~-------t~~------- 120 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTD-YVEVFDPV-------TLL------- 120 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEE-EEEEECTT-------TCC-------
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCC-EEEEEECC-------CCe-------
Confidence 579999999999999999876667 4 999999999988762 33 48999986 221
Q ss_pred CCceeEEEEEeecC-----CcCcEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCCC
Q 046828 434 TSSHVHLYKLHRGM-----TSAVIQDICFSHYSQWIAIVSS--RGTCHIFVLTPFGG 483 (627)
Q Consensus 434 ~~~~~~l~~l~rG~-----t~a~I~sIaFSpDg~~Las~S~--dgTvhIw~i~~~gg 483 (627)
.+.++.-+. ....-..++|+|||++|.++.. +++|.|+|+....-
T Consensus 121 -----v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 121 -----PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp -----EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred -----EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 233332111 1112456899999999999874 68999999987643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.05 Score=54.48 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=44.1
Q ss_pred cEEEEEECCCCceEEEEecCCeEEE--EEecCcEEEEEe--CCeEEEEeCCCCceeEEEE
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYM--VRCSPRIVAVGL--AAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~s--V~~s~~~LaV~~--~~~I~i~D~~t~e~~~tl~ 235 (627)
..|+.+|+++++.+.++..+...+. +.+..+.|-+.. ++++++||+.|++.+.++.
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR 102 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence 5799999999999999998765543 455455555544 6789999999999988875
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.063 Score=54.91 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=57.6
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC-CCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG-SASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g-~~~~~~~~~~~~~~l~~l 443 (627)
+.|..+| +++. ..+..+......++|+|||+.|..+......|.+||+.+. +| .. . ....+..+
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-----~Gl~~------~-~~~~~~~~ 225 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-----TGLPT------G-KAEVFIDS 225 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-----TCCBS------S-CCEEEEEC
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-----cCCcc------c-CceEEEEC
Confidence 4555566 3443 2333333456789999999877666544344899997411 12 10 0 00112222
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
.+. ...+..+++.+||++.++....+.|.+|+.
T Consensus 226 -~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 226 -TGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp -TTS-SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred -CCC-CCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 111 234788999999998777777788888875
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.013 Score=67.00 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=42.2
Q ss_pred cEEEEEECCCCceEEEEecCCe------------EEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEcC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRST------------VYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~------------V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~ 237 (627)
+.|.-+|.+||+.+-+++.... ...+.+...+|.++ .+++|+.+|+.|++.+.+....
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 157 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTF 157 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence 5588899999999988875431 12234445555555 5779999999999999887653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.19 Score=49.01 Aligned_cols=92 Identities=9% Similarity=0.029 Sum_probs=59.1
Q ss_pred CCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.|.++|. +++... .+..+...+..|+++++|.+.++....+. |.+|+.. +. ...+.
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~~--------g~-----------~~~~~ 224 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITTT--------GE-----------ISEYD 224 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECTT--------CC-----------EEEEE
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcCC--------Cc-----------EEEEE
Confidence 456677776 443332 12234456899999999998877666555 7888752 21 12222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+..+ ...+.+|+++++|+..++...++.|.+|+.
T Consensus 225 ~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 225 IPTP--NARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp CSST--TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCC--CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 2111 234899999999996666666788988876
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.042 Score=62.99 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=29.5
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.++++..+. .+..-.++..+..|++++.||+++.||.+.-.
T Consensus 467 ~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 467 AAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred eEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 455554432 13344777888999999999999999987643
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.044 Score=55.44 Aligned_cols=57 Identities=7% Similarity=0.104 Sum_probs=45.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
+++.+||.+|.+.+.++.....=+.+....+.|.++. +++|+++|..|++.+.++.-
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred CEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 6799999999999999998664456666566666654 66899999999998888754
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0083 Score=68.47 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=53.4
Q ss_pred CCeEEEEECCCCe-EEEEeccCCCCeEEEEECCCCCEEEE-EeCCC--CEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 364 AGMVVVKDIVSRS-VISQFRAHTSPISALCFDRSGTLLVT-ASIHG--NNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 364 dG~V~IwD~~s~~-~l~~~~aH~~~Is~laFspdG~lLaT-aS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
...|.++|+.++. ....+..+....... |+++|..|+. ...++ ..|.++|+. .+. ...+.
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~-------~~~--------~~~~~ 321 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA-------NPG--------PAHWR 321 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT-------SCC--------GGGCE
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC-------CCC--------ccccE
Confidence 3578999987763 345566666666555 6666665554 44443 235666764 111 00012
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLT 479 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~ 479 (627)
.+.. +....+ .|++++++|+....++ .|++|+++
T Consensus 322 --~l~~-~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 322 --DLIP-ERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp --EEEC-CCSSCE---EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred --EEec-CCCCEE---EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 2222 222223 8999999998877654 56666654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0012 Score=70.25 Aligned_cols=94 Identities=9% Similarity=-0.054 Sum_probs=69.3
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe---------CCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTAS---------IHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS---------~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.|.|+|..+++.+.+|..-..| .++|+|||++|..+. +++..|.+||+. ++.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~-------T~~---------- 107 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-------TFL---------- 107 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT-------TCC----------
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC-------CCC----------
Confidence 8999999999999999866677 799999999999987 223458999986 232
Q ss_pred eeEEEEEeec-CC----cCcEEEEEEccCCCEEEEEeC--CCeEEE--EEcCC
Q 046828 437 HVHLYKLHRG-MT----SAVIQDICFSHYSQWIAIVSS--RGTCHI--FVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG-~t----~a~I~sIaFSpDg~~Las~S~--dgTvhI--w~i~~ 480 (627)
.+.++.-| .. ......++|||||+||.++.. ..++.+ +|+..
T Consensus 108 --vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 --PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp --EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred --EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 34443222 00 012457899999999999975 467888 87754
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.032 Score=63.93 Aligned_cols=57 Identities=25% Similarity=0.139 Sum_probs=41.0
Q ss_pred cEEEEEECCCCceEEEEecCCeE------------EEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTV------------YMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V------------~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-+|.+||+.+-+++..... ..+.+...+|.++ .+++|+.+|+.|++.+.+...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 45888999999999888654210 1223334555555 477999999999999888764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.4 Score=49.26 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=41.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEE-EEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYM-VRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~s-V~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|..+|.++|+.+...+....+.. ..+....|.++ .++.|+.||+.|++.++....
T Consensus 113 g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 6799999999999988886654321 22334555555 466899999999998877654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.17 Score=50.53 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=46.2
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+++.+||.+|.+.+.++.....=+.+....+.|.++ .+++|+++|..|++.+.++.-
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 679999999999999999876556666666666555 456899999999998888754
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.19 Score=49.12 Aligned_cols=92 Identities=10% Similarity=0.023 Sum_probs=59.0
Q ss_pred CCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
++.|..+|.. ++... .+......+..|+++++|++.++....+. |.+||.. +. ...+.
T Consensus 124 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~~--------g~-----------~~~~~ 182 (300)
T 2qc5_A 124 GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS-IGRITNT--------GK-----------LEEYP 182 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECTT--------CC-----------EEEEE
T ss_pred CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe-EEEECCC--------Cc-----------EEEee
Confidence 3456667666 43322 23334456899999999997777665555 6777752 21 12222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+. + ....+..|++.+|++..++....+.|.+|+.
T Consensus 183 ~~-~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 183 LP-T-NAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp CS-S-TTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CC-C-CCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 21 1 1234899999999987777777788888876
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.079 Score=52.95 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
++.|..+|. +++.+..+......+..+.++++|.+. .++.+|. +..||. . |. .++.+
T Consensus 234 ~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~gg-l~~~d~--~------g~------------~~~~~ 290 (330)
T 3hxj_A 234 DGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIY-FGSYDGH-LYAINP--D------GT------------EKWNF 290 (330)
T ss_dssp TTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEE-EECTTCE-EEEECT--T------SC------------EEEEE
T ss_pred CCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEE-EecCCCC-EEEECC--C------Cc------------EEEEE
Confidence 344555553 344445555444445567778888655 4566765 677773 2 21 34443
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.-+ ...+.++....|++ |.+++.+|.+++...+..
T Consensus 291 ~~~--~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 291 ETG--SWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp ECS--SCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred EcC--CccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 222 23477788888887 456889999999887643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.084 Score=53.51 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=62.1
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.++.|.++|..+.+.+.+|..- .+. ...+++||+.|..+...++ |.++|.. +.. .+.+
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~~-l~viD~~-------t~~------------v~~~ 141 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTSI-LYEIDPH-------TFK------------LIKK 141 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSSE-EEEECTT-------TCC------------EEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCCe-EEEEECC-------CCc------------EEEE
Confidence 5788999999999999999743 121 2446678888887776554 7888864 111 2222
Q ss_pred Ee---ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LH---RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~---rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+. +|.....+..+.|. |++..+..-.+++|.+.|...
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD 181 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence 22 12222237788998 786655555678888888764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0032 Score=68.29 Aligned_cols=97 Identities=8% Similarity=-0.014 Sum_probs=71.7
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI----------HGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~----------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
+.|.++|+.+++.+.++..-..| .|+|+|||++|..+.. ++ .|.|+|.. ++.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~-~VsviD~~-------t~~-------- 160 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTD-YVEVFDPV-------TFL-------- 160 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEE-EEEEECTT-------TCC--------
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCC-EEEEEECC-------CCc--------
Confidence 79999999999999999966677 8999999999988873 33 48999975 221
Q ss_pred CceeEEEEEeec-C----CcCcEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCCC
Q 046828 435 SSHVHLYKLHRG-M----TSAVIQDICFSHYSQWIAIVSS--RGTCHIFVLTPFGG 483 (627)
Q Consensus 435 ~~~~~l~~l~rG-~----t~a~I~sIaFSpDg~~Las~S~--dgTvhIw~i~~~gg 483 (627)
.+.++.-+ . ....-..++|||||++|.++.. +++|.|+|+....-
T Consensus 161 ----vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 161 ----PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp ----EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred ----EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 23333211 0 0012356899999999999874 58999999887543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00023 Score=75.14 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=41.4
Q ss_pred CCCCeEEEEECCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHT------SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~------~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
..+|.|..||.++++.+..++.+. .|+ +. ++..|++++.+|+ |+.||.. +|.
T Consensus 56 s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~----~~-~~~~v~~g~~dg~-v~a~D~~-------tG~--------- 113 (369)
T 2hz6_A 56 PNDGSLYTLGSKNNEGLTKLPFTIPELVQASPC----RS-SDGILYMGKKQDI-WYVIDLL-------TGE--------- 113 (369)
T ss_dssp TTTCCEEEC-----CCSEECSCCHHHHHTTCSC----C------CCCCEEEEE-EEEECCC-------------------
T ss_pred CCCCEEEEEECCCCceeeeeeccCccccccCce----Ee-cCCEEEEEeCCCE-EEEEECC-------CCc---------
Confidence 357889999988887766555431 222 11 3446777888887 7999975 452
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.++++..+. .+.++|++..|++++.+++++.|+...
T Consensus 114 ---~~w~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 114 ---KQQTLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp ----------------------------EEEEEEEEEEECCCSSS
T ss_pred ---EEEEecCCC------cccccccCCEEEEEecCCEEEEEECCC
Confidence 445443221 245678999999999999999998764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.076 Score=60.56 Aligned_cols=57 Identities=21% Similarity=0.049 Sum_probs=40.8
Q ss_pred cEEEEEECCCCceEEEEecCCeE------------EEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTV------------YMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V------------~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-+|.+||+.+-+++..... ..+.+...+|.++ .+++|+.+|+.|++.+.+...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 56888999999999888654211 1223334455555 477999999999999988764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.3 Score=55.61 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=28.4
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+++...+. .+....+...+..|++++.||.+++|+...-
T Consensus 450 ~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 450 AAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp EEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred EEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 455554432 2344566678889999999999999998653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.16 Score=50.97 Aligned_cols=93 Identities=11% Similarity=0.022 Sum_probs=54.8
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-----CEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-----NNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-----t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+.|..+|..+++..... +......++|+|||+.|..+.... ..|.+|++.. +. ..
T Consensus 168 ~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~-------~~----------l~ 228 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD-------GA----------LH 228 (305)
T ss_dssp CEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET-------TE----------EE
T ss_pred CCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC-------CC----------cc
Confidence 356777887666543332 334567899999999888877652 3488898751 10 00
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
....+... .......|++.+||++. +++.+ .|++|+.
T Consensus 229 ~~~~~~~~-~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~ 265 (305)
T 3dr2_A 229 DRRHFASV-PDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECC-SSSCCCSEEECTTSCEE-ECCSS-EEEEECT
T ss_pred CCeEEEEC-CCCCCCeEEECCCCCEE-EecCC-cEEEECC
Confidence 11111111 11235678999999944 44444 4777764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.18 Score=56.44 Aligned_cols=27 Identities=4% Similarity=-0.145 Sum_probs=20.6
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
...+...+..|.+++.||+++.|+...
T Consensus 468 ~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 468 GGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp SBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred ceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 334455667788899999999999865
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.1 Score=58.60 Aligned_cols=105 Identities=8% Similarity=-0.045 Sum_probs=67.7
Q ss_pred CeEEEEECCC--CeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVS--RSV-ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s--~~~-l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
+.|.|.|..+ ++. +..+..-. ...++.|+|||+++..++.....|.|+|+...... ..|. .........
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~-~~~~------l~~~~~v~~ 325 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV-FYEN------ADPRSAVVA 325 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH-HHSC------CCGGGGEEE
T ss_pred CcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc-cccc------cCcccceEE
Confidence 4599999998 555 66665433 34678999999999888876666899998621000 0000 000001233
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
++.-|. .-..++|++||....+.-.+++|-+|+++.
T Consensus 326 ~v~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 326 EPELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CCBCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EcCCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 444443 368899999994444556799999999976
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.38 Score=50.67 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCCeEEEEEC-------CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 363 IAGMVVVKDI-------VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 363 ~dG~V~IwD~-------~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
.+|.+..|++ .+.+.+.+|.-- +.+..+..++....|..+-++ .-|..|+..|.... ++
T Consensus 151 k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~--~~---------- 216 (355)
T 3amr_A 151 KEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGS--NG---------- 216 (355)
T ss_dssp SSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCS--CC----------
T ss_pred CCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCC--Cc----------
Confidence 4477777776 233567777753 467788899988888888887 33444443333210 11
Q ss_pred ceeEEEEEeecCCcCcEEEEEE--ccCCC-EEEEEe-CCCeEEEEEcC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICF--SHYSQ-WIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaF--SpDg~-~Las~S-~dgTvhIw~i~ 479 (627)
..+...--|.-.+.+..|+. .+|++ ||++++ .+.+.+||+..
T Consensus 217 --~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 217 --TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp --EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred --eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 12333222333456899988 66777 777777 67799999996
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.043 Score=56.53 Aligned_cols=107 Identities=11% Similarity=0.139 Sum_probs=62.1
Q ss_pred CCeEEEEECCCCeEEEEeccC------CCCeEEEEECCC-CCEEEEEe---CCCCEEEEEeCCCCCCCCCCCCCcc--cc
Q 046828 364 AGMVVVKDIVSRSVISQFRAH------TSPISALCFDRS-GTLLVTAS---IHGNNINIFRIMPSSSKGRSGSASQ--TY 431 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH------~~~Is~laFspd-G~lLaTaS---~dGt~I~Vwdi~p~~~~~~~g~~~~--~~ 431 (627)
++.|.+||+.+++.+..+..+ ...+..|+|+|+ |.++++-+ .++. |.+||+. . +.... ..
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~-~------g~~~r~~~~ 163 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQ-T------GLAARVLQG 163 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETT-T------CCEEEECTT
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe-EEEEECC-C------CCEEEEecC
Confidence 568999999999877766532 235689999986 55556654 4554 7899975 1 21000 00
Q ss_pred ----CC-CCce----eEEEEEe-ecC---CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 432 ----DW-TSSH----VHLYKLH-RGM---TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 432 ----~~-~~~~----~~l~~l~-rG~---t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.. .... ..++... .|. -...+..|+||||+++|.++...++ +||.++
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 00 0000 0000000 000 0013689999999999999888775 666664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.59 Score=52.34 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=54.6
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.|.-||+.+++.+-.++.+. ++..-.+.-.|.++..++.||. ++.||.. +|. .+++
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~-l~A~D~~-------tG~------------~lW~ 522 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAK-------SGK------------ELWK 522 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETT-------TCC------------EEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCc-EEEEECC-------CCC------------EEEE
Confidence 46899999999999887776442 2221112224667778999997 7999986 553 6777
Q ss_pred EeecCCcCcEE--EEEEccCCC-EEEEEeC
Q 046828 443 LHRGMTSAVIQ--DICFSHYSQ-WIAIVSS 469 (627)
Q Consensus 443 l~rG~t~a~I~--sIaFSpDg~-~Las~S~ 469 (627)
++-+. .|. -+.|..||+ |+++.+.
T Consensus 523 ~~~~~---g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 523 FQTGS---GIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp EECSS---CCCSCCEEEEETTEEEEEEEEC
T ss_pred ecCCC---CcccCceEEEECCEEEEEEEcc
Confidence 75432 233 267778887 5555544
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.12 E-value=8.4 Score=46.73 Aligned_cols=96 Identities=7% Similarity=0.087 Sum_probs=59.7
Q ss_pred CeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
..|+|||+...+.+. .-..+. .|..+...-.|.+++.|+...- |.++...+.. ..+..+
T Consensus 904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~~------------------~~L~~~ 963 (1158)
T 3ei3_A 904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPME------------------GNFEEI 963 (1158)
T ss_dssp TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETTT------------------TEEEEE
T ss_pred CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcCC------------------CeEEEE
Confidence 467778877654333 111121 1333344345788888887754 4554433221 166677
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
-|-..+-.+.++.|=.++ .++.+..+|.++++..++.
T Consensus 964 a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTT
T ss_pred EeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCC
Confidence 665555569999997665 6677999999999998873
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.14 Score=51.49 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=64.3
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..++.|..||.. ++ +..+..+...+..++|+++|+++++...++. |.+|+.. |. ...+.
T Consensus 64 ~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~--------g~----------~~~~~ 122 (305)
T 3dr2_A 64 LVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD--------GQ----------AHLLV 122 (305)
T ss_dssp TTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT--------SC----------EEEEE
T ss_pred CCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC--------CC----------EEEEE
Confidence 356789999984 44 4566666778999999999997776555454 6788753 21 01222
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEE----EeC-----------CCeEEEEEcCCCCCe
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAI----VSS-----------RGTCHIFVLTPFGGE 484 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las----~S~-----------dgTvhIw~i~~~gg~ 484 (627)
....+.....+.+|++++||++.++ ++. .+.-.||.+++.++.
T Consensus 123 ~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 123 GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 2222222223788999999998876 332 124677777764443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=2.4 Score=47.70 Aligned_cols=23 Identities=4% Similarity=-0.142 Sum_probs=18.9
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCC
Q 046828 458 SHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~i~~ 480 (627)
...+..|.+++.||.++.||.+.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTT
T ss_pred EecCCEEEEECCCCeEEEEECCC
Confidence 34677888899999999999875
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.92 Score=44.98 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
+.|..+| .+++.+..+..+...+.++.++++|.+.+. +.+|. +..||. . |. .++++.
T Consensus 195 ~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t~~~g-l~~~~~--~------g~------------~~~~~~ 251 (330)
T 3hxj_A 195 DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT-SLDGH-LYAINP--D------GT------------EKWRFK 251 (330)
T ss_dssp SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE-ETTTE-EEEECT--T------SC------------EEEEEE
T ss_pred CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE-cCCCe-EEEECC--C------CC------------EeEEee
Confidence 6788888 677777777766677999999999987664 44554 566663 2 21 344443
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.+. ..+.++.+.+++ .|.+++.+|.+..|+
T Consensus 252 ~~~--~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 252 TGK--RIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CSS--CCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CCC--CccccceEcCCC-eEEEecCCCCEEEEC
Confidence 321 123445666566 466778888888886
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=2 Score=46.68 Aligned_cols=197 Identities=12% Similarity=0.163 Sum_probs=109.1
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
..++.|+|++++..++.+.-. .+|..=.|-.+- .|+-... +.|.-|++.- .+.+++++++
T Consensus 85 g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT~--taVyHWsi~~----------------~s~P~kvFdR 144 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVTD--NAVYHWSMEG----------------ESQPVKMFDR 144 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEECS--SEEEEEESSS----------------SCCCEEEEEC
T ss_pred CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEcC--CeeEEecccC----------------CCCchhheec
Confidence 468999999999888777754 456666665444 3444333 3589999851 1122567766
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCccccc
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSS-------RGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMIN 516 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~-------dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~ 516 (627)
..-.....|..-.-++|.+|++..+- .|.+.+|.++..- ...+++|... |+
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~---------------------F~ 202 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAAS---------------------FA 202 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEE---------------------EE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeee---------------------eE
Confidence 55555566989999999999996553 4788899987643 3446777432 22
Q ss_pred cCCCCCCCCCCeeeeeeeeeecCCCCccccccccccccCCccCCCccceeeecccccccCCCcccccc-cCcceEEEEcC
Q 046828 517 QPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKV-NDLEHVLVYTP 595 (627)
Q Consensus 517 q~~~~~~~p~~~~l~~~~~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~-~~~~~l~v~~~ 595 (627)
+++++. -+.+.+|-..+.-... |..=.|-.--...+|....+ -...++|-...+.+.-++...+ ++-.=+||++-
T Consensus 203 ~~~~~g-~~~~~~lf~fa~r~~~--g~kLhi~Ei~~~~~~~~~f~-kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 203 QFKMEG-NAEESTLFCFAVRGQA--GGKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEECTT-CSSEEEEEEEEECSTT--CCEEEEEECSCCCTTCCCCC-CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred EEecCC-CCCCceEEEEEEecCC--CcEEEEEEcCCCccCCCCcc-ceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 333321 1233333333321111 11111100000001111122 2455555443332222222222 56667899999
Q ss_pred CCcEEEEEeec
Q 046828 596 SGHVVQYKLLS 606 (627)
Q Consensus 596 ~G~l~~y~l~p 606 (627)
.|+++.|+|+.
T Consensus 279 ~G~i~lyDleT 289 (494)
T 1bpo_A 279 YGYIHLYDLET 289 (494)
T ss_dssp TSEEEEEETTT
T ss_pred CceEEEEeccc
Confidence 99999999863
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.11 Score=59.92 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=55.7
Q ss_pred CCeEEEEECCCC-eEEE-EeccCCCCeEEEEECCCCCEEEEEeCCC--C--EEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 364 AGMVVVKDIVSR-SVIS-QFRAHTSPISALCFDRSGTLLVTASIHG--N--NINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 364 dG~V~IwD~~s~-~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dG--t--~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
...|+++|+.++ +.+. .+.. ....++|+|||+.|+..+.+. . .|.++++. ++. ...
T Consensus 200 ~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg-------t~~--------~~~ 261 (751)
T 2xe4_A 200 VYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG-------KLQ--------SED 261 (751)
T ss_dssp CEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT-------SCG--------GGC
T ss_pred eEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC-------CCc--------hhc
Confidence 346889999887 5321 1111 134678999998888777652 2 24555553 111 001
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLTP 480 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~~ 480 (627)
..+++. .......++.|||||++|+..+.++ .++++++..
T Consensus 262 ~lv~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 262 VCLYEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEEEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEEec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 234432 1222367899999999999877432 355556553
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.05 E-value=8.2 Score=41.91 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=40.8
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEE-ecCcEEEEEeCCeEEEEeCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVR-CSPRIVAVGLAAQIYCFDALT 227 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~-~s~~~LaV~~~~~I~i~D~~t 227 (627)
++++++|+.+.+.+++..+...|.==+ ++++.|+...+..||-|++..
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~ 134 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSS
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccC
Confidence 789999999999999999988654333 367999999999999999864
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=93.65 E-value=6.4 Score=43.85 Aligned_cols=56 Identities=11% Similarity=-0.017 Sum_probs=40.0
Q ss_pred EEEEEECCCCceEEEEecCCeE----------EEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 181 AVRFYSLRSHNYVHVLRFRSTV----------YMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~s~V----------~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
.|.-+|.+||+.+-+++...+. ..+.+....|.++ .+++|+.+|+.|++.+.....
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3888999999999888754321 2223334455555 577999999999999887754
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.3 Score=54.94 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=70.8
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--------------CEEEEEeCCCCCCC-CCCCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--------------NNINIFRIMPSSSK-GRSGS 426 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--------------t~I~Vwdi~p~~~~-~~~g~ 426 (627)
..++.|.++|..+.+.+.++.--. .-.-++++|||+++.+++.+. ..|.|+|+. .... -..|.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~-~~~~~v~~Gk 249 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA-EIEKAIAAGD 249 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH-HHHHHHHHTC
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc-ceeEeccCCC
Confidence 467899999999999999887433 346688999999999999765 336677653 1100 00010
Q ss_pred CccccCCCCceeEEEEEe------------ecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCC
Q 046828 427 ASQTYDWTSSHVHLYKLH------------RGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPF 481 (627)
Q Consensus 427 ~~~~~~~~~~~~~l~~l~------------rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~ 481 (627)
. .+-.. +.+...+ -|. ...++.|||||+++.+++ .+.+|+++++...
T Consensus 250 ~----~~i~~-V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 250 Y----QELNG-VKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp S----EEETT-EEEEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred e----eEECc-EEEEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 0 00000 1222222 222 146799999999988877 5779999999854
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=92.95 E-value=8.6 Score=38.78 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.|.+.|+........+.........|+++|++..|..+.... ..|..+++. |+ ....
T Consensus 98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--------G~------------~~~~ 157 (316)
T 1ijq_A 98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV------------DIYS 157 (316)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC------------CEEE
T ss_pred CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--------CC------------CeEE
Confidence 45677777765433333333334568999999666555554432 236666653 22 1111
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
+... .-.....|+|+++++.|..+. ..++|..++++
T Consensus 158 ~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 158 LVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 2111 112478999999888777665 45688888876
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=9.1 Score=42.42 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=40.3
Q ss_pred cEEEEEEC-CCCceEEEEecCCe--E----------EEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSL-RSHNYVHVLRFRST--V----------YMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl-~t~~~V~tL~f~s~--V----------~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-+|. ++|+.+-+.+.... + ..+.+...+|.++ .+++|+.+|+.|++.+.+...
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 143 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEV 143 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEecC
Confidence 45888999 99999988775431 1 1233344555555 567899999999999887653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=92.13 E-value=8.9 Score=37.02 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=52.7
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC--CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH--GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d--Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+.|.++|+........+.........|+|+|++..|..+... ...|.++++. |.. ....
T Consensus 100 ~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--------g~~----------~~~~ 161 (267)
T 1npe_A 100 LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--------GTN----------RRIL 161 (267)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--------SCC----------CEEE
T ss_pred CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--------CCC----------cEEE
Confidence 3456666665432222222222346889999975555555443 2346777763 210 1111
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
...+. .....|+|++|+++|.++. ..++|.+|++.
T Consensus 162 -~~~~~--~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 162 -AQDNL--GLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp -ECTTC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -EECCC--CCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 11121 2478999999988776555 45788888875
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=8.7 Score=43.06 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=39.0
Q ss_pred cEEEEEEC-CCCceEEEEecCCeE------------EEEEe--cC-c---EEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSL-RSHNYVHVLRFRSTV------------YMVRC--SP-R---IVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl-~t~~~V~tL~f~s~V------------~sV~~--s~-~---~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-+|. ++|+.+-+.+..... ..+.+ .. + +|.++ .+++++.+|+.|++.+.....
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 45888899 999999888754321 12344 22 2 24444 577999999999999877643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.99 E-value=13 Score=38.68 Aligned_cols=93 Identities=8% Similarity=-0.017 Sum_probs=50.7
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.|.+.|+........+.........|+++|++..|..+.... ..|..++.. |.. .... ..
T Consensus 182 ~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~~----------~~~~-~~ 242 (386)
T 3v65_B 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GSG----------RRII-AD 242 (386)
T ss_dssp EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SCS----------CEEE-EC
T ss_pred eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------CCC----------cEEE-EE
Confidence 444445443322222333334568999999766665555443 335666653 210 1111 11
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLT 479 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~ 479 (627)
.+. ..-..|+|+|+++.|..+.. .++|..++++
T Consensus 243 ~~~--~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 243 THL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SSC--SCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CCC--CCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 222 23689999998777766644 5567777764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=91.69 E-value=5.2 Score=42.01 Aligned_cols=97 Identities=14% Similarity=0.269 Sum_probs=61.9
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECC----CCCE--EEEEeCCC---CEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDR----SGTL--LVTASIHG---NNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp----dG~l--LaTaS~dG---t~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
..+-+.|||+ +++.+..+.. ..+..+..-| .|+. ||.++..+ ..|+||++.|.. +
T Consensus 48 k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-----~-------- 111 (355)
T 3amr_A 48 KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-----G-------- 111 (355)
T ss_dssp TTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-----C--------
T ss_pred CCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-----C--------
Confidence 4578999999 7888888864 4566665555 2332 45555533 458999886432 1
Q ss_pred CCceeEEEEEee-----cCCcCcEEEEEE--ccC-CC-EEEEEeCCCeEEEEEcCC
Q 046828 434 TSSHVHLYKLHR-----GMTSAVIQDICF--SHY-SQ-WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 434 ~~~~~~l~~l~r-----G~t~a~I~sIaF--SpD-g~-~Las~S~dgTvhIw~i~~ 480 (627)
.+..+-+ +.....++.||+ +++ ++ ++.+...+|.+..|++..
T Consensus 112 -----~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 112 -----TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp -----CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred -----ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 1222211 111134788998 774 44 688888899999999865
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=91.53 E-value=15 Score=38.47 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-C-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTAS-I-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS-~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+.|.+.|+........+.........|+++|.+..|.-+. . .+. |..+++. |.. ....
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~d--------G~~----------~~~~ 240 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN--------GVD----------IYSL 240 (400)
T ss_dssp TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC-EEEEETT--------SCS----------CEEE
T ss_pred CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE-EEEEeCC--------CCc----------cEEE
Confidence 45677777765544444443344578999999655555554 2 244 6666653 210 1111
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLT 479 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~ 479 (627)
+..+. .....|+|+++++.|..+.. .++|..++++
T Consensus 241 -~~~~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 241 -VTENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp -ECSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -EECCC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 11222 24789999998888877654 5677777765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=91.37 E-value=4.1 Score=45.73 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=53.9
Q ss_pred CeEEEEECCCCeEEEEeccCC---------CCeEEEEECC-CCCEEEEEeCCCC----------EEEEEeCCCCCCCCCC
Q 046828 365 GMVVVKDIVSRSVISQFRAHT---------SPISALCFDR-SGTLLVTASIHGN----------NINIFRIMPSSSKGRS 424 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~---------~~Is~laFsp-dG~lLaTaS~dGt----------~I~Vwdi~p~~~~~~~ 424 (627)
..|..||..+..-......+. ..-.++.|.. +|++++.++.++. .|.+||.. +
T Consensus 369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~-------~ 441 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG-------T 441 (656)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT-------S
T ss_pred cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC-------C
Confidence 468888888765333222221 1235566654 8899999875431 35666643 1
Q ss_pred CCCccccCCCCceeEEEEEeecCCcCc-EEEEEEccCCCEEEEEeCC-----------CeEEEEEcCC
Q 046828 425 GSASQTYDWTSSHVHLYKLHRGMTSAV-IQDICFSHYSQWIAIVSSR-----------GTCHIFVLTP 480 (627)
Q Consensus 425 g~~~~~~~~~~~~~~l~~l~rG~t~a~-I~sIaFSpDg~~Las~S~d-----------gTvhIw~i~~ 480 (627)
.. +.... ...+...+ -.+.+..||++.+++++.+ .++.+|+...
T Consensus 442 ~~-----------W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 442 SP-----------NTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CC-----------EEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CC-----------eeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 11 11110 00111122 2345667899999998854 5789998754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.36 E-value=3.6 Score=47.19 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=29.8
Q ss_pred cEEEEEECCCC-ceEEEEecCCeEEEEEecC--cEEE-EEeC-----CeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSH-NYVHVLRFRSTVYMVRCSP--RIVA-VGLA-----AQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~-~~V~tL~f~s~V~sV~~s~--~~La-V~~~-----~~I~i~D~~t~e 229 (627)
.+|.++|+.++ +.+.. .+.....++.+++ +.|+ +..+ .+|+++++.+.+
T Consensus 201 ~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~ 258 (751)
T 2xe4_A 201 YTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ 258 (751)
T ss_dssp EEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred EEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence 57999999999 64311 0111223566776 3454 4443 268999998875
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=90.82 E-value=2 Score=46.47 Aligned_cols=111 Identities=12% Similarity=0.150 Sum_probs=69.6
Q ss_pred CCCeEEEEECCCCeEEEEeccC----CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIVSRSVISQFRAH----TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH----~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+..||.-++.....-+.++.- -..|..|..||+|++||..+.++ |.|-.+ |.... .... .+.-.....
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~--V~Vv~L-P~~~~---~~~~-~~~~~~~q~ 111 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNE--IFVMEV-PWGYS---NVED-VSIQDAFQI 111 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSE--EEEEEC-CTTCS---CCCC-HHHHHTTEE
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCe--EEEEEe-cCccc---cCcc-cccccccce
Confidence 4578888887744333333321 22578899999999999998873 789888 53221 1000 000001112
Q ss_pred EEEEEee--cCCcCcEEEEEEcc---CCCEEEEEeCCCeEEEEEcCC
Q 046828 439 HLYKLHR--GMTSAVIQDICFSH---YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~r--G~t~a~I~sIaFSp---Dg~~Las~S~dgTvhIw~i~~ 480 (627)
+.|.+.. +...+.|..+-|.| .+..|++-.+|++|++|++..
T Consensus 112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 2333311 11235699999999 456899999999999999986
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.67 E-value=20 Score=36.73 Aligned_cols=94 Identities=7% Similarity=-0.019 Sum_probs=52.9
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
+.|.+.|+........+.........|+++|.+..|..+.... ..|..+++. |.. .... .
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------G~~----------~~~~-~ 198 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GSG----------RRII-A 198 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SCS----------CEES-C
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------CCC----------cEEE-E
Confidence 4566666654433333333334568999999655555554433 336666653 210 0111 1
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
..+. ..-..|+|+|+++.|..+. ..++|..++++
T Consensus 199 ~~~~--~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 199 DTHL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ECCC--CCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 1122 2368999999887776665 45677777765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=89.64 E-value=10 Score=46.94 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=40.6
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEe-cCcEEEEEeCCeEEEEeCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRC-SPRIVAVGLAAQIYCFDALT 227 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~-s~~~LaV~~~~~I~i~D~~t 227 (627)
++++|+|+.+.+.+++..|+.+|.==++ +++.|+...+..||-|++..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 6799999999999999999886543333 67999999999999999964
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=89.08 E-value=17 Score=35.04 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
.....|+|+|++..|..+......|.++|.. +. .+..+..+.. ....|++ |+.+|.
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~--------g~------------~~~~~~~~~~--~P~gi~~--d~~~ly 222 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--------QP------------GRRKVLEGLQ--YPFAVTS--YGKNLY 222 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------EE------------EEEEEEECCC--SEEEEEE--ETTEEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecC--------CC------------ceEEEecCCC--CceEEEE--eCCEEE
Confidence 3468899999988777777666668888874 11 2222222321 2456665 456666
Q ss_pred EEe-CCCeEEEEEcCC
Q 046828 466 IVS-SRGTCHIFVLTP 480 (627)
Q Consensus 466 s~S-~dgTvhIw~i~~ 480 (627)
++. ..+.|.+++...
T Consensus 223 va~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 223 YTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EEETTTTEEEEEETTT
T ss_pred EEECCCCeEEEEeCCC
Confidence 655 457887777653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=88.96 E-value=3.6 Score=41.07 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=49.5
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEE
Q 046828 374 SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453 (627)
Q Consensus 374 s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~ 453 (627)
..+.+..|..+ .....++|+++|+++++-...++ |..||.. +. ....+.. .....
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~-I~~~d~~--------g~------------~~~~~~~---~~~p~ 75 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGE-IVSITPD--------GN------------QQIHATV---EGKVS 75 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTE-EEEECTT--------CC------------EEEEEEC---SSEEE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCe-EEEECCC--------Cc------------eEEEEeC---CCCce
Confidence 34566777654 45678999999997777666665 6777743 21 1111111 13589
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
.|+|++|++++++.......+|+.+
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEE
Confidence 9999999997665544334344443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=87.74 E-value=14 Score=39.16 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=45.1
Q ss_pred eEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 388 ISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 388 Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
...++++| +|.++++-...+. |.+|+.. .+. ...+..+ +. ...-..|+|+||+++|.+
T Consensus 228 p~giavdp~~g~lyv~d~~~~~-V~~~~~~-------~~~----------~~~~~~~--~~-~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQ-VFRYDFT-------TQE----------TTPLFTI--QD-SGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTE-EEEEETT-------TTE----------EEEEEEC--SS-SSCCEEEEECTTSSEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCE-EEEEECC-------CCc----------EEEEEEc--CC-CCcceeEEEcCCCCEEEE
Confidence 45678999 7877766555554 6777763 110 0012222 11 123578999999996555
Q ss_pred E-eCCCeEEEEEcCC
Q 046828 467 V-SSRGTCHIFVLTP 480 (627)
Q Consensus 467 ~-S~dgTvhIw~i~~ 480 (627)
+ ...+.|++|+.+.
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 5 4677899988764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=87.51 E-value=24 Score=35.01 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=42.4
Q ss_pred eEEEEECCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 388 ISALCFDRSGTLLVTASI----------HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~----------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
...|+++++|.+.++... .+. |.+|| |. |. ....+....|.....+..+++
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~-v~~~d--~~------G~----------~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPK-GIKFD--EF------GN----------ILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEE-EEEEC--TT------SC----------EEEEEECCTTTTTSCCCEEEE
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccE-EEEEC--CC------CC----------EEEEEECCCCCccccceEEEE
Confidence 677999999998777654 232 44555 32 21 112333333432234677777
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCC
Q 046828 458 SHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+++..++....+.|.+|++..
T Consensus 292 -~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 292 -HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -ETTEEEEECSSCSEEEEEEC--
T ss_pred -eCCEEEEeecCCCceEEEeccc
Confidence 4666555555778899998764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=87.21 E-value=33 Score=36.35 Aligned_cols=54 Identities=9% Similarity=-0.024 Sum_probs=34.9
Q ss_pred CCCeEEEEECCCCeEEEEe-ccCCCC-eEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSRSVISQF-RAHTSP-ISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~-~aH~~~-Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..+.|..+|..+++....+ .....+ -..|+|+|+|..|..+....+.|+.++..
T Consensus 248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 3567888888766552222 211122 34699999999777777766668887764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=86.52 E-value=4.3 Score=42.55 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCeEEEEECCCC----eEEEEeccC-CCCeEEEEECCCCCEEEEEeCC---------------CCEEEEEeCCCCCCCCC
Q 046828 364 AGMVVVKDIVSR----SVISQFRAH-TSPISALCFDRSGTLLVTASIH---------------GNNINIFRIMPSSSKGR 423 (627)
Q Consensus 364 dG~V~IwD~~s~----~~l~~~~aH-~~~Is~laFspdG~lLaTaS~d---------------Gt~I~Vwdi~p~~~~~~ 423 (627)
...|.||++... ..+..+.+. -...+.+++.++|++.+|.... .+ =+||.+.|.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~-g~vyr~d~~----- 211 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW-SFVTYYSPN----- 211 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC-EEEEEECTT-----
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc-cEEEEEECC-----
Confidence 467777776543 223344432 2347899999999999987621 11 244544321
Q ss_pred CCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCC
Q 046828 424 SGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGG 483 (627)
Q Consensus 424 ~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg 483 (627)
.+..+..+.. .-+.|+||||+++|.++. ..++|+.|++...+.
T Consensus 212 ---------------~~~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 212 ---------------DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWT 255 (355)
T ss_dssp ---------------CCEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred ---------------eEEEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc
Confidence 0111223433 258899999998887665 578999999986543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=85.50 E-value=30 Score=34.17 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=43.8
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~ 467 (627)
...| +|||+.|..+......|.+|++... |.. .. ..++. .+ .....|++++||++.++.
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~------g~~-------~~-~~~~~--~~---~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDST------DKP-------GE-PEIFV--EQ---TNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTT------SCB-------CC-CEEEE--ES---CCCSSEEEBTTCCEEEEC
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCC------CCC-------Cc-cEEEe--cc---CCCCCeEECCCCCEEEEe
Confidence 3445 8899877777666556889997521 110 00 12221 11 124678999999887777
Q ss_pred eCCCeEEEEEc
Q 046828 468 SSRGTCHIFVL 478 (627)
Q Consensus 468 S~dgTvhIw~i 478 (627)
...+.|.+|+.
T Consensus 230 ~~~~~V~~~~~ 240 (306)
T 2p4o_A 230 HIYNSVVRIAP 240 (306)
T ss_dssp BTTCCEEEECT
T ss_pred CCCCeEEEECC
Confidence 77888888874
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=85.12 E-value=57 Score=37.03 Aligned_cols=75 Identities=17% Similarity=0.326 Sum_probs=48.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee-----cCCcCcEEEEEEccC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR-----GMTSAVIQDICFSHY 460 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r-----G~t~a~I~sIaFSpD 460 (627)
..|.+|..+++|.+.+ |+.+|- +..|+.. ++. ...+.... +.....|.+|+..++
T Consensus 357 ~~V~~i~~d~~g~lWi-Gt~~~G-l~~~~~~-------~~~-----------~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWI-GTNDGG-LNLYNPI-------TQR-----------FTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp SSEEEEEECTTSCEEE-EESSSC-EEEECTT-------TCC-----------EEEECCC------CCSCSCEEEEEEETT
T ss_pred CeeEEEEECCCCCEEE-EECCCC-eEEEcCC-------CCc-----------EEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 4699999999999776 444433 6788854 221 11121111 222345999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCC
Q 046828 461 SQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 461 g~~Las~S~dgTvhIw~i~~ 480 (627)
++.|-+++.++-+.+|+...
T Consensus 417 g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp TTEEEEEETTTEEEEEETTT
T ss_pred CCEEEEEeCcCceeEEeCCC
Confidence 98566677777788887653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=84.39 E-value=44 Score=35.28 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=35.4
Q ss_pred CCeEEEEECCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 364 AGMVVVKDIVSRSVISQFRA-HTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.+.|..+|...+.....+.. ....-..|+|+|+|++|..+....+.|.+|+..
T Consensus 247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 46788888876654222221 113357899999999777777766668888764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=83.19 E-value=5.6 Score=41.38 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=66.7
Q ss_pred CCCeEEEEECC---CCeEEEEec--cCC-----------CCeEEEEECCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCC
Q 046828 363 IAGMVVVKDIV---SRSVISQFR--AHT-----------SPISALCFDRSGTLLVTASIH-GNNINIFRIMPSSSKGRSG 425 (627)
Q Consensus 363 ~dG~V~IwD~~---s~~~l~~~~--aH~-----------~~Is~laFspdG~lLaTaS~d-Gt~I~Vwdi~p~~~~~~~g 425 (627)
.+..|..+|+. +++.+..+. +.. .....|+.+++|..-+|.+.. +. ||.+.|. |
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~---I~rV~pd------G 168 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA---IARVSAD------G 168 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE---EEEECTT------S
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe---EEEEeCC------C
Confidence 46789999998 776554433 221 247899999999999999877 65 4555443 2
Q ss_pred CCccccCCCCceeEEEEEee--cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 426 SASQTYDWTSSHVHLYKLHR--GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 426 ~~~~~~~~~~~~~~l~~l~r--G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.. ...+-+.. ..+..-...|++.|||+.|++....|.+..|++.
T Consensus 169 ~~----------~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 KT----------VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CC----------EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CE----------EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 10 12222222 2222236789999999999998789999999987
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=81.45 E-value=14 Score=36.67 Aligned_cols=86 Identities=8% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.|..+|..+++....... ......|+|+|+|+.|..+......|.+|++.... .+. ...+.
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~----~~~-----------~~~~~ 226 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK----KGT-----------AEVLV 226 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT----TTC-----------EEEEE
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc----CCc-----------cceEE
Confidence 457899999887764332222 12345799999999766665443347888875110 011 12221
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
-.. . ...|++.+||++.++...
T Consensus 227 ~~~----g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 227 KIP----N-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp ECS----S-EEEEEECTTSCEEEEEEE
T ss_pred eCC----C-CCCeEECCCCCEEEEecC
Confidence 111 2 678999999986655543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 627 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.001 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 19/137 (13%), Positives = 33/137 (24%), Gaps = 30/137 (21%)
Query: 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG------------------ 407
+ D+ F H S I+A+CF +G T S
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 408 ----NNINIFRIMPSSSKGRSGSASQT---YDW-TSSHVHLYKLHRGMTSAVIQDICFSH 459
I S +G +D + + H + + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR----VSCLGVTD 322
Query: 460 YSQWIAIVSSRGTCHIF 476
+A S I+
Sbjct: 323 DGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.9 bits (89), Expect = 0.001
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 355 ASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTAS 404
+ D V D + H + +S L G + T S
Sbjct: 286 LAGYDD----FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 18/140 (12%)
Query: 381 FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440
H + ++ F R G +V+ S+ ++ ++ + +A+ D + +
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQ---------NANNKSDSKTPNSGT 299
Query: 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLS 500
++ + + + ++I S + L + H +
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRN----- 351
Query: 501 PVLSVPWWSSPSFMINQPSF 520
V+SV + S F
Sbjct: 352 SVISVAVANGSSLGPEYNVF 371
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.5 bits (90), Expect = 7e-04
Identities = 11/110 (10%), Positives = 25/110 (22%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGS 426
V + S + + H+ + SG + +HGN + +
Sbjct: 40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 99
Query: 427 ASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIF 476
S K + + + + + G
Sbjct: 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAM 149
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.0 bits (89), Expect = 0.001
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 337 DGSSSPVSSNSSWKAGRN-ASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR 395
G + V G+ S + D + V D ++ + AH +++L F +
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADD----KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299
Query: 396 SGTLLVTAS 404
+ +VT S
Sbjct: 300 TAPYVVTGS 308
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.91 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.91 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.89 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.89 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.87 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.86 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.86 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.85 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.84 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.84 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.83 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.82 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.82 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.81 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.8 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.79 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.78 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.78 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.76 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.75 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.75 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.75 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.75 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.74 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.7 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.66 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.63 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.54 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.52 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.5 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.5 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.49 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.26 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.25 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.25 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.2 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.14 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.06 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.95 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.93 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.78 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.66 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.62 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.58 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.54 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.38 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.13 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.05 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.05 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.03 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.58 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.42 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.14 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.04 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.44 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.14 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.71 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.46 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.12 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 94.94 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 94.73 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 94.62 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.09 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 93.78 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 93.17 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 92.99 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 91.92 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 88.74 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 87.97 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 81.88 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 80.12 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=1.7e-22 Score=206.78 Aligned_cols=227 Identities=13% Similarity=0.118 Sum_probs=170.7
Q ss_pred EEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCccc
Q 046828 83 VLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGL 162 (627)
Q Consensus 83 vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~ 162 (627)
.|+.+..+.+.+||+++.. ..+++..|.+.|.++++.|+- .+||...
T Consensus 31 ~l~~~~~~~v~i~~~~~~~-~~~~~~~H~~~v~~~~~sp~g-------------~~latg~------------------- 77 (311)
T d1nr0a1 31 KIQYCNGTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSG-------------YYCASGD------------------- 77 (311)
T ss_dssp EEEEEETTEEEEEETTCSS-CCEEECCCSSCEEEEEECTTS-------------SEEEEEE-------------------
T ss_pred EEEEEeCCEEEEEECCCCc-eeEEEcCCCCCEEEEEEeCCC-------------CeEeccc-------------------
Confidence 3455667789999998754 466778899999999997642 5665422
Q ss_pred ccCCCCCCCCCCCCcCCcEEEEEECCCCceE--EEEe-cCCeEEEEEecC--cEEEEEeCC---eEEEEeCCCCceeEEE
Q 046828 163 VRDGYDEPQPGNVAMSPTAVRFYSLRSHNYV--HVLR-FRSTVYMVRCSP--RIVAVGLAA---QIYCFDALTLESKFSV 234 (627)
Q Consensus 163 ~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V--~tL~-f~s~V~sV~~s~--~~LaV~~~~---~I~i~D~~t~e~~~tl 234 (627)
.+++|+|||+.+++.+ .+++ +..+|.+|+|++ ++|+++.++ .++|||..+++...++
T Consensus 78 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l 142 (311)
T d1nr0a1 78 ---------------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL 142 (311)
T ss_dssp ---------------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC
T ss_pred ---------------cCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccc
Confidence 2378999999988754 4455 556999999997 677776543 4899999999887777
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
.+|..+ + +.+++.++...
T Consensus 143 ~~h~~~-------------v-------~~v~~~~~~~~------------------------------------------ 160 (311)
T d1nr0a1 143 TGQARA-------------M-------NSVDFKPSRPF------------------------------------------ 160 (311)
T ss_dssp CCCSSC-------------E-------EEEEECSSSSC------------------------------------------
T ss_pred cccccc-------------c-------cccccccccee------------------------------------------
Confidence 665432 2 22344332100
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEEC
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFD 394 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFs 394 (627)
. + ..+..||.|+|||+.+++.+..+..|..+|.+++|+
T Consensus 161 ----------~----------------------------l----~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~ 198 (311)
T d1nr0a1 161 ----------R----------------------------I----ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198 (311)
T ss_dssp ----------E----------------------------E----EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC
T ss_pred ----------e----------------------------e----cccccccccccccccccccccccccccccccccccC
Confidence 0 0 023478999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe------ecCCcCcEEEEEEccCCCEEEEEe
Q 046828 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH------RGMTSAVIQDICFSHYSQWIAIVS 468 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~------rG~t~a~I~sIaFSpDg~~Las~S 468 (627)
|+|++|++++.||. |+|||+. .+. .+..+. .||+ +.|.+|+|+||+++|++++
T Consensus 199 p~~~~l~~~~~d~~-v~~~d~~-------~~~------------~~~~~~~~~~~~~~h~-~~V~~~~~s~~~~~l~tgs 257 (311)
T d1nr0a1 199 PDGSLFASTGGDGT-IVLYNGV-------DGT------------KTGVFEDDSLKNVAHS-GSVFGLTWSPDGTKIASAS 257 (311)
T ss_dssp TTSSEEEEEETTSC-EEEEETT-------TCC------------EEEECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEE
T ss_pred cccccccccccccc-ccccccc-------ccc------------cccccccccccccccc-ccccccccCCCCCEEEEEe
Confidence 99999999999998 7999985 221 333332 2443 4599999999999999999
Q ss_pred CCCeEEEEEcCCCC
Q 046828 469 SRGTCHIFVLTPFG 482 (627)
Q Consensus 469 ~dgTvhIw~i~~~g 482 (627)
.||+|+||+++...
T Consensus 258 ~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 258 ADKTIKIWNVATLK 271 (311)
T ss_dssp TTSEEEEEETTTTE
T ss_pred CCCeEEEEECCCCc
Confidence 99999999997643
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=2.4e-22 Score=196.92 Aligned_cols=290 Identities=12% Similarity=0.142 Sum_probs=194.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|++.|..+.|.. ..+.+++++.|+.++|||+++... ...+..|.+.|..+.+.|.. .++
T Consensus 15 GH~~~I~~l~~sp------~~~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~h~~~V~~~~~~~~~-------------~~~ 74 (317)
T d1vyhc1 15 GHRSPVTRVIFHP------VFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFDHSG-------------KLL 74 (317)
T ss_dssp CCSSCEEEEEECS------SSSEEEEEESSSCEEEEETTTCCC-CEEECCCSSCEEEEEECTTS-------------SEE
T ss_pred CCCCCeEEEEEcC------CCCEEEEEeCCCeEEEEECCCCCE-EEEEeCCCCcEEEEeeeccc-------------ccc
Confidence 3778899999963 236777888899999999998654 44556788999888886542 555
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~ 216 (627)
+... ...++.+|+....+....+. +...+..+.+++ +.|+++.
T Consensus 75 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (317)
T d1vyhc1 75 ASCS----------------------------------ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120 (317)
T ss_dssp EEEE----------------------------------TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred cccc----------------------------------cccccccccccccccccccccccccceeeeccCCCceEEeec
Confidence 5432 01447788888888777666 455888888886 5666665
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
++.+++||+.+++.+.++..|... ...+++.+ ++||.++.+..+..+.....+
T Consensus 121 ~d~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~----------- 176 (317)
T d1vyhc1 121 RDKTIKMWEVQTGYCVKTFTGHREW-------------VRMVRPNQDGTLIASCSNDQTVRVWVVATKE----------- 176 (317)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------
T ss_pred cCcceeEeecccceeeeEEccCCCc-------------ceeeecccCCCEEEEEeCCCeEEEEeeccce-----------
Confidence 568999999999999998877543 33455554 788888766554432111000
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcce-eEEeeeeccccCCCCCCCccCC------CccccCcccccccCCCCCCe
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSN------SSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~------~~~~~g~~~~~~~~~~~dG~ 366 (627)
....+. ++.+. ..+. + .|++........ .....+.+ ...+..||.
T Consensus 177 ------------------~~~~~~--~~~~~i~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~ 228 (317)
T d1vyhc1 177 ------------------CKAELR--EHRHVVECIS-W----APESSYSSISEATGSETKKSGKPGPF---LLSGSRDKT 228 (317)
T ss_dssp ------------------EEEEEC--CCSSCEEEEE-E----CCSCGGGGGGGCCSCC-------CCE---EEEEETTSE
T ss_pred ------------------eeEEEe--cCCCCceEEE-E----eeccccceeeccccceeeeeccCCce---eEeccCCCE
Confidence 000000 00000 0000 0 011000000000 00000111 123567899
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
|++||+.+++.+..+.+|..+|.+++|+|+|++|++++.||+ |+|||+. ++. .+..+ .+
T Consensus 229 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~-------~~~------------~~~~~-~~ 287 (317)
T d1vyhc1 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYK-------NKR------------CMKTL-NA 287 (317)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCT-------TSC------------CCEEE-EC
T ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECC-------CCc------------EEEEE-cC
Confidence 999999999999999999999999999999999999999998 8999985 232 33444 56
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
|+ ..|.+|+|+||+++|++++.||+|+||+
T Consensus 288 h~-~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 288 HE-HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CS-SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CC-CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 65 3599999999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.1e-22 Score=202.18 Aligned_cols=274 Identities=15% Similarity=0.152 Sum_probs=184.3
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCce---EE-eeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVS---EL-VSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~---el-ls~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
+|.+.|..+.|.. .++. |+.|.++.++|||++...... ++ ...|++.|.++.+.|+.
T Consensus 49 ~H~~~V~~v~fs~------~g~~-latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg------------ 109 (337)
T d1gxra_ 49 NHGEVVCAVTISN------PTRH-VYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------ 109 (337)
T ss_dssp CCSSCCCEEEECS------SSSE-EEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS------------
T ss_pred CCCCcEEEEEECC------CCCE-EEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC------------
Confidence 4678888899963 2244 455668889999998754322 11 23578899999987643
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC--ceEEEEecC-CeEEEEEecC--c
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH--NYVHVLRFR-STVYMVRCSP--R 210 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~--~~V~tL~f~-s~V~sV~~s~--~ 210 (627)
.+|++.. .+++|++||+... +...++..+ ..|..+.+++ .
T Consensus 110 -~~l~s~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 154 (337)
T d1gxra_ 110 -CTLIVGG----------------------------------EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154 (337)
T ss_dssp -SEEEEEE----------------------------------SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS
T ss_pred -CEEEEee----------------------------------cccccccccccccccccccccccccccccccccccccc
Confidence 4565432 1367999998755 455666644 4889999987 6
Q ss_pred EEEEEeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 211 IVAVGLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 211 ~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
+|+++.. ..|++||+.+++.......|..+ ...+++++ +.++++..+..+.++..
T Consensus 155 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~-------------v~~l~~s~~~~~~~~~~~d~~v~i~d~--------- 212 (337)
T d1gxra_ 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTVRSWDL--------- 212 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEET---------
T ss_pred ccccccccccccccccccccccccccccccc-------------ccccccccccccccccccccccccccc---------
Confidence 7777654 57999999999887777665443 34456654 57787765544332210
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~ 366 (627)
+..+. +..+...+. ..+. | .|+ +.. ...+..+|.
T Consensus 213 -------------------~~~~~----~~~~~~~~~i~~l~--~---~~~--------------~~~---l~~~~~d~~ 247 (337)
T d1gxra_ 213 -------------------REGRQ----LQQHDFTSQIFSLG--Y---CPT--------------GEW---LAVGMESSN 247 (337)
T ss_dssp -------------------TTTEE----EEEEECSSCEEEEE--E---CTT--------------SSE---EEEEETTSC
T ss_pred -------------------cccee----ecccccccceEEEE--E---ccc--------------ccc---cceeccccc
Confidence 00000 000110000 0000 0 011 111 123567899
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
|++||+.+.+.. ....|..+|.+++|+|+|++|++++.||+ |+|||+. .+. .+..+ +
T Consensus 248 i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~-------~~~------------~~~~~--~ 304 (337)
T d1gxra_ 248 VEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTP-------YGA------------SIFQS--K 304 (337)
T ss_dssp EEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-------TCC------------EEEEE--E
T ss_pred cccccccccccc-cccccccccceEEECCCCCEEEEEeCCCe-EEEEECC-------CCC------------EEEEc--c
Confidence 999999988754 56789999999999999999999999997 8999985 232 44443 2
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+. ..|.+++|+||+++||+++.||+|+||+|
T Consensus 305 ~~-~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 ES-SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CS-SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CC-CCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 33 45999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=6.6e-22 Score=202.27 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=175.8
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCc-eEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNV-SELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~-~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.|++.|..+.|.. +++.+++.++++.++|||+...... ...+..|.++|..+.+.|.- .+
T Consensus 56 ~H~~~v~~~~~sp------~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~-------------~~ 116 (311)
T d1nr0a1 56 EHSHQTTVAKTSP------SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-------------KR 116 (311)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-------------CE
T ss_pred CCCCCEEEEEEeC------CCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc-------------cc
Confidence 4678899999942 2477888889999999999987643 34467788999999886532 56
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--c-EEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--R-IVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~-~LaV 214 (627)
|++++ ++ .+..+++|++++++.+++++.+ ..|.+|+|++ + +|++
T Consensus 117 l~~~~-~~-------------------------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 117 IAAVG-EG-------------------------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp EEEEE-CC-------------------------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred ccccc-cc-------------------------------ccccccccccccccccccccccccccccccccccceeeecc
Confidence 66543 11 1255899999999999999855 5899999986 3 5666
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+. ++.|++||+.+++....+..|..+ +..+++ .++...
T Consensus 165 gs~d~~i~i~d~~~~~~~~~~~~~~~~-------------i~~v~~-------~p~~~~--------------------- 203 (311)
T d1nr0a1 165 GSDDNTVAIFEGPPFKFKSTFGEHTKF-------------VHSVRY-------NPDGSL--------------------- 203 (311)
T ss_dssp EETTSCEEEEETTTBEEEEEECCCSSC-------------EEEEEE-------CTTSSE---------------------
T ss_pred ccccccccccccccccccccccccccc-------------cccccc-------Cccccc---------------------
Confidence 65 568999999999988887766543 222322 221100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
+ ..+..||.|++||+.
T Consensus 204 ---------------------------------l-------------------------------~~~~~d~~v~~~d~~ 219 (311)
T d1nr0a1 204 ---------------------------------F-------------------------------ASTGGDGTIVLYNGV 219 (311)
T ss_dssp ---------------------------------E-------------------------------EEEETTSCEEEEETT
T ss_pred ---------------------------------c-------------------------------ccccccccccccccc
Confidence 0 013468899999999
Q ss_pred CCeEEEEec-------cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 374 SRSVISQFR-------AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 374 s~~~l~~~~-------aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
+++.+..+. +|..+|.+|+|+|+|++|+|++.||+ |+|||+. ++ ..+..+. +
T Consensus 220 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~-------t~------------~~~~~l~-~ 278 (311)
T d1nr0a1 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVA-------TL------------KVEKTIP-V 278 (311)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-------TT------------EEEEEEE-C
T ss_pred cccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECC-------CC------------cEEEEEE-C
Confidence 988877764 58899999999999999999999997 8999986 33 2455553 3
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+.......++|.+++++|++++.||+|++|+.+
T Consensus 279 ~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 279 GTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 332222334444556689999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=2.3e-20 Score=186.12 Aligned_cols=271 Identities=11% Similarity=0.106 Sum_probs=180.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|++.|..+.|.. ..+.+++++.|+.++|||+.+.. ....+..|.++|..+.+.|.. .++
T Consensus 53 GH~~~I~~l~~s~------~~~~l~sgs~Dg~v~iWd~~~~~-~~~~~~~~~~~v~~v~~~~~~-------------~~l 112 (340)
T d1tbga_ 53 GHLAKIYAMHWGT------DSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSG-------------NYV 112 (340)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTTEEEEEETTTTE-EEEEEECSCSCEEEEEECTTS-------------SEE
T ss_pred CCCCCEEEEEECC------CCCEEEEEECCCceeeeecccce-eEEEEecccccEEeeEeeccc-------------eee
Confidence 4788899999964 23567778888899999999754 345566788999999987643 444
Q ss_pred EEEEccCccC-------Ccc---eeeeccCcccccC-CCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEe
Q 046828 140 LVVACDEAKN-------SGL---VHVHVGRDGLVRD-GYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRC 207 (627)
Q Consensus 140 avv~~d~~~~-------~g~---~~~~~~~~~~~~~-g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~ 207 (627)
+....|..-. ... ............. .............+.....|+..+........ ....+..+.+
T Consensus 113 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (340)
T d1tbga_ 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp EEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred eeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecc
Confidence 4433222100 000 0000000000000 00000000112234667788887777666655 4457777777
Q ss_pred cC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCC
Q 046828 208 SP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSL 284 (627)
Q Consensus 208 s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~ 284 (627)
.+ .+++++. ++.|++||+.+++.+.++.+|..+ +..+ ++.++...
T Consensus 193 ~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~-------------i~~v-------~~~p~~~~------------ 240 (340)
T d1tbga_ 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD-------------INAI-------CFFPNGNA------------ 240 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSC-------------EEEE-------EECTTSSE------------
T ss_pred ccccceeEEeecCceEEEEECCCCcEEEEEeCCCCC-------------eEEE-------EECCCCCE------------
Confidence 65 5666665 568999999999999888776543 2223 33321100
Q ss_pred CCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCC
Q 046828 285 TPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIA 364 (627)
Q Consensus 285 t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~d 364 (627)
+ +.++.|
T Consensus 241 ---------------------------l----------------------------------------------~s~s~d 247 (340)
T d1tbga_ 241 ---------------------------F----------------------------------------------ATGSDD 247 (340)
T ss_dssp ---------------------------E----------------------------------------------EEEETT
T ss_pred ---------------------------E----------------------------------------------EEEeCC
Confidence 0 023468
Q ss_pred CeEEEEECCCCeEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 365 GMVVVKDIVSRSVISQFR--AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~--aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
|.|++||+...+.+..+. .|..+|.+++|+|+|++|++++.||+ |+|||+. ++ ..+..
T Consensus 248 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~-------~~------------~~~~~ 307 (340)
T d1tbga_ 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDAL-------KA------------DRAGV 307 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETT-------TC------------CEEEE
T ss_pred CeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECC-------CC------------cEEEE
Confidence 999999999998877664 56778999999999999999999998 8999985 33 25555
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
+ +||.. .|.+|+|+||+++||+++.||+|+||+
T Consensus 308 ~-~~H~~-~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 308 L-AGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp E-CCCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred E-cCCCC-CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 5 67754 599999999999999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=9.8e-21 Score=194.39 Aligned_cols=264 Identities=15% Similarity=0.188 Sum_probs=173.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEee-----------------ecCCceEEEEEeeC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVS-----------------RRDDPVTFLQMQPL 122 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells-----------------~~dG~V~~v~~lp~ 122 (627)
+|++.|..+.|... .++|+.|.++.++|||+.+...+.++.. .++..|+.+.+.|+
T Consensus 60 ~H~~~V~~l~fs~d-------g~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 132 (388)
T d1erja_ 60 DHTSVVCCVKFSND-------GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132 (388)
T ss_dssp ECSSCCCEEEECTT-------SSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCCCcEEEEEECCC-------CCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence 47788999999641 3466778899999999998654333221 13344555555432
Q ss_pred CCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCe
Q 046828 123 PAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRST 201 (627)
Q Consensus 123 p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~ 201 (627)
..+|+..+ .+++|++||..+++.+..+. +...
T Consensus 133 -------------~~~l~s~~----------------------------------~dg~v~i~~~~~~~~~~~~~~h~~~ 165 (388)
T d1erja_ 133 -------------GKFLATGA----------------------------------EDRLIRIWDIENRKIVMILQGHEQD 165 (388)
T ss_dssp -------------SSEEEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSC
T ss_pred -------------CCcceecc----------------------------------ccccccccccccccccccccccccc
Confidence 24554322 23679999999999999988 4569
Q ss_pred EEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCc
Q 046828 202 VYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGR 278 (627)
Q Consensus 202 V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr 278 (627)
|.++.+++ ..++++. ++.|++||..+.+.......+... . .+++.+.+
T Consensus 166 v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------------~-----~~~~~~~~-------- 216 (388)
T d1erja_ 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV----------------T-----TVAVSPGD-------- 216 (388)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE----------------E-----EEEECSTT--------
T ss_pred ccccccccccccccccccceeeeeeecccccccccccccccc----------------c-----cccccCCC--------
Confidence 99999986 4566654 568999999998776655433211 1 11121110
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccc
Q 046828 279 LSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHS 358 (627)
Q Consensus 279 ~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~ 358 (627)
+.+ +
T Consensus 217 -------------------~~~-----------------------------------------------------l---- 220 (388)
T d1erja_ 217 -------------------GKY-----------------------------------------------------I---- 220 (388)
T ss_dssp -------------------CCE-----------------------------------------------------E----
T ss_pred -------------------CCe-----------------------------------------------------E----
Confidence 000 0
Q ss_pred cCCCCCCeEEEEECCCCeEEEEe-------ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQF-------RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~-------~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
..+..||.|++||+.++..+..+ .+|..+|.+|+|+|+|++|++++.||+ |+|||+..... ....
T Consensus 221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~-------~~~~ 292 (388)
T d1erja_ 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANN-------KSDS 292 (388)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----------------
T ss_pred EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc-EEEEeccCCcc-------cccc
Confidence 02346889999999988766554 468899999999999999999999997 89999852110 0000
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
............ ..+. ..|.+++|+||+++|++++.||+|+||++........+..|..
T Consensus 293 ~~~~~~~~~~~~-~~~~-~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~ 351 (388)
T d1erja_ 293 KTPNSGTCEVTY-IGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351 (388)
T ss_dssp ------CEEEEE-ECCS-SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ccccccceeeec-cccc-ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC
Confidence 000000122222 3333 3599999999999999999999999999987655556666644
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.87 E-value=1.2e-19 Score=180.76 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=96.2
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+..++.|++||+.+++.+..+.+|..+|.+|+|+|+|.+|++++.||+ |++||+. . . ..
T Consensus 201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~-~------~------------~~ 260 (340)
T d1tbga_ 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLR-A------D------------QE 260 (340)
T ss_dssp EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-T------T------------EE
T ss_pred EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeec-c------c------------cc
Confidence 4567999999999999999999999999999999999999999999998 7999985 1 1 13
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccccc
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVD 495 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~ 495 (627)
+..+........|.+++|+||+++|++++.||+|+||++........+..|...+.
T Consensus 261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~ 316 (340)
T d1tbga_ 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316 (340)
T ss_dssp EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 33333333344599999999999999999999999999987666666777765443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.7e-19 Score=178.66 Aligned_cols=307 Identities=16% Similarity=0.149 Sum_probs=191.5
Q ss_pred CCCCcEEE-EEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLW-SSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~w-a~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.|.+.|+. +.|| ++.+++.|+|+.++|||+.+.. ....+..|.+.|..+.+.|. +
T Consensus 14 GH~~~V~s~~~~~--------g~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~h~~~V~~v~~~~~---------------~ 69 (342)
T d2ovrb2 14 GHDDHVITCLQFC--------GNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRDN---------------I 69 (342)
T ss_dssp CSTTSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCC-EEEECCCCSSCEEEEEEETT---------------E
T ss_pred CcCCceEEEEEEC--------CCEEEEEeCCCeEEEEECCCCC-EEEEEeCCCCCEEEEEeCCC---------------c
Confidence 46777864 3443 2678889999999999998755 44556678999988887642 3
Q ss_pred EEEEEccCccC-----Ccceeee-ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecCcE
Q 046828 139 LLVVACDEAKN-----SGLVHVH-VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSPRI 211 (627)
Q Consensus 139 lavv~~d~~~~-----~g~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~~~ 211 (627)
|+....|.+-. ....... .............+........+.+|.+|+.++++....+.... ...........
T Consensus 70 l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (342)
T d2ovrb2 70 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR 149 (342)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSC
T ss_pred cccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccce
Confidence 33332222100 0000000 00000000000000000112346889999999999999988654 44445555555
Q ss_pred EEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 212 VAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 212 LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
++++ .++.|++||....+.+.++.+|... ...++..+..|+.++.+..+.+|....
T Consensus 150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~s~~~dg~i~~~d~~~---------- 206 (342)
T d2ovrb2 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSIRVWDVET---------- 206 (342)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCEEEEETTT----------
T ss_pred eeeecCCCeEEEeecccceeeEEEcCcccc-------------cccccCCCCEEEEEeCCCeEEEeeccc----------
Confidence 5555 5668999999999999999888766 345777888999988776655442110
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+. .+ .. ..++... ..+. +....+ ..++.||.|+|
T Consensus 207 -------~~-----------~~-~~--~~~~~~~v~~~~--------------------~~~~~l----~s~s~d~~i~i 241 (342)
T d2ovrb2 207 -------GN-----------CI-HT--LTGHQSLTSGME--------------------LKDNIL----VSGNADSTVKI 241 (342)
T ss_dssp -------CC-----------EE-EE--ECCCCSCEEEEE--------------------EETTEE----EEEETTSCEEE
T ss_pred -------ce-----------ee-eE--ecccccceeEEe--------------------cCCCEE----EEEcCCCEEEE
Confidence 00 00 00 0011100 0000 000111 24568999999
Q ss_pred EECCCCeEEEEecc---CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee-
Q 046828 370 KDIVSRSVISQFRA---HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR- 445 (627)
Q Consensus 370 wD~~s~~~l~~~~a---H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r- 445 (627)
||+...+....+.. |...+.+++|+ +.+|++|+.||+ |+|||+. +|. .++++..
T Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~-i~iwd~~-------tg~------------~i~~~~~~ 299 (342)
T d2ovrb2 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT-VKLWDLK-------TGE------------FIRNLVTL 299 (342)
T ss_dssp EETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE-EEEEETT-------TCC------------EEEEEEEC
T ss_pred EecccccccccccccceeeeceeecccC--CCeeEEEcCCCE-EEEEECC-------CCC------------EEEEEecc
Confidence 99999988887775 45567777665 679999999998 8999996 342 5555543
Q ss_pred --cCCcCcEEEEEEccCCCEEEEEeCCCe----EEEEEcCC
Q 046828 446 --GMTSAVIQDICFSHYSQWIAIVSSRGT----CHIFVLTP 480 (627)
Q Consensus 446 --G~t~a~I~sIaFSpDg~~Las~S~dgT----vhIw~i~~ 480 (627)
+.....|.+|+|+||+++||+++.||| +++||++.
T Consensus 300 ~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 300 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 222346999999999999999999997 99999864
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=3.2e-19 Score=182.92 Aligned_cols=245 Identities=13% Similarity=0.139 Sum_probs=168.1
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
+...|.-+.|.. +.+.+++.+.++.+++||+.... ....+..|.+.|..+.+.+.. ..++
T Consensus 120 ~~~~V~~l~~s~------~~~~l~s~~~dg~v~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~-------------~~~~ 179 (388)
T d1erja_ 120 SDLYIRSVCFSP------DGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSG-------------DKLV 179 (388)
T ss_dssp CCCBEEEEEECT------TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTS-------------SEEE
T ss_pred CCCCEEEEEECC------CCCcceecccccccccccccccc-ccccccccccccccccccccc-------------cccc
Confidence 344466666642 23677778888899999998754 344455578888888876542 3443
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEe-
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGL- 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~- 216 (627)
+.. .++.|++||+++...+...........+.+.+ ++|+++.
T Consensus 180 ~~~----------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (388)
T d1erja_ 180 SGS----------------------------------GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225 (388)
T ss_dssp EEE----------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred ccc----------------------------------cceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC
Confidence 321 12679999999999999888888777777764 6787775
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
++.|++||+.+++....+....... .+. ..++ ..|++.++...
T Consensus 226 d~~i~i~~~~~~~~~~~~~~~~~~~---~~h------~~~v----~~l~~s~~~~~------------------------ 268 (388)
T d1erja_ 226 DRAVRVWDSETGFLVERLDSENESG---TGH------KDSV----YSVVFTRDGQS------------------------ 268 (388)
T ss_dssp TSCEEEEETTTCCEEEEEC---------CCC------SSCE----EEEEECTTSSE------------------------
T ss_pred CCeEEEeecccCccceeeccccccc---cCC------CCCE----EEEEECCCCCE------------------------
Confidence 5689999999998877764321100 000 0001 12333321100
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR- 375 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~- 375 (627)
+ ..+..||.|++||+.+.
T Consensus 269 ---------------------------------------------------------l----~s~~~d~~i~iwd~~~~~ 287 (388)
T d1erja_ 269 ---------------------------------------------------------V----VSGSLDRSVKLWNLQNAN 287 (388)
T ss_dssp ---------------------------------------------------------E----EEEETTSEEEEEEC----
T ss_pred ---------------------------------------------------------E----EEEECCCcEEEEeccCCc
Confidence 0 12346788999998754
Q ss_pred -----------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 376 -----------SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 376 -----------~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.....+..|...|.+++|+|+|++|++|+.||+ |+|||+. ++ ..+.++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~-------~~------------~~~~~l- 346 (388)
T d1erja_ 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKK-------SG------------NPLLML- 346 (388)
T ss_dssp -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETT-------TC------------CEEEEE-
T ss_pred cccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECC-------CC------------cEEEEE-
Confidence 345566789999999999999999999999997 8999986 33 255555
Q ss_pred ecCCcCcEEEEE------EccCCCEEEEEeCCCeEEEEEcC
Q 046828 445 RGMTSAVIQDIC------FSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 445 rG~t~a~I~sIa------FSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+||+. .|.+++ |+||+++||+++.||+|+||+++
T Consensus 347 ~~H~~-~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 347 QGHRN-SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ECCSS-CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred eCCCC-CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 67754 588886 56799999999999999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=3.4e-19 Score=184.93 Aligned_cols=246 Identities=12% Similarity=0.111 Sum_probs=169.1
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
..|+|..+.|... ++.+++.+.++.++|||++... .....+..|+++|+.+++.|+. .+|
T Consensus 6 ~~~pIt~~~~s~d------g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~-------------~~l 66 (371)
T d1k8kc_ 6 LVEPISCHAWNKD------RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-------------NRI 66 (371)
T ss_dssp CSSCCCEEEECTT------SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-------------TEE
T ss_pred CCCCeEEEEECCC------CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC-------------CEE
Confidence 4588999999742 2455556666679999998644 2345567799999999998753 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec---CCeEEEEEecC--cEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF---RSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f---~s~V~sV~~s~--~~LaV 214 (627)
+.++ .+++|+|||+++++....+.+ ...|.++++++ +.|++
T Consensus 67 ~s~s----------------------------------~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 112 (371)
T d1k8kc_ 67 VTCG----------------------------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV 112 (371)
T ss_dssp EEEE----------------------------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE
T ss_pred EEEE----------------------------------CCCeEEEEeeccccccccccccccccccccccccccccccee
Confidence 5432 136799999999887776654 45899999987 77777
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
+. ++.|++|+....+....+.....+. .-.+..++++| ++||.++.+
T Consensus 113 ~s~d~~i~i~~~~~~~~~~~~~~~~~~~---------~~~v~~v~~~p~~~~l~s~s~D--------------------- 162 (371)
T d1k8kc_ 113 GSGSRVISICYFEQENDWWVCKHIKKPI---------RSTVLSLDWHPNSVLLAAGSCD--------------------- 162 (371)
T ss_dssp EETTSSEEEEEEETTTTEEEEEEECTTC---------CSCEEEEEECTTSSEEEEEETT---------------------
T ss_pred ecccCcceeeeeeccccccccccccccc---------ccccccccccccccceeccccC---------------------
Confidence 76 4579999987766554443221110 00022344443 455555433
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
|.|+|||
T Consensus 163 -------------------------------------------------------------------------~~v~v~~ 169 (371)
T d1k8kc_ 163 -------------------------------------------------------------------------FKCRIFS 169 (371)
T ss_dssp -------------------------------------------------------------------------SCEEEEE
T ss_pred -------------------------------------------------------------------------cEEEEEe
Confidence 3333333
Q ss_pred CC------------------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 372 IV------------------SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 372 ~~------------------s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
+. .++.+..+..|...|.+++|+|+|++||+++.||+ |++||+. .+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~-------~~-------- 233 (371)
T d1k8kc_ 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADAD-------KK-------- 233 (371)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGG-------GT--------
T ss_pred eccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeee-------cc--------
Confidence 32 23567788899999999999999999999999997 8999986 22
Q ss_pred CCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 434 TSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
..+..+ .++. ..|.+++|+||+++||+++ |+.+++|..+...+..
T Consensus 234 ----~~~~~~-~~~~-~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~ 278 (371)
T d1k8kc_ 234 ----MAVATL-ASET-LPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKL 278 (371)
T ss_dssp ----TEEEEE-ECSS-CCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEE
T ss_pred ----cceeee-eccc-ccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceE
Confidence 255555 3443 3599999999999988765 7888888876655443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.84 E-value=4.3e-19 Score=176.30 Aligned_cols=241 Identities=12% Similarity=0.068 Sum_probs=168.1
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..|.+.|..+.|.. +.+.++..++|+.++|||+++......+...|.++|..+.+.|.. .+
T Consensus 9 ~GH~~~V~~l~~s~------dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-------------~~ 69 (299)
T d1nr0a2 9 YGHNKAITALSSSA------DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-------------DL 69 (299)
T ss_dssp CCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-------------CE
T ss_pred CCCCCCcEEEEECC------CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-------------ee
Confidence 45788999999963 236788888999999999998665444445678899998887542 34
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce----EEEEecCCeEEEEEecC--cEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY----VHVLRFRSTVYMVRCSP--RIV 212 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~----V~tL~f~s~V~sV~~s~--~~L 212 (627)
+ +++. +.+|++|++...+. .....+...+..+.+++ +++
T Consensus 70 ~-~~~~----------------------------------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 114 (299)
T d1nr0a2 70 F-TVSW----------------------------------DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 114 (299)
T ss_dssp E-EEET----------------------------------TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred e-cccc----------------------------------eeeEEEeccCCccccccccccccccccccccccccccccc
Confidence 3 3331 25799999765432 22334566888999986 788
Q ss_pred EEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 213 AVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 213 aV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
+++..+.|.+|+... ...+..... . ..+++.++...
T Consensus 115 ~~~~~~~i~~~~~~~---~~~~~~~~~--------------~-------~~~~~s~~~~~-------------------- 150 (299)
T d1nr0a2 115 VAACYKHIAIYSHGK---LTEVPISYN--------------S-------SCVALSNDKQF-------------------- 150 (299)
T ss_dssp EEEESSEEEEEETTE---EEEEECSSC--------------E-------EEEEECTTSCE--------------------
T ss_pred ccccccccccccccc---ccccccccc--------------c-------ccccccccccc--------------------
Confidence 888899999998542 222211100 1 12333332100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+ ..+..+|.|++||+
T Consensus 151 -------------------l----------------------------------------------~~g~~dg~i~~~d~ 165 (299)
T d1nr0a2 151 -------------------V----------------------------------------------AVGGQDSKVHVYKL 165 (299)
T ss_dssp -------------------E----------------------------------------------EEEETTSEEEEEEE
T ss_pred -------------------c----------------------------------------------cccccccccccccc
Confidence 0 01346899999999
Q ss_pred CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE--EeecCCc
Q 046828 373 VSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK--LHRGMTS 449 (627)
Q Consensus 373 ~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~--l~rG~t~ 449 (627)
.+++... ....|..+|.+++|+|+|++|++++.+|+ |++||+. ++. .+.. ...+|.
T Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~-------~~~------------~~~~~~~~~~h~- 224 (299)
T d1nr0a2 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVA-------NNF------------ELAHTNSWTFHT- 224 (299)
T ss_dssp ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGG-------GTT------------EESCCCCCCCCS-
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccc-------ccc------------cccccccccccc-
Confidence 8876544 44579999999999999999999999998 7999985 121 1111 113443
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
..|.+++|+||+++||+++.||+|+||+++....
T Consensus 225 ~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 225 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred cccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence 4699999999999999999999999999986543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=4.1e-19 Score=181.46 Aligned_cols=247 Identities=12% Similarity=0.031 Sum_probs=166.3
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEE-------eeecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSEL-------VSRRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~el-------ls~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
...|..+.|... . ..+.++..+.|+.++|||+........+ +..+.++|..+.+.+..
T Consensus 63 ~~~v~~v~fsP~--~--~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~----------- 127 (325)
T d1pgua1 63 SSVVTTVKFSPI--K--GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG----------- 127 (325)
T ss_dssp TSCEEEEEECSS--T--TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-----------
T ss_pred CCCEEEEEEeeC--C--CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-----------
Confidence 467888999532 1 2245566778889999999764433222 33467888888876543
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC---c
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP---R 210 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~---~ 210 (627)
.+|++++. + .+..+++|+..+++.+.+++. ...|.++.+++ .
T Consensus 128 --~~l~~~~~------~--------------------------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 173 (325)
T d1pgua1 128 --RRLCVVGE------G--------------------------RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 173 (325)
T ss_dssp --SEEEEEEC------C--------------------------SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred --Cccceeec------c--------------------------ccceEEEEeecccccceeeeecccccccccccccccc
Confidence 45555441 1 125589999999999999984 55999999986 3
Q ss_pred EEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+++++ .++.|++||..+++...++.++... ...+ .-+++.++..
T Consensus 174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~-------------~~~v----~~v~~~pd~~------------------ 218 (325)
T d1pgua1 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-------------GSFV----RDVEFSPDSG------------------ 218 (325)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCT-------------TCCE----EEEEECSTTC------------------
T ss_pred eEEEeecccccccccccccccceecccccCC-------------CCcc----EEeeeccccc------------------
Confidence 45555 4678999999998877776554221 0011 2244443210
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
.+ + ..+..||.|+|
T Consensus 219 ---------~~-----------------------------------------------------l----~s~~~d~~i~i 232 (325)
T d1pgua1 219 ---------EF-----------------------------------------------------V----ITVGSDRKISC 232 (325)
T ss_dssp ---------CE-----------------------------------------------------E----EEEETTCCEEE
T ss_pred ---------ee-----------------------------------------------------c----cccccccceee
Confidence 00 0 02347899999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEEC---CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFD---RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFs---pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
||+.+++.+..|++|..++..+.|+ |||++|++++.||+ |+|||+. ++ ..+..+.-.
T Consensus 233 wd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~-------~~------------~~~~~~~~~ 292 (325)
T d1pgua1 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVT-------TS------------KCVQKWTLD 292 (325)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETT-------TT------------EEEEEEECC
T ss_pred eeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECC-------CC------------CEEEEEEec
Confidence 9999999999999999888777776 89999999999997 8999986 33 234444222
Q ss_pred CCcCcEEEEEEccC-CCEEEEEeCCCeEEEEEc
Q 046828 447 MTSAVIQDICFSHY-SQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 447 ~t~a~I~sIaFSpD-g~~Las~S~dgTvhIw~i 478 (627)
.....+..++|.++ ..+|+++|.||+|+||+|
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 22222444444432 247889999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=3.6e-19 Score=186.19 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=93.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCCCCcccc
Q 046828 360 DTDIAGMVVVKDIVSRSVISQF------RAHTSPISALCFDRSGTLLVTASIHGN--NINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~------~aH~~~Is~laFspdG~lLaTaS~dGt--~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
.+..||.|+|||+.+++++..+ .+|..+|.+|+|+|||++|++|+.|++ .|+|||+. +|......
T Consensus 200 sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~-------~g~~~~~l 272 (393)
T d1sq9a_ 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE-------FGERIGSL 272 (393)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT-------TCCEEEEE
T ss_pred EEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccc-------cceeeeee
Confidence 4568999999999999877655 468999999999999999999999986 48999986 23200000
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
..............||+. .|++|+|+||+++|++++.|++|+||++........++.|...+
T Consensus 273 ~~~~~~~~~~~~~~gH~~-~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v 334 (393)
T d1sq9a_ 273 SVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334 (393)
T ss_dssp CBC--------CCBSBSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred ccccccccceeeeecccC-ceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcc
Confidence 000000011122247754 59999999999999999999999999998766666778886644
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=1.9e-18 Score=168.70 Aligned_cols=235 Identities=14% Similarity=0.202 Sum_probs=161.8
Q ss_pred EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEE
Q 046828 105 ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRF 184 (627)
Q Consensus 105 ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~l 184 (627)
..|..|.++|.++++.|.. ++|+.++ .+++|+|
T Consensus 11 ~~L~GH~~~I~~l~~sp~~-------------~~l~s~s----------------------------------~Dg~i~i 43 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVF-------------SVMVSAS----------------------------------EDATIKV 43 (317)
T ss_dssp CEEECCSSCEEEEEECSSS-------------SEEEEEE----------------------------------SSSCEEE
T ss_pred EEEcCCCCCeEEEEEcCCC-------------CEEEEEe----------------------------------CCCeEEE
Confidence 3566799999999987642 6765432 1367999
Q ss_pred EECCCCceEEEEec-CCeEEEEEecC--cEEEEEeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEc
Q 046828 185 YSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVGLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVG 260 (627)
Q Consensus 185 wdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~ 260 (627)
||+++++.+++++. ...|.++.+++ .+++.+.. ..+.+|+....+....+..+... .
T Consensus 44 Wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~------ 104 (317)
T d1vyhc1 44 WDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN-------------V------ 104 (317)
T ss_dssp EETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC-------------E------
T ss_pred EECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccccccc-------------c------
Confidence 99999999999985 56999999987 67776654 46889998877765444333221 1
Q ss_pred CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCC
Q 046828 261 PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSS 340 (627)
Q Consensus 261 ~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~ 340 (627)
..+++.++...
T Consensus 105 -~~~~~~~~~~~-------------------------------------------------------------------- 115 (317)
T d1vyhc1 105 -SSVSIMPNGDH-------------------------------------------------------------------- 115 (317)
T ss_dssp -EEEEECSSSSE--------------------------------------------------------------------
T ss_pred -eeeeccCCCce--------------------------------------------------------------------
Confidence 11222221100
Q ss_pred CCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCC
Q 046828 341 SPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSS 420 (627)
Q Consensus 341 ~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~ 420 (627)
+ ..+..|+.+++||+.+++.+..+..|...+.+++|+|+|.+|++++.||+ |++|++.....
T Consensus 116 -------------~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-v~~~~~~~~~~ 177 (317)
T d1vyhc1 116 -------------I----VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT-VRVWVVATKEC 177 (317)
T ss_dssp -------------E----EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCE
T ss_pred -------------E----EeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe-EEEEeecccee
Confidence 0 02346899999999999999999999999999999999999999999998 79999852110
Q ss_pred C----C-----------CCCCCc--------------------c--ccC-----CC-CceeEEEEEeecCCcCcEEEEEE
Q 046828 421 K----G-----------RSGSAS--------------------Q--TYD-----WT-SSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 421 ~----~-----------~~g~~~--------------------~--~~~-----~~-~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
. + ..+... . +.+ |. .....+.++ .++. ..|.+++|
T Consensus 178 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~~~-~~v~~~~~ 255 (317)
T d1vyhc1 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHD-NWVRGVLF 255 (317)
T ss_dssp EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-ECCS-SCEEEEEE
T ss_pred eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE-eCCC-CCEEEEEE
Confidence 0 0 000000 0 000 00 001122333 4554 35999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 458 SHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
+||+++|++++.||+|+||++........+..|...+
T Consensus 256 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V 292 (317)
T d1vyhc1 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 292 (317)
T ss_dssp CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred CCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 9999999999999999999998776666777776543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.82 E-value=5.9e-18 Score=167.95 Aligned_cols=238 Identities=11% Similarity=0.166 Sum_probs=156.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC--ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN--VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~--~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
..+.+.|..+.|... .++++.|.++++++|++..... ...+...+...+..+.+.|..
T Consensus 52 ~~h~~~v~~v~~~~~-------g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g------------- 111 (299)
T d1nr0a2 52 DVHATMITGIKTTSK-------GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG------------- 111 (299)
T ss_dssp CSCSSCEEEEEECTT-------SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-------------
T ss_pred CCCCCcEEEEEeecc-------ceeecccceeeEEEeccCCcccccccccccccccccccccccccc-------------
Confidence 345678888888531 3588999999999999876431 223334455666666654421
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV 214 (627)
.+++ +.+ ...+++|+.. ....+.....+..+++++ ++|++
T Consensus 112 ~~~~-~~~----------------------------------~~~i~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 112 DIAV-AAC----------------------------------YKHIAIYSHG---KLTEVPISYNSSCVALSNDKQFVAV 153 (299)
T ss_dssp SCEE-EEE----------------------------------SSEEEEEETT---EEEEEECSSCEEEEEECTTSCEEEE
T ss_pred cccc-ccc----------------------------------cccccccccc---ccccccccccccccccccccccccc
Confidence 2332 221 1568999854 334455566778888887 67888
Q ss_pred Ee-CCeEEEEeCCCCceeEE-EEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFS-VLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~t-l~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
+. ++.|++||+.+.+.... ...|+.+ +.. +++.++...
T Consensus 154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~-------------i~~-------~~~~~~~~~-------------------- 193 (299)
T d1nr0a2 154 GGQDSKVHVYKLSGASVSEVKTIVHPAE-------------ITS-------VAFSNNGAF-------------------- 193 (299)
T ss_dssp EETTSEEEEEEEETTEEEEEEEEECSSC-------------EEE-------EEECTTSSE--------------------
T ss_pred cccccccccccccccccccccccccccc-------------ccc-------ccccccccc--------------------
Confidence 75 56899999988765432 2234332 222 333321100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+ ..++.+|.|++||+
T Consensus 194 -------------------l----------------------------------------------~~~~~d~~i~~~~~ 208 (299)
T d1nr0a2 194 -------------------L----------------------------------------------VATDQSRKVIPYSV 208 (299)
T ss_dssp -------------------E----------------------------------------------EEEETTSCEEEEEG
T ss_pred -------------------c----------------------------------------------cccccccccccccc
Confidence 0 01346789999999
Q ss_pred CCCeEE---EEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 373 VSRSVI---SQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 373 ~s~~~l---~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
.++..+ ..+..|..+|.+|+|+|+|++||+++.||+ |+|||+. . +.. ..+. ...++..
T Consensus 209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~-i~iwd~~-~------~~~----------~~~~-~~~~~~~ 269 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMN-K------PSD----------HPII-IKGAHAM 269 (299)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-C------TTS----------CCEE-ETTSSTT
T ss_pred cccccccccccccccccccccccccccccceEEEcCCCE-EEEEECC-C------CCc----------ceEE-EecCCCC
Confidence 877554 356679999999999999999999999998 8999986 2 110 1222 2234444
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
..|..++| +|+++|++++.||+|+||++.
T Consensus 270 ~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 270 SSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp SCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred CcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 45777655 667899999999999999984
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=8.7e-18 Score=162.39 Aligned_cols=276 Identities=12% Similarity=0.159 Sum_probs=164.0
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.++...|..+.|| .+.+++.+.|+.++|||+++.. ....+..|.+.|.++.+ .+ .+
T Consensus 12 ~~~~~~V~c~~~d--------~~~l~sgs~Dg~i~vWd~~~~~-~~~~l~~H~~~V~~v~~--~~-------------~~ 67 (293)
T d1p22a2 12 SETSKGVYCLQYD--------DQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--DE-------------RV 67 (293)
T ss_dssp CSSCCCEEEEECC--------SSEEEEEESSSCEEEEESSSCC-EEEEECCCSSCEEEEEC--CS-------------SE
T ss_pred CCCCCCEEEEEEc--------CCEEEEEeCCCeEEEEECCCCc-EEEEEecCCCCEeeeec--cc-------------ce
Confidence 3455667666664 2678888999999999999855 44556678899877764 22 34
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecCcEEEEEe-
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSPRIVAVGL- 216 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~~~LaV~~- 216 (627)
|+..+ .+++|++|+++++.......... ...........++++.
T Consensus 68 l~s~s----------------------------------~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (293)
T d1p22a2 68 IITGS----------------------------------SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 113 (293)
T ss_dssp EEEEE----------------------------------TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred eeccc----------------------------------ccccccccccccccccccccccccccccccccccceeeccc
Confidence 44322 12557788888777777776444 4444444445555443
Q ss_pred CCeEEEEeCCCCcee---EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESK---FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~---~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
.+.+.+||..+.+.. ..+..+... ...+...+..+..++.+..+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~~s~d~~i~~~d~~-------------- 166 (293)
T d1p22a2 114 DRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKYIVSASGDRTIKVWNTS-------------- 166 (293)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSC-------------EEEEEEETTEEEEEETTSEEEEEETT--------------
T ss_pred ccceeEeeccccccccccccccccccc-------------cccceecccccccccCCCceeeecCC--------------
Confidence 446777877765532 223334443 22344444444444444333221100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcc-eeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMG-YKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g-~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
.. +....+. ++.. ...+. +....+ ..+..||.|+|||+
T Consensus 167 --------------~~-~~~~~~~--~~~~~v~~~~--------------------~~~~~l----~~~~~dg~i~i~d~ 205 (293)
T d1p22a2 167 --------------TC-EFVRTLN--GHKRGIACLQ--------------------YRDRLV----VSGSSDNTIRLWDI 205 (293)
T ss_dssp --------------TC-CEEEEEE--CCSSCEEEEE--------------------EETTEE----EEEETTSCEEEEET
T ss_pred --------------CC-cEEEEEc--cccccccccc--------------------CCCCeE----EEecCCCEEEEEec
Confidence 00 0000000 0000 00000 000001 13467899999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+.+.+..+.+|...|.+ +++++.+|++++.||+ |+|||+...... . . ......+..+ ++|+. .|
T Consensus 206 ~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~--~-------~-~~~~~~~~~~-~~H~~-~V 270 (293)
T d1p22a2 206 ECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDP--R-------A-PAGTLCLRTL-VEHSG-RV 270 (293)
T ss_dssp TTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTST--T-------S-CTTTTEEEEE-CCCSS-CC
T ss_pred ccceeeeeecccceeeee--ccccceEEEEEcCCCE-EEEEECCCCccc--c-------c-cCCceeeEEe-cCCCC-CE
Confidence 999999999999998875 5678899999999998 899997411000 0 0 0001234444 67754 58
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.+|+| |+++|+++|.||+|+|||
T Consensus 271 ~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 271 FRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEE--cCCEEEEEecCCEEEEeC
Confidence 99998 577899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1e-17 Score=165.47 Aligned_cols=262 Identities=15% Similarity=0.193 Sum_probs=164.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|.+.|..+.|+. ++..+.|+.+++||+... ...|.+.|..+.+.+.. .+
T Consensus 11 gH~~~I~~l~~s~----------l~sgs~Dg~v~~Wd~~~~------~~~h~~~V~~~~~~~~~-------------~~- 60 (287)
T d1pgua2 11 GHNKGITALTVNP----------LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNSKAQ-------------EY- 60 (287)
T ss_dssp CCSSCEEEEETTT----------TEEEETTSCEEETTTTEE------ECCCCSCEEEEECCSTT-------------CC-
T ss_pred CCCCceEEEEECc----------EEEEeCCCeEEEEECCCC------CCCCCCCEEEEEecCCC-------------eE-
Confidence 4778888888742 678888888999987642 23566777766654321 11
Q ss_pred EEEEccCccCCcceeee-ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEeCC
Q 046828 140 LVVACDEAKNSGLVHVH-VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAA 218 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~~~ 218 (627)
+.++.|.+-..-..... ............+.. ......+..+.+|+..+++.++++++..++.++..+...++++..+
T Consensus 61 ~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 139 (287)
T d1pgua2 61 SSISWDDTLKVNGITKHEFGSQPKVASANNDGF-TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE 139 (287)
T ss_dssp EEEETTTEEEETTEEEEECSSCEEEEEECSSSE-EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEeeccccccccccccccccceeeeeeccCCc-eEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccc
Confidence 22222221000000000 000000000000000 0012234678899999999999999998888888888888777643
Q ss_pred --eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 219 --QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 219 --~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
.|++|++.+.+....+..... .++ .-|++.++...
T Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~~---------------~~v----~~~~~s~~~~~------------------------ 176 (287)
T d1pgua2 140 GNTIQVFKLSDLEVSFDLKTPLR---------------AKP----SYISISPSETY------------------------ 176 (287)
T ss_dssp TSCEEEEETTEEEEEEECSSCCS---------------SCE----EEEEECTTSSE------------------------
T ss_pred cceeeeeeccccceeeeeeeccC---------------Cce----eEEEeccCccc------------------------
Confidence 599999887655444322100 001 12334332100
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~ 376 (627)
+ +.+..+|.|+|||+.+++
T Consensus 177 ---------------------------------------------------------l----~~g~~dg~i~i~d~~~~~ 195 (287)
T d1pgua2 177 ---------------------------------------------------------I----AAGDVMGKILLYDLQSRE 195 (287)
T ss_dssp ---------------------------------------------------------E----EEEETTSCEEEEETTTTE
T ss_pred ---------------------------------------------------------c----ccccccccccceeecccc
Confidence 0 023468999999999988
Q ss_pred EEE-EeccCCCCeEEEEECCC----------CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 377 VIS-QFRAHTSPISALCFDRS----------GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 377 ~l~-~~~aH~~~Is~laFspd----------G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
.+. .+.+|..+|.+++|+|+ +.+||||+.||+ |+|||+. . +. .+.+..+
T Consensus 196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~-~------~~------------~~~~~~~ 255 (287)
T d1pgua2 196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVK-R------PM------------KIIKALN 255 (287)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESS-C------TT------------CCEEETT
T ss_pred cccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECC-C------CC------------eEEEEeC
Confidence 765 46799999999999875 468999999998 8999985 2 11 2334446
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
||.. .|.+|+|+||+ .|++++.||+|+||++
T Consensus 256 ~h~~-~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 256 AHKD-GVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp SSTT-CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCC-CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 7764 59999999997 5888999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.79 E-value=8.3e-18 Score=174.32 Aligned_cols=205 Identities=14% Similarity=0.123 Sum_probs=135.6
Q ss_pred cEEEEEECCCCc--eEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEE--cCCCCCCCCCCCcCcc
Q 046828 180 TAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVL--TYPVPHFGGQGTSGVN 251 (627)
Q Consensus 180 ~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~--~~p~~~~~~~g~~~~~ 251 (627)
+.|+|||+.+++ .+++|+ +..+|.+|+|++ ++|+++. ++.|+|||+.+++....+. .+..+
T Consensus 29 ~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~----------- 97 (371)
T d1k8kc_ 29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA----------- 97 (371)
T ss_dssp SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC-----------
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccc-----------
Confidence 679999998886 567776 456999999986 7777775 4589999998876554443 22111
Q ss_pred cccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 252 IGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 252 ~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
+.. ++|.++... +
T Consensus 98 --v~~-------i~~~p~~~~---------------------------------------l------------------- 110 (371)
T d1k8kc_ 98 --ARC-------VRWAPNEKK---------------------------------------F------------------- 110 (371)
T ss_dssp --EEE-------EEECTTSSE---------------------------------------E-------------------
T ss_pred --ccc-------ccccccccc---------------------------------------c-------------------
Confidence 112 233321100 0
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe----EEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS----VISQFRAHTSPISALCFDRSGTLLVTASIHG 407 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~----~l~~~~aH~~~Is~laFspdG~lLaTaS~dG 407 (627)
..+..++.|++|++.... .......|...|.+++|+|+|++||+++.||
T Consensus 111 ---------------------------~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~ 163 (371)
T d1k8kc_ 111 ---------------------------AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163 (371)
T ss_dssp ---------------------------EEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ---------------------------eeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence 012357888998876553 2445668999999999999999999999999
Q ss_pred CEEEEEeCCCCCCCCCCCCCccccCCCCc-eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeee
Q 046828 408 NNINIFRIMPSSSKGRSGSASQTYDWTSS-HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 408 t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~-~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~ 486 (627)
+ |+||++...... ............. ...+.+. .++. ..|.+++|+||+++|++++.||+|++|++........
T Consensus 164 ~-v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~ 238 (371)
T d1k8kc_ 164 K-CRIFSAYIKEVE--ERPAPTPWGSKMPFGELMFES-SSSC-GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238 (371)
T ss_dssp C-EEEEECCCTTTS--CCCCCBTTBSCCCTTCEEEEC-CCCS-SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred E-EEEEeeccCccc--cccccccccccccceeeeeec-cCcc-CcEEEEEeecccccccccccCCcceEEeeecccceee
Confidence 8 799998521100 0000000000000 1233333 3443 3599999999999999999999999999987666666
Q ss_pred cccccccc
Q 046828 487 LQIQNSHV 494 (627)
Q Consensus 487 ~~~h~s~v 494 (627)
+..|...+
T Consensus 239 ~~~~~~~v 246 (371)
T d1k8kc_ 239 LASETLPL 246 (371)
T ss_dssp EECSSCCE
T ss_pred eecccccc
Confidence 66665433
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=7e-17 Score=164.51 Aligned_cols=107 Identities=18% Similarity=0.342 Sum_probs=87.9
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..++.|++||+.+++....+..|..+|.+++|+++|.+|++++.+|+ |++||+. ++ ..+.
T Consensus 160 ~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~-v~i~d~~-------~~------------~~~~ 219 (337)
T d1gxra_ 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLR-------EG------------RQLQ 219 (337)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-------TT------------EEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-------cc------------eeec
Confidence 46789999999999999999999999999999999999999999997 7999986 23 2333
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
.+. + ...|.+++|+|++++|++++.||.+++|+++... ......|..
T Consensus 220 ~~~--~-~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~ 266 (337)
T d1gxra_ 220 QHD--F-TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHES 266 (337)
T ss_dssp EEE--C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEEECCCSS
T ss_pred ccc--c-ccceEEEEEcccccccceeccccccccccccccc-ccccccccc
Confidence 332 2 3459999999999999999999999999997543 333444543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=3.7e-17 Score=166.73 Aligned_cols=244 Identities=15% Similarity=0.116 Sum_probs=158.3
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCc--EEEEecCCCC--CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNG--FQVLDVEDAT--NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G--~qVWdv~~~~--~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
.+.++..+.|+.. .+ .|+.+..+. ++.||..... .+.++...+..+|.++++.|... +
T Consensus 16 ~~~~~t~l~~~~~------~~-~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~------g----- 77 (325)
T d1pgua1 16 QRNFTTHLSYDPT------TN-AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG------S----- 77 (325)
T ss_dssp CTTCCCCCEEETT------TT-EEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTT------C-----
T ss_pred CCCCeEEEEECCC------CC-EEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCC------C-----
Confidence 3445666677642 13 445555555 4556654432 22333333456799999987541 1
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe---------cCCeEEEEEe
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR---------FRSTVYMVRC 207 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~---------f~s~V~sV~~ 207 (627)
.+||. + + .+++|+|||+..++....++ +..+|.+|.+
T Consensus 78 ~~las-g-s--------------------------------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 123 (325)
T d1pgua1 78 QYLCS-G-D--------------------------------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123 (325)
T ss_dssp CEEEE-E-E--------------------------------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE
T ss_pred CEEEE-E-e--------------------------------CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEE
Confidence 34432 1 1 24789999998765433322 3458999999
Q ss_pred cC--cEEEEEeC---CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCC
Q 046828 208 SP--RIVAVGLA---AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQ 282 (627)
Q Consensus 208 s~--~~LaV~~~---~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q 282 (627)
++ +.|+++.. ..+++|+..+++.+.++.+|..+ +.. +++.+..+.
T Consensus 124 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------------v~~-------~~~~~~~~~---------- 173 (325)
T d1pgua1 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR-------------INA-------CHLKQSRPM---------- 173 (325)
T ss_dssp CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSC-------------EEE-------EEECSSSSC----------
T ss_pred CCCCCccceeeccccceEEEEeecccccceeeeecccc-------------ccc-------ccccccccc----------
Confidence 87 56665543 35999999999988888766543 222 333322100
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCC
Q 046828 283 SLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTD 362 (627)
Q Consensus 283 ~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~ 362 (627)
..+ .++
T Consensus 174 ------------------------------------------~~~--------------------------------~~~ 179 (325)
T d1pgua1 174 ------------------------------------------RSM--------------------------------TVG 179 (325)
T ss_dssp ------------------------------------------EEE--------------------------------EEE
T ss_pred ------------------------------------------eEE--------------------------------Eee
Confidence 000 234
Q ss_pred CCCeEEEEECCCCeEEEEe---ccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIVSRSVISQF---RAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~---~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.||.|++||....+....+ ..|...|.+++|+|+ |.+|++++.||+ |+|||+. ++ .
T Consensus 180 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~-------~~------------~ 239 (325)
T d1pgua1 180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGK-------SG------------E 239 (325)
T ss_dssp TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETT-------TC------------C
T ss_pred cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeec-------cc------------c
Confidence 6899999999988765554 467788999999996 799999999998 8999986 33 2
Q ss_pred EEEEEeecCCcCcEEEEEEc---cCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFS---HYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFS---pDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.+..+ +++.. .|.++.|+ +|+++|++++.|++|+||++....
T Consensus 240 ~~~~l-~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 240 FLKYI-EDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 284 (325)
T ss_dssp EEEEC-CBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred ccccc-ccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence 45555 45543 24444444 689999999999999999997543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=9.6e-16 Score=152.02 Aligned_cols=258 Identities=15% Similarity=0.189 Sum_probs=162.3
Q ss_pred CCCCcEE-EEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVL-WSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~-wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.|.+.|+ .+.||. +.+++.+.|+.++|||+.+.. ....+..|.++|..+++.|. .+
T Consensus 10 GH~~~vitc~~~~~--------~~l~tgs~Dg~i~vWd~~~~~-~~~~l~~H~~~V~~l~~s~~--------------~~ 66 (355)
T d1nexb2 10 GHMTSVITCLQFED--------NYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHG--------------GI 66 (355)
T ss_dssp CCSSSCEEEEEEET--------TEEEEEETTTEEEEEETTTTE-EEEEEECCSSCEEEEEEETT--------------TE
T ss_pred CcCCCcEEEEEECC--------CEEEEEeCCCeEEEEECCCCc-EEEEEECCCCCEEEEEEcCC--------------CE
Confidence 3667764 456651 567778888899999999755 34455678999999998642 34
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC---eEEEEEecC--cEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS---TVYMVRCSP--RIVA 213 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~--~~La 213 (627)
|+..+ .+++|++|++...+.+....... .+..+...+ +.++
T Consensus 67 l~s~s----------------------------------~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (355)
T d1nexb2 67 LVSGS----------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 112 (355)
T ss_dssp EEEEE----------------------------------TTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEE
T ss_pred EEEEe----------------------------------cccccccccccccccccccccccccccccccccccccceee
Confidence 44322 13679999999999888776433 233344444 5566
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++. ++.|++||+.+.+........... .... ........
T Consensus 113 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~---------------~~~~------~~~~~~~~------------------- 152 (355)
T d1nexb2 113 TGSRDNTLHVWKLPKESSVPDHGEEHDY---------------PLVF------HTPEENPY------------------- 152 (355)
T ss_dssp EEETTSEEEEEECCC-----------CC---------------CEEE------SCTTTCTT-------------------
T ss_pred eecCCCcEEEEEccCCceecccccccee---------------ccce------eccccccc-------------------
Confidence 664 568999999887654333221100 0000 00000000
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
.+ .. ...+... +.... ++ +.+ ...+..++.|++||+
T Consensus 153 -------~~-------------~~-~~~~~~~--v~~~~----~~--------------~~~---~~~~~~d~~i~~~d~ 188 (355)
T d1nexb2 153 -------FV-------------GV-LRGHMAS--VRTVS----GH--------------GNI---VVSGSYDNTLIVWDV 188 (355)
T ss_dssp -------EE-------------EE-EECCSSC--EEEEE----EE--------------TTE---EEEEETTSCEEEEET
T ss_pred -------ee-------------ee-eeecccc--ccccc----cc--------------cce---eeeecccceeeeeec
Confidence 00 00 0000000 00000 00 000 012457899999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+++.+..+.+|...+.++.|+|++.++++++.||+ |+|||+. ++ ..+..+ ++++ ..|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~-------~~------------~~~~~~-~~h~-~~v 246 (355)
T d1nexb2 189 AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLE-------NG------------ELMYTL-QGHT-ALV 246 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETT-------TC------------CEEEEE-CCCS-SCC
T ss_pred ccccceeeeeccccccccccccccceeeecccccce-EEeeecc-------cc------------cccccc-cccc-ccc
Confidence 999999999999999999999999999999999998 7999986 23 245554 5665 358
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.+++|++ ++|++++.||+|++|+++...
T Consensus 247 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 247 GLLRLSD--KFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp CEEEECS--SEEEEECTTSEEEEEETTTCC
T ss_pred ccccccc--ceeeeeecccccccccccccc
Confidence 9998864 699999999999999997643
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.4e-16 Score=157.28 Aligned_cols=225 Identities=16% Similarity=0.179 Sum_probs=137.5
Q ss_pred CcEEEEEECCCCceEEEEec-CCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEcCCCC--------C----C--
Q 046828 179 PTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLTYPVP--------H----F-- 242 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~--------~----~-- 242 (627)
+++|+|||+++++++++++. ...|+++++++.+|+++. ++.+++|+....+........... . .
T Consensus 36 Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (342)
T d2ovrb2 36 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115 (342)
T ss_dssp TSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceecccccceeEeeeeccccccccccc
Confidence 36799999999999999984 559999999998888876 457999988765543322211000 0 0
Q ss_pred --------CCCCC-----cCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 046828 243 --------GGQGT-----SGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESS 309 (627)
Q Consensus 243 --------~~~g~-----~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~ 309 (627)
...+. ................++.+..+..+.++... ..
T Consensus 116 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~----------------------------~~ 167 (342)
T d2ovrb2 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE----------------------------TE 167 (342)
T ss_dssp TSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG----------------------------GT
T ss_pred ceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc----------------------------cc
Confidence 00000 00000122345666677777665544332110 00
Q ss_pred hhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeE
Q 046828 310 KQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPIS 389 (627)
Q Consensus 310 k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is 389 (627)
+.+ ..+ .++........ ++ +. ....+..||.|++||+..++.+..+.+|...|.
T Consensus 168 ~~~-~~~--~~~~~~~~~~~------~~--------------~~---~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~ 221 (342)
T d2ovrb2 168 TCL-HTL--QGHTNRVYSLQ------FD--------------GI---HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 221 (342)
T ss_dssp EEE-EEE--CCCSSCEEEEE------EC--------------SS---EEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred eee-EEE--cCccccccccc------CC--------------CC---EEEEEeCCCeEEEeecccceeeeEeccccccee
Confidence 000 000 01100000000 00 11 112456899999999999999999999999999
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC--cEEEEEEccCCCEEEEE
Q 046828 390 ALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA--VIQDICFSHYSQWIAIV 467 (627)
Q Consensus 390 ~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a--~I~sIaFSpDg~~Las~ 467 (627)
+++|+ +.+|++++.||+ |+|||+. . . .....+ .++... .+.+++| ++++++++
T Consensus 222 ~~~~~--~~~l~s~s~d~~-i~iwd~~-~------~------------~~~~~~-~~~~~~~~~~~~~~~--~~~~~~s~ 276 (342)
T d2ovrb2 222 GMELK--DNILVSGNADST-VKIWDIK-T------G------------QCLQTL-QGPNKHQSAVTCLQF--NKNFVITS 276 (342)
T ss_dssp EEEEE--TTEEEEEETTSC-EEEEETT-T------C------------CEEEEE-CSTTSCSSCEEEEEE--CSSEEEEE
T ss_pred EEecC--CCEEEEEcCCCE-EEEEecc-c------c------------cccccc-cccceeeeceeeccc--CCCeeEEE
Confidence 88886 469999999998 8999985 1 1 133333 333322 3555555 56799999
Q ss_pred eCCCeEEEEEcCCCC
Q 046828 468 SSRGTCHIFVLTPFG 482 (627)
Q Consensus 468 S~dgTvhIw~i~~~g 482 (627)
+.||+|+||+++...
T Consensus 277 s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 277 SDDGTVKLWDLKTGE 291 (342)
T ss_dssp ETTSEEEEEETTTCC
T ss_pred cCCCEEEEEECCCCC
Confidence 999999999997643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=2.9e-17 Score=161.55 Aligned_cols=293 Identities=11% Similarity=0.065 Sum_probs=171.9
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.+.++|.|.-+.|... .+.+++.+.|+.++|||++......++.. .|.++|.++.+.|.-
T Consensus 7 ~~~h~d~I~~l~fsp~------~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~------------ 68 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPS------KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT------------ 68 (342)
T ss_dssp SSCCSSCEEEEEEEGG------GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS------------
T ss_pred CCCCCCCEEEEEEeCC------CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC------------
Confidence 4567889999999742 26677788899999999988665555543 588999999998742
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eE---EEEEecCcE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TV---YMVRCSPRI 211 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V---~sV~~s~~~ 211 (627)
+.++++++ .+++|++|++..+.....+.... .+ .........
T Consensus 69 -~~~l~sg~---------------------------------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (342)
T d1yfqa_ 69 -DLQIYVGT---------------------------------VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK 114 (342)
T ss_dssp -SEEEEEEE---------------------------------TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTE
T ss_pred -CCEEEEcc---------------------------------cccceeeeeccccccccccccccccccccccccccccc
Confidence 22232221 13679999999998887776433 22 222223455
Q ss_pred EEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 212 VAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 212 LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
++++ .++.+++||+.+.+............. .........+......++.+..+..+..+.....+
T Consensus 115 ~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-------- 181 (342)
T d1yfqa_ 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-----TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE-------- 181 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEESCSSS-----SSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCT--------
T ss_pred ccccccccccceeeccccccceeeeccccccc-----ccceeeeeeeeccCCceeeecCCCcEEEEecccCc--------
Confidence 5554 566899999877654444332111000 00000011233344566666655443322110000
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcc-eeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMG-YKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g-~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
....-........ .... ..+ + . .+. ....+..+|.+.+
T Consensus 182 --------------------~~~~~~~~~~~~~~~~~~-~~~----~---------~----~~~---~~~~~s~dg~~~v 220 (342)
T d1yfqa_ 182 --------------------DDNGTIEESGLKYQIRDV-ALL----P---------K----EQE---GYACSSIDGRVAV 220 (342)
T ss_dssp --------------------TCCCEEEECSCSSCEEEE-EEC----S---------G----GGC---EEEEEETTSEEEE
T ss_pred --------------------ccceeeeecccccceeee-Eee----c---------C----CCC---EEEeecCCCeEEE
Confidence 0000000000000 0000 000 0 0 000 0113457899999
Q ss_pred EECCCCe---------EEE------EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 370 KDIVSRS---------VIS------QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 370 wD~~s~~---------~l~------~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
|++.... ... ....|..+|.+|+|+|+|.+||||+.||+ |+|||+. ++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~-------~~--------- 283 (342)
T d1yfqa_ 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQ-------TR--------- 283 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETT-------TT---------
T ss_pred EEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECC-------CC---------
Confidence 9876431 111 12356778999999999999999999998 7999986 23
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.++.++.+.+ .+..++|+||+++||+++.|+++++|...
T Consensus 284 ---~~l~~~~~~~---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 284 ---KKIKNFAKFN---EDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---EEEEECCCCS---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ---cEEEEecCCC---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 3666665443 24568899999999999999998888653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=3.2e-16 Score=154.53 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=83.5
Q ss_pred CCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
..++.|++||+...+....+. .|..+|.+|+|+|+|++|++++.+|. |++||+. ++ ..+
T Consensus 138 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~-------~~------------~~~ 197 (287)
T d1pgua2 138 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQ-------SR------------EVK 197 (287)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TT------------EEE
T ss_pred cccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeec-------cc------------ccc
Confidence 345689999998776666655 57889999999999999999999998 7999985 22 123
Q ss_pred EEEeecCCcCcEEEEEEccC----------CCEEEEEeCCCeEEEEEcCCCCCe-eeccccccc
Q 046828 441 YKLHRGMTSAVIQDICFSHY----------SQWIAIVSSRGTCHIFVLTPFGGE-TVLQIQNSH 493 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpD----------g~~Las~S~dgTvhIw~i~~~gg~-~~~~~h~s~ 493 (627)
.....+|+ +.|.+++|+|+ +++||+++.|++|+||++...+.. ..+..|...
T Consensus 198 ~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~ 260 (287)
T d1pgua2 198 TSRWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260 (287)
T ss_dssp ECCSCCCS-SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred cccccccc-cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC
Confidence 33334554 46999999874 568999999999999999764332 234455443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.75 E-value=3.6e-16 Score=157.20 Aligned_cols=187 Identities=13% Similarity=0.081 Sum_probs=135.6
Q ss_pred EEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCccc
Q 046828 83 VLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGL 162 (627)
Q Consensus 83 vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~ 162 (627)
.++.+.++.+.|||++. +.+.++ .|.+.|+.+.+.|.. .+|++++.|+
T Consensus 17 ~~a~~~~g~v~v~d~~~-~~~~~~--~~~~~v~~~~~spDg-------------~~l~~~~~~~---------------- 64 (360)
T d1k32a3 17 LIAFVSRGQAFIQDVSG-TYVLKV--PEPLRIRYVRRGGDT-------------KVAFIHGTRE---------------- 64 (360)
T ss_dssp CEEEEETTEEEEECTTS-SBEEEC--SCCSCEEEEEECSSS-------------EEEEEEEETT----------------
T ss_pred EEEEEECCeEEEEECCC-CcEEEc--cCCCCEEEEEECCCC-------------CEEEEEEcCC----------------
Confidence 44556678899999986 334443 478889999988753 5666554211
Q ss_pred ccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCC
Q 046828 163 VRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPV 239 (627)
Q Consensus 163 ~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~ 239 (627)
...|++||+++++......+...|.+++|++ +.|+++. +..+++||+.+++....+..+..
T Consensus 65 ----------------g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (360)
T d1k32a3 65 ----------------GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA 128 (360)
T ss_dssp ----------------EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred ----------------CCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc
Confidence 1469999999998876666778999999998 6777765 55799999999998877766543
Q ss_pred CCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccee
Q 046828 240 PHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLI 317 (627)
Q Consensus 240 ~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~ 317 (627)
. ...++++| ++|||+......
T Consensus 129 ~-------------~~~~~~spdg~~la~~~~~~~~-------------------------------------------- 151 (360)
T d1k32a3 129 M-------------ITDFTISDNSRFIAYGFPLKHG-------------------------------------------- 151 (360)
T ss_dssp C-------------CCCEEECTTSCEEEEEEEECSS--------------------------------------------
T ss_pred c-------------ccchhhccceeeeeeecccccc--------------------------------------------
Confidence 2 22355544 788876522100
Q ss_pred ecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCC
Q 046828 318 NLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSG 397 (627)
Q Consensus 318 ~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG 397 (627)
...+..++.+++||+.+++.. .+..|...+..++|+|||
T Consensus 152 ----------------------------------------~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg 190 (360)
T d1k32a3 152 ----------------------------------------ETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADS 190 (360)
T ss_dssp ----------------------------------------TTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTS
T ss_pred ----------------------------------------ceeeccccceeeeccccCcee-eecccccccccccccCCC
Confidence 002346678999999987654 555677889999999999
Q ss_pred CEEEEEeCCCCEEEEEeCC
Q 046828 398 TLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 398 ~lLaTaS~dGt~I~Vwdi~ 416 (627)
++|++++.++. +++|+..
T Consensus 191 ~~l~~~s~~~~-~~~~d~~ 208 (360)
T d1k32a3 191 KNLYYLSYRSL-DPSPDRV 208 (360)
T ss_dssp CEEEEEESCCC-CCEECSS
T ss_pred CEEEEEeCCCc-eEccccc
Confidence 99999999987 6888753
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=4.3e-16 Score=154.60 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=73.9
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..||.|+|||+.++..+..+++|..+|.+++|+ +++|++++.||+ |++||+. ++ .+.+
T Consensus 220 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~-i~iwd~~-------~~------------~~~~ 277 (355)
T d1nexb2 220 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDAN-------DY------------SRKF 277 (355)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSE-EEEEETT-------TC------------CEEE
T ss_pred cccceEEeeeccccccccccccccccccccccc--cceeeeeecccc-ccccccc-------cc------------ceec
Confidence 468999999999999999999999999999997 579999999997 8999985 22 1333
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..+ ....+...+|++++++|++++ ||+|+||+++..
T Consensus 278 ~~~---~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg 313 (355)
T d1nexb2 278 SYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 313 (355)
T ss_dssp EEE---CTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred ccc---cCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCC
Confidence 332 322233346788888887765 899999999753
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=9.7e-16 Score=159.75 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=65.0
Q ss_pred CCeEEEEECCCCeEEEEec-------------cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 364 AGMVVVKDIVSRSVISQFR-------------AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~-------------aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
.+.|+|||+++++.+..+. +|...|.+|+|+|||++|||+|.||+ |+|||+. +|
T Consensus 255 ~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~-v~vWd~~-------~g----- 321 (393)
T d1sq9a_ 255 FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVK-------TK----- 321 (393)
T ss_dssp EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETT-------TT-----
T ss_pred cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE-EEEEECC-------CC-----
Confidence 3568999999988777764 79999999999999999999999998 8999996 34
Q ss_pred cCCCCceeEEEEEeecCCcCc---EEEEEEccCCCEEEEE
Q 046828 431 YDWTSSHVHLYKLHRGMTSAV---IQDICFSHYSQWIAIV 467 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~---I~sIaFSpDg~~Las~ 467 (627)
.+++.| +||.... ...++|++++..++++
T Consensus 322 -------~~~~~l-~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 322 -------ERITTL-NMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp -------EEEEEE-ECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred -------CEEEEE-CCcCCcccCCccEEEECCCCCEEEEc
Confidence 366666 6775421 2357788888777543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.6e-14 Score=139.05 Aligned_cols=212 Identities=13% Similarity=0.200 Sum_probs=136.3
Q ss_pred CcEEEEEECCCCceEEEEec-CCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccce
Q 046828 179 PTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~ 256 (627)
+++|+|||+++++++++|+. ...|.+|.+++++|+++. ++.|++||+.+++........... ...
T Consensus 34 Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~-------------~~~ 100 (293)
T d1p22a2 34 DNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-------------VLH 100 (293)
T ss_dssp SSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-------------EEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccc-------------ccc
Confidence 37799999999999999984 569999999999998886 457999999998876665443221 111
Q ss_pred eeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccC
Q 046828 257 MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIP 336 (627)
Q Consensus 257 iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p 336 (627)
.......++.+.....+.++...... ..........+........
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~v~~~~------- 145 (293)
T d1p22a2 101 LRFNNGMMVTCSKDRSIAVWDMASPT----------------------------DITLRRVLVGHRAAVNVVD------- 145 (293)
T ss_dssp EECCTTEEEEEETTSCEEEEECSSSS----------------------------CCEEEEEECCCSSCEEEEE-------
T ss_pred ccccccceeecccccceeEeeccccc----------------------------cccccccccccccccccce-------
Confidence 22223455555433322221100000 0000000000000000000
Q ss_pred CCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 337 DGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 337 ~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+... .....+.|+.|++||+.+++.+..+.+|...|..+.|+ +..|++++.||+ |+|||+.
T Consensus 146 ------------~~~~----~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~ 206 (293)
T d1p22a2 146 ------------FDDK----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIE 206 (293)
T ss_dssp ------------EETT----EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETT
T ss_pred ------------eccc----ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecc
Confidence 0000 00134578999999999999999999999999888876 678999999998 7999986
Q ss_pred CCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 417 p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
++ ..+... .++.. .|. .+++++++|++++.||+|+||++..
T Consensus 207 -------~~------------~~~~~~-~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 207 -------CG------------ACLRVL-EGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp -------TC------------CEEEEE-CCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHH
T ss_pred -------cc------------eeeeee-cccce-eee--eccccceEEEEEcCCCEEEEEECCC
Confidence 22 133333 45443 344 5778999999999999999999864
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=1.4e-14 Score=141.95 Aligned_cols=265 Identities=14% Similarity=0.101 Sum_probs=150.3
Q ss_pred ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEE
Q 046828 103 VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAV 182 (627)
Q Consensus 103 ~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV 182 (627)
+.|++..|+..|+.|++.|.. ++||+.+ .+++|
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~-------------~~L~s~s----------------------------------~Dg~v 35 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSK-------------SLLLITS----------------------------------WDGSL 35 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGG-------------TEEEEEE----------------------------------TTSEE
T ss_pred eEEcCCCCCCCEEEEEEeCCC-------------CEEEEEE----------------------------------CCCeE
Confidence 456777888889999998753 6776533 24789
Q ss_pred EEEECCCCce----EEEEecCCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 183 RFYSLRSHNY----VHVLRFRSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 183 ~lwdl~t~~~----V~tL~f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+|||+.++.. ...+.+..+|.+|+|++ .+|+++. ++.|++||..+.+.......+.... . ..
T Consensus 36 ~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~-------~---~~ 105 (342)
T d1yfqa_ 36 TVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL-------G---IC 105 (342)
T ss_dssp EEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCS-------C---EE
T ss_pred EEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccc-------c---cc
Confidence 9999977654 33445778999999975 4777775 5689999999887665554332210 0 01
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
.....+...++.++.+..+.+|.. +..+.............
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~wd~----------------------------~~~~~~~~~~~~~~~~~----------- 146 (342)
T d1yfqa_ 106 RICKYGDDKLIAASWDGLIEVIDP----------------------------RNYGDGVIAVKNLNSNN----------- 146 (342)
T ss_dssp EEEEETTTEEEEEETTSEEEEECH----------------------------HHHTTBCEEEEESCSSS-----------
T ss_pred cccccccccccccccccccceeec----------------------------cccccceeeeccccccc-----------
Confidence 112223456666554443332210 00000000000000000
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE---EEEeccCCCCeEEEE-ECCCCCEEEEEeCCCCEE
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV---ISQFRAHTSPISALC-FDRSGTLLVTASIHGNNI 410 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~---l~~~~aH~~~Is~la-FspdG~lLaTaS~dGt~I 410 (627)
.......... . ..+. ....+..+|.|++||+...+. ......+...+.+.+ +..++..+++++.+|. +
T Consensus 147 -~~~~~~~~~~--~-~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~ 218 (342)
T d1yfqa_ 147 -TKVKNKIFTM--D-TNSS---RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-V 218 (342)
T ss_dssp -SSSCCCEEEE--E-ECSS---EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-E
T ss_pred -ccceeeeeee--e-ccCC---ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-E
Confidence 0000000000 0 0000 012346789999999977643 223334444555544 4567899999999997 7
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC-----CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM-----TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~-----t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.+|+....... ............+.. ....|.+|+|+|++++||+++.||+|+||++....
T Consensus 219 ~v~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~ 284 (342)
T d1yfqa_ 219 AVEFFDDQGDD-----------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EEEECCTTCCS-----------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred EEEEecCCcce-----------eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence 99988632211 000001222222211 12348999999999999999999999999998643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=1.8e-12 Score=128.04 Aligned_cols=98 Identities=7% Similarity=0.017 Sum_probs=77.3
Q ss_pred CCCCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 362 DIAGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
..++.+.+||+.+++... .+..|...+..++++|++.+++.++ ++ |++||+. ++ ..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-i~v~d~~-------~~------------~~~ 273 (337)
T d1pbyb_ 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--NV-LESFDLE-------KN------------ASI 273 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--SE-EEEEETT-------TT------------EEE
T ss_pred ccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc--cc-EEEEECC-------CC------------cEE
Confidence 456789999999987544 4667888899999999999998876 44 8999986 23 244
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.++.-+ ..+.+|+|||||++|++++.+|+|+||++......
T Consensus 274 ~~~~~~---~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 274 KRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred EEEcCC---CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 444322 34799999999999999999999999999875433
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.52 E-value=4.3e-13 Score=134.25 Aligned_cols=171 Identities=8% Similarity=0.010 Sum_probs=124.6
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEE-eCC--eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVG-LAA--QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~-~~~--~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+.|.+||+++++.++ +.+...|.+++|++ +.|+++ .++ .|++||+.+++.. .+..+... +
T Consensus 24 g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~-------------v 88 (360)
T d1k32a3 24 GQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGN-------------V 88 (360)
T ss_dssp TEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCS-------------E
T ss_pred CeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCce-------------E
Confidence 469999999888765 46777999999998 566654 444 5999999988754 33333321 2
Q ss_pred ceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
..++++| ++|++
T Consensus 89 ~~~~~spdg~~l~~------------------------------------------------------------------ 102 (360)
T d1k32a3 89 FAMGVDRNGKFAVV------------------------------------------------------------------ 102 (360)
T ss_dssp EEEEECTTSSEEEE------------------------------------------------------------------
T ss_pred Eeeeecccccccce------------------------------------------------------------------
Confidence 2233322 22222
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC----
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN---- 408 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt---- 408 (627)
+..++.+++||+.+++....+..|...+.+++|+|||++||.++.+++
T Consensus 103 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~ 154 (360)
T d1k32a3 103 ----------------------------ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 154 (360)
T ss_dssp ----------------------------EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred ----------------------------eccccccccccccccceeeeeecccccccchhhccceeeeeeecccccccee
Confidence 235678999999999999999999999999999999999997654321
Q ss_pred -----EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 409 -----NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 409 -----~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+++||+. .+ ....+..+ ...+..++|+|||++|+.++.|+++++|+....
T Consensus 155 ~~~~~~~~v~d~~-------~~-------------~~~~~~~~--~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 155 GYVMQAIHVYDME-------GR-------------KIFAATTE--NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp SCCEEEEEEEETT-------TT-------------EEEECSCS--SSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred eccccceeeeccc-------cC-------------ceeeeccc--ccccccccccCCCCEEEEEeCCCceEccccccc
Confidence 37899985 22 33334333 235889999999999999999999999997654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.50 E-value=3.5e-11 Score=117.09 Aligned_cols=213 Identities=16% Similarity=0.153 Sum_probs=128.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEE-e-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVG-L-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~-~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
++|++||+++++.++++.....+..+.+++ +.++++ . +..+.+||..+++....+..+..+ .
T Consensus 54 ~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 119 (301)
T d1l0qa2 54 NDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP--------------L 119 (301)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE--------------E
T ss_pred CEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeeeccccccc--------------e
Confidence 679999999999999999877888999986 445444 3 347999999999988887665432 1
Q ss_pred eeeEcC--ceEEEcCC-CCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 256 PMAVGP--RWLAYASN-NPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 256 ~iAl~~--r~LAy~~~-~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
.+++.+ +.+.+... +..+..+ .... ......+. ...+...+.
T Consensus 120 ~~~~~~dg~~~~~~~~~~~~~~~~----------------------------~~~~-~~~~~~~~--~~~~~~~~~---- 164 (301)
T d1l0qa2 120 GLALSPDGKKLYVTNNGDKTVSVI----------------------------NTVT-KAVINTVS--VGRSPKGIA---- 164 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEE----------------------------ETTT-TEEEEEEE--CCSSEEEEE----
T ss_pred EEEeecCCCeeeeeeccccceeee----------------------------eccc-cceeeecc--cCCCceEEE----
Confidence 234433 44443321 1111000 0000 00000000 000000000
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--CEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--NNI 410 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--t~I 410 (627)
..|++ ..+. ......+.+.+|+....+....+..+. .+..++|+++|..++.+..++ ..|
T Consensus 165 -~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~v~~~~~~~~~v 226 (301)
T d1l0qa2 165 -VTPDG-------------TKVY---VANFDSMSISVIDTVTNSVIDTVKVEA-APSGIAVNPEGTKAYVTNVDKYFNTV 226 (301)
T ss_dssp -ECTTS-------------SEEE---EEETTTTEEEEEETTTTEEEEEEECSS-EEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred -eeccc-------------ccee---eecccccccccccccceeeeecccccC-Ccceeeccccccccccccccceeeee
Confidence 00111 0000 122356788899998888777766554 467789999999988765442 238
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEE-EEEeCCCeEEEEEcCCC
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWI-AIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~L-as~S~dgTvhIw~i~~~ 481 (627)
++||+. ++ ..+..+.-| ..+.+|+|||||++| ++++.+++|+||+++..
T Consensus 227 ~v~D~~-------t~------------~~~~~~~~~---~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 227 SMIDTG-------TN------------KITARIPVG---PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp EEEETT-------TT------------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred eeeecC-------CC------------eEEEEEcCC---CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 999985 23 234444322 348999999999987 46677999999999764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.50 E-value=1.3e-12 Score=129.58 Aligned_cols=99 Identities=6% Similarity=-0.002 Sum_probs=77.8
Q ss_pred CCCCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 362 DIAGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
..++.+.+||+.++.... .+..|...+..+.+++++.+++....+ + |++||+. ++ ..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-v~v~d~~-------~~------------~~~ 285 (346)
T d1jmxb_ 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R-LAKYDLK-------QR------------KLI 285 (346)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES-E-EEEEETT-------TT------------EEE
T ss_pred cCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCC-e-EEEEECC-------CC------------cEE
Confidence 456779999999987654 455788889999999999999887765 4 8999985 23 244
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
..+..|+ .+.+|+|||||++|++++.+|+|+|||+......
T Consensus 286 ~~~~~~~---~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 286 KAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326 (346)
T ss_dssp EEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEEcCCC---CEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence 4444343 4889999999999999999999999999865433
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.49 E-value=8e-12 Score=131.48 Aligned_cols=111 Identities=6% Similarity=0.062 Sum_probs=77.8
Q ss_pred CCCCCeEEEEECCCC-------eEEEEeccCCCCeEEEEECCCCCEEEE-------EeCCCCEEEEEeCCCCCCCCCCCC
Q 046828 361 TDIAGMVVVKDIVSR-------SVISQFRAHTSPISALCFDRSGTLLVT-------ASIHGNNINIFRIMPSSSKGRSGS 426 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~-------~~l~~~~aH~~~Is~laFspdG~lLaT-------aS~dGt~I~Vwdi~p~~~~~~~g~ 426 (627)
...++.|.+|+.... +.+..+.+|...+.+++|+|||++|+. ++.+++ |+|||+. ++.
T Consensus 272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~-------t~~ 343 (426)
T d1hzua2 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLK-------NLD 343 (426)
T ss_dssp CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETT-------CTT
T ss_pred cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECC-------CCC
Confidence 346788999887653 678899999999999999999999994 556777 8999986 221
Q ss_pred CccccCCCCceeEEEEEe--ecC--CcCcEEEEEEccCCCEEEEE-----eCCCeEEEEEcCCCCCeeecc
Q 046828 427 ASQTYDWTSSHVHLYKLH--RGM--TSAVIQDICFSHYSQWIAIV-----SSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 427 ~~~~~~~~~~~~~l~~l~--rG~--t~a~I~sIaFSpDg~~Las~-----S~dgTvhIw~i~~~gg~~~~~ 488 (627)
.. ..+.... .++ ....|..++|||||++|+++ +.+|+|+|||.........+.
T Consensus 344 ~~---------~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~ 405 (426)
T d1hzua2 344 AK---------YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 405 (426)
T ss_dssp SC---------CEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cC---------eEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence 00 0111100 011 12348999999999988554 468999999988765433333
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.26 E-value=1.4e-09 Score=105.54 Aligned_cols=175 Identities=11% Similarity=0.076 Sum_probs=126.5
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+++|.+||+++++.++++++...+..|++++ ++|+++. +++|++||+.+++.+.++..+..+
T Consensus 11 ~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~-------------- 76 (301)
T d1l0qa2 11 SDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-------------- 76 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE--------------
T ss_pred CCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccc--------------
Confidence 3789999999999999999988889999998 5665543 568999999999998887654322
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
+.+++..+... ..+
T Consensus 77 -------~~~~~~~~~~~----------------------------------------------------~~~------- 90 (301)
T d1l0qa2 77 -------QGVAVSPDGKQ----------------------------------------------------VYV------- 90 (301)
T ss_dssp -------EEEEECTTSSE----------------------------------------------------EEE-------
T ss_pred -------ccccccccccc----------------------------------------------------ccc-------
Confidence 33444432110 000
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
....++.+.+||..+++.+..+..+. ...+++|+|+|..++.+...+..+.+|+
T Consensus 91 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~ 144 (301)
T d1l0qa2 91 -------------------------TNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (301)
T ss_dssp -------------------------EETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -------------------------cccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeeeeccccceeeee
Confidence 12356789999999999888887654 5688999999999887776666689999
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCCC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTPF 481 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~~ 481 (627)
.. ++ ..+..+. .. ..+..++|++|++++++++.+ +.+.+|.....
T Consensus 145 ~~-------~~------------~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (301)
T d1l0qa2 145 TV-------TK------------AVINTVS-VG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (301)
T ss_dssp TT-------TT------------EEEEEEE-CC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred cc-------cc------------ceeeecc-cC--CCceEEEeeccccceeeecccccccccccccce
Confidence 75 22 1333332 22 247899999999999888766 55667766544
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=5.5e-10 Score=118.49 Aligned_cols=181 Identities=9% Similarity=0.003 Sum_probs=123.4
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCcee--EEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESK--FSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~--~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
+++|.|||++|+++++++..+..+.+|+||+ ++|+++. ++.|.+||+.|++.. ..+....
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~--------------- 105 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--------------- 105 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---------------
T ss_pred CCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC---------------
Confidence 3789999999999999999888899999998 7888876 568999999988743 3332211
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+++-++++.. .+|++ . .+ .+
T Consensus 106 ------~~~~~~~s~~-----------------------~SpDG-~-----------~l-------------~v------ 125 (432)
T d1qksa2 106 ------EARSIETSKM-----------------------EGWED-K-----------YA-------------IA------ 125 (432)
T ss_dssp ------EEEEEEECCS-----------------------TTCTT-T-----------EE-------------EE------
T ss_pred ------CCCCeEEecc-----------------------cCCCC-C-----------EE-------------EE------
Confidence 1233333321 00110 0 00 00
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCC-----------CCeEEEEECCCCCEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHT-----------SPISALCFDRSGTLLVT 402 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~-----------~~Is~laFspdG~lLaT 402 (627)
....++.|+|||..+++++..+..|. ....++.|+|+|+.++.
T Consensus 126 --------------------------s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v 179 (432)
T d1qksa2 126 --------------------------GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179 (432)
T ss_dssp --------------------------EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred --------------------------EcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEE
Confidence 12357899999999999988887653 34678899999987654
Q ss_pred -EeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCC
Q 046828 403 -ASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTP 480 (627)
Q Consensus 403 -aS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~ 480 (627)
.+.+++ |.+||.. . +. ...+.++.-| ..+.+++|+|||+++++++.+ +++.+++...
T Consensus 180 s~~~~~~-i~~~d~~-~------~~----------~~~~~~i~~g---~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~ 238 (432)
T d1qksa2 180 NVKETGK-ILLVDYT-D------LN----------NLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238 (432)
T ss_dssp EETTTTE-EEEEETT-C------SS----------EEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred EEccCCe-EEEEEcc-C------CC----------cceEEEEccc---CccccceECCCCCEEEEeccccceEEEeeccc
Confidence 555665 7999875 1 11 0133444322 348999999999988877764 4788888765
Q ss_pred C
Q 046828 481 F 481 (627)
Q Consensus 481 ~ 481 (627)
.
T Consensus 239 ~ 239 (432)
T d1qksa2 239 G 239 (432)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2e-09 Score=106.15 Aligned_cols=81 Identities=9% Similarity=0.131 Sum_probs=55.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
.....++|++||+++..+......+.+|++.+.. +. ..+..... +...+.+|+|||||++|+
T Consensus 230 ~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------~~~~~~~~--~~~~p~~~a~spDGk~l~ 291 (333)
T d1ri6a_ 230 RWAADIHITPDGRHLYACDRTASLITVFSVSEDG-----SV-----------LSKEGFQP--TETQPRGFNVDHSGKYLI 291 (333)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----CC-----------EEEEEEEE--CSSSCCCEEECTTSSEEE
T ss_pred ccceeEEEecccCceeeecccCCeEEEEEEcCCC-----CE-----------EEEEEEeC--CCCCeeEEEEeCCCCEEE
Confidence 4567899999999887776655558999986321 10 12221111 123478899999999988
Q ss_pred EEe-CCCeEEEEEcCCCCCe
Q 046828 466 IVS-SRGTCHIFVLTPFGGE 484 (627)
Q Consensus 466 s~S-~dgTvhIw~i~~~gg~ 484 (627)
+++ .+++|.||+++...|.
T Consensus 292 va~~~~~~v~v~~id~~tG~ 311 (333)
T d1ri6a_ 292 AAGQKSHHISVYEIVGEQGL 311 (333)
T ss_dssp EECTTTCEEEEEEEETTTTE
T ss_pred EEECCCCeEEEEEEECCCCc
Confidence 775 4689999999875553
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.20 E-value=2.7e-11 Score=127.37 Aligned_cols=111 Identities=10% Similarity=0.110 Sum_probs=85.2
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
...+|.|+|||+.+++.+..|..|. .+..|+|||||++|++++.||+ |+|||+. ++.. ..+
T Consensus 38 ~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~-v~vwd~~-------t~~~----------~~~ 98 (426)
T d1hzua2 38 LRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDAR-IDMIDLW-------AKEP----------TKV 98 (426)
T ss_dssp ETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSE-EEEEETT-------SSSC----------EEE
T ss_pred EcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCC-EEEEEcc-------CCce----------eEE
Confidence 4679999999999999999999885 5899999999999999999997 8999996 2221 234
Q ss_pred EEEeecCCc-CcEEEEEEccCCCEEEEE-eCCCeEEEEEcCCCCCeeecccc
Q 046828 441 YKLHRGMTS-AVIQDICFSHYSQWIAIV-SSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 441 ~~l~rG~t~-a~I~sIaFSpDg~~Las~-S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
.+++.+... ..+.+++|||||++|+++ ..++++.+|+.........+..|
T Consensus 99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~ 150 (426)
T d1hzua2 99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150 (426)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeecc
Confidence 444433221 237788999999998655 48999999998876554444444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.14 E-value=3.1e-08 Score=104.65 Aligned_cols=191 Identities=15% Similarity=0.107 Sum_probs=120.3
Q ss_pred EEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccc
Q 046828 84 LLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLV 163 (627)
Q Consensus 84 l~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~ 163 (627)
+...-++.+.|||.++.. +...+..+.. +.-+.|.|. + .+|++..
T Consensus 36 v~~~d~g~v~v~D~~t~~-v~~~~~~g~~-~~~v~fSpD--------G-----~~l~~~s-------------------- 80 (432)
T d1qksa2 36 VTLRDAGQIALIDGSTYE-IKTVLDTGYA-VHISRLSAS--------G-----RYLFVIG-------------------- 80 (432)
T ss_dssp EEETTTTEEEEEETTTCC-EEEEEECSSC-EEEEEECTT--------S-----CEEEEEE--------------------
T ss_pred EEEcCCCEEEEEECCCCc-EEEEEeCCCC-eeEEEECCC--------C-----CEEEEEc--------------------
Confidence 445556679999999865 4444444443 555666553 2 5666432
Q ss_pred cCCCCCCCCCCCCcCCcEEEEEECCCCce--EEEEecCC----eEEEEEecC--cEE-EEE-eCCeEEEEeCCCCceeEE
Q 046828 164 RDGYDEPQPGNVAMSPTAVRFYSLRSHNY--VHVLRFRS----TVYMVRCSP--RIV-AVG-LAAQIYCFDALTLESKFS 233 (627)
Q Consensus 164 ~~g~~~~~~~~~~~~~~tV~lwdl~t~~~--V~tL~f~s----~V~sV~~s~--~~L-aV~-~~~~I~i~D~~t~e~~~t 233 (627)
.+++|++||+++++. +.+++-.. .+.++.|++ +.| |++ .++.|.|||+.+++.+.+
T Consensus 81 --------------~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~ 146 (432)
T d1qksa2 81 --------------RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 146 (432)
T ss_dssp --------------TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred --------------CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceee
Confidence 136799999998774 55555333 344445554 555 444 366899999999999988
Q ss_pred EEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 234 VLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 234 l~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+..+.... ....+...++.+|...+. .+..
T Consensus 147 ~~~~~~~~-----------~~~~~~~~~~~~~v~~s~-------------------------dg~~-------------- 176 (432)
T d1qksa2 147 QSTRGMTY-----------DEQEYHPEPRVAAILASH-------------------------YRPE-------------- 176 (432)
T ss_dssp EECCEECT-----------TTCCEESCCCEEEEEECS-------------------------SSSE--------------
T ss_pred eccCCccc-----------cceeccCCCceeEEEECC-------------------------CCCE--------------
Confidence 87653220 011233344444432110 0000
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR-AHTSPISALC 392 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~la 392 (627)
-.+ +...++.|.+||..+.+...... .+...+..++
T Consensus 177 -----------~~v--------------------------------s~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~ 213 (432)
T d1qksa2 177 -----------FIV--------------------------------NVKETGKILLVDYTDLNNLKTTEISAERFLHDGG 213 (432)
T ss_dssp -----------EEE--------------------------------EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred -----------EEE--------------------------------EEccCCeEEEEEccCCCcceEEEEcccCccccce
Confidence 000 12357899999998877554433 3456788999
Q ss_pred ECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 393 FDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 393 FspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
|+|||++|++++.++..+.+||..
T Consensus 214 ~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 214 LDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETT
T ss_pred ECCCCCEEEEeccccceEEEeecc
Confidence 999999999999998889999975
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.06 E-value=5.9e-09 Score=102.21 Aligned_cols=144 Identities=16% Similarity=0.073 Sum_probs=94.9
Q ss_pred CcEEEEEECCCCceEEEEecC---CeEEEEEecC--cEEEEE-e-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR---STVYMVRCSP--RIVAVG-L-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVN 251 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~---s~V~sV~~s~--~~LaV~-~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~ 251 (627)
+++|.+||+++++.++++..+ ..+.+|++++ ++|.|+ . +++|++||+.+++.+.++..+.... .+.
T Consensus 10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~------~~~- 82 (337)
T d1pbyb_ 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE------RVK- 82 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE------EEE-
T ss_pred CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc------ccc-
Confidence 478999999999999999854 3578999997 566444 3 5689999999999988876542110 000
Q ss_pred cccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEee
Q 046828 252 IGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSR 329 (627)
Q Consensus 252 ~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~ 329 (627)
....++++| ++|+.+..... ..
T Consensus 83 -~~~~v~~s~dg~~l~~~~~~~~-------------------------------------------------------~~ 106 (337)
T d1pbyb_ 83 -SLFGAALSPDGKTLAIYESPVR-------------------------------------------------------LE 106 (337)
T ss_dssp -CTTCEEECTTSSEEEEEEEEEE-------------------------------------------------------EC
T ss_pred -ceeeEEEcCCCcEEEEeecCCc-------------------------------------------------------ce
Confidence 011233332 23332221000 00
Q ss_pred eeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCE
Q 046828 330 YYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNN 409 (627)
Q Consensus 330 y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~ 409 (627)
.| .....++.+.+||..+++.+..+..+ ..+..++|+|||++|++++.+
T Consensus 107 ------------------~~---------~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--- 155 (337)
T d1pbyb_ 107 ------------------LT---------HFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--- 155 (337)
T ss_dssp ------------------SS---------CEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS---
T ss_pred ------------------ee---------eccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC---
Confidence 00 01235678999999999988888754 457889999999999998755
Q ss_pred EEEEeCC
Q 046828 410 INIFRIM 416 (627)
Q Consensus 410 I~Vwdi~ 416 (627)
+.+||..
T Consensus 156 ~~~~d~~ 162 (337)
T d1pbyb_ 156 LHVMDPE 162 (337)
T ss_dssp EEEEETT
T ss_pred cceeeee
Confidence 4677764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.95 E-value=4.2e-07 Score=91.20 Aligned_cols=54 Identities=9% Similarity=-0.066 Sum_probs=37.3
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.+.+|+..+.+.+..... +..+.+++ .++++. .++++.+||..+++.......
T Consensus 148 ~~~~~~~~~~~~~~~~~~~---~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 148 PAVGLVVQGGSSDDQLLSS---PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred CceEEeeccCCeEEEEecc---ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence 5688999988877665543 34556654 343443 567899999999887766654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.93 E-value=1.4e-07 Score=93.75 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=64.4
Q ss_pred CCCeEEEEECCCCeEEE--EeccC----------CCCeEEEEECCCCCEEEEEeCCC---------CEEEEEeCCCCCCC
Q 046828 363 IAGMVVVKDIVSRSVIS--QFRAH----------TSPISALCFDRSGTLLVTASIHG---------NNINIFRIMPSSSK 421 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~--~~~aH----------~~~Is~laFspdG~lLaTaS~dG---------t~I~Vwdi~p~~~~ 421 (627)
.+|.+.+||+..++... ....| ......++++|+|+.++.++.++ ..|.+||..
T Consensus 214 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~----- 288 (355)
T d2bbkh_ 214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK----- 288 (355)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-----
T ss_pred CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC-----
Confidence 45677777777654321 11112 12345689999999988876654 247899975
Q ss_pred CCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC--EEEEEeCCCeEEEEEcCCCCC
Q 046828 422 GRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ--WIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 422 ~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~--~Las~S~dgTvhIw~i~~~gg 483 (627)
++. .+.++.-+ ..+.+++|||||+ ++++++.+++|+|||+.....
T Consensus 289 --t~~------------~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 289 --TGE------------RLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335 (355)
T ss_dssp --TCC------------EEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred --CCc------------EEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence 232 34444322 2488999999998 345667799999999986443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=4e-07 Score=89.12 Aligned_cols=187 Identities=11% Similarity=0.129 Sum_probs=117.9
Q ss_pred cEEEEEECCCC---ceEEEEecCCeEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 180 TAVRFYSLRSH---NYVHVLRFRSTVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 180 ~tV~lwdl~t~---~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
++|++||+.+. +.+.++++...|..|+|+| +.|.++. ++.|++|++.+.+...++..+...
T Consensus 14 ~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~------------ 81 (333)
T d1ri6a_ 14 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL------------ 81 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC------------
T ss_pred CcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc------------
Confidence 67999998765 3456667888999999998 6776654 568999998876554444332110
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
...|..||+.++...+ + +
T Consensus 82 -----~~~p~~l~~spDg~~l-------------------------------------------~---------v----- 99 (333)
T d1ri6a_ 82 -----PGSLTHISTDHQGQFV-------------------------------------------F---------V----- 99 (333)
T ss_dssp -----SSCCSEEEECTTSSEE-------------------------------------------E---------E-----
T ss_pred -----CCCceEEEEcCCCCEE-------------------------------------------e---------e-----
Confidence 0112344444432100 0 0
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEE--EEeccCCCCeEEEEECCCCCEEEEEeCCCCEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVI--SQFRAHTSPISALCFDRSGTLLVTASIHGNNI 410 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l--~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I 410 (627)
....++.|.+|+....... .....|...+.++.|+|||++++.++..+..|
T Consensus 100 ---------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i 152 (333)
T d1ri6a_ 100 ---------------------------GSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRI 152 (333)
T ss_dssp ---------------------------EETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred ---------------------------cccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccccccee
Confidence 0123567777777665443 33445677788999999999999999888889
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCC
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFG 482 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~g 482 (627)
.+|+....... ..................++|+++++++.... ..++..+|++....
T Consensus 153 ~~~~~~~~~~~---------------~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 210 (333)
T d1ri6a_ 153 CLFTVSDDGHL---------------VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 210 (333)
T ss_dssp EEEEECTTSCE---------------EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred eEEEeccCCcc---------------eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccc
Confidence 99997522100 00111111111223478999999999987765 55678888876543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.66 E-value=4.8e-07 Score=89.76 Aligned_cols=180 Identities=13% Similarity=0.042 Sum_probs=116.3
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEcCCCCCCCCC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLTYPVPHFGGQ 245 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~~p~~~~~~~ 245 (627)
..+|.+||..+++.+.++.... +..+++++ +.|+++. ++.|++||+.+++.+.++..+..+.
T Consensus 27 ~~~v~v~D~~tg~~~~~~~~g~-~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~---- 101 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMIDGGF-LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR---- 101 (355)
T ss_dssp SEEEEEEETTTTEEEEEEEECS-SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC----
T ss_pred cCeEEEEECCCCcEEEEEECCC-CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce----
Confidence 4789999999999999987543 23689997 5665542 4579999999999888876643321
Q ss_pred CCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCccee
Q 046828 246 GTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYK 325 (627)
Q Consensus 246 g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~ 325 (627)
..+...++.+++.++...+
T Consensus 102 ---------~~~~~~~~~~~~s~dg~~~---------------------------------------------------- 120 (355)
T d2bbkh_ 102 ---------FLVGTYPWMTSLTPDGKTL---------------------------------------------------- 120 (355)
T ss_dssp ---------CCBSCCGGGEEECTTSSEE----------------------------------------------------
T ss_pred ---------eecCCCCceEEEecCCCee----------------------------------------------------
Confidence 0111223455555432100
Q ss_pred EEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCC-------CeEEEEECCCCC
Q 046828 326 TLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTS-------PISALCFDRSGT 398 (627)
Q Consensus 326 ~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~-------~Is~laFspdG~ 398 (627)
.+. ....+..+.+||..+++.+..+..+.. +...++|++||+
T Consensus 121 ~v~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 169 (355)
T d2bbkh_ 121 LFY-------------------------------QFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS 169 (355)
T ss_dssp EEE-------------------------------ECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSC
T ss_pred EEe-------------------------------cCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCC
Confidence 000 112456789999999988888775532 234567777777
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 399 lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
.+.....+...+.+++..... .+. ...+...+|++++..++.++.++++++|++
T Consensus 170 ~~~v~~~~~~~~~~~~~~~~~-------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 223 (355)
T d2bbkh_ 170 LAKVAFGTEGTPEITHTEVFH-------------------------PED-EFLINHPAYSQKAGRLVWPTYTGKIHQIDL 223 (355)
T ss_dssp EEEEECCSSSCCEEEECCCCS-------------------------CTT-SCBCSCCEEETTTTEEEEEBTTSEEEEEEC
T ss_pred EEEEEecCCCeEEEEeccccc-------------------------cee-cceeeeccccCCCCeEEEecCCCeEEEEec
Confidence 776655544435555543110 011 112556788999999999999999999998
Q ss_pred CCC
Q 046828 479 TPF 481 (627)
Q Consensus 479 ~~~ 481 (627)
...
T Consensus 224 ~~~ 226 (355)
T d2bbkh_ 224 SSG 226 (355)
T ss_dssp TTS
T ss_pred CCC
Confidence 754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.62 E-value=1.4e-06 Score=88.37 Aligned_cols=59 Identities=5% Similarity=-0.035 Sum_probs=46.2
Q ss_pred CcEEEEEECCCCceEEEEecCC--------eEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEEcC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS--------TVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s--------~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~~~ 237 (627)
+.+|++||..+++.+.++..+. ....++|++ +.|+++. .+.|.+||+.+++....+..+
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~ 165 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA 165 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS
T ss_pred CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc
Confidence 4789999999999999987432 224688987 6777764 458999999999988887654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.58 E-value=1.5e-07 Score=92.18 Aligned_cols=101 Identities=9% Similarity=0.026 Sum_probs=75.3
Q ss_pred CCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEE-EeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 361 TDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVT-ASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaT-aS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..++.|.|||+.+++.+..++ .|...+..|+|+|||++|+. ++.+++ |++||+. ++ .
T Consensus 14 ~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~-v~~~d~~-------t~------------~ 73 (346)
T d1jmxb_ 14 TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD-IYGIDLD-------TC------------K 73 (346)
T ss_dssp EETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE-EEEEETT-------TT------------E
T ss_pred EcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCc-EEEEeCc-------cC------------e
Confidence 4678999999999999999987 56667889999999998754 456665 8999986 33 1
Q ss_pred EEEEEeecCCcC----cEEEEEEccCCCEEEEEe------------CCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSA----VIQDICFSHYSQWIAIVS------------SRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a----~I~sIaFSpDg~~Las~S------------~dgTvhIw~i~~~ 481 (627)
.+.++..+.... .+..++|||||++|++++ .++.+.+|+....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~ 132 (346)
T d1jmxb_ 74 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 132 (346)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence 333443322211 256899999999998876 4777888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.54 E-value=4e-06 Score=83.78 Aligned_cols=181 Identities=10% Similarity=-0.064 Sum_probs=114.9
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEcCCCCCCCCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLTYPVPHFGGQG 246 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g 246 (627)
..|.+||..+++.+.++.-... ..+.|++ +.|+++. ++.|.+||+.+++.+..+..+..+
T Consensus 47 ~~v~v~D~~tg~~~~~~~~~~~-~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~------ 119 (373)
T d2madh_ 47 IQQWVLDAGSGSILGHVNGGFL-PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------ 119 (373)
T ss_pred ceEEEEECCCCCEEEEEeCCCC-ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcc------
Confidence 5799999999999999875442 3788997 6777764 356999999999988887654332
Q ss_pred CcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 247 TSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 247 ~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
...+...++.+++.++...+ .
T Consensus 120 -------~~~~~~~~~~~~~s~dg~~~----------------------------------------------------~ 140 (373)
T d2madh_ 120 -------RFDVGPYSWMNANTPNNADL----------------------------------------------------L 140 (373)
T ss_pred -------eeEeccCCCcEEEEeCCCcE----------------------------------------------------E
Confidence 11122233445554432110 0
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLL-VTASI 405 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lL-aTaS~ 405 (627)
+. ....++.+.+||....+.+.... ...++.|+|+|+.+ ++.+.
T Consensus 141 v~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~ 185 (373)
T d2madh_ 141 FF-------------------------------QFAAGPAVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCA 185 (373)
T ss_pred EE-------------------------------EEcCCCceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcC
Confidence 00 01235678899988877655444 45678999999865 67888
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC----CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 406 HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM----TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 406 dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~----t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+|+ +.+|+... +. ......... .......+.+++++.++ ..+.++++++|+....
T Consensus 186 dg~-~~~~~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 244 (373)
T d2madh_ 186 QGG-LAKTDHAG-------GA------------AGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAA 244 (373)
T ss_pred CCe-EEEEEcCC-------ce------------eeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCC
Confidence 998 78999751 21 111111111 11124566777777555 5668999999998764
Q ss_pred C
Q 046828 482 G 482 (627)
Q Consensus 482 g 482 (627)
.
T Consensus 245 ~ 245 (373)
T d2madh_ 245 G 245 (373)
T ss_pred e
Confidence 3
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.38 E-value=1.6e-06 Score=90.89 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=67.1
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc-cCCCCceeEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT-YDWTSSHVHLY 441 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~-~~~~~~~~~l~ 441 (627)
..|.+.|||+.+++ +..+..|...+..+.|||||+.||..+.. .+.+|+.. .|...+- ...... ..+
T Consensus 90 ~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~~--~l~~~~~~-------~g~~~~~t~~~~~~--~~~ 157 (470)
T d2bgra1 90 YTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVWNN--DIYVKIEP-------NLPSYRITWTGKED--IIY 157 (470)
T ss_dssp EEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEETT--EEEEESST-------TSCCEECCSCCBTT--TEE
T ss_pred cCceEEEEECCCCc-ccccccCCccccccccccCcceeeEeecc--cceEEECC-------CCceeeeeeccCCC--ccc
Confidence 46789999999986 56688899999999999999999997654 47899874 2210000 000000 000
Q ss_pred EEeecCC--------cCcEEEEEEccCCCEEEEEeCCCe-EEEEEcCC
Q 046828 442 KLHRGMT--------SAVIQDICFSHYSQWIAIVSSRGT-CHIFVLTP 480 (627)
Q Consensus 442 ~l~rG~t--------~a~I~sIaFSpDg~~Las~S~dgT-vhIw~i~~ 480 (627)
.|.. ......+.|||||++||....|.+ +..|.+..
T Consensus 158 ---~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~ 202 (470)
T d2bgra1 158 ---NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF 202 (470)
T ss_dssp ---ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred ---ccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEe
Confidence 0100 011345789999999999887665 66665543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.13 E-value=3.7e-05 Score=81.24 Aligned_cols=220 Identities=10% Similarity=0.046 Sum_probs=126.0
Q ss_pred CcEEEEEECCCCceEEEEecC--CeEEEEEecC--c--EEEEEeCCeE------------------EEEeCCCCceeEEE
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR--STVYMVRCSP--R--IVAVGLAAQI------------------YCFDALTLESKFSV 234 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~--s~V~sV~~s~--~--~LaV~~~~~I------------------~i~D~~t~e~~~tl 234 (627)
.++|.++|+++.+....++.+ ..+..++|++ + +++...+..+ ..+|..+++..+++
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 478999999999999888754 4789999986 4 3443344333 56899999988888
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhh
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQL 312 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l 312 (627)
.....| .-++++| +|+..+..... .+..++... +..
T Consensus 173 ~v~~~p--------------~~v~~spdGk~a~vt~~nse---------------------------~~~~id~~t-~~~ 210 (441)
T d1qnia2 173 IVDGNL--------------DNTDADYTGKYATSTCYNSE---------------------------RAVDLAGTM-RND 210 (441)
T ss_dssp EESSCC--------------CCEEECSSSSEEEEEESCTT---------------------------CCSSHHHHT-CSS
T ss_pred ecCCCc--------------cceEECCCCCEEEEEecCCC---------------------------ceEEEeccC-cce
Confidence 654443 1244444 67665543210 000011111 111
Q ss_pred hcceeecCCcceeEEee--eeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEE
Q 046828 313 AAGLINLGDMGYKTLSR--YYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISA 390 (627)
Q Consensus 313 ~~gl~~lg~~g~~~~s~--y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~ 390 (627)
.. +..+.. +.....|+ |++. ....++.+.|++....+.+..++.+.+| ..
T Consensus 211 ~d---------~i~v~n~p~~~~~~~d--------------Gk~~----~v~~~~v~vvd~~~~~~v~~~IPvgksP-hG 262 (441)
T d1qnia2 211 RD---------WVVVFNVERIAAAVKA--------------GNFK----TIGDSKVPVVDGRGESEFTRYIPVPKNP-HG 262 (441)
T ss_dssp BC---------EEEEEEHHHHHHHHHT--------------TCCB----CCTTCCCCEEECSSSCSSEEEECCBSSC-CC
T ss_pred EE---------EEEeCCccceEEEecC--------------CCEE----EeCCCCcEEEEcccCCceEEEEeCCCCc-cC
Confidence 00 000000 00000112 2111 1234678888888888888899887776 56
Q ss_pred EEECCCCCEEEEE-eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 391 LCFDRSGTLLVTA-SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 391 laFspdG~lLaTa-S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
++++|||++++.+ ..+++ |.|||+..-... -.+. .++... ...+..-|. -....+|.++|..+.+...
T Consensus 263 v~vSPDGkyl~~~~~~~~t-vsv~d~~k~~~~-~~~~----~~~~~~--~~~~~~~gl---gplh~~fd~~g~~yts~~~ 331 (441)
T d1qnia2 263 LNTSPDGKYFIANGKLSPT-VSVIAIDKLDDL-FEDK----IELRDT--IVAEPELGL---GPLHTTFDGRGNAYTTLFI 331 (441)
T ss_dssp EEECTTSCEEEEECTTSSB-EEEEEGGGHHHH-TTTS----SCGGGG--EEECCBCCS---CEEEEEECSSSEEEEEETT
T ss_pred ceECCCCCEEEEeCCcCCc-EEEEEeehhhhH-hhcc----CCcceE--EEeeccccc---CcccceecCCceEEEcccc
Confidence 8999999987655 55666 899998521000 0000 000000 111111111 1344689999999999999
Q ss_pred CCeEEEEEcC
Q 046828 470 RGTCHIFVLT 479 (627)
Q Consensus 470 dgTvhIw~i~ 479 (627)
|.+|..|++.
T Consensus 332 ds~v~kw~~~ 341 (441)
T d1qnia2 332 DSQVCKWNIA 341 (441)
T ss_dssp TTEEEEEEHH
T ss_pred cceEEEeccc
Confidence 9999999985
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.05 E-value=7.7e-06 Score=85.51 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=71.2
Q ss_pred CCCeEEEEECCCCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCCCCc
Q 046828 363 IAGMVVVKDIVSRSVISQFRA-----HTSPISALCFDRSGTLLVTASI---------HGNNINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~a-----H~~~Is~laFspdG~lLaTaS~---------dGt~I~Vwdi~p~~~~~~~g~~~ 428 (627)
.+|.|.+||+.+++....+.. |...|.+++|||||++||.++. +|. +.|||+. ++
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~-~~l~d~~-------~~--- 102 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS-YDIYDLN-------KR--- 102 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE-EEEEETT-------TT---
T ss_pred cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce-EEEEECC-------CC---
Confidence 467899999999987665544 4578999999999999999864 344 6789986 23
Q ss_pred cccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 429 QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 429 ~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+..+ .++ ...+..+.|||||++||... ++.+++|++...
T Consensus 103 ----------~~~~l-~~~-~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g 142 (470)
T d2bgra1 103 ----------QLITE-ERI-PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (470)
T ss_dssp ----------EECCS-SCC-CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred ----------ccccc-ccC-CccccccccccCcceeeEee-cccceEEECCCC
Confidence 23333 233 33589999999999999964 668888887643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.05 E-value=6.2e-06 Score=83.32 Aligned_cols=99 Identities=8% Similarity=-0.050 Sum_probs=72.2
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI----------HGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~----------dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
.+..|.+||..+++.+.++..|..+ .++|+|||+.|+.++. +++ |++||.. ++.
T Consensus 44 g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~-v~v~D~~-------t~~------ 107 (368)
T d1mdah_ 44 GTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY-VEVFDPV-------TFL------ 107 (368)
T ss_dssp SSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE-EEEECTT-------TCC------
T ss_pred CcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCe-EEEEECC-------CCc------
Confidence 4566888899999999999887765 5899999999998864 444 8999985 232
Q ss_pred CCCceeEEEEEe--ecC---CcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCC
Q 046828 433 WTSSHVHLYKLH--RGM---TSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGG 483 (627)
Q Consensus 433 ~~~~~~~l~~l~--rG~---t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg 483 (627)
.+.++. ++. .......++|||||++|++++ .++++.+|++.....
T Consensus 108 ------~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~ 158 (368)
T d1mdah_ 108 ------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp ------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred ------EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 333331 111 111234689999999999887 579999999876543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.03 E-value=0.00016 Score=73.75 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=48.9
Q ss_pred eEEEEECCCCCEEEEEeCC-----CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC-cCcEEEEEEcc-C
Q 046828 388 ISALCFDRSGTLLVTASIH-----GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT-SAVIQDICFSH-Y 460 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~d-----Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t-~a~I~sIaFSp-D 460 (627)
...|.|+|||++|+++... .-.|-+|++... |. ...+..+.+-.+ ...-..|+|+| |
T Consensus 257 ~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~------g~----------~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS----------IEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC----------EEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred ccceEECCCCCEEEEEcccCCCccceEEEEEEecCC------Cc----------eeeEeEeeEEEcCCCCccEEEecCCC
Confidence 5679999999999887431 112566776421 21 011222211111 12257799998 8
Q ss_pred CCEEEEEe-CCCeEEEEEcCCCC
Q 046828 461 SQWIAIVS-SRGTCHIFVLTPFG 482 (627)
Q Consensus 461 g~~Las~S-~dgTvhIw~i~~~g 482 (627)
|+||+++. .+++|.||+++..+
T Consensus 321 G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 321 DEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTE
T ss_pred CCEEEEEeCCCCeEEEEEEeCCc
Confidence 99998875 67899999987643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.027 Score=52.41 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=56.9
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
.|.+.++..+.. ..+..+........|+|+|+.++..+.++....+|...... + .. ++..
T Consensus 152 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~-----~-------------~~-~~~~ 211 (269)
T d2hqsa1 152 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-----G-------------GV-QVLS 211 (269)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-----C-------------CE-EECC
T ss_pred eEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeeccc-----c-------------cc-eEee
Confidence 355566655432 33444556677789999999999988877556666554221 1 11 1212
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcC
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLT 479 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~ 479 (627)
. ........|||||++||-.+.++ .+++++++
T Consensus 212 ~--~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 212 S--TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp C--SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred c--CccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 1 22367889999999998766543 44555554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.42 E-value=0.0019 Score=67.72 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=65.3
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCE--------------EEEEeCCCCCCC-CCCCCC--
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNN--------------INIFRIMPSSSK-GRSGSA-- 427 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~--------------I~Vwdi~p~~~~-~~~g~~-- 427 (627)
..+..+|..+.+...++.... ....++|+|||++++.++.+... |.+++.. .... -+.|..
T Consensus 156 ~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p-~~~~~~~dGk~~~ 233 (441)
T d1qnia2 156 TMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE-RIAAAVKAGNFKT 233 (441)
T ss_dssp EEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH-HHHHHHHTTCCBC
T ss_pred ceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc-ceEEEecCCCEEE
Confidence 467789999999888887654 46789999999999988865432 2232210 0000 000000
Q ss_pred -----ccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE-EeCCCeEEEEEcCC
Q 046828 428 -----SQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI-VSSRGTCHIFVLTP 480 (627)
Q Consensus 428 -----~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las-~S~dgTvhIw~i~~ 480 (627)
....+.......+..+.-|.. ...+++||||+++++ +..++||.||++..
T Consensus 234 v~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 234 IGDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp CTTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred eCCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 000000000012223322322 467899999998755 67799999999875
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.14 E-value=0.086 Score=50.24 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=65.3
Q ss_pred CCeEEEEECCCCeEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSVISQFR--AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+.|.+||.. ++.+..|. ++......|+++++|.++++-..++..|.+|+. +|. .+.
T Consensus 177 ~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~--------~G~------------~~~ 235 (279)
T d1q7fa_ 177 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ--------DGQ------------LIS 235 (279)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT--------TSC------------EEE
T ss_pred ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC--------CCC------------EEE
Confidence 4567788764 45566663 344557889999999988775544445889974 242 344
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+..+........|++.+||+. .+++.+.+|++|+....
T Consensus 236 ~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 236 ALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCC
T ss_pred EEeCCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeeee
Confidence 4433333345789999999974 55678899999997653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.04 E-value=0.035 Score=55.57 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=56.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
-+..++|+|||++|+.++.....|.+|++... |. ..................++|+||++++.+
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~------g~----------~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv 209 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLAS------GE----------VELVGSVDAPDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SC----------EEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCC------Cc----------eeeccceeecCCCCceEEEEECCCCceEEE
Confidence 36789999999999998876556888886421 21 011222222112234799999999998866
Q ss_pred Ee-CCCeEEEEEcCCCCCe
Q 046828 467 VS-SRGTCHIFVLTPFGGE 484 (627)
Q Consensus 467 ~S-~dgTvhIw~i~~~gg~ 484 (627)
.. .+++|.+|+++.....
T Consensus 210 ~~e~~~~V~v~~~~~~~~~ 228 (365)
T d1jofa_ 210 LMEAGNRICEYVIDPATHM 228 (365)
T ss_dssp EETTTTEEEEEEECTTTCC
T ss_pred eccCCCEEEEEEecCCCce
Confidence 65 5789999999865443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.44 E-value=0.48 Score=46.39 Aligned_cols=47 Identities=11% Similarity=0.204 Sum_probs=40.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEe-cCcEEEEEeCCeEEEEeCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRC-SPRIVAVGLAAQIYCFDAL 226 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~-s~~~LaV~~~~~I~i~D~~ 226 (627)
++++++|+++.+.++...++.+|.==++ +.+.|+...+..||=|++.
T Consensus 83 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~ 130 (327)
T d1utca2 83 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSME 130 (327)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESS
T ss_pred CeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCCceEEEccc
Confidence 6799999999999999999987644444 6799999999999999984
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.14 E-value=0.017 Score=56.14 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=59.5
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEE
Q 046828 374 SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453 (627)
Q Consensus 374 s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~ 453 (627)
..+.+..|...+ .+..++++|||+++++...+++ |..|+ |. |. ...+..+ ...+.
T Consensus 17 ~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~-I~~i~--p~------g~----------~~~~~~~-----~~~~~ 71 (302)
T d2p4oa1 17 PAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGE-IVSIT--PD------GN----------QQIHATV-----EGKVS 71 (302)
T ss_dssp CEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTE-EEEEC--TT------CC----------EEEEEEC-----SSEEE
T ss_pred cccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCE-EEEEe--CC------CC----------EEEEEcC-----CCCcc
Confidence 345667776433 5889999999999999888875 44444 43 21 0122221 23589
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.|+|++||+.+++...++.+.+|+.....+
T Consensus 72 gla~~~dG~l~v~~~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 72 GLAFTSNGDLVATGWNADSIPVVSLVKSDG 101 (302)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred eEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence 999999999999999999998888765444
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.71 E-value=0.94 Score=43.27 Aligned_cols=51 Identities=10% Similarity=-0.087 Sum_probs=40.5
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC-cEEEEEeCCeEEEEeCCCCcee
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-RIVAVGLAAQIYCFDALTLESK 231 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-~~LaV~~~~~I~i~D~~t~e~~ 231 (627)
++|.-||+++++. ..+.++..+.++.+.. ..|.++....|+.||..+++..
T Consensus 40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~ 91 (295)
T d2ghsa1 40 RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLT 91 (295)
T ss_dssp TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEE
T ss_pred CEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceee
Confidence 6788899998864 5677888888888754 5666677889999999998753
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.46 E-value=0.28 Score=48.19 Aligned_cols=194 Identities=13% Similarity=0.209 Sum_probs=111.6
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.+++|+|+++++.++.+.-. .+|..-.|-.+-+ |+-... +.|.-|+++ |. +.+.+++++.
T Consensus 83 ~~LQiFnletK~klks~~~~-e~VvfWkWis~~~-L~lVT~--taVYHW~~~--------g~--------s~P~k~fdR~ 142 (327)
T d1utca2 83 KTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVTD--NAVYHWSME--------GE--------SQPVKMFDRH 142 (327)
T ss_dssp TEEEEEETTTTEEEEEEECS-SCCCEEEESSSSE-EEEECS--SEEEEEESS--------SS--------CCCEEEEECC
T ss_pred CeEEEEehhHhhhhceEEcC-CCcEEEEecCCCE-EEEEcC--CceEEEccc--------CC--------CCchhhhhhc
Confidence 46999999999988877754 4777778876554 444443 357889984 10 1124666655
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCcccccc
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSS-------RGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQ 517 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~-------dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q 517 (627)
.-..+..|-.-.-++|.+|++..+- .|.+.||.++..- ...+++|.. .|++
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa---------------------~F~~ 200 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA---------------------SFAQ 200 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEE---------------------EEEE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccceee---------------------eeEE
Confidence 4444556888899999999997543 4678899987543 334667643 1334
Q ss_pred CCCCCCCCCCeeeeeeeeeecCCCCccccccccc--cccCCccCCCccceeeecccccccCCCcccccc-cCcceEEEEc
Q 046828 518 PSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTA--SSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKV-NDLEHVLVYT 594 (627)
Q Consensus 518 ~~~~~~~p~~~~l~~~~~i~~~~~~w~~~~~~~~--~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~-~~~~~l~v~~ 594 (627)
++++. .+.|.+|=.++. |.. .+ +.++=.. ...+|....+ -...++|-..-+.+.=++...+ ++-.-+||++
T Consensus 201 ~~~~g-~~~~~~lf~fa~-r~~-~~--~kLhIiEig~~~~g~~~f~-kk~vdi~fppea~~DFPvamqvs~kygiiyviT 274 (327)
T d1utca2 201 FKMEG-NAEESTLFCFAV-RGQ-AG--GKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 274 (327)
T ss_dssp ECCTT-CSSCEEEEEEEE-EET-TE--EEEEEEECSCCCTTCCCCC-CEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred EEcCC-CCCCceEEEEEE-CCC-CC--cEEEEEEcCCCccCCCCCc-ceeEEEECCccccCCcEEEEEeeccCCEEEEEe
Confidence 44432 223444444432 211 11 1111110 1111112222 2455666544333222222223 6666799999
Q ss_pred CCCcEEEEEeec
Q 046828 595 PSGHVVQYKLLS 606 (627)
Q Consensus 595 ~~G~l~~y~l~p 606 (627)
-.|+++.|+|+.
T Consensus 275 K~G~i~lyDleT 286 (327)
T d1utca2 275 KYGYIHLYDLET 286 (327)
T ss_dssp TTSEEEEEETTT
T ss_pred cCcEEEEEEccc
Confidence 999999999864
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.12 E-value=0.069 Score=49.41 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=54.9
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCC----EEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI-HGN----NINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-dGt----~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+|.|.+.|+.+++. ..|..+...+...+|||||+.||-... ++. .|.+++.. .|
T Consensus 20 ~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~-------~g------------- 78 (281)
T d1k32a2 20 CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-------NG------------- 78 (281)
T ss_dssp TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-------TT-------------
T ss_pred CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec-------CC-------------
Confidence 46788889998875 456667778899999999999997643 222 13444442 22
Q ss_pred EEEEEeec-----CCcCcEEEEEEccCCCEEEEEeCC
Q 046828 439 HLYKLHRG-----MTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 439 ~l~~l~rG-----~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
...++-.. .........+|+|||+.|+.....
T Consensus 79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 115 (281)
T d1k32a2 79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM 115 (281)
T ss_dssp EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred ceEEeeecCCCccCccccccccccCCCCCEEEEEEcc
Confidence 22222110 001125778999999999987553
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.94 E-value=0.36 Score=45.06 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=55.1
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
+.|..+|...................|+|+++|.++++-...+. |..|+.. .. . ..+.. .
T Consensus 161 ~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~--~~----~------------~~~~~-~ 220 (260)
T d1rwia_ 161 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAG--ST----T------------STVLP-F 220 (260)
T ss_dssp TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTT--CS----C------------CEECC-C
T ss_pred ccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCC--CC----e------------EEEEc-c
Confidence 45666665544333222244455688999999998888777765 4445532 10 0 11211 1
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.+. ....+|+|++||..+++-..++ +|+.+++.+.
T Consensus 221 ~~~--~~P~~i~~d~~g~l~vad~~~~--rI~~i~~~~~ 255 (260)
T d1rwia_ 221 TGL--NTPLAVAVDSDRTVYVADRGND--RVVKLTSLEH 255 (260)
T ss_dssp CSC--CCEEEEEECTTCCEEEEEGGGT--EEEEECCCGG
T ss_pred CCC--CCeEEEEEeCCCCEEEEECCCC--EEEEEeCCCC
Confidence 222 2368999999998776655555 4556655543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=94.73 E-value=0.096 Score=50.43 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.++.|..||.... ...+..+...+..|+|+|||+++++....+. +.+|+..+. .+. ...+..
T Consensus 47 ~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~-~~~~~~~~~-----~~~----------~~~~~~ 108 (302)
T d2p4oa1 47 EVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADS-IPVVSLVKS-----DGT----------VETLLT 108 (302)
T ss_dssp TTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTS-CEEEEEECT-----TSC----------EEEEEE
T ss_pred CCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCce-EEEEEeccc-----ccc----------eeeccc
Confidence 4677777776543 3345556677999999999999999888777 566665422 121 112222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.. ......++++.+|++++++-+.++.+..++..
T Consensus 109 ~~---~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~ 142 (302)
T d2p4oa1 109 LP---DAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 142 (302)
T ss_dssp CT---TCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred cC---CccccceeEEccCCCEEeeccccccceeeecc
Confidence 21 22248999999999999888878876655544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.62 E-value=1.7 Score=40.58 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=62.3
Q ss_pred CeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
+.|.++|.. ++.+..+. .+......++++++|.++++....+. +.+|+.. |. .+.++
T Consensus 93 ~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~-~~~~~~~--------g~------------~~~~~ 150 (279)
T d1q7fa_ 93 HQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMR-VIIFDQN--------GN------------VLHKF 150 (279)
T ss_dssp CEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTE-EEEECTT--------SC------------EEEEE
T ss_pred ccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccce-eeEeccC--------Cc------------eeecc
Confidence 455555543 34444443 34556789999999998887766554 6677632 32 34444
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
...........|++.++++.+++....++|++|+.+
T Consensus 151 g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~ 186 (279)
T d1q7fa_ 151 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 186 (279)
T ss_dssp ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred cccccccccceeeeccceeEEeeeccccceeeeecC
Confidence 222223348999999999999998889999999853
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.037 Score=57.68 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=63.0
Q ss_pred CCCCeEEEEECCCCeEEEEeccCC---CCeEEEEECCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCCCCcc
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHT---SPISALCFDRSGTLLVTASI---------HGNNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~---~~Is~laFspdG~lLaTaS~---------dGt~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
..+|.|.+||+.+++....+..++ -.+....|||||+.|+.+.. .|. +.|+|+. ++.
T Consensus 34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~-~~i~d~~-------~~~--- 102 (465)
T d1xfda1 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY-YVLSKIP-------HGD--- 102 (465)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE-EEEEESS-------SCC---
T ss_pred eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeecccc-EEEEEcc-------CCc---
Confidence 467889999999887644444432 36778899999999888754 343 6778875 221
Q ss_pred ccCCCCceeEEEEEeecC-CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 430 TYDWTSSHVHLYKLHRGM-TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~-t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
...+.... ....++...|||||++||-... +-+++.+..
T Consensus 103 ----------~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~~~ 142 (465)
T d1xfda1 103 ----------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV 142 (465)
T ss_dssp ----------CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS
T ss_pred ----------eeeccCccCCccccceeeeccCCceEEEEec-ceEEEEecC
Confidence 12221111 1223677899999999998864 456665554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=2.3 Score=38.40 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=38.0
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC----eEEEEeCCCCcee
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA----QIYCFDALTLESK 231 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~----~I~i~D~~t~e~~ 231 (627)
..|.|.|.........++....+.+-++|| +.||..... .+++++..+++..
T Consensus 19 ~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~ 76 (269)
T d2hqsa1 19 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR 76 (269)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred EEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee
Confidence 358888877666666667888899999998 788765432 4888888877643
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.091 Score=54.54 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=61.3
Q ss_pred CCCeEEEEECCCCeEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIVSRSVISQFR--AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
..|.+.|+|+.+++...... .....+....|||||+.||-.... .|.+.+.. . +. ..
T Consensus 89 ~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~--nl~~~~~~-~------~~------------~~ 147 (465)
T d1xfda1 89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN--NIYYCAHV-G------KQ------------AI 147 (465)
T ss_dssp CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT--EEEEESSS-S------SC------------CE
T ss_pred ccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecc--eEEEEecC-C------Cc------------eE
Confidence 46789999999886533222 234456778999999999998754 35666553 1 11 11
Q ss_pred EEEeecCCcCc----------------EEEEEEccCCCEEEEEeC-CCeEEEEEcCCCC
Q 046828 441 YKLHRGMTSAV----------------IQDICFSHYSQWIAIVSS-RGTCHIFVLTPFG 482 (627)
Q Consensus 441 ~~l~rG~t~a~----------------I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~g 482 (627)
.....|..... -..+-|||||++||.... +..|..|.+..++
T Consensus 148 ~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~ 206 (465)
T d1xfda1 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT 206 (465)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred EEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccc
Confidence 11112221110 135779999999998764 4447777765544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=92.99 E-value=4 Score=38.86 Aligned_cols=77 Identities=8% Similarity=0.122 Sum_probs=47.6
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~ 467 (627)
-+.|+|+|||+.|..+......|..|++...... .. ...........+. ..-..|++..||+..++.
T Consensus 179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~---~~--------~~~~~~~~~~~~~--~~PdGl~vD~~G~l~Va~ 245 (319)
T d2dg1a1 179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVT---IQ--------PFGATIPYYFTGH--EGPDSCCIDSDDNLYVAM 245 (319)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS---EE--------EEEEEEEEECCSS--SEEEEEEEBTTCCEEEEE
T ss_pred eeeeeeccccceEEEecccCCceEEEEEcCCCce---ec--------cccceeeeccCCc--cceeeeeEcCCCCEEEEE
Confidence 4679999999877666554445888988532110 00 0000111111111 225789999999988888
Q ss_pred eCCCeEEEEE
Q 046828 468 SSRGTCHIFV 477 (627)
Q Consensus 468 S~dgTvhIw~ 477 (627)
...+.|.+|+
T Consensus 246 ~~~g~V~~~~ 255 (319)
T d2dg1a1 246 YGQGRVLVFN 255 (319)
T ss_dssp ETTTEEEEEC
T ss_pred cCCCEEEEEC
Confidence 8899998887
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.92 E-value=0.28 Score=45.02 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=45.6
Q ss_pred EECCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 392 CFDRS--GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 392 aFspd--G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
..+|| |+.+|-.+.+ . |.+.|+. .| ...+|-.+ ...+...+|||||++||....
T Consensus 5 ~~sPdi~G~~v~f~~~~-d-l~~~d~~-------~g-------------~~~~Lt~~--~~~~~~p~~SPDG~~iaf~~~ 60 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCD-D-LWEHDLK-------SG-------------STRKIVSN--LGVINNARFFPDGRKIAIRVM 60 (281)
T ss_dssp CEEEEEETTEEEEEETT-E-EEEEETT-------TC-------------CEEEEECS--SSEEEEEEECTTSSEEEEEEE
T ss_pred ccCCCCCCCEEEEEeCC-c-EEEEECC-------CC-------------CEEEEecC--CCcccCEEECCCCCEEEEEEe
Confidence 46799 9999987654 3 5666774 22 23344333 245789999999999997653
Q ss_pred C----CeEEEEEcCCCCCee
Q 046828 470 R----GTCHIFVLTPFGGET 485 (627)
Q Consensus 470 d----gTvhIw~i~~~gg~~ 485 (627)
+ ....||.+...++..
T Consensus 61 ~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 61 RGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp ESTTCCEEEEEEEETTTTEE
T ss_pred eCCCCCceEEEEEEecCCce
Confidence 2 234566666666554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=88.74 E-value=1.8 Score=41.57 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=60.2
Q ss_pred CCCeEEEEECCCCeE------EEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 363 IAGMVVVKDIVSRSV------ISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~------l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
..+.|..||+..... ...+... ......|+++.+|.+.++....|. |.+||-. .+.
T Consensus 196 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~-I~~~dp~-------~g~--------- 258 (314)
T d1pjxa_ 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPD-------GGQ--------- 258 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTT-------CBS---------
T ss_pred cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE-EEEEeCC-------CCE---------
Confidence 456677776643322 2223221 223467999999999888777776 7888743 121
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEE-eCCCeEEEEEcCCCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV-SSRGTCHIFVLTPFG 482 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~-S~dgTvhIw~i~~~g 482 (627)
.+..+.- ......+++|.+|++.|.+. +..|+|..+++...|
T Consensus 259 ---~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 259 ---PKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp ---CSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred ---EEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 1111211 11347899999999866554 567888888887655
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=87.97 E-value=3.4 Score=39.43 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=61.8
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..|.|..||..+++....+.........|+|++||+++++...+. ....|+.+.+.. +. ...+
T Consensus 59 ~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~-----~~----------~~~~- 122 (319)
T d2dg1a1 59 FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-----DN----------LQDI- 122 (319)
T ss_dssp TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-----CS----------CEEE-
T ss_pred CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC-----ce----------eeee-
Confidence 456777777777665555655566778999999999988765321 113455543221 11 0111
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeC----CCeEEEEEcCCCCCe
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSS----RGTCHIFVLTPFGGE 484 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~----dgTvhIw~i~~~gg~ 484 (627)
...........++++.+||++.++... +..-.+|.+.+.++.
T Consensus 123 -~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~ 168 (319)
T d2dg1a1 123 -IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 168 (319)
T ss_dssp -ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred -ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce
Confidence 111112234899999999997665432 224457777766543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=81.88 E-value=3.3 Score=39.66 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=60.9
Q ss_pred eEEEEECCCCeE--EEE-eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 366 MVVVKDIVSRSV--ISQ-FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 366 ~V~IwD~~s~~~--l~~-~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.+||..+++- +.. -..|..-....++.+||++++.+..++..+.+||.. +.. + .+
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~-------~~~-----------w--~~ 112 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS-------SDS-----------W--IP 112 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG-------GTE-----------E--EE
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc-------cCc-----------c--cc
Confidence 477899998742 222 223444456778999999999998887778999975 121 1 11
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCC------CeEEEEEcCCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSR------GTCHIFVLTPF 481 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~d------gTvhIw~i~~~ 481 (627)
+-.-.....-...+..+|++.++.++.+ .++++|+....
T Consensus 113 ~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 113 GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 1000000012356778899999998753 36889987654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.12 E-value=3.6 Score=37.68 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=47.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
.....|+++|+|+++++...++. |..|+.. +. .+..+... .-.....|++.++|+.++
T Consensus 140 ~~p~~i~~~~~g~~~v~~~~~~~-i~~~d~~--------~~------------~~~~~~~~-~~~~p~gi~~d~~g~l~v 197 (260)
T d1rwia_ 140 NDPDGVAVDNSGNVYVTDTDNNR-VVKLEAE--------SN------------NQVVLPFT-DITAPWGIAVDEAGTVYV 197 (260)
T ss_dssp CSCCEEEECTTCCEEEEEGGGTE-EEEECTT--------TC------------CEEECCCS-SCCSEEEEEECTTCCEEE
T ss_pred CCcceeeecCCCCEeeecccccc-ccccccc--------cc------------eeeeeecc-ccCCCccceeeeeeeeee
Confidence 34578999999998888777765 6778754 11 11112111 112368999999999888
Q ss_pred EEeCCCeEEEEEc
Q 046828 466 IVSSRGTCHIFVL 478 (627)
Q Consensus 466 s~S~dgTvhIw~i 478 (627)
+-...+.|..|+.
T Consensus 198 sd~~~~~i~~~~~ 210 (260)
T d1rwia_ 198 TEHNTNQVVKLLA 210 (260)
T ss_dssp EETTTTEEEEECT
T ss_pred eecCCCEEEEEeC
Confidence 8777787776654
|