Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 87
cd05941 430
cd05941, MCS, Malonyl-CoA synthetase (MCS)
6e-29 cd05917 347
cd05917, FACL_like_2, Uncharacterized subfamily of
9e-15 COG0318 534
COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/
6e-14 cd05920 483
cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l
1e-13 PRK07787 471
PRK07787, PRK07787, acyl-CoA synthetase; Validated
2e-13 cd05929 342
cd05929, BACL_like, Bacterial Bile acid CoA ligase
4e-13 cd04433 338
cd04433, AFD_class_I, Adenylate forming domain, Cl
1e-12 cd05936 468
cd05936, FC-FACS_FadD_like, Prokaryotic long-chain
3e-12 PRK06187 521
PRK06187, PRK06187, long-chain-fatty-acid--CoA lig
3e-12 cd05922 350
cd05922, FACL_like_6, Uncharacterized subfamily of
1e-11 cd05912 407
cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase
3e-11 PRK07656 513
PRK07656, PRK07656, long-chain-fatty-acid--CoA lig
3e-11 PRK07470 528
PRK07470, PRK07470, acyl-CoA synthetase; Validated
6e-11 cd05959 506
cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
7e-11 cd05903 437
cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li
8e-11 cd05919 436
cd05919, BCL_like, Benzoate CoA ligase (BCL) and s
1e-10 PRK07514 504
PRK07514, PRK07514, malonyl-CoA synthase; Validate
2e-10 cd05934 421
cd05934, FACL_DitJ_like, Uncharacterized subfamily
1e-09 PRK08316 523
PRK08316, PRK08316, acyl-CoA synthetase; Validated
2e-09 PRK07786 542
PRK07786, PRK07786, long-chain-fatty-acid--CoA lig
4e-09 PRK07445 452
PRK07445, PRK07445, O-succinylbenzoic acid--CoA li
1e-08 PRK03640 483
PRK03640, PRK03640, O-succinylbenzoic acid--CoA li
3e-08 cd05926 345
cd05926, FACL_fum10p_like, Subfamily of fatty acid
4e-08 PRK09088 488
PRK09088, PRK09088, acyl-CoA synthetase; Validated
4e-08 cd05935 430
cd05935, LC_FACS_like, Putative long-chain fatty a
8e-08 COG1021 542
COG1021, EntE, Peptide arylation enzymes [Secondar
2e-07 cd12117 474
cd12117, A_NRPS_Srf_like, The adenylation domain o
2e-07 PRK06839 496
PRK06839, PRK06839, acyl-CoA synthetase; Validated
2e-07 PRK06087 547
PRK06087, PRK06087, short chain acyl-CoA synthetas
3e-07 cd05958 487
cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)
3e-07 TIGR02262 508
TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil
3e-07 PRK05605 573
PRK05605, PRK05605, long-chain-fatty-acid--CoA lig
4e-07 PRK07788 549
PRK07788, PRK07788, acyl-CoA synthetase; Validated
4e-07 PRK06178 567
PRK06178, PRK06178, acyl-CoA synthetase; Validated
5e-07 COG0365 528
COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat
8e-07 cd05974 433
cd05974, MACS_like_1, Uncharacterized subfamily of
8e-07 PRK10946 536
PRK10946, entE, enterobactin synthase subunit E; P
8e-07 cd05970 537
cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s
1e-06 PRK08308 414
PRK08308, PRK08308, acyl-CoA synthetase; Validated
1e-06 PRK07638 487
PRK07638, PRK07638, acyl-CoA synthetase; Validated
1e-06 cd05971 439
cd05971, MACS_like_3, Uncharacterized subfamily of
2e-06 PRK06145 497
PRK06145, PRK06145, acyl-CoA synthetase; Validated
2e-06 TIGR01923 436
TIGR01923, menE, O-succinylbenzoate-CoA ligase
3e-06 PRK13382 537
PRK13382, PRK13382, acyl-CoA synthetase; Provision
5e-06 TIGR02275 526
TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP
5e-06 PRK08314 546
PRK08314, PRK08314, long-chain-fatty-acid--CoA lig
6e-06 cd05930 445
cd05930, A_NRPS, The adenylation domain of nonribo
7e-06 PRK08276 502
PRK08276, PRK08276, long-chain-fatty-acid--CoA lig
1e-05 cd12118 520
cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt
1e-05 PRK12492 562
PRK12492, PRK12492, long-chain-fatty-acid--CoA lig
2e-05 cd05972 430
cd05972, MACS_like, Medium-chain acyl-CoA syntheta
2e-05 PRK08008 517
PRK08008, caiC, putative crotonobetaine/carnitine-
2e-05 PRK12583 558
PRK12583, PRK12583, acyl-CoA synthetase; Provision
3e-05 cd05911 487
cd05911, Firefly_Luc_like, Firefly luciferase of l
3e-05 PLN02574 560
PLN02574, PLN02574, 4-coumarate--CoA ligase-like
4e-05 PRK13295 547
PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig
4e-05 cd05945 447
cd05945, DltA, D-alanine:D-alanyl carrier protein
6e-05 cd05923 495
cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)
1e-04 PRK05852 534
PRK05852, PRK05852, acyl-CoA synthetase; Validated
1e-04 PRK05691 4334
PRK05691, PRK05691, peptide synthase; Validated
1e-04 TIGR03205 541
TIGR03205, pimA, dicarboxylate--CoA ligase PimA
2e-04 cd12119 517
cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth
2e-04 PRK07824 358
PRK07824, PRK07824, O-succinylbenzoic acid--CoA li
5e-04 cd12114 476
cd12114, A_NRPS_TlmIV_like, The adenylation domain
5e-04 PRK06164 540
PRK06164, PRK06164, acyl-CoA synthetase; Validated
6e-04 cd05969 443
cd05969, MACS_like_4, Uncharacterized subfamily of
0.001 cd05928 530
cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co
0.001 PRK05677 562
PRK05677, PRK05677, long-chain-fatty-acid--CoA lig
0.001 cd05924 365
cd05924, FACL_like_5, Uncharacterized subfamily of
0.002 PRK12467 3956
PRK12467, PRK12467, peptide synthase; Provisional
0.002 TIGR02372 386
TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase
0.002 TIGR03208 538
TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate
0.002 PRK06018 542
PRK06018, PRK06018, putative acyl-CoA synthetase;
0.003 cd12116 438
cd12116, A_NRPS_Ta1_like, The adenylation domain o
0.003 PLN03051 499
PLN03051, PLN03051, acyl-activating enzyme; Provis
0.004 PRK13391 511
PRK13391, PRK13391, acyl-CoA synthetase; Provision
0.004 PRK08315 559
PRK08315, PRK08315, AMP-binding domain protein; Va
0.004
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)
Back Hide alignment and domain information
Score = 106 bits (266), Expect = 6e-29
Identities = 42/95 (44%), Positives = 53/95 (55%), Gaps = 19/95 (20%)
Query: 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQ 41
S DI+K GGYK+SALEIE LLE + ++ L+L
Sbjct: 336 KSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLA 395
Query: 42 ELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNK 76
EL WA++KLAPYK+P R+ + D LPRNAMGKV K
Sbjct: 396 ELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQK 430
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)
Back Show alignment and domain information
Score = 66.8 bits (164), Expect = 9e-15
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA-----------KRDQE--------KSKPVLSLQELC 44
D++ GG + EIE LL A +R E K L+ +EL
Sbjct: 252 DMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEEELI 311
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+ + +LA +K+P + D LPR A GK+ K +L+
Sbjct: 312 AFCRGRLARFKVPRYVRFVDELPRTASGKIQKFKLR 347
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Score = 64.8 bits (158), Expect = 6e-14
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 21/105 (20%)
Query: 4 DIMKVGGYKLSALEIESVLLE-----------KKAKRDQEK------SKP----VLSLQE 42
D++ GG + EIE+VL E +R E+ KP L+ +E
Sbjct: 425 DLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEE 484
Query: 43 LCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 87
L + + +LA YK+P + D LPR A GK++++ L+ + A+
Sbjct: 485 LRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEP 529
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase
Back Show alignment and domain information
Score = 64.2 bits (157), Expect = 1e-13
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKRDQ-----------EKSK--------PVLSLQELC 44
D + GG K+S EIE++LL A D E+ +L EL
Sbjct: 388 DQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELR 447
Query: 45 TWAKDK-LAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
+ +++ LA +KLP RL + DSLP +GKV+KK L
Sbjct: 448 AFLREQGLAKFKLPDRLEVVDSLPLTPVGKVDKKAL 483
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 63.1 bits (154), Expect = 2e-13
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 19/98 (19%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKAKR--------DQE----------KSKPVLSLQEL 43
S D++K GGY++ A EIE+ LL R D + + V + EL
Sbjct: 373 STDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV-AADEL 431
Query: 44 CTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 81
+ +L+ +K P + D+LPRNAMGKV KK+L +
Sbjct: 432 IDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLS 469
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins
Back Show alignment and domain information
Score = 62.1 bits (152), Expect = 4e-13
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 38 LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
L +EL + +++LA YK+P + D LPRNA GK+ K+EL+
Sbjct: 300 LDAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKILKRELR 342
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I
Back Show alignment and domain information
Score = 60.8 bits (148), Expect = 1e-12
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKA--------KRDQEKS-KPVL----------SLQE 42
S D++KVGG + E+ESVLL+ A D+++ + V +E
Sbjct: 246 SKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEE 305
Query: 43 LCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKV 74
L +++LAPYK+P + D LP+ A GK+
Sbjct: 306 LKAHLRERLAPYKVPRVIEFVDELPKTASGKI 337
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD
Back Show alignment and domain information
Score = 59.8 bits (146), Expect = 3e-12
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 19/96 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLE------------KKAKRDQE-------KSKPVLSLQELC 44
D++ VGG+ + EIE VL R + K L+ +EL
Sbjct: 373 DMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELI 432
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+ +++LA YK+P ++ D LP++A+GK+ ++EL+
Sbjct: 433 AFCRERLAAYKVPRQVEFRDELPKSAVGKILRRELR 468
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 59.8 bits (146), Expect = 3e-12
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 19/103 (18%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKRD-------QEKS--KPV----------LSLQELC 44
D++ GG + E+E L A + EK +PV L +EL
Sbjct: 419 DVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELR 478
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 87
+ + +LA +KLP R+ D LPR ++GK+ K+ L+ Q A +
Sbjct: 479 AFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEGK 521
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)
Back Show alignment and domain information
Score = 58.0 bits (141), Expect = 1e-11
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELC 44
D++K GY++S EIE V+ + L +EL
Sbjct: 255 DMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELL 314
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+ L Y +P + DSLP+NA GKV++ L+
Sbjct: 315 KHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRSALR 350
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)
Back Show alignment and domain information
Score = 56.8 bits (138), Expect = 3e-11
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 9 GGYKLSALEIESVLLEKKAKRD-----QEKSK----PV---------LSLQELCTWAKDK 50
GG + EIE+VLL+ A + + PV +S++EL + DK
Sbjct: 317 GGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPVSVEELQAFLADK 376
Query: 51 LAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 81
LA YK P R + LPRNA GK+++ L+
Sbjct: 377 LAKYKRPKRWYPLPELPRNASGKIDRAALRQ 407
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 56.8 bits (138), Expect = 3e-11
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 19/98 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA-----------KRDQE--------KSKPVLSLQELC 44
D+ VGG+ + E+E VL E A +R E K L+ +EL
Sbjct: 416 DMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELI 475
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 82
+ ++ LA YK+P + D LP+NA GKV K+ L+ +
Sbjct: 476 AYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALREK 513
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 56.2 bits (136), Expect = 6e-11
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 38 LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+ EL W K+A YKLP R F WD+LP++ GK+ KK ++ +L +
Sbjct: 471 VDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER 519
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)
Back Show alignment and domain information
Score = 55.8 bits (135), Expect = 7e-11
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKA-------KRDQEK--SKPV-------------LS 39
S D++KV G +S E+E LL+ A + E +KP
Sbjct: 406 SDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPEL 465
Query: 40 LQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
EL + KDKLAPYK P + D LP+ A GK+ + +L+
Sbjct: 466 ETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKIQRFKLR 506
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)
Back Show alignment and domain information
Score = 55.7 bits (135), Expect = 8e-11
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA-----------KRDQEKS------KP--VLSLQELC 44
DI+ GG +SA EIE +LL A +R E+ P L+L EL
Sbjct: 340 DIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGASLTLAELT 399
Query: 45 TWAKDK-LAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
+ LA K P RL + D+LPR GKV K EL
Sbjct: 400 EHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFEL 435
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes
Back Show alignment and domain information
Score = 55.4 bits (134), Expect = 1e-10
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 24/100 (24%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA-----------------------KRDQEKSKPVLSL 40
D++KV G +S LE+E+ L E A R E + +L
Sbjct: 338 DMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLE- 396
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
++L + +++LAPYK P ++ D+LPR A GK+ + L+
Sbjct: 397 RDLHRFLRERLAPYKCPRQIEFLDTLPRTATGKLQRFRLR 436
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated
Back Show alignment and domain information
Score = 54.9 bits (133), Expect = 2e-10
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 48 KDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
K +LA +K P R+F D LPRN MGKV K L+ Q A
Sbjct: 464 KGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYAD 501
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)
Back Show alignment and domain information
Score = 52.6 bits (127), Expect = 1e-09
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLE------------KKAKRDQE-------KSKPVLSLQELC 44
D ++ G +S+ E+E+ +L + E + L + L
Sbjct: 326 DAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGETLDPEALL 385
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+ +D+L + +P + D LP+ K+ K EL+
Sbjct: 386 EFCRDRLPYFMVPRYIEFVDELPKTPTEKIQKAELR 421
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 51.9 bits (125), Expect = 2e-09
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 33 KSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLA 84
K+ ++ EL + +LA +K+P R+ D LPRN GK+ K+EL+ + A
Sbjct: 467 KAGATVTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYA 518
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 50.9 bits (122), Expect = 4e-09
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 37 VLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
L+L++L + D+LA YK P L + D+LPRN GKV K EL+ + A
Sbjct: 476 ALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGA 524
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed
Back Show alignment and domain information
Score = 49.2 bits (118), Expect = 1e-08
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 19/97 (19%)
Query: 9 GGYKLSALEIESVLLEKKAKRD--------QE----------KSKPVLSLQELCTWAKDK 50
GG + E+E+ +L +D P +SL+EL T KD+
Sbjct: 353 GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQ 412
Query: 51 LAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 87
L+P+K P LPRN GK+N+++L+ Q+A Q+
Sbjct: 413 LSPFKQPKHWIPVPQLPRNPQGKINRQQLQ-QIAVQR 448
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Score = 48.4 bits (116), Expect = 3e-08
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 17/84 (20%)
Query: 17 EIESVLLE----KKA----KRDQE-KSKPV--------LSLQELCTWAKDKLAPYKLPTR 59
EIE VLL +A D + PV ++ +EL + ++KLA YK+P R
Sbjct: 397 EIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFCEEKLAKYKVPKR 456
Query: 60 LFLWDSLPRNAMGKVNKKELKNQL 83
+ + LPRNA GK+ + ELK +
Sbjct: 457 FYFVEELPRNASGKLLRHELKQLV 480
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis
Back Show alignment and domain information
Score = 48.4 bits (116), Expect = 4e-08
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELC 44
+++ GG K+S E+E VLL A + ++ ++++EL
Sbjct: 249 ELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELR 308
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 81
+A+ +LA +K+P ++ D+LP+ A GK+ +++L
Sbjct: 309 DFARKRLAAFKVPKKILFVDALPKGATGKIQRRKLAE 345
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 48.3 bits (115), Expect = 4e-08
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKR--------DQE-----------KSKPVLSLQELC 44
D+ GG + EIE+VL + R D + L L+ +
Sbjct: 385 DMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIR 444
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
+ +LA YK+P L L D+LPR A GK+ K L++ LAA
Sbjct: 445 SHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAA 485
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase
Back Show alignment and domain information
Score = 47.3 bits (113), Expect = 8e-08
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Query: 7 KVGGYKLSALEIESVLLEKKAKR--------DQEKSKPV-------------LSLQELCT 45
V GYK+ E+E++L + A D + + V ++ +++
Sbjct: 337 NVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIE 396
Query: 46 WAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
W ++++A YK P + D LP+ A GKV + L
Sbjct: 397 WCRERMAAYKYPRIIEFVDELPKTASGKVLWRLL 430
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Score = 46.3 bits (110), Expect = 2e-07
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 19/95 (20%)
Query: 9 GGYKLSALEIESVLLEKKAKRDQ-----------EKS-------KPVLSLQELCTWAKDK 50
GG K++A E+E++LL A D EKS +P L +L + +++
Sbjct: 443 GGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRER 502
Query: 51 -LAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLA 84
LA +KLP R+ DSLP A+GK++KK L+ +LA
Sbjct: 503 GLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLA 537
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)
Back Show alignment and domain information
Score = 46.0 bits (110), Expect = 2e-07
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 6 MKVGGYKLSALEIESVLLEK--------KAKRDQEKSK---------PVLSLQELCTWAK 48
+K+ G+++ EIE LL+ + D K L EL
Sbjct: 384 VKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALDAAELRAHLA 443
Query: 49 DKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
++L Y +P + D LP A GKV+++ L
Sbjct: 444 ERLPAYMVPAAFVVLDELPLTANGKVDRRAL 474
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 46.0 bits (109), Expect = 2e-07
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 33 KSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQL 83
KS VL +++ + LA YK+P + LP+NA GK+ K +L NQL
Sbjct: 443 KSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQL 493
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed
Back Show alignment and domain information
Score = 45.9 bits (109), Expect = 3e-07
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 21/102 (20%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKRDQ--------------------EKSKPVLSLQEL 43
DI+ GG +S+ E+E +LL+ D + L+L+E+
Sbjct: 434 DIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEV 493
Query: 44 CTW-AKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLA 84
+ ++ ++A YK P + + D LPR A GK+ K L+ +
Sbjct: 494 VAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIM 535
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)
Back Show alignment and domain information
Score = 45.6 bits (108), Expect = 3e-07
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 23/103 (22%)
Query: 1 TSADIMKV-GGYKLSALEIESVLLEKKA--------KRDQEKSKPV-------------- 37
+D M V GY ++A E+E LL D+E+ + V
Sbjct: 385 ARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATE 444
Query: 38 LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
L + L + K +APYK P + D+LP+ GK+ + L+
Sbjct: 445 LLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKIQRFRLR 487
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family
Back Show alignment and domain information
Score = 45.6 bits (108), Expect = 3e-07
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKA--------KRDQE---KSK-----------PVLS 39
+ D++KV G +S EIES L++ A D++ K K
Sbjct: 406 TDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTAL 465
Query: 40 LQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
EL KD+LAPYK P + D LP+ A GK+ + +L+
Sbjct: 466 ETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLR 506
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 45.4 bits (108), Expect = 4e-07
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+ ++ L YK+P R + D LPR+ +GKV ++E++ +L +
Sbjct: 529 AYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEK 570
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 45.3 bits (108), Expect = 4e-07
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 41 QELCTWAKDKLAPYKLPTR--LFLWDSLPRNAMGKVNKKELKN 81
+ + +D LA YK+P R +FL D LPRN GKV K+EL+
Sbjct: 507 DAIKDYVRDNLARYKVP-RDVVFL-DELPRNPTGKVLKRELRE 547
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 45.0 bits (107), Expect = 5e-07
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 20/101 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA--------KRDQEKSK-PV----------LSLQELC 44
+++KV G + E+E++L + A + D +K + PV L+ L
Sbjct: 466 EMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQ 525
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
W ++ +A YK+P + D+LP A GKV K++L+
Sbjct: 526 AWCRENMAVYKVPEIRIV-DALPMTATGKVRKQDLQALAEE 565
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Back Show alignment and domain information
Score = 44.6 bits (106), Expect = 8e-07
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 2 SADIMKVGGYKLSALEIESVLLE------------KKAKRDQ---------EKSKPVLSL 40
S D++KV G ++ LEIESVLL + Q +P
Sbjct: 418 SDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELA 477
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 87
+E+ + P+ +P ++ D LP+ A GK+ ++ L+ L +
Sbjct: 478 EEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHKGE 524
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)
Back Show alignment and domain information
Score = 44.7 bits (106), Expect = 8e-07
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 26/101 (25%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA------------------------KRDQEKSKPVLS 39
D+ K Y++S E+ES LLE A K E S L+
Sbjct: 332 DVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPS-RELA 390
Query: 40 LQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
L EL +++LAPYK R+ LP+ GK+ + EL+
Sbjct: 391 L-ELFAHVRERLAPYKRIRRIEFVGELPKTISGKIRRVELR 430
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional
Back Show alignment and domain information
Score = 44.6 bits (106), Expect = 8e-07
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 30/103 (29%)
Query: 9 GGYKLSALEIESVLLEKKA-----------KRDQEKS----------KPVL---SLQELC 44
GG K++A EIE++LL A + EKS K V L+E
Sbjct: 438 GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQ- 496
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 87
+A +KLP R+ DSLP A+GKV+KK+L+ LA++
Sbjct: 497 -----GIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like
Back Show alignment and domain information
Score = 44.0 bits (104), Expect = 1e-06
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA------------KRDQE-KSKPVLS---------LQ 41
D++K GY++ E+ES L++ A R Q K+ VL+ +
Sbjct: 436 DLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKK 495
Query: 42 ELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 81
EL K APYK P + D LP+ GK+ + E++
Sbjct: 496 ELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEIRE 535
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 43.9 bits (104), Expect = 1e-06
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKRD-----------------QEKSKPVLSLQELCTW 46
D++ V G + +E+E V+L ++ + S + +L W
Sbjct: 315 DVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEIDPVQLREW 374
Query: 47 AKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
LAPY++P + +P+NA GKV++K L+
Sbjct: 375 CIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 43.6 bits (103), Expect = 1e-06
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 9 GGYKLSALEIESVLLEKKAKR---------DQEKSKPVLSL------QELCTWAKDKLAP 53
GG + EIESVL E A KPV + Q+L ++ +L+
Sbjct: 390 GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQRLSS 449
Query: 54 YKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+K+P D +P GK+ + E K+ + Q
Sbjct: 450 FKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ 482
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)
Back Show alignment and domain information
Score = 43.5 bits (103), Expect = 2e-06
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 28/102 (27%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA--------KRDQEKSKPV-----------------L 38
D++K GY++ EIE LL+ A D E+ + V
Sbjct: 340 DVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEGVEPSDELAT 399
Query: 39 SLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
LQEL K +LA ++ P + D LP GK+ ++EL+
Sbjct: 400 ELQEL---VKSRLAAHEYPREIEFVDELPMTTTGKIRRRELR 438
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 43.3 bits (102), Expect = 2e-06
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 38 LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQL 83
L+L+ L + +LA +K+P +L + D LPRN GKV K+ L+++L
Sbjct: 450 LTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDEL 495
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase
Back Show alignment and domain information
Score = 42.8 bits (101), Expect = 3e-06
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 4 DIMKVGGYKLSALEIESVLLEKK--------AKRDQEKSK-PVLSLQ--------ELCTW 46
D++ GG + EIE+VL + K D E + PV + +L +
Sbjct: 344 DLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDISQAKLIAY 403
Query: 47 AKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
+KLA YK+P D LP NA GK+ + +L
Sbjct: 404 LTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Score = 42.4 bits (100), Expect = 5e-06
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+ L +D LA YK+P + + D LPR A GK+ ++EL+
Sbjct: 496 ETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQ 535
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase
Back Show alignment and domain information
Score = 42.1 bits (99), Expect = 5e-06
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 19/91 (20%)
Query: 9 GGYKLSALEIESVLLEKKAKRDQ-----------EKS-------KPVLSLQELCTWAKDK 50
GG K++A EIE++LL A D EKS P L +L + +++
Sbjct: 436 GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRER 495
Query: 51 -LAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
LA YKLP R+ DSLP A+GKV+KK L+
Sbjct: 496 GLAEYKLPDRVEFVDSLPLTAVGKVDKKALR 526
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 42.3 bits (100), Expect = 6e-06
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 8 VGGYKLSALEIESVLLEKKA--------KRDQ---EKSKPVLSL----------QELCTW 46
G+K+ E+E++L + A D E K V+ L +E+ W
Sbjct: 444 ASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAW 503
Query: 47 AKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 87
A++ +A YK P + DSLP++ GK+ ++L+ Q A+
Sbjct: 504 AREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKARA 544
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)
Back Show alignment and domain information
Score = 41.7 bits (99), Expect = 7e-06
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 7 KVGGYKLSALEIESVLLE----KKA----KRDQEKSK-----------PVLSLQELCTWA 47
K+ GY++ EIE+ LL ++A + D K L EL +
Sbjct: 354 KIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFL 413
Query: 48 KDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
++L Y +P+ + D+LP GKV++K L
Sbjct: 414 AERLPDYMVPSAFVVLDALPLTPNGKVDRKAL 445
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 41.0 bits (97), Expect = 1e-05
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
EL W + +LA YK P + D LPR GK+ K+ L+
Sbjct: 452 AELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLR 491
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis
Back Show alignment and domain information
Score = 41.1 bits (97), Expect = 1e-05
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 22/100 (22%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKK--------AKRDQE-----------KSKPVLSLQE 42
S DI+ GG +S++E+E VL + A+ D++ K ++ +E
Sbjct: 423 SKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEE 482
Query: 43 LCTWAKDKLAPYKLPTRL-FLWDSLPRNAMGKVNKKELKN 81
L + ++KLA +K+P + F+ LP+ A GK+ K L+
Sbjct: 483 LIEYCREKLAHFKVPKTVEFV--ELPKTATGKIQKFVLRE 520
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Score = 41.0 bits (96), Expect = 2e-05
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA-----------KRDQEKSK-------PVLSLQELCT 45
D++ V G+ + EIE V++ +R E K P LS++EL
Sbjct: 465 DLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKA 524
Query: 46 WAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 81
+ K+ YK+P + L DSLP +GK+ ++EL++
Sbjct: 525 YCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRD 560
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)
Back Show alignment and domain information
Score = 40.8 bits (96), Expect = 2e-05
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 22/99 (22%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA--------KRDQEKS---KPVLSLQ----------- 41
D++K GY++ E+ES L+E A D + K + L
Sbjct: 331 DVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEELAK 390
Query: 42 ELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
EL K + APYK P + + LP+ GK+ + EL+
Sbjct: 391 ELQEHVKKRTAPYKYPREIEFVEELPKTVSGKIRRVELR 429
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated
Back Show alignment and domain information
Score = 40.4 bits (95), Expect = 2e-05
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 19/98 (19%)
Query: 2 SADIMKVGGYKLSALEIESVLLE------------KKAKRDQEKSKPV-------LSLQE 42
+++K GG +S +E+E+++ K + RD+ V LS +E
Sbjct: 420 RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEE 479
Query: 43 LCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+ + +A +K+P+ L + LPRN GK+ KK LK
Sbjct: 480 FFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Score = 40.1 bits (94), Expect = 3e-05
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 38 LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNK 76
S +EL + K ++A +K+P D P GKV K
Sbjct: 505 ASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQK 543
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)
Back Show alignment and domain information
Score = 39.9 bits (94), Expect = 3e-05
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 20/92 (21%)
Query: 4 DIMKVGGYKLSALEIESVLLE-----------KKAKRDQE--------KSKPVLSLQELC 44
+++K GY++ E+E+VLLE + E K L+ QE+
Sbjct: 396 ELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVK 455
Query: 45 TWAKDKLAPYK-LPTRLFLWDSLPRNAMGKVN 75
+ K+A YK L + D +P++ GK+
Sbjct: 456 DYVAKKVAKYKQLRGGVVFVDEIPKSPSGKIL 487
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like
Back Show alignment and domain information
Score = 39.8 bits (93), Expect = 4e-05
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 4 DIMKVGGYKLSALEIESVLLEK--------KAKRDQE-----------KSKPVLSLQELC 44
+I+K G++++ ++E+VL+ A D+E + LS + +
Sbjct: 454 EIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVI 513
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
+ ++APYK ++ S+P++ GK+ ++ELK L
Sbjct: 514 NYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTN 554
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed
Back Show alignment and domain information
Score = 39.7 bits (93), Expect = 4e-05
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 20/106 (18%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKA-----------KRDQEKS------KP--VLSLQE 42
S D++ GG + +EIE++L A +R E++ +P L +E
Sbjct: 441 SKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEE 500
Query: 43 LCTWAKD-KLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 87
+ + K K+A +P RL + D+LPR GK+ K L+ L +
Sbjct: 501 MVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRGED 546
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)
Back Show alignment and domain information
Score = 39.1 bits (92), Expect = 6e-05
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 7 KVGGYKLSALEIESVLL----------EKKAKRDQEK--------SKPVLSLQELCTWAK 48
K+ GY++ EIE+ L K ++ + L + L K
Sbjct: 357 KLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDTKALKKELK 416
Query: 49 DKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
+L PY +P R DSLP NA GK+++K L
Sbjct: 417 KRLPPYMIPRRFVYLDSLPLNANGKIDRKAL 447
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)
Back Show alignment and domain information
Score = 38.7 bits (90), Expect = 1e-04
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 38 LSLQELCTWAKD-KLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
LS L T+ + +LA +K P R F D LP+NAM KV +++L
Sbjct: 453 LSADALDTFCRASELADFKRPRRYFFLDELPKNAMNKVLRRQL 495
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 38.7 bits (90), Expect = 1e-04
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 39 SLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+ +EL + +++LA +++P LP A G ++++ + Q
Sbjct: 486 TAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGHS 533
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated
Back Show alignment and domain information
Score = 38.6 bits (90), Expect = 1e-04
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 21/94 (22%)
Query: 7 KVGGYKLSALEIESVLLEKKAKRD---------------------QEKSKPVLSLQELCT 45
K+ GY++ EIE+ L E+ R+ Q L+ +
Sbjct: 4129 KIRGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQGALLERIKQ 4188
Query: 46 WAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
+ +L Y +P D LP NA GK+++K L
Sbjct: 4189 RLRAELPDYMVPLHWLWLDRLPLNANGKLDRKAL 4222
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA
Back Show alignment and domain information
Score = 38.0 bits (88), Expect = 2e-04
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 31 QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+ +KP SL EL + KL ++LP + D LPR +GK+++ EL+
Sbjct: 493 RPGAKP-FSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles
Back Show alignment and domain information
Score = 37.6 bits (88), Expect = 2e-04
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 81
+EL K+A + LP R+ D +P+ ++GK +KK L+
Sbjct: 477 EELLEHLAKKVAKWWLPDRVVFVDEIPKTSVGKFDKKALRE 517
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Score = 36.6 bits (85), Expect = 5e-04
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 36 PVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
P +L+ L L P L + D LPR +GKV+++ L + A +
Sbjct: 308 PAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAGE 358
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes
Back Show alignment and domain information
Score = 36.4 bits (85), Expect = 5e-04
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 7 KVGGYKLSALEIESVLLE----KKA---KRDQEKSK-----------PVLSLQELCTWAK 48
K+ GY++ EIE+ L ++A +K + L
Sbjct: 386 KIRGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDAAVLRAALA 445
Query: 49 DKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
+ L Y +P+R + D+LP A GKV++K L
Sbjct: 446 ELLPAYMVPSRFVVLDALPLTANGKVDRKAL 476
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 36.3 bits (84), Expect = 6e-04
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKRD--------QEKSKPV----------LSLQELCT 45
D +++GG+ ++ EIE L K+ PV L
Sbjct: 430 DSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMA 489
Query: 46 WAKDKLAPYKLPTRLFLWDSLPRNAMG---KVNKKELKNQ----LAAQQ 87
++ LA +K+P R+ + ++ P K+ K L+ LAA++
Sbjct: 490 ACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAAER 538
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)
Back Show alignment and domain information
Score = 35.9 bits (83), Expect = 0.001
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 22/99 (22%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA--------KRDQ---EKSKPVLSLQ----------- 41
D++K G+ + E+ES L+E A K D E K +SL+
Sbjct: 344 DVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEELRR 403
Query: 42 ELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
EL T+A+ +L P + D+LP+ GK+ ++ LK
Sbjct: 404 ELLTFARQRLGAAVAPREIHFVDNLPKTRSGKIMRRLLK 442
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)
Back Show alignment and domain information
Score = 35.5 bits (82), Expect = 0.001
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 24/105 (22%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKA-------------KRDQEKSKPVLSLQ------- 41
+ D++ GY++ E+ES L+E A + + K+ VL+ Q
Sbjct: 424 ADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPE 483
Query: 42 ----ELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 82
EL K APYK P ++ LP+ GK+ + EL+++
Sbjct: 484 QLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 35.5 bits (82), Expect = 0.001
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 33 KSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 87
K L+ +++ + L YK+P + D LP +GK+ ++EL+++ +
Sbjct: 505 KPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKA 559
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)
Back Show alignment and domain information
Score = 34.6 bits (80), Expect = 0.002
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 38 LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
L L EL + LA YKLP + + D++PR GK + + K
Sbjct: 323 LDLAELRDHCRQHLAGYKLPRAIVVVDTVPRAPSGKADYRWAK 365
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional
Back Show alignment and domain information
Score = 34.8 bits (80), Expect = 0.002
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 23/96 (23%)
Query: 7 KVGGYKLSALEIESVLLEKKAKRD-----------------------QEKSKPVLSLQEL 43
K+ G+++ EIE+ LL + R+ + ++ + EL
Sbjct: 917 KIRGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDEL 976
Query: 44 CTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
+ L Y +P L L DSLP GK+++K L
Sbjct: 977 KAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKAL 1012
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family
Back Show alignment and domain information
Score = 34.9 bits (80), Expect = 0.002
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 16/87 (18%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKR------DQEKSKPVLSL----------QELCTWA 47
+I++VGG +S + +L R D + K + + EL A
Sbjct: 299 EILQVGGVNVSPGHVRDILERNPRVRAAAVRLDGRRLKAFIVVAEDADEAELEIELRATA 358
Query: 48 KDKLAPYKLPTRLFLWDSLPRNAMGKV 74
L P R LPR GK+
Sbjct: 359 ARHLPAPARPDRFRFGTELPRTGAGKL 385
This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase
Back Show alignment and domain information
Score = 34.9 bits (80), Expect = 0.002
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKA-----------KRDQEKSKPVLSLQELCTWAK-- 48
S D++ GG + +EIE++L + A +R E++ V+ + CT
Sbjct: 439 SKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAA 498
Query: 49 -------DKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
K+A +P RL + D+LP GK+ K L+
Sbjct: 499 MVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Score = 34.7 bits (80), Expect = 0.003
Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 29/107 (27%)
Query: 2 SADIMKVGGYKLSALEIESV------------------------LLEKKAKRDQEKSKPV 37
S D++K GG +S++++E++ LL + K + ++
Sbjct: 432 SKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATR-- 489
Query: 38 LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLA 84
+E+ + K+A + +P + D++P A GK+ K L+ Q
Sbjct: 490 ---EEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFK 533
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase
Back Show alignment and domain information
Score = 34.5 bits (80), Expect = 0.003
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 7 KVGGYKLSALEIESVLLE----------KKAKRDQE---------KSKPVLSLQELCTWA 47
K+ G+++ EIE+ L + + + K+ + L
Sbjct: 347 KIRGFRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAAPDAEALRAAL 406
Query: 48 KDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
+ L Y +P D LP GKV++K L
Sbjct: 407 RATLPAYMVPAAFVQLDELPLTPNGKVDRKAL 438
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional
Back Show alignment and domain information
Score = 34.0 bits (78), Expect = 0.004
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 31/110 (28%)
Query: 4 DIMKVGGYKLSALEIES-----------------------------VLLEKKAKRDQEKS 34
D M +GG K S++EIE L+ + K+ +++
Sbjct: 381 DTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQA 440
Query: 35 KPVLSLQELCTWA-KDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQL 83
+P +LQ+ A + L P +R+ + LPRNA K+ ++ L++QL
Sbjct: 441 RPE-ALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQL 489
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Score = 33.9 bits (78), Expect = 0.004
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 82
EL + + +L+ K P + D LPR GK+ K+ L+++
Sbjct: 465 AELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDR 506
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated
Back Show alignment and domain information
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 38 LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
L+ +++ + + K+A YK+P + D P GK+ K +++ + +
Sbjct: 504 LTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEE 552
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
87
KOG1176 537
consensus Acyl-CoA synthetase [Lipid transport and
99.87 TIGR01217 652
ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym
99.8 PRK07824 358
O-succinylbenzoic acid--CoA ligase; Provisional
99.8 PRK03584 655
acetoacetyl-CoA synthetase; Provisional
99.79 PRK07445 452
O-succinylbenzoic acid--CoA ligase; Reviewed
99.79 COG0318 534
CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l
99.79 KOG1177 596
consensus Long chain fatty acid acyl-CoA ligase [L
99.79 COG0365 528
Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l
99.78 PLN02654 666
acetate-CoA ligase
99.78 PTZ00237 647
acetyl-CoA synthetase; Provisional
99.78 TIGR02316 628
propion_prpE propionate--CoA ligase. This family c
99.77 PRK07788 549
acyl-CoA synthetase; Validated
99.77 KOG1175 626
consensus Acyl-CoA synthetase [Lipid transport and
99.77 PRK08279 600
long-chain-acyl-CoA synthetase; Validated
99.76 PLN03051 499
acyl-activating enzyme; Provisional
99.76 PRK08043 718
bifunctional acyl-[acyl carrier protein] synthetas
99.75 TIGR02188 625
Ac_CoA_lig_AcsA acetate--CoA ligase. This model de
99.75 PLN02574 560
4-coumarate--CoA ligase-like
99.75 PRK00174 637
acetyl-CoA synthetase; Provisional
99.75 PRK07529 632
AMP-binding domain protein; Validated
99.74 PRK10524 629
prpE propionyl-CoA synthetase; Provisional
99.74 PRK05677 562
long-chain-fatty-acid--CoA ligase; Validated
99.73 PRK06155 542
crotonobetaine/carnitine-CoA ligase; Provisional
99.73 PRK07008 539
long-chain-fatty-acid--CoA ligase; Validated
99.73 PRK07868 994
acyl-CoA synthetase; Validated
99.73 PRK05851 525
long-chain-fatty-acid--[acyl-carrier-protein] liga
99.72 PRK06334 539
long chain fatty acid--[acyl-carrier-protein] liga
99.72 PRK06060 705
acyl-CoA synthetase; Validated
99.72 PLN02246 537
4-coumarate--CoA ligase
99.72 COG1021 542
EntE Peptide arylation enzymes [Secondary metaboli
99.72 PRK07867 529
acyl-CoA synthetase; Validated
99.72 PRK09029 458
O-succinylbenzoic acid--CoA ligase; Provisional
99.72 PRK07470 528
acyl-CoA synthetase; Validated
99.72 PRK08314 546
long-chain-fatty-acid--CoA ligase; Validated
99.71 PRK09088 488
acyl-CoA synthetase; Validated
99.71 PLN03052 728
acetate--CoA ligase; Provisional
99.71 PLN03102 579
acyl-activating enzyme; Provisional
99.71 PRK04319 570
acetyl-CoA synthetase; Provisional
99.71 PRK05852 534
acyl-CoA synthetase; Validated
99.7 PLN02860 563
o-succinylbenzoate-CoA ligase
99.7 PRK13388 540
acyl-CoA synthetase; Provisional
99.7 PRK06839 496
acyl-CoA synthetase; Validated
99.7 PRK07638 487
acyl-CoA synthetase; Validated
99.7 PRK05620 576
long-chain-fatty-acid--CoA ligase; Validated
99.7 PRK06710 563
long-chain-fatty-acid--CoA ligase; Validated
99.7 PRK06145 497
acyl-CoA synthetase; Validated
99.7 PRK06018 542
putative acyl-CoA synthetase; Provisional
99.7 PRK05605 573
long-chain-fatty-acid--CoA ligase; Validated
99.7 PRK08308 414
acyl-CoA synthetase; Validated
99.69 PRK07798 533
acyl-CoA synthetase; Validated
99.69 PRK13382 537
acyl-CoA synthetase; Provisional
99.69 PRK12583 558
acyl-CoA synthetase; Provisional
99.69 PRK13295 547
cyclohexanecarboxylate-CoA ligase; Reviewed
99.68 PRK07514 504
malonyl-CoA synthase; Validated
99.68 PRK06814 1140
acylglycerophosphoethanolamine acyltransferase; Pr
99.68 PRK06188 524
acyl-CoA synthetase; Validated
99.68 PRK08316 523
acyl-CoA synthetase; Validated
99.68 PRK07786 542
long-chain-fatty-acid--CoA ligase; Validated
99.67 PRK13390 501
acyl-CoA synthetase; Provisional
99.67 TIGR03098 515
ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor
99.67 PRK03640 483
O-succinylbenzoic acid--CoA ligase; Provisional
99.67 PRK12406 509
long-chain-fatty-acid--CoA ligase; Provisional
99.67 TIGR01734 502
D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig
99.67 TIGR02372 386
4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv
99.66 PLN02330 546
4-coumarate--CoA ligase-like 1
99.66 PRK08315 559
AMP-binding domain protein; Validated
99.66 PRK06178 567
acyl-CoA synthetase; Validated
99.66 PRK06187 521
long-chain-fatty-acid--CoA ligase; Validated
99.66 PRK12492 562
long-chain-fatty-acid--CoA ligase; Provisional
99.66 PRK08008 517
caiC putative crotonobetaine/carnitine-CoA ligase;
99.65 TIGR03443 1389
alpha_am_amid L-aminoadipate-semialdehyde dehydrog
99.65 PRK08751 560
putative long-chain fatty acyl CoA ligase; Provisi
99.65 PRK06164 540
acyl-CoA synthetase; Validated
99.65 PRK09274 552
peptide synthase; Provisional
99.65 PRK05857 540
acyl-CoA synthetase; Validated
99.65 PRK12316 5163
peptide synthase; Provisional
99.65 PRK07769 631
long-chain-fatty-acid--CoA ligase; Validated
99.65 PRK12467 3956
peptide synthase; Provisional
99.64 TIGR02275 527
DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot
99.64 PRK07656 513
long-chain-fatty-acid--CoA ligase; Validated
99.64 PRK13391 511
acyl-CoA synthetase; Provisional
99.64 PRK10946 536
entE enterobactin synthase subunit E; Provisional
99.63 PRK07059 557
Long-chain-fatty-acid--CoA ligase; Validated
99.63 TIGR03208 538
cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.
99.63 PRK13383 516
acyl-CoA synthetase; Provisional
99.63 PRK07787 471
acyl-CoA synthetase; Validated
99.63 PRK12316 5163
peptide synthase; Provisional
99.63 PRK08276 502
long-chain-fatty-acid--CoA ligase; Validated
99.63 PRK12476 612
putative fatty-acid--CoA ligase; Provisional
99.62 PRK10252 1296
entF enterobactin synthase subunit F; Provisional
99.62 PRK08633 1146
2-acyl-glycerophospho-ethanolamine acyltransferase
99.62 PRK08974 560
long-chain-fatty-acid--CoA ligase; Validated
99.62 PRK04813 503
D-alanine--poly(phosphoribitol) ligase subunit 1;
99.62 TIGR01923 436
menE O-succinylbenzoate-CoA ligase. This model rep
99.61 TIGR03205 541
pimA dicarboxylate--CoA ligase PimA. PimA, a membe
99.6 PRK08162 545
acyl-CoA synthetase; Validated
99.59 PRK05691 4334
peptide synthase; Validated
99.59 PRK06087 547
short chain acyl-CoA synthetase; Reviewed
99.59 PRK09192 579
acyl-CoA synthetase; Validated
99.58 PRK05691 4334
peptide synthase; Validated
99.58 PRK12467 3956
peptide synthase; Provisional
99.58 PRK09188 365
serine/threonine protein kinase; Provisional
99.57 PLN02479 567
acetate-CoA ligase
99.56 TIGR02262 508
benz_CoA_lig benzoate-CoA ligase family. Character
99.53 PRK05850 578
acyl-CoA synthetase; Validated
99.47 PLN02736 651
long-chain acyl-CoA synthetase
99.45 PRK07768 545
long-chain-fatty-acid--CoA ligase; Validated
99.41 KOG1178 1032
consensus Non-ribosomal peptide synthetase/alpha-a
99.32 PLN02387 696
long-chain-fatty-acid-CoA ligase family protein
99.15 PLN02614 666
long-chain acyl-CoA synthetase
99.14 PLN02861 660
long-chain-fatty-acid-CoA ligase
99.14 PF13193 73
AMP-binding_C: AMP-binding enzyme C-terminal domai
99.09 PRK08180 614
feruloyl-CoA synthase; Reviewed
98.97 TIGR02155 422
PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet
98.95 PTZ00216 700
acyl-CoA synthetase; Provisional
98.94 PLN02430 660
long-chain-fatty-acid-CoA ligase
98.92 KOG1179 649
consensus Very long-chain acyl-CoA synthetase/fatt
98.87 PRK12582 624
acyl-CoA synthetase; Provisional
98.8 PTZ00342 746
acyl-CoA synthetase; Provisional
98.72 PF14535 96
AMP-binding_C_2: AMP-binding enzyme C-terminal dom
98.27 TIGR03335 445
F390_ftsA coenzyme F390 synthetase. This enzyme, c
98.15 PTZ00297 1452
pantothenate kinase; Provisional
98.09 KOG1256 691
consensus Long-chain acyl-CoA synthetases (AMP-for
97.72 TIGR01733 408
AA-adenyl-dom amino acid adenylation domain. This
97.57 COG1541 438
PaaK Coenzyme F390 synthetase [Coenzyme metabolism
97.51 KOG1180 678
consensus Acyl-CoA synthetase [Lipid transport and
97.38 COG1022 613
FAA1 Long-chain acyl-CoA synthetases (AMP-forming)
96.77 KOG3628 1363
consensus Predicted AMP-binding protein [General f
93.96 TIGR02304 430
aden_form_hyp probable adenylate-forming enzyme. M
81.22
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Back Hide alignment and domain information
Probab=99.87 E-value=8.7e-22 Score=131.89 Aligned_cols=85 Identities=31% Similarity=0.500 Sum_probs=77.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc-------------------ccccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK-------------------RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v-------------------~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+||++|++|+|.|||++|..||.| .+....+...+.++|.++|+.+++.|+.|..+.
T Consensus 429 R~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~ 508 (537)
T KOG1176|consen 429 RSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVV 508 (537)
T ss_pred chhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhccCeEE
Confidence 8999999999999999999999999966 122234678889999999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|++++|+|++||+.|+.|++.+..
T Consensus 509 Fvd~lPKs~~GKi~R~~lr~~~~~ 532 (537)
T KOG1176|consen 509 FVDELPKTPNGKILRRKLRDIAKK 532 (537)
T ss_pred EeccCCCCCcchHHHHHHHHHHHh
Confidence 999999999999999999999875
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase
Back Show alignment and domain information
Probab=99.80 E-value=2.9e-19 Score=122.01 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=71.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+ .++|.++++++|++|++|.
T Consensus 520 R~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 599 (652)
T TIGR01217 520 RSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPD 599 (652)
T ss_pred cccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCC
Confidence 89999999999999999999999999651 1111122222 2579999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.++++||+|++||++|+.|++.+.+
T Consensus 600 ~i~~v~~lP~T~sGKi~r~~Lr~~~~~ 626 (652)
T TIGR01217 600 EIIEVPGIPHTLTGKRVEVAVKRVLQG 626 (652)
T ss_pred EEEECCCCCCCCCccChHHHHHHHHcC
Confidence 999999999999999999999998754
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.80 E-value=6.2e-19 Score=112.76 Aligned_cols=85 Identities=25% Similarity=0.395 Sum_probs=73.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+||++|.+|+|.+||.+|.+||.|. +....+.....+++..++++.++.|++|..+.
T Consensus 254 R~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~ 333 (358)
T PRK07824 254 RADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELH 333 (358)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCccccCCCEEE
Confidence 88999999999999999999999999651 01112234567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||+|++||++|+.|++.|.+
T Consensus 334 ~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 334 VVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred EecCCCCCCCccccHHHHHHHhhc
Confidence 999999999999999999998864
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.79 E-value=6.2e-19 Score=120.15 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=71.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+||.|.. ....+...+ .+++.++++++|++|++|.
T Consensus 519 R~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~ 598 (655)
T PRK03584 519 RSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPD 598 (655)
T ss_pred eccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCC
Confidence 899999999999999999999999996610 011111222 2578999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.|.+++++|+|+|||++|+.|++.+.+
T Consensus 599 ~i~~v~~lP~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 599 KIIAVPDIPRTLSGKKVELPVKKLLHG 625 (655)
T ss_pred EEEECCCCCCCCCccchHHHHHHHHcC
Confidence 999999999999999999999998754
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Back Show alignment and domain information
Probab=99.79 E-value=1e-18 Score=115.12 Aligned_cols=85 Identities=29% Similarity=0.464 Sum_probs=73.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc---cc---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR---DQ---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~---~~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|+||+|.|||++|.+||.|. +. .......+.+++.++++++|+.|++|..+.+
T Consensus 345 R~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~ 424 (452)
T PRK07445 345 RNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQLSPFKQPKHWIP 424 (452)
T ss_pred ecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCCCHHHHHHHHHHhCCcccCCeEEEE
Confidence 88999999999999999999999999661 00 0112234578899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHHHHh
Q 046846 63 WDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++|+|++||++|..|++.+.+
T Consensus 425 v~~lP~t~~GKi~r~~L~~~~~~ 447 (452)
T PRK07445 425 VPQLPRNPQGKINRQQLQQIAVQ 447 (452)
T ss_pred ecCCCCCCCcccCHHHHHHHHHH
Confidence 99999999999999999998865
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.79 E-value=8.6e-19 Score=117.54 Aligned_cols=85 Identities=33% Similarity=0.501 Sum_probs=73.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCC--CCCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSK--PVLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|.||+|+++|+||+|.|||.++.+||.|. +....+ ...+.+++.++|+.+++.|+.|+.
T Consensus 422 R~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~ 501 (534)
T COG0318 422 RLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRI 501 (534)
T ss_pred ccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeE
Confidence 78999999999999999999999999551 011111 233789999999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+++++|+|++||++|+.|++.+..
T Consensus 502 v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 502 VVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred EEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999998764
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=99.79 E-value=6.9e-19 Score=115.59 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=73.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCC--CCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKP--VLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~--~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+||||+.||+||+|.|||+.|.+||.|. +....+. ..+.+.|+.+|+.+++-|++|++
T Consensus 482 RskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky 561 (596)
T KOG1177|consen 482 RSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKY 561 (596)
T ss_pred cccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcE
Confidence 78999999999999999999999999551 1111222 25788999999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.++++||+|.+|||++.+++++..+
T Consensus 562 ~vf~~~FPlT~tGKIqKFeir~~~k~ 587 (596)
T KOG1177|consen 562 FVFVDEFPLTTTGKIQKFEIREMSKG 587 (596)
T ss_pred EEEeccCcccccccchhHHHHHHHHh
Confidence 99999999999999999999998763
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Back Show alignment and domain information
Probab=99.78 E-value=7.4e-19 Score=117.66 Aligned_cols=84 Identities=30% Similarity=0.446 Sum_probs=70.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCC--CCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPV--LSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|.||+||+.|++|+|.|||++|.+||.|. +....+.. ...++|.+++++.+.++..|+.
T Consensus 417 R~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~~ 496 (528)
T COG0365 417 RSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRK 496 (528)
T ss_pred eccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHHHHHHHHHHHhccCcccCCce
Confidence 89999999999999999999999999651 11111111 3356788888888888999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHH
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
|.++++||+|.||||.|+.|++.+.
T Consensus 497 i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 497 IRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred EEEecCCCCCCcccHHHHHHHHHHh
Confidence 9999999999999999999999876
>PLN02654 acetate-CoA ligase
Back Show alignment and domain information
Probab=99.78 E-value=1.5e-18 Score=118.71 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=70.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+ .++|..+++++|+.+++|.
T Consensus 534 R~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~ 613 (666)
T PLN02654 534 RVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPD 613 (666)
T ss_pred eccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCC
Confidence 89999999999999999999999999651 1111122222 2478889999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.++++||+|.|||++|+.|++.+.+
T Consensus 614 ~i~~v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 614 KIHWAPGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred EEEECCCCCCCCCcCchHHHHHHHHcC
Confidence 999999999999999999999998754
>PTZ00237 acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.78 E-value=2e-18 Score=117.83 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=70.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccC---CCCCCCH----HHHHHHHHhhCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEK---SKPVLSL----QELCTWAKDKLAPY 54 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~---~~~~~~~----~~l~~~~~~~l~~~ 54 (87)
|+||+||++|+||+|.|||++|..||.|. +... .+...+. ++|.++++++|+++
T Consensus 513 R~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~ 592 (647)
T PTZ00237 513 RSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESL 592 (647)
T ss_pred ccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCcc
Confidence 89999999999999999999999999651 1111 1112232 45678889999999
Q ss_pred CCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 55 KLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 55 ~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++|+.|.++++||+|+|||++|+.|++++.+
T Consensus 593 ~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 623 (647)
T PTZ00237 593 AVLRKIIIVNQLPKTKTGKIPRQIISKFLND 623 (647)
T ss_pred ccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence 9999999999999999999999999998754
>TIGR02316 propion_prpE propionate--CoA ligase
Back Show alignment and domain information
Probab=99.77 E-value=1.6e-18 Score=117.78 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=70.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCC--------CCHHHHHHHHHhhCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPV--------LSLQELCTWAKDKLAP 53 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~--------~~~~~l~~~~~~~l~~ 53 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+.. ...++|.++++++|++
T Consensus 493 R~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~ 572 (628)
T TIGR02316 493 RTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGA 572 (628)
T ss_pred cCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999651 00111111 1246799999999999
Q ss_pred CCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 54 YKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 54 ~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|++|..+.+++++|+|+|||++|+.|++.+.+
T Consensus 573 ~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 573 VARPARVYFVAALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred CcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence 99999999999999999999999999988754
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
>PRK07788 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.77 E-value=2.4e-18 Score=115.03 Aligned_cols=82 Identities=29% Similarity=0.479 Sum_probs=70.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+||++|++|+|.+||++|.+||.|. +....+...+.+++.++++++|+.|++|..+.
T Consensus 448 R~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~ 527 (549)
T PRK07788 448 RDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVV 527 (549)
T ss_pred cCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEE
Confidence 89999999999999999999999999651 11112334567899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~ 82 (87)
+++++|+|++||++|+.|+++
T Consensus 528 ~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 528 FLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred EeCCCCCCCCcCEeHHHhhcc
Confidence 999999999999999999753
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=99.77 E-value=8.9e-19 Score=118.51 Aligned_cols=86 Identities=27% Similarity=0.457 Sum_probs=72.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCC---CCCCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSK---PVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~---~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+||++|+++++.|||+++.+||.|. +....+ .+....+|..+++..+.++..|+
T Consensus 496 R~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~ 575 (626)
T KOG1175|consen 496 RVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPR 575 (626)
T ss_pred cccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccc
Confidence 89999999999999999999999999651 111122 22234678889999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHhc
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.|.+++.||+|.|||+.|+.|+++..+.
T Consensus 576 ~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 576 LIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred eeEecCCCCccccchhHHHHHHHHhccC
Confidence 9999999999999999999999998653
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.76 E-value=2e-18 Score=116.53 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=72.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc--------------------cCCCCCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ--------------------EKSKPVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~--------------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|.||+||++|++|+|.|||++|.+||.|... ...+...+.+++.++|+++|+.|++|..+
T Consensus 460 R~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i 539 (600)
T PRK08279 460 RLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFV 539 (600)
T ss_pred ccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEE
Confidence 7899999999999999999999999965110 01123456789999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
.+++++|+|.+||++|..|++.+.
T Consensus 540 ~~v~~lP~t~~GKi~r~~L~~~~~ 563 (600)
T PRK08279 540 RLVPELETTGTFKYRKVDLRKEGF 563 (600)
T ss_pred EeecCCCCCcchhhhHHHHhhcCC
Confidence 999999999999999999988754
>PLN03051 acyl-activating enzyme; Provisional
Back Show alignment and domain information
Probab=99.76 E-value=7.8e-18 Score=111.82 Aligned_cols=85 Identities=28% Similarity=0.310 Sum_probs=65.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHh-CCCcc----c-------------------ccCCCC-CCCHHHHHHHH----HhhC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLE-KKAKR----D-------------------QEKSKP-VLSLQELCTWA----KDKL 51 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~-~~~v~----~-------------------~~~~~~-~~~~~~l~~~~----~~~l 51 (87)
|+|||||++|+||+|.|||++|.+ ||.|. + ....+. ..+.+++.++| +++|
T Consensus 378 R~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l 457 (499)
T PLN03051 378 RADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNL 457 (499)
T ss_pred ccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhc
Confidence 899999999999999999999986 88551 0 001111 23456666665 4557
Q ss_pred CCCCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 52 APYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 52 ~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++..|..+.++++||+|++||++|+.|++.+.+
T Consensus 458 ~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 491 (499)
T PLN03051 458 NPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKK 491 (499)
T ss_pred CCccCCceEEEcCCCCCCCCccHHHHHHHHHHHH
Confidence 7767677899999999999999999999987754
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Back Show alignment and domain information
Probab=99.75 E-value=7.5e-18 Score=116.00 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=71.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc------------cCCCCCCCHHHHHHHHHhh-CCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ------------EKSKPVLSLQELCTWAKDK-LAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~------------~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~v 63 (87)
|+||+||++|+||+|.|||+++..|+.+. +. ...+...+.+++.++++++ ++.|++|..+.++
T Consensus 612 R~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v 691 (718)
T PRK08043 612 RAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSELTREKLQQYAREHGVPELAVPRDIRYL 691 (718)
T ss_pred cCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcccCHHHHHHHHHhcCCCcccCCceEEEe
Confidence 89999999999999999999999886331 00 0112335677899999987 9999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHh
Q 046846 64 DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++|+|++||++|+.|++.+.+
T Consensus 692 ~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 692 KQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred cccCcCCCCCcCHHHHHHHHhc
Confidence 9999999999999999988765
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase
Back Show alignment and domain information
Probab=99.75 E-value=9e-18 Score=113.88 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=71.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCC---CHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVL---SLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~---~~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|++|+|.|||++|.+||.|.. ....+... ..+++.+++++.|+.+++|.
T Consensus 496 R~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 575 (625)
T TIGR02188 496 RVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPD 575 (625)
T ss_pred cccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCc
Confidence 899999999999999999999999996511 01111111 23679999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.|.++++||+|++||++|+.|++.+.+
T Consensus 576 ~i~~v~~lP~t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 576 KIRFVPGLPKTRSGKIMRRLLRKIAAG 602 (625)
T ss_pred EEEECCCCCCCCCccchHHHHHHHHcC
Confidence 999999999999999999999998754
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
>PLN02574 4-coumarate--CoA ligase-like
Back Show alignment and domain information
Probab=99.75 E-value=1.3e-17 Score=111.91 Aligned_cols=86 Identities=24% Similarity=0.502 Sum_probs=73.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+||++|.+|+|.|||.+|..||.|.. ....+...+.+++.++++++|++|+.|..+.
T Consensus 451 R~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~ 530 (560)
T PLN02574 451 RLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVV 530 (560)
T ss_pred cchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEE
Confidence 889999999999999999999999996510 0111233467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHhc
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
+++++|+|++||++|+.|++.+.+.
T Consensus 531 ~v~~iP~t~~GKi~r~~L~~~~~~~ 555 (560)
T PLN02574 531 FVQSIPKSPAGKILRRELKRSLTNS 555 (560)
T ss_pred EeeccCCCCcchhhHHHHHHHHhhc
Confidence 9999999999999999999988653
>PRK00174 acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.75 E-value=1.1e-17 Score=113.71 Aligned_cols=85 Identities=25% Similarity=0.423 Sum_probs=70.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|++|+|.|||++|.+||.|.. ....+...+ .++|.+++++.|+.|+.|.
T Consensus 504 R~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 583 (637)
T PRK00174 504 RVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPD 583 (637)
T ss_pred ecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCC
Confidence 899999999999999999999999996610 001111122 4689999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.++++||+|++||++|+.|++.+.+
T Consensus 584 ~i~~v~~lP~t~~GKi~R~~L~~~~~~ 610 (637)
T PRK00174 584 VIQFAPGLPKTRSGKIMRRILRKIAEG 610 (637)
T ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 999999999999999999999988654
>PRK07529 AMP-binding domain protein; Validated
Back Show alignment and domain information
Probab=99.74 E-value=2.2e-17 Score=112.41 Aligned_cols=85 Identities=28% Similarity=0.423 Sum_probs=72.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCC-CCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLA-PYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~i 60 (87)
|.||+||++|+||+|.+||++|.+||.|.. ....+...+.+++.++++++++ .+++|..+
T Consensus 466 R~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i 545 (632)
T PRK07529 466 RAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHV 545 (632)
T ss_pred cccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEE
Confidence 899999999999999999999999996511 1122334567889999999986 57899999
Q ss_pred EEecccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.++++||+|++||++|+.|++.+..
T Consensus 546 ~~v~~lP~t~~GKi~r~~Lr~~~~~ 570 (632)
T PRK07529 546 RILDALPKTAVGKIFKPALRRDAIR 570 (632)
T ss_pred EEecCCCCCCCCcccHHHHHHHHHH
Confidence 9999999999999999999998754
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.74 E-value=1.9e-17 Score=112.38 Aligned_cols=85 Identities=20% Similarity=0.363 Sum_probs=70.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCC--------CCHHHHHHHHHhhCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPV--------LSLQELCTWAKDKLAP 53 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~--------~~~~~l~~~~~~~l~~ 53 (87)
|+||+||++|++|+|.|||++|.+||.|.. ....+.. ...++|..+++++|+.
T Consensus 494 R~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 573 (629)
T PRK10524 494 RTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGA 573 (629)
T ss_pred EecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCC
Confidence 789999999999999999999999996510 0011111 1245788999999999
Q ss_pred CCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 54 YKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 54 ~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|+.|..|.++++||+|++||++|+.|++.+.+
T Consensus 574 ~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 605 (629)
T PRK10524 574 VARPARVWFVSALPKTRSGKLLRRAIQAIAEG 605 (629)
T ss_pred CcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 99999999999999999999999999988653
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.73 E-value=3.5e-17 Score=109.82 Aligned_cols=85 Identities=24% Similarity=0.411 Sum_probs=72.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..|+.|.. ....+...+.+++..++++.++.|++|..+.
T Consensus 454 R~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~ 533 (562)
T PRK05677 454 RKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVE 533 (562)
T ss_pred cCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEE
Confidence 789999999999999999999999996510 0112234567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+..
T Consensus 534 ~v~~iP~t~sGKi~r~~L~~~~~~ 557 (562)
T PRK05677 534 FRDELPTTNVGKILRRELRDEELK 557 (562)
T ss_pred EeccCCCCCcccccHHHHHHHHHH
Confidence 999999999999999999987654
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.73 E-value=3.6e-17 Score=109.55 Aligned_cols=85 Identities=26% Similarity=0.347 Sum_probs=73.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|.+||.|.. ....+...+..++.++++++++.+++|..+.
T Consensus 421 R~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~ 500 (542)
T PRK06155 421 RIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVE 500 (542)
T ss_pred cCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCccCCcEEE
Confidence 889999999999999999999999996511 1122344567899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+..
T Consensus 501 ~~~~iP~t~~GKi~r~~l~~~~~~ 524 (542)
T PRK06155 501 FVAALPKTENGKVQKFVLREQGVT 524 (542)
T ss_pred EeccCCCCcccceeHHHHHhhccC
Confidence 999999999999999999987653
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.73 E-value=4.5e-17 Score=108.90 Aligned_cols=85 Identities=27% Similarity=0.488 Sum_probs=73.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||.++..+|.|.. ....+...+.+++.++++++++.|+.|..+.
T Consensus 430 R~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~ 509 (539)
T PRK07008 430 RSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVV 509 (539)
T ss_pred cccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHHHHHHHhhcccccCCeEEE
Confidence 789999999999999999999999996511 0112233567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|+.|++.+.+
T Consensus 510 ~v~~lP~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 510 FVDAIPHTATGKLQKLKLREQFRD 533 (539)
T ss_pred EecCCCCCCccceeHHHHHHHHHh
Confidence 999999999999999999998765
>PRK07868 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.73 E-value=2.7e-17 Score=116.67 Aligned_cols=81 Identities=9% Similarity=0.045 Sum_probs=69.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+||+||++|.+|+|.|||++|.+||.|.. ....+...+.++|.++|++ ++.|++|..|.+
T Consensus 857 R~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~ 935 (994)
T PRK07868 857 RRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHV 935 (994)
T ss_pred cCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEE
Confidence 899999999999999999999999996611 0112334567889999986 999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
+++||+|++||++|..|++.
T Consensus 936 v~~lP~T~sGKi~r~~L~~~ 955 (994)
T PRK07868 936 VPEIPLSATYRPTVSALRAA 955 (994)
T ss_pred eCCCCCCccccEehHHHHhc
Confidence 99999999999999999865
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Back Show alignment and domain information
Probab=99.72 E-value=1.4e-17 Score=111.05 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=68.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----cc---C-----------CCCCCCHHHHHHHHHhhCCCC--CCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----QE---K-----------SKPVLSLQELCTWAKDKLAPY--KLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~~---~-----------~~~~~~~~~l~~~~~~~l~~~--~~p~~i 60 (87)
|.||+||++|+||+|.|||++|.+||.|.. .. . .....+.+.+..+++++++.+ ++|..+
T Consensus 416 R~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~P~~~ 495 (525)
T PRK05851 416 RAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVASECGVVPSDV 495 (525)
T ss_pred ecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcchHHHHHHHHHHHHHHhCCCccEE
Confidence 889999999999999999999999996611 00 0 001234456777788877777 899999
Q ss_pred EEec--ccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWD--SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~--~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+++ +||+|++||++|+.|++.+.+
T Consensus 496 ~~v~~~~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 496 VFVAPGSLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred EEECCCCcCcCcchHHHHHHHHHHHHh
Confidence 9998 899999999999999998865
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Back Show alignment and domain information
Probab=99.72 E-value=2.9e-17 Score=110.05 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=70.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---------ccCCC----------CCCCHHHHHHHHHhh-CCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---------QEKSK----------PVLSLQELCTWAKDK-LAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---------~~~~~----------~~~~~~~l~~~~~~~-l~~~~~p~~i 60 (87)
|.||+||++|++|+|.|||++|.+||.|.. ....+ ...+.+++.+++.+. ++.|+.|..+
T Consensus 431 R~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~P~~i 510 (539)
T PRK06334 431 RLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTSISEVNDILKNSKTSSILKISYH 510 (539)
T ss_pred ccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCChHHHHHHHHhcCCcccccchhe
Confidence 889999999999999999999999986631 00011 123567888999886 7889999999
Q ss_pred EEecccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.++++||+|++||++|+.|++.+..
T Consensus 511 ~~v~~lP~t~~GKi~r~~L~~~~~~ 535 (539)
T PRK06334 511 HQVESIPMLGTGKPDYCSLNALAKS 535 (539)
T ss_pred eeecccccccCCcccHHHHHHHHHH
Confidence 9999999999999999999987653
>PRK06060 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.72 E-value=3.6e-17 Score=112.37 Aligned_cols=83 Identities=25% Similarity=0.476 Sum_probs=68.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+|+.|.. ....+...+ ..++..+++++|+.|++|.
T Consensus 386 R~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~ 465 (705)
T PRK06060 386 RADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPH 465 (705)
T ss_pred ccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCc
Confidence 889999999999999999999999986510 001111122 2478889999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHH
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQL 83 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~ 83 (87)
.+.++++||+|++||++|+.|++.+
T Consensus 466 ~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 466 RFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred EEEEeecCCCCcchhhHHHHHHhhc
Confidence 9999999999999999999998764
>PLN02246 4-coumarate--CoA ligase
Back Show alignment and domain information
Probab=99.72 E-value=4.6e-17 Score=108.67 Aligned_cols=85 Identities=24% Similarity=0.484 Sum_probs=72.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+.+|.+|+|.+||++|.+||.|.. . ...+...+.+++.++++++++.|+.|..+.
T Consensus 433 R~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~ 512 (537)
T PLN02246 433 RLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVF 512 (537)
T ss_pred cccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEE
Confidence 789999999999999999999999996511 0 111223456889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.+.+
T Consensus 513 ~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 513 FVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred EeccCCCCCcchhhHHHHHHHHhc
Confidence 999999999999999999998754
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.72 E-value=1.2e-17 Score=108.12 Aligned_cols=85 Identities=36% Similarity=0.564 Sum_probs=74.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc------------------cccCCCCCCCHHHHHHHHHhh-CCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR------------------DQEKSKPVLSLQELCTWAKDK-LAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~------------------~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~ 61 (87)
|.||+|+++|++|..+|||+.|..||.|. +....+......+++.++++. ++.|++|+.|.
T Consensus 435 R~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~GlAa~K~PDrie 514 (542)
T COG1021 435 RVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLAAFKLPDRIE 514 (542)
T ss_pred eehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcchhhhcCCccee
Confidence 78999999999999999999999999661 112344557888999999997 99999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||.|+-|||+++.|++.+..
T Consensus 515 ~v~~~P~T~VGKIdKk~Lr~~l~~ 538 (542)
T COG1021 515 FVDSLPLTAVGKIDKKALRRRLAS 538 (542)
T ss_pred ecccCCCcccccccHHHHHHHhhh
Confidence 999999999999999999987653
>PRK07867 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.72 E-value=5.5e-17 Score=108.47 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=71.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhh--CCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDK--LAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~--l~~~~~p~~ 59 (87)
|.||+|+++|++|+|.|||++|.+||.|. +....+...+.+++..++... |+.+++|..
T Consensus 402 R~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~ 481 (529)
T PRK07867 402 RLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSY 481 (529)
T ss_pred cccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhhccCCcccCCeE
Confidence 88999999999999999999999999651 111223346778899999875 999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+++++|+|++||++|+.|++....
T Consensus 482 i~~~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 482 VRVCAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred EEEeeccCCCCCcceeHHHHHHhcCC
Confidence 99999999999999999999987643
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.72 E-value=5.6e-17 Score=106.45 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=73.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---c--------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---Q--------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---~--------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|+||+||++|.+|+|.|||++|..+|.|.. . .......+.+++.++|++++++|+.|..+.++
T Consensus 352 R~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~ 431 (458)
T PRK09029 352 RLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLARFQQPVAYYLL 431 (458)
T ss_pred ccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcccCHHHHHHHHHhhchhccCCeEEEEe
Confidence 889999999999999999999999996511 0 00112356788999999999999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHh
Q 046846 64 DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++|+|++||++|+.|++++.+
T Consensus 432 ~~~p~t~~gKi~r~~L~~~~~~ 453 (458)
T PRK09029 432 PPELKNGGIKISRQALKEWVAQ 453 (458)
T ss_pred cccccCcCCCcCHHHHHHHHHh
Confidence 9999999999999999998865
>PRK07470 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.72 E-value=1e-16 Score=106.61 Aligned_cols=86 Identities=34% Similarity=0.619 Sum_probs=73.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----c---------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----D---------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~---------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|++|+|.+||.+|..++.+. + ....+...+.+.+.+++++.|+.|++|..+.
T Consensus 415 R~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~ 494 (528)
T PRK07470 415 RASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFF 494 (528)
T ss_pred CccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcEEE
Confidence 78999999999999999999999998541 0 0112223677889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHhc
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
+++++|+|++||++|+.|++.+.+.
T Consensus 495 ~~~~iP~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 495 FWDALPKSGYGKITKKMVREELEER 519 (528)
T ss_pred EeccCCCCCcccccHHHHHHHHHhc
Confidence 9999999999999999999988653
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.71 E-value=8e-17 Score=107.44 Aligned_cols=85 Identities=26% Similarity=0.484 Sum_probs=71.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCC--CCCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSK--PVLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~--~~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+||+|+++|.+|+|.|||++|.++|.|.. . ...+ ...+.+++.++++++|+.|++|..
T Consensus 437 R~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~ 516 (546)
T PRK08314 437 RLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRI 516 (546)
T ss_pred cchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcE
Confidence 789999999999999999999999986511 0 0011 123457899999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+++++|+|.+||++|+.|++...+
T Consensus 517 ~~~v~~iP~t~~GKv~r~~L~~~~~~ 542 (546)
T PRK08314 517 VEFVDSLPKSGSGKILWRQLQEQEKA 542 (546)
T ss_pred EEEecCCCCCCccceeHHHHHHHHhh
Confidence 99999999999999999999887654
>PRK09088 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.71 E-value=1.1e-16 Score=105.50 Aligned_cols=85 Identities=35% Similarity=0.519 Sum_probs=72.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..+|.|. +. ...+...+..++.++++++++.|++|..+.
T Consensus 382 R~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 461 (488)
T PRK09088 382 RKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLR 461 (488)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEE
Confidence 88999999999999999999999998651 10 011223467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++++.+
T Consensus 462 ~~~~iP~t~~gKi~r~~l~~~~~~ 485 (488)
T PRK09088 462 LVDALPRTASGKLQKARLRDALAA 485 (488)
T ss_pred EcccCCCCCCCceeHHHHHHHHHh
Confidence 999999999999999999998764
>PLN03052 acetate--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.71 E-value=6.9e-17 Score=111.77 Aligned_cols=85 Identities=32% Similarity=0.369 Sum_probs=66.9
Q ss_pred CccceEEeCCeeecHHHHHHHHH-hCCCcc----cc----------------cC--CCCCCCHHHHHH----HHHhhCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLL-EKKAKR----DQ----------------EK--SKPVLSLQELCT----WAKDKLAP 53 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~-~~~~v~----~~----------------~~--~~~~~~~~~l~~----~~~~~l~~ 53 (87)
|+||+||++|+||+|.|||++|. .||.|. +. .. .+...+.++|++ .+++++++
T Consensus 610 R~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~ 689 (728)
T PLN03052 610 RADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNP 689 (728)
T ss_pred cCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999995 788541 00 00 122234455554 46677889
Q ss_pred CCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 54 YKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 54 ~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+..|..|.++++||+|.|||++|+.|++.+..
T Consensus 690 ~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~ 721 (728)
T PLN03052 690 LFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQ 721 (728)
T ss_pred ccCCCEEEEcCCCCCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
>PLN03102 acyl-activating enzyme; Provisional
Back Show alignment and domain information
Probab=99.71 E-value=1.2e-16 Score=107.92 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=70.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCC----------CCHHHHHHHHHhhC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPV----------LSLQELCTWAKDKL 51 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~----------~~~~~l~~~~~~~l 51 (87)
|.||+|+++|.+|+|.|||++|.+||.|.. ....+.. .+..++.++++.+|
T Consensus 441 R~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L 520 (579)
T PLN03102 441 RSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENL 520 (579)
T ss_pred ccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhc
Confidence 889999999999999999999999985510 0011111 13567999999999
Q ss_pred CCCCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 52 APYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 52 ~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.|++|..+.+++++|+|++||++|+.|++++.+
T Consensus 521 ~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~ 554 (579)
T PLN03102 521 PHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKG 554 (579)
T ss_pred ccccCCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence 9999999999999999999999999999998754
>PRK04319 acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.71 E-value=1.1e-16 Score=107.56 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=69.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc-------------------cCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ-------------------EKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~-------------------~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+|+++|++|+|.|||++|.+||.|... ...+...+ .+++..+++++|+.|+.|.
T Consensus 453 R~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 532 (570)
T PRK04319 453 RVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPR 532 (570)
T ss_pred cCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCc
Confidence 8899999999999999999999999965110 01111111 3578999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHH
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
.+.++++||+|++||++|+.|+++..
T Consensus 533 ~i~~v~~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 533 EIEFKDKLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred EEEEeCCCCCCCchhhhHHHHHHHHh
Confidence 99999999999999999999998764
>PRK05852 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.70 E-value=8.4e-17 Score=107.34 Aligned_cols=85 Identities=20% Similarity=0.420 Sum_probs=73.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||.+|..+|.|.. ........+.+++..+++++|+.|++|..+.
T Consensus 429 R~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~ 508 (534)
T PRK05852 429 RIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQ 508 (534)
T ss_pred cchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEE
Confidence 789999999999999999999999996511 0112223567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.|..
T Consensus 509 ~v~~iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 509 EASGLPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred EhhhcCCCCCccccHHHHHHHhcc
Confidence 999999999999999999998854
>PLN02860 o-succinylbenzoate-CoA ligase
Back Show alignment and domain information
Probab=99.70 E-value=1.3e-16 Score=107.15 Aligned_cols=85 Identities=24% Similarity=0.470 Sum_probs=69.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCC--------------CCCCHHHHHHHH
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSK--------------PVLSLQELCTWA 47 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~--------------~~~~~~~l~~~~ 47 (87)
|+||+||++|++|+|.|||+++..||.|.. ....+ ...+.+.+..++
T Consensus 435 R~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 514 (563)
T PLN02860 435 RSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHC 514 (563)
T ss_pred cccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHH
Confidence 789999999999999999999999996510 00111 134567889999
Q ss_pred Hh-hCCCCCCCceEEEe-cccCCCCCCcccHHHHHHHHHh
Q 046846 48 KD-KLAPYKLPTRLFLW-DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 48 ~~-~l~~~~~p~~i~~v-~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+ .|++|++|..+.++ ++||+|++||++|+.|++++.+
T Consensus 515 ~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~ 554 (563)
T PLN02860 515 REKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLS 554 (563)
T ss_pred hhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHH
Confidence 87 59999999998775 6799999999999999998754
>PRK13388 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.70 E-value=1.4e-16 Score=106.74 Aligned_cols=85 Identities=29% Similarity=0.332 Sum_probs=70.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhh--CCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDK--LAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~--l~~~~~p~~ 59 (87)
|+||+||++|++|+|.+||++|.+||.|.. ....+...+.+++.++++.+ |+.++.|..
T Consensus 401 R~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~ 480 (540)
T PRK13388 401 RTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRY 480 (540)
T ss_pred cCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcE
Confidence 789999999999999999999999996511 01122235567888888764 999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.++++||+|++||++|+.|++....
T Consensus 481 ~~~v~~iP~t~~GKv~R~~L~~~~~~ 506 (540)
T PRK13388 481 VRIAADLPSTATNKVLKRELIAQGWA 506 (540)
T ss_pred EEEeccCCCCCcceeeHHhHHHhccC
Confidence 99999999999999999999987643
>PRK06839 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.70 E-value=2.1e-16 Score=104.12 Aligned_cols=85 Identities=31% Similarity=0.465 Sum_probs=72.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..+|.+. +....+...+.+++..+++..|+.+++|..+.
T Consensus 392 R~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 471 (496)
T PRK06839 392 RKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIV 471 (496)
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCcEEE
Confidence 78999999999999999999999999651 11112234566889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|..|+++..+
T Consensus 472 ~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 472 FLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred EeccCCCCccccccHHHHHHHhhc
Confidence 999999999999999999987653
>PRK07638 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.70 E-value=1.3e-16 Score=105.27 Aligned_cols=86 Identities=27% Similarity=0.417 Sum_probs=73.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc----cCC-----------CCCCCHHHHHHHHHhhCCCCCCCceEEEecc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ----EKS-----------KPVLSLQELCTWAKDKLAPYKLPTRLFLWDS 65 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~----~~~-----------~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~ 65 (87)
|+||+|+++|.+|+|.+||+++.++|.|... ... ....+.+++.+++++.++.|++|..+.++++
T Consensus 382 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~ 461 (487)
T PRK07638 382 REKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQRLSSFKIPKEWHFVDE 461 (487)
T ss_pred cCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCCHHHHHHHHHHHhhcccCCcEEEEecc
Confidence 8899999999999999999999999976111 000 0135677899999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHhc
Q 046846 66 LPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 66 ~p~t~~gKi~r~~l~~~~~~~ 86 (87)
+|+|++||++|+.|++.+...
T Consensus 462 iP~t~~GKv~r~~L~~~~~~~ 482 (487)
T PRK07638 462 IPYTNSGKIARMEAKSWIENQ 482 (487)
T ss_pred cCCCCcccccHHHHHHHHhcc
Confidence 999999999999999988653
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.70 E-value=9.4e-17 Score=108.05 Aligned_cols=86 Identities=20% Similarity=0.358 Sum_probs=72.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCC---CCCCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSK---PVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~---~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+|+++|.+|+|.+||++|.+||.|.. ....+ ...+.+++..+++++|+.|++|.
T Consensus 451 R~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~ 530 (576)
T PRK05620 451 RARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPE 530 (576)
T ss_pred chhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCe
Confidence 789999999999999999999999996510 00111 12346789999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHhc
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.+.+++++|+|.+||++|+.|++.+..+
T Consensus 531 ~i~~v~~~P~t~~GKv~r~~L~~~~~~~ 558 (576)
T PRK05620 531 YWTFVDEIDKTSVGKFDKKDLRQHLADG 558 (576)
T ss_pred EEEEeccCCCCCcccCcHHHHHHHHhcC
Confidence 9999999999999999999999998753
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.70 E-value=1.8e-16 Score=106.31 Aligned_cols=85 Identities=27% Similarity=0.434 Sum_probs=72.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|.++|.+.. ....+...+.+++..+++++++.++.|..+.
T Consensus 452 R~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 531 (563)
T PRK06710 452 RKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYE 531 (563)
T ss_pred ccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEE
Confidence 789999999999999999999999986510 1112234567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+..
T Consensus 532 ~v~~iP~t~~GKi~r~~L~~~~~~ 555 (563)
T PRK06710 532 FRDELPKTTVGKILRRVLIEEEKR 555 (563)
T ss_pred EcccCCCCccchhhHHHHHHHHhh
Confidence 999999999999999999998764
>PRK06145 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.70 E-value=1.7e-16 Score=104.80 Aligned_cols=84 Identities=31% Similarity=0.522 Sum_probs=71.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+|+++|.+|+|.+||++|..+|.|.. . .......+.+++.++++++|++|+.|..+.
T Consensus 394 R~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 473 (497)
T PRK06145 394 RKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLK 473 (497)
T ss_pred cccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCCEEE
Confidence 889999999999999999999999986511 0 012233467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
+++++|+|++||++|+.|++.+.
T Consensus 474 ~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 474 VRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred EeccCCCCCcccccHHHHHHHhc
Confidence 99999999999999999998764
>PRK06018 putative acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.70 E-value=2.1e-16 Score=105.64 Aligned_cols=85 Identities=25% Similarity=0.447 Sum_probs=73.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||..+.+||.|.. ....+...+.+.+.+++..+++.|+.|..+.
T Consensus 431 R~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~ 510 (542)
T PRK06018 431 RSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVA 510 (542)
T ss_pred cCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEE
Confidence 789999999999999999999999996511 1122334567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+.+
T Consensus 511 ~v~~iP~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 511 FVDAIPHTATGKILKTALREQFKD 534 (542)
T ss_pred EeccCCCCCcchhhHHHHHHHHhc
Confidence 999999999999999999998865
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.70 E-value=2.1e-16 Score=106.18 Aligned_cols=85 Identities=27% Similarity=0.548 Sum_probs=73.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+++..|+.+. +....+...+.+++.++++++|+.+++|..+.
T Consensus 466 R~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 545 (573)
T PRK05605 466 RIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFY 545 (573)
T ss_pred ccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEE
Confidence 88999999999999999999999998551 11122334567899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|..|++.+.+
T Consensus 546 ~~~~iP~t~~GKi~r~~L~~~~~~ 569 (573)
T PRK05605 546 HVDELPRDQLGKVRRREVREELLE 569 (573)
T ss_pred EeccCCCCCcccccHHHHHHHHHH
Confidence 999999999999999999998754
>PRK08308 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.69 E-value=1.5e-16 Score=103.47 Aligned_cols=79 Identities=29% Similarity=0.523 Sum_probs=67.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc-----------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ-----------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~-----------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|.||+||++|++|+|.|||+++..+|.+... .......+.+++.++++++++.|++|..+.++
T Consensus 312 R~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v 391 (414)
T PRK08308 312 RMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEIDPVQLREWCIQHLAPYQVPHEIESV 391 (414)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCHHHHHHHHHHhCccccCCcEEEEe
Confidence 8899999999999999999999999865110 01123456788999999999999999999999
Q ss_pred cccCCCCCCcccHHHH
Q 046846 64 DSLPRNAMGKVNKKEL 79 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l 79 (87)
+++|+|++||++|+.|
T Consensus 392 ~~iP~t~~GKi~r~~~ 407 (414)
T PRK08308 392 TEIPKNANGKVSRKLL 407 (414)
T ss_pred ccCCCCCCcCeehhhh
Confidence 9999999999999954
>PRK07798 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.69 E-value=1.5e-16 Score=105.37 Aligned_cols=85 Identities=27% Similarity=0.368 Sum_probs=72.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+++.++|.|.. ....+...+.+++.+++++.|+.|++|..+.
T Consensus 429 R~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~ 508 (533)
T PRK07798 429 RGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIW 508 (533)
T ss_pred cccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEE
Confidence 789999999999999999999999986511 0112234577899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++...+
T Consensus 509 ~~~~iP~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 509 FVDEVQRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred EcccCCCCCcchhhHHHHhhhhcc
Confidence 999999999999999999998654
>PRK13382 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.69 E-value=1.5e-16 Score=106.46 Aligned_cols=81 Identities=27% Similarity=0.475 Sum_probs=69.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+||++|++|+|.+||.+|..||.|.. ....+...+.+++.+++++.|+.|+.|..+.
T Consensus 437 R~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~ 516 (537)
T PRK13382 437 RDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIV 516 (537)
T ss_pred cccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHhccCCCCCcEEE
Confidence 889999999999999999999999996510 0112223566889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~ 81 (87)
+++++|+|++||++|+.|++
T Consensus 517 ~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 517 VLDELPRGATGKILRRELQA 536 (537)
T ss_pred EeccCCCCCCCCCcHHhhCC
Confidence 99999999999999998864
>PRK12583 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.69 E-value=3.9e-16 Score=104.30 Aligned_cols=85 Identities=27% Similarity=0.389 Sum_probs=72.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+|+++|.+|+|.+||++|..++.+.. ....+...+..++..+++++|+.++.|..+.
T Consensus 449 R~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~ 528 (558)
T PRK12583 449 RSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFR 528 (558)
T ss_pred cccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEE
Confidence 789999999999999999999999986511 0111223567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++++..
T Consensus 529 ~v~~lP~t~sGK~~r~~L~~~~~~ 552 (558)
T PRK12583 529 FVDEFPMTVTGKVQKFRMREISIE 552 (558)
T ss_pred EeccCCCCCCCCccHHHHHHHHHh
Confidence 999999999999999999998754
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Back Show alignment and domain information
Probab=99.68 E-value=4.7e-16 Score=104.12 Aligned_cols=86 Identities=30% Similarity=0.512 Sum_probs=72.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHh-hCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKD-KLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i 60 (87)
|.||+|+++|++|+|.+||++|..++.+.. ....+...+.+++.+++.+ .++.|++|..+
T Consensus 440 R~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i 519 (547)
T PRK13295 440 RSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERL 519 (547)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEE
Confidence 789999999999999999999999985510 0111233456789999986 69999999999
Q ss_pred EEecccCCCCCCcccHHHHHHHHHhc
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.+++++|+|.+||++|..|++.+.+.
T Consensus 520 ~~v~~lP~t~sgK~~r~~L~~~~~~~ 545 (547)
T PRK13295 520 VVRDALPRTPSGKIQKFRLREMLRGE 545 (547)
T ss_pred EEeccCCCCCCccccHHHHHHHHhcC
Confidence 99999999999999999999988654
>PRK07514 malonyl-CoA synthase; Validated
Back Show alignment and domain information
Probab=99.68 E-value=4.9e-16 Score=102.69 Aligned_cols=85 Identities=34% Similarity=0.514 Sum_probs=72.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+|+++|.+|+|.+||+++..++.|.. . ...+...+..++.++++++++.++.|..+.
T Consensus 398 R~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 477 (504)
T PRK07514 398 RGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVF 477 (504)
T ss_pred cccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhhcccCCCCcEEE
Confidence 789999999999999999999999986511 0 011223467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.+.+
T Consensus 478 ~v~~~p~t~~gK~~r~~l~~~~~~ 501 (504)
T PRK07514 478 FVDELPRNTMGKVQKNLLREQYAD 501 (504)
T ss_pred EeccCCCCCCcceeHHHHHHHHHh
Confidence 999999999999999999998764
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Back Show alignment and domain information
Probab=99.68 E-value=3.9e-16 Score=111.44 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=71.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc------------cCCCCCCCHHHHHHHHHhh-CCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ------------EKSKPVLSLQELCTWAKDK-LAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~------------~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~v 63 (87)
|.||+||++|++|+|.|||+++.+|+.+. +. ...+...+.+++.+++.+. ++.|++|..+.++
T Consensus 1031 R~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v 1110 (1140)
T PRK06814 1031 RAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDATRAAFLAHAKAAGASELMVPAEIITI 1110 (1140)
T ss_pred cccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCcCHHHHHHHHHHcCCCcccCCcEEEEe
Confidence 88999999999999999999999997441 00 0112345677889999875 9999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHh
Q 046846 64 DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++|+|++||++|+.|++.+.+
T Consensus 1111 ~~lP~t~~GKi~r~~L~~~~~~ 1132 (1140)
T PRK06814 1111 DEIPLLGTGKIDYVAVTKLAEE 1132 (1140)
T ss_pred cCcCCCCCCCCcHHHHHHHHHH
Confidence 9999999999999999998764
>PRK06188 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.68 E-value=4.6e-16 Score=103.48 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=72.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..++.+.. ....+.....+++..++.+.++.++.|..+.
T Consensus 414 R~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 493 (524)
T PRK06188 414 RKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVD 493 (524)
T ss_pred ccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEE
Confidence 789999999999999999999999986511 0112233456789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.|.+
T Consensus 494 ~v~~~P~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 494 FVDSLPLTALGKPDKKALRARYWE 517 (524)
T ss_pred EecCCCCCccccccHHHHHHHHHh
Confidence 999999999999999999999854
>PRK08316 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.68 E-value=6.4e-16 Score=102.34 Aligned_cols=85 Identities=32% Similarity=0.559 Sum_probs=72.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+.|.+++.+.. ....+...+.+.+.++++.+++.++.|..+.
T Consensus 416 R~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 495 (523)
T PRK08316 416 RKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVI 495 (523)
T ss_pred ccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEE
Confidence 889999999999999999999999985510 0111223567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.|.+
T Consensus 496 ~v~~~p~t~~gKi~r~~l~~~~~~ 519 (523)
T PRK08316 496 FVDELPRNPSGKILKRELRERYAG 519 (523)
T ss_pred EecCCCCCCccceeHHHHHHHHHh
Confidence 999999999999999999999875
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.67 E-value=7.7e-16 Score=102.97 Aligned_cols=85 Identities=34% Similarity=0.551 Sum_probs=72.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccC-CCCCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEK-SKPVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~-~~~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|.||+|+++|.+|+|.+||++|.++|.+.. ... .......+++..+++++++.|+.|..+
T Consensus 420 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i 499 (542)
T PRK07786 420 RKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKAL 499 (542)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCEE
Confidence 789999999999999999999999985510 001 112356688999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+++++|+|++||++|..|++.+..
T Consensus 500 ~~v~~iP~t~~GKv~r~~L~~~~~~ 524 (542)
T PRK07786 500 EIVDALPRNPAGKVLKTELRERYGA 524 (542)
T ss_pred EEeccCCCCCcccccHHHHHHHHHh
Confidence 9999999999999999999999875
>PRK13390 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.67 E-value=2.5e-16 Score=104.23 Aligned_cols=80 Identities=28% Similarity=0.358 Sum_probs=65.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCC---CCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPV---LSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~---~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+|+++|++|+|.+||++|..||.|.. ....+.. ...+++.++++.+|+.|+.|.
T Consensus 400 R~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 479 (501)
T PRK13390 400 RKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPR 479 (501)
T ss_pred ccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCc
Confidence 789999999999999999999999986510 0011111 124578899999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHH
Q 046846 59 RLFLWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~ 80 (87)
.+.+++++|+|++||++|+.|+
T Consensus 480 ~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 480 SVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred EEEEeccCCCCCccceehhhcC
Confidence 9999999999999999999873
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated
Back Show alignment and domain information
Probab=99.67 E-value=3.7e-16 Score=103.39 Aligned_cols=81 Identities=26% Similarity=0.435 Sum_probs=69.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+++..+|.|. +....+...+...+.+++++++++++.|..+.
T Consensus 415 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~ 494 (515)
T TIGR03098 415 RRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIH 494 (515)
T ss_pred ccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCCEEE
Confidence 78999999999999999999999998651 00112334567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~ 81 (87)
++++||+|.+||++|+.|++
T Consensus 495 ~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 495 VRQALPRNANGKIDRKALAA 514 (515)
T ss_pred EeccCCCCCCCCCcHHHhcc
Confidence 99999999999999999864
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.67 E-value=7e-16 Score=101.51 Aligned_cols=85 Identities=33% Similarity=0.544 Sum_probs=73.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|+||++|.+|.+|+|.+||.++..++.+.. . ...+...+.+++.+++++.|+.|++|..+.++
T Consensus 381 R~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~ 460 (483)
T PRK03640 381 RRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFCEEKLAKYKVPKRFYFV 460 (483)
T ss_pred cccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCCCHHHHHHHHHHhccCCCCCcEEEEe
Confidence 789999999999999999999999986511 0 11233466788999999999999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHh
Q 046846 64 DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++|+|++||++|..|++.+.+
T Consensus 461 ~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 461 EELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred CCCCCCCccceeHHHHHHHHhh
Confidence 9999999999999999998764
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.67 E-value=9.3e-16 Score=101.73 Aligned_cols=85 Identities=28% Similarity=0.442 Sum_probs=72.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+||++|.+|+|.+||+.|..++.+.. ........+.+++..++++.++.|+.|..+.
T Consensus 400 R~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~ 479 (509)
T PRK12406 400 RKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIE 479 (509)
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEE
Confidence 789999999999999999999999986511 0111223467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.+..
T Consensus 480 ~~~~iP~t~~GK~~r~~L~~~~~~ 503 (509)
T PRK12406 480 IMAELPREDSGKIFKRRLRDPYWA 503 (509)
T ss_pred EeccCCCCCccchhHHHHHHHHHh
Confidence 999999999999999999988754
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1
Back Show alignment and domain information
Probab=99.67 E-value=4.3e-16 Score=102.89 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=69.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc-c-C--------------CCC---C-CCHHHHHHHHHhhCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ-E-K--------------SKP---V-LSLQELCTWAKDKLAPYKL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~-~-~--------------~~~---~-~~~~~l~~~~~~~l~~~~~ 56 (87)
|.||+|+++|.+|+|.+||+++.++|.|. +. . . ... . ....++...++++++.++.
T Consensus 394 R~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 473 (502)
T TIGR01734 394 RLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMI 473 (502)
T ss_pred cccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcC
Confidence 78999999999999999999999999651 11 0 0 000 0 1126788999999999999
Q ss_pred CceEEEecccCCCCCCcccHHHHHHHHH
Q 046846 57 PTRLFLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 57 p~~i~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
|..+.+++++|+|++||++|+.|++.+.
T Consensus 474 P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 474 PRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred CcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 9999999999999999999999999764
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family
Back Show alignment and domain information
Probab=99.66 E-value=5.9e-16 Score=100.82 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=61.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc--------------ccCCCCCC--CHHHHHHHHHhhCCCCCCCceEEEec
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD--------------QEKSKPVL--SLQELCTWAKDKLAPYKLPTRLFLWD 64 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~--------------~~~~~~~~--~~~~l~~~~~~~l~~~~~p~~i~~v~ 64 (87)
|+||+|+++|+||+|.+||++|.+||.|.. ....+... ..+++.+++.++++.|+.|..+.+++
T Consensus 296 R~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~~g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~ 375 (386)
T TIGR02372 296 RKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRLDGRRLKAFIVVAEDADEAELEIELRATAARHLPAPARPDRFRFGT 375 (386)
T ss_pred ccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEcCCceEEEEEEECCCCChHHHHHHHHHHHHHhCCCCCCCcEEEEcc
Confidence 899999999999999999999999996511 11111111 14578899999999999999999999
Q ss_pred ccCCCCCCccc
Q 046846 65 SLPRNAMGKVN 75 (87)
Q Consensus 65 ~~p~t~~gKi~ 75 (87)
++|+|++||++
T Consensus 376 ~lP~t~~GKi~ 386 (386)
T TIGR02372 376 ELPRTGAGKLA 386 (386)
T ss_pred cCCCCCCCCcC
Confidence 99999999985
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
>PLN02330 4-coumarate--CoA ligase-like 1
Back Show alignment and domain information
Probab=99.66 E-value=4.7e-16 Score=104.06 Aligned_cols=85 Identities=22% Similarity=0.410 Sum_probs=72.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|++|+|.+||.+|.+++.|.. ....+...+.+++.++++..++.|+.|..+.
T Consensus 438 R~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~ 517 (546)
T PLN02330 438 RIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQ 517 (546)
T ss_pred chHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCceEEE
Confidence 789999999999999999999999986510 0111223556789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|+.|++.+..
T Consensus 518 ~v~~iP~t~~GK~~r~~L~~~~~~ 541 (546)
T PLN02330 518 FVDSIPKSLSGKIMRRLLKEKMLS 541 (546)
T ss_pred EeccCCCCCCcceeHHHHHHHHHh
Confidence 999999999999999999998864
>PRK08315 AMP-binding domain protein; Validated
Back Show alignment and domain information
Probab=99.66 E-value=1.2e-15 Score=102.12 Aligned_cols=85 Identities=22% Similarity=0.411 Sum_probs=72.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..++.+.. ....+...+.+.+..++++.++.|++|..+.
T Consensus 448 R~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~ 527 (559)
T PRK08315 448 RIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIR 527 (559)
T ss_pred eccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEE
Confidence 789999999999999999999999986510 0111223467789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|..|++.+..
T Consensus 528 ~v~~lP~t~~GK~~r~~L~~~~~~ 551 (559)
T PRK08315 528 FVDEFPMTVTGKIQKFKMREMMIE 551 (559)
T ss_pred EcccCCCCCCCceeHHHHHHHHHh
Confidence 999999999999999999988754
>PRK06178 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.66 E-value=1e-15 Score=102.74 Aligned_cols=84 Identities=30% Similarity=0.488 Sum_probs=71.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+|+++|.+|+|.+||+++..++.|.. ....+...+.+++.++++++++.|++|. +.
T Consensus 463 R~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~ 541 (567)
T PRK06178 463 RRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IR 541 (567)
T ss_pred cccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EE
Confidence 789999999999999999999999986510 0111223467889999999999999996 88
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+.+
T Consensus 542 ~v~~iP~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 542 IVDALPMTATGKVRKQDLQALAEE 565 (567)
T ss_pred EeccCCCCCccceeHHHHHHHHHh
Confidence 899999999999999999998865
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.66 E-value=1.4e-15 Score=100.48 Aligned_cols=87 Identities=31% Similarity=0.477 Sum_probs=74.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----c---------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----D---------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~---------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+.|..++.+. + ....+...+..++.+++++.++.+..|..+.
T Consensus 416 R~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~ 495 (521)
T PRK06187 416 RIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIA 495 (521)
T ss_pred cccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEEE
Confidence 78999999999999999999999998651 1 0012233567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHhcC
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAAQQ 87 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~~~ 87 (87)
+++++|+|++||++|..+++.|.+.|
T Consensus 496 ~v~~~P~t~~gK~~r~~l~~~~~~~~ 521 (521)
T PRK06187 496 FVDELPRTSVGKILKRVLREQYAEGK 521 (521)
T ss_pred EccCCCCCCCCCeeHHHHHHHHhcCC
Confidence 99999999999999999999998764
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.66 E-value=7.9e-16 Score=103.37 Aligned_cols=82 Identities=30% Similarity=0.571 Sum_probs=70.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c--------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q--------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~--------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||..|.+||.|.. . .......+.+++..++.++++.|++|..+.+
T Consensus 462 R~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~ 541 (562)
T PRK12492 462 RKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKAYCKENFTGYKVPKHIVL 541 (562)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHHhcccccCCcEEEE
Confidence 789999999999999999999999986510 0 0112235678899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
++++|+|++||++|+.|+++
T Consensus 542 ~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 542 RDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred eccCCCCCCCceeHHHHHhh
Confidence 99999999999999999875
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Back Show alignment and domain information
Probab=99.65 E-value=5.7e-16 Score=102.83 Aligned_cols=80 Identities=30% Similarity=0.526 Sum_probs=67.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+++..|+.|.. ....+...+.+++..+++++++.|++|..+.
T Consensus 419 R~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 498 (517)
T PRK08008 419 RRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLE 498 (517)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEE
Confidence 789999999999999999999999985510 1112233456789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~ 80 (87)
+++++|+|++||++|+.|+
T Consensus 499 ~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 499 IRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred EeccCCCCCccceehhhcC
Confidence 9999999999999998763
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase
Back Show alignment and domain information
Probab=99.65 E-value=4.8e-16 Score=112.64 Aligned_cols=81 Identities=27% Similarity=0.425 Sum_probs=66.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c--------------cCC-C-CC-----------------------
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q--------------EKS-K-PV----------------------- 37 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~--------------~~~-~-~~----------------------- 37 (87)
|.||+||++|+||+|.|||.+|.+||.|.. . ... . ..
T Consensus 699 R~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1389)
T TIGR03443 699 RADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIK 778 (1389)
T ss_pred ccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhh
Confidence 899999999999999999999999996510 0 000 0 00
Q ss_pred --CCHHHHHHHHHhhCCCCCCCceEEEecccCCCCCCcccHHHHHH
Q 046846 38 --LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 38 --~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~ 81 (87)
...+++.++++++|+.|++|..+.++++||+|++||++|+.|..
T Consensus 779 ~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 779 YRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred hhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 01457889999999999999999999999999999999999853
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.65 E-value=7.2e-16 Score=103.31 Aligned_cols=82 Identities=26% Similarity=0.466 Sum_probs=70.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||++|..++.|.. ....+...+.+++.+++.+.++.|+.|..+.+
T Consensus 458 R~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~P~~v~~ 537 (560)
T PRK08751 458 RKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKAHARANLTGYKQPRIIEF 537 (560)
T ss_pred echhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCCCHHHHHHHHHHhhhhccCCeEEEE
Confidence 789999999999999999999999986510 01122345677899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
++++|+|.+||++|+.|++.
T Consensus 538 v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 538 RKELPKTNVGKILRRELRDA 557 (560)
T ss_pred hhhCCCCccccccHHHHHHh
Confidence 99999999999999999876
>PRK06164 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.65 E-value=1.7e-15 Score=101.02 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=72.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||++|..++.|.. ....+...+.+++.++|++++++|++|..+.+
T Consensus 427 R~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 506 (540)
T PRK06164 427 RMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQV 506 (540)
T ss_pred ecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEE
Confidence 789999999999999999999999986511 00122235678899999999999999999999
Q ss_pred ecccCCCCCC---cccHHHHHHHHHh
Q 046846 63 WDSLPRNAMG---KVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~g---Ki~r~~l~~~~~~ 85 (87)
++++|+|.+| |++|+.|++.+.+
T Consensus 507 ~~~~P~t~~g~~~Ki~r~~L~~~~~~ 532 (540)
T PRK06164 507 VEAFPVTESANGAKIQKHRLREMAQA 532 (540)
T ss_pred ecCCCCCCCCccccccHHHHHHHHHH
Confidence 9999999999 9999999998764
>PRK09274 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.65 E-value=6e-16 Score=103.55 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=65.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCC---CCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPY---KLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~---~~p~~ 59 (87)
|.||+|+++|.+|+|.|||++|.+||.|.. ....+...+.+++.+++++.++.+ +.|..
T Consensus 441 R~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 520 (552)
T PRK09274 441 RKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIER 520 (552)
T ss_pred ccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeE
Confidence 789999999999999999999999996510 011122233445666666655554 47789
Q ss_pred EEEecccCCC--CCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRN--AMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t--~~gKi~r~~l~~~~~~ 85 (87)
+.++++||+| ++||++|+.|++++..
T Consensus 521 ~~~~~~lP~t~~~~GKi~r~~L~~~~~~ 548 (552)
T PRK09274 521 FLIHPSFPVDIRHNAKIFREKLAVWAAK 548 (552)
T ss_pred EeccCCCCccccccccccHHHHHHHHHH
Confidence 9999999999 7999999999998765
>PRK05857 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.65 E-value=9.6e-16 Score=102.62 Aligned_cols=85 Identities=18% Similarity=0.323 Sum_probs=66.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cccC-------------CCCCCC---H----HHHHHHHHhhCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQEK-------------SKPVLS---L----QELCTWAKDKLAPYKL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~~~-------------~~~~~~---~----~~l~~~~~~~l~~~~~ 56 (87)
|.||+||++|.+|+|.|||.+|..||.|. +... .....+ . +.+..++++.++.|++
T Consensus 423 R~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 502 (540)
T PRK05857 423 RSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMAR 502 (540)
T ss_pred cccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccC
Confidence 78999999999999999999999999651 1000 001111 1 2344556677999999
Q ss_pred CceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 57 PTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 57 p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|..+.+++++|+|++||++|+.|++.+.+
T Consensus 503 P~~v~~~~~iP~t~~GKi~r~~l~~~~~~ 531 (540)
T PRK05857 503 PSTIVIVTDIPRTQSGKVMRASLAAAATA 531 (540)
T ss_pred CeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence 99999999999999999999999998875
>PRK12316 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.65 E-value=5.1e-16 Score=121.37 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=70.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc---------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEEEecc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR---------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDS 65 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~---------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~ 65 (87)
|+||+||++|++|+|.|||++|.+||.|. +....+.....+.+.++++++|+.|++|..+.++++
T Consensus 907 R~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~~i~~v~~ 986 (5163)
T PRK12316 907 RIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALER 986 (5163)
T ss_pred ccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcCCCeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCCeEEEHhh
Confidence 89999999999999999999999999661 111122245578899999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHH
Q 046846 66 LPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 66 ~p~t~~gKi~r~~l~~~ 82 (87)
||+|++||++|+.|.+.
T Consensus 987 lP~t~~GKidr~~L~~~ 1003 (5163)
T PRK12316 987 LPLTPNGKLDRKALPAP 1003 (5163)
T ss_pred CCCCCCCChhHHhhcCc
Confidence 99999999999999764
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.65 E-value=6.5e-16 Score=105.05 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=68.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHh-CCCccc-----c-c----------------------------------CCC-CCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLE-KKAKRD-----Q-E----------------------------------KSK-PVL 38 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~-~~~v~~-----~-~----------------------------------~~~-~~~ 38 (87)
|.||+||++|+||+|.|||++|.+ ||.|.. . . ..+ ...
T Consensus 484 R~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~ 563 (631)
T PRK07769 484 RVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKL 563 (631)
T ss_pred ccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccc
Confidence 899999999999999999999986 775421 0 0 011 134
Q ss_pred CHHHHHHHHHhhCCC-CC-CCceEEEec--ccCCCCCCcccHHHHHHHHHh
Q 046846 39 SLQELCTWAKDKLAP-YK-LPTRLFLWD--SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 39 ~~~~l~~~~~~~l~~-~~-~p~~i~~v~--~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.++|.++++++++. ++ .|..+.+++ +||+|++||++|+.|++.+..
T Consensus 564 ~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 564 DPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD 614 (631)
T ss_pred cHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence 567899999999995 66 588999997 799999999999999998764
>PRK12467 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.64 E-value=4.7e-16 Score=120.11 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=69.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+||+||++|+||+|.|||++|.++|+|.. . .........+.++++++.+|+.|++|..+.+
T Consensus 3492 R~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~ 3571 (3956)
T PRK12467 3492 RIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLV 3571 (3956)
T ss_pred cccceEeeceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCcccHHHHHHHHhccCChhhCCCeeee
Confidence 899999999999999999999999997610 0 0111234567899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
+++||+|++||++|+.|.+.
T Consensus 3572 l~~lP~t~~GKidR~~L~~~ 3591 (3956)
T PRK12467 3572 LAAMPLGPNGKVDRKALPDP 3591 (3956)
T ss_pred eccCCCCCCCccchhhcCCC
Confidence 99999999999999998764
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase
Back Show alignment and domain information
Probab=99.64 E-value=8.8e-16 Score=102.34 Aligned_cols=80 Identities=40% Similarity=0.621 Sum_probs=67.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhh-CCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDK-LAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..||.|.. ....+...+..++.++++++ ++.|+.|..+.
T Consensus 429 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~l~~~~l~~~~~P~~i~ 508 (527)
T TIGR02275 429 RAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLAEYKLPDRVE 508 (527)
T ss_pred cccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCCHHHHHHHHHhCCCccccCCCEEE
Confidence 789999999999999999999999996510 01122235678899999986 99999999999
Q ss_pred EecccCCCCCCcccHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~ 80 (87)
+++++|+|++||++|+.|+
T Consensus 509 ~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 509 FIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred EeccCCCCCccceeHHhcC
Confidence 9999999999999999763
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.64 E-value=1.7e-15 Score=100.18 Aligned_cols=81 Identities=36% Similarity=0.598 Sum_probs=69.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..++++.. ....+...+.+++.++++..|+.++.|..+.
T Consensus 413 R~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 492 (513)
T PRK07656 413 RKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIE 492 (513)
T ss_pred cccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCCEEE
Confidence 789999999999999999999999986511 0011234567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~ 81 (87)
+++++|+|++||++|..|++
T Consensus 493 ~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 493 FLDELPKNATGKVLKRALRE 512 (513)
T ss_pred EecCCCCCCccceeHHHHhc
Confidence 99999999999999999875
>PRK13391 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.64 E-value=3.2e-15 Score=99.27 Aligned_cols=86 Identities=23% Similarity=0.322 Sum_probs=71.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------c-cCCC---CCCCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------Q-EKSK---PVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~-~~~~---~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+++++|.+|+|.+||++|.+||.+.. . ...+ .....+++..+++++++.|+.|.
T Consensus 403 R~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 482 (511)
T PRK13391 403 RAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPR 482 (511)
T ss_pred cCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCc
Confidence 789999999999999999999999985510 0 0011 11234689999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHhc
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.+.+++++|+|++||++|..|++.|...
T Consensus 483 ~i~~~~~~P~t~~gKv~r~~l~~~~~~~ 510 (511)
T PRK13391 483 SIDFEDELPRLPTGKLYKRLLRDRYWGN 510 (511)
T ss_pred EEEEeecCCCCCccceeHHHHHHHhhcc
Confidence 9999999999999999999999998653
>PRK10946 entE enterobactin synthase subunit E; Provisional
Back Show alignment and domain information
Probab=99.63 E-value=2.1e-15 Score=100.86 Aligned_cols=85 Identities=38% Similarity=0.515 Sum_probs=71.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhh-CCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDK-LAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||.+|..+|.+.. . .......+..++.+++++. ++.|+.|..+.+
T Consensus 430 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~l~~~~~~~~l~~~~~P~~~~~ 509 (536)
T PRK10946 430 REKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQGIAEFKLPDRVEC 509 (536)
T ss_pred cccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCCCHHHHHHHHHhCCccccccCcEEEE
Confidence 789999999999999999999999996511 0 0111236778899999886 999999999999
Q ss_pred ecccCCCCCCcccHHHHHHHHHh
Q 046846 63 WDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++|+|++||++|+.|++++..
T Consensus 510 ~~~iP~t~~GKv~r~~L~~~~~~ 532 (536)
T PRK10946 510 VDSLPLTAVGKVDKKQLRQWLAS 532 (536)
T ss_pred eccCCCCCCCcccHHHHHHHHHh
Confidence 99999999999999999998764
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.63 E-value=1.9e-15 Score=101.29 Aligned_cols=82 Identities=26% Similarity=0.494 Sum_probs=69.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc------------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ------------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~------------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|++|+|+++|.+|+|.+||++|..++.|... ...+...+.+++..++.+.++.++.|..+.+
T Consensus 456 R~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 535 (557)
T PRK07059 456 RKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPALTEEDVKAFCKERLTNYKRPKFVEF 535 (557)
T ss_pred ccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCCCHHHHHHHHHHhcccccCCcEEEE
Confidence 7899999999999999999999999865110 0112235667899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
++++|+|++||++|+.|++.
T Consensus 536 v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 536 RTELPKTNVGKILRRELRDG 555 (557)
T ss_pred eccCCCCcccceeHHHHHhh
Confidence 99999999999999998764
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase
Back Show alignment and domain information
Probab=99.63 E-value=1.3e-15 Score=101.69 Aligned_cols=80 Identities=30% Similarity=0.466 Sum_probs=67.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCCCCCHHHHHHHHHh-hCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKPVLSLQELCTWAKD-KLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i 60 (87)
|.||+|+++|++|+|.+||++|.+||.|.. . ...+...+.+++.+++.. +++.|+.|..+
T Consensus 438 R~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i 517 (538)
T TIGR03208 438 RSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERL 517 (538)
T ss_pred ccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEE
Confidence 789999999999999999999999986511 0 111224567889999986 79999999999
Q ss_pred EEecccCCCCCCcccHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~ 80 (87)
.+++++|+|++||++|..|+
T Consensus 518 ~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 518 EVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred EEeccCCCCCccccchHhhc
Confidence 99999999999999999885
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
>PRK13383 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.63 E-value=2.5e-15 Score=100.01 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=67.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||.+|.+||.|. +....+...+.+++..+++++++.|+.|..+.
T Consensus 417 R~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 496 (516)
T PRK13383 417 REDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDIN 496 (516)
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEE
Confidence 88999999999999999999999998651 11112223456789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~ 80 (87)
+++++|+|++||++|+.|.
T Consensus 497 ~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 497 IVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred EeCCCCCCCCCcCcHHHhC
Confidence 9999999999999999873
>PRK07787 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.63 E-value=1.9e-15 Score=99.62 Aligned_cols=81 Identities=37% Similarity=0.544 Sum_probs=68.6
Q ss_pred Cc-cceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TS-ADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~-~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+ |++++++|.+|+|.+||++|..++.+.. . ...+...+.+++.+++++.++.++.|..+.+
T Consensus 371 R~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~ 450 (471)
T PRK07787 371 RESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVAADELIDFVAQQLSVHKRPREVRF 450 (471)
T ss_pred CCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCCCHHHHHHHHHhhcccccCCcEEEE
Confidence 64 8999999999999999999999986511 0 0112345778899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~ 81 (87)
++++|+|.+||++|+.|++
T Consensus 451 ~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 451 VDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred eccCCCCCCccccHHHhcc
Confidence 9999999999999999875
>PRK12316 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.63 E-value=9.2e-16 Score=119.99 Aligned_cols=82 Identities=27% Similarity=0.452 Sum_probs=70.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+||+||++|+||+|.|||.+|.++|+|.. ....+...+.+++++++++.|+.|++|..+.+
T Consensus 2402 R~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~~~~~~~l~~~l~~~Lp~~~vP~~~~~ 2481 (5163)
T PRK12316 2402 RIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWVV 2481 (5163)
T ss_pred CCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCCccCHHHHHHHHHhhCchhcCcceEee
Confidence 899999999999999999999999996611 01122345678899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
+++||+|++||++|+.|.+.
T Consensus 2482 l~~lP~t~~GKidR~~L~~~ 2501 (5163)
T PRK12316 2482 LERLPLNPNGKLDRKALPKP 2501 (5163)
T ss_pred ecccCCCCCCccCHhhcCCC
Confidence 99999999999999998654
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.63 E-value=4.2e-15 Score=98.42 Aligned_cols=85 Identities=29% Similarity=0.487 Sum_probs=69.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCC---CCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPV---LSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~---~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+|+++|.+|+|.+||.+|.++|.+.. ....+.. ...+++.++++.+++.++.|.
T Consensus 390 R~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~ 469 (502)
T PRK08276 390 RKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPR 469 (502)
T ss_pred cCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCc
Confidence 789999999999999999999999985510 0011111 123478999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.+++++|+|++||++|..|++.+..
T Consensus 470 ~i~~~~~lP~t~~GKi~r~~L~~~~~~ 496 (502)
T PRK08276 470 SIDFEDELPRTPTGKLYKRRLRDRYWE 496 (502)
T ss_pred EEEEecCCCCCcccchhHHHHHHHHHh
Confidence 999999999999999999999999754
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.62 E-value=1.6e-15 Score=102.87 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=67.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHh-CCCccc-----cc---------------CCC-CCCCHHHHHHHHHhhCC-CCCC-
Q 046846 1 TSADIMKVGGYKLSALEIESVLLE-KKAKRD-----QE---------------KSK-PVLSLQELCTWAKDKLA-PYKL- 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~-~~~v~~-----~~---------------~~~-~~~~~~~l~~~~~~~l~-~~~~- 56 (87)
|+||+||++|++|+|.|||++|.. ||.|.. .. ..+ ...+.+++.+++++.+. .|++
T Consensus 496 R~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 575 (612)
T PRK12476 496 RIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLA 575 (612)
T ss_pred ccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCc
Confidence 899999999999999999999985 785521 00 011 12455778888888877 4777
Q ss_pred CceEEEec--ccCCCCCCcccHHHHHHHHHhc
Q 046846 57 PTRLFLWD--SLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 57 p~~i~~v~--~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
|..+.+++ +||+|++||++|+.|++.+...
T Consensus 576 p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~ 607 (612)
T PRK12476 576 VADVRLVPAGAIPRTTSGKLARRACRAQYLDG 607 (612)
T ss_pred ceEEEEECCCCcCcCCchHHHHHHHHHHHHcC
Confidence 68899987 6999999999999999988653
>PRK10252 entF enterobactin synthase subunit F; Provisional
Back Show alignment and domain information
Probab=99.62 E-value=2.1e-15 Score=108.57 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=68.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc----c---------------------CCCCCCCHHHHHHHHHhhCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ----E---------------------KSKPVLSLQELCTWAKDKLAPYK 55 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~----~---------------------~~~~~~~~~~l~~~~~~~l~~~~ 55 (87)
|.|++||++|++|+|.|||++|.+||.|... . ..+...+.+++.++++++|+.|+
T Consensus 858 R~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~ 937 (1296)
T PRK10252 858 RSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHM 937 (1296)
T ss_pred ccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhc
Confidence 8899999999999999999999999965211 0 01113456889999999999999
Q ss_pred CCceEEEecccCCCCCCcccHHHHHH
Q 046846 56 LPTRLFLWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 56 ~p~~i~~v~~~p~t~~gKi~r~~l~~ 81 (87)
+|..+..++++|+|++||++|+.|..
T Consensus 938 ~P~~~~~~~~lP~t~~GKidr~~L~~ 963 (1296)
T PRK10252 938 VPVVLLQLDQLPLSANGKLDRKALPL 963 (1296)
T ss_pred CCcEEEEecCCCCCCCcChhHHhcCC
Confidence 99999999999999999999999864
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Back Show alignment and domain information
Probab=99.62 E-value=2.5e-15 Score=107.00 Aligned_cols=85 Identities=24% Similarity=0.229 Sum_probs=69.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc-----cc-ccC------------CCCCCCHHHHHHHHHh-hCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK-----RD-QEK------------SKPVLSLQELCTWAKD-KLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v-----~~-~~~------------~~~~~~~~~l~~~~~~-~l~~~~~p~~i~ 61 (87)
|.||+||++|++|+|.|||++|.+||++ .+ ... .....+.+++.+++.+ .++.|+.|..+.
T Consensus 1040 R~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~l~~~~~~~~l~~~~~P~~i~ 1119 (1146)
T PRK08633 1040 RYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAEDVEELKRAIKESGLPNLWKPSRYF 1119 (1146)
T ss_pred cccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCccCHHHHHHHHHhcCCCcccCCcEEE
Confidence 8899999999999999999999999832 11 000 0123456788888875 699999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+.+
T Consensus 1120 ~~~~iP~t~~GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633 1120 KVEALPLLGSGKLDLKGLKELALA 1143 (1146)
T ss_pred EecCcCCCCCCCCcHHHHHHHHHH
Confidence 999999999999999999988654
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.62 E-value=5e-15 Score=99.37 Aligned_cols=85 Identities=29% Similarity=0.511 Sum_probs=71.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||++|..++.+.. ........+.+++.+++.+.++.|+.|..+.+
T Consensus 453 R~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~ 532 (560)
T PRK08974 453 RKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITHCRRHLTGYKVPKLVEF 532 (560)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEE
Confidence 789999999999999999999999986511 01112234567899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHHHHh
Q 046846 63 WDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++|+|.+||++|+.|++....
T Consensus 533 ~~~lP~t~~GK~~r~~l~~~~~~ 555 (560)
T PRK08974 533 RDELPKSNVGKILRRELRDEARA 555 (560)
T ss_pred hhhCCCCCCCcEeHHHHHHHHHh
Confidence 99999999999999999987654
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Back Show alignment and domain information
Probab=99.62 E-value=3e-15 Score=98.75 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=68.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc--------------cCCCCC-----CCHHHHHHHHHhhCCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ--------------EKSKPV-----LSLQELCTWAKDKLAPYKLP 57 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~--------------~~~~~~-----~~~~~l~~~~~~~l~~~~~p 57 (87)
|.||+|+++|.+|+|.+||+.+..+|.|. +. ...... .....+.+++.++++.++.|
T Consensus 396 R~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P 475 (503)
T PRK04813 396 RIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIP 475 (503)
T ss_pred cccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCC
Confidence 78999999999999999999999999651 10 000101 11245889999999999999
Q ss_pred ceEEEecccCCCCCCcccHHHHHHHHH
Q 046846 58 TRLFLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 58 ~~i~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
..+.+++++|+|.+||++|..|++.+.
T Consensus 476 ~~i~~~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 476 RKFIYRDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred eEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence 999999999999999999999998875
>TIGR01923 menE O-succinylbenzoate-CoA ligase
Back Show alignment and domain information
Probab=99.61 E-value=2.2e-15 Score=98.03 Aligned_cols=79 Identities=32% Similarity=0.475 Sum_probs=66.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|.||+|+++|.+|+|.+||++|..++.|.. . .......+...+.+++++.++.|++|..+.++
T Consensus 341 R~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~ 420 (436)
T TIGR01923 341 RRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDISQAKLIAYLTEKLAKYKVPIAFEKL 420 (436)
T ss_pred cccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCCCHHHHHHHHHHhhhCCCCCeEEEEe
Confidence 789999999999999999999999985511 0 00112356778999999999999999999999
Q ss_pred cccCCCCCCcccHHHH
Q 046846 64 DSLPRNAMGKVNKKEL 79 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l 79 (87)
++||+|++||++|..|
T Consensus 421 ~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 421 DELPYNASGKILRNQL 436 (436)
T ss_pred cCCCCCCCCceecccC
Confidence 9999999999999764
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
>TIGR03205 pimA dicarboxylate--CoA ligase PimA
Back Show alignment and domain information
Probab=99.60 E-value=4.9e-15 Score=99.08 Aligned_cols=80 Identities=28% Similarity=0.483 Sum_probs=67.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc-------------------cCCC-CCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ-------------------EKSK-PVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~-------------------~~~~-~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|.||+|+++|.+|+|.+||.++.+|+.|... ...+ ...+.+++.++++++|+.|++|..+
T Consensus 442 R~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i 521 (541)
T TIGR03205 442 RKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAV 521 (541)
T ss_pred cccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcEE
Confidence 7899999999999999999999999865110 0111 1246788999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~ 80 (87)
.+++++|+|++||++|..|+
T Consensus 522 ~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 522 EFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred EEeccCCCCcccceeHhhcC
Confidence 99999999999999998763
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
>PRK08162 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.59 E-value=1.4e-14 Score=96.87 Aligned_cols=84 Identities=29% Similarity=0.472 Sum_probs=70.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..+|.|.. ....+...+.+++.+++++.++.|++|..+.
T Consensus 437 R~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 516 (545)
T PRK08162 437 RSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVV 516 (545)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEE
Confidence 789999999999999999999999996511 0112223567889999999999999999987
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+ .++|+|++||++|..|++.+..
T Consensus 517 ~-~~iP~t~~gK~~r~~l~~~~~~ 539 (545)
T PRK08162 517 F-GELPKTSTGKIQKFVLREQAKS 539 (545)
T ss_pred e-cccCCCCCcCCcHHHHHHHHhh
Confidence 5 6899999999999999998764
>PRK05691 peptide synthase; Validated
Back Show alignment and domain information
Probab=99.59 E-value=5.9e-15 Score=114.70 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=69.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+|++||++|++|+|.|||.+|.+||.|.. . ...+.....+++.+++.++|+.|++|..+..
T Consensus 1526 R~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~ 1605 (4334)
T PRK05691 1526 RLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIR 1605 (4334)
T ss_pred ccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCCCCHHHHHHHHHHhCccccCCcEEEE
Confidence 899999999999999999999999996611 0 0112234567899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~ 81 (87)
++++|+|++||++|+.|..
T Consensus 1606 ~~~lP~t~~GKidr~~L~~ 1624 (4334)
T PRK05691 1606 LDQMPLGPSGKLDRRALPE 1624 (4334)
T ss_pred ccccCCCCCCCcChhhcCc
Confidence 9999999999999999865
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Back Show alignment and domain information
Probab=99.59 E-value=1.3e-14 Score=97.14 Aligned_cols=85 Identities=32% Similarity=0.543 Sum_probs=70.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cC-CCCCCCHHHHHHHHH-hhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EK-SKPVLSLQELCTWAK-DKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~-~~~~~~~~~l~~~~~-~~l~~~~~p~~ 59 (87)
|.||+|+++|.+|+|.+||++|..+|.|.. . .. .....+.+++.+++. ..++.+++|..
T Consensus 431 R~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~ 510 (547)
T PRK06087 431 RKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEH 510 (547)
T ss_pred cchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCCeE
Confidence 789999999999999999999999985511 0 00 123345678888875 57999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|.+++++|+|.+||++|+.|++.+..
T Consensus 511 i~~v~~iP~t~sGK~~r~~l~~~~~~ 536 (547)
T PRK06087 511 IVVIDKLPRTASGKIQKFLLRKDIMR 536 (547)
T ss_pred EEEeccCCCCCCCcCcHHHHHHHHHH
Confidence 99999999999999999999988764
>PRK09192 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.58 E-value=5.9e-15 Score=99.54 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=68.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-----c-c--------------cCCCCCCCHHHHHHHHHhhCC-CCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-----D-Q--------------EKSKPVLSLQELCTWAKDKLA-PYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-----~-~--------------~~~~~~~~~~~l~~~~~~~l~-~~~~p~~ 59 (87)
|+||+|+++|++|+|.|||++|..||.|. + . ...+...+.+++.+++++.+. .++.|..
T Consensus 459 R~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 538 (579)
T PRK09192 459 RAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAA 538 (579)
T ss_pred ccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCce
Confidence 88999999999999999999999998652 0 0 011122345678999998874 6888988
Q ss_pred EEEec--ccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWD--SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~--~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+++ +||+|.+||++|+.|++.+..
T Consensus 539 i~~~~~~~lP~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 539 VELVPPHSLPRTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred EEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence 88885 899999999999999998865
>PRK05691 peptide synthase; Validated
Back Show alignment and domain information
Probab=99.58 E-value=4.4e-15 Score=115.40 Aligned_cols=82 Identities=27% Similarity=0.372 Sum_probs=67.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc---cc--------------cCCC----CCCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR---DQ--------------EKSK----PVLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~---~~--------------~~~~----~~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+|++||++|++|.|.|||++|..+|.|. +. .... .....+.++.+++++||.|++|..
T Consensus 4123 R~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~ 4202 (4334)
T PRK05691 4123 RIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLH 4202 (4334)
T ss_pred ccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcc
Confidence 89999999999999999999999999661 10 0000 111236788999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHH
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~ 82 (87)
+..+++||+|++||+||+.|...
T Consensus 4203 ~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4203 WLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred eeecccCCCCCCCcccHhhcCCC
Confidence 99999999999999999998753
>PRK12467 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.58 E-value=8.7e-15 Score=113.33 Aligned_cols=82 Identities=28% Similarity=0.443 Sum_probs=69.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------c-C-----CCCCCCHHHHHHHHHhhCCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------E-K-----SKPVLSLQELCTWAKDKLAPYKLP 57 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~-~-----~~~~~~~~~l~~~~~~~l~~~~~p 57 (87)
|+||+||++|++|+|.|||++|.+||.|.. . . . .......+++.+++++.|+.|++|
T Consensus 911 R~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP 990 (3956)
T PRK12467 911 RMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVP 990 (3956)
T ss_pred cccCeEEECCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEecccccccccccCHHHHHHHHHhhCchhcCC
Confidence 899999999999999999999999996610 0 0 0 112345678999999999999999
Q ss_pred ceEEEecccCCCCCCcccHHHHHHH
Q 046846 58 TRLFLWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 58 ~~i~~v~~~p~t~~gKi~r~~l~~~ 82 (87)
..+.++++||+|++||++|+.|.+.
T Consensus 991 ~~~~~l~~lP~t~~GKidR~~L~~~ 1015 (3956)
T PRK12467 991 AHLLLLDSLPLTPNGKLDRKALPKP 1015 (3956)
T ss_pred ceEeeecccCCCCCCCcCHhhcCCc
Confidence 9999999999999999999998764
>PRK09188 serine/threonine protein kinase; Provisional
Back Show alignment and domain information
Probab=99.57 E-value=1.6e-14 Score=93.62 Aligned_cols=74 Identities=22% Similarity=0.197 Sum_probs=61.8
Q ss_pred CC---eeecHHHHHHHHHhCCCccc----cc-------------CCCCCCCHHHHHHHHHhhCCCCCCCceEEEecccCC
Q 046846 9 GG---YKLSALEIESVLLEKKAKRD----QE-------------KSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPR 68 (87)
Q Consensus 9 ~G---~~i~p~eIE~~l~~~~~v~~----~~-------------~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~ 68 (87)
+| +||+|. ||++|.+||.|.. .. ......+.+++.++|+++|+. ++|..+.++++||+
T Consensus 234 ~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~ 311 (365)
T PRK09188 234 TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELPADEKSLRARLAGAKPP-KPPEHIQPVAALPR 311 (365)
T ss_pred CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCHHHHHHHHHhhchh-cCCcEEEEECCCCC
Confidence 67 899999 9999999997611 00 011235678999999999999 99999999999999
Q ss_pred CCCCcccHHHHHHHHH
Q 046846 69 NAMGKVNKKELKNQLA 84 (87)
Q Consensus 69 t~~gKi~r~~l~~~~~ 84 (87)
|++||++|+.|+.++.
T Consensus 312 t~~GKi~R~~Lr~~~~ 327 (365)
T PRK09188 312 DADGTVRDDILRLIAM 327 (365)
T ss_pred CCCCCccHHHHHHHhh
Confidence 9999999999998764
>PLN02479 acetate-CoA ligase
Back Show alignment and domain information
Probab=99.56 E-value=2.8e-14 Score=96.08 Aligned_cols=84 Identities=26% Similarity=0.483 Sum_probs=68.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCC-----CCCHHHHHHHHHhhCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKP-----VLSLQELCTWAKDKLAPYKL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~-----~~~~~~l~~~~~~~l~~~~~ 56 (87)
|.||+|+++|.+|+|.+||.+|..||.+.. . ...+. ....+++.++++++|+.|+.
T Consensus 451 R~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 530 (567)
T PLN02479 451 RSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWV 530 (567)
T ss_pred cccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccC
Confidence 789999999999999999999999985510 0 00111 12346789999999999999
Q ss_pred CceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 57 PTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 57 p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|..+.+ +++|+|++||++|..|++.+..
T Consensus 531 P~~~~~-~~iP~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 531 PKSVVF-GPLPKTATGKIQKHVLRAKAKE 558 (567)
T ss_pred CceEEe-ccCCCCCccCeeHHHHHHHHHh
Confidence 999877 6799999999999999887654
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family
Back Show alignment and domain information
Probab=99.53 E-value=3.5e-14 Score=94.23 Aligned_cols=81 Identities=35% Similarity=0.552 Sum_probs=67.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCC---CCCCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSK---PVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~---~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+|+.+|.+|+|.+||++|.+++++.. . ...+ .....+.+..+++.+|+.++.|.
T Consensus 405 R~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~ 484 (508)
T TIGR02262 405 RTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPR 484 (508)
T ss_pred cccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCc
Confidence 789999999999999999999999986511 0 0011 12335788999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHH
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~ 81 (87)
.+.+++++|+|++||++|..|++
T Consensus 485 ~i~~~~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 485 WIVFVDDLPKTATGKIQRFKLRE 507 (508)
T ss_pred eEEEecCCCCCCCCcEehhhccC
Confidence 99999999999999999998864
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
>PRK05850 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.47 E-value=2.2e-13 Score=91.78 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=61.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-----------------cccCCCCCCC------HHHHHHHHHhhCCCC--C
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-----------------DQEKSKPVLS------LQELCTWAKDKLAPY--K 55 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-----------------~~~~~~~~~~------~~~l~~~~~~~l~~~--~ 55 (87)
|+||+||++|++|+|.|||++|.+||.+. +........+ ...+.+.+...+..+ .
T Consensus 457 R~~d~i~~~G~~i~p~eIE~~l~~~~~~~~~v~~v~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~ 536 (578)
T PRK05850 457 RIKDLLIVDGRNHYPDDIEATIQEITGGRVAAISVPDDGTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGL 536 (578)
T ss_pred ccccEEEECCeecCHHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999987431 0011111111 234555555544432 3
Q ss_pred CCceEEEec--ccCCCCCCcccHHHHHHHHHhc
Q 046846 56 LPTRLFLWD--SLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 56 ~p~~i~~v~--~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.|..+.+++ .||+|.+||++|+.+++.|...
T Consensus 537 ~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 537 SVADLVLVAPGSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred CceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence 577777775 8999999999999999998754
>PLN02736 long-chain acyl-CoA synthetase
Back Show alignment and domain information
Probab=99.45 E-value=1.3e-13 Score=94.37 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=61.8
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCccc---ccC-------------CC--------CCCCHHHHHHHHH-------
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRD---QEK-------------SK--------PVLSLQELCTWAK------- 48 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~---~~~-------------~~--------~~~~~~~l~~~~~------- 48 (87)
|+||+||+ +|+||+|.|||++|..||.|.. ... .+ ...+...+.++++
T Consensus 508 R~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (651)
T PLN02736 508 RKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAA 587 (651)
T ss_pred echhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHH
Confidence 88999996 7999999999999999996611 000 00 0111112222222
Q ss_pred -----------hhCCCCCCCceEEEecccC------CCCCCcccHHHHHHHHHh
Q 046846 49 -----------DKLAPYKLPTRLFLWDSLP------RNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 49 -----------~~l~~~~~p~~i~~v~~~p------~t~~gKi~r~~l~~~~~~ 85 (87)
..|+.|++|..|.++++.+ +|++||++|+.+++.|..
T Consensus 588 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~ 641 (651)
T PLN02736 588 VLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAK 641 (651)
T ss_pred HHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHH
Confidence 2599999999999998775 799999999999998864
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.41 E-value=5.5e-13 Score=89.25 Aligned_cols=84 Identities=13% Similarity=0.254 Sum_probs=63.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---c------c----------CCCCCCC---HHHHHHHHHhhCCCC--CC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---Q------E----------KSKPVLS---LQELCTWAKDKLAPY--KL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---~------~----------~~~~~~~---~~~l~~~~~~~l~~~--~~ 56 (87)
|.||+|+++|.+|+|.+||++|..||.|.. . . ......+ ...+.+++++.+..+ ..
T Consensus 435 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 514 (545)
T PRK07768 435 RVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVR 514 (545)
T ss_pred cccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999986521 0 0 0001111 234666777765543 57
Q ss_pred CceEEEec--ccCCCCCCcccHHHHHHHHH
Q 046846 57 PTRLFLWD--SLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 57 p~~i~~v~--~~p~t~~gKi~r~~l~~~~~ 84 (87)
|..+.+++ +||+|++||++|+.|++.|.
T Consensus 515 p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 515 PRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred ccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 88999987 89999999999999998764
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Back Show alignment and domain information
Probab=99.32 E-value=2.9e-12 Score=90.99 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=69.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc------------------cc--cCCCCCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR------------------DQ--EKSKPVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~------------------~~--~~~~~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|.|++||.+|+++.+.||+.++..||.+. +. ...........|++++...|+.|++|..+
T Consensus 475 R~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~~ 554 (1032)
T KOG1178|consen 475 RADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSLV 554 (1032)
T ss_pred eccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchhHHHHHHhhcccccceecceEE
Confidence 78999999999999999999999998440 00 11122334567999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~ 82 (87)
+.++.+|+|++||+|+++|...
T Consensus 555 V~l~~vPl~~~GKvDkkaL~~~ 576 (1032)
T KOG1178|consen 555 VPLAKVPLNPNGKVDKKALLEY 576 (1032)
T ss_pred EEhhhCCcCCCCCcChhhhhhh
Confidence 9999999999999999999883
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Back Show alignment and domain information
Probab=99.15 E-value=2e-10 Score=79.61 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=60.5
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCcccc---cCC-----------------------CCC-CC----------HHH
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRDQ---EKS-----------------------KPV-LS----------LQE 42 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~~---~~~-----------------------~~~-~~----------~~~ 42 (87)
|+||+||. +|++|+|++||++|.+||.|... ... +.. .+ .+.
T Consensus 556 R~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (696)
T PLN02387 556 RKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKE 635 (696)
T ss_pred cccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHH
Confidence 89999996 79999999999999999966110 000 000 00 112
Q ss_pred HHHHH-----HhhCCCCCCCceEEEecc------cCCCCCCcccHHHHHHHHHh
Q 046846 43 LCTWA-----KDKLAPYKLPTRLFLWDS------LPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 43 l~~~~-----~~~l~~~~~p~~i~~v~~------~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+.+ +..|..|.+|+.|.++++ --.|++.|++|..+.+.|..
T Consensus 636 i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~ 689 (696)
T PLN02387 636 VQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKD 689 (696)
T ss_pred HHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHH
Confidence 22222 336999999999999863 34789999999999999875
>PLN02614 long-chain acyl-CoA synthetase
Back Show alignment and domain information
Probab=99.14 E-value=9.1e-11 Score=80.91 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=60.9
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCcccc---------------cCC-----------CCCCC----------HHHH
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRDQ---------------EKS-----------KPVLS----------LQEL 43 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~~---------------~~~-----------~~~~~----------~~~l 43 (87)
|+||+||. +|+||+|.|||++|.+||.|... ... +...+ .+.+
T Consensus 517 R~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 596 (666)
T PLN02614 517 RKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFI 596 (666)
T ss_pred cchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHH
Confidence 89999995 89999999999999999965100 000 00001 1122
Q ss_pred HHHH-----HhhCCCCCCCceEEEec------ccCCCCCCcccHHHHHHHHHh
Q 046846 44 CTWA-----KDKLAPYKLPTRLFLWD------SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 44 ~~~~-----~~~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.+ +..|+.|.+++.|.+++ +-.+|+++|++|..+.+.|..
T Consensus 597 ~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~ 649 (666)
T PLN02614 597 LGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQS 649 (666)
T ss_pred HHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHH
Confidence 2222 34599999999999986 235899999999999998864
>PLN02861 long-chain-fatty-acid-CoA ligase
Back Show alignment and domain information
Probab=99.14 E-value=2e-10 Score=79.12 Aligned_cols=85 Identities=9% Similarity=0.089 Sum_probs=60.8
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCccc----ccC----------------------CCCCCCH----------HHH
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRD----QEK----------------------SKPVLSL----------QEL 43 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~----~~~----------------------~~~~~~~----------~~l 43 (87)
|+||+||. +|+||+|++||++|.+||.|.. ... .+...+. ..+
T Consensus 514 R~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (660)
T PLN02861 514 RKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYI 593 (660)
T ss_pred ccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHH
Confidence 89999995 8999999999999999996511 000 0000011 123
Q ss_pred HHHHHh-----hCCCCCCCceEEEec-cc-----CCCCCCcccHHHHHHHHHh
Q 046846 44 CTWAKD-----KLAPYKLPTRLFLWD-SL-----PRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 44 ~~~~~~-----~l~~~~~p~~i~~v~-~~-----p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.++. .+..+..+..+.+.+ .| .+|+++|++|..+.+.|..
T Consensus 594 ~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02861 594 LDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKD 646 (660)
T ss_pred HHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHH
Confidence 333332 378888999998865 45 8999999999999998865
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B
Back Show alignment and domain information
Probab=99.09 E-value=1e-10 Score=60.02 Aligned_cols=57 Identities=39% Similarity=0.577 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCcccc----cC-C--CC------CCCHHHHHHHHHhhCCCCCCCce--EEEecc-cCCCCCCc
Q 046846 17 EIESVLLEKKAKRDQ----EK-S--KP------VLSLQELCTWAKDKLAPYKLPTR--LFLWDS-LPRNAMGK 73 (87)
Q Consensus 17 eIE~~l~~~~~v~~~----~~-~--~~------~~~~~~l~~~~~~~l~~~~~p~~--i~~v~~-~p~t~~gK 73 (87)
|||++|.+||+|... .. . +. ..+.+++.++++++|++|++|+. +..+++ ||+|+|||
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVLDEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEHHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEeeecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 799999999976110 00 0 00 01448899999999999999954 444466 99999998
>PRK08180 feruloyl-CoA synthase; Reviewed
Back Show alignment and domain information
Probab=98.97 E-value=4.4e-10 Score=76.69 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=60.3
Q ss_pred CccceEE-eCCeeec--HHHHHHHHHhCCCcc---c------------ccCCC---------------CCCCHHHHHHHH
Q 046846 1 TSADIMK-VGGYKLS--ALEIESVLLEKKAKR---D------------QEKSK---------------PVLSLQELCTWA 47 (87)
Q Consensus 1 R~~d~i~-~~G~~i~--p~eIE~~l~~~~~v~---~------------~~~~~---------------~~~~~~~l~~~~ 47 (87)
|+||+|+ .+|++|+ |.|||.++..||.|. + ....+ ...+.+++.+++
T Consensus 465 R~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (614)
T PRK08180 465 RIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDEIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAF 544 (614)
T ss_pred chhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHH
Confidence 7788887 6898766 788999999999651 0 00000 012335678888
Q ss_pred HhhCCCCC--------CCceEEEecccCCCC------CCcccHHHHHHHHHh
Q 046846 48 KDKLAPYK--------LPTRLFLWDSLPRNA------MGKVNKKELKNQLAA 85 (87)
Q Consensus 48 ~~~l~~~~--------~p~~i~~v~~~p~t~------~gKi~r~~l~~~~~~ 85 (87)
.+.|+.++ +|..+.+++++|+|. +||+.|..+.+.|..
T Consensus 545 ~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~ 596 (614)
T PRK08180 545 RERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAA 596 (614)
T ss_pred HHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHH
Confidence 88777776 899999999888865 457788888887764
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase
Back Show alignment and domain information
Probab=98.95 E-value=2.9e-09 Score=69.92 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=51.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-----cccCC--------------CCC-----CC----HHHHHHHHHhhCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-----DQEKS--------------KPV-----LS----LQELCTWAKDKLA 52 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-----~~~~~--------------~~~-----~~----~~~l~~~~~~~l~ 52 (87)
|.||+|+++|.+|+|.+||.+|..||.|. ..... +.. .+ .++|..++++.+.
T Consensus 316 R~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 395 (422)
T TIGR02155 316 RSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVG 395 (422)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccC
Confidence 88999999999999999999999998662 10000 100 01 3456677777666
Q ss_pred CCCCCceEEEe--cccCCCCCCcccHH
Q 046846 53 PYKLPTRLFLW--DSLPRNAMGKVNKK 77 (87)
Q Consensus 53 ~~~~p~~i~~v--~~~p~t~~gKi~r~ 77 (87)
.+ ..+.++ ++||+|+ ||++|.
T Consensus 396 ~~---~~v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 396 VS---MDVHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred cE---EEEEEECCCCccCCC-CCceEE
Confidence 54 246665 5999987 999763
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
>PTZ00216 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=98.94 E-value=2.4e-09 Score=74.25 Aligned_cols=85 Identities=7% Similarity=0.007 Sum_probs=60.0
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCccc-----ccC-----------CC------------CCCC----------HH
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAKRD-----QEK-----------SK------------PVLS----------LQ 41 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v~~-----~~~-----------~~------------~~~~----------~~ 41 (87)
|+||+|| ++|++|+|++||+++.+||.|.. ... .+ -... .+
T Consensus 557 R~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (700)
T PTZ00216 557 RVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQK 636 (700)
T ss_pred ehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHH
Confidence 8899998 89999999999999999996631 000 00 0000 11
Q ss_pred HHHHHH-----HhhCCCCCCCceEEEec------ccCCCCCCcccHHHHHHHHHh
Q 046846 42 ELCTWA-----KDKLAPYKLPTRLFLWD------SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 42 ~l~~~~-----~~~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.+.+ +..+..|..++.+.+++ .-..|+++|++|+.+.+.|..
T Consensus 637 ~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~ 691 (700)
T PTZ00216 637 KATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYAD 691 (700)
T ss_pred HHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHH
Confidence 122222 23577888999999884 456799999999999998864
>PLN02430 long-chain-fatty-acid-CoA ligase
Back Show alignment and domain information
Probab=98.92 E-value=3.1e-09 Score=73.37 Aligned_cols=85 Identities=16% Similarity=0.097 Sum_probs=59.8
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCccc---ccCC-----------------------CCCCC----------HHHH
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRD---QEKS-----------------------KPVLS----------LQEL 43 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~---~~~~-----------------------~~~~~----------~~~l 43 (87)
|+||+||. +|++|+|++||+++.+||.|.. .... +.... .+.+
T Consensus 514 R~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 593 (660)
T PLN02430 514 RKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHI 593 (660)
T ss_pred cccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHH
Confidence 88999995 7999999999999999996510 0000 00000 1112
Q ss_pred HHH---H--HhhCCCCCCCceEEEec------ccCCCCCCcccHHHHHHHHHh
Q 046846 44 CTW---A--KDKLAPYKLPTRLFLWD------SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 44 ~~~---~--~~~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+. + +..|+.|.+++.+.+.+ .-.+|+++|++|..+.+.|..
T Consensus 594 ~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02430 594 LSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQV 646 (660)
T ss_pred HHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHH
Confidence 222 2 23599999999999875 346999999999999998864
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=98.87 E-value=1.5e-09 Score=73.38 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=70.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc--------------------ccccCCCCCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK--------------------RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v--------------------~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|..|.+...|+||+..|||+.|.....+ .+...++.+.+...+..+++..||+|.+|..+
T Consensus 509 RtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~Fl 588 (649)
T KOG1179|consen 509 RTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFL 588 (649)
T ss_pred cCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHH
Confidence 7889999999999999999999987522 11224455677889999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~ 82 (87)
++.+++++|.+-|..+..|.+.
T Consensus 589 Rl~~~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 589 RLQDEIEKTGTFKLQKTELQKE 610 (649)
T ss_pred HHHhhhhcccchhhHHHHHHHc
Confidence 9999999999999999998875
>PRK12582 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=98.80 E-value=9.5e-09 Score=70.36 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=56.5
Q ss_pred CccceEE-eCCeeecHHHHH--HHHHhCCCcc---c-cc-------------------CCCC------CCCHHHHHHHHH
Q 046846 1 TSADIMK-VGGYKLSALEIE--SVLLEKKAKR---D-QE-------------------KSKP------VLSLQELCTWAK 48 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE--~~l~~~~~v~---~-~~-------------------~~~~------~~~~~~l~~~~~ 48 (87)
|+||+|+ .+|++|+|.+|| .++..||.|. + .. .... ..+.+++.+++.
T Consensus 477 R~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 556 (624)
T PRK12582 477 RVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILR 556 (624)
T ss_pred cchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHH
Confidence 7889998 589999999885 6888898651 0 00 0000 012234555555
Q ss_pred hhC-------CCCC-CCceEEEecccC------CCCCCcccHHHHHHHHHh
Q 046846 49 DKL-------APYK-LPTRLFLWDSLP------RNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 49 ~~l-------~~~~-~p~~i~~v~~~p------~t~~gKi~r~~l~~~~~~ 85 (87)
..+ +.+. +|..+.+++++| .|++||+.|+.+.+.|..
T Consensus 557 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~ 607 (624)
T PRK12582 557 EGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAA 607 (624)
T ss_pred HHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHH
Confidence 444 4444 999999998765 466778889888888764
>PTZ00342 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=98.72 E-value=1.1e-07 Score=66.78 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=58.9
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCcc----------------ccc----------CC------CCC-CC-------
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAKR----------------DQE----------KS------KPV-LS------- 39 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v~----------------~~~----------~~------~~~-~~------- 39 (87)
|+||+|| .+|++|+|++||+++.+||.|. +.. .. +-. ..
T Consensus 591 R~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~ 670 (746)
T PTZ00342 591 RSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTD 670 (746)
T ss_pred cCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhh
Confidence 8999999 5899999999999999999550 000 00 000 00
Q ss_pred --------HHHHHHH---H--HhhCCCCCCCceEEEec-cc----CCCCCCcccHHHHHHHHHh
Q 046846 40 --------LQELCTW---A--KDKLAPYKLPTRLFLWD-SL----PRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 40 --------~~~l~~~---~--~~~l~~~~~p~~i~~v~-~~----p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.+.+. + +..|..|..++.|.+++ .| -.|++.|++|..+.+.|..
T Consensus 671 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~ 734 (746)
T PTZ00342 671 ETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF 734 (746)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence 1111211 2 23589999999998885 22 4899999999999998863
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B
Back Show alignment and domain information
Probab=98.27 E-value=4.9e-07 Score=48.70 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=33.8
Q ss_pred CeeecHHHHHHHHHhCCCcc-----------------cccCCCCCC-----CHHHHHHHHHhhCCC-CCCCceEEEec--
Q 046846 10 GYKLSALEIESVLLEKKAKR-----------------DQEKSKPVL-----SLQELCTWAKDKLAP-YKLPTRLFLWD-- 64 (87)
Q Consensus 10 G~~i~p~eIE~~l~~~~~v~-----------------~~~~~~~~~-----~~~~l~~~~~~~l~~-~~~p~~i~~v~-- 64 (87)
|.||||..||++|.++|.+. +........ ...++...+.+.+.. ..+...+.+++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~g 80 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPPG 80 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECCC
Confidence 89999999999999999651 001111111 233444444443332 22344788886
Q ss_pred ccCCCCCCcccH
Q 046846 65 SLPRNAMGKVNK 76 (87)
Q Consensus 65 ~~p~t~~gKi~r 76 (87)
++|+| +||..|
T Consensus 81 tLpr~-~~K~~R 91 (96)
T PF14535_consen 81 TLPRS-EGKAKR 91 (96)
T ss_dssp -S----SSSS-S
T ss_pred CccCC-CCcceE
Confidence 79998 688765
>TIGR03335 F390_ftsA coenzyme F390 synthetase
Back Show alignment and domain information
Probab=98.15 E-value=1.1e-05 Score=53.90 Aligned_cols=25 Identities=12% Similarity=0.448 Sum_probs=23.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~ 25 (87)
|+|||++++|.||+|.+||++|.++
T Consensus 328 R~dd~~~~~g~~~~p~~ie~~l~~~ 352 (445)
T TIGR03335 328 REAETIWISGVPFNRVDVERAVFQR 352 (445)
T ss_pred ccCceEEECCEEeCHHHHHHHHhcc
Confidence 8999999999999999999999984
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
>PTZ00297 pantothenate kinase; Provisional
Back Show alignment and domain information
Probab=98.09 E-value=2.6e-05 Score=58.51 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=57.1
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCcc---------------cc------c-----CCC--------CCCCHHH---
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAKR---------------DQ------E-----KSK--------PVLSLQE--- 42 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v~---------------~~------~-----~~~--------~~~~~~~--- 42 (87)
|+||+|| .+|++|+|+.||+.+..+|.|. +. . ..+ ...+..+
T Consensus 857 RkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~ 936 (1452)
T PTZ00297 857 PPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVA 936 (1452)
T ss_pred ccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHH
Confidence 8999999 7999999999999999998540 00 0 000 0011111
Q ss_pred -----HHHH---HHh--hCCCCCCCceEEEec------ccCCCCCCcccHHHHHHHHHh
Q 046846 43 -----LCTW---AKD--KLAPYKLPTRLFLWD------SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 43 -----l~~~---~~~--~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+. +.. .+..+.+++.+.+++ .--.|++.|++|..+.+.|..
T Consensus 937 ~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~ 995 (1452)
T PTZ00297 937 YASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSS 995 (1452)
T ss_pred hHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHH
Confidence 2222 221 255677888877764 346899999999999998875
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=97.72 E-value=7.4e-05 Score=52.29 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=56.9
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCc----------------ccccC----------CCCC--------------CC
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAK----------------RDQEK----------SKPV--------------LS 39 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v----------------~~~~~----------~~~~--------------~~ 39 (87)
|+|++|| ..|++|.|+.||++....+.| ++... .+.. ..
T Consensus 548 RkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~v 627 (691)
T KOG1256|consen 548 RKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAV 627 (691)
T ss_pred cccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHH
Confidence 8899999 699999999999999987643 00000 0000 01
Q ss_pred HHHHHHHHHh-hCCCCCCCceEEEe------cccCCCCCCcccHHHHHHHHHh
Q 046846 40 LQELCTWAKD-KLAPYKLPTRLFLW------DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 40 ~~~l~~~~~~-~l~~~~~p~~i~~v------~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
..++..+.++ .+..+..-..|.+. +.--.||+-|++|..+.+.|..
T Consensus 628 l~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~ 680 (691)
T KOG1256|consen 628 LSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKK 680 (691)
T ss_pred HHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHH
Confidence 1223333222 36667777777774 4667799999999999998865
>TIGR01733 AA-adenyl-dom amino acid adenylation domain
Back Show alignment and domain information
Probab=97.57 E-value=7.6e-05 Score=48.36 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=26.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v 28 (87)
|.||+|+++|.+|+|.+||+++..++.|
T Consensus 376 R~~~~i~~~G~~v~~~~ie~~l~~~~~v 403 (408)
T TIGR01733 376 RIDDQVKIRGYRIELGEIEAALLRHPGV 403 (408)
T ss_pred ccCCEEEeCeEEechHHHHHHHhcCcch
Confidence 7899999999999999999999998875
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=97.51 E-value=0.0005 Score=46.12 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=26.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v 28 (87)
|.|||+++.|++|+|..||.+|.+.+.+
T Consensus 332 R~dD~l~~~G~~vfp~~ie~~l~~~~~~ 359 (438)
T COG1541 332 RSDDMLIVRGVNVFPSQIERVLLQIPEV 359 (438)
T ss_pred ccccEEEECCEEeCHHHHHHHHhcccCC
Confidence 8999999999999999999999998855
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=97.38 E-value=0.00011 Score=50.44 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=59.2
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCcc----------------cccC----------CCCCC---------------
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAKR----------------DQEK----------SKPVL--------------- 38 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v~----------------~~~~----------~~~~~--------------- 38 (87)
|+||++| -+|+.|+++-||+++...|.|. +... .+-..
T Consensus 536 RKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~ 615 (678)
T KOG1180|consen 536 RKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKA 615 (678)
T ss_pred chhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHH
Confidence 8999999 5999999999999999999551 0000 00000
Q ss_pred CHHHHHHHH-HhhCCCCCCCceEEEecc------cCCCCCCcccHHHHHHHHHh
Q 046846 39 SLQELCTWA-KDKLAPYKLPTRLFLWDS------LPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 39 ~~~~l~~~~-~~~l~~~~~p~~i~~v~~------~p~t~~gKi~r~~l~~~~~~ 85 (87)
...++.+.- .++|..+..|..|++.++ .-.|..-|+.|+.+...|..
T Consensus 616 v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ 669 (678)
T KOG1180|consen 616 VLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKK 669 (678)
T ss_pred HHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHH
Confidence 012333333 446899999999999863 34466679999999988764
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Back Show alignment and domain information
Probab=96.77 E-value=0.0011 Score=46.25 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=26.0
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCc
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v 28 (87)
|+||+|+ .+|+||.|+.||+.+..+|.|
T Consensus 470 RkK~~i~l~~GknIaP~~IE~~l~~~~~I 498 (613)
T COG1022 470 RKKELIKLSNGKNIAPEPIESKLAKSPLI 498 (613)
T ss_pred cccceEECCCCcccChHHHHHHHhcCCCe
Confidence 8999999 699999999999999999954
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Back Show alignment and domain information
Probab=93.96 E-value=0.17 Score=38.10 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred cceEEeCCeeecHHHHHHHHHh-CCCc-------------ccccCCCCCCCHHHHHHHHHhhCCCCC-CCceEEEec--c
Q 046846 3 ADIMKVGGYKLSALEIESVLLE-KKAK-------------RDQEKSKPVLSLQELCTWAKDKLAPYK-LPTRLFLWD--S 65 (87)
Q Consensus 3 ~d~i~~~G~~i~p~eIE~~l~~-~~~v-------------~~~~~~~~~~~~~~l~~~~~~~l~~~~-~p~~i~~v~--~ 65 (87)
++.+-.+|.+.+|.+||.-+.. ||.| .+....++....+-+---++..|..+. +-+-+.+|+ .
T Consensus 1252 ~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~glvVvviE~~gq~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~ 1331 (1363)
T KOG3628|consen 1252 DETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATGLVVVVIECHGQQELADLVPLIVNVVLEEHYIILDVVAFVDKGV 1331 (1363)
T ss_pred cceeeecCcccCcchHHHHHHHhcccccceeeEeeCCeEEEEEEecCchhHhhhhHHHHHHHHhhcceEEEEEEEecCCc
Confidence 5667789999999999987664 7743 111222322222223333455577776 445566665 7
Q ss_pred cCCCCCCcccHHHHHHHHHhc
Q 046846 66 LPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 66 ~p~t~~gKi~r~~l~~~~~~~ 86 (87)
+|+++.|--+|..+.+.|.++
T Consensus 1332 ~p~~~~gEK~R~~I~~~w~~~ 1352 (1363)
T KOG3628|consen 1332 FPRNSRGEKQRAHILDSWLAG 1352 (1363)
T ss_pred cccCCchhhHHHHHHHHHHhc
Confidence 999999999999998887654
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme
Back Show alignment and domain information
Probab=81.22 E-value=6.1 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=20.3
Q ss_pred CccceEEe---C--CeeecHHHHHHHHHh-CCCc
Q 046846 1 TSADIMKV---G--GYKLSALEIESVLLE-KKAK 28 (87)
Q Consensus 1 R~~d~i~~---~--G~~i~p~eIE~~l~~-~~~v 28 (87)
|.+|+++. + +.+|+|..++.++.. .+.+
T Consensus 325 R~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i 358 (430)
T TIGR02304 325 RQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLI 358 (430)
T ss_pred ccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCC
Confidence 78999985 3 455699999987554 5554
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 87
d1amua_ 514
e.23.1.1 (A:) Phenylalanine activating domain of g
3e-18 d1mdba_ 536
e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B
3e-17 d3cw9a1 503
e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc
4e-17 d1lcia_ 541
e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali
4e-16 d1v25a_ 534
e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0
3e-15 d1pg4a_ 643
e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en
3e-15 d1ry2a_ 640
e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
2e-14
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514
Back Hide information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]
Score = 74.9 bits (183), Expect = 3e-18
Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA--------KRDQEK---------SKPVLSLQELCTW 46
+ +K+ G+++ E+ES+LL+ +D ++ S+ + L++L +
Sbjct: 415 NQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQF 474
Query: 47 AKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+ ++L Y +P+ D +P + GK+++K+L
Sbjct: 475 SSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLP 508
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536
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class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]
Score = 72.3 bits (176), Expect = 3e-17
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKA--------KRDQEKSK----------PVLSLQEL 43
+ D + GG K++A E+E+ LL A DQ + EL
Sbjct: 429 AKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAEL 488
Query: 44 CTWAKDK-LAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+ +++ LA YK+P R+ +S P+ +GKV+KK L+ ++ +
Sbjct: 489 KAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503
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class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]
Score = 72.0 bits (175), Expect = 4e-17
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA--------KRDQEKSKPV-----------LSLQELC 44
D++ GG + EIE VL DQ + V LS L
Sbjct: 403 DMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD 462
Query: 45 TWAK-DKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLA 84
T+ + +LA +K P R F+ D LP+NA+ KV +++L Q++
Sbjct: 463 TFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541
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class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 69.2 bits (168), Expect = 4e-16
Identities = 16/104 (15%), Positives = 43/104 (41%), Gaps = 20/104 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLE------------KKAKRDQE-------KSKPVLSLQELC 44
++K GY+++ E+ES+LL+ + + ++ +E+
Sbjct: 437 SLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIV 496
Query: 45 TWAKDKLAPYK-LPTRLFLWDSLPRNAMGKVNKKELKNQLAAQQ 87
+ ++ K L + D +P+ GK++ ++++ L +
Sbjct: 497 DYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 540
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534
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class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]
Score = 66.8 bits (162), Expect = 3e-15
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 19/102 (18%)
Query: 2 SADIMKVGGYKLSALEIESVLLE------------KKAKRDQE-------KSKPVLSLQE 42
D++K GG +S++++E+ L+ K + + + +
Sbjct: 427 LKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEEL 486
Query: 43 LCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLA 84
K A ++LP + +PR + GK K+ L+ Q
Sbjct: 487 NEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYK 528
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643
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class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]
Score = 66.6 bits (162), Expect = 3e-15
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 24/106 (22%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA-----------------------KRDQEKSKPVLSL 40
D++ V G++L EIES L+ E+ P L
Sbjct: 514 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL-Y 572
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
E+ W + ++ P P L DSLP+ GK+ ++ L+ A
Sbjct: 573 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 618
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640
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class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.1 bits (155), Expect = 2e-14
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 29/112 (25%)
Query: 4 DIMKVGGYKLSALEIESVL----------------------------LEKKAKRDQEKSK 35
D++ V G++LS EIE+ + L+ K+
Sbjct: 504 DVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD 563
Query: 36 PVLSL-QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+ + + L + + P+ P + L D LP+ GK+ ++ L+ LA +
Sbjct: 564 ELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 615
