Citrus Sinensis ID: 046865

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MESQRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEcccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccccccccccccccccEEEEEEEEEEccccEEEccccEEEEccEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHcccEEEcccEEEcccccccccEEEcccccEEEEcEEEEccccccccHHHccccccccccccccEEEcccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccEEEEcccccccccEEEEEEccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEccHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHccccHHHccHHHHHHHHccEEEEEEEEEccccEEEEEcccEEcEcEEEEEcccccccccHHHHHHHHHHccHHHHHHHcEEEEEcccccHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHcccEEEEccEEEEEEcccccEEEEEccccEEEccEEEEEcccccccHHHHHHcccccccccccEEEcccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEccccEEEEEcccEEccHHHHHHHcccHEEcHHHHHHcccccEEcc
Coil and Loop (DISEMBL)
mesqrqqqsegknkrVVVIGGGVAGSLVAKSLqfsadvtlidpkeyFEITWASLRAMvepsfgersvinhtdylvngrivaspainitenevltaEGRRVVYDYLVIAtghkdpvpktrTERLNQYQAENQKIKSARSILivgggptgveLAGEiavdfpekkvTLVHKGSRllefigpkagdktLDWLISKKVdvklgqrvnldsvsegsdtyltstgdtikadchflctgkpvgsdwlkdtilkdsldtdgmlmvdenlrvkgqknifaigdiTDIREIKQGFLAQKHAQVAAKNLKVLMVGEReskmatywphSAIAIVSLGRkdavaqlpfmttigcvpgliksrdlfvgktrkqmglepdvaha
Flexible Loop (DISEMBL)
mesqrqqqsegknkrvvVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIatghkdpvpktrTERLNQYQAenqkiksarsILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGsrllefigpkagdktldWLISKKvdvklgqrvnldsvsegsdTYLTSTGDTIKADCHFLCTGkpvgsdwlkdTILKDSLDTDGMLMVDenlrvkgqknIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMttigcvpglikSRDLFVgktrkqmglepdvaha
Low Complexity Region (SEG)
MESQRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA
Disordered region (IsUnstruct)
**************RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH***********************SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVG***************
Disordered Region (DISOPRED)
****************VVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP*****
Disordered Region (DISEMBL)
*************KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA
Disordered Region (DISPRO)
***********KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESQRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q54NS9	408	Apoptosis-inducing factor	yes	no	0.929	0.840	0.326	1e-42
Q54NS8	387	Apoptosis-inducing factor	no	no	0.929	0.886	0.331	4e-42
Q6GLW8	374	Apoptosis-inducing factor	N/A	no	0.869	0.858	0.324	2e-36
B4F6I3	374	Apoptosis-inducing factor	yes	no	0.856	0.844	0.325	4e-36
B5FXE5	373	Apoptosis-inducing factor	yes	no	0.853	0.844	0.301	1e-34
Q9BRQ8	373	Apoptosis-inducing factor	yes	no	0.861	0.852	0.319	7e-31
A5PJM4	373	Apoptosis-inducing factor	yes	no	0.869	0.860	0.310	3e-29
Q8BUE4	373	Apoptosis-inducing factor	yes	no	0.861	0.852	0.299	8e-28
P52923	378	Apoptosis-inducing factor	yes	no	0.837	0.817	0.270	2e-13
B5FG80	381	Nitric oxide reductase Fl	yes	no	0.482	0.467	0.314	2e-10

>sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA PE=3 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 201/380 (52%), Gaps = 37/380 (9%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDY 73
           KRV++IG G  GS VAK L  + +VT+++ K+ F  + AS+RA+VEP   ++  I +   
Sbjct: 28  KRVLIIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYDKL 87

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG------HKDPVPK-TRTERLNQY 126
           L NG+ +    I I+   V   +G+ + +DYLVIATG       K P+ K + TE  N Y
Sbjct: 88  LKNGKFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKISGTEIFNYY 147

Query: 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEFIGPK 180
           +  +++IK A+SILIVGGG  G E+ GEI   +P       KK+T+VH G++L   +  K
Sbjct: 148 KDISEQIKQAKSILIVGGGSVGCEVVGEIINKYPIKNKELAKKITIVHSGNKL---VSSK 204

Query: 181 AGDKTLDWLIS-----KKVDVKLGQRVNL-DSVSE------------GSDTYLTSTGDTI 222
             +K  + LI+     + V V L  R+ + D + +               TY T  G +I
Sbjct: 205 TNNK-FNNLINESMKKRNVSVILNDRIEIPDDIKQCFINQTSPNFQVSLKTYKTKNGLSI 263

Query: 223 KADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK 282
           ++D      G  + S+  K T   + ++  G + V+++ +V+G  NIFAIGDITD  E+K
Sbjct: 264 ESDFVIWTIGIKLNSESYK-TNFSNEINEIGQIKVNQSCQVQGYDNIFAIGDITDFDELK 322

Query: 283 QGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGC- 341
             + A  H  + AK +K L  G+ ++++A +     I  +SLG KD + Q+      G  
Sbjct: 323 TTYNALSHGNIVAKVIKDLSNGKNKNQLAKHKLLPPIISLSLGPKDGLTQINSNLNFGSF 382

Query: 342 VPGLIKSRDLFVGKTRKQMG 361
           +  ++KS +L + + +    
Sbjct: 383 ISRILKSNNLLINRFQTHFN 402

Putative FAD-dependent oxidoreductase.
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1

 Score =  172 bits (436), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 191/380 (50%), Gaps = 37/380 (9%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDY 73
           KRV++IGGG  G  VAK L    +VT+++ K+ F  +  S+RA+VEP   ++  I +   
Sbjct: 6   KRVLIIGGGYGGCEVAKQLDSKFNVTVVERKQTFFHSVGSVRAVVEPELVKKIYIPYDKL 65

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-------KTRTERLNQY 126
           L NG+ +    I I+       +G+ + +DYLVIATG     P       K+ +E LN +
Sbjct: 66  LKNGKFIFGTVIEISPTLAKLEDGQELTFDYLVIATGSNSLAPFKAPLEKKSSSEILNYF 125

Query: 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEFIGPK 180
           Q  +Q+IK A+SILIVGGG    EL  EI   +P       KK+T+VH GS+L   + PK
Sbjct: 126 QNFSQQIKQAKSILIVGGGAVACELVSEIVEKYPVKDSELVKKITIVHSGSKL---VNPK 182

Query: 181 AGDKTLDWLISK-----KVDVKLGQRVNL-------------DSVSEGSDTYLTSTGDTI 222
             DK  + ++SK      V+V L  R+ +              ++   S  Y T  G  I
Sbjct: 183 MNDKFTN-VVSKAMKKRNVEVILNDRITMPDEIKANLLNQTSPNIQISSQNYTTEKGVPI 241

Query: 223 KADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK 282
           +AD      G    S+  +     + ++  G L V+ + +V+G  N+FAIGD TD  E K
Sbjct: 242 QADLIIWTVGIKTNSESYQSH-FSNVINESGQLKVNLSCQVQGYNNVFAIGDCTDFDEFK 300

Query: 283 QGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQL-PFMTTIGC 341
             + A  HA +AAK +  L  G+   K+A +     I  +SLG +D + Q+ P M     
Sbjct: 301 TAYNAGYHAAIAAKAIDALSKGKSNDKLAKHKVSGPILSLSLGPQDGITQISPTMCLGSF 360

Query: 342 VPGLIKSRDLFVGKTRKQMG 361
              +IKS+ LF+ +   Q+ 
Sbjct: 361 ATKMIKSKSLFIDRYISQLN 380

Putative FAD-dependent oxidoreductase.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q6GLW8|AIFM2_XENLA Apoptosis-inducing factor 2 OS=Xenopus laevis GN=aifm2 PE=2 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 182/345 (52%), Gaps = 24/345 (6%)

Query: 34  FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVN----GRIVASPAINITE 89
           F     L+D K+ F    A+LRA VE  F  ++ I++ D   +    G++V    IN+  
Sbjct: 32  FGIPFLLVDMKDAFHHNVAALRACVESGFARKTFISYKDSFHDSFKQGKVVG---INLQT 88

Query: 90  NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----EN--QKIKSARSILIVG 143
             V+      + + +L+IATG   P P    E +++ QA    EN  ++I+ A+ +++VG
Sbjct: 89  QLVILESNEELSFSHLIIATGSNGPFPGKFNEVISKDQAIQIYENLVEEIQKAKHVVVVG 148

Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRV 202
           GG  GVE+A E+  D+PEK+VTL+H    L +  + P       + L+ K V + L Q+V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLIHSKIALADVQLQPSVRRTVKEILLRKGVRLILAQKV 208

Query: 203 -NLDSVS-----EGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLM 256
            NLD V+     E  +  L    + +  D    C G  V S   + + L D +  DG L+
Sbjct: 209 TNLDQVTPNVAQENMELQLDKDSEVVNCDLVLCCIGLKVSSSSYR-SALGDKMAEDGSLI 267

Query: 257 VDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPH 316
           V++ L+V+G +N++A+GD   I E K  + A  HA+VAA N++  ++G+    + +Y P 
Sbjct: 268 VNDYLQVQGHENVYAVGDCAYINEPKMAYYAGIHARVAATNVRNSLIGK---SLKSYIPG 324

Query: 317 SAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMG 361
           +   ++S+GR D V Q        C   + KSRD+FV K+ K+MG
Sbjct: 325 ALSMLLSMGRNDGVGQFNGYYLGRCFVTMAKSRDIFVSKSWKEMG 369

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B4F6I3|AIFM2_XENTR Apoptosis-inducing factor 2 OS=Xenopus tropicalis GN=aifm2 PE=2 SV=1

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 181/350 (51%), Gaps = 34/350 (9%)

Query: 34  FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL----VNGRIVASPAINITE 89
           F     L+D K+ F    A+LRA VE  F  ++ I++ D      + G++V    IN+  
Sbjct: 32  FGIPFVLVDLKDAFHHNVAALRASVESGFARKTFISYKDTFQDNFIQGKVVG---INLQT 88

Query: 90  NEVLTAEGRRVVYDYLVIATGHKDPVPK------TRTERLNQYQAENQKIKSARSILIVG 143
             V+      + + +L+IATG   P P       ++ + +  Y+   ++I+ A+ +++VG
Sbjct: 89  QRVILESNEELQFSHLIIATGSNGPFPGKINNVISKDQAIQVYEDLVKEIQKAKHVVVVG 148

Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRV 202
           GG  GVE+A E+  D+PEK+VTLVH    L +  + PK      + L+SK V + L Q+V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLVHSKVALADVQLQPKVRRTVKEILLSKGVRLILAQKV 208

Query: 203 -NLDSVS-----EGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLM 256
            NLD V+     E +   L    + +  D    CTG  + S         D L  DG L+
Sbjct: 209 TNLDQVTSNVAQENTVLQLDKNSEVVTCDLVLCCTGYKISSSSYSSA-FGDKLAEDGALI 267

Query: 257 VDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPH 316
           V++ L+V+G  N++A+GD   I E K  + A  HA+VAA N++  ++G+    + TY P 
Sbjct: 268 VNDYLQVQGHANVYAVGDCAYINEPKMAYYAGIHARVAATNVRNSLIGK---SLKTYKPG 324

Query: 317 SAIAIVSLGRKDAVAQLPFMTTIGCVPG-----LIKSRDLFVGKTRKQMG 361
           +   ++S+GR D V Q       GC  G     + KSRD+FV K+ K+MG
Sbjct: 325 ALSMLLSMGRNDGVGQFN-----GCYLGRFFVTMAKSRDIFVSKSWKEMG 369

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B5FXE5|AIFM2_TAEGU Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 175/338 (51%), Gaps = 23/338 (6%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGERSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D ++ F    A+LRA VE  F +++ I+++    D    G++VA   I+    +V+ +
Sbjct: 38  LVDVRDAFHHNVAALRAAVESGFAKKTFISYSVTFGDSFRQGKVVA---IDPGRQQVVLS 94

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQAENQKIKSARSILIVGGGPTGV 149
           +G  + Y +L++ATG   P P    + ++       Y+   ++I+ ++ IL+VGGG  GV
Sbjct: 95  DGEELHYSHLILATGSDGPFPGKFNQVIDMESAIQTYEDMVKEIEKSQRILVVGGGAAGV 154

Query: 150 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRV----NL 204
           E+A EI  ++P K++ L+H  + L +  + P       + L+ K V + L ++V    NL
Sbjct: 155 EMAAEIKTEYPGKEIILIHSKTALADVELLPSVRQVVKEILLRKGVRLLLSEKVSDIENL 214

Query: 205 DSVSEGSDTYL-TSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRV 263
                  D  + T  G  +  D   LCTG  + S         D + +DG L V+++L++
Sbjct: 215 RPNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINSSAYA-AAFGDKMASDGALKVNKHLQL 273

Query: 264 KGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVS 323
           +G +NI+AIGD  D++E K  + A  HA V   N   ++    +  + TY P S   ++S
Sbjct: 274 EGYENIYAIGDCADLKEPKMAYHAGLHANVVVTN---IINSLTQKPLKTYEPGSLTFLLS 330

Query: 324 LGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMG 361
           +GR D V Q+        +  + KSRDLFV K+ + MG
Sbjct: 331 MGRNDGVGQVNGYYVGRLLVTIAKSRDLFVSKSWRTMG 368

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Taeniopygia guttata (taxid: 59729)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9BRQ8|AIFM2_HUMAN Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIFM2 PE=1 SV=1

 Score =  134 bits (338), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 175/341 (51%), Gaps = 23/341 (6%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGERSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D K+ F    A+LRA VE  F +++ I+++    D    G +V    I++    VL  
Sbjct: 39  LVDMKDSFHHNVAALRASVETGFAKKTFISYSVTFKDNFRQGLVVG---IDLKNQMVLLQ 95

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQAENQKIKSARSILIVGGGPTGV 149
            G  + + +L++ATG   P P    E  +Q      Y+   ++++ +R I++VGGG  GV
Sbjct: 96  GGEALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGV 155

Query: 150 ELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRV-NLDSV 207
           E+A EI  ++PEK+VTL+H    L +  + P    +  + L+ K V + L +RV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVKEILLRKGVQLLLSERVSNLEEL 215

Query: 208 SEGS-DTYL---TSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRV 263
                  Y+   T  G  +  +   LCTG  + S   +    +  L + G L V+E+L+V
Sbjct: 216 PLNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYRKA-FESRLASSGALRVNEHLQV 274

Query: 264 KGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVS 323
           +G  N++AIGD  D+R  K  +LA  HA +A  N+ V  V +R   +  Y P +   ++S
Sbjct: 275 EGHSNVYAIGDCADVRTPKMAYLAGLHANIAVANI-VNSVKQR--PLQAYKPGALTFLLS 331

Query: 324 LGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 364
           +GR D V Q+        +  L KSRDLFV  + K M   P
Sbjct: 332 MGRNDGVGQISGFYVGRLMVRLTKSRDLFVSTSWKTMRQSP 372

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A5PJM4|AIFM2_BOVIN Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2 PE=2 SV=1

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 177/338 (52%), Gaps = 17/338 (5%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGERSVINHT-DYLVNGRIVASPAINITENEVLTAEGR 98
           L+D K+ F    A+LRA VE  F +++ I+++  +  N R      I++    VL  +G+
Sbjct: 39  LVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDGQ 98

Query: 99  RVVYDYLVIATGHKDPVP------KTRTERLNQYQAENQKIKSARSILIVGGGPTGVELA 152
            + + +L++ATG     P       ++   +  Y+    +++ ++SI++VGGG  GVE+A
Sbjct: 99  ALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYEDMVTQVQRSQSIVVVGGGSAGVEMA 158

Query: 153 GEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRV-NLDS--VS 208
            EI  ++PEK+VTL+H    L +  + P    +  + L+ K V + L +RV NL++  V+
Sbjct: 159 AEIKTEYPEKEVTLIHSKMALADTELLPCVRQEVKEILLRKGVQLLLSERVSNLEALPVN 218

Query: 209 EGSDTYLTST--GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQ 266
           E  +     T  G  + A+   +C G  + S   + +   D L ++G L V+E L+V+G 
Sbjct: 219 ERRECIKVQTDKGTEVDANLVIVCNGIKINSAAYR-SAFGDRLASNGALRVNEYLQVEGY 277

Query: 267 KNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGR 326
            +I+AIGD  D+RE K  + A  HA VA  N+   M   ++  + TY P S   ++++GR
Sbjct: 278 SHIYAIGDCADVREPKMAYHASLHANVAVANIVNSM---KQRPLKTYKPGSLTFLLAMGR 334

Query: 327 KDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 364
            D V Q+        +  L KSRDL V  + K M   P
Sbjct: 335 NDGVGQISGFYVGRLMVRLAKSRDLLVSTSWKTMKQSP 372

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8BUE4|AIFM2_MOUSE Apoptosis-inducing factor 2 OS=Mus musculus GN=Aifm2 PE=2 SV=1

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 172/341 (50%), Gaps = 23/341 (6%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGERSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D K+ F    A+LRA VE  F +++ I+++    D    G+++    I++    VL  
Sbjct: 39  LVDMKDSFHHNVAALRASVESGFAKKTFISYSATFKDNFRQGKVIG---IDLKNRMVLLQ 95

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGV 149
            G  + + +L++ATG   P P    E       +  Y+   ++I+ ++ I++VGGG  GV
Sbjct: 96  GGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQRSQFIVVVGGGSAGV 155

Query: 150 ELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRV-NLDSV 207
           E+A EI  ++PEK+VTL+H    L +  + P    +  + L+ K V + L +RV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILLRKGVQLLLSERVSNLEEL 215

Query: 208 SEGS-DTYL---TSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRV 263
                  Y+   T  G  +  +   +C G  + S   + +  +  L ++G L V+E L+V
Sbjct: 216 PRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYR-SAFESRLASNGALKVNEFLQV 274

Query: 264 KGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVS 323
           +G  NI+AIGD  D +E K  + A  HA VA  N+   M   ++  +  Y P +   ++S
Sbjct: 275 EGYSNIYAIGDCADTKEPKMAYHAGLHANVAVANIVNSM---KQRPLKAYKPGALTFLLS 331

Query: 324 LGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 364
           +GR D V Q+        +  L KSRDL +  + K M   P
Sbjct: 332 MGRNDGVGQISGFYVGRLMVRLAKSRDLLISTSWKTMRQSP 372

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death (By similarity). May contribute to genotoxin-induced growth arrest.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P52923|AIF1_YEAST Apoptosis-inducing factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIF1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 158/347 (45%), Gaps = 38/347 (10%)

Query: 38  VTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNG-RIVASPAINITENEVLTAE 96
           + L+    Y     +++R  V   +  +S++   + L +G  ++   A +  + EV+   
Sbjct: 34  IKLVTASNYVYFLPSAVRLTVSKDY-TKSILPLKNVLDSGIEVIKDTAASFDDKEVVLGS 92

Query: 97  GRRVVYDYLVIATGHK--DPVPKTRTERLNQ---YQAENQKIKSARSILIVGGGPTGVEL 151
            R + +D LV+ATG K  DP+  T T   N    ++ E  +I  A  IL +GGG    EL
Sbjct: 93  DRAIKFDILVLATGSKWADPIGSTYTFGDNYKEYFEREASRISDADHILFLGGGFVNCEL 152

Query: 152 AGEIAVDFPE------KKVTLVHKGSRLLEFIGPKAG--DKTLDWLISKKVDVKLGQRVN 203
           AGE+   + E      K+++++H   +LL    P +G  + TL   ++  +  K G  + 
Sbjct: 153 AGELLFKYLEEIRSGKKRISIIHNSDKLL----PDSGLYNDTLRKNVTDYLS-KNGITLY 207

Query: 204 LDSVSEGSDT----YLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE 259
           L++V    DT         G +   D   +  G  +  +   ++I  D  D  G + V++
Sbjct: 208 LNTVGASLDTSPKRIFLGEGSSKYIDADLIYRGVGISPNVPVNSI-SDLCDKKGFIQVEK 266

Query: 260 NLRVKGQK--NIFAIGDITDIREIKQGFLAQKH-AQVAAKN-LKVLMVGERESKMATYWP 315
           N RVK  +  N+FAIGD+T+ R    G + + +   V  +N +  L  G   S +     
Sbjct: 267 NFRVKAVEAGNVFAIGDVTNFR--YHGLVKRDNWVDVLTRNVISSLQEGTEASLVDADCL 324

Query: 316 HS--AIAIVSLGRKDAVAQ--LPFMTTIGCVPGLI---KSRDLFVGK 355
            +  A + VSLG      Q  LP + TI     LI   KS++LF  K
Sbjct: 325 ETGHAPSGVSLGPNAGFGQFPLPLLGTINIPSFLISRAKSKNLFSDK 371

Putative FAD-dependent oxidoreductase involved in the resistance to cercosporin and other singlet oxygen-generating photosensitizers. Translocates from mitochondria to the nucleus under apoptotic conditions, where it degrades DNA and induces apoptosis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B5FG80|NORW_VIBFM Nitric oxide reductase FlRd-NAD(+) reductase OS=Vibrio fischeri (strain MJ11) GN=norW PE=3 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 94/207 (45%), Gaps = 29/207 (14%)

Query: 89  ENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE---------RLNQYQAENQKIKSARSI 139
           E + +TA G +  YD LV+ATG    VP    +          L ++ A  QKI  A++I
Sbjct: 87  EQQTITANGEQYTYDKLVLATGSHTFVPPFHGDGCEDILTLNSLKEFSAIQQKILDAKNI 146

Query: 140 LIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK-VDVKL 198
           L++GGG  G ELA ++A     K VTLV   S LL  + P      L+    +K V V L
Sbjct: 147 LVIGGGLIGTELAMDLA--NAGKMVTLVEPNSHLLANMMPDFISLPLENACKEKGVTVNL 204

Query: 199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLM-- 256
              V   +V++    Y  +T     ++CH       + +  LK       L T+  LM  
Sbjct: 205 SDCV--QAVNKQEQGYRVTT-----SNCHSYYVDCVISAAGLKP---NTQLATEANLMVN 254

Query: 257 ----VDENLRVKGQKNIFAIGDITDIR 279
               VD NL+     NI+A+GD  +I 
Sbjct: 255 RGIVVDSNLQTSA-NNIYALGDCAEIE 280

One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase.

Vibrio fischeri (strain MJ11) (taxid: 388396)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
359487025	365	PREDICTED: apoptosis-inducing factor hom	0.945	0.956	0.746	1e-154
224059230	362	predicted protein [Populus trichocarpa]	0.956	0.975	0.752	1e-154
147860316	365	hypothetical protein VITISV_040675 [Viti	0.945	0.956	0.746	1e-153
225436124	368	PREDICTED: apoptosis-inducing factor hom	0.967	0.970	0.760	1e-151
356542786	361	PREDICTED: apoptosis-inducing factor hom	0.962	0.983	0.732	1e-151
356539209	359	PREDICTED: apoptosis-inducing factor hom	0.962	0.988	0.718	1e-149
15229901	367	FAD/NAD(P)-binding oxidoreductase family	0.983	0.989	0.691	1e-148
297818884	367	pyridine nucleotide-disulfide oxidoreduc	0.983	0.989	0.688	1e-148
255565779	363	apoptosis-inducing factor, putative [Ric	0.943	0.958	0.728	1e-147
297812335	365	pyridine nucleotide-disulfide oxidoreduc	0.956	0.967	0.682	1e-140

>gi|359487025|ref|XP_002266714.2| PREDICTED: apoptosis-inducing factor homolog A-like [Vitis vinifera] gi|296084446|emb|CBI25005.3| unnamed protein product [Vitis vinifera]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/351 (74%), Positives = 308/351 (87%), Gaps = 2/351 (0%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDY 73
           KRVV++GGG+AGSL+AKSLQF AD+ L+DPKEYFEI WASLRAMVEPSF ER+VINH+DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           L NG++V S A+NI +NEVLT+ G+ + YDYLVIATGH D VPKTRTERL QYQAE++KI
Sbjct: 74  LTNGKLVVSTAVNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLEQYQAESEKI 133

Query: 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
           KSA SILIVGGGPTGVELAGEI VDFP+KKVTLVH+GSRLLEFIG KA  K LDWL SKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 194 VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDG 253
           V+V L Q V++++ S+G  TY TS G+TI+ADCHF+CTGKP+GS WLKDTILKD+LD  G
Sbjct: 194 VEVLLNQSVDINTASDG--TYQTSGGETIRADCHFVCTGKPIGSSWLKDTILKDNLDGHG 251

Query: 254 MLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY 313
            L+VD+NLRV+G KN+FAIGDIT I EI+QG+LAQ+HA VAAKN+K+LM GE+E+K+ATY
Sbjct: 252 KLVVDDNLRVRGLKNVFAIGDITAIPEIQQGYLAQRHAVVAAKNIKMLMSGEKETKLATY 311

Query: 314 WPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 364
            P SAIAIVSLGR+DAVAQLPF T  GC+PG+IKSRDLFVGKTRKQMGL+P
Sbjct: 312 KPGSAIAIVSLGRRDAVAQLPFATICGCIPGMIKSRDLFVGKTRKQMGLKP 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059230|ref|XP_002299779.1| predicted protein [Populus trichocarpa] gi|222847037|gb|EEE84584.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/355 (75%), Positives = 303/355 (85%), Gaps = 2/355 (0%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHT 71
           + +R+VVIGGG+AGSL+AKSLQF ADVT IDPKEYFEITWA+LR MVEPSFGERSVINH 
Sbjct: 7   EKRRLVVIGGGIAGSLLAKSLQFHADVTFIDPKEYFEITWANLRTMVEPSFGERSVINHR 66

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQ 131
           DY  NGRIV S AI ITE EVLTA+   + YDYLVIATGH+DPVPKTR ERL +YQAEN+
Sbjct: 67  DYYTNGRIVTSTAIGITETEVLTADDFSIPYDYLVIATGHRDPVPKTRMERLKEYQAENE 126

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS 191
           KIKSA+S+LIVGGGPTGVELAGEI+VDFPEK VTLVH GSRLLEFIGPKA DKTL WL S
Sbjct: 127 KIKSAQSVLIVGGGPTGVELAGEISVDFPEKHVTLVHSGSRLLEFIGPKASDKTLQWLTS 186

Query: 192 KKVDVKLGQRVNLDSV--SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSL 249
           K+VDVKL QRV+L+SV  S GS  Y T+ G++I+ADCHFLCTGKP+GS WL+ TIL  +L
Sbjct: 187 KRVDVKLEQRVDLNSVTDSNGSKIYHTTAGESIRADCHFLCTGKPLGSGWLEGTILNSNL 246

Query: 250 DTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESK 309
           D+ G LMVDE LRVKG+KNIFAIGDITD+ EIKQG+LAQKHA VAA NLK+LM G +E K
Sbjct: 247 DSRGRLMVDEYLRVKGRKNIFAIGDITDVPEIKQGYLAQKHALVAAANLKLLMSGGKERK 306

Query: 310 MATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 364
           M++Y P S  AIVSLGR+DAVAQ P+ T IG VPG+IKSRDLFVGKTRKQ GL+P
Sbjct: 307 MSSYKPGSTTAIVSLGRRDAVAQFPYTTLIGIVPGMIKSRDLFVGKTRKQRGLQP 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860316|emb|CAN79702.1| hypothetical protein VITISV_040675 [Vitis vinifera]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/351 (74%), Positives = 306/351 (87%), Gaps = 2/351 (0%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDY 73
           KRVV++GGG+AGSL+AKSLQF AD+ L+DPKEYFEI WASLRAMVEPSF ER+VINH+DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           L NG++V S A NI +NEVLT+ G+ + YDYLVIATGH D VPKTRTERL QYQAE++KI
Sbjct: 74  LTNGQLVVSTAXNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLKQYQAESEKI 133

Query: 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
           KSA SILIVGGGPTGVELAGEI VDFP+KKVTLVH+GSRLLEFIG KA  K LDWL SKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 194 VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDG 253
           V+V L Q V++++ S+G  TY TS G+TI ADCHF+CTGKP+GS WLKDTILKD+LD  G
Sbjct: 194 VEVLLNQSVDINTASDG--TYQTSGGETIXADCHFVCTGKPIGSSWLKDTILKDNLDGHG 251

Query: 254 MLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY 313
            L+VD+NLRV+G KN+FAIGDIT I EI+QG+LAQ+HA VAAKN+K+LM GE+E+K+ATY
Sbjct: 252 KLVVDDNLRVRGLKNVFAIGDITAIPEIQQGYLAQRHAVVAAKNIKMLMSGEKETKLATY 311

Query: 314 WPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 364
            P SAIAIVSLGR+DAVAQLPF T  GC+PG+IKSRDLFVGKTRKQMGL+P
Sbjct: 312 KPGSAIAIVSLGRRDAVAQLPFATICGCIPGMIKSRDLFVGKTRKQMGLKP 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436124|ref|XP_002278901.1| PREDICTED: apoptosis-inducing factor homolog A [Vitis vinifera] gi|296084033|emb|CBI24421.3| unnamed protein product [Vitis vinifera]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 273/359 (76%), Positives = 311/359 (86%), Gaps = 2/359 (0%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHT 71
           KN+RVVVIGGGVAGSL+AKSLQF ADVTL+DPKEYFEI WASLRAMVEPSF ERSVINH 
Sbjct: 9   KNRRVVVIGGGVAGSLLAKSLQFHADVTLLDPKEYFEIPWASLRAMVEPSFAERSVINHR 68

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQ 131
           DYL NGRI+ S AIN+T+ EVLTAEGR +VYDYLVIATGH   VP+TRTERL+QY+ EN+
Sbjct: 69  DYLTNGRIITSRAINVTDKEVLTAEGRALVYDYLVIATGHLYSVPRTRTERLSQYETENE 128

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS 191
           KI+SA SILI+GGGPTGVEL GEIAVDFPEK+VTLVH GSRL++FIGPKA +KTLDWL S
Sbjct: 129 KIRSAGSILIIGGGPTGVELTGEIAVDFPEKEVTLVHNGSRLMQFIGPKASNKTLDWLRS 188

Query: 192 KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT 251
           K+V+VKL Q VNL+SVS+GS TY TS G+TI+ADCHFLCTG P+GS WLK+T LKD LD 
Sbjct: 189 KRVEVKLEQSVNLNSVSDGSRTYQTSAGETIEADCHFLCTGSPLGSAWLKETFLKDKLDI 248

Query: 252 DGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMA 311
            G LMVD+NLRVK   NIFAIGDITDI EIKQG+LAQKHA+V A NLK+LM G +ESKMA
Sbjct: 249 HGRLMVDKNLRVKDHSNIFAIGDITDIPEIKQGYLAQKHAEVVATNLKLLMGGGKESKMA 308

Query: 312 TYWPHS--AIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAH 368
           TY P S  AI  VSLGR++AVAQLPF TTIG +PG+IKSRDLFVGKTRK++GL+P + H
Sbjct: 309 TYEPQSMKAIVSVSLGRREAVAQLPFTTTIGHIPGMIKSRDLFVGKTRKRIGLDPHIVH 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542786|ref|XP_003539846.1| PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/355 (73%), Positives = 300/355 (84%)

Query: 15  RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL 74
           RVV++GGGVAGS+VAKSLQF A VTL+DPKEYFEITWASLR+MVEPSF ERSVINH DY 
Sbjct: 7   RVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRSMVEPSFAERSVINHRDYF 66

Query: 75  VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIK 134
            NG IV S A+N+TE EVLTA+G R+ YDYLVIATGH DP+PK+R ERLNQ++ +NQKIK
Sbjct: 67  TNGDIVTSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKEDNQKIK 126

Query: 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKV 194
           SA+SILI+GGGPTGVELAGEIAVDFP+KK+TLVHKG+RLLEFIG KAGDKTL+WL SK V
Sbjct: 127 SAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFIGAKAGDKTLNWLKSKNV 186

Query: 195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGM 254
            VKL Q V+L++  +G   Y TS G+TI+ADCHFLC GKP+ S WLK+T+LK+ LD  G 
Sbjct: 187 VVKLEQSVDLNAFKDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDLDGQGR 246

Query: 255 LMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYW 314
           + VDE LRVKG+ NIFAIGDITDI EIKQGFLAQ+ A+V  KNLKV++ G RE +M TY 
Sbjct: 247 IKVDEKLRVKGKDNIFAIGDITDIPEIKQGFLAQQQAEVVVKNLKVILEGGRECRMETYK 306

Query: 315 PHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369
           PHSAIAIVSLGRKDAVAQLPF+T  G +PG IKS DLFVGKTRKQMGL PD+  A
Sbjct: 307 PHSAIAIVSLGRKDAVAQLPFLTIGGRIPGFIKSGDLFVGKTRKQMGLNPDIVQA 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539209|ref|XP_003538092.1| PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/355 (71%), Positives = 299/355 (84%)

Query: 10  EGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVIN 69
           E   KRVV++GGGVAGS+VAKSLQF A VTL+DPKEYFEITWASLR MVEPSF ERS+IN
Sbjct: 2   EKDGKRVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRCMVEPSFAERSLIN 61

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAE 129
           H DYL NG I+ S A+N+TE EVLTA+G R+ YDYLVIATGH DP+PK+R ERLNQ++ +
Sbjct: 62  HRDYLTNGDIITSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKED 121

Query: 130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWL 189
           N++IKSA+SILI+GGGPTGVELAGEIAVDFP+KK+TLVHKG+RLLEF+G KAGDKTL+WL
Sbjct: 122 NREIKSAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFVGAKAGDKTLNWL 181

Query: 190 ISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSL 249
            SK V VKL Q V++++ ++G   Y TS G+TI+ADCHFLC GKP+ S WLK+T+LK+ L
Sbjct: 182 KSKNVVVKLEQSVDMNAFTDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDL 241

Query: 250 DTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESK 309
           D  G + VDE LRVKG+ NIFAIGDITDI EIKQGFLAQ+ A+V  KNLKV + G RE +
Sbjct: 242 DGQGRIKVDERLRVKGRNNIFAIGDITDIPEIKQGFLAQQQAEVVVKNLKVTIEGGRECR 301

Query: 310 MATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 364
           M TY PHSAIAIVSLGRKDAVAQLPF+T  G +PG IKS DLFVGKTRKQMGL P
Sbjct: 302 METYKPHSAIAIVSLGRKDAVAQLPFLTISGRIPGFIKSGDLFVGKTRKQMGLNP 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229901|ref|NP_190005.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|7635464|emb|CAB88427.1| putative protein [Arabidopsis thaliana] gi|21536882|gb|AAM61214.1| unknown [Arabidopsis thaliana] gi|25083044|gb|AAN72037.1| putative protein [Arabidopsis thaliana] gi|30725576|gb|AAP37810.1| At3g44190 [Arabidopsis thaliana] gi|332644353|gb|AEE77874.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/363 (69%), Positives = 302/363 (83%)

Query: 4   QRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFG 63
           ++ +   GK KRV+VIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEP+F 
Sbjct: 2   EKTESVSGKGKRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFA 61

Query: 64  ERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL 123
           ERSVINH  YL NGR+V SPA+NIT+ +VLTA+G    YDYLVIATGH D +PKTR E+L
Sbjct: 62  ERSVINHKKYLQNGRVVTSPAVNITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKL 121

Query: 124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD 183
           +QYQ E++KIKS+ SILIVGGGP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA D
Sbjct: 122 SQYQTEHEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAAD 181

Query: 184 KTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
           K LDW+ SK+V+V L QRV+L S S+GS TY TS G+TI ADCHFLCTGKP+ S+WLK T
Sbjct: 182 KALDWMKSKRVEVILNQRVDLSSASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGT 241

Query: 244 ILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV 303
           +LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+ E+KQG++A+KHA VA KN+K+LM 
Sbjct: 242 VLKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDVPEMKQGYIAEKHASVATKNIKLLMS 301

Query: 304 GERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLE 363
           G  E KM+TY P   IAI+SLGRKD+VAQ PFMT  GC+PGLIKS+DLFVGKTRK  GL+
Sbjct: 302 GGNEKKMSTYKPGPDIAIISLGRKDSVAQFPFMTVSGCIPGLIKSKDLFVGKTRKARGLD 361

Query: 364 PDV 366
           P++
Sbjct: 362 PNL 364

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818884|ref|XP_002877325.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323163|gb|EFH53584.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 250/363 (68%), Positives = 301/363 (82%)

Query: 4   QRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFG 63
           ++ +   GK +RVVVIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEPSF 
Sbjct: 2   EKTESKSGKGRRVVVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPSFA 61

Query: 64  ERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL 123
           ERSVINH  YL NGR+V SPA+NIT+ +V+TA+G    YDYLVIATGH D +PKTR E+L
Sbjct: 62  ERSVINHKKYLQNGRVVTSPAVNITDTDVVTADGLVFGYDYLVIATGHNDVLPKTRQEKL 121

Query: 124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD 183
           +QYQAE +KIKS+ SILIVGGGP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA D
Sbjct: 122 SQYQAEYEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAAD 181

Query: 184 KTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
           K  DW+ SK+V+V L QRV+L S S+G+ TY TS G+TI ADCHFLCTGKP+ S+WLK T
Sbjct: 182 KAFDWMKSKRVEVILNQRVDLSSASDGNKTYRTSGGETIHADCHFLCTGKPLSSEWLKGT 241

Query: 244 ILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV 303
           +LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+ E+KQG++A+KHA VA KN+K+LM 
Sbjct: 242 VLKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDVLEMKQGYIAEKHASVATKNIKLLMS 301

Query: 304 GERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLE 363
           G  E KM+TY P   IAI+SLGRKD+VAQ PFMT  GC+PGLIKS+DLFVGKTRK  GL+
Sbjct: 302 GGNEKKMSTYKPGPDIAIISLGRKDSVAQFPFMTVSGCIPGLIKSKDLFVGKTRKARGLD 361

Query: 364 PDV 366
           P++
Sbjct: 362 PNI 364

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565779|ref|XP_002523879.1| apoptosis-inducing factor, putative [Ricinus communis] gi|223536967|gb|EEF38605.1| apoptosis-inducing factor, putative [Ricinus communis]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/354 (72%), Positives = 301/354 (85%), Gaps = 6/354 (1%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDY 73
           +RVVVIGGG+AGSL+AK+LQF A +TL+DPKEYFEITWA+LRA+VEPSF ERSVINH DY
Sbjct: 11  RRVVVIGGGIAGSLIAKNLQFDAHLTLVDPKEYFEITWANLRALVEPSFAERSVINHRDY 70

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
             NGRI+AS A+++T+ +VLTA+G+ + YDYLVIATGH D VPKTRTERL +YQA N+KI
Sbjct: 71  FTNGRIIASSAVDVTDADVLTADGQVIPYDYLVIATGHADSVPKTRTERLTEYQAGNEKI 130

Query: 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
           KSA SILIVGGGPTGVELAGEIA DFPEKKVTLVH GSRL+EFIGPKA +KTL WL SK 
Sbjct: 131 KSAHSILIVGGGPTGVELAGEIAADFPEKKVTLVHDGSRLMEFIGPKAANKTLKWLRSKN 190

Query: 194 VDVKLGQRVNLDSVSEGSD-----TYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDS 248
           V+VKL QRV+L+S++ GSD     TY TS G+TIKADCHFLCTG P+GS WLKDT+LK++
Sbjct: 191 VEVKLEQRVDLNSIT-GSDGNCTKTYHTSAGETIKADCHFLCTGIPLGSAWLKDTVLKNN 249

Query: 249 LDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERES 308
           LD +G L VDE LRV+G KNIFAIGDIT+I EIKQG+LA+ HA VAA NLK+LM G +ES
Sbjct: 250 LDANGRLEVDEYLRVRGWKNIFAIGDITNIPEIKQGYLAESHADVAAGNLKLLMAGGKES 309

Query: 309 KMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGL 362
           KMATY P S  A+VSLGR+D VAQ PF+T  G VPG+IKSRDLFVGKTRK+ GL
Sbjct: 310 KMATYKPGSVTALVSLGRRDGVAQFPFVTISGIVPGMIKSRDLFVGKTRKRRGL 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812335|ref|XP_002874051.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319888|gb|EFH50310.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/353 (68%), Positives = 287/353 (81%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHT 71
           + KRVVVIGGG+AGSL AK LQF ADVTLIDPKEYFEITWASLR+MVEP F ER+VI+H 
Sbjct: 10  QGKRVVVIGGGIAGSLAAKLLQFDADVTLIDPKEYFEITWASLRSMVEPKFAERTVIDHK 69

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQ 131
            YL  GR+V SPAINITE++V+T +G  + YDYLVIATGH D  PKTR E+L+ YQAE +
Sbjct: 70  SYLKQGRVVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQEKLSHYQAEYE 129

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS 191
           KIKS+ S+LIVGGGP+GVELA EIAVDFPEKKVTLVHKG RLLEF+G KA DK  DWL S
Sbjct: 130 KIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLES 189

Query: 192 KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT 251
           KKV+V L Q V+L S S+G+ TY TS G+TI ADCHFLC GKP+ S WL  T+LKDSLD 
Sbjct: 190 KKVEVILNQSVDLSSASDGNKTYRTSGGETIHADCHFLCVGKPLSSQWLNGTVLKDSLDG 249

Query: 252 DGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMA 311
            G +MVDE LR++G+ N+FAIGDIT+I E+KQG++A+ HA V  KN+KV+M   ++ KM+
Sbjct: 250 KGRVMVDEYLRIRGRSNLFAIGDITNIPEMKQGYIAETHANVVVKNIKVMMSSGKKKKMS 309

Query: 312 TYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 364
           TY P   +AIVSLGRKD+VAQ PF+T +GC+PGLIKS+DLFVGKTRK  GL P
Sbjct: 310 TYKPGPEMAIVSLGRKDSVAQFPFVTVVGCLPGLIKSKDLFVGKTRKARGLNP 362

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2081373	367	AT3G44190 [Arabidopsis thalian	0.983	0.989	0.691	4.1e-136
TAIR|locus:504956456	365	AT5G22140 "AT5G22140" [Arabido	0.981	0.991	0.662	1.6e-127
DICTYBASE|DDB_G0286241	397	aifD "putative apoptosis induc	0.886	0.823	0.327	1.9e-42
UNIPROTKB|Q9BRQ8	373	AIFM2 "Apoptosis-inducing fact	0.934	0.924	0.322	4.2e-40
UNIPROTKB|A5PJM4	373	AIFM2 "Apoptosis-inducing fact	0.934	0.924	0.314	6.1e-39
UNIPROTKB|E1BR24	373	AIFM2 "Uncharacterized protein	0.921	0.911	0.307	7.8e-39
UNIPROTKB|F1SUD4	373	AIFM2 "Uncharacterized protein	0.962	0.951	0.313	1.5e-37
RGD|1304964	373	Aifm2 "apoptosis-inducing fact	0.926	0.916	0.303	1.5e-37
MGI|MGI:1918611	373	Aifm2 "apoptosis-inducing fact	0.926	0.916	0.303	3.9e-37
UNIPROTKB|E2RQW8	373	AIFM2 "Uncharacterized protein	0.934	0.924	0.304	4.9e-37

TAIR|locus:2081373 AT3G44190 [Arabidopsis thaliana (taxid:3702)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 251/363 (69%), Positives = 302/363 (83%)

Query:     4 QRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFG 63
             ++ +   GK KRV+VIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEP+F 
Sbjct:     2 EKTESVSGKGKRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFA 61

Query:    64 ERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL 123
             ERSVINH  YL NGR+V SPA+NIT+ +VLTA+G    YDYLVIATGH D +PKTR E+L
Sbjct:    62 ERSVINHKKYLQNGRVVTSPAVNITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKL 121

Query:   124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD 183
             +QYQ E++KIKS+ SILIVGGGP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA D
Sbjct:   122 SQYQTEHEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAAD 181

Query:   184 KTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
             K LDW+ SK+V+V L QRV+L S S+GS TY TS G+TI ADCHFLCTGKP+ S+WLK T
Sbjct:   182 KALDWMKSKRVEVILNQRVDLSSASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGT 241

Query:   244 ILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV 303
             +LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+ E+KQG++A+KHA VA KN+K+LM 
Sbjct:   242 VLKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDVPEMKQGYIAEKHASVATKNIKLLMS 301

Query:   304 GERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLE 363
             G  E KM+TY P   IAI+SLGRKD+VAQ PFMT  GC+PGLIKS+DLFVGKTRK  GL+
Sbjct:   302 GGNEKKMSTYKPGPDIAIISLGRKDSVAQFPFMTVSGCIPGLIKSKDLFVGKTRKARGLD 361

Query:   364 PDV 366
             P++
Sbjct:   362 PNL 364

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:504956456 AT5G22140 "AT5G22140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
 Identities = 241/364 (66%), Positives = 289/364 (79%)

Query:     1 MESQRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEP 60
             ME       +GK  RVVVIGGG+AGSL AK LQF A+VTLIDPKEYFEITWASLR+MVEP
Sbjct:     1 MEGIESGSKQGK--RVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEP 58

Query:    61 SFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT 120
              F ER+VINH  YL  GR+V SPAINITE++V+T +G  + YDYLVIATGH D  PKTR 
Sbjct:    59 KFAERTVINHKSYLKQGRLVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQ 118

Query:   121 ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK 180
             E+L+ YQ+E +KIKS+ S+LIVGGGP+GVELA EIAVDFPEKKVTLVHKG RLLEF+G K
Sbjct:   119 EKLSHYQSEYEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQK 178

Query:   181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL 240
             A DK  DWL SKKV+V L Q V+L S S+G+  Y TS G+TI AD HFLC GKP+ S WL
Sbjct:   179 AADKASDWLESKKVEVILNQSVDLSSASDGNKIYRTSGGETIHADIHFLCVGKPLSSQWL 238

Query:   241 KDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV 300
               T+LKDSLD  G +MVDE LR++G+ N+FA+GDIT+I E+KQG++A+ HA V  KN+KV
Sbjct:   239 NGTVLKDSLDGKGRVMVDEYLRIRGRSNVFAVGDITNIPEMKQGYIAETHANVVVKNIKV 298

Query:   301 LMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQM 360
             +M G ++ KM+TY P   +AIVSLGRKD+VAQ PF+T +GC+PGLIKS+DLFVGKTRK  
Sbjct:   299 MMSGGKKKKMSTYKPGPELAIVSLGRKDSVAQFPFVTVVGCLPGLIKSKDLFVGKTRKAR 358

Query:   361 GLEP 364
             GL P
Sbjct:   359 GLNP 362

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

DICTYBASE|DDB_G0286241 aifD "putative apoptosis inducing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 112/342 (32%), Positives = 184/342 (53%)

Query:    14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDY 73
             K+VV++GGG +GS+VA+ L+    VTLID K++FE T + LR +VEP   ++  I H+ Y
Sbjct:    52 KKVVIVGGGFSGSIVAQKLENDYQVTLIDTKDFFEFTPSILRTIVEPQHVKKIQILHSHY 111

Query:    74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG--HKDPVPKTR---TERLNQYQA 128
             L +  ++    + +   EV+  + R V +DYLVI +G  +  P  ++    + R N  + 
Sbjct:   112 LKHTNVIQKEVLGVQSREVIL-DDRSVEFDYLVINSGSSYNSPFKESSVVSSARANTLRE 170

Query:   129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDW 188
                 I+  + ILI+GGG  GVELA EI   F  K+VT+VH  S+L+     K    T ++
Sbjct:   171 NYYHIRKLKRILIIGGGIVGVELAAEIVDHFKGKEVTIVHSQSKLMNRFPKKTIRYTEEF 230

Query:   189 LISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDS 248
             L  + V +   +RV    V+    T++T  G  I A+  FLCTG    S+++K++   D+
Sbjct:   231 LQKRGVKLIYNERV----VAHRGQTFITDQGSEIIAEQAFLCTGIAPNSNFIKNSY-PDA 285

Query:   249 LDTDGMLMVDENLRVKGQ---KNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGE 305
             +  +G +  ++ L++ G    +NIF  GD+  +RE K    A+  A +   N+   M   
Sbjct:   286 ISENGYIKANDQLQMAGTTFYRNIFVSGDVLHVREEKLAQTAECTASIVVNNINA-MESR 344

Query:   306 RESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIK 347
              E KM +Y P +   ++SLG+  A+      +  G +P L+K
Sbjct:   345 CEHKMQSYKPFAKPVLISLGKYSAIFVYKDYSITGFLPALLK 386

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9BRQ8 AIFM2 "Apoptosis-inducing factor 2" [Homo sapiens (taxid:9606)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 117/363 (32%), Positives = 186/363 (51%)

Query:    16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHT-DY 73
             VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F +++ I+++  +
Sbjct:    14 VVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVETGFAKKTFISYSVTF 73

Query:    74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQ 127
               N R      I++    VL   G  + + +L++ATG   P P    E  +Q      Y+
Sbjct:    74 KDNFRQGLVVGIDLKNQMVLLQGGEALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYE 133

Query:   128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTL 186
                ++++ +R I++VGGG  GVE+A EI  ++PEK+VTL+H    L +  + P    +  
Sbjct:   134 DMVRQVQRSRFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVK 193

Query:   187 DWLISKKVDVKLGQRV-NLDSVSEGS-DTYL---TSTGDTIKADCHFLCTGKPVGSDWLK 241
             + L+ K V + L +RV NL+ +       Y+   T  G  +  +   LCTG  + S   +
Sbjct:   194 EILLRKGVQLLLSERVSNLEELPLNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYR 253

Query:   242 DTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVL 301
                 +  L + G L V+E+L+V+G  N++AIGD  D+R  K  +LA  HA +A  N+ V 
Sbjct:   254 KAF-ESRLASSGALRVNEHLQVEGHSNVYAIGDCADVRTPKMAYLAGLHANIAVANI-VN 311

Query:   302 MVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMG 361
              V +R   +  Y P +   ++S+GR D V Q+        +  L KSRDLFV  + K M 
Sbjct:   312 SVKQRP--LQAYKPGALTFLLSMGRNDGVGQISGFYVGRLMVRLTKSRDLFVSTSWKTMR 369

Query:   362 LEP 364
               P
Sbjct:   370 QSP 372

GO:0016021 "integral to membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008637 "apoptotic mitochondrial changes" evidence=NAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA;IMP

GO:0030261 "chromosome condensation" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|A5PJM4 AIFM2 "Apoptosis-inducing factor 2" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 114/363 (31%), Positives = 188/363 (51%)

Query:    16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHT-DY 73
             VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F +++ I+++  +
Sbjct:    14 VVIVGGGFGGIAAASQLQALNIPFVLVDMKDSFHHNVAALRASVESGFAKKTFISYSVTF 73

Query:    74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP------KTRTERLNQYQ 127
               N R      I++    VL  +G+ + + +L++ATG     P       ++   +  Y+
Sbjct:    74 KENFRQGLVVEIDLKNQTVLLEDGQALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYE 133

Query:   128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTL 186
                 +++ ++SI++VGGG  GVE+A EI  ++PEK+VTL+H    L +  + P    +  
Sbjct:   134 DMVTQVQRSQSIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSKMALADTELLPCVRQEVK 193

Query:   187 DWLISKKVDVKLGQRV-NLDS--VSEGSDTYLTST--GDTIKADCHFLCTGKPVGSDWLK 241
             + L+ K V + L +RV NL++  V+E  +     T  G  + A+   +C G  + S   +
Sbjct:   194 EILLRKGVQLLLSERVSNLEALPVNERRECIKVQTDKGTEVDANLVIVCNGIKINSAAYR 253

Query:   242 DTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVL 301
                  D L ++G L V+E L+V+G  +I+AIGD  D+RE K  + A  HA VA  N+   
Sbjct:   254 SAF-GDRLASNGALRVNEYLQVEGYSHIYAIGDCADVREPKMAYHASLHANVAVANIVNS 312

Query:   302 MVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMG 361
             M   ++  + TY P S   ++++GR D V Q+        +  L KSRDL V  + K M 
Sbjct:   313 M---KQRPLKTYKPGSLTFLLAMGRNDGVGQISGFYVGRLMVRLAKSRDLLVSTSWKTMK 369

Query:   362 LEP 364
               P
Sbjct:   370 QSP 372

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|E1BR24 AIFM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 112/364 (30%), Positives = 191/364 (52%)

Query:    15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHT-- 71
             RVV++GGG  G   A  L+ ++    L+D ++ F    A+LRA VE  F  ++ I+++  
Sbjct:    12 RVVIVGGGFGGIAAASQLKSWAVPFVLVDMRDAFHHNVAALRASVESGFARKTFISYSVT 71

Query:    72 --DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP----KT--RTERL 123
               D    G++V    I+    +VL ++G  + Y +L++ATG   P P    K       +
Sbjct:    72 FGDSFRQGKVVG---IDPERQQVLLSDGEELHYSHLILATGSDGPFPGKFNKVIDMESAI 128

Query:   124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAG 182
               Y+   ++I+ +  IL+VGGG  GVE+A EI  ++P K+VTL+H    L +  +     
Sbjct:   129 QTYEDMVKEIEKSERILVVGGGAAGVEMAAEIKTEYPAKEVTLIHSKIALADVELLQSVR 188

Query:   183 DKTLDWLISKKVDVKLGQRV-NLDSVSEGS---DTYL-TSTGDTIKADCHFLCTGKPVGS 237
              +  + L+ K V + L ++V N+++++      D  + T  G  +  D   LCTG  + S
Sbjct:   189 QEVKEILLRKGVRLLLSEKVSNVENLTTNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINS 248

Query:   238 DWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKN 297
                  T   D L ++G L V+++L+++G  NI+AIGD  +++E K  + A+ HA +   N
Sbjct:   249 SAYA-TAFGDKLASNGALNVNKHLQLEGYDNIYAIGDCANLKEPKMAYHAELHANIVVSN 307

Query:   298 LKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTR 357
             + +  +  +  K  TY P S   ++S+G+ D V Q+        +  + KSRDLFV K+ 
Sbjct:   308 I-INSLTHKPLK--TYQPGSLTFLLSMGKNDGVGQVKGYYVGHLLVTIAKSRDLFVSKSW 364

Query:   358 KQMG 361
             K MG
Sbjct:   365 KTMG 368

GO:0003677 "DNA binding" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|F1SUD4 AIFM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 117/373 (31%), Positives = 191/373 (51%)

Query:     6 QQQSEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGE 64
             Q   E     VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F +
Sbjct:     4 QVSMEAGTVHVVIVGGGFGGIAAASQLQALNIPFLLVDMKDSFHHNVAALRASVERGFAK 63

Query:    65 RSVINHT-DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP----KTR 119
             ++ I+++  +  N R      I++    VL  +G  + + +L++ATG     P    K  
Sbjct:    64 KTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDGEALSFSHLILATGSTGLFPGKFNKVS 123

Query:   120 TERL--NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF- 176
             ++++    Y+    +++ +++I++VGGG  GVE+A EI  ++PEK+VTL+H    L +  
Sbjct:   124 SQQMAIQAYEDMVTQVQRSQAIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSQMALADTE 183

Query:   177 IGPKAGDKTLDWLISKKVDVKLGQRV-NLDSV--SEGSDTYLTST--GDTIKADCHFLCT 231
             + P    +  + L+ K V + L +RV NL+ +  +E  +     T  G  + A+   +C 
Sbjct:   184 LLPCVRQEVKEILLRKGVQLLLSERVSNLEGLPLNEYQECIKVQTDKGTEVAANLVIVCN 243

Query:   232 GKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHA 291
             G  + +   +   L D L   G L V+E+L+V+G  +I+AIGD  ++RE K  + A  HA
Sbjct:   244 GIRINTLAYRSA-LGDRLAGSGALRVNEHLQVEGCSHIYAIGDCANVREPKMAYHAGLHA 302

Query:   292 QVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDL 351
              VA  N+ V  V +R  K  TY P S   ++++GR D V Q+        +  L KSRDL
Sbjct:   303 SVAVANI-VNSVKQRPLK--TYKPGSLTFLLAMGRNDGVGQISGFYVGRLMVRLAKSRDL 359

Query:   352 FVGKTRKQMGLEP 364
              V  + K M   P
Sbjct:   360 LVSTSWKTMRQSP 372

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1304964 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Rattus norvegicus (taxid:10116)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 111/366 (30%), Positives = 184/366 (50%)

Query:    16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHT--- 71
             VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F +++ I+++   
Sbjct:    14 VVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVESGFAKKTFISYSVTF 73

Query:    72 -DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLN 124
              D    G+++    I++    VL   G  + + +L++ATG   P P    E       + 
Sbjct:    74 KDNFRQGKVIG---IDLKNRMVLLEGGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQ 130

Query:   125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGD 183
              Y+   ++I+ ++ I++VGGG  GVE+A EI  ++PEK+VTL+H    L +  + P    
Sbjct:   131 AYEDMVKQIQRSQFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQ 190

Query:   184 KTLDWLISKKVDVKLGQRV-NLDSVSEGS-DTYL---TSTGDTIKADCHFLCTGKPVGSD 238
             +  + L+ K V + L +RV NL+ +       Y+   T  G  +  +   +C G  + S 
Sbjct:   191 EVKEILLRKGVQLLLSERVSNLEELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSS 250

Query:   239 WLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL 298
               +    +  L ++G L V+E L+V+G  NI+AIGD  DI+E K  + A  HA +A  N+
Sbjct:   251 AYRSAF-ESRLASNGALKVNEFLQVEGYSNIYAIGDCADIKEPKMAYHAGLHANIAVANI 309

Query:   299 KVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRK 358
                M   ++  +  Y P +   ++S+GR D V Q+        +  L KSRDL +  + K
Sbjct:   310 VNSM---KQRPLKAYKPGALTFLLSMGRNDGVGQISGFYVGRLMVRLAKSRDLLISTSWK 366

Query:   359 QMGLEP 364
              M   P
Sbjct:   367 TMRQSP 372

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0030261 "chromosome condensation" evidence=IEA;ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISO

MGI|MGI:1918611 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Mus musculus (taxid:10090)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 111/366 (30%), Positives = 183/366 (50%)

Query:    16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHT--- 71
             VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F +++ I+++   
Sbjct:    14 VVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVESGFAKKTFISYSATF 73

Query:    72 -DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLN 124
              D    G+++    I++    VL   G  + + +L++ATG   P P    E       + 
Sbjct:    74 KDNFRQGKVIG---IDLKNRMVLLQGGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQ 130

Query:   125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGD 183
              Y+   ++I+ ++ I++VGGG  GVE+A EI  ++PEK+VTL+H    L +  + P    
Sbjct:   131 AYEDMVKQIQRSQFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQ 190

Query:   184 KTLDWLISKKVDVKLGQRV-NLDSVSEGS-DTYL---TSTGDTIKADCHFLCTGKPVGSD 238
             +  + L+ K V + L +RV NL+ +       Y+   T  G  +  +   +C G  + S 
Sbjct:   191 EVKEILLRKGVQLLLSERVSNLEELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSS 250

Query:   239 WLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL 298
               +    +  L ++G L V+E L+V+G  NI+AIGD  D +E K  + A  HA VA  N+
Sbjct:   251 AYRSAF-ESRLASNGALKVNEFLQVEGYSNIYAIGDCADTKEPKMAYHAGLHANVAVANI 309

Query:   299 KVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRK 358
                M   ++  +  Y P +   ++S+GR D V Q+        +  L KSRDL +  + K
Sbjct:   310 VNSM---KQRPLKAYKPGALTFLLSMGRNDGVGQISGFYVGRLMVRLAKSRDLLISTSWK 366

Query:   359 QMGLEP 364
              M   P
Sbjct:   367 TMRQSP 372

GO:0003677 "DNA binding" evidence=ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005811 "lipid particle" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|E2RQW8 AIFM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 111/365 (30%), Positives = 186/365 (50%)

Query:    15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHT-D 72
             RVV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F +++ I+++  
Sbjct:    13 RVVIVGGGFGGIAAASQLQTLNIPFMLVDMKDSFHHNVAALRASVESGFAKKTFISYSVT 72

Query:    73 YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQY 126
             +  N R      I++    VL  +G  + + +L++ATG     P    +       +  Y
Sbjct:    73 FKENFRQGLVVEIDVQNQMVLLEDGEALPFSHLILATGSTGLFPGKFNQVSSWELAIQAY 132

Query:   127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKT 185
             +   ++++ ++S+++VGGG  GVE+A E+  +FPEK+VTL+H    L +  + P    + 
Sbjct:   133 EDMVKQVQRSQSVVVVGGGSAGVEMAAEVKTEFPEKEVTLIHSQVALADKELLPCVRQEA 192

Query:   186 LDWLISKKVDVKLGQRV-NLDSV--SEGSDTYLTST--GDTIKADCHFLCTGKPVGSDWL 240
              + L+ K V + L +RV NL+ +  +E  +     T  G  +  +   +C G  V S   
Sbjct:   193 KEILLQKGVQLLLSERVSNLEDLPLNEYRERIQVHTDKGTEVATNLVIVCNGIKVNSS-A 251

Query:   241 KDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV 300
               +     L ++G L V+E L+V+G  +I+AIGD  D++E K  + A  HA VA  N+  
Sbjct:   252 YHSAFDGHLASNGALRVNEYLQVEGYSHIYAIGDCADVKEPKMAYHAGLHASVAVANI-- 309

Query:   301 LMVGERESK-MATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQ 359
               V  R+ + +  Y P +   ++++GR D V Q+        +  L KSRDLFV  + K 
Sbjct:   310 --VNSRKQRPLKAYKPGALTFLLAMGRNDGVGQISGFYVGRLMVRLAKSRDLFVSSSWKT 367

Query:   360 MGLEP 364
             M   P
Sbjct:   368 MRQSP 372

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B5FXE5	AIFM2_TAEGU	1, ., -, ., -, ., -	0.3017	0.8536	0.8445	yes	no
A5PJM4	AIFM2_BOVIN	1, ., -, ., -, ., -	0.3106	0.8699	0.8605	yes	no
Q54NS9	AIFA_DICDI	1, ., -, ., -, ., -	0.3263	0.9295	0.8406	yes	no
B4F6I3	AIFM2_XENTR	1, ., -, ., -, ., -	0.3257	0.8563	0.8449	yes	no
Q9BRQ8	AIFM2_HUMAN	1, ., -, ., -, ., -	0.3196	0.8617	0.8525	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	4e-46
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-23
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	2e-21
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	1e-20
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	2e-16
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	1e-15
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	3e-15
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	4e-13
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	1e-11
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	1e-09
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	4e-09
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	1e-08
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-08
TIGR02053	463	TIGR02053, MerA, mercuric reductase	3e-08
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	1e-07
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	2e-07
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	2e-07
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	3e-07
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	6e-07
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	7e-07
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	2e-06
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	1e-05
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	2e-05
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-05
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	3e-05
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	4e-05
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	5e-05
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-04
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	3e-04
pfam13241	104	pfam13241, NAD_binding_7, Putative NAD(P)-binding	3e-04
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	5e-04
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	5e-04
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	8e-04
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	0.002
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	0.002
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.003
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	0.003

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  162 bits (411), Expect = 4e-46
 Identities = 108/391 (27%), Positives = 157/391 (40%), Gaps = 76/391 (19%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGE------ 64
           KR+V++GGG  G   AK L       ++TL+D ++Y    +  L  + E + G       
Sbjct: 4   KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH--LFTPL--LYEVATGTLSESEI 59

Query: 65  ----RSVINHTDY--LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT 118
               R+++  +     V G +     I+    +V  A+   + YDYLV+A G +      
Sbjct: 60  AIPLRALLRKSGNVQFVQGEVTD---IDRDAKKVTLADLGEISYDYLVVALGSETNYFGI 116

Query: 119 -------------------RTERLNQYQAENQKIKSAR--SILIVGGGPTGVELAGEIA- 156
                              R   L  ++  +Q+       +I+IVGGGPTGVELAGE+A 
Sbjct: 117 PGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAE 176

Query: 157 ----------VDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS 206
                     VD  E +V LV  G R+L    PK        L    V+V LG  V    
Sbjct: 177 RLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVT--E 234

Query: 207 VSEGSDTYLTSTGD-TIKADCHFLCTGKPV-GSDWLKDTILKDSLDTDGMLMVDENLRVK 264
           V+    T     G+  I AD      G  V  S  LKD    ++ D  G L+V+  L+V 
Sbjct: 235 VTPDGVT--LKDGEEEIPADTVVWAAG--VRASPLLKDLSGLET-DRRGRLVVNPTLQVP 289

Query: 265 GQKNIFAIGDITDIREIKQGFLAQKHAQVA-------AKNLKVLMVGERESKMATYWPHS 317
           G  +IFA GD   +            AQ A       AKN+K  + G     +  +    
Sbjct: 290 GHPDIFAAGDCAAVI---DPRPVPPTAQAAHQQGEYAAKNIKARLKG---KPLKPFKYKD 343

Query: 318 AIAIVSLGRKDAVAQLPFMTTIGCVPGLIKS 348
              + SLG   AVA L  +   G +  L+K 
Sbjct: 344 KGTLASLGDFSAVADLGGVKLKGFLAWLLKR 374

Length = 405

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 98.6 bits (246), Expect = 1e-23
 Identities = 72/292 (24%), Positives = 117/292 (40%), Gaps = 37/292 (12%)

Query: 15  RVVVIGGGVAGSLVAKSL-QFSADVTLID------------PKEYFEITWASLRAMVEPS 61
            VV+IGGG AG   A  L +    V LI+            PK    +  A    +    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPK-KLLLEVAEGLELAIGL 59

Query: 62  FGERSVINH--TDYLVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATG---HKD 113
                V      + L+   +V    I+  E  V+  +   GR + YD L+IATG      
Sbjct: 60  ALPEEVYKEFGVEVLLGTEVVD---IDRGEKTVVLKDVETGREITYDKLIIATGARPRIP 116

Query: 114 PVPKTRTERLN---QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170
            +P      L          + ++  + +++VGGG  G+ELA  +A     K+VT+V + 
Sbjct: 117 GIPGVEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALA-KL-GKEVTVVERR 174

Query: 171 SRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHF 228
            RLL     +     L+ L    + V +   V +              GD   + AD   
Sbjct: 175 DRLLARADDEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVL 234

Query: 229 LCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR 279
           +  G +P  ++ L+   ++  LD  G ++VDE LR      I+A GD+ + +
Sbjct: 235 VAIGRRPN-TELLEQAGVE--LDERGYIVVDEYLRTS-VPGIYAAGDVAEGK 282

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 87/363 (23%), Positives = 131/363 (36%), Gaps = 72/363 (19%)

Query: 15  RVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWAS----------------- 53
            +V+IGGG   +LV +           VTLI+P      T  S                 
Sbjct: 1   HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST---TPYSGMLPGMIAGHYSLDEIR 57

Query: 54  --LRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH 111
             LR +   +             V         I+    +VL A    + YD L +  G 
Sbjct: 58  IDLRRLARQAGAR---------FVIAEATG---IDPDRRKVLLANRPPLSYDVLSLDVGS 105

Query: 112 KDP---VPKTRT------------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA 156
             P   V                  R              + + +VGGG  GVE+A  + 
Sbjct: 106 TTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALR 165

Query: 157 VDFPEK----KVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD 212
              P++    +VTL+   S L  F   K     L  L  + ++V  G  V      +G+ 
Sbjct: 166 RRLPKRGLRGQVTLIAGASLLPGF-PAKVRRLVLRLLARRGIEVHEGAPV--TRGPDGA- 221

Query: 213 TYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAI 272
             + + G T+ AD     TG      WL ++ L   LD DG L VD  L+     ++FA 
Sbjct: 222 -LILADGRTLPADAILWATGA-RAPPWLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAA 277

Query: 273 GD---ITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHS-AIAIVSLGRKD 328
           GD   ITD    K G  A + A + A NL+  +   R   +  + P    + +++ G + 
Sbjct: 278 GDCAVITDAPRPKAGVYAVRQAPILAANLRASL---RGQPLRPFRPQRDYLQLLNTGDRR 334

Query: 329 AVA 331
           AVA
Sbjct: 335 AVA 337

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 92.3 bits (229), Expect = 1e-20
 Identities = 82/349 (23%), Positives = 137/349 (39%), Gaps = 63/349 (18%)

Query: 16  VVVIGGGVAGSLVAKSL---QFSADVTLI--DPKEYF---------EITWASL-RAMVEP 60
           +V++GGG AG   A +L     +A++TLI  +PK  +             ASL      P
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60

Query: 61  SFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---------- 110
            F   + I   D      + +   I+     VL  +G  + YDYLV+ATG          
Sbjct: 61  RFNRATGI---DVRTGTEVTS---IDPENKVVLLDDGE-IEYDYLVLATGARPRPPPISD 113

Query: 111 -HKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK 169
                  + R +     +A     +  + +++VG GP G+E A   A     KKVTL+  
Sbjct: 114 WEGVVTLRLRED----AEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKR--GKKVTLIEA 167

Query: 170 GSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL-----TSTGDTIK 223
             RL    + P+  ++  + L    V++ LG +V    V    +T +        G+ IK
Sbjct: 168 ADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVV--GVEGKGNTLVVERVVGIDGEEIK 225

Query: 224 ADCHFLCTGKPV-GSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK 282
           AD   +  G     +  L +  L       G ++VDE        +++A GD+ +I   +
Sbjct: 226 AD--LVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE 283

Query: 283 QGFL--------AQKHAQVAAKNL-----KVLMVGERESKMATYWPHSA 318
            G          A    ++AA+N+        ++G   S +      S 
Sbjct: 284 TGKGGRIALWAIAVAAGRIAAENIAGALRIPGLLGTVISDVGDLCAAST 332

Length = 415

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 96/392 (24%), Positives = 140/392 (35%), Gaps = 78/392 (19%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKEYFEIT---------WASLRAMVEPS 61
           K   VVV+G G AG+   ++L     ++T+I P+ +   T             R++ EP 
Sbjct: 9   KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPV 68

Query: 62  FGERSVINHTDY-LVNGRIVASPAINITENEVLTAEGRR----------VVYDYLVIATG 110
              R  +       +   +     ++  E  V      +          V YD LV+A G
Sbjct: 69  ---RPALAKLPNRYLRAVVYD---VDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHG 122

Query: 111 HKD----------------PVPKTRTERLNQYQ----AEN--QKIKSARSIL---IVGGG 145
            +                  V   R  R    Q    A      ++  + +L   +VGGG
Sbjct: 123 ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGG 182

Query: 146 PTGVELAGEIAVDF-------------PEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK 192
           PTGVE A E+A DF              E KVT++  GS +L              L   
Sbjct: 183 PTGVEFAAELA-DFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRL 241

Query: 193 KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTD 252
            VD++    V            +   G+ I        TG  VG   L    LK    + 
Sbjct: 242 GVDIRTKTAV----KEVLDKEVVLKDGEVIPTGLVVWSTG--VGPGPLTKQ-LKVDKTSR 294

Query: 253 GMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVA---AKNLKVLMVGERESK 309
           G + VD++LRVK   N+FA+GD     E     LAQ  +Q     AK     + G+  SK
Sbjct: 295 GRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGKPMSK 354

Query: 310 MATYWPHSAIAIVSLGRKDAVAQLPFMTTIGC 341
              Y   S  ++  LG   A+ QL      G 
Sbjct: 355 PFVY--RSLGSLAYLGNYSAIVQLGAFDLSGF 384

Length = 424

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 71/317 (22%), Positives = 117/317 (36%), Gaps = 59/317 (18%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEIT------------WASLRAMV 58
           K   VVVIG G AG + A    Q    V L++  E    T              +   + 
Sbjct: 3   KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIE 62

Query: 59  E-----PSFGERSVINHTDY-------------LVNGR----------IVASPAINITEN 90
           E       +G  + +   D+             L  G           ++   A  +  +
Sbjct: 63  EARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH 122

Query: 91  --EVLTAEGRRVVYDYLVIATG---HKDPVPKTRTERL--NQYQAENQKIKSARSILIVG 143
             EV   +   +  D ++IATG      P P     R+  +       ++   +S++IVG
Sbjct: 123 TVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELP--KSLVIVG 180

Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVN 203
           GG  G+E A  +       KVT+V +G R+L    P+   +    L    V + L  +V 
Sbjct: 181 GGYIGLEFAS-VFAAL-GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVT 238

Query: 204 LDSVSEGSDTYLTSTGD--TIKADCHFLCTG-KPVGSDW-LKDTILKDSLDTDGMLMVDE 259
                +         G+  TI+AD   +  G KP      L++  ++  LD  G + VD+
Sbjct: 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVE--LDDRGFIKVDD 296

Query: 260 NLRVKGQKNIFAIGDIT 276
            +       I+AIGD+ 
Sbjct: 297 QMTTN-VPGIYAIGDVI 312

Length = 454

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 77/317 (24%), Positives = 133/317 (41%), Gaps = 48/317 (15%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL---QFSADVTLIDPKEY---FEITWASLRAMVEPSFGER 65
           K K ++++GGG A ++ A SL    F+ ++ L    E    +E    S   ++E S   +
Sbjct: 2   KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFS-DERHLPYERPPLSKSMLLEDSPQLQ 60

Query: 66  SVINHTDYLVN------GRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVP-- 116
            V+    +  N      G  + +  +     E++   G    +D L IATG    P+P  
Sbjct: 61  QVLPANWWQENNVHLHSGVTIKT--LGRDTRELVLTNGESWHWDQLFIATGAAARPLPLL 118

Query: 117 -----KTRTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170
                +  T R         + ++  RS++IVG G  G+ELA          KVT++   
Sbjct: 119 DALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQ--RRCKVTVIELA 176

Query: 171 SRLLEFIGPKAGDKTLDWLISK--KVDVKLGQRVNLDSVSEGSDTYLT-STGDTIKADCH 227
           + ++   G  A      +L+ +  +  V++     ++ V +G    LT  +G+T++AD  
Sbjct: 177 ATVM---GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVV 233

Query: 228 FLCTGKPVGSDWLKDTILKDS-LDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL 286
               G         D + +++ LDT   +++DE  R      IFA GD+   R    G L
Sbjct: 234 IYGIGIS-----ANDQLAREANLDTANGIVIDEACRT-CDPAIFAGGDVAITRL-DNGAL 286

Query: 287 --------AQKHAQVAA 295
                   A   AQ+AA
Sbjct: 287 HRCESWENANNQAQIAA 303

Length = 396

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 35/230 (15%)

Query: 88  TENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTER----LN---QYQAENQKIKSARSIL 140
            E +V+ ++G +  YD LV+ATG    VP          LN   +Y+A   +++ A+ +L
Sbjct: 86  AEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVL 145

Query: 141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----EFIGPKAGDKTLDWLISKKVD 195
           +VGGG  G ELA ++      K VTLV   + LL       +  +   +    L    V 
Sbjct: 146 VVGGGLIGTELAMDLCRA--GKAVTLVDNAASLLASLMPPEVSSRLQHR----LTEMGVH 199

Query: 196 VKLGQRVNLDSVSEGSDTYL--TSTGDTIKADCHFLCTG-KPVGSDWLKDTIL--KDSLD 250
           + L  ++    + +          +G +I+ D      G +P       +T L  +  L 
Sbjct: 200 LLLKSQLQ--GLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP-------NTALARRAGLA 250

Query: 251 TDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL--AQKHAQVAAKNL 298
            +  ++VD  L+     +I+A+GD  +I      FL   Q  A   AKNL
Sbjct: 251 VNRGIVVDSYLQTS-APDIYALGDCAEINGQVLPFLQPIQLSAMALAKNL 299

Length = 377

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TERLNQYQAENQ 131
           +      T E     YDYL+++ G    VP                  T+ + QY  +N+
Sbjct: 77  VVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNK 136

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS 191
                 +++I+GGG  G+E+A   A+    K VTL+H+  R+L        +K  D  ++
Sbjct: 137 ----VENVVIIGGGYIGIEMAE--ALRERGKNVTLIHRSERIL--------NKLFDEEMN 182

Query: 192 KKVDVKLGQR-VNL------DSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTI 244
           + V+ +L +  +NL      DS+       + ++G   +AD   L TG    S+  KD+ 
Sbjct: 183 QIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSG 242

Query: 245 LKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG--------FLAQKHAQVAAK 296
           LK  L   G + V+E  +     NI+A GD+ +   I           + A K  ++A +
Sbjct: 243 LK--LGETGAIWVNEKFQTS-VPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGE 299

Query: 297 NL 298
           N+
Sbjct: 300 NI 301

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 23/271 (8%)

Query: 69  NHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA 128
           N   Y  + R V    +   + E +T        D +VIA G +  +P    +   +Y  
Sbjct: 106 NIDVYDGHARFVGPRTLRTGDGEEITG-------DQIVIAAGSRPYIPPAIADSGVRYHT 158

Query: 129 ENQKIKSA---RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT 185
               ++      S++IVGGG    E A          +VT+V++ ++LL  +     D+ 
Sbjct: 159 NEDIMRLPELPESLVIVGGGYIAAEFAH--VFSALGTRVTIVNRSTKLLRHLDEDISDRF 216

Query: 186 LDWLISKKVDVKLGQRVNLDSVSEGSD--TYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
            + +  KK D++LG+  N+ +V +  D  T     G T+ AD   + TG+    D L   
Sbjct: 217 TE-IAKKKWDIRLGR--NVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAE 273

Query: 244 ILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV--- 300
                +D DG + VDE  R    + ++A+GD++   ++K   +A   A+V   NL     
Sbjct: 274 AAGVEVDEDGRIKVDEYGRTSA-RGVWALGDVSSPYQLKH--VANAEARVVKHNLLHPND 330

Query: 301 LMVGERESKMATYWPHSAIAIVSLGRKDAVA 331
           L     +   +  + H  IA V L  ++A  
Sbjct: 331 LRKMPHDFVPSAVFTHPQIATVGLTEQEARE 361

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 73/327 (22%), Positives = 138/327 (42%), Gaps = 65/327 (19%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITW-------ASLRAMVEPSF-G 63
           K +++V+IG G+AG    + L       L    + ++IT           R ++     G
Sbjct: 2   KKQKLVIIGNGMAGHRTIEEL-------LESAPDLYDITVFGEEPRPNYNRILLSSVLAG 54

Query: 64  ERS----VINHTDY--------LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG- 110
           E++     +N  D+            +++    I+     V T  GR V YD L+IATG 
Sbjct: 55  EKTAEDISLNRNDWYEENGITLYTGEKVIQ---IDRANKVVTTDAGRTVSYDKLIIATGS 111

Query: 111 --HKDPVP-KTRTERLNQYQAEN-QKIKSA----RSILIVGGGPTGVELA-GEIAVDFPE 161
                P+P             ++ + +       +  +++GGG  G+E A G   +    
Sbjct: 112 YPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGME- 170

Query: 162 KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE------GSDTYL 215
             VT+VH    L+E    +  D+T   L+ +K++  LG +V L+  +E        +   
Sbjct: 171 --VTVVHIAPTLME----RQLDRTAGRLLRRKLE-DLGIKVLLEKNTEEIVGEDKVEGVR 223

Query: 216 TSTGDTIKADCHFLCTG-KPVGSDWLKDTILKDS-LDTDGMLMVDENLRVKGQKNIFAIG 273
            + G  I AD   +  G +P       D + K++ L  +  ++V++ ++     +I+A+G
Sbjct: 224 FADGTEIPADLVVMAVGIRP------NDELAKEAGLAVNRGIVVNDYMQTS-DPDIYAVG 276

Query: 274 DITDIREIKQGFLA--QKHAQVAAKNL 298
           +  + R    G +A   + A+V A +L
Sbjct: 277 ECAEHRGKVYGLVAPLYEQAKVLADHL 303

Length = 793

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 20/219 (9%)

Query: 91  EVLTAEGRRVV-YDYLVIATGHKD-----PVPKTRTERLNQYQAENQKIKSARSILIVGG 144
            V    G   +    ++IATG +      P        +    A N +     S++I+GG
Sbjct: 120 SVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEV-PESLVIIGG 178

Query: 145 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL 204
           G  GVE A  I       KVT++    R+L     +        L  K V +    +V  
Sbjct: 179 GVIGVEFA-SIFASL-GSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVKILTNTKVTA 236

Query: 205 DSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLR 262
              ++   TY    G+  T+  +   +  G+   ++ L    L   LD  G ++VDE +R
Sbjct: 237 VEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMR 296

Query: 263 VKGQKNIFAIGDITDIREIKQGFLAQK---HAQVAAKNL 298
                 I+AIGD+          LA        VAA+N+
Sbjct: 297 TNVP-GIYAIGDVIG-----GPMLAHVASHEGIVAAENI 329

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 45/235 (19%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATGHKDP-VPKTRTERLNQYQAENQKIKSA--------- 136
             +   +   G R+    +VIATG + P +P         +     ++ ++         
Sbjct: 116 FVDPNTVEVNGERIEAKNIVIATGSRVPPIPG-------VWLILGDRLLTSDDAFELDKL 168

Query: 137 -RSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWL 189
            +S+ ++GGG  G+EL       G         KVT+  +G R+L    P+   +    +
Sbjct: 169 PKSLAVIGGGVIGLELGQALSRLG--------VKVTVFERGDRILPLEDPEVSKQAQK-I 219

Query: 190 ISKKVDVKLGQRVNLDSVSEGSD---TYLTSTGD--TIKADCHFLCTG-KPVGSDWLKDT 243
           +SK+  +KLG +V   SV +  D     L   G   TI+AD   + TG +P  +D L   
Sbjct: 220 LSKEFKIKLGAKV--TSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN-TDGLGLE 276

Query: 244 ILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL 298
                LD  G  +VDE+ +      I+A GD+     +     A    ++AA+N 
Sbjct: 277 NTGIELDERGRPVVDEHTQ-TSVPGIYAAGDVNGKPPLLH--EAADEGRIAAENA 328

Length = 460

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 30/236 (12%)

Query: 89  ENEVLTAEGRRVV-YDYLVIATGHKDPVPK----------TRTERLNQYQAENQKIKSAR 137
              V    GR V      +IATG +  +P           T  E L    A ++  +S  
Sbjct: 115 PKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEAL----ALDRIPES-- 168

Query: 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVK 197
            + ++GGG  GVELA   A    E  VT++ +  RLL    P+      + L  + ++V 
Sbjct: 169 -LAVIGGGAIGVELAQAFARLGSE--VTILQRSDRLLPREEPEISAAVEEALAEEGIEVV 225

Query: 198 LGQRVNLDSVSEGS---DTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGM 254
              +V   SV  G              ++AD   + TG+   +D L        LD  G 
Sbjct: 226 TSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGG 285

Query: 255 LMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKM 310
           ++VDE LR      I+A GD+T    ++  ++A K   VAA+N     +G   +K+
Sbjct: 286 ILVDETLRTS-NPGIYAAGDVTG--GLQLEYVAAKEGVVAAEN----ALGGANAKL 334

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 70/335 (20%), Positives = 128/335 (38%), Gaps = 71/335 (21%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYFEITWA-------------SLRAM 57
            ++++IGG  AG   A   K L    ++T+ +  +   +++                  M
Sbjct: 1   MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI--VSFGACGLPYFVGGFFDDPNTM 58

Query: 58  VEPSFGERSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGHK 112
           +  +  E  + +  D      +V    ++     +      T       YD L+IATG +
Sbjct: 59  IART-PEEFIKSGIDVKTEHEVVK---VDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114

Query: 113 DPVPKTRTERLNQYQAEN----------QKIKSA------RSILIVGGGPTGVELAGEIA 156
             +P      +     EN            +K        ++I+I+G G  G+E   E A
Sbjct: 115 PIIPP-----IKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAV-EAA 168

Query: 157 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTL-----DWLISKKVDVKLGQRVNLDSVSEGS 211
                K V ++    R+L    P + DK +     + L    V++ L + V    + E  
Sbjct: 169 KHL-GKNVRIIQLEDRIL----PDSFDKEITDVMEEELRENGVELHLNEFV-KSLIGEDK 222

Query: 212 DTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFA 271
              + +     +AD   + TG    +++L+DT LK     +G ++VDE       +NI+A
Sbjct: 223 VEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLK--TLKNGAIIVDEYGETS-IENIYA 279

Query: 272 IGDITDIREI---KQGFL-----AQKHAQVAAKNL 298
            GD   I  I   K  ++     A K  ++  +NL
Sbjct: 280 AGDCATIYNIVSNKNVYVPLATTANKLGRMVGENL 314

Length = 444

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVK 197
            +++VGGG  G+E A          KVT+V +  RLL     +      + L    ++V 
Sbjct: 1   RVVVVGGGYIGLEFA-SALAKL-GSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVL 58

Query: 198 LGQRVN 203
           L   V 
Sbjct: 59  LNTTVE 64

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 45/226 (19%)

Query: 77  GRIV----ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQK 132
           GRI+     SP       E  T E   ++ + L+IATG + PV       L     + + 
Sbjct: 114 GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSR-PVE------LPGLPFDGEY 166

Query: 133 IKSA----------RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG 182
           + S+          +S++IVGGG  G+E A  +A DF   +VT+V    R+L        
Sbjct: 167 VISSDEALSLETLPKSLVIVGGGVIGLEWASMLA-DF-GVEVTVVEAADRIL-----PTE 219

Query: 183 DKTL-----DWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD----TIKADCHFLCTG- 232
           D  L       L    V V  G +V   ++ +     + +  +    T++AD   +  G 
Sbjct: 220 DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR 279

Query: 233 KPVGSDW-LKDTILKDSLDTDG-MLMVDENLRVKGQKNIFAIGDIT 276
           +P      L++T     +D +G  + +D+  + K +++I+AIGD+ 
Sbjct: 280 RPNTEGIGLENT----DIDVEGGFIQIDDFCQTK-ERHIYAIGDVI 320

Length = 472

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 51/227 (22%), Positives = 87/227 (38%), Gaps = 41/227 (18%)

Query: 88  TENEVLTAEGRRVVYDYLVIATG--HKDPVPKTRTERLNQ---YQAENQKIKSARSILIV 142
           T+     A         ++IATG   +        E   +   Y A        + ++++
Sbjct: 97  TDKGTYEA-------KAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVI 149

Query: 143 GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-----KVDVK 197
           GGG + VE A  ++     KKVTLVH+              +  + L+ +     K++V 
Sbjct: 150 GGGDSAVEEALYLSKIA--KKVTLVHRRDEF----------RAEEILVERLKKNVKIEVL 197

Query: 198 LGQRVN---LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGM 254
               V     D V       +      +  D  F+  G    ++ LK   +   LD +G 
Sbjct: 198 TNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV---LDENGY 254

Query: 255 LMVDENLR--VKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK 299
           ++VDE +   V G   IFA GD+ D +  +Q   A     +AA + +
Sbjct: 255 IVVDEEMETSVPG---IFAAGDVAD-KNGRQIATAAGDGAIAALSAE 297

Length = 305

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 50.9 bits (123), Expect = 6e-07
 Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 38/205 (18%)

Query: 91  EVLTAEGRRVVY--DYLVIATGHKDPVPKTRTERLNQYQAENQKI----------KSARS 138
           EV   +G       D +VIATG       +R  R      ++ +I             RS
Sbjct: 125 EVECPDGEVETLTADKIVIATG-------SRPYRPPDVDFDHPRIYDSDSILSLDHLPRS 177

Query: 139 ILIVGGGPTGVELAGEIA---VDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD 195
           ++I G G  G E A   A   V     KVTL++   RLL F+  +  D     L    V 
Sbjct: 178 LIIYGAGVIGCEYASIFAALGV-----KVTLINTRDRLLSFLDDEISDALSYHLRDSGVT 232

Query: 196 VKLGQRVNLDSVSEGSD---TYLTSTGDTIKADCHFLCTGKPVGSDWLK-DTI-LKDSLD 250
           ++  + V  + V  G D    +L S G  IKADC     G+   +D L  +   L+   D
Sbjct: 233 IRHNEEV--EKVEGGDDGVIVHLKS-GKKIKADCLLYANGRTGNTDGLNLENAGLE--AD 287

Query: 251 TDGMLMVDENLRVKGQKNIFAIGDI 275
           + G L V+EN +     +I+A+GD+
Sbjct: 288 SRGQLKVNENYQTA-VPHIYAVGDV 311

Length = 461

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 48/250 (19%)

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HKDPVPKT--------RT-E 121
                ++    I+  + +V+T  GR + YD L++ATG      P+P          RT E
Sbjct: 72  YTGETVIQ---IDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIE 128

Query: 122 RLNQYQAENQKIKSARSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIG 178
            L+   A  Q+ K A    ++GGG  G+E A     + +D     V+++H    L+    
Sbjct: 129 DLDAIMAMAQRFKKA---AVIGGGLLGLEAAVGLQNLGMD-----VSVIHHAPGLMA--- 177

Query: 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS------DTYLTSTGDTIKADCHFLCTG 232
            K  D+T   L+ ++++ + G    L+  +         D      G +++AD   +  G
Sbjct: 178 -KQLDQTAGRLLQRELE-QKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAG 235

Query: 233 -KPVGSDWLKDTILKDS-LDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQ-- 288
            +P       D +   + +  +  ++V+++++     +I+A+G+  +      G +A   
Sbjct: 236 IRP------NDELAVSAGIKVNRGIIVNDSMQTS-DPDIYAVGECAEHNGRVYGLVAPLY 288

Query: 289 KHAQVAAKNL 298
           + A+V A ++
Sbjct: 289 EQAKVLADHI 298

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 137 RSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLI 190
            S++IVGGG    E A      G         +VT+V++  RLL  +     ++  + L 
Sbjct: 167 ESLVIVGGGFIAAEFAHVFSALG--------VRVTVVNRSGRLLRHLDDDISERFTE-LA 217

Query: 191 SKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLD 250
           SK+ DV+LG+ V   S      T     G T++AD   + TG+    D L        +D
Sbjct: 218 SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVD 277

Query: 251 TDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL 298
            DG ++VDE  R    + +FA+GD++   ++K   +A   A+V   NL
Sbjct: 278 EDGRVVVDEYQRT-SAEGVFALGDVSSPYQLKH--VANHEARVVQHNL 322

Length = 451

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 36/205 (17%)

Query: 86  NITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQAENQKI 133
           N   NE          YD L+++ G                     T+ ++Q+   NQ  
Sbjct: 95  NRKTNEQFEES-----YDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQ-- 147

Query: 134 KSARSILIVGGGPTGVELAGEI---AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLI 190
                 L+VG G   +E+   +    +       TL+H+  ++ + +        LD L 
Sbjct: 148 --VDKALVVGAGYISLEVLENLYERGLH-----PTLIHRSDKINKLMDADMNQPILDELD 200

Query: 191 SKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLD 250
            +++  +L + +  D+++    T+   +G     D      G    S +++ + +K  LD
Sbjct: 201 KREIPYRLNEEI--DAINGNEVTF--KSGKVEHYDMIIEGVGTHPNSKFIESSNIK--LD 254

Query: 251 TDGMLMVDENLRVKGQKNIFAIGDI 275
             G + V++        NI+AIGDI
Sbjct: 255 DKGFIPVNDKFETN-VPNIYAIGDI 278

Length = 438

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 37/167 (22%)

Query: 15  RVVVIGGGVAG-----SLVAKSLQFSADVTLI--DPKE---------YFEITWASLRAMV 58
           R+ +IG G+ G      L+ K+   + D+T+   +P+          YF    A   ++V
Sbjct: 5   RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLV 64

Query: 59  EPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT 118
              F E+  I     LV  R +    IN  E  + ++ GR V YD L++ATG    +P  
Sbjct: 65  REGFYEKHGIK---VLVGERAIT---INRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPI 118

Query: 119 -----------RT-ERLNQYQAENQKIKSARSILIVGGGPTGVELAG 153
                      RT E LN  +A  ++ K      +VGGG  G+E AG
Sbjct: 119 KGSETQDCFVYRTIEDLNAIEACARRSKRG---AVVGGGLLGLEAAG 162

Length = 847

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 6/191 (3%)

Query: 90  NEV-LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKS-ARSILIVGGGPT 147
           N V + A G+    + ++IA G + P P      L     E   + +  +SILI GGG  
Sbjct: 118 NTVEVLASGKTYTAEKILIAVGGRPPKPALPGHELGITSNEAFHLPTLPKSILIAGGGYI 177

Query: 148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRV-NLDS 206
            VE AG         + TL+++G  +L              L  + + +     + ++  
Sbjct: 178 AVEFAGIFR--GLGVQTTLIYRGKEILRGFDDDMRRGLAAALEERGIRILPEDSITSISK 235

Query: 207 VSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQ 266
             +G      S  + I AD     TG+   ++ L        L+  G + VDE  R    
Sbjct: 236 DDDGRLKATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTS-T 294

Query: 267 KNIFAIGDITD 277
            +I+A+GD+TD
Sbjct: 295 PSIYAVGDVTD 305

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 10/183 (5%)

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI 155
           +G+ +    ++IA G+K   P  + +       +  KIK A+ I I G G   VEL    
Sbjct: 197 DGQVIEGKNILIAVGNKPIFPDVKGKEFTISSDDFFKIKEAKRIGIAGSGYIAVELIN-- 254

Query: 156 AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV----SEGS 211
            V+    +  +  +G+RLL        ++  + +  KK ++ +    N++ +     +  
Sbjct: 255 VVNRLGAESYIFARGNRLLRKFDETIINELENDM--KKNNINIITHANVEEIEKVKEKNL 312

Query: 212 DTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFA 271
             YL+        D    C G+   ++ L    L       G + VD+N R    K+I+A
Sbjct: 313 TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNI-KTPKGYIKVDDNQRTS-VKHIYA 370

Query: 272 IGD 274
           +GD
Sbjct: 371 VGD 373

Length = 561

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 8/184 (4%)

Query: 99  RVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSA-RSILIVGGGPTGVELAGEI-A 156
           R+  +++++ATG    +             E   +    R +L VGGG   VE AG   A
Sbjct: 149 RLQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNA 208

Query: 157 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQ---RVNLDSVSEGSDT 213
                 KVTL ++ + +L         +    L +  +++   +   +V L++  +GS  
Sbjct: 209 YKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNA--DGSKH 266

Query: 214 YLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIG 273
               +G T+  D   +  G+   +  L+   +   L   G + VDE  R     NI+AIG
Sbjct: 267 VTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTN-VPNIYAIG 325

Query: 274 DITD 277
           D+TD
Sbjct: 326 DVTD 329

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 38/167 (22%)

Query: 8   QSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVE---PSFG 63
              G  K+V VIG G AG   A  L +    VT+ + +E       +   +V+   P F 
Sbjct: 534 AGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE-------NAGGVVKNIIPQF- 585

Query: 64  ER---SVINH-----TDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG-HKDP 114
            R    +I H       + V      SP + + +   L  EG    YDY+V+A G  K+ 
Sbjct: 586 -RIPAELIQHDIEFVKAHGVKFEFGCSPDLTVEQ---LKNEG----YDYVVVAIGADKNG 637

Query: 115 VPKTRTER---------LNQYQAENQKIKSARSILIVGGGPTGVELA 152
             K              L +Y+ +   +K  + +++VGGG T ++ A
Sbjct: 638 GLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAA 684

Length = 1019

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 8   QSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGERS 66
           +     KRVVV+GGG  G  +A +L +   +VT+++ ++        L    +       
Sbjct: 137 ELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL------LARADDEISAALL 190

Query: 67  VINHTDYLVNGRIVASPAINITEN----EVLTAEGRRVVYDYLVIATGHK 112
                  L    ++    +    +    EV   +G  +  D +++A G +
Sbjct: 191 EKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRR 240

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 14/147 (9%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
           + + +VG G   VE AG    +  +       L  +G   L    P   +  ++ +  K 
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGLGSE-----THLFVRGDAPLRGFDPDIRETLVEEMEKKG 222

Query: 194 VDVKLGQRV-NLDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDW-LKDTILKDSLD 250
           + +        ++  ++GS T     G+T+  DC     G +P      L++  +K  L+
Sbjct: 223 IRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVK--LN 280

Query: 251 TDGMLMVDENLRVKGQKNIFAIGDITD 277
             G ++VDE         I+A+GD+T 
Sbjct: 281 EKGYIIVDEYQNTN-VPGIYAVGDVTG 306

Length = 450

>gnl|CDD|222002 pfam13241, NAD_binding_7, Putative NAD(P)-binding

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 12 KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFE---ITWA 52
          K KRV+V+GGG VA   +   L+  A VT++ P+       +   
Sbjct: 6  KGKRVLVVGGGEVALRKIRALLEAGAKVTVVSPEILEAEGLVRLI 50

This domain is found in fungi, plants, archaea and bacteria. Length = 104

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 4   QRQQQSEGKNKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKEYFEITWASLRA 56
           +      G   R+ V+GGG AG  +A +L+           VTLI          A +R 
Sbjct: 137 ESADAPPGTK-RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRR 195

Query: 57  MVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDP 114
           +V      R +  H           +P     +  ++ A+GR +  D ++ ATG + P
Sbjct: 196 LVLRLLARRGIEVHEG---------APVTRGPDGALILADGRTLPADAILWATGARAP 244

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 42/184 (22%), Positives = 65/184 (35%), Gaps = 46/184 (25%)

Query: 137 RSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLI 190
             ++I+GGG  G+E A      G         +VT++ +G RLL            + L 
Sbjct: 172 EHLVIIGGGYIGLEFAQMFRRFG--------SEVTVIERGPRLLPREDEDVAAAVREILE 223

Query: 191 SKKVDVKLGQRV-NLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILKD 247
            + +DV+L      ++   +G    L   G    I      +  G+   +D L       
Sbjct: 224 REGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDL------- 276

Query: 248 SL-------DTDGMLMVDENLR--VKGQKNIFAIGDITDIREIKQGF----LAQKHAQVA 294
            L       D  G + VD+ LR    G   I+A GD                A   A++ 
Sbjct: 277 GLEAAGVETDARGYIKVDDQLRTTNPG---IYAAGD------CNGRGAFTHTAYNDARIV 327

Query: 295 AKNL 298
           A NL
Sbjct: 328 AANL 331

Length = 463

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 72/305 (23%), Positives = 112/305 (36%), Gaps = 61/305 (20%)

Query: 8   QSEGKNKRVVVIGGGVAGSLVAKSLQFSA-DVTLIDPKEYFEITWASLRAMVEPSFG-ER 65
           Q +    +V VIG G AG      L  +   VT+ + KE        +   + P F    
Sbjct: 532 QGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE----KPGGVVKNIIPEFRISA 587

Query: 66  SVINHTDYLVNGRIV-----ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT 120
             I     LV    V      SP + + E   L  +G    Y Y+++A G     P    
Sbjct: 588 ESIQKDIELVKFHGVEFKYGCSPDLTVAE---LKNQG----YKYVILAIGAWKHGPLRLE 640

Query: 121 ----------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPE-KKVTLVHK 169
                     E L  ++         + +++VGGG T ++ A   A+  P  +KVT+V++
Sbjct: 641 GGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAA-RAALRVPGVEKVTVVYR 699

Query: 170 GSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT------------- 216
             R   ++   A  + L+  +   VD K      L S     D  LT             
Sbjct: 700 --RTKRYM--PASREELEEALEDGVDFK-----ELLSPESFEDGTLTCEVMKLGEPDASG 750

Query: 217 -----STGDT--IKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNI 269
                 TG+T  + AD      G+ V +D L+       LD  G  +V++        N+
Sbjct: 751 RRRPVGTGETVDLPADTVIAAVGEQVDTDLLQK--NGIPLDEYGWPVVNQATGETNITNV 808

Query: 270 FAIGD 274
           F IGD
Sbjct: 809 FVIGD 813

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 61/154 (39%)

Query: 17  VVIGGGVAGSLVAKSLQFSA-----DVTLIDPKE------YF--------------EIT- 50
            +IG G  G  V + L   A     D+T+ DP        +               +++ 
Sbjct: 1   AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVWRTDQPPQLLLNTPAAQMSL 60

Query: 51  ----------WASLRAMVEPSFGE-----RSVINHTDYL--------------VNGRIVA 81
                     W   +   E          R++     YL              V  R+  
Sbjct: 61  FPDDPPSFLEWLEAQGEEEAGLDPDDFPPRALFGE--YLRWRFSELLARAPAGVTVRVHR 118

Query: 82  SPAINITEN----EVLTAEGRRVVYDYLVIATGH 111
           +  +++        V  A+G  +  D +V+ATGH
Sbjct: 119 AEVVDLRPRGGGYTVTLADGATLRADAVVLATGH 152

Length = 153

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 41/214 (19%), Positives = 82/214 (38%), Gaps = 27/214 (12%)

Query: 76  NGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK----------TRTERLNQ 125
             R      + +  ++      R +  D  +IATG    +P           T TE L  
Sbjct: 128 YARFKDGNTLVVRLHD---GGERVLAADRCLIATGSTPTIPPIPGLMDTPYWTSTEALFS 184

Query: 126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT 185
            +          S+ ++G      E+A   A      +VT++ + S LL    P  G+  
Sbjct: 185 DEL-------PASLTVIGSSVVAAEIAQAYAR--LGSRVTILAR-STLLFREDPLLGETL 234

Query: 186 LDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD-TIKADCHFLCTGKPVGSDWLKDTI 244
                 +K  +++        V    + ++ +TG   ++A+   + TG+   +  L    
Sbjct: 235 TA--CFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEA 292

Query: 245 LKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI 278
           +  + DT G ++V+  +      +I+A GD +D+
Sbjct: 293 VGVTTDTSGAIVVNPAMETS-APDIYAAGDCSDL 325

Length = 479

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLID 42
           +    K +   +IGGG+AG+ +A +L      VTL +
Sbjct: 254 RPGSPKARDAAIIGGGIAGAALALALARRGWQVTLYE 290

Length = 662

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 28/258 (10%)

Query: 88  TENEVLTAEGRRVVYDYLVIATGHKDPVPKT------RTERLNQYQAENQKIKSARSILI 141
           T++  +   GR     +++IATG K   P+        T+    +  E       + ++I
Sbjct: 116 TKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEEL----PKRVVI 171

Query: 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDV-KLGQ 200
           VG G   VELAG +       +  LV +  R+L        +   +    + ++V KL +
Sbjct: 172 VGAGYIAVELAGVLHG--LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSK 229

Query: 201 RVNLDSVSEGSDTYLTSTGDTI-KADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE 259
            V ++   EG        G +I   D      G+   +  L    +   L+  G ++VDE
Sbjct: 230 PVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDE 289

Query: 260 NLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL-KVLMVGERESKM------AT 312
             +      I+A+GD+    E+    +A      A + L + L  G+ + K+        
Sbjct: 290 -YQNTNVPGIYALGDVVGKVELTPVAIA------AGRKLSERLFNGKTDDKLDYNNVPTV 342

Query: 313 YWPHSAIAIVSLGRKDAV 330
            + H  I  + L  K+A+
Sbjct: 343 VFSHPPIGTIGLTEKEAI 360

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PLN02507	499	glutathione reductase	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PLN02546	558	glutathione reductase	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.97
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.97
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.97
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.97
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.97
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.96
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.96
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.96
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.96
PRK13984	604	putative oxidoreductase; Provisional	99.96
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.95
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.95
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.95
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.94
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.94
PLN02852	491	ferredoxin-NADP+ reductase	99.93
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.92
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.92
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.91
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.9
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.81
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.81
KOG2755	334	consensus Oxidoreductase [General function predict	99.8
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.8
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.78
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.77
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.73
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.69
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.64
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.63
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.63
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.6
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.56
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.54
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.47
PTZ00188	506	adrenodoxin reductase; Provisional	99.46
COG2081	408	Predicted flavoproteins [General function predicti	99.46
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.25
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.21
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.1
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.01
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.0
COG0579	429	Predicted dehydrogenase [General function predicti	99.0
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.98
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.97
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.96
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.94
PRK10157	428	putative oxidoreductase FixC; Provisional	98.94
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.93
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.93
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.92
PRK06847	375	hypothetical protein; Provisional	98.92
PRK10015	429	oxidoreductase; Provisional	98.91
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.91
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.91
PRK08163	396	salicylate hydroxylase; Provisional	98.89
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.83
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.82
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.82
PLN02463	447	lycopene beta cyclase	98.8
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.8
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.8
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.79
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.79
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.79
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.79
PRK07190	487	hypothetical protein; Provisional	98.79
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.78
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.78
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.78
PRK09897	534	hypothetical protein; Provisional	98.77
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.76
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.75
PRK08013	400	oxidoreductase; Provisional	98.75
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.74
PRK05257	494	malate:quinone oxidoreductase; Validated	98.73
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.72
PRK07588	391	hypothetical protein; Provisional	98.71
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.71
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.7
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.69
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.69
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.68
PRK09126	392	hypothetical protein; Provisional	98.68
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.67
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.67
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.67
PRK06996	398	hypothetical protein; Provisional	98.66
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.66
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.65
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.65
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.65
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.65
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.65
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.65
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.64
PRK07233	434	hypothetical protein; Provisional	98.63
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.62
PRK05868	372	hypothetical protein; Validated	98.62
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.61
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.61
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.6
PRK06184	502	hypothetical protein; Provisional	98.6
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.59
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.59
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.59
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.59
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.59
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.58
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.58
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.57
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.57
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.57
PRK08244	493	hypothetical protein; Provisional	98.56
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.55
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.54
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.54
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.53
PLN02268	435	probable polyamine oxidase	98.52
PRK07045	388	putative monooxygenase; Reviewed	98.52
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.52
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.51
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.5
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.5
PRK08274	466	tricarballylate dehydrogenase; Validated	98.5
PRK06475	400	salicylate hydroxylase; Provisional	98.49
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.47
PRK06175	433	L-aspartate oxidase; Provisional	98.47
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.47
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.46
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.45
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.44
PRK06185	407	hypothetical protein; Provisional	98.44
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.44
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.42
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.39
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.39
PLN02612	567	phytoene desaturase	98.39
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.37
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.37
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.37
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.36
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.36
PRK07236	386	hypothetical protein; Provisional	98.36
PLN02697	529	lycopene epsilon cyclase	98.35
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.33
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.32
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.32
PRK07804	541	L-aspartate oxidase; Provisional	98.32
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.31
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.3
PRK07538	413	hypothetical protein; Provisional	98.3
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.28
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.28
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.26
PLN02487	569	zeta-carotene desaturase	98.25
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.24
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.23
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.23
PRK08401	466	L-aspartate oxidase; Provisional	98.22
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.2
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.2
KOG2853	509	consensus Possible oxidoreductase [General functio	98.2
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.19
PRK06834	488	hypothetical protein; Provisional	98.19
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.19
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.18
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.17
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.17
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.16
PRK12831	464	putative oxidoreductase; Provisional	98.16
PRK10262	321	thioredoxin reductase; Provisional	98.15
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.15
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.14
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.14
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.14
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.13
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.13
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.12
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.12
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.11
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.11
PLN02852	491	ferredoxin-NADP+ reductase	98.11
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.1
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.07
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.05
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.04
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.97
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.97
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.96
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.94
PRK07208	479	hypothetical protein; Provisional	97.93
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.93
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.92
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.92
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.92
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.92
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.91
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.91
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.91
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.91
PRK09897	534	hypothetical protein; Provisional	97.9
PRK06753	373	hypothetical protein; Provisional	97.89
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.89
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.87
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.86
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.86
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.85
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.85
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.85
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.85
COG3349	485	Uncharacterized conserved protein [Function unknow	97.84
PRK11445	351	putative oxidoreductase; Provisional	97.83
PLN02661	357	Putative thiazole synthesis	97.83
PRK07236	386	hypothetical protein; Provisional	97.83
PRK06116	450	glutathione reductase; Validated	97.83
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.82
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.81
PLN02576	496	protoporphyrinogen oxidase	97.81
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.81
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.78
PRK07846	451	mycothione reductase; Reviewed	97.77
PRK06753	373	hypothetical protein; Provisional	97.77
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.77
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.76
PLN02568	539	polyamine oxidase	97.76
PRK06126	545	hypothetical protein; Provisional	97.76
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.74
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.74
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.74
PLN02985	514	squalene monooxygenase	97.73
PTZ00367	567	squalene epoxidase; Provisional	97.72
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.72
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.71
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.7
PRK06370	463	mercuric reductase; Validated	97.7
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.7
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.69
PLN02697	529	lycopene epsilon cyclase	97.68
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.66
TIGR02053	463	MerA mercuric reductase. This model represents the	97.66
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.65
PLN02661	357	Putative thiazole synthesis	97.65
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.65
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.65
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.64
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.64
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.64
PRK14694	468	putative mercuric reductase; Provisional	97.63
PRK06834	488	hypothetical protein; Provisional	97.62
PTZ00188	506	adrenodoxin reductase; Provisional	97.6
PRK07121	492	hypothetical protein; Validated	97.6
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.6
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.59
PLN02507	499	glutathione reductase	97.59
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.59
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.58
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.58
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.58
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.57
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.57
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.55
PRK08294	634	phenol 2-monooxygenase; Provisional	97.55
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.54
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.52
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.51
PRK07395	553	L-aspartate oxidase; Provisional	97.51
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.51
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.5
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.48
PTZ00052	499	thioredoxin reductase; Provisional	97.46
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.46
PLN02529	738	lysine-specific histone demethylase 1	97.46
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.46
PLN02676	487	polyamine oxidase	97.45
PRK08071	510	L-aspartate oxidase; Provisional	97.44
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.43
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.43
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.43
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.42
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.4
PRK11445	351	putative oxidoreductase; Provisional	97.37
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.36
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.36
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.33
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.33
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.31
PRK06126	545	hypothetical protein; Provisional	97.31
PRK13984	604	putative oxidoreductase; Provisional	97.31
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.31
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.3
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.3
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.3
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.3
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.29
PTZ00058	561	glutathione reductase; Provisional	97.28
PRK14727	479	putative mercuric reductase; Provisional	97.28
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.27
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.27
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.27
PRK13748	561	putative mercuric reductase; Provisional	97.27
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.27
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.25
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.25
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.25
PRK09077	536	L-aspartate oxidase; Provisional	97.25
PRK02106	560	choline dehydrogenase; Validated	97.25
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.22
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.21
PRK08275	554	putative oxidoreductase; Provisional	97.21
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.21
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.19
PRK12839	572	hypothetical protein; Provisional	97.19
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.18
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.14
PLN02815	594	L-aspartate oxidase	97.13
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.13
KOG2755	334	consensus Oxidoreductase [General function predict	97.12
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.12
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.11
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.11
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.1
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.1
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.09
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.09
PRK07512	513	L-aspartate oxidase; Provisional	97.08
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.08
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.07
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.05
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.04
PLN02785	587	Protein HOTHEAD	97.01
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.99
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	96.98
PLN03000	881	amine oxidase	96.97
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.96
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.94
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.93
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.92
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.92
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.9
PLN02546	558	glutathione reductase	96.89
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	96.89
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.82
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.82
PLN02976	1713	amine oxidase	96.77
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.76
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.72
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.72
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.71
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.61
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	96.49
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.48
COG3573	552	Predicted oxidoreductase [General function predict	96.46
PRK08294	634	phenol 2-monooxygenase; Provisional	96.42
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.38
PLN02985	514	squalene monooxygenase	96.38
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.34
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.33
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.27
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.23
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	96.13
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.99
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	95.98
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.98
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.96
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	95.84
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	95.82
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.82
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.73
PRK07121	492	hypothetical protein; Validated	95.73
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	95.59
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	95.55
PTZ00367	567	squalene epoxidase; Provisional	95.53
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.51
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	95.5
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.39
KOG2852	380	consensus Possible oxidoreductase [General functio	95.38
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	95.24
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.22
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.03
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	95.02
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.89
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.85
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.83
PRK05868	372	hypothetical protein; Validated	94.8
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	94.72
PRK06184	502	hypothetical protein; Provisional	94.69
PRK06475	400	salicylate hydroxylase; Provisional	94.67
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	94.66
PRK06847	375	hypothetical protein; Provisional	94.62
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.61
PRK08163	396	salicylate hydroxylase; Provisional	94.49
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	94.48
PRK08244	493	hypothetical protein; Provisional	94.45
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.4
PRK08275	554	putative oxidoreductase; Provisional	94.33
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	94.29
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	94.2
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.18
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	94.18
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.04
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.99
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	93.94
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	93.92
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.87
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.78
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	93.77
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	93.73
PRK11728	393	hydroxyglutarate oxidase; Provisional	93.69
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.68
PRK07538	413	hypothetical protein; Provisional	93.67
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.62
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	93.61
COG2081	408	Predicted flavoproteins [General function predicti	93.57
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.53
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	93.51
PRK09126	392	hypothetical protein; Provisional	93.51
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.46
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.42
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.39
PRK11883	451	protoporphyrinogen oxidase; Reviewed	93.35
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	93.35
PRK06185	407	hypothetical protein; Provisional	93.28
PRK07395	553	L-aspartate oxidase; Provisional	93.26
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.25
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	93.24
PRK08013	400	oxidoreductase; Provisional	93.23
PRK07588	391	hypothetical protein; Provisional	93.2
PRK07045	388	putative monooxygenase; Reviewed	93.14
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.05
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	92.98
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	92.94
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	92.89
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.85
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	92.83
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	92.82
PRK07190	487	hypothetical protein; Provisional	92.81
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	92.79
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	92.72
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.67

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=3e-55  Score=406.79  Aligned_cols=349  Identities=24%  Similarity=0.315  Sum_probs=274.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc--------cc-------ccCC-----------ccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL--------RA-------MVEP-----------SFG   63 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~--------~~-------~~~~-----------~~~   63 (369)
                      ...||+||||+||||..||.+++ .|.+|+|||++..+|..+...        ..       ....           .+.
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id   81 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID   81 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence            35799999999999999999986 488899999996565332111        00       0000           011


Q ss_pred             ccceecccc------------cc--ccceEEEeeeeeeecceEEecC--CeEEeccEEEEccCCCCCCCC---ChHHHHH
Q 046865           64 ERSVINHTD------------YL--VNGRIVASPAINITENEVLTAE--GRRVVYDYLVIATGHKDPVPK---TRTERLN  124 (369)
Q Consensus        64 ~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~v~~~~--g~~~~~d~lviAtG~~~~~p~---~~~~~~~  124 (369)
                      .......++            ++  .+++++.+++.++++++|...+  .+++++++++||||++|..|+   ++...+.
T Consensus        82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~  161 (454)
T COG1249          82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARIL  161 (454)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEE
Confidence            111111110            11  2689999999999999887765  489999999999999988775   3333333


Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      +..........|++++|||||++|+|+|+.++  ..|.+||++++.+++||.+|+++++.+.+.|++.|+++++++.++.
T Consensus       162 ~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~--~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~  239 (454)
T COG1249         162 DSSDALFLLELPKSLVIVGGGYIGLEFASVFA--ALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA  239 (454)
T ss_pred             echhhcccccCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEE
Confidence            34443344478999999999999999999998  4699999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc
Q 046865          205 DSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK  282 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~  282 (369)
                      ++..++.+.+.+++|+  ++++|.+++|+|++||++.|..+.++++++++|+|.||.++|| +.|||||+|||++.+.  
T Consensus       240 ~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~--  316 (454)
T COG1249         240 VEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPM--  316 (454)
T ss_pred             EEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcc--
Confidence            8876655778887776  7999999999999999998888888889999999999955555 7999999999998766  


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhCCCcccccccc-----CCCcEEEEeecCCCce--------EEcCccc-----ccccccc
Q 046865          283 QGFLAQKHAQVAAKNLKVLMVGERESKMATYW-----PHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVPG  344 (369)
Q Consensus       283 ~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~~  344 (369)
                      ++|.|.+||++||+||+.   +......+...     .+|+++.||+++.++.        ..+++..     ..+...|
T Consensus       317 Lah~A~~eg~iaa~~i~g---~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G  393 (454)
T COG1249         317 LAHVAMAEGRIAAENIAG---GKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDG  393 (454)
T ss_pred             cHhHHHHHHHHHHHHHhC---CCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCCce
Confidence            789999999999999984   11111111222     3699999999877763        3444432     4567889


Q ss_pred             eecccccchHHHHHHcCCCCCccCC
Q 046865          345 LIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       345 ~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      |+|+  ++++++++|||+|++|.||
T Consensus       394 ~~Kl--v~d~~t~~IlGahivg~~A  416 (454)
T COG1249         394 FVKL--VVDKETGRILGAHIVGPGA  416 (454)
T ss_pred             EEEE--EEECCCCeEEEEEEECCCH
Confidence            9999  9999999999999999986

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=1.5e-50  Score=366.10  Aligned_cols=328  Identities=30%  Similarity=0.390  Sum_probs=256.2

Q ss_pred             CcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcccccceecccccc---ccceEEEeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL---VNGRIVASPAI   85 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   85 (369)
                      ++++|||||||++|+.+|..|.+   +.+|+|||+++++.+.+.........-.......++.+.+   .+++|++++++
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~   81 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT   81 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence            46899999999999999999964   4899999999998766443322222111122233333333   25899999999


Q ss_pred             eeec--ceEEecCCeEEeccEEEEccCCCCCCCCCh--------HHHHHHHHHHH-------HHHh------cCCeEEEE
Q 046865           86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR--------TERLNQYQAEN-------QKIK------SARSILIV  142 (369)
Q Consensus        86 ~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~--------~~~~~~~~~~~-------~~~~------~~~~v~vv  142 (369)
                      .+|.  ++|.+.+++.+.||+||+|+|+.+..++++        ...+.+..++.       +...      ...+++|+
T Consensus        82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~Iv  161 (405)
T COG1252          82 DIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIV  161 (405)
T ss_pred             EEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEE
Confidence            9985  488888878899999999999996654432        11122221111       1111      22479999


Q ss_pred             cCChhHHHHHHHHhhhCC-----------CCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC
Q 046865          143 GGGPTGVELAGEIAVDFP-----------EKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS  211 (369)
Q Consensus       143 G~G~~g~e~a~~l~~~~~-----------~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  211 (369)
                      |||++|+|+|.+|.++.+           ..+|+|+++++++||.+++++++++++.|+++||++++++.|++++.+.  
T Consensus       162 GgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~--  239 (405)
T COG1252         162 GGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG--  239 (405)
T ss_pred             CCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc--
Confidence            999999999999987421           2499999999999999999999999999999999999999999997543  


Q ss_pred             eEEEcCCCc-EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc----cchhHH
Q 046865          212 DTYLTSTGD-TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE----IKQGFL  286 (369)
Q Consensus       212 ~~v~~~~g~-~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~----~~~~~~  286 (369)
                        +++++|+ +|+++++|||+|.+++. ++... .+.+.|..|++.||++||+.++|||||+|||+..+.    |+.++.
T Consensus       240 --v~~~~g~~~I~~~tvvWaaGv~a~~-~~~~l-~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~  315 (405)
T COG1252         240 --VTLKDGEEEIPADTVVWAAGVRASP-LLKDL-SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQA  315 (405)
T ss_pred             --EEEccCCeeEecCEEEEcCCCcCCh-hhhhc-ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHH
Confidence              6777777 49999999999999865 44431 234678889999999999999999999999997754    678999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCccccccccCCCcEEEEeecCCCceEEcCcccccccccceecc
Q 046865          287 AQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKS  348 (369)
Q Consensus       287 A~~~g~~~a~~i~~~~~g~~~~~~~~~~~~~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k~  348 (369)
                      |++||+++|+||.+.+.|++   +.+|.+.....++++|...|++...+..+.|...+++|.
T Consensus       316 A~Qqg~~~a~ni~~~l~g~~---l~~f~y~~~Gtl~~lG~~~av~~~g~~~l~G~~a~~~k~  374 (405)
T COG1252         316 AHQQGEYAAKNIKARLKGKP---LKPFKYKDKGTLASLGDFSAVADLGGVKLKGFLAWLLKR  374 (405)
T ss_pred             HHHHHHHHHHHHHHHhcCCC---CCCCcccceEEEEEccCCceeEEecceeeccHHHHHHHH
Confidence            99999999999999999965   456666678899999999999998766788887777663

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=1.5e-49  Score=379.53  Aligned_cols=349  Identities=22%  Similarity=0.264  Sum_probs=262.7

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc---------------------cc----CCccc
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---------------------MV----EPSFG   63 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~---------------------~~----~~~~~   63 (369)
                      ...+|||+|||||+||++||..|+ .|++|+|||+++.+|..+.....                     +.    .....
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT   81 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence            345799999999999999999986 59999999998766654321100                     00    00000


Q ss_pred             ccceecc------------ccc--cccceEEEeeeeeeecceE--EecCCe--EEeccEEEEccCCCCCCCCCh---HHH
Q 046865           64 ERSVINH------------TDY--LVNGRIVASPAINITENEV--LTAEGR--RVVYDYLVIATGHKDPVPKTR---TER  122 (369)
Q Consensus        64 ~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v--~~~~g~--~~~~d~lviAtG~~~~~p~~~---~~~  122 (369)
                      ...+..+            ..+  ..+++++.+++.+++.+++  ...++.  .+.||+||||||+.|..|+..   ...
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~  161 (461)
T PRK05249         82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPR  161 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCe
Confidence            0000000            001  1257888999888887754  334553  799999999999998877532   222


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCcee
Q 046865          123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      +.+..........+++++|+|+|++|+|+|..|++  .+.+|+++++.+++++.+++++.+.+.+.++++||++++++.+
T Consensus       162 v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v  239 (461)
T PRK05249        162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEV  239 (461)
T ss_pred             EEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEE
Confidence            22233333333568999999999999999999984  4999999999999999999999999999999999999999999


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK  282 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~  282 (369)
                      ++++.+++.+.+++.+|+++++|.+++|+|++||++.+.....++.++++|++.||+++|| +.|||||+|||++.+.  
T Consensus       240 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~--  316 (461)
T PRK05249        240 EKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPS--  316 (461)
T ss_pred             EEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcc--
Confidence            9987655556677778889999999999999999987655555667888999999999998 7999999999997544  


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhCCCccccccccC-----CCcEEEEeecCCCce--------EEcCcc-----cccccccc
Q 046865          283 QGFLAQKHAQVAAKNLKVLMVGERESKMATYWP-----HSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPG  344 (369)
Q Consensus       283 ~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~~-----~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~  344 (369)
                      +++.|.+||+++|.||+    |.+....+...|     .|+++.+|+++.++.        ...++.     ...+...|
T Consensus       317 ~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g  392 (461)
T PRK05249        317 LASASMDQGRIAAQHAV----GEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVG  392 (461)
T ss_pred             cHhHHHHHHHHHHHHHc----CCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCc
Confidence            68999999999999997    432211112222     479999999876553        222222     13466789


Q ss_pred             eecccccchHHHHHHcCCCCCccCC
Q 046865          345 LIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       345 ~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ++|+  ++++++++|||+|++|.||
T Consensus       393 ~~kl--v~~~~~~~ilG~~~~g~~a  415 (461)
T PRK05249        393 MLKI--LFHRETLEILGVHCFGERA  415 (461)
T ss_pred             EEEE--EEECCCCEEEEEEEECCCH
Confidence            9999  9999999999999999775

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=5.9e-50  Score=379.23  Aligned_cols=346  Identities=20%  Similarity=0.213  Sum_probs=257.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc---cccc------------------c-cC----Ccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA---SLRA------------------M-VE----PSFGE   64 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~---~~~~------------------~-~~----~~~~~   64 (369)
                      ++|||+||||||||++||..|+ .|.+|+|||++. +|..+.   .+..                  + +.    ..+..
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   79 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW   79 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence            3689999999999999999986 599999999964 443221   0000                  0 00    00110


Q ss_pred             cceecc------------cccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCC-CChHHHH-HHHHH
Q 046865           65 RSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTRTERL-NQYQA  128 (369)
Q Consensus        65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p-~~~~~~~-~~~~~  128 (369)
                      .....+            ...+  .+++++.+++...+.++|.. +++.+.||+||||||++|..| +++.... .+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~  158 (450)
T TIGR01421        80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDG  158 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHH
Confidence            010000            0111  25788888888877777766 567899999999999998777 5442111 11122


Q ss_pred             HHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC
Q 046865          129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS  208 (369)
Q Consensus       129 ~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  208 (369)
                      .......+++++|||+|++|+|+|..|+.  .+.+|+++++.+++++.+++++.+.+++.|+++||++++++.+.+++.+
T Consensus       159 ~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~  236 (450)
T TIGR01421       159 FFALEELPKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKT  236 (450)
T ss_pred             hhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEe
Confidence            22222357999999999999999999984  5899999999999999999999999999999999999999999998754


Q ss_pred             CCC-eEEEcCCC-cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHH
Q 046865          209 EGS-DTYLTSTG-DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL  286 (369)
Q Consensus       209 ~~~-~~v~~~~g-~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~  286 (369)
                      ++. +.+.+++| +++++|.||+|+|++||++++....++++++++|+|.||+++|| +.|||||+|||++.+.  .++.
T Consensus       237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~--~~~~  313 (450)
T TIGR01421       237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVE--LTPV  313 (450)
T ss_pred             CCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcc--cHHH
Confidence            333 56677777 57999999999999999997765666667888999999999998 7999999999997654  6789


Q ss_pred             HHHHHHHHHHHHHHHhhCCCccc-ccccc-----CCCcEEEEeecCCCceEEc----------Cccc-----ccccccce
Q 046865          287 AQKHAQVAAKNLKVLMVGERESK-MATYW-----PHSAIAIVSLGRKDAVAQL----------PFMT-----TIGCVPGL  345 (369)
Q Consensus       287 A~~~g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~~~v~lg~~~~~~~~----------~~~~-----~~g~~~~~  345 (369)
                      |.+||+++|+||+.   +....+ .+...     ..|+++.+|+++.+|...+          ++..     ..+...++
T Consensus       314 A~~~g~~aa~~i~~---~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  390 (450)
T TIGR01421       314 AIAAGRKLSERLFN---GKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCR  390 (450)
T ss_pred             HHHHHHHHHHHHhc---CCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceE
Confidence            99999999999972   111110 01111     2589999999887664321          1111     13667899


Q ss_pred             ecccccchHHHHHHcCCCCCccCC
Q 046865          346 IKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       346 ~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +|+  ++++++++|||+|++|.||
T Consensus       391 ~kl--v~~~~~~~ilG~~~~g~~a  412 (450)
T TIGR01421       391 MKL--VCAGKEEKVVGLHGIGDGV  412 (450)
T ss_pred             EEE--EEECCCCEEEEEEEECCCH
Confidence            999  9999999999999999775

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN02507 glutathione reductase

Probab=100.00  E-value=2.8e-49  Score=377.98  Aligned_cols=350  Identities=20%  Similarity=0.211  Sum_probs=258.4

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCC---------CCccccccc--------c----------cc---c
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEITWAS--------L----------RA---M   57 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~---------~~~~~~~~~--------~----------~~---~   57 (369)
                      +...+|||+||||||||+.||.++. .|.+|+|||++         +.+|..+..        +          ..   +
T Consensus        21 ~~~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~  100 (499)
T PLN02507         21 ATHYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNY  100 (499)
T ss_pred             ccccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhc
Confidence            3345799999999999999999986 59999999962         334433211        1          00   0


Q ss_pred             -cC----Ccccccceecc------------ccc--cccceEEEeeeeeeecce--EEecCCe--EEeccEEEEccCCCCC
Q 046865           58 -VE----PSFGERSVINH------------TDY--LVNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDP  114 (369)
Q Consensus        58 -~~----~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~--v~~~~g~--~~~~d~lviAtG~~~~  114 (369)
                       ..    ..+....+...            ...  ..+++++++++.++++++  |.+.+|+  ++.||+||||||++|.
T Consensus       101 G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        101 GWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             CcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence             00    01111111101            001  136889999999999874  4445664  5899999999999987


Q ss_pred             CCCChHHH-HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCC
Q 046865          115 VPKTRTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK  193 (369)
Q Consensus       115 ~p~~~~~~-~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~g  193 (369)
                      .|+++... ..+..........+++++|+|+|++|+|+|..|..  .+.+|+++++.+++++.+++++.+.+.+.|+++|
T Consensus       181 ~p~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G  258 (499)
T PLN02507        181 RPNIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPLRGFDDEMRAVVARNLEGRG  258 (499)
T ss_pred             CCCCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCC
Confidence            66554211 11222222223457899999999999999999874  5899999999999999999999999999999999


Q ss_pred             cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEec
Q 046865          194 VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIG  273 (369)
Q Consensus       194 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~G  273 (369)
                      |++++++.|.+++.+++.+.+.+.+|+++++|.+++++|++||++++.....+++++++|+|.||+++|| +.|||||+|
T Consensus       259 I~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiG  337 (499)
T PLN02507        259 INLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIG  337 (499)
T ss_pred             CEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEee
Confidence            9999999999987655566777778889999999999999999988655555557788899999999998 899999999


Q ss_pred             ccCCccccchhHHHHHHHHHHHHHHHHHhhCCCcc-ccccccC-----CCcEEEEeecCCCceEE---------cCccc-
Q 046865          274 DITDIREIKQGFLAQKHAQVAAKNLKVLMVGERES-KMATYWP-----HSAIAIVSLGRKDAVAQ---------LPFMT-  337 (369)
Q Consensus       274 D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~-~~~~~~~-----~~~~~~v~lg~~~~~~~---------~~~~~-  337 (369)
                      ||++.+.  +++.|.+||+++|+||+    +.... ..+...|     .|+++.+|+++.+|...         .++.. 
T Consensus       338 Dv~~~~~--l~~~A~~qg~~aa~ni~----g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~~~~~~~~~~~  411 (499)
T PLN02507        338 DVTNRIN--LTPVALMEGTCFAKTVF----GGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPM  411 (499)
T ss_pred             EcCCCCc--cHHHHHHHHHHHHHHHc----CCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCEEEEEeecCcc
Confidence            9997643  68999999999999997    32211 1111112     47899999987655432         12211 


Q ss_pred             ----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          338 ----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       338 ----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                          ..+...+++|+  ++++++++|||+|++|.||
T Consensus       412 ~~~~~~~~~~g~~Kl--i~d~~t~~ilG~~~vg~~a  445 (499)
T PLN02507        412 KNTISGRQEKTVMKL--IVDAETDKVLGASMCGPDA  445 (499)
T ss_pred             ccccccCCCCEEEEE--EEECCCCEEEEEEEECCCH
Confidence                12245789998  9999999999999999775

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.7e-49  Score=376.84  Aligned_cols=346  Identities=18%  Similarity=0.243  Sum_probs=257.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------ccc----------c----c---CCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------LRA----------M----V---EPSFGER   65 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~~~----------~----~---~~~~~~~   65 (369)
                      .+|||+||||||||++||..|+ .|.+|+|||+++.+|..+..        +..          .    +   ...+...
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID   82 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            4699999999999999999987 59999999998666543211        000          0    0   0001111


Q ss_pred             ceeccc------------ccc--ccceEEEeeeeeeecceEEe--cCC--eEEeccEEEEccCCCCC-CCCChH--HHHH
Q 046865           66 SVINHT------------DYL--VNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDP-VPKTRT--ERLN  124 (369)
Q Consensus        66 ~~~~~~------------~~~--~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lviAtG~~~~-~p~~~~--~~~~  124 (369)
                      .+..+.            ..+  .+++++++.+.+++++++..  .+|  .++.||+||||||++|. .|..+.  ..+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~  162 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIW  162 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEE
Confidence            111111            001  26889999999999886544  345  47999999999999986 443321  1122


Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      +..........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+++.|+++ |++++++.++.
T Consensus       163 ~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~  239 (471)
T PRK06467        163 DSTDALELKEVPKRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTA  239 (471)
T ss_pred             ChHHhhccccCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence            222222333457999999999999999999984  599999999999999999999999999999988 99999999998


Q ss_pred             ccCCCCCeEEEcCC--C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc
Q 046865          205 DSVSEGSDTYLTST--G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE  280 (369)
Q Consensus       205 i~~~~~~~~v~~~~--g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~  280 (369)
                      ++..++.+.+.+.+  +  +++++|.+|+|+|++||++++.....++.++++|+|.||++||| +.|+|||+|||++.+.
T Consensus       240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~  318 (471)
T PRK06467        240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPM  318 (471)
T ss_pred             EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCcc
Confidence            87655555565443  2  36999999999999999987766666668889999999999998 7999999999997544


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhCCCcccccccc-----CCCcEEEEeecCCCce--------EEcCcc-----cccccc
Q 046865          281 IKQGFLAQKHAQVAAKNLKVLMVGERESKMATYW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCV  342 (369)
Q Consensus       281 ~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~  342 (369)
                        +++.|.+||+++|.||+    |..........     ..|+++.+|+++.++.        ..+++.     ...+..
T Consensus       319 --la~~A~~eG~~aa~~i~----g~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~  392 (471)
T PRK06467        319 --LAHKGVHEGHVAAEVIA----GKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCA  392 (471)
T ss_pred             --cHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCCC
Confidence              78999999999999997    32211111111     2589999999876653        233322     134667


Q ss_pred             cceecccccchHHHHHHcCCCCCccCC
Q 046865          343 PGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       343 ~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .|++|+  ++++++++|||+|++|.||
T Consensus       393 ~g~~kl--i~d~~t~~ilG~~~vg~~a  417 (471)
T PRK06467        393 DGMTKL--IFDKETHRVLGGAIVGTNA  417 (471)
T ss_pred             ceEEEE--EEECCCCeEEEEEEECCCH
Confidence            899999  9999999999999999875

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=2.9e-49  Score=376.04  Aligned_cols=345  Identities=23%  Similarity=0.276  Sum_probs=259.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------cc----c-cC---Ccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RA----M-VE---PSFGE   64 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~----~-~~---~~~~~   64 (369)
                      .+|||+||||||||++||..|+ .|++|+|||++ .+|..+...                  ..    + +.   +.+..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW   81 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence            3689999999999999999987 59999999986 344321110                  00    0 00   00110


Q ss_pred             cceecc------------cccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHHH-HHHHHHH
Q 046865           65 RSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTER-LNQYQAE  129 (369)
Q Consensus        65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~-~~~~~~~  129 (369)
                      ..+...            ...+  .+++++.+++.+++.++|.+ +++++.||+||||||+.|..|+++... ..+....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~  160 (450)
T PRK06116         82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSDGF  160 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHh
Confidence            000000            0011  36889999999999888887 678899999999999998877654311 1112222


Q ss_pred             HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC
Q 046865          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE  209 (369)
Q Consensus       130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  209 (369)
                      ......+++++|+|+|++|+|+|..|.+  .+.+|+++++++++++.+++++.+.+.+.|++.||++++++.|.+++.++
T Consensus       161 ~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~  238 (450)
T PRK06116        161 FALEELPKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA  238 (450)
T ss_pred             hCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcC
Confidence            2223457899999999999999999874  48999999999999999999999999999999999999999999987654


Q ss_pred             CC-eEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHH
Q 046865          210 GS-DTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQ  288 (369)
Q Consensus       210 ~~-~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~  288 (369)
                      +. +.+.+.+|+++++|.+|+|+|++|+++.+.....++.++++|+|.||+++|| +.|||||+|||++.+  ++++.|.
T Consensus       239 ~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~~~~~A~  315 (450)
T PRK06116        239 DGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRV--ELTPVAI  315 (450)
T ss_pred             CceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCc--CcHHHHH
Confidence            43 6677788889999999999999999987655555567888999999999998 799999999999754  3688999


Q ss_pred             HHHHHHHHHHHHHhhCCCc-c-ccccccC-----CCcEEEEeecCCCceEE----------cCccc-----cccccccee
Q 046865          289 KHAQVAAKNLKVLMVGERE-S-KMATYWP-----HSAIAIVSLGRKDAVAQ----------LPFMT-----TIGCVPGLI  346 (369)
Q Consensus       289 ~~g~~~a~~i~~~~~g~~~-~-~~~~~~~-----~~~~~~v~lg~~~~~~~----------~~~~~-----~~g~~~~~~  346 (369)
                      +||+++|+||+    |... . ..+...|     .|+++.+|+++.++...          .++..     ..+...|++
T Consensus       316 ~~g~~aa~~i~----g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  391 (450)
T PRK06116        316 AAGRRLSERLF----NNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLM  391 (450)
T ss_pred             HHHHHHHHHHh----CCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCceEE
Confidence            99999999997    3221 1 1111222     58999999987655332          12211     235678999


Q ss_pred             cccccchHHHHHHcCCCCCccCC
Q 046865          347 KSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       347 k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      |+  ++++++++|||+|++|.||
T Consensus       392 kl--v~~~~~~~ilG~~~~g~~a  412 (450)
T PRK06116        392 KL--VVVGKEEKVVGLHGIGFGA  412 (450)
T ss_pred             EE--EEECCCCEEEEEEEECCCH
Confidence            99  9999999999999999764

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=4e-49  Score=373.36  Aligned_cols=346  Identities=23%  Similarity=0.299  Sum_probs=258.0

Q ss_pred             cceEEEECCChHHHHHHHHcccCCcEEEEcCCCCcccc--------cccc----------cc---c-cC---Ccccccc-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEIT--------WASL----------RA---M-VE---PSFGERS-   66 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~~~--------~~~~----------~~---~-~~---~~~~~~~-   66 (369)
                      +|||||||||++|.+||.++ .|.+|+|||++. +|..        ...+          ..   + +.   ..+.... 
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   78 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI   78 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence            48999999999999999775 499999999864 3321        1100          00   0 00   0111000 


Q ss_pred             ----------eec--cccc---cccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChH---HHHHHHHH
Q 046865           67 ----------VIN--HTDY---LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---ERLNQYQA  128 (369)
Q Consensus        67 ----------~~~--~~~~---~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---~~~~~~~~  128 (369)
                                +..  ...+   ..+++++.+++.++++++|.+.+++++.||+||||||++|..|+++.   ..+.+..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~  158 (451)
T PRK07846         79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDT  158 (451)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHH
Confidence                      000  0111   13688999999999999998888888999999999999988776542   11222233


Q ss_pred             HHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC
Q 046865          129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS  208 (369)
Q Consensus       129 ~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  208 (369)
                      .......+++++|+|+|++|+|+|..|.+  .+.+|+++++++++++.+++++.+.+.+.+ +.+|++++++.+.+++.+
T Consensus       159 ~~~l~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        159 IMRLPELPESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             HhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence            33333458999999999999999999984  599999999999999999999998887655 568999999999998765


Q ss_pred             CCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHH
Q 046865          209 EGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQ  288 (369)
Q Consensus       209 ~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~  288 (369)
                      ++.+.+.+.+|+++++|.+++|+|++||++++....++++++++|+|.||+++|| +.|||||+|||++.+.  +++.|.
T Consensus       236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~--l~~~A~  312 (451)
T PRK07846        236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQ--LKHVAN  312 (451)
T ss_pred             CCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCcc--ChhHHH
Confidence            5556677778889999999999999999998766556667888999999999997 7999999999998654  689999


Q ss_pred             HHHHHHHHHHHHHhhCC--Cc--cccccccCCCcEEEEeecCCCce--------EEcCccc-----ccccccceeccccc
Q 046865          289 KHAQVAAKNLKVLMVGE--RE--SKMATYWPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVPGLIKSRDL  351 (369)
Q Consensus       289 ~~g~~~a~~i~~~~~g~--~~--~~~~~~~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~~~~k~~~~  351 (369)
                      +||+++|+||+......  ..  .+...| ..|+++.+|+++.++.        ..+++..     ..+...+++|+  +
T Consensus       313 ~~g~~~a~ni~~~~~~~~~~~~~~p~~if-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i  389 (451)
T PRK07846        313 HEARVVQHNLLHPDDLIASDHRFVPAAVF-THPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKL--I  389 (451)
T ss_pred             HHHHHHHHHHcCCCCccccCCCCCCeEEE-CCCCcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEEEE--E
Confidence            99999999997321000  00  011112 2589999999877663        2222221     24566899999  9


Q ss_pred             chHHHHHHcCCCCCccCC
Q 046865          352 FVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       352 ~~~~~~~ilG~~~~~~~~  369 (369)
                      +++++++|||+|++|.||
T Consensus       390 ~d~~~~~ilG~~~~g~~a  407 (451)
T PRK07846        390 ADRDTGRLLGAHIIGPQA  407 (451)
T ss_pred             EECCCCEEEEEEEECCCH
Confidence            999999999999999775

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=3.5e-49  Score=374.39  Aligned_cols=345  Identities=21%  Similarity=0.215  Sum_probs=257.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------c----------cc---c-c--C-Ccccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------L----------RA---M-V--E-PSFGERS   66 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~----------~~---~-~--~-~~~~~~~   66 (369)
                      +|||+||||||||++||..++ .|++|+|||++ .+|..+..        +          ..   + .  . ..+....
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK   80 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence            589999999999999999986 59999999985 45533211        0          00   0 0  0 0000000


Q ss_pred             ee--------cc----cccc--ccceEEEeeeeeeecceEEe-cCCeEEeccEEEEccCCCCCCCCChHHHH-HHHHHHH
Q 046865           67 VI--------NH----TDYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTRTERL-NQYQAEN  130 (369)
Q Consensus        67 ~~--------~~----~~~~--~~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lviAtG~~~~~p~~~~~~~-~~~~~~~  130 (369)
                      ..        ..    ...+  .+++++.+++..++++++.. .+++.+.||+||||||++|..|+++.... .+.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~  160 (446)
T TIGR01424        81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF  160 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence            00        00    0111  26789999999998875543 45678999999999999988776542211 1122222


Q ss_pred             HHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC
Q 046865          131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG  210 (369)
Q Consensus       131 ~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  210 (369)
                      .....+++++|+|+|++|+|+|..+..  .+.+|+++++++++++.+++++.+.+.+.|+++||++++++.+.+++.+++
T Consensus       161 ~l~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  238 (446)
T TIGR01424       161 HLPTLPKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD  238 (446)
T ss_pred             cccccCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence            222457899999999999999999874  589999999999999999999999999999999999999999998875555


Q ss_pred             CeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHH
Q 046865          211 SDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKH  290 (369)
Q Consensus       211 ~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~  290 (369)
                      ...+.+.+|+++++|.+|+|+|++||++.+.....+++++++|+|.||+++|| +.|||||+|||++.+  .+++.|.+|
T Consensus       239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~l~~~A~~~  315 (446)
T TIGR01424       239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRI--NLTPVAIME  315 (446)
T ss_pred             eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCc--cchhHHHHH
Confidence            56677778889999999999999999987655555667788899999999998 799999999999754  378999999


Q ss_pred             HHHHHHHHHHHhhCCCccc-ccccc-----CCCcEEEEeecCCCceEE---------cCccc-----ccccccceecccc
Q 046865          291 AQVAAKNLKVLMVGERESK-MATYW-----PHSAIAIVSLGRKDAVAQ---------LPFMT-----TIGCVPGLIKSRD  350 (369)
Q Consensus       291 g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~~~v~lg~~~~~~~---------~~~~~-----~~g~~~~~~k~~~  350 (369)
                      |+++|+||+    +....+ .+...     ..|+++.+|++++++...         .++..     ..+...+++|+  
T Consensus       316 g~~~a~~i~----~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kl--  389 (446)
T TIGR01424       316 ATCFANTEF----GNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKL--  389 (446)
T ss_pred             HHHHHHHHh----cCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEE--
Confidence            999999997    322111 11111     258999999987655432         11111     24566799999  


Q ss_pred             cchHHHHHHcCCCCCccCC
Q 046865          351 LFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       351 ~~~~~~~~ilG~~~~~~~~  369 (369)
                      ++++++++|||+|++|.||
T Consensus       390 i~d~~~~~ilG~~~~g~~a  408 (446)
T TIGR01424       390 VVDEKDDKVLGAHMVGPDA  408 (446)
T ss_pred             EEeCCCCEEEEEEEECCCH
Confidence            9999999999999999775

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=3.6e-49  Score=374.92  Aligned_cols=349  Identities=20%  Similarity=0.177  Sum_probs=257.6

Q ss_pred             CcceEEEECCChHHHHHHHHccc--CCcEEEEcCC--------CCcccccc--------cc----------cc---c-c-
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPK--------EYFEITWA--------SL----------RA---M-V-   58 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~--------~~~~~~~~--------~~----------~~---~-~-   58 (369)
                      .+|||+|||||+||+.||.++++  |.+|+|||++        +.+|..+.        .+          +.   + + 
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            46999999999999999998864  7999999974        34543211        00          00   0 0 


Q ss_pred             ----CCcccccceecc------------cccc---ccceEEEeeeeeeecceEEecC--------CeEEeccEEEEccCC
Q 046865           59 ----EPSFGERSVINH------------TDYL---VNGRIVASPAINITENEVLTAE--------GRRVVYDYLVIATGH  111 (369)
Q Consensus        59 ----~~~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~~~~~v~~~~--------g~~~~~d~lviAtG~  111 (369)
                          ...+.......+            ...+   .+++++++++.++++++|...+        .++++||+||||||+
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs  161 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS  161 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence                000111011111            1112   3689999999999988776532        257999999999999


Q ss_pred             CCCCCCChHH-HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhh-CCCCeEEEEEcCccccccCCcchHHHHHHHH
Q 046865          112 KDPVPKTRTE-RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTLDWL  189 (369)
Q Consensus       112 ~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~-~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l  189 (369)
                      +|..|+++.. ...+..........+++++|||+|++|+|+|..+... ..+.+|+++++.+++++.+++++.+.+.+.|
T Consensus       162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L  241 (486)
T TIGR01423       162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL  241 (486)
T ss_pred             CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence            9887766432 1222222222224579999999999999999877532 1389999999999999999999999999999


Q ss_pred             HhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCC
Q 046865          190 ISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKN  268 (369)
Q Consensus       190 ~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~  268 (369)
                      +++||++++++.+.+++.+++ ...+.+.+|+++++|.+|+|+|++|+++++....++++++++|+|.||+++|| +.||
T Consensus       242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~  320 (486)
T TIGR01423       242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN  320 (486)
T ss_pred             HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence            999999999999998875433 35667777889999999999999999988766556667888999999999998 7999


Q ss_pred             eEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccc-cccccC-----CCcEEEEeecCCCceEEc--------C
Q 046865          269 IFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESK-MATYWP-----HSAIAIVSLGRKDAVAQL--------P  334 (369)
Q Consensus       269 i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~-~~~~~~-----~~~~~~v~lg~~~~~~~~--------~  334 (369)
                      |||+|||++.+.  +++.|.+||+++|+||+    |....+ .+...|     .|+++.+|+++.+|....        +
T Consensus       321 IyA~GDv~~~~~--l~~~A~~qG~~aa~ni~----g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~~~~~  394 (486)
T TIGR01423       321 IYAIGDVTDRVM--LTPVAINEGAAFVDTVF----GNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESS  394 (486)
T ss_pred             EEEeeecCCCcc--cHHHHHHHHHHHHHHHh----CCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEEEEEe
Confidence            999999997654  78999999999999997    322111 111112     489999999887664321        1


Q ss_pred             ccc----cccc--ccceecccccchHHHHHHcCCCCCccCC
Q 046865          335 FMT----TIGC--VPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       335 ~~~----~~g~--~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +..    ..+.  ..+++|+  ++++++++|||+|++|.||
T Consensus       395 ~~~~~~~~~~~~~~~g~~Kl--v~d~~~~~iLGa~ivg~~a  433 (486)
T TIGR01423       395 FTPLMHNISGSKYKKFVAKI--VTNHADGTVLGVHLLGDSS  433 (486)
T ss_pred             eCchhhhhccCccCceEEEE--EEECCCCEEEEEEEECCCH
Confidence            111    1122  2589998  9999999999999999875

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=2e-48  Score=369.01  Aligned_cols=343  Identities=22%  Similarity=0.289  Sum_probs=257.2

Q ss_pred             cceEEEECCChHHHHHHHHcccCCcEEEEcCCCCcccc--------ccccc-------------cc-cC---Ccccc---
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEIT--------WASLR-------------AM-VE---PSFGE---   64 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~~~--------~~~~~-------------~~-~~---~~~~~---   64 (369)
                      +|||||||+|+||+.||..+ .|.+|+|||++. +|..        ...+.             .+ +.   ..+..   
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~   79 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI   79 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence            69999999999999997665 499999999864 3321        11000             00 00   00100   


Q ss_pred             -----c----ceec--ccccc----ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChH-H--HHHHH
Q 046865           65 -----R----SVIN--HTDYL----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-E--RLNQY  126 (369)
Q Consensus        65 -----~----~~~~--~~~~~----~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~-~--~~~~~  126 (369)
                           .    ....  .....    .+++++.+++.+.+.++|.+.++++++||+||||||++|..|+... .  .+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~  159 (452)
T TIGR03452        80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTN  159 (452)
T ss_pred             HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcH
Confidence                 0    0000  00111    4789999999999988888888888999999999999998876321 1  12222


Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.++ .+|++++++.|.+++
T Consensus       160 ~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V~~i~  236 (452)
T TIGR03452       160 EDIMRLPELPESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNVTAVE  236 (452)
T ss_pred             HHHHhhhhcCCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEEEEEE
Confidence            3333333458999999999999999999974  5899999999999999899999988877554 689999999999987


Q ss_pred             CCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHH
Q 046865          207 VSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL  286 (369)
Q Consensus       207 ~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~  286 (369)
                      .+++.+.+++.+|+++++|.+++++|++||++++.....+++++++|+|.||+++|| +.|+|||+|||++.+  ++++.
T Consensus       237 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~l~~~  313 (452)
T TIGR03452       237 QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPY--QLKHV  313 (452)
T ss_pred             EcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcc--cChhH
Confidence            655566677778889999999999999999998766655667888999999999997 799999999999764  46899


Q ss_pred             HHHHHHHHHHHHHHHhhCCCc--ccccccc-----CCCcEEEEeecCCCce--------EEcCcc-----ccccccccee
Q 046865          287 AQKHAQVAAKNLKVLMVGERE--SKMATYW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLI  346 (369)
Q Consensus       287 A~~~g~~~a~~i~~~~~g~~~--~~~~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~  346 (369)
                      |.+||+++|+||..    ...  ...+...     ..|+++.+|+++.++.        ...++.     ...+...+++
T Consensus       314 A~~~g~~~a~ni~~----~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  389 (452)
T TIGR03452       314 ANAEARVVKHNLLH----PNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFC  389 (452)
T ss_pred             HHHHHHHHHHHhcC----CCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEE
Confidence            99999999999973    211  1111122     3689999999877663        222222     1246678999


Q ss_pred             cccccchHHHHHHcCCCCCccCC
Q 046865          347 KSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       347 k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      |+  ++++++++|||+|++|.||
T Consensus       390 Kl--v~d~~t~~ilG~~~vg~~a  410 (452)
T TIGR03452       390 KL--IADRDTGKLLGAHIIGPQA  410 (452)
T ss_pred             EE--EEECCCCEEEEEEEECCCH
Confidence            99  9999999999999999875

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.6e-48  Score=370.11  Aligned_cols=345  Identities=21%  Similarity=0.272  Sum_probs=256.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC-ccccccccccc-----c-----CCcccc-----cceec-c----
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWASLRAM-----V-----EPSFGE-----RSVIN-H----   70 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~-~~~~~~~~~~~-----~-----~~~~~~-----~~~~~-~----   70 (369)
                      +|||||||||+||++||..|+ .|++|+|||+++. +|..+......     .     ..++..     +.... .    
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN   82 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence            589999999999999999986 5999999999763 55433211000     0     001100     00000 0    


Q ss_pred             -cc--ccccceEEEeeeeeeecceE--EecCCe-EEeccEEEEccCCCCCCCCChHH----HHHHHHHHHHHHhcCCeEE
Q 046865           71 -TD--YLVNGRIVASPAINITENEV--LTAEGR-RVVYDYLVIATGHKDPVPKTRTE----RLNQYQAENQKIKSARSIL  140 (369)
Q Consensus        71 -~~--~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~d~lviAtG~~~~~p~~~~~----~~~~~~~~~~~~~~~~~v~  140 (369)
                       ..  ...+++++.+++.+++.+.+  ...++. ++.||+||+|||++|..|+++..    .+.+..........+++++
T Consensus        83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~  162 (441)
T PRK08010         83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG  162 (441)
T ss_pred             HHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEE
Confidence             01  11368899999999987744  444664 69999999999999876654321    1222222333334678999


Q ss_pred             EEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc
Q 046865          141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD  220 (369)
Q Consensus       141 vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~  220 (369)
                      |+|+|++|+|+|..|.+  .+.+|+++++++++++.+++++.+.+.+.|+++||++++++.+.+++.+++.+.+.++++ 
T Consensus       163 ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-  239 (441)
T PRK08010        163 ILGGGYIGVEFASMFAN--FGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-  239 (441)
T ss_pred             EECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-
Confidence            99999999999999984  499999999999999988999999999999999999999999999876555555665555 


Q ss_pred             EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHH
Q 046865          221 TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV  300 (369)
Q Consensus       221 ~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~  300 (369)
                      ++++|.+++|+|++||++++.....++.++++|+|.||+++|| +.|||||+|||++.+  ++++.|..||++++.||+ 
T Consensus       240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~--~~~~~a~~~~~~~~~~~~-  315 (441)
T PRK08010        240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGL--QFTYISLDDYRIVRDELL-  315 (441)
T ss_pred             eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHc-
Confidence            6999999999999999987665555667788899999999998 799999999999865  468999999999999997 


Q ss_pred             HhhCCCcccccc--cc-----CCCcEEEEeecCCCce--------EEcCcc-----cccccccceecccccchHHHHHHc
Q 046865          301 LMVGERESKMAT--YW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLIKSRDLFVGKTRKQM  360 (369)
Q Consensus       301 ~~~g~~~~~~~~--~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~k~~~~~~~~~~~il  360 (369)
                         |........  ..     .+|+++.+|++++++.        ..+++.     ...+...+++|+  ++++++++||
T Consensus       316 ---g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~d~~~~~il  390 (441)
T PRK08010        316 ---GEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKA--IVDNKTQRIL  390 (441)
T ss_pred             ---CCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEE--EEECCCCEEE
Confidence               321110101  11     2689999999876653        222221     134556789998  9999999999


Q ss_pred             CCCCCccCC
Q 046865          361 GLEPDVAHA  369 (369)
Q Consensus       361 G~~~~~~~~  369 (369)
                      |+|++|.||
T Consensus       391 G~~~~g~~a  399 (441)
T PRK08010        391 GASLLCVDS  399 (441)
T ss_pred             EEEEECCCH
Confidence            999999775

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=5.9e-47  Score=356.64  Aligned_cols=326  Identities=24%  Similarity=0.267  Sum_probs=248.3

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCccccccccccccCCccc-ccceecccccc--ccceEEEeeeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVINHTDYL--VNGRIVASPAINI   87 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~   87 (369)
                      .+++|||||||+||+.+|+.|.+ +.+|+|||+++++.+.+... ........ .....+....+  .+++|+.++++.+
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLP-QTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHH-HhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence            35799999999999999999964 68999999999887653322 22221111 11111222222  2578999999999


Q ss_pred             ecc--eEEe----------cCCeEEeccEEEEccCCCCCCCCChHH--------HHHHHHHHHHH---------------
Q 046865           88 TEN--EVLT----------AEGRRVVYDYLVIATGHKDPVPKTRTE--------RLNQYQAENQK---------------  132 (369)
Q Consensus        88 ~~~--~v~~----------~~g~~~~~d~lviAtG~~~~~p~~~~~--------~~~~~~~~~~~---------------  132 (369)
                      |..  .+.+          .++.++.||+||||||+.+..|+++..        .+.+.....+.               
T Consensus        88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~  167 (424)
T PTZ00318         88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV  167 (424)
T ss_pred             EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence            854  5655          456789999999999999764433211        11111111111               


Q ss_pred             --HhcCCeEEEEcCChhHHHHHHHHhhhC------------CCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEe
Q 046865          133 --IKSARSILIVGGGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKL  198 (369)
Q Consensus       133 --~~~~~~v~vvG~G~~g~e~a~~l~~~~------------~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~  198 (369)
                        ....++++|||+|++|+|+|.+|.+.+            .+.+|+++++++++++.+++++.+.+++.|+++||++++
T Consensus       168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~  247 (424)
T PTZ00318        168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRT  247 (424)
T ss_pred             HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence              112258999999999999999987532            468999999999999999999999999999999999999


Q ss_pred             CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865          199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI  278 (369)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~  278 (369)
                      +++|.+++.+    .+++++|+++++|.+||++|.+|+ +++...+  ++++++|+|.||++||++++|||||+|||+..
T Consensus       248 ~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~--l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~  320 (424)
T PTZ00318        248 KTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLK--VDKTSRGRISVDDHLRVKPIPNVFALGDCAAN  320 (424)
T ss_pred             CCeEEEEeCC----EEEECCCCEEEccEEEEccCCCCc-chhhhcC--CcccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence            9999988632    366788999999999999999997 4555444  36778899999999997789999999999975


Q ss_pred             c---ccchhHHHHHHHHHHHHHHHHHhhCCCccccccccCCCcEEEEeecCCCceEEcCcccccccccceec
Q 046865          279 R---EIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIK  347 (369)
Q Consensus       279 ~---~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~~~~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k  347 (369)
                      +   .++++..|++||+++|+||.+.+.|++  ...+|.+.....++++|...++++..++.+.|+..+++|
T Consensus       321 ~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~--~~~~~~~~~~g~~~~lG~~~av~~~~~~~~~g~~a~~~~  390 (424)
T PTZ00318        321 EERPLPTLAQVASQQGVYLAKEFNNELKGKP--MSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKALLFW  390 (424)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHhcCCC--CCCCCeecCCceEEEecCCceEEEcCCceEecHHHHHHH
Confidence            2   356789999999999999999998864  234555555567899999999999888888888777765

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=1.4e-47  Score=362.41  Aligned_cols=340  Identities=16%  Similarity=0.268  Sum_probs=253.4

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcccc-cceecc--cccc--ccceEE-Eeee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGE-RSVINH--TDYL--VNGRIV-ASPA   84 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~-~~~~   84 (369)
                      ++|||||||+||++||.+|++   +.+|+|||+++++.+....+.......... .....+  ..+.  .++++. ..++
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            489999999999999998863   689999999998776544433332221111 111111  1221  256764 4678


Q ss_pred             eeeecc--eEEecCC---e--EEeccEEEEccCCCCCCCCChHH------HHHHHHHHHHHH--hcCCeEEEEcCChhHH
Q 046865           85 INITEN--EVLTAEG---R--RVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKI--KSARSILIVGGGPTGV  149 (369)
Q Consensus        85 ~~~~~~--~v~~~~g---~--~~~~d~lviAtG~~~~~p~~~~~------~~~~~~~~~~~~--~~~~~v~vvG~G~~g~  149 (369)
                      ..+|..  +|.+.++   .  ++.||+||||||+.|..|+++..      .+.+.....+..  ..+++++|+|+|++|+
T Consensus        82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~  161 (438)
T PRK13512         82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL  161 (438)
T ss_pred             EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence            888754  5655432   2  47999999999999988875421      122333222221  2478999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEE
Q 046865          150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFL  229 (369)
Q Consensus       150 e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~  229 (369)
                      |+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.|++.||++++++.+.+++.    ..+++++|+++++|.+++
T Consensus       162 E~A~~l~~--~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~~v~~~~g~~~~~D~vl~  235 (438)
T PRK13512        162 EVLENLYE--RGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING----NEVTFKSGKVEHYDMIIE  235 (438)
T ss_pred             HHHHHHHh--CCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC----CEEEECCCCEEEeCEEEE
Confidence            99999974  589999999999999999999999999999999999999999998853    246667788999999999


Q ss_pred             cCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc--------ccchhHHHHHHHHHHHHHHHHH
Q 046865          230 CTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR--------EIKQGFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       230 a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~--------~~~~~~~A~~~g~~~a~~i~~~  301 (369)
                      |+|++||++++...++  .++++|+|.||+++|| ++|||||+|||++.+        ..++++.|.+||+++|+||+  
T Consensus       236 a~G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~--  310 (438)
T PRK13512        236 GVGTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA--  310 (438)
T ss_pred             CcCCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc--
Confidence            9999999998866544  6778899999999998 799999999998632        23567889999999999997  


Q ss_pred             hhCCCccccccc-------cCCCcEEEEeecCCCceE------EcCcc----cccccccceecccccchHHHHHHcCCCC
Q 046865          302 MVGERESKMATY-------WPHSAIAIVSLGRKDAVA------QLPFM----TTIGCVPGLIKSRDLFVGKTRKQMGLEP  364 (369)
Q Consensus       302 ~~g~~~~~~~~~-------~~~~~~~~v~lg~~~~~~------~~~~~----~~~g~~~~~~k~~~~~~~~~~~ilG~~~  364 (369)
                        |.+......+       ..+|+++.+|+++.++..      .+++.    ...+...|++|+  ++++++++|||+|+
T Consensus       311 --g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~kl--v~d~~~~~ilGa~~  386 (438)
T PRK13512        311 --GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRV--YYDTSNRKILRAAA  386 (438)
T ss_pred             --CCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEE--EEECCCCeEEEEEE
Confidence              4321111011       135899999998776542      11111    124667889998  99999999999999


Q ss_pred             CccC
Q 046865          365 DVAH  368 (369)
Q Consensus       365 ~~~~  368 (369)
                      +|.|
T Consensus       387 ~g~~  390 (438)
T PRK13512        387 VGKE  390 (438)
T ss_pred             Eccc
Confidence            9987

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=3.1e-48  Score=370.05  Aligned_cols=351  Identities=20%  Similarity=0.228  Sum_probs=255.2

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc---c-----------------c--cC----Ccc
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR---A-----------------M--VE----PSF   62 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~---~-----------------~--~~----~~~   62 (369)
                      +..+||||||||||||++||..|+ .|++|+|||+.. +|..+....   .                 .  +.    ...
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV   80 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence            345699999999999999999987 599999999864 332211100   0                 0  00    011


Q ss_pred             ccccee------------cccccc---ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHH---HHH
Q 046865           63 GERSVI------------NHTDYL---VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE---RLN  124 (369)
Q Consensus        63 ~~~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~---~~~  124 (369)
                      ....+.            ....++   .+++++.++..+++.+++.+ +++++.||+||||||++|..|+++..   .+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~  159 (463)
T PRK06370         81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYL  159 (463)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceE
Confidence            110000            011111   26888888888888887776 46789999999999999887765421   122


Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      +..........+++++|+|+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.|++.||++++++.|.+
T Consensus       160 ~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~  237 (463)
T PRK06370        160 TNETIFSLDELPEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIR  237 (463)
T ss_pred             cchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence            222222223457999999999999999999984  489999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCeEEEc--C-CCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc
Q 046865          205 DSVSEGSDTYLT--S-TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI  281 (369)
Q Consensus       205 i~~~~~~~~v~~--~-~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~  281 (369)
                      ++.+++...+.+  . +++++++|.||+|+|++||++.+.....++.++++|+|.||++||| +.|||||+|||++.+  
T Consensus       238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~--  314 (463)
T PRK06370        238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRG--  314 (463)
T ss_pred             EEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCc--
Confidence            876554444433  2 3457999999999999999985543444557788999999999998 799999999999764  


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhCCCccccccc--cCCCcEEEEeecCCCce--------EEcCccc-----cccccccee
Q 046865          282 KQGFLAQKHAQVAAKNLKVLMVGERESKMATY--WPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVPGLI  346 (369)
Q Consensus       282 ~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~--~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~~~~  346 (369)
                      ++++.|.+||+++|+||+............++  ...|+++.+|+++.++.        ..+++..     ..+...+++
T Consensus       315 ~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  394 (463)
T PRK06370        315 AFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFM  394 (463)
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEEE
Confidence            46889999999999999732100000001111  12589999999876553        2222221     256678999


Q ss_pred             cccccchHHHHHHcCCCCCccCC
Q 046865          347 KSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       347 k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      |+  ++++++++|||+|++|.||
T Consensus       395 kl--i~d~~~~~ilG~~~~g~~a  415 (463)
T PRK06370        395 KV--VVDADTDRILGATILGVHG  415 (463)
T ss_pred             EE--EEECCCCEEEEEEEECCCH
Confidence            99  9999999999999999875

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=9.1e-48  Score=367.34  Aligned_cols=346  Identities=20%  Similarity=0.226  Sum_probs=256.1

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc------------------c--cc-----CCcccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR------------------A--MV-----EPSFGE   64 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~------------------~--~~-----~~~~~~   64 (369)
                      ..++||+|||||+||+++|..|+ .|.+|+|||+++.+|..|....                  .  +.     .+.+..
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   93 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDR   93 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCH
Confidence            45799999999999999999997 4999999999866665432110                  0  00     011110


Q ss_pred             ccee-------------cccccc---ccceEEEeeeeeeecceEE--ecCC--eEEeccEEEEccCCCCCCCCChHH---
Q 046865           65 RSVI-------------NHTDYL---VNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDPVPKTRTE---  121 (369)
Q Consensus        65 ~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lviAtG~~~~~p~~~~~---  121 (369)
                      ....             .+...+   .+++++++.+.+.+.+++.  ..++  .++.||+||||||+.|..|+++..   
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~  173 (479)
T PRK14727         94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDT  173 (479)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCcc
Confidence            0000             011111   2578899999999887543  3455  369999999999999887765421   


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCce
Q 046865          122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      ...+..........+++++|||+|++|+|+|..|.+  .+.+|+++++. ++++.+++++.+.+++.|++.||+++++++
T Consensus       174 ~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~  250 (479)
T PRK14727        174 PYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYAR--LGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQ  250 (479)
T ss_pred             ceecchHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcE
Confidence            111111111222357999999999999999999974  58999999885 678888999999999999999999999999


Q ss_pred             eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc
Q 046865          202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI  281 (369)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~  281 (369)
                      +..++.+++.+.+.+.++ ++++|.+|+|+|++||++++.....++.++++|+|.||+++|| +.|||||+|||++.+. 
T Consensus       251 V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~-  327 (479)
T PRK14727        251 ASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQ-  327 (479)
T ss_pred             EEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcch-
Confidence            998875555555665555 6999999999999999987765555667888999999999998 7999999999997654 


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhCCCccc-----cccccCCCcEEEEeecCCCce--------EEcCccc-----cccccc
Q 046865          282 KQGFLAQKHAQVAAKNLKVLMVGERESK-----MATYWPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVP  343 (369)
Q Consensus       282 ~~~~~A~~~g~~~a~~i~~~~~g~~~~~-----~~~~~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~  343 (369)
                       ..+.|..||+++|.||+    |.+...     +......|+++.+|+++.++.        ..+++..     ..+...
T Consensus       328 -~~~~A~~~G~~aa~~i~----g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  402 (479)
T PRK14727        328 -FVYVAAAAGSRAGINMT----GGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETD  402 (479)
T ss_pred             -hhhHHHHHHHHHHHHHc----CCCcccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCC
Confidence             67899999999999997    322111     111123689999999877663        2222221     234567


Q ss_pred             ceecccccchHHHHHHcCCCCCccCC
Q 046865          344 GLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       344 ~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +++|+  ++++++++|||+|++|.||
T Consensus       403 g~~Kl--i~d~~~~~ilG~~~~g~~a  426 (479)
T PRK14727        403 GFIKL--VAEEGTRKLIGAQILAHEG  426 (479)
T ss_pred             eEEEE--EEECCCCEEEEEEEECCCH
Confidence            89998  9999999999999999875

>PLN02546 glutathione reductase

Probab=100.00  E-value=1.6e-47  Score=367.31  Aligned_cols=347  Identities=20%  Similarity=0.210  Sum_probs=256.5

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCC---------CCccccc--------cccc----------c---c-c
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEITW--------ASLR----------A---M-V   58 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~---------~~~~~~~--------~~~~----------~---~-~   58 (369)
                      ..+|||+|||||+||+.||..|+ .|.+|+|||+.         ..+|..+        ..+.          .   + +
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~  156 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW  156 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence            34689999999999999999986 69999999962         2233211        0100          0   0 0


Q ss_pred             ----CCcccccceec------------ccccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChH
Q 046865           59 ----EPSFGERSVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT  120 (369)
Q Consensus        59 ----~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~  120 (369)
                          ...+.......            +...+  .+++++.+++.+++++++.+ +|+.+.||+||||||++|..|+++.
T Consensus       157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG  235 (558)
T PLN02546        157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPG  235 (558)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCC
Confidence                00111111110            11111  26899999999999988776 5778999999999999988776543


Q ss_pred             -HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeC
Q 046865          121 -ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       121 -~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                       +.+.+..........+++++|||+|++|+|+|..|..  .+.+|+++++.+++++.+++++.+.+++.|+++||+++++
T Consensus       236 ~~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~  313 (558)
T PLN02546        236 IEHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTE  313 (558)
T ss_pred             hhhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeC
Confidence             2223333333333568999999999999999999984  4899999999999999999999999999999999999999


Q ss_pred             ceeeeccCC-CCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865          200 QRVNLDSVS-EGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI  278 (369)
Q Consensus       200 ~~v~~i~~~-~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~  278 (369)
                      +.+.+++.. ++.+.+.+.+++...+|.+|+++|++||++++..+.++++++++|+|.||+++|| +.|||||+|||++.
T Consensus       314 ~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~  392 (558)
T PLN02546        314 ESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDR  392 (558)
T ss_pred             CEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCC
Confidence            999988643 3334555555544558999999999999987654555567888899999999998 79999999999976


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhCCCcc-ccccccC-----CCcEEEEeecCCCceEE--------cCccc-----cc
Q 046865          279 REIKQGFLAQKHAQVAAKNLKVLMVGERES-KMATYWP-----HSAIAIVSLGRKDAVAQ--------LPFMT-----TI  339 (369)
Q Consensus       279 ~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~-~~~~~~~-----~~~~~~v~lg~~~~~~~--------~~~~~-----~~  339 (369)
                      +.  +++.|.+||+++|+||.    |.... ..+...|     .|+++.+|+++.+|...        .++..     ..
T Consensus       393 ~~--l~~~A~~~g~~~a~~i~----g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~  466 (558)
T PLN02546        393 IN--LTPVALMEGGALAKTLF----GNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSG  466 (558)
T ss_pred             cc--cHHHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEecccchhhhhC
Confidence            43  68899999999999997    32211 1111222     48999999987765432        12211     12


Q ss_pred             ccccceecccccchHHHHHHcCCCCCccCC
Q 046865          340 GCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       340 g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +...+++|+  ++++++++|||+|++|.||
T Consensus       467 ~~~~g~~Kl--v~d~~t~~ILGa~ivG~~a  494 (558)
T PLN02546        467 LPDRVFMKL--IVCAKTNKVLGVHMCGEDA  494 (558)
T ss_pred             CCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence            245789998  9999999999999999875

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=4.6e-48  Score=369.13  Aligned_cols=345  Identities=23%  Similarity=0.255  Sum_probs=254.8

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc---c-----------cccC----------Cccccccee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R-----------AMVE----------PSFGERSVI   68 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~---~-----------~~~~----------~~~~~~~~~   68 (369)
                      ||||||||||||++||..|+ .|.+|+|||+++ +|..+...   .           ....          ..+......
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL   79 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence            69999999999999999987 599999999976 44332110   0           0000          000000000


Q ss_pred             c-------------ccccc--ccceEEEeeeeeeecceEEecCC-eEEeccEEEEccCCCCCCCCChHH---HHHHHHHH
Q 046865           69 N-------------HTDYL--VNGRIVASPAINITENEVLTAEG-RRVVYDYLVIATGHKDPVPKTRTE---RLNQYQAE  129 (369)
Q Consensus        69 ~-------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~p~~~~~---~~~~~~~~  129 (369)
                      .             +...+  .+++++.+++.+++.+++.+.++ ..+.||+||||||+.|..|+++..   .+.+....
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~  159 (463)
T TIGR02053        80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA  159 (463)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence            0             11111  26788999999988888888765 468999999999999877665421   12222222


Q ss_pred             HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC
Q 046865          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE  209 (369)
Q Consensus       130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  209 (369)
                      ......+++++|||+|++|+|+|..|..  .+.+|+++++.+++++.+++++...+++.+++.||+++++++|.+++.++
T Consensus       160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~  237 (463)
T TIGR02053       160 LALDRIPESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG  237 (463)
T ss_pred             hCcccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence            2222347899999999999999999984  48999999999999999999999999999999999999999999887655


Q ss_pred             CCeEEEcC---CCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHH
Q 046865          210 GSDTYLTS---TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL  286 (369)
Q Consensus       210 ~~~~v~~~---~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~  286 (369)
                      +...+.+.   +++++++|.+|+|+|++|+++.+.....+++++++|+|.||++||| +.|||||+|||++.+  ++++.
T Consensus       238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~--~~~~~  314 (463)
T TIGR02053       238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGL--QLEYV  314 (463)
T ss_pred             CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCc--ccHhH
Confidence            44444442   2357999999999999999985544445557788999999999998 799999999999864  47899


Q ss_pred             HHHHHHHHHHHHHHHhhCCCccc-----cccccCCCcEEEEeecCCCce--------EEcCcc-----cccccccceecc
Q 046865          287 AQKHAQVAAKNLKVLMVGERESK-----MATYWPHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLIKS  348 (369)
Q Consensus       287 A~~~g~~~a~~i~~~~~g~~~~~-----~~~~~~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~k~  348 (369)
                      |.+||+++|.||+..   .+...     +......|+++.+|+++.++.        ..+++.     ...+...+++|+
T Consensus       315 A~~~g~~aa~ni~~~---~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl  391 (463)
T TIGR02053       315 AAKEGVVAAENALGG---ANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKL  391 (463)
T ss_pred             HHHHHHHHHHHhcCC---CCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEE
Confidence            999999999999731   01110     111123689999999876653        222221     134667899998


Q ss_pred             cccchHHHHHHcCCCCCccCC
Q 046865          349 RDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       349 ~~~~~~~~~~ilG~~~~~~~~  369 (369)
                        ++++++++|||+|++|.||
T Consensus       392 --i~d~~~~~ilG~~~~g~~a  410 (463)
T TIGR02053       392 --VAEPGTGKVLGVQVVAPEA  410 (463)
T ss_pred             --EEECCCCEEEEEEEECCCH
Confidence              9999999999999999875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.1e-47  Score=364.45  Aligned_cols=345  Identities=20%  Similarity=0.230  Sum_probs=251.3

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------cc------cccC-----Ccccccceecc--
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------LR------AMVE-----PSFGERSVINH--   70 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~~------~~~~-----~~~~~~~~~~~--   70 (369)
                      +|||+||||||||++||.+|+ .|.+|+|||++. +|..+..        +.      ....     ..........+  
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   82 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA   82 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence            589999999999999999986 599999999863 3321110        00      0000     00000000000  


Q ss_pred             ----------------ccc--cccceEEEeeeeeeecceEEe--cCC--eEEeccEEEEccCCCCCC-CCChH-HHHHHH
Q 046865           71 ----------------TDY--LVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPV-PKTRT-ERLNQY  126 (369)
Q Consensus        71 ----------------~~~--~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lviAtG~~~~~-p~~~~-~~~~~~  126 (369)
                                      ...  ..+++.+.+.+.+++.+++..  .+|  +++.||+||||||++|.. |+.+. ..+.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~  162 (466)
T PRK07818         83 AFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTY  162 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEch
Confidence                            000  125678888888888876544  344  479999999999999865 43321 112222


Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .........+++++|+|+|++|+|+|..|++  .+.+|+++++.+++++.+++++.+.+++.|+++||++++++.|.+++
T Consensus       163 ~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~  240 (466)
T PRK07818        163 EEQILSRELPKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESID  240 (466)
T ss_pred             HHHhccccCCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            2222222457899999999999999999984  48999999999999999999999999999999999999999999987


Q ss_pred             CCCCCeEEEcC--CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc
Q 046865          207 VSEGSDTYLTS--TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK  282 (369)
Q Consensus       207 ~~~~~~~v~~~--~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~  282 (369)
                      .+++.+.+.+.  +|  +++++|.+|+|+|++||++.+.....++.++++|+|.||+++|| +.|+|||+|||++.+  +
T Consensus       241 ~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~--~  317 (466)
T PRK07818        241 DNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKL--Q  317 (466)
T ss_pred             EeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCc--c
Confidence            55444444443  56  37999999999999999987655555567788899999999998 799999999999753  4


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhCCCcccc--cccc-----CCCcEEEEeecCCCce--------EEcCcc-----cccccc
Q 046865          283 QGFLAQKHAQVAAKNLKVLMVGERESKM--ATYW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCV  342 (369)
Q Consensus       283 ~~~~A~~~g~~~a~~i~~~~~g~~~~~~--~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~  342 (369)
                      +++.|..||++||.||+    |.+..+.  +...     ..|+++.+|+++.++.        ..+++.     ...+..
T Consensus       318 l~~~A~~~g~~aa~~i~----g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  393 (466)
T PRK07818        318 LAHVAEAQGVVAAETIA----GAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDP  393 (466)
T ss_pred             cHhHHHHHHHHHHHHHc----CCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCC
Confidence            78999999999999997    4321111  1112     2689999999876553        222221     124667


Q ss_pred             cceecccccchHHHHHHcCCCCCccCC
Q 046865          343 PGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       343 ~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+++|+  ++++++++|||+|++|.||
T Consensus       394 ~g~~Kl--v~~~~~~~ilG~~~vg~~a  418 (466)
T PRK07818        394 TGFVKL--VADAKYGELLGGHLIGPDV  418 (466)
T ss_pred             CeEEEE--EEECCCCeEEEEEEECCCH
Confidence            899999  9999999999999999875

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2e-47  Score=364.80  Aligned_cols=345  Identities=22%  Similarity=0.270  Sum_probs=255.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccc----------------------c---CCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM----------------------V---EPSFGER   65 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~----------------------~---~~~~~~~   65 (369)
                      ..|||+||||||||++||..|+ .|.+|+|||+++ +|..+......                      .   ...+...
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK   81 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence            4699999999999999999986 599999999987 55432111000                      0   0000111


Q ss_pred             ceecc------------ccc--cccceEEEeeeeeeecceEEec--C-CeEEeccEEEEccCCCCCCC-CChH--HHHHH
Q 046865           66 SVINH------------TDY--LVNGRIVASPAINITENEVLTA--E-GRRVVYDYLVIATGHKDPVP-KTRT--ERLNQ  125 (369)
Q Consensus        66 ~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~--~-g~~~~~d~lviAtG~~~~~p-~~~~--~~~~~  125 (369)
                      .+..+            ...  ..+++++.+++..++++++...  + ++++.||+||||||++|..| +...  ..+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~  161 (462)
T PRK06416         82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT  161 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence            11111            011  1368899999999988755443  2 36899999999999998654 3321  11222


Q ss_pred             HHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       126 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..........+++++|+|+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+++.|+++||+++++++|.++
T Consensus       162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i  239 (462)
T PRK06416        162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV  239 (462)
T ss_pred             chHhhCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            22222223457899999999999999999984  4899999999999999999999999999999999999999999998


Q ss_pred             cCCCCCeEEEcCCC---cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc
Q 046865          206 SVSEGSDTYLTSTG---DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK  282 (369)
Q Consensus       206 ~~~~~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~  282 (369)
                      +.+++.+.+.+.++   +++++|.+|+|+|++|+++++.....++.++ +|++.||+++|| +.|+|||+|||+..+  +
T Consensus       240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~--~  315 (462)
T PRK06416        240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGP--M  315 (462)
T ss_pred             EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCc--c
Confidence            76555566666555   6799999999999999998865444445667 899999999997 799999999999754  3


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhCCCcccccccc-----CCCcEEEEeecCCCceE--------EcCcc-----cccccccc
Q 046865          283 QGFLAQKHAQVAAKNLKVLMVGERESKMATYW-----PHSAIAIVSLGRKDAVA--------QLPFM-----TTIGCVPG  344 (369)
Q Consensus       283 ~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-----~~~~~~~v~lg~~~~~~--------~~~~~-----~~~g~~~~  344 (369)
                      +++.|.+||+++|.||.    +.+........     .+|+++.+|+++.++..        ..++.     ...+...+
T Consensus       316 ~~~~A~~~g~~aa~ni~----~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g  391 (462)
T PRK06416        316 LAHKASAEGIIAAEAIA----GNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDG  391 (462)
T ss_pred             hHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCce
Confidence            78999999999999998    32211001111     25899999998776532        22211     13456789


Q ss_pred             eecccccchHHHHHHcCCCCCccCC
Q 046865          345 LIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       345 ~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ++|+  ++++++++|||+|++|.+|
T Consensus       392 ~~kl--i~~~~~~~ilG~~~~g~~a  414 (462)
T PRK06416        392 FVKL--IFDKKDGEVLGAHMVGARA  414 (462)
T ss_pred             EEEE--EEECCCCEEEEEEEECCCH
Confidence            9998  9999999999999999764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4e-47  Score=361.71  Aligned_cols=345  Identities=17%  Similarity=0.223  Sum_probs=248.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc---------------ccccC-----------Cccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---------------RAMVE-----------PSFGER   65 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~---------------~~~~~-----------~~~~~~   65 (369)
                      +|||+||||||||++||..++ .|++|+|||+++.+|..+...               .....           ..+...
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~   82 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA   82 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence            589999999999999999986 599999999865565432110               00000           000000


Q ss_pred             ceec------------ccccc--ccceEEEeeeeeeecceEE--ecCC--eEEeccEEEEccCCCCC-CCCChHH--HHH
Q 046865           66 SVIN------------HTDYL--VNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDP-VPKTRTE--RLN  124 (369)
Q Consensus        66 ~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lviAtG~~~~-~p~~~~~--~~~  124 (369)
                      ....            ...++  .+++++.+.+.+.+++++.  ..++  .+++||+||||||++|. +|+....  .+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~  162 (466)
T PRK06115         83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRII  162 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence            0000            00011  2478888888777766543  3455  36999999999999974 4543211  111


Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      +..........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+++.|++.||++++++.+.+
T Consensus       163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~  240 (466)
T PRK06115        163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTG  240 (466)
T ss_pred             CHHHHhCCccCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence            222222222468999999999999999999874  589999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCeEEEcC---C--CcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc
Q 046865          205 DSVSEGSDTYLTS---T--GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR  279 (369)
Q Consensus       205 i~~~~~~~~v~~~---~--g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~  279 (369)
                      ++.+++.+.+.+.   +  ++++++|.|++|+|++||++.+.....++.++++| +.||+++|| +.|+|||+|||++.+
T Consensus       241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~  318 (466)
T PRK06115        241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGP  318 (466)
T ss_pred             EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCc
Confidence            8765444444332   2  35799999999999999998766555555666666 778999998 799999999999865


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhCCCcc-----ccccccCCCcEEEEeecCCCce--------EEcCcc-----ccccc
Q 046865          280 EIKQGFLAQKHAQVAAKNLKVLMVGERES-----KMATYWPHSAIAIVSLGRKDAV--------AQLPFM-----TTIGC  341 (369)
Q Consensus       280 ~~~~~~~A~~~g~~~a~~i~~~~~g~~~~-----~~~~~~~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~  341 (369)
                      .  +++.|.+||+++|+||+    +....     .+......|+++.+|+.+.++.        ..+++.     ...+.
T Consensus       319 ~--la~~A~~~g~~aa~~i~----~~~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~  392 (466)
T PRK06115        319 M--LAHKAEDEAVACIERIA----GKAGEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHE  392 (466)
T ss_pred             c--cHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCC
Confidence            4  78999999999999997    32211     1111123689999999776553        222222     13456


Q ss_pred             ccceecccccchHHHHHHcCCCCCccCC
Q 046865          342 VPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       342 ~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..+++|+  ++++++++|||+|++|.||
T Consensus       393 ~~g~~kl--v~~~~~~~ilG~~~~g~~a  418 (466)
T PRK06115        393 TEGFAKI--LADARTDEVLGVHMVGPSV  418 (466)
T ss_pred             CceEEEE--EEECCCCEEEEEEEECCCH
Confidence            7899999  9999999999999999775

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=3.2e-47  Score=363.09  Aligned_cols=346  Identities=21%  Similarity=0.244  Sum_probs=252.3

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------c----------cc-----ccC---Cc
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------L----------RA-----MVE---PS   61 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~----------~~-----~~~---~~   61 (369)
                      |...++||+|||||+||++||..|+ .|.+|+|||++. +|..|..        +          ..     .+.   +.
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~   80 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV   80 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence            4567899999999999999999987 499999999874 4432211        0          00     000   01


Q ss_pred             ccccceec-------------ccc---ccccceEEEeeeeeeecc--eEEecCC--eEEeccEEEEccCCCCCCCCChH-
Q 046865           62 FGERSVIN-------------HTD---YLVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT-  120 (369)
Q Consensus        62 ~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~--~v~~~~g--~~~~~d~lviAtG~~~~~p~~~~-  120 (369)
                      +....+..             +..   ...+++++.+++.++|.+  .|.+.++  .+++||+||||||++|..|+++. 
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~  160 (468)
T PRK14694         81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGL  160 (468)
T ss_pred             cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCC
Confidence            11001000             001   112678999999999876  4555565  47999999999999987665432 


Q ss_pred             --HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEe
Q 046865          121 --ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKL  198 (369)
Q Consensus       121 --~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~  198 (369)
                        ..+.+..........+++++|+|+|++|+|+|..|.+  .+.+|+++++ +++++.+++++.+.+++.|++.||++++
T Consensus       161 ~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~  237 (468)
T PRK14694        161 AETPYLTSTSALELDHIPERLLVIGASVVALELAQAFAR--LGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLK  237 (468)
T ss_pred             CCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence              1111111122222457899999999999999999984  4899999987 4788888999999999999999999999


Q ss_pred             CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865          199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI  278 (369)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~  278 (369)
                      ++.+.+++.+++.+.+.+.++ ++++|.+|+|+|++||++++....++++. ++|+|.||+++|| +.|||||+|||++.
T Consensus       238 ~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~  314 (468)
T PRK14694        238 QTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ  314 (468)
T ss_pred             CCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC
Confidence            999998876555455555444 79999999999999999887554455554 5789999999998 79999999999976


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhCCCccccccc-----cCCCcEEEEeecCCCceE--------EcCccc-----ccc
Q 046865          279 REIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY-----WPHSAIAIVSLGRKDAVA--------QLPFMT-----TIG  340 (369)
Q Consensus       279 ~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~-----~~~~~~~~v~lg~~~~~~--------~~~~~~-----~~g  340 (369)
                      +.  +.+.|..||++||.||+    +......+..     ..+|+++.+|+++.+|..        .+++..     ..+
T Consensus       315 ~~--~~~~A~~~G~~aa~~i~----~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~  388 (468)
T PRK14694        315 PQ--FVYVAAAGGSRAAINMT----GGDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNF  388 (468)
T ss_pred             cc--cHHHHHHHHHHHHHHhc----CCCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcC
Confidence            54  67899999999999997    3321110111     136899999998765532        222221     234


Q ss_pred             cccceecccccchHHHHHHcCCCCCccCC
Q 046865          341 CVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       341 ~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ...|++|+  ++++++++|||+|++|.+|
T Consensus       389 ~~~g~~kl--v~~~~~~~ilG~~~~g~~a  415 (468)
T PRK14694        389 DTGGFIKM--VAERGSGRLLGVQVVAGEA  415 (468)
T ss_pred             CCceEEEE--EEECCCCEEEEEEEECCCH
Confidence            67889999  9999999999999999875

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=5.5e-47  Score=363.35  Aligned_cols=347  Identities=21%  Similarity=0.252  Sum_probs=253.1

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc--------cccc-------------c-cC--Cccccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--------SLRA-------------M-VE--PSFGER   65 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~--------~~~~-------------~-~~--~~~~~~   65 (369)
                      ..+|||||||||+||++||.+++ .|.+|+|||++. +|..+.        .+..             + +.  ......
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~  124 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP  124 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence            46789999999999999999987 499999999864 443211        0000             0 00  000000


Q ss_pred             ceecc------------cccc--ccceEEEeeeeeeecceEE----------------------------ecCCeEEecc
Q 046865           66 SVINH------------TDYL--VNGRIVASPAINITENEVL----------------------------TAEGRRVVYD  103 (369)
Q Consensus        66 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~----------------------------~~~g~~~~~d  103 (369)
                      .....            .+.+  .+++++.+++.++++++|.                            ..++++++||
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad  204 (561)
T PTZ00058        125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK  204 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence            00000            0111  2678999999888877653                            2356789999


Q ss_pred             EEEEccCCCCCCCCChHHH-HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchH
Q 046865          104 YLVIATGHKDPVPKTRTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG  182 (369)
Q Consensus       104 ~lviAtG~~~~~p~~~~~~-~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~  182 (369)
                      +||||||++|..|+++... ..+...... ...+++++|||+|++|+|+|..|..  .+.+|+++++++++++.+++++.
T Consensus       205 ~lVIATGS~P~~P~IpG~~~v~ts~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il~~~d~~i~  281 (561)
T PTZ00058        205 NILIAVGNKPIFPDVKGKEFTISSDDFFK-IKEAKRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLLRKFDETII  281 (561)
T ss_pred             EEEEecCCCCCCCCCCCceeEEEHHHHhh-ccCCCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecccccccCCHHHH
Confidence            9999999998877664321 111222222 2238999999999999999999974  59999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCC-cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc
Q 046865          183 DKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTG-DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN  260 (369)
Q Consensus       183 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g-~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~  260 (369)
                      +.+++.|++.||++++++.+.+++.+++ .+.+.+.++ +++++|.|++|+|++||++.+...++++. +++|+|.||++
T Consensus       282 ~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~  360 (561)
T PTZ00058        282 NELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDN  360 (561)
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcC
Confidence            9999999999999999999998875432 344544444 57999999999999999998877665443 46899999999


Q ss_pred             eeeccCCCeEEecccCCcc--------------------------------ccchhHHHHHHHHHHHHHHHHHhhCCCcc
Q 046865          261 LRVKGQKNIFAIGDITDIR--------------------------------EIKQGFLAQKHAQVAAKNLKVLMVGERES  308 (369)
Q Consensus       261 l~~~~~~~i~a~GD~~~~~--------------------------------~~~~~~~A~~~g~~~a~~i~~~~~g~~~~  308 (369)
                      +|| +.|||||+|||++.+                                .+++++.|.+||+++|.||.    |....
T Consensus       361 lqT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~----g~~~~  435 (561)
T PTZ00058        361 QRT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF----GPFSR  435 (561)
T ss_pred             Ccc-CCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh----CCCCc
Confidence            998 799999999999832                                24578999999999999997    32111


Q ss_pred             cc-cccc-----CCCcEEEEeecCCCceEEc----------Cccc-----c----cccccceecccccchHHHHHHcCCC
Q 046865          309 KM-ATYW-----PHSAIAIVSLGRKDAVAQL----------PFMT-----T----IGCVPGLIKSRDLFVGKTRKQMGLE  363 (369)
Q Consensus       309 ~~-~~~~-----~~~~~~~v~lg~~~~~~~~----------~~~~-----~----~g~~~~~~k~~~~~~~~~~~ilG~~  363 (369)
                      .. +...     ..|+++.+|+++.+|....          ++..     .    .+...+++|+  ++++++++|||+|
T Consensus       436 ~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~t~~ILG~~  513 (561)
T PTZ00058        436 TTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL--VCVGKEELIKGLH  513 (561)
T ss_pred             ccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEE--EEECCCCEEEEEE
Confidence            11 1111     2589999999877665221          1110     0    1245689998  9999999999999


Q ss_pred             CCccCC
Q 046865          364 PDVAHA  369 (369)
Q Consensus       364 ~~~~~~  369 (369)
                      ++|.||
T Consensus       514 ivG~~a  519 (561)
T PTZ00058        514 IVGLNA  519 (561)
T ss_pred             EECCCH
Confidence            999775

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.1e-46  Score=368.01  Aligned_cols=344  Identities=21%  Similarity=0.257  Sum_probs=252.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------c--cc---c---CCcccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------R--AM---V---EPSFGE   64 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~--~~---~---~~~~~~   64 (369)
                      ..||||||||||||++||..|+ .|.+|+|||++ .+|..+...                  .  .+   +   .+....
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  175 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR  175 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence            4699999999999999999986 59999999997 555432110                  0  00   0   011111


Q ss_pred             cceec-------------ccccc---ccceEEEeeeeeeecceEE--ecCC--eEEeccEEEEccCCCCCCCCChHH---
Q 046865           65 RSVIN-------------HTDYL---VNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDPVPKTRTE---  121 (369)
Q Consensus        65 ~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lviAtG~~~~~p~~~~~---  121 (369)
                      .....             +...+   .+++++++++.+++.+++.  +.+|  ++++||+||||||++|..|+++..   
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~  255 (561)
T PRK13748        176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET  255 (561)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence            10000             00111   2578999999999887543  3454  369999999999999887765421   


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCce
Q 046865          122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      .+.+..........+++++|||+|++|+|+|..|.+  .+.+|+++++. .+++.+++++.+.+++.|++.||++++++.
T Consensus       256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~  332 (561)
T PRK13748        256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFAR--LGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQ  332 (561)
T ss_pred             ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence            111111222223457999999999999999999984  48999999985 577778999999999999999999999999


Q ss_pred             eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc
Q 046865          202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI  281 (369)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~  281 (369)
                      +.+++.+++.+.+.+.++ ++++|.+|+|+|++||++++.....+++++++|+|.||+++|| +.|||||+|||++.+. 
T Consensus       333 v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~-  409 (561)
T PRK13748        333 ASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQ-  409 (561)
T ss_pred             EEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCcc-
Confidence            998876555555655555 7999999999999999987655555667888999999999998 7999999999998654 


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhCCCcccc-----ccccCCCcEEEEeecCCCce--------EEcCccc-----cccccc
Q 046865          282 KQGFLAQKHAQVAAKNLKVLMVGERESKM-----ATYWPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVP  343 (369)
Q Consensus       282 ~~~~~A~~~g~~~a~~i~~~~~g~~~~~~-----~~~~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~  343 (369)
                       +.+.|..||++||.||+    |......     ......|+++.+|+++.+|.        ..+++..     ..+...
T Consensus       410 -~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  484 (561)
T PRK13748        410 -FVYVAAAAGTRAAINMT----GGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTR  484 (561)
T ss_pred             -chhHHHHHHHHHHHHHc----CCCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCC
Confidence             67899999999999997    3221100     11113589999999876543        2222221     224567


Q ss_pred             ceecccccchHHHHHHcCCCCCccCC
Q 046865          344 GLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       344 ~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +++|+  ++++++++|||+|++|.+|
T Consensus       485 g~~kl--i~d~~~~~ilG~~~~g~~a  508 (561)
T PRK13748        485 GFIKL--VIEEGSGRLIGVQAVAPEA  508 (561)
T ss_pred             eEEEE--EEECCCCEEEEEEEECCCH
Confidence            89998  9999999999999999775

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.1e-46  Score=357.29  Aligned_cols=344  Identities=17%  Similarity=0.201  Sum_probs=253.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC-ccccccc---ccc-----ccCCcccccceec------------c
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWAS---LRA-----MVEPSFGERSVIN------------H   70 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~-~~~~~~~---~~~-----~~~~~~~~~~~~~------------~   70 (369)
                      +|||+||||||||++||..|+ .|.+|+|||+++. +|..+..   +..     .............            .
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN   82 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999986 5999999999864 4532211   100     0000000000000            0


Q ss_pred             cccc--ccceEEEeeeeeeecceEEecC---CeEEeccEEEEccCCCCCCCCChH----HHHHHHHHHHHHHhcCCeEEE
Q 046865           71 TDYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPKTRT----ERLNQYQAENQKIKSARSILI  141 (369)
Q Consensus        71 ~~~~--~~~~~~~~~~~~~~~~~v~~~~---g~~~~~d~lviAtG~~~~~p~~~~----~~~~~~~~~~~~~~~~~~v~v  141 (369)
                      .+.+  .+++++.+++.+++.+++...+   ..++.||+||||||++|..|+++.    ..+.+..........+++++|
T Consensus        83 ~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvI  162 (438)
T PRK07251         83 YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGI  162 (438)
T ss_pred             HHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEE
Confidence            0111  3688899998888888776543   247999999999999976554432    122223333333356889999


Q ss_pred             EcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcE
Q 046865          142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDT  221 (369)
Q Consensus       142 vG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~  221 (369)
                      ||+|++|+|+|..|++  .+.+|+++++.+++++..++++.+.+.+.+++.||++++++.+.+++.+++.+.+. .++++
T Consensus       163 IGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~-~~g~~  239 (438)
T PRK07251        163 IGGGNIGLEFAGLYNK--LGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV-TEDET  239 (438)
T ss_pred             ECCCHHHHHHHHHHHH--cCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE-ECCeE
Confidence            9999999999999974  58999999999999998899999999999999999999999999987654444444 45678


Q ss_pred             EeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHH
Q 046865          222 IKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       222 i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~  301 (369)
                      +++|.+|+|+|++|+++.+.....++.++++|++.||+++|| +.|||||+|||++.+.  +.+.|..+|++++.++.. 
T Consensus       240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~--~~~~a~~~~~~~~~~~~~-  315 (438)
T PRK07251        240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQ--FTYISLDDFRIVFGYLTG-  315 (438)
T ss_pred             EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcc--cHhHHHHHHHHHHHHHcC-
Confidence            999999999999999887665544556778899999999998 7999999999997544  679999999999998873 


Q ss_pred             hhCCCc--------cccccccCCCcEEEEeecCCCceEE--------cCcc-----cccccccceecccccchHHHHHHc
Q 046865          302 MVGERE--------SKMATYWPHSAIAIVSLGRKDAVAQ--------LPFM-----TTIGCVPGLIKSRDLFVGKTRKQM  360 (369)
Q Consensus       302 ~~g~~~--------~~~~~~~~~~~~~~v~lg~~~~~~~--------~~~~-----~~~g~~~~~~k~~~~~~~~~~~il  360 (369)
                         .+.        .+...| .+|+++.+|+.++++...        +.+.     ...+...|++|+  ++++++++||
T Consensus       316 ---~~~~~~~~~~~~p~~~~-~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~d~~~~~il  389 (438)
T PRK07251        316 ---DGSYTLEDRGNVPTTMF-ITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKV--VVNTETKEIL  389 (438)
T ss_pred             ---CCCccccccCCCCEEEE-CCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEE--EEECCCCEEE
Confidence               211        011112 368999999976655321        1111     134556789999  9999999999


Q ss_pred             CCCCCccCC
Q 046865          361 GLEPDVAHA  369 (369)
Q Consensus       361 G~~~~~~~~  369 (369)
                      |+|++|.||
T Consensus       390 G~~~~g~~a  398 (438)
T PRK07251        390 GATLFGEGS  398 (438)
T ss_pred             EEEEECCCH
Confidence            999999775

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=7.6e-47  Score=359.83  Aligned_cols=344  Identities=23%  Similarity=0.242  Sum_probs=254.0

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc--------cccc-------------c-cCC------cccc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--------SLRA-------------M-VEP------SFGE   64 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~--------~~~~-------------~-~~~------~~~~   64 (369)
                      +||+|||||++|+.||..++ +|.+|+|||++. +|..+.        .+..             + +..      .+..
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL   80 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence            58999999999999999886 599999999875 332211        0000             0 000      0000


Q ss_pred             ccee------------cccccc--ccceEEEeeeee----eecceE--EecCCe--EEeccEEEEccCCCCCCCCCh---
Q 046865           65 RSVI------------NHTDYL--VNGRIVASPAIN----ITENEV--LTAEGR--RVVYDYLVIATGHKDPVPKTR---  119 (369)
Q Consensus        65 ~~~~------------~~~~~~--~~~~~~~~~~~~----~~~~~v--~~~~g~--~~~~d~lviAtG~~~~~p~~~---  119 (369)
                      ....            .+.+.+  .+++++.+++..    ++++++  ...+|.  ++.||+||+|||+.|..|+..   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~  160 (466)
T PRK07845         81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD  160 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence            0000            001111  268999999888    555544  344564  799999999999998755421   


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeC
Q 046865          120 TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      ...+.++.........+++++|+|+|++|+|+|..|++  .+.+|+++++.+++++.+++++.+.+.+.|+++||+++++
T Consensus       161 ~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~  238 (466)
T PRK07845        161 GERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKR  238 (466)
T ss_pred             CceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcC
Confidence            11122222222222457899999999999999999974  4899999999999999999999999999999999999999


Q ss_pred             ceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc
Q 046865          200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR  279 (369)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~  279 (369)
                      +.+.+++.+++.+.+.+.+|+++++|.+++++|++||++.+....++++++++|+|.||+++|| +.|||||+|||++.+
T Consensus       239 ~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~  317 (466)
T PRK07845        239 SRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGVL  317 (466)
T ss_pred             CEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCCc
Confidence            9999887555566677778889999999999999999987654555567888899999999998 799999999999764


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhCCCcccc-cccc-----CCCcEEEEeecCCCce--------EEcCcc-----cccc
Q 046865          280 EIKQGFLAQKHAQVAAKNLKVLMVGERESKM-ATYW-----PHSAIAIVSLGRKDAV--------AQLPFM-----TTIG  340 (369)
Q Consensus       280 ~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~-~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g  340 (369)
                        ++++.|..||++++.||+    +.+..+. +...     ..|+++.+|+++.++.        ..+++.     ...+
T Consensus       318 --~l~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~  391 (466)
T PRK07845        318 --PLASVAAMQGRIAMYHAL----GEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSG  391 (466)
T ss_pred             --cchhHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccCchhhhcC
Confidence              478999999999999998    3221111 1111     2589999999865442        222221     1356


Q ss_pred             cccceecccccchHHHHHHcCCCCCccCC
Q 046865          341 CVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       341 ~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ...|++|+  ++++++++|||+|++|.+|
T Consensus       392 ~~~g~~kl--i~d~~~~~ilG~~~~g~~a  418 (466)
T PRK07845        392 LRDGFVKL--FCRPGTGVVIGGVVVAPRA  418 (466)
T ss_pred             CCceEEEE--EEECCCCEEEEEEEECCCH
Confidence            67899999  9999999999999999875

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.5e-46  Score=356.24  Aligned_cols=345  Identities=25%  Similarity=0.334  Sum_probs=254.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------cc---c-cC---Cccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RA---M-VE---PSFGER   65 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~---~-~~---~~~~~~   65 (369)
                      .+|||||||||+||++||..|+ .|.+|+|||+ +.+|..+...                  ..   + +.   ......
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~   80 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK   80 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence            4589999999999999999986 5999999999 4555432210                  00   0 00   011110


Q ss_pred             ceecc-------------c--cccccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCC-CCCCCCh---HHHHHHH
Q 046865           66 SVINH-------------T--DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTR---TERLNQY  126 (369)
Q Consensus        66 ~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~p~~~---~~~~~~~  126 (369)
                      .+...             .  ....+++++.+.+..++.+++.+ +++++.||+||+|||+. |.+|+..   ...+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~  159 (460)
T PRK06292         81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTS  159 (460)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECc
Confidence            00000             0  01125778888888888887766 67789999999999999 8888752   1122222


Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+++.|+++ |++++++.+.+++
T Consensus       160 ~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~  236 (460)
T PRK06292        160 DDAFELDKLPKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE  236 (460)
T ss_pred             hHHhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEE
Confidence            2222223467999999999999999999984  489999999999999999999999999999999 9999999999987


Q ss_pred             CCCC-CeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865          207 VSEG-SDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ  283 (369)
Q Consensus       207 ~~~~-~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~  283 (369)
                      .+++ .+.+++.++  +++++|.+++|+|++||++.+.....++.++++|+|.||+++|| +.|||||+|||++.+.  +
T Consensus       237 ~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~--~  313 (460)
T PRK06292        237 KSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPP--L  313 (460)
T ss_pred             EcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCcc--c
Confidence            5443 344433333  47999999999999999997655555567788899999999998 7999999999997643  6


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcccc-----ccccCCCcEEEEeecCCCceE--------EcCcc-----cccccccce
Q 046865          284 GFLAQKHAQVAAKNLKVLMVGERESKM-----ATYWPHSAIAIVSLGRKDAVA--------QLPFM-----TTIGCVPGL  345 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~~~g~~~~~~-----~~~~~~~~~~~v~lg~~~~~~--------~~~~~-----~~~g~~~~~  345 (369)
                      ++.|.+||++||.||...   ......     ......|+++.+|+++.++..        .+++.     ...+...++
T Consensus       314 ~~~A~~qg~~aa~~i~~~---~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  390 (460)
T PRK06292        314 LHEAADEGRIAAENAAGD---VAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGF  390 (460)
T ss_pred             hhHHHHHHHHHHHHhcCC---CCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeE
Confidence            889999999999999732   111100     111135899999998766532        22221     134567899


Q ss_pred             ecccccchHHHHHHcCCCCCccCC
Q 046865          346 IKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       346 ~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +|+  ++++++++|||+|++|.+|
T Consensus       391 ~kl--v~d~~~~~ilG~~~vg~~a  412 (460)
T PRK06292        391 VKV--YADKKTGRLLGAHIIGPDA  412 (460)
T ss_pred             EEE--EEECCCCEEEEEEEECCCH
Confidence            999  9999999999999999764

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=5.4e-46  Score=360.79  Aligned_cols=286  Identities=19%  Similarity=0.217  Sum_probs=214.8

Q ss_pred             ceEEEeeeeeeecceEEec-CCeEEeccEEEEccCCCCCCCCCh---HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHH
Q 046865           77 GRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDPVPKTR---TERLNQYQAENQKIKSARSILIVGGGPTGVELA  152 (369)
Q Consensus        77 ~~~~~~~~~~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~p~~~---~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a  152 (369)
                      ++++.+.+.++++++|... +++++.||+||||||++|.+|+..   ...+.+..........+++++|||+|++|+|+|
T Consensus       249 v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A  328 (659)
T PTZ00153        249 VQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFM  328 (659)
T ss_pred             eEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHH
Confidence            6788999999998877653 567899999999999999887632   112222233222234578999999999999999


Q ss_pred             HHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHH-HhCCcEEEeCceeeeccCCCCC--eEEEcCC-------C---
Q 046865          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWL-ISKKVDVKLGQRVNLDSVSEGS--DTYLTST-------G---  219 (369)
Q Consensus       153 ~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~-------g---  219 (369)
                      ..|..  .+.+|+++++.+++++.+++++.+.+.+.+ +++||++++++.|.+++.+++.  +.+.+.+       +   
T Consensus       329 ~~l~~--~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~  406 (659)
T PTZ00153        329 DIYTA--LGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKK  406 (659)
T ss_pred             HHHHh--CCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccc
Confidence            98874  489999999999999999999999999876 6789999999999998754432  4444321       1   


Q ss_pred             -----cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeecc-----CCCeEEecccCCccccchhHHHHH
Q 046865          220 -----DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKG-----QKNIFAIGDITDIREIKQGFLAQK  289 (369)
Q Consensus       220 -----~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~-----~~~i~a~GD~~~~~~~~~~~~A~~  289 (369)
                           +++++|.||||+|++||++.+....+++.++ +|+|.||++|||..     .|||||+|||++.+  ++++.|.+
T Consensus       407 ~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~--~La~~A~~  483 (659)
T PTZ00153        407 NMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ--MLAHTASH  483 (659)
T ss_pred             ccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc--cCHHHHHH
Confidence                 2799999999999999999876555555665 59999999999842     69999999999764  47899999


Q ss_pred             HHHHHHHHHHHHhh----C---C--Ccccccccc-----CCCcEEEEeecCCCceEEc----------Cccc-----ccc
Q 046865          290 HAQVAAKNLKVLMV----G---E--RESKMATYW-----PHSAIAIVSLGRKDAVAQL----------PFMT-----TIG  340 (369)
Q Consensus       290 ~g~~~a~~i~~~~~----g---~--~~~~~~~~~-----~~~~~~~v~lg~~~~~~~~----------~~~~-----~~g  340 (369)
                      ||+++++||.....    +   .  .....+...     ..|+++.+|+++.++....          .+..     ..+
T Consensus       484 qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~  563 (659)
T PTZ00153        484 QALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCEN  563 (659)
T ss_pred             HHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhcc
Confidence            99999999973200    0   0  110001111     2589999999877653221          1110     111


Q ss_pred             c----------------------ccceecccccchHHHHHHcCCCCCccCC
Q 046865          341 C----------------------VPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       341 ~----------------------~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .                      ..|++|+  ++++++++|||+|++|.||
T Consensus       564 ~~~~p~~~~~~~y~~g~~~~~~~~~G~vKl--i~d~~t~rILGa~ivG~~A  612 (659)
T PTZ00153        564 NISFPNNSKNNSYNKGKYNTVDNTEGMVKI--VYLKDTKEILGMFIVGSYA  612 (659)
T ss_pred             ccccccccccccccccccccccCCceEEEE--EEECCCCeEEEEEEECCCH
Confidence            1                      6889999  9999999999999999886

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=2e-45  Score=351.08  Aligned_cols=347  Identities=19%  Similarity=0.248  Sum_probs=252.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcC------CCCcccccccc--------c----------cc-----cCC-
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP------KEYFEITWASL--------R----------AM-----VEP-   60 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~------~~~~~~~~~~~--------~----------~~-----~~~-   60 (369)
                      ..||++|||||+||++||.+++ .|.+|+|||+      ...+|..+...        .          ..     +.. 
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~   82 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD   82 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence            3689999999999999999986 5999999998      23333221110        0          00     000 


Q ss_pred             --cccccceecc------------ccc--cccceEEEeeeeeee----cceEEec--CCeEEeccEEEEccCCCCCC-CC
Q 046865           61 --SFGERSVINH------------TDY--LVNGRIVASPAINIT----ENEVLTA--EGRRVVYDYLVIATGHKDPV-PK  117 (369)
Q Consensus        61 --~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~----~~~v~~~--~g~~~~~d~lviAtG~~~~~-p~  117 (369)
                        .+........            ..+  ..+++++.+++.+++    ..+|.+.  ++++++||+||||||+.|.. |+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~  162 (475)
T PRK06327         83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPG  162 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCC
Confidence              0000000000            001  135788999998887    4566553  34689999999999999853 43


Q ss_pred             Ch--HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcE
Q 046865          118 TR--TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD  195 (369)
Q Consensus       118 ~~--~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~  195 (369)
                      .+  ...+.+..........+++++|+|+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.|+++||+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~  240 (475)
T PRK06327        163 VPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLD  240 (475)
T ss_pred             CCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcE
Confidence            32  11121222222222457999999999999999999874  489999999999999988999999999999999999


Q ss_pred             EEeCceeeeccCCCCCeEEEcCC--C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEE
Q 046865          196 VKLGQRVNLDSVSEGSDTYLTST--G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFA  271 (369)
Q Consensus       196 i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a  271 (369)
                      +++++.|.+++.+++.+.+.+.+  |  +++++|.+++|+|++|+++++..+.+++.++++|+|.||+++|| +.|+|||
T Consensus       241 i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA  319 (475)
T PRK06327        241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYA  319 (475)
T ss_pred             EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEE
Confidence            99999999987655555555443  3  47999999999999999987665556667888999999999998 7999999


Q ss_pred             ecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccccccc-----cCCCcEEEEeecCCCceE--------EcCcc--
Q 046865          272 IGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY-----WPHSAIAIVSLGRKDAVA--------QLPFM--  336 (369)
Q Consensus       272 ~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~-----~~~~~~~~v~lg~~~~~~--------~~~~~--  336 (369)
                      +|||+..+.  +++.|..||+++|.||.    +.+....+..     ..+|+++.+|+.++++..        .+++.  
T Consensus       320 ~GD~~~~~~--~~~~A~~~G~~aa~~i~----g~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~  393 (475)
T PRK06327        320 IGDVVRGPM--LAHKAEEEGVAVAERIA----GQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMAN  393 (475)
T ss_pred             EEeccCCcc--hHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEEEccccc
Confidence            999997543  78999999999999997    3221111111     126899999998766532        22321  


Q ss_pred             ---cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          337 ---TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       337 ---~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                         ...+...+++|+  ++++++++|||+|++|.||
T Consensus       394 ~~~~~~~~~~g~~kl--v~d~~~~~ilG~~~~g~~a  427 (475)
T PRK06327        394 GRALAMGEPDGFVKI--IADAKTDEILGVHVIGPNA  427 (475)
T ss_pred             chhhhcCCCCeEEEE--EEECCCCEEEEEEEECCCH
Confidence               134567899999  9999999999999999775

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.8e-46  Score=323.90  Aligned_cols=346  Identities=19%  Similarity=0.266  Sum_probs=270.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc--------------ccCC-cc------------c
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA--------------MVEP-SF------------G   63 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~--------------~~~~-~~------------~   63 (369)
                      ..+||+|||+||+|..||..++ .|++.++||++..+|..+.....              ..+. .+            .
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d  117 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD  117 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence            4699999999999999998765 69999999999887643221100              0000 00            0


Q ss_pred             ccceec------------cccccc--cceEEEeeeeeeecceEEec--CC--eEEeccEEEEccCCC-CCCCCCh--HHH
Q 046865           64 ERSVIN------------HTDYLV--NGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHK-DPVPKTR--TER  122 (369)
Q Consensus        64 ~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lviAtG~~-~~~p~~~--~~~  122 (369)
                      ......            +...++  ++.++.+...++++++|...  ||  ..+.++++++|||+. +.+|++.  .+.
T Consensus       118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk  197 (506)
T KOG1335|consen  118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK  197 (506)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence            000000            011121  46788999999999876543  44  578999999999995 7788853  333


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCcee
Q 046865          123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      +-+....+.....|++++|+|+|++|+|++..+.  +.|.+||+++-.+.+.+.+|.++++.+++.|++.|++++++++|
T Consensus       198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~--rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv  275 (506)
T KOG1335|consen  198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWS--RLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV  275 (506)
T ss_pred             EEecCCccchhhCcceEEEEcCceeeeehhhHHH--hcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence            3333334455567999999999999999999887  57999999999999999999999999999999999999999999


Q ss_pred             eeccCCCC-CeEEEcCC---C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccC
Q 046865          203 NLDSVSEG-SDTYLTST---G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDIT  276 (369)
Q Consensus       203 ~~i~~~~~-~~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~  276 (369)
                      ...+.+++ .+.+++.+   +  ++++||.+++++|++|.+..|..+.+++..|++|++.||..++| .+||||+|||+.
T Consensus       276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~  354 (506)
T KOG1335|consen  276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT  354 (506)
T ss_pred             EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence            99887655 55555432   2  47999999999999999999999999999999999999999999 699999999999


Q ss_pred             CccccchhHHHHHHHHHHHHHHHHHhhCCCc------cccccccCCCcEEEEeecCCCc--------eEEcCccc-----
Q 046865          277 DIREIKQGFLAQKHAQVAAKNLKVLMVGERE------SKMATYWPHSAIAIVSLGRKDA--------VAQLPFMT-----  337 (369)
Q Consensus       277 ~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~------~~~~~~~~~~~~~~v~lg~~~~--------~~~~~~~~-----  337 (369)
                      ..|+  ++|.|..||..+.+.|.    |...      .+...| .+|++++||.++.+.        ++.++|..     
T Consensus       355 ~gpM--LAhkAeeegI~~VE~i~----g~~~hv~ynciP~v~y-thPEvawVG~TEeqlkeegi~y~vgkfpF~aNsRak  427 (506)
T KOG1335|consen  355 LGPM--LAHKAEEEGIAAVEGIA----GGHGHVDYNCIPSVVY-THPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAK  427 (506)
T ss_pred             Ccch--hhhhhhhhchhheeeec----ccCcccccCCCCceee-cccceeeeccchhhHHhcCcceEeeeccccccchhh
Confidence            7765  79999999999998886    4321      112223 379999999965543        56777754     


Q ss_pred             ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          338 TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       338 ~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ......||+|.  +.++++.+|||+||+|.||
T Consensus       428 tn~d~eg~vKv--l~d~~tdkiLGvHiigp~A  457 (506)
T KOG1335|consen  428 TNNDTEGFVKV--LADKETDKILGVHIIGPNA  457 (506)
T ss_pred             ccCCccceeEE--EecCCCCcEEEEEEecCCH
Confidence            34567899999  9999999999999999986

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=5.8e-45  Score=346.67  Aligned_cols=343  Identities=20%  Similarity=0.257  Sum_probs=247.2

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcccc--cceecccccc--ccceEE-Eeeee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGE--RSVINHTDYL--VNGRIV-ASPAI   85 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~-~~~~~   85 (369)
                      ++|||||||+||+++|..|++   +.+|+|||+++++++....+.......+..  .......+.+  .+++++ ...+.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            379999999999999998864   569999999998765433333222211111  1111111111  256765 45777


Q ss_pred             eeec--ceEEecC---CeEEe--ccEEEEccCCCCCCCCChH---H------HHHHHHHHHHHH--hcCCeEEEEcCChh
Q 046865           86 NITE--NEVLTAE---GRRVV--YDYLVIATGHKDPVPKTRT---E------RLNQYQAENQKI--KSARSILIVGGGPT  147 (369)
Q Consensus        86 ~~~~--~~v~~~~---g~~~~--~d~lviAtG~~~~~p~~~~---~------~~~~~~~~~~~~--~~~~~v~vvG~G~~  147 (369)
                      .++.  +.+.+.+   +..+.  ||+||+|||++|..|+++.   .      .+.+.....+..  ..+++++|+|+|++
T Consensus        81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~  160 (444)
T PRK09564         81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFI  160 (444)
T ss_pred             EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHH
Confidence            7764  3555543   55666  9999999999976654321   1      122222222222  24689999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccE
Q 046865          148 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADC  226 (369)
Q Consensus       148 g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~  226 (369)
                      |+|+|..+.+  .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++++.+++.+++...+.+. +.++++|.
T Consensus       161 g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~  237 (444)
T PRK09564        161 GLEAVEAAKH--LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADV  237 (444)
T ss_pred             HHHHHHHHHh--cCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCE
Confidence            9999999874  5899999999998887 588999999999999999999999999998654333334444 45799999


Q ss_pred             EEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHHH
Q 046865          227 HFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKNL  298 (369)
Q Consensus       227 vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~i  298 (369)
                      +++|+|++|+++++...++  +++++|+|.||+++|| +.|||||+|||++.+.        +++++.|.+||+++|+||
T Consensus       238 vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni  314 (444)
T PRK09564        238 VIVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENL  314 (444)
T ss_pred             EEECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHh
Confidence            9999999999998876654  5677899999999998 7999999999997531        357889999999999999


Q ss_pred             HHHhhCCCccccccc------cCCCcEEEEeecCCCce--------EEcCcc----cccccccceecccccchHHHHHHc
Q 046865          299 KVLMVGERESKMATY------WPHSAIAIVSLGRKDAV--------AQLPFM----TTIGCVPGLIKSRDLFVGKTRKQM  360 (369)
Q Consensus       299 ~~~~~g~~~~~~~~~------~~~~~~~~v~lg~~~~~--------~~~~~~----~~~g~~~~~~k~~~~~~~~~~~il  360 (369)
                      +    |.+......+      ..+|+++.+|+.++++.        ..+...    ...+...+++|+  ++++++++||
T Consensus       315 ~----g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--v~~~~~~~il  388 (444)
T PRK09564        315 A----GRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKL--IYEADTKVIL  388 (444)
T ss_pred             c----CCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEE--EEECCCCeEE
Confidence            8    4322111001      13578999998776652        112111    124566789998  9999999999


Q ss_pred             CCCCCccC
Q 046865          361 GLEPDVAH  368 (369)
Q Consensus       361 G~~~~~~~  368 (369)
                      |+|++|.+
T Consensus       389 G~~~~g~~  396 (444)
T PRK09564        389 GGQIIGKK  396 (444)
T ss_pred             eEEEEcCc
Confidence            99999975

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=1.8e-45  Score=350.48  Aligned_cols=349  Identities=17%  Similarity=0.125  Sum_probs=249.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC--------Cccccccc--------cc-------------cc-cC--
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWAS--------LR-------------AM-VE--   59 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~--------~~~~~~~~--------~~-------------~~-~~--   59 (369)
                      +|||||||||+||+.||..++ .|.+|+|||+..        .+|..+..        +.             .+ +.  
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            589999999999999999987 599999999731        23332110        00             00 00  


Q ss_pred             C--ccccccee------------cccccc--ccceEEEeeeeeeecceEEec--CC--eEEeccEEEEccCCCCCCCCCh
Q 046865           60 P--SFGERSVI------------NHTDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKDPVPKTR  119 (369)
Q Consensus        60 ~--~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lviAtG~~~~~p~~~  119 (369)
                      .  .+......            .+...+  .+++++++++.+++++++...  ++  +++.||+||||||++|..|+++
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip  161 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP  161 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence            0  00000000            000111  268899999999999876653  33  4799999999999998877654


Q ss_pred             HH--HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEE
Q 046865          120 TE--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVK  197 (369)
Q Consensus       120 ~~--~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~  197 (369)
                      ..  ...+..........+++++|+|+|++|+|+|..|++  .+.+|+++++ +++++.+++++.+.+++.|+++||+++
T Consensus       162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~  238 (484)
T TIGR01438       162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK  238 (484)
T ss_pred             CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHH--hCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence            32  111222232333467899999999999999999985  4899999998 578899999999999999999999999


Q ss_pred             eCceeeeccCCCCCeEEEcCCC---cEEeccEEEEcCCCCCCchhhcccccCCCCCC-CCcEEeCCceeeccCCCeEEec
Q 046865          198 LGQRVNLDSVSEGSDTYLTSTG---DTIKADCHFLCTGKPVGSDWLKDTILKDSLDT-DGMLMVDENLRVKGQKNIFAIG  273 (369)
Q Consensus       198 ~~~~v~~i~~~~~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~-~g~i~vd~~l~~~~~~~i~a~G  273 (369)
                      +++.+.+++..++.+.+++.++   +++++|.+|+|+|++||++++.....++.+++ +|+|.||+++|| +.|+|||+|
T Consensus       239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G  317 (484)
T TIGR01438       239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG  317 (484)
T ss_pred             eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence            9998888765444555665555   37999999999999999998766666667765 489999999998 799999999


Q ss_pred             ccCCccccchhHHHHHHHHHHHHHHHHHhhCC-C--ccccccccCCCcEEEEeecCCCceEE----------cCccc---
Q 046865          274 DITDIREIKQGFLAQKHAQVAAKNLKVLMVGE-R--ESKMATYWPHSAIAIVSLGRKDAVAQ----------LPFMT---  337 (369)
Q Consensus       274 D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~-~--~~~~~~~~~~~~~~~v~lg~~~~~~~----------~~~~~---  337 (369)
                      ||+... +.+++.|.+||+++|+||+..-... .  ..+...| ..|+++.+|+++.++...          .++..   
T Consensus       318 Dv~~~~-~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~-~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~  395 (484)
T TIGR01438       318 DILEDK-QELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVF-TPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEW  395 (484)
T ss_pred             EecCCC-ccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEe-CCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhh
Confidence            999632 2367899999999999997311000 0  0011122 358999999987765432          11111   


Q ss_pred             --cc--ccccceecccccch-HHHHHHcCCCCCccCC
Q 046865          338 --TI--GCVPGLIKSRDLFV-GKTRKQMGLEPDVAHA  369 (369)
Q Consensus       338 --~~--g~~~~~~k~~~~~~-~~~~~ilG~~~~~~~~  369 (369)
                        ..  +...+++|+  +++ +++++|||+|++|.||
T Consensus       396 ~~~~~~~~~~g~~Kl--i~~~~~t~~ILG~~ivg~~a  430 (484)
T TIGR01438       396 TIPSRDNSNKCYAKA--VCNRKENERVVGFHVVGPNA  430 (484)
T ss_pred             HhhCCCccCCcEEEE--EEecCCCCeEEEEEEECCCH
Confidence              11  125689998  886 4699999999999775

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=2.7e-45  Score=350.42  Aligned_cols=345  Identities=21%  Similarity=0.281  Sum_probs=248.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc--------cc-------------c-cC---Cccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL--------RA-------------M-VE---PSFGER   65 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~--------~~-------------~-~~---~~~~~~   65 (369)
                      ..|||+||||||||++||.+|+ .|.+|+|||++ .+|..+...        ..             + +.   +.....
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA   81 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence            4799999999999999999986 59999999996 444332110        00             0 00   000100


Q ss_pred             ceec------------ccccc--ccceEEEeeeeeeecc-------e--EEecCC--eEEeccEEEEccCCCCCC-CCCh
Q 046865           66 SVIN------------HTDYL--VNGRIVASPAINITEN-------E--VLTAEG--RRVVYDYLVIATGHKDPV-PKTR  119 (369)
Q Consensus        66 ~~~~------------~~~~~--~~~~~~~~~~~~~~~~-------~--v~~~~g--~~~~~d~lviAtG~~~~~-p~~~  119 (369)
                      ....            ....+  .+++++.+++.+++.+       +  |.+.+|  .++.||+||||||++|.. |+.+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~  161 (472)
T PRK05976         82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP  161 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence            0000            00111  2689999999999876       4  444455  579999999999999864 4332


Q ss_pred             H--HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEE
Q 046865          120 T--ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVK  197 (369)
Q Consensus       120 ~--~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~  197 (369)
                      .  ..+.+..+.......+++++|||+|++|+|+|..|++  .+.+|+++++.+++++.+++++.+.+.+.|+++||+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~  239 (472)
T PRK05976        162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVV  239 (472)
T ss_pred             CCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEE
Confidence            1  1111222222222357899999999999999999984  48999999999999999999999999999999999999


Q ss_pred             eCceeeeccC--CCCCeEEEcCCCc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEec
Q 046865          198 LGQRVNLDSV--SEGSDTYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIG  273 (369)
Q Consensus       198 ~~~~v~~i~~--~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~G  273 (369)
                      +++.|.+++.  +++...+.+.+|+  ++++|.+|+|+|++|+++.+....+++.. ++|++.||+++|| +.|+|||+|
T Consensus       240 ~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiG  317 (472)
T PRK05976        240 TGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIG  317 (472)
T ss_pred             eCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEee
Confidence            9999998864  3332233445663  69999999999999998876544444433 4689999999998 689999999


Q ss_pred             ccCCccccchhHHHHHHHHHHHHHHHHHhhCCCcccc-cccc-----CCCcEEEEeecCCCce--------EEcCcc---
Q 046865          274 DITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKM-ATYW-----PHSAIAIVSLGRKDAV--------AQLPFM---  336 (369)
Q Consensus       274 D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~-~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~---  336 (369)
                      ||++.+  ++++.|..||+++|.||.    |.+..+. +...     .+|+++.+|+.+.++.        ...++.   
T Consensus       318 D~~~~~--~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~  391 (472)
T PRK05976        318 DVIGEP--QLAHVAMAEGEMAAEHIA----GKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANG  391 (472)
T ss_pred             ecCCCc--ccHHHHHHHHHHHHHHHc----CCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcch
Confidence            999754  468999999999999996    4321111 1111     2588999998765542        222221   


Q ss_pred             --cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          337 --TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       337 --~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                        ...+...+++|+  ++++++++|||+|++|.+|
T Consensus       392 ~~~~~~~~~g~~kl--i~d~~~~~ilG~~~~g~~a  424 (472)
T PRK05976        392 KALTYGESDGFVKV--VADRDTHDILGVQAVGPHV  424 (472)
T ss_pred             hhhhcCCCceEEEE--EEECCCCEEEEEEEECCCH
Confidence              234667899999  9999999999999999764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.9e-45  Score=346.62  Aligned_cols=342  Identities=22%  Similarity=0.233  Sum_probs=247.2

Q ss_pred             eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc-------cccccc-------------cc-c-----CCcccccce
Q 046865           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI-------TWASLR-------------AM-V-----EPSFGERSV   67 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~-------~~~~~~-------------~~-~-----~~~~~~~~~   67 (369)
                      +|+|||||+||++||..|+ .|.+|+|||+++..|-       |...+.             .+ +     .........
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM   81 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence            8999999999999999986 5999999999764321       111110             00 0     000111111


Q ss_pred             ecc------------ccc--cccceEEEeeeeeeecceEEe--cCC-eEEeccEEEEccCCCCCCCCCh---HHHHHHHH
Q 046865           68 INH------------TDY--LVNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPKTR---TERLNQYQ  127 (369)
Q Consensus        68 ~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~d~lviAtG~~~~~p~~~---~~~~~~~~  127 (369)
                      ..+            ...  ..+++++++++.+++++++..  +++ ++++||+||||||++|..|++.   ...+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~~  161 (458)
T PRK06912         82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSK  161 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcch
Confidence            100            001  126789999999999886544  344 4799999999999998655432   11112222


Q ss_pred             HHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccC
Q 046865          128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV  207 (369)
Q Consensus       128 ~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  207 (369)
                      ........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.|++.||++++++.+.+++.
T Consensus       162 ~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~  239 (458)
T PRK06912        162 HAMSLPSIPSSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNS  239 (458)
T ss_pred             HHhCccccCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence            222333457899999999999999999874  489999999999999999999999999999999999999999998875


Q ss_pred             CCCCeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhH
Q 046865          208 SEGSDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGF  285 (369)
Q Consensus       208 ~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~  285 (369)
                      ++..+.+.. +|  +++++|.+|+|+|++|+++.+.....++.++++| |.||+++|| +.|||||+|||++.+  ++++
T Consensus       240 ~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~--~la~  314 (458)
T PRK06912        240 YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGI--QLAH  314 (458)
T ss_pred             cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCc--ccHH
Confidence            444344433 34  3699999999999999998765444455666666 999999998 799999999999753  4789


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCccccccc-----cCCCcEEEEeecCCCceE--------EcCccc-----ccccccceec
Q 046865          286 LAQKHAQVAAKNLKVLMVGERESKMATY-----WPHSAIAIVSLGRKDAVA--------QLPFMT-----TIGCVPGLIK  347 (369)
Q Consensus       286 ~A~~~g~~~a~~i~~~~~g~~~~~~~~~-----~~~~~~~~v~lg~~~~~~--------~~~~~~-----~~g~~~~~~k  347 (369)
                      .|.+||+++|.||.    |.+....+..     ..+|+++.+|+++.++..        .+++..     ..+...|++|
T Consensus       315 ~A~~~g~~aa~~~~----g~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k  390 (458)
T PRK06912        315 VAFHEGTTAALHAS----GEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVK  390 (458)
T ss_pred             HHHHHHHHHHHHHc----CCCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEEE
Confidence            99999999999997    4321110111     125899999998766532        222211     3455788999


Q ss_pred             ccccchHHHHHHcCCCCCccCC
Q 046865          348 SRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       348 ~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +  ++++++++|||+|++|.||
T Consensus       391 l--i~d~~~~~ilG~~~~g~~a  410 (458)
T PRK06912        391 V--IVEPKYQEIVGISIIGPRA  410 (458)
T ss_pred             E--EEECCCCEEEEEEEECCCH
Confidence            9  9999999999999999875

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=7.1e-45  Score=348.00  Aligned_cols=345  Identities=20%  Similarity=0.170  Sum_probs=248.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC--------Cccccccc---ccc-------------------c-c--
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWAS---LRA-------------------M-V--   58 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~--------~~~~~~~~---~~~-------------------~-~--   58 (369)
                      .|||+||||||||++||..|+ .|.+|+|||+++        .+|..+..   +..                   + +  
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~   84 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT   84 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence            589999999999999999986 599999999632        24432110   000                   0 0  


Q ss_pred             CCcccccceecc------------ccc--cccceEEEeeeeeeecceEEecC---CeEEeccEEEEccCCCCCCCC-ChH
Q 046865           59 EPSFGERSVINH------------TDY--LVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPK-TRT  120 (369)
Q Consensus        59 ~~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~~---g~~~~~d~lviAtG~~~~~p~-~~~  120 (369)
                      ........+..+            ...  ..+++++++++.+.+.++|.+.+   +..++||+||||||+.|..|. ++.
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G  164 (499)
T PTZ00052         85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPG  164 (499)
T ss_pred             CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCC
Confidence            000110011000            000  13578888999888888776532   357999999999999987663 432


Q ss_pred             H--HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEe
Q 046865          121 E--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKL  198 (369)
Q Consensus       121 ~--~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~  198 (369)
                      .  ...+..........+++++|||+|++|+|+|..|+.  .+.+||++++. ++++.+++++.+.+++.|++.||++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~~  241 (499)
T PTZ00052        165 AKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFLE  241 (499)
T ss_pred             ccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEEc
Confidence            1  111222233333457899999999999999999984  48999999974 677889999999999999999999999


Q ss_pred             CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865          199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI  278 (369)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~  278 (369)
                      ++.+.+++..++...+.+.+|+++++|.||+++|++||++++....++++++++|++.++++ || +.|+|||+|||+..
T Consensus       242 ~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~~  319 (499)
T PTZ00052        242 GVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVEG  319 (499)
T ss_pred             CCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecCC
Confidence            99988876544455677778888999999999999999998865556667888898877777 87 79999999999853


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhCCCcc-cccccc-----CCCcEEEEeecCCCceEE----------cCccc-----
Q 046865          279 REIKQGFLAQKHAQVAAKNLKVLMVGERES-KMATYW-----PHSAIAIVSLGRKDAVAQ----------LPFMT-----  337 (369)
Q Consensus       279 ~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~-~~~~~~-----~~~~~~~v~lg~~~~~~~----------~~~~~-----  337 (369)
                      . +.+++.|.+||+++|+||.    +.... ..+...     ..|+++.+|+++.+|...          +++..     
T Consensus       320 ~-~~l~~~A~~~g~~aa~ni~----g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~  394 (499)
T PTZ00052        320 R-PELTPVAIKAGILLARRLF----KQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAA  394 (499)
T ss_pred             C-cccHHHHHHHHHHHHHHHh----CCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhc
Confidence            2 2468999999999999997    32211 111111     268999999987766422          11110     


Q ss_pred             ccc---------------cccceecccccchH-HHHHHcCCCCCccCC
Q 046865          338 TIG---------------CVPGLIKSRDLFVG-KTRKQMGLEPDVAHA  369 (369)
Q Consensus       338 ~~g---------------~~~~~~k~~~~~~~-~~~~ilG~~~~~~~~  369 (369)
                      ...               ...||+|+  ++++ ++++|||+|++|.||
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~~~~~IlG~~ivg~~A  440 (499)
T PTZ00052        395 VHREKHERARKDEYDFDVSSNCLAKL--VCVKSEDNKVVGFHFVGPNA  440 (499)
T ss_pred             cccccccccccccccccccCCceEEE--EEecCCCCEEEEEEEECCCH
Confidence            000               15789998  8887 589999999999886

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=4.4e-45  Score=348.96  Aligned_cols=349  Identities=23%  Similarity=0.291  Sum_probs=253.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc------------------c----cC---Ccccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA------------------M----VE---PSFGERS   66 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~------------------~----~~---~~~~~~~   66 (369)
                      .|||+|||||+||++||.+|+ .|.+|+|||+ +.+|..+.....                  .    +.   ..+....
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   79 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK   79 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence            389999999999999999997 5999999999 555543221100                  0    00   0000000


Q ss_pred             eeccc------------cc--cccceEEEeeeeeeecceEEec--CC-eEEeccEEEEccCCCCCCCCCh----HHHHHH
Q 046865           67 VINHT------------DY--LVNGRIVASPAINITENEVLTA--EG-RRVVYDYLVIATGHKDPVPKTR----TERLNQ  125 (369)
Q Consensus        67 ~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~~--~g-~~~~~d~lviAtG~~~~~p~~~----~~~~~~  125 (369)
                      .....            .+  ..+++++.+++.+++++.+...  ++ .++.||+||+|||++|..|+.+    ...+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~  159 (461)
T TIGR01350        80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT  159 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence            00000            00  1257888999888887755443  33 4799999999999998766543    111222


Q ss_pred             HHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       126 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.++
T Consensus       160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i  237 (461)
T TIGR01350       160 STGALNLKEVPESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV  237 (461)
T ss_pred             chHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            22222223457899999999999999999984  4899999999999999999999999999999999999999999988


Q ss_pred             cCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865          206 SVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ  283 (369)
Q Consensus       206 ~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~  283 (369)
                      +.+++.+.+.+.+|  +++++|.+|+|+|++|+++.+....+++.++++|++.||+++|+ +.|+|||+|||++.+  ++
T Consensus       238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~--~~  314 (461)
T TIGR01350       238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGGP--ML  314 (461)
T ss_pred             EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCCCc--cc
Confidence            76655666666666  47999999999999999884433444457788899999999998 799999999999754  37


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCC--ccccccccCCCcEEEEeecCCCce--------EEcCcc-----cccccccceecc
Q 046865          284 GFLAQKHAQVAAKNLKVLMVGER--ESKMATYWPHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLIKS  348 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~~~g~~--~~~~~~~~~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~k~  348 (369)
                      ++.|.+||+.+|+||...-....  ...+.....+|+++.+|+.+.++.        ...++.     ...+...+++|+
T Consensus       315 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl  394 (461)
T TIGR01350       315 AHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKI  394 (461)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEE
Confidence            89999999999999973211000  001111112588999998765443        222221     124567899999


Q ss_pred             cccchHHHHHHcCCCCCccCC
Q 046865          349 RDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       349 ~~~~~~~~~~ilG~~~~~~~~  369 (369)
                        ++++++++|||+|++|.+|
T Consensus       395 --~~~~~~~~ilG~~~~g~~a  413 (461)
T TIGR01350       395 --IADKKTGEILGAHIIGPHA  413 (461)
T ss_pred             --EEECCCCEEEEEEEECCCH
Confidence              9999999999999999764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=9.5e-44  Score=329.89  Aligned_cols=326  Identities=26%  Similarity=0.412  Sum_probs=247.9

Q ss_pred             eEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCccc-ccceecccccc--ccceEEEeeeeee
Q 046865           15 RVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVINHTDYL--VNGRIVASPAINI   87 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~   87 (369)
                      +|||||||+||+.+|.+|+    ++.+|+|||+++++.+.+. +..+...... .....+..+++  .+++|+.+++..+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence            5899999999999999884    3689999999988665432 2222211111 11222333332  2688999999999


Q ss_pred             ec--ceEEecCCeEEeccEEEEccCCCCCCCCChH--------HHHHHHHH----HHHHH---hcCCeEEEEcCChhHHH
Q 046865           88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT--------ERLNQYQA----ENQKI---KSARSILIVGGGPTGVE  150 (369)
Q Consensus        88 ~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~--------~~~~~~~~----~~~~~---~~~~~v~vvG~G~~g~e  150 (369)
                      |.  ++|.+.+|++++||+||||||+.+..|.++.        ..+.++..    .....   ...++++|+|+|++|+|
T Consensus        80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E  159 (364)
T TIGR03169        80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE  159 (364)
T ss_pred             ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence            85  4788888889999999999999977665432        11111111    22222   23579999999999999


Q ss_pred             HHHHHhhhCC--C--CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccE
Q 046865          151 LAGEIAVDFP--E--KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADC  226 (369)
Q Consensus       151 ~a~~l~~~~~--~--~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~  226 (369)
                      +|..|.+.++  +  .+|+++ +.+.+++.+++++.+.+++.|+++||++++++.+.+++.+    .+.+.+|+++++|.
T Consensus       160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~  234 (364)
T TIGR03169       160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG----ALILADGRTLPADA  234 (364)
T ss_pred             HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC----eEEeCCCCEEecCE
Confidence            9999975332  2  589999 6677888888899999999999999999999999988532    46777888999999


Q ss_pred             EEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc---ccchhHHHHHHHHHHHHHHHHHhh
Q 046865          227 HFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR---EIKQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       227 vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~---~~~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      +|+|+|.+|++ ++...++  .++++|++.||+++|++++|||||+|||+..+   .++.+..|++||+++|+||.+.+.
T Consensus       235 vi~a~G~~p~~-~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~  311 (364)
T TIGR03169       235 ILWATGARAPP-WLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR  311 (364)
T ss_pred             EEEccCCChhh-HHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence            99999999985 4444443  56788999999999987899999999999643   356788999999999999999998


Q ss_pred             CCCccccccccCC-CcEEEEeecCCCceEEcCcccccccccceecccccchH
Q 046865          304 GERESKMATYWPH-SAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVG  354 (369)
Q Consensus       304 g~~~~~~~~~~~~-~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k~~~~~~~  354 (369)
                      |++   +.+|+|. ...+++++|...++.+.+.+.+.|++.+++|.  .+.+
T Consensus       312 g~~---~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~~k~--~~~~  358 (364)
T TIGR03169       312 GQP---LRPFRPQRDYLQLLNTGDRRAVASWGWIIGPGRWLWRLKD--WIDR  358 (364)
T ss_pred             CCC---CCCCcccccceeEEEcCCCcEEEeecceeecCccHHHHHH--HHhH
Confidence            865   3466663 45688999999999888777788999999996  4443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=1.7e-43  Score=353.52  Aligned_cols=342  Identities=17%  Similarity=0.208  Sum_probs=250.3

Q ss_pred             cceEEEECCChHHHHHHHHcc-----cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEee-e
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVASP-A   84 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~   84 (369)
                      +++|||||+|+||+.+|..|+     .+++|+||++++++.+....+..++.............+++  .+++++.++ +
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            458999999999999998874     25899999999988776655544443322212222222232  267887764 6


Q ss_pred             eeeecc--eEEecCCeEEeccEEEEccCCCCCCCCChH---------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865           85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------ERLNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (369)
Q Consensus        85 ~~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~  153 (369)
                      ..+|..  .|.+.+|.+++||+||||||+.|.+|+++.         ..+.+...+......+++++|||+|++|+|+|.
T Consensus        83 ~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~  162 (847)
T PRK14989         83 ITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG  162 (847)
T ss_pred             EEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHH
Confidence            777754  677778889999999999999987665432         133444444455567899999999999999999


Q ss_pred             HHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC--CCeEEEcCCCcEEeccEEEEc
Q 046865          154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GSDTYLTSTGDTIKADCHFLC  230 (369)
Q Consensus       154 ~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~d~vi~a  230 (369)
                      .|.+  .+.+|+++++.+++++ .++++..+.+++.|+++||++++++.+.++..++  ....+.+.+|+++++|.||+|
T Consensus       163 ~L~~--~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A  240 (847)
T PRK14989        163 ALKN--LGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS  240 (847)
T ss_pred             HHHH--cCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEEC
Confidence            9985  4899999999999887 6899999999999999999999999999886432  244677889999999999999


Q ss_pred             CCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc--chhHHHHHHHHHHHHHHHHHhhCCCcc
Q 046865          231 TGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI--KQGFLAQKHAQVAAKNLKVLMVGERES  308 (369)
Q Consensus       231 ~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~--~~~~~A~~~g~~~a~~i~~~~~g~~~~  308 (369)
                      +|.+||++++...++  .++++|+|.||++||| +.|||||+|||+.....  .+.+.|.+||+++|.||+    |.+. 
T Consensus       241 ~G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~----g~~~-  312 (847)
T PRK14989        241 TGIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLL----GSEN-  312 (847)
T ss_pred             CCcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhc----CCCc-
Confidence            999999987765554  6788899999999998 79999999999977432  356789999999999997    5431 


Q ss_pred             ccccccCCC-c-----EEEEeecCCCceEEc-Cccc-ccccccceecccccchHHHHHHcCCCCCcc
Q 046865          309 KMATYWPHS-A-----IAIVSLGRKDAVAQL-PFMT-TIGCVPGLIKSRDLFVGKTRKQMGLEPDVA  367 (369)
Q Consensus       309 ~~~~~~~~~-~-----~~~v~lg~~~~~~~~-~~~~-~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~  367 (369)
                       .+.....+ .     +-+.+.|...+...- .... ..+...++.|+  ++++++++|||++++|-
T Consensus       313 -~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~~~~~y~Kl--v~~~~~~~LlGa~lvGd  376 (847)
T PRK14989        313 -AFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRL--IVSEDNKTLLGAVLVGD  376 (847)
T ss_pred             -CCCCcccceEEEECCcceEecccccCCCCCceeEEEEcCCCCEEEEE--EEECCCCEEEEEEEECC
Confidence             11211111 0     111222311111000 0011 12233568888  99999999999999984

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6.1e-43  Score=299.54  Aligned_cols=347  Identities=21%  Similarity=0.237  Sum_probs=264.8

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-------cc-------ccc------------cCCccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-------SL-------RAM------------VEPSFG   63 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-------~~-------~~~------------~~~~~~   63 (369)
                      ...+|.+|||||.+|+++|++++ .|.++.|+|..-.+|..+-       .+       ...            ...++.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd   97 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD   97 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence            45799999999999999999886 5999999997633332110       00       000            011111


Q ss_pred             ccceeccc------------ccc--ccceEEEeeeeeeecc--eEEecCCe--EEeccEEEEccCCCCCCCCChHHHH-H
Q 046865           64 ERSVINHT------------DYL--VNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPKTRTERL-N  124 (369)
Q Consensus        64 ~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~--~v~~~~g~--~~~~d~lviAtG~~~~~p~~~~~~~-~  124 (369)
                      +..+..-+            +.+  .+++++.+++.++++.  .|...++.  .+++.+++||||.+|.+|.++...+ .
T Consensus        98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gi  177 (478)
T KOG0405|consen   98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGI  177 (478)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhcc
Confidence            11111111            111  2578899999999887  45555664  3788999999999988887664432 2


Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      +.+...+....|++++|+|+|++++|+|..++  ..|++++++.|.+.+|..||+.+++.+.+.++..||++|+++.+++
T Consensus       178 dSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~--gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~  255 (478)
T KOG0405|consen  178 DSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFA--GLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTK  255 (478)
T ss_pred             ccccccchhhcCceEEEEccceEEEEhhhHHh--hcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeeccccccee
Confidence            23334445567999999999999999999998  5799999999999999999999999999999999999999999998


Q ss_pred             ccCCCC-CeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865          205 DSVSEG-SDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ  283 (369)
Q Consensus       205 i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~  283 (369)
                      +...++ ...+....|..-.+|.++||+|+.||+..|..++++++++++|.|.||+|.+| +.|+||++||+++.-.  +
T Consensus       256 v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk~~--L  332 (478)
T KOG0405|consen  256 VIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGKIN--L  332 (478)
T ss_pred             eeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCcEe--c
Confidence            876544 35566666754559999999999999999999999999999999999999998 8999999999998654  5


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcccccccc-------CCCcEEEEeecCCCceEEcCccc--------------ccc-c
Q 046865          284 GFLAQKHAQVAAKNLKVLMVGERESKMATYW-------PHSAIAIVSLGRKDAVAQLPFMT--------------TIG-C  341 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-------~~~~~~~v~lg~~~~~~~~~~~~--------------~~g-~  341 (369)
                      ...|...|+.+++.+...   ....++ +|.       .+|++..|||++.+|+-++....              +.+ .
T Consensus       333 TPVAiaagr~la~rlF~~---~~~~kl-dY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k  408 (478)
T KOG0405|consen  333 TPVAIAAGRKLANRLFGG---GKDTKL-DYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRK  408 (478)
T ss_pred             chHHHhhhhhHHHHhhcC---CCCCcc-ccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCC
Confidence            789999999999988732   222222 332       26889999999999876663211              222 3


Q ss_pred             ccceecccccchHHHHHHcCCCCCccC
Q 046865          342 VPGLIKSRDLFVGKTRKQMGLEPDVAH  368 (369)
Q Consensus       342 ~~~~~k~~~~~~~~~~~ilG~~~~~~~  368 (369)
                      .+.++|+  ++..++.+++|+|+.|..
T Consensus       409 ~kt~mKl--vc~~~~eKVvG~hm~G~~  433 (478)
T KOG0405|consen  409 EKTLMKL--VCAGKSEKVVGVHMCGDD  433 (478)
T ss_pred             cceEEEE--EEecCCCcEEEEEEecCC
Confidence            4567888  999999999999998854

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=1.8e-41  Score=317.25  Aligned_cols=279  Identities=20%  Similarity=0.262  Sum_probs=211.2

Q ss_pred             cceEEEECCChHHHHHHHHccc-C--CcEEEEcCCCCcccccccccc-ccCCcccccceecccccc--ccceEEEe-eee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRA-MVEPSFGERSVINHTDYL--VNGRIVAS-PAI   85 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g--~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~   85 (369)
                      +++|||||||+||++||..|++ +  .+|+||++++++.+....+.. ++.............+++  .+++++.+ .+.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            4689999999999999999974 3  589999999877654333321 221111111111112222  36787766 466


Q ss_pred             eeec--ceEEecCCeEEeccEEEEccCCCCCCCCCh---H------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHH
Q 046865           86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR---T------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (369)
Q Consensus        86 ~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~---~------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~  154 (369)
                      .+|.  +.+.+.+|.++.||+||||||+.|..|+..   .      ..+.+...+.+....+++++|+|+|++|+|+|..
T Consensus        83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~  162 (396)
T PRK09754         83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS  162 (396)
T ss_pred             EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence            7765  467788888999999999999997654321   1      1133444444455668999999999999999999


Q ss_pred             HhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          155 IAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       155 l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      |.+  .+.+|+++++.+++++. +++.+.+.+.+.++++||++++++.+.+++. ++.+.+.+.+|+++++|.+|+++|.
T Consensus       163 l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~  239 (396)
T PRK09754        163 ATQ--RRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI  239 (396)
T ss_pred             HHH--cCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence            984  48999999999998874 6778889999999999999999999998865 3455677888999999999999999


Q ss_pred             CCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc-------chhHHHHHHHHHHHHHHH
Q 046865          234 PVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI-------KQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       234 ~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~-------~~~~~A~~~g~~~a~~i~  299 (369)
                      +||+.++...++  ..  +++|.||++||| +.|||||+|||+..+.+       .+.+.|.+||++||+||+
T Consensus       240 ~pn~~l~~~~gl--~~--~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~  307 (396)
T PRK09754        240 SANDQLAREANL--DT--ANGIVIDEACRT-CDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAML  307 (396)
T ss_pred             ChhhHHHHhcCC--Cc--CCCEEECCCCcc-CCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhc
Confidence            999887765444  33  356999999998 79999999999964321       345789999999999998

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=2.3e-40  Score=308.10  Aligned_cols=337  Identities=21%  Similarity=0.288  Sum_probs=236.2

Q ss_pred             cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccccccee--cccccc--ccceEEE-eee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGERSVI--NHTDYL--VNGRIVA-SPA   84 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~-~~~   84 (369)
                      +++|||||||+||+++|..|++   +.+|+||+++++..+....+..............  ...+++  .+++++. .++
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V   81 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWV   81 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence            3699999999999999999863   6899999998865543333322222221111111  122222  2577764 467


Q ss_pred             eeeecc--eEEecCCeEEeccEEEEccCCCCCCCCChH-------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHH
Q 046865           85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI  155 (369)
Q Consensus        85 ~~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l  155 (369)
                      ..++..  .+.+ ++..+.||+||+|||+.|..|+++.       ..+.++..........++++|+|+|++|+|+|..|
T Consensus        82 ~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L  160 (377)
T PRK04965         82 TDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDL  160 (377)
T ss_pred             EEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence            777753  4554 6778999999999999987666432       12334444444556788999999999999999999


Q ss_pred             hhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          156 AVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       156 ~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .+  .+.+|+++++.+++++. +++++.+.+++.+++.||++++++.+.+++.+++...+.+.+|+++++|.+|+|+|.+
T Consensus       161 ~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~  238 (377)
T PRK04965        161 CR--AGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR  238 (377)
T ss_pred             Hh--cCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence            84  48999999999998875 5778899999999999999999999999876655666778889999999999999999


Q ss_pred             CCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--cchhHHHHHHHHHHHHHHHHHhhCCCcccccc
Q 046865          235 VGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--IKQGFLAQKHAQVAAKNLKVLMVGERESKMAT  312 (369)
Q Consensus       235 p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~  312 (369)
                      |+++++...++  ..+ +| +.||++||| +.|||||+|||+..+.  ......|.+||+++|+||+    |.+..  +.
T Consensus       239 p~~~l~~~~gl--~~~-~g-i~vd~~l~t-s~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~----g~~~~--~~  307 (377)
T PRK04965        239 PNTALARRAGL--AVN-RG-IVVDSYLQT-SAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLL----GQNTP--LK  307 (377)
T ss_pred             cchHHHHHCCC--CcC-CC-EEECCCccc-CCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhc----CCCcc--cc
Confidence            99988766554  343 45 999999998 7999999999997532  1245668999999999998    43321  11


Q ss_pred             ccC------CCcEEEEeecCCCceEEcCcccccccccceecccccchHHHHHHcCCCCCccC
Q 046865          313 YWP------HSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAH  368 (369)
Q Consensus       313 ~~~------~~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~  368 (369)
                      ..+      .+.+-++++|....-.  ..+.......++.+.  ++. +++++.|+..+|-+
T Consensus       308 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~--~~~-~~~~l~g~~~~g~~  364 (377)
T PRK04965        308 LPAMLVKVKTPELPLQLAGETQRQD--LRWQINAESQGMVAK--GVD-EAGQLRAFVVSEDR  364 (377)
T ss_pred             cCCccEEEecCceeeEECCCCCCCC--ceEEEEeCCCCeEEE--EEc-cCCcEEEEEEEChh
Confidence            111      1223344455432211  112222223454443  444 45889998877643

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=100.00  E-value=1.8e-39  Score=286.02  Aligned_cols=321  Identities=31%  Similarity=0.417  Sum_probs=231.1

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccc----cccceEEEee
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDY----LVNGRIVASP   83 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   83 (369)
                      ...++++|||+|+|++|.+.++.|. ..++|++|++++||.+.|......+..--......+....    -.++.+++++
T Consensus        51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe  130 (491)
T KOG2495|consen   51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE  130 (491)
T ss_pred             CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc
Confidence            3456899999999999999999996 5899999999999998776543332211111111111111    1256788888


Q ss_pred             eeeeecc--eE----EecCC----eEEeccEEEEccCCCCC---CCCChH-----HHHHHHHHH----------------
Q 046865           84 AINITEN--EV----LTAEG----RRVVYDYLVIATGHKDP---VPKTRT-----ERLNQYQAE----------------  129 (369)
Q Consensus        84 ~~~~~~~--~v----~~~~g----~~~~~d~lviAtG~~~~---~p~~~~-----~~~~~~~~~----------------  129 (369)
                      ...+|+.  .|    .+.++    ..+.|||||+|+|+.+.   +|+...     ..+++..+.                
T Consensus       131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l  210 (491)
T KOG2495|consen  131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGL  210 (491)
T ss_pred             cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Confidence            8888864  33    23344    47899999999999965   454321     111111111                


Q ss_pred             -HHHHhcCCeEEEEcCChhHHHHHHHHhhh--------CC----CCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEE
Q 046865          130 -NQKIKSARSILIVGGGPTGVELAGEIAVD--------FP----EKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDV  196 (369)
Q Consensus       130 -~~~~~~~~~v~vvG~G~~g~e~a~~l~~~--------~~----~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i  196 (369)
                       .++.+.-.+++||||||+|+|+|.+|.+.        +|    ..+||+++..+.+|+.|+..+.+..++.+.+.||++
T Consensus       211 ~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~  290 (491)
T KOG2495|consen  211 SDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDL  290 (491)
T ss_pred             ChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhcccee
Confidence             11234457899999999999999999862        22    468999999999999999999999999999999999


Q ss_pred             EeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCC--cEEeCCceeeccCCCeEEe
Q 046865          197 KLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDG--MLMVDENLRVKGQKNIFAI  272 (369)
Q Consensus       197 ~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g--~i~vd~~l~~~~~~~i~a~  272 (369)
                      .+++.|..+.  +..+.+...+|  ++|++..++|+||..|.+ +......  ..++.|  .+.||++||.++.+||||+
T Consensus       291 ~~~t~Vk~V~--~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp-~~k~lm~--~i~e~~rr~L~vDE~LrV~G~~nvfAi  365 (491)
T KOG2495|consen  291 DTGTMVKKVT--EKTIHAKTKDGEIEEIPYGLLVWATGNGPRP-VIKDLMK--QIDEQGRRGLAVDEWLRVKGVKNVFAI  365 (491)
T ss_pred             ecccEEEeec--CcEEEEEcCCCceeeecceEEEecCCCCCch-hhhhHhh--cCCccCceeeeeeceeeccCcCceEEe
Confidence            9999998875  33455555666  489999999999998743 2222221  334444  8999999999999999999


Q ss_pred             cccCCcccc-chhHHHHHHHHHHHHHHHHHhhCCCc---cc----------cccccCCCcEEEEeecCCCceEEcC
Q 046865          273 GDITDIREI-KQGFLAQKHAQVAAKNLKVLMVGERE---SK----------MATYWPHSAIAIVSLGRKDAVAQLP  334 (369)
Q Consensus       273 GD~~~~~~~-~~~~~A~~~g~~~a~~i~~~~~g~~~---~~----------~~~~~~~~~~~~v~lg~~~~~~~~~  334 (369)
                      |||+..+.. ++++.|.+||.++|+|+....++...   +.          ..+|.-....+++.+|..+++++++
T Consensus       366 GDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~  441 (491)
T KOG2495|consen  366 GDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLP  441 (491)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCc
Confidence            999965544 48999999999999999766543221   00          1223222345888999999999887

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=1.2e-38  Score=319.26  Aligned_cols=277  Identities=17%  Similarity=0.258  Sum_probs=216.7

Q ss_pred             EEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCccc-ccceecccccc--ccceEEEe-eeeee
Q 046865           16 VVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVINHTDYL--VNGRIVAS-PAINI   87 (369)
Q Consensus        16 vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~   87 (369)
                      |||||||+||+++|.+|+    .+++|+|||+++++.+....+..+...... ........+++  .+++++.+ .++.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            699999999999998774    367999999999887665444444332221 11222233333  26788765 57777


Q ss_pred             ec--ceEEecCCeEEeccEEEEccCCCCCCCCChH---------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHh
Q 046865           88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA  156 (369)
Q Consensus        88 ~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~  156 (369)
                      |.  +.|.+.+|.++.||+||+|||+.|..|+++.         ..+.+...+.+.....++++|||+|++|+|+|..|.
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~  160 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ  160 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence            75  4788888889999999999999987665432         123344444445567899999999999999999998


Q ss_pred             hhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          157 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       157 ~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      +  .+.+|+++++.+++++ .+++...+.+++.++++||++++++.+.++..++....+++++|+++++|.||+++|.+|
T Consensus       161 ~--~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       161 N--LGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             h--cCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            5  4899999999999887 578899999999999999999999999888655445567888999999999999999999


Q ss_pred             CchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc--chhHHHHHHHHHHHHHHH
Q 046865          236 GSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI--KQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       236 ~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~--~~~~~A~~~g~~~a~~i~  299 (369)
                      +++++...++  ..+  |.|.||++||| +.|||||+|||+..+..  .+...|.+||+++|.||+
T Consensus       239 n~~la~~~gl--~~~--ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~  299 (785)
T TIGR02374       239 NDELAVSAGI--KVN--RGIIVNDSMQT-SDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHIC  299 (785)
T ss_pred             CcHHHHhcCC--ccC--CCEEECCCccc-CCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhc
Confidence            9998766555  343  67999999998 79999999999976442  245568899999999997

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=2.9e-38  Score=299.00  Aligned_cols=329  Identities=21%  Similarity=0.323  Sum_probs=235.7

Q ss_pred             HHHHHccc---CCcEEEEcCCCCccccccccccccCCcccc-cceecc--cccc--ccceEE-Eeeeeeeec--ceEEec
Q 046865           27 LVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGE-RSVINH--TDYL--VNGRIV-ASPAINITE--NEVLTA   95 (369)
Q Consensus        27 ~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~-~~~~~~~~~--~~v~~~   95 (369)
                      +||++|++   +.+|+|||+++++.+.+..+..+....... .....+  ..++  .+++++ ...+..++.  +++.+.
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~   80 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR   80 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence            36777753   689999999998876554444333222221 111111  1221  256764 567777774  355443


Q ss_pred             C---CeEEe--ccEEEEccCCCCCCCCChH---H------HHHHHHHHHHHH--hcCCeEEEEcCChhHHHHHHHHhhhC
Q 046865           96 E---GRRVV--YDYLVIATGHKDPVPKTRT---E------RLNQYQAENQKI--KSARSILIVGGGPTGVELAGEIAVDF  159 (369)
Q Consensus        96 ~---g~~~~--~d~lviAtG~~~~~p~~~~---~------~~~~~~~~~~~~--~~~~~v~vvG~G~~g~e~a~~l~~~~  159 (369)
                      +   ++++.  ||+||||||++|..|+++.   .      .+.+........  ..+++++|+|+|++|+|+|..|++  
T Consensus        81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~--  158 (427)
T TIGR03385        81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE--  158 (427)
T ss_pred             ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh--
Confidence            2   35677  9999999999987665432   1      122222222222  357899999999999999999884  


Q ss_pred             CCCeEEEEEcCcccc-ccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          160 PEKKVTLVHKGSRLL-EFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       160 ~~~~v~lv~~~~~~l-~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .+.+|+++++.+.++ +.+++++.+.+.+.|++.||++++++.+.++..++ .+ +.+.+|+++++|.+|+|+|++|+++
T Consensus       159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPNSE  236 (427)
T ss_pred             CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCCHH
Confidence            488999999998874 67888999999999999999999999999987543 23 4567788999999999999999999


Q ss_pred             hhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHHHHHHhhCCCcccc
Q 046865          239 WLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKNLKVLMVGERESKM  310 (369)
Q Consensus       239 ~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~  310 (369)
                      ++...++  .++++|+|.||+++|| +.|+|||+|||+..+.        .++++.|.+||+++|+||.    |.+....
T Consensus       237 ~l~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~----g~~~~~~  309 (427)
T TIGR03385       237 LAKDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA----GNDIEFK  309 (427)
T ss_pred             HHHhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc----CCCCCCC
Confidence            8866554  6778899999999998 7999999999997432        3478899999999999997    4321110


Q ss_pred             -cccc-----CCCcEEEEeecCCCce--------EEcCcc----cccccccceecccccchHHHHHHcCCCCCccC
Q 046865          311 -ATYW-----PHSAIAIVSLGRKDAV--------AQLPFM----TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAH  368 (369)
Q Consensus       311 -~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~----~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~  368 (369)
                       ....     ..|+++.+|+++.++.        ..+...    ...+...+++|+  ++++++++|||+|++|.+
T Consensus       310 ~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~~~~~~~ilG~~~~g~~  383 (427)
T TIGR03385       310 GVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKL--IYEKDTRRILGAQAVGKE  383 (427)
T ss_pred             CcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEE--EEECCCCeEEEEEEEccc
Confidence             0011     2588999998766442        222211    124566789998  999999999999999987

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=5.1e-36  Score=271.13  Aligned_cols=274  Identities=23%  Similarity=0.303  Sum_probs=194.6

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccc-cCCcccc----cce-ecccccc--ccceEEEeee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-VEPSFGE----RSV-INHTDYL--VNGRIVASPA   84 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~-~~~~~~~----~~~-~~~~~~~--~~~~~~~~~~   84 (369)
                      +||+|||||+||++||..|+ .|.+|+|||+++. +..+...... .-+.+..    ..+ ....+.+  .+++++...+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v   79 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV   79 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence            68999999999999999986 5999999999863 3211110000 0011110    000 1111111  1567766777


Q ss_pred             eeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHHH------HHHHHHHHHHhcCCeEEEEcCChhHHHHHHH
Q 046865           85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL------NQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (369)
Q Consensus        85 ~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~------~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~  154 (369)
                      ..++..    .+.+.++.++.||+||+|||+.|..|+++....      ............+++++|+|+|++|+|+|..
T Consensus        80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~  159 (300)
T TIGR01292        80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY  159 (300)
T ss_pred             EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence            777654    456667788999999999999987665542210      0000111223457899999999999999999


Q ss_pred             HhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcC---CC--cEEeccEEE
Q 046865          155 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTS---TG--DTIKADCHF  228 (369)
Q Consensus       155 l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~~i~~d~vi  228 (369)
                      |.+  .+.+|+++++.+.+.      ....+.+.++++ ||++++++.+.+++.++....+++.   ++  +++++|.+|
T Consensus       160 l~~--~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi  231 (300)
T TIGR01292       160 LTR--IAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF  231 (300)
T ss_pred             HHh--hcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence            984  389999999987652      244566777777 9999999999988754432233331   23  579999999


Q ss_pred             EcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHH
Q 046865          229 LCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       229 ~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~  301 (369)
                      +|+|++|+.+++... +  .++++|++.||+++++ ++||||++|||++. .++.+..|+.||+.||.+|.+.
T Consensus       232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~  299 (300)
T TIGR01292       232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAERY  299 (300)
T ss_pred             EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHhh
Confidence            999999999888765 3  5678899999999998 89999999999974 2346789999999999999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.6e-37  Score=261.64  Aligned_cols=349  Identities=18%  Similarity=0.174  Sum_probs=247.3

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcC---CCCccccccc-------------------------------
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP---KEYFEITWAS-------------------------------   53 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~---~~~~~~~~~~-------------------------------   53 (369)
                      ..+..||++|||||.+||+||++++ .|.+|.++|-   .+ .|..|..                               
T Consensus        15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP-~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~ky   93 (503)
T KOG4716|consen   15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTP-QGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKY   93 (503)
T ss_pred             cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCC-CCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhh
Confidence            3456899999999999999999987 5999999983   22 2211210                               


Q ss_pred             ---------------cccccCCcccccceeccccc-cccceEEEeeeeeeecceEEec--CC--eEEeccEEEEccCCCC
Q 046865           54 ---------------LRAMVEPSFGERSVINHTDY-LVNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKD  113 (369)
Q Consensus        54 ---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~--~g--~~~~~d~lviAtG~~~  113 (369)
                                     +...++..+.........++ -+.+.+++....++|++++...  ++  +.+++++++||||.+|
T Consensus        94 GW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP  173 (503)
T KOG4716|consen   94 GWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP  173 (503)
T ss_pred             CCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence                           00000000000000000000 1245667788888888866443  33  4689999999999999


Q ss_pred             CCCCChHH--HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh
Q 046865          114 PVPKTRTE--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS  191 (369)
Q Consensus       114 ~~p~~~~~--~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~  191 (369)
                      +.|+++..  .-.+.+++......|.+-+|||+|++++|+|.+|+  ..|.+||+..|+ -+|..||.++++.+.+.+++
T Consensus       174 rYp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~--gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~  250 (503)
T KOG4716|consen  174 RYPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLK--GFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEE  250 (503)
T ss_pred             CCCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHh--hcCCCcEEEEEE-eecccccHHHHHHHHHHHHH
Confidence            98887642  11233444445567888899999999999999998  568999999887 47789999999999999999


Q ss_pred             CCcEEEeCceeeeccCCC-CCeEEEcC---CCc--EEeccEEEEcCCCCCCchhhcccccCCCCC-CCCcEEeCCceeec
Q 046865          192 KKVDVKLGQRVNLDSVSE-GSDTYLTS---TGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLD-TDGMLMVDENLRVK  264 (369)
Q Consensus       192 ~gv~i~~~~~v~~i~~~~-~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~-~~g~i~vd~~l~~~  264 (369)
                      +||++...+...+++..+ +...|...   .++  +-++|.|+||.|+.++++-+....+++..+ ..|.|.+|+.-+| 
T Consensus       251 ~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-  329 (503)
T KOG4716|consen  251 RGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-  329 (503)
T ss_pred             hCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-
Confidence            999999998877777544 34444322   222  457999999999999999998888888775 4688999999888 


Q ss_pred             cCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCcc------ccccccCCCcEEEEeecCCCceEEcCcc--
Q 046865          265 GQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERES------KMATYWPHSAIAIVSLGRKDAVAQLPFM--  336 (369)
Q Consensus       265 ~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~------~~~~~~~~~~~~~v~lg~~~~~~~~~~~--  336 (369)
                      +.|+|||+||+.... +.+...|++.|+.+|+.|..   |....      +...|.| -+.+++||.+..|+..+...  
T Consensus       330 ~vp~vyAvGDIl~~k-pELTPvAIqsGrlLa~Rlf~---gs~q~~dy~~V~TTVFTP-LEy~c~GlsEE~Ai~k~g~dni  404 (503)
T KOG4716|consen  330 NVPYVYAVGDILEDK-PELTPVAIQSGRLLARRLFA---GSTQLMDYDDVATTVFTP-LEYGCVGLSEEDAIEKYGEDNI  404 (503)
T ss_pred             CCCceEEecceecCC-cccchhhhhhchHHHHHHhc---CcceeeeccCCceeeecc-hhccccCCCHHHHHHHhCcccE
Confidence            799999999998653 34678999999999999973   22111      1123333 46788999888776543221  


Q ss_pred             ------------ccc--ccccceecccccchH-HHHHHcCCCCCccCC
Q 046865          337 ------------TTI--GCVPGLIKSRDLFVG-KTRKQMGLEPDVAHA  369 (369)
Q Consensus       337 ------------~~~--g~~~~~~k~~~~~~~-~~~~ilG~~~~~~~~  369 (369)
                                  .+.  +....++|.  ++.+ +..+++|.|++|.+|
T Consensus       405 evfH~~f~P~E~~ipqrd~~~CY~K~--vc~r~~~qkv~G~H~lgPnA  450 (503)
T KOG4716|consen  405 EVFHSYFKPLEYTIPQRDVRHCYLKA--VCERDEDQKVLGLHILGPNA  450 (503)
T ss_pred             EEeeccccceEEEcccccCCceEEEE--eecccCCceEEEEEEecCch
Confidence                        122  223446676  8866 689999999999876

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=2.2e-34  Score=262.46  Aligned_cols=282  Identities=16%  Similarity=0.180  Sum_probs=193.7

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc---cc--CCcccccce----eccccccccceEE
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---MV--EPSFGERSV----INHTDYLVNGRIV   80 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~---~~--~~~~~~~~~----~~~~~~~~~~~~~   80 (369)
                      ...+||+|||||||||+||..|+ +|+++++||+.+ .+..+.....   +.  ........+    ....+.+ +.++.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   81 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKF-ETEII   81 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEE
Confidence            45789999999999999999986 599999999653 3321111100   00  000111000    1111111 23444


Q ss_pred             Eeeeeeeec--ce--EEecCCeEEeccEEEEccCCCCCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCChhHHH
Q 046865           81 ASPAINITE--NE--VLTAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVE  150 (369)
Q Consensus        81 ~~~~~~~~~--~~--v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G~~g~e  150 (369)
                      .+++..++.  +.  +.. +...+.||+||+|||+.|..|+++...      +..+.........+++++|+|+|++|+|
T Consensus        82 ~~~v~~v~~~~~~~~v~~-~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e  160 (321)
T PRK10262         82 FDHINKVDLQNRPFRLTG-DSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE  160 (321)
T ss_pred             eeEEEEEEecCCeEEEEe-cCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHH
Confidence            444444543  22  332 234689999999999998777654321      1111111223356899999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCC------CcEEe
Q 046865          151 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTST------GDTIK  223 (369)
Q Consensus       151 ~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~------g~~i~  223 (369)
                      +|..|.+  .+.+|+++++.+.+.  .++.+.+.+++.|++.||++++++.+.+++.++..+ .+++.+      .++++
T Consensus       161 ~A~~l~~--~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~  236 (321)
T PRK10262        161 EALYLSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD  236 (321)
T ss_pred             HHHHHHh--hCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEE
Confidence            9999985  389999999987652  345677888899999999999999999987554322 344332      13799


Q ss_pred             ccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC-----ceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHH
Q 046865          224 ADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE-----NLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL  298 (369)
Q Consensus       224 ~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~-----~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i  298 (369)
                      +|.||+++|++||.+++.. .+  .+ ++|+|.||+     ++|| +.|+|||+|||++.+ .++...|+.+|..||..|
T Consensus       237 ~D~vv~a~G~~p~~~l~~~-~l--~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~-~~~~~~A~~~g~~Aa~~~  310 (321)
T PRK10262        237 VAGLFVAIGHSPNTAIFEG-QL--EL-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI-YRQAITSAGTGCMAALDA  310 (321)
T ss_pred             CCEEEEEeCCccChhHhhc-cc--cc-cCCEEEECCCCccccccc-CCCCEEECeeccCCC-cceEEEEehhHHHHHHHH
Confidence            9999999999999987654 34  34 468999998     6777 799999999999753 234566999999999999


Q ss_pred             HHHhhCC
Q 046865          299 KVLMVGE  305 (369)
Q Consensus       299 ~~~~~g~  305 (369)
                      .+.+.+.
T Consensus       311 ~~~l~~~  317 (321)
T PRK10262        311 ERYLDGL  317 (321)
T ss_pred             HHHHHhc
Confidence            9888653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=1.2e-33  Score=274.10  Aligned_cols=280  Identities=18%  Similarity=0.220  Sum_probs=191.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccccc-CCcc---ccccee-cccccc--ccceEEEee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSF---GERSVI-NHTDYL--VNGRIVASP   83 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~-~~~~---~~~~~~-~~~~~~--~~~~~~~~~   83 (369)
                      ..|||+|||||||||+||..|+ +|++|+|||+++ ++..+....... .+..   ....+. .+....  .+++++.++
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~   81 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAE   81 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccE
Confidence            3599999999999999999986 599999999975 332211110000 0100   000111 111111  156777777


Q ss_pred             eeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHHHHH------HHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865           84 AINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQAENQKIKSARSILIVGGGPTGVELAG  153 (369)
Q Consensus        84 ~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~~------~~~~~~~~~~~~~v~vvG~G~~g~e~a~  153 (369)
                      +..++..    .+.+.++ .+.+++||+|||+.|..|+++......      +.........+++++|+|||++|+|+|.
T Consensus        82 V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~  160 (555)
T TIGR03143        82 VLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAV  160 (555)
T ss_pred             EEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHH
Confidence            7777642    3444444 689999999999998877665322100      0111123346899999999999999999


Q ss_pred             HHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE---cCCCcEE----eccE
Q 046865          154 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL---TSTGDTI----KADC  226 (369)
Q Consensus       154 ~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~i----~~d~  226 (369)
                      .|.+  .+.+|+++++.+++..  ++   ....+.++..||++++++.|.++..++....+.   ..+|++.    ++|.
T Consensus       161 ~L~~--~g~~Vtli~~~~~~~~--~~---~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~  233 (555)
T TIGR03143       161 FLTR--YASKVTVIVREPDFTC--AK---LIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDA  233 (555)
T ss_pred             HHHc--cCCEEEEEEeCCcccc--CH---HHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccc
Confidence            9873  4899999999886532  11   222333445699999999999887543221222   3456543    3666


Q ss_pred             ----EEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHh
Q 046865          227 ----HFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       227 ----vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~  302 (369)
                          |++++|++|+++++.. .  +.++++|+|.||+++|| +.|+|||+|||+... ++....|+.||+.||.||.+++
T Consensus       234 ~~~~Vi~a~G~~Pn~~l~~~-~--l~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~-~~~v~~A~~~G~~Aa~~i~~~l  308 (555)
T TIGR03143       234 GTFGVFVFVGYAPSSELFKG-V--VELDKRGYIPTNEDMET-NVPGVYAAGDLRPKE-LRQVVTAVADGAIAATSAERYV  308 (555)
T ss_pred             cceEEEEEeCCCCChhHHhh-h--cccCCCCeEEeCCcccc-CCCCEEEceeccCCC-cchheeHHhhHHHHHHHHHHHH
Confidence                9999999999998765 2  36788899999999998 799999999998532 2345789999999999999888


Q ss_pred             hCC
Q 046865          303 VGE  305 (369)
Q Consensus       303 ~g~  305 (369)
                      .+.
T Consensus       309 ~~~  311 (555)
T TIGR03143       309 KEL  311 (555)
T ss_pred             Hhh
Confidence            654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=6.2e-33  Score=249.36  Aligned_cols=280  Identities=22%  Similarity=0.345  Sum_probs=216.4

Q ss_pred             CcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccC---CcccccceeccccccccceEE-Eeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVE---PSFGERSVINHTDYLVNGRIV-ASPA   84 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~   84 (369)
                      ..++++|||+|++|..|+..++.   -.+++|+-++.++.+....+.....   .....+....+++.  +++++ ...+
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~--gIe~~~~t~v  150 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEK--GIELILGTSV  150 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhc--CceEEEccee
Confidence            36799999999999999998874   3689999888887776655544332   22222222222222  45654 3445


Q ss_pred             eeee--cceEEecCCeEEeccEEEEccCCCC---CCCCChHH------HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865           85 INIT--ENEVLTAEGRRVVYDYLVIATGHKD---PVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (369)
Q Consensus        85 ~~~~--~~~v~~~~g~~~~~d~lviAtG~~~---~~p~~~~~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~  153 (369)
                      +.+|  .+++.+.+|+++.|++|+||||+.+   .+|+...+      .+.+...+.........++++|+|++|+|++.
T Consensus       151 ~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa  230 (478)
T KOG1336|consen  151 VKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAA  230 (478)
T ss_pred             EEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHH
Confidence            5555  5689999999999999999999964   45554422      23444444555566888999999999999999


Q ss_pred             HHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC--CCeEEEcCCCcEEeccEEEEc
Q 046865          154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GSDTYLTSTGDTIKADCHFLC  230 (369)
Q Consensus       154 ~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~d~vi~a  230 (369)
                      +|...  +.+||++++.+.+++ .+.+.+.+.+++.++++||++++++.+.+++...  ....|.+.+|+++++|.|++.
T Consensus       231 ~l~~~--~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~G  308 (478)
T KOG1336|consen  231 ALVSK--AKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVG  308 (478)
T ss_pred             HHHhc--CceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEe
Confidence            99853  899999999999988 6788999999999999999999999999887654  345788999999999999999


Q ss_pred             CCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc--------hhHHHHHHHHHHHHHHH
Q 046865          231 TGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK--------QGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       231 ~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~--------~~~~A~~~g~~~a~~i~  299 (369)
                      +|.+||++++..   +..++++|+|.||+++|| +.|||||+||+++.|...        -...|..+|+.+...|.
T Consensus       309 iG~~p~t~~~~~---g~~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~  381 (478)
T KOG1336|consen  309 IGIKPNTSFLEK---GILLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIK  381 (478)
T ss_pred             eccccccccccc---cceecccCCEeehhceee-ccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhh
Confidence            999999999885   235789999999999999 699999999999886432        22456677776555554

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=9.9e-34  Score=272.71  Aligned_cols=278  Identities=20%  Similarity=0.232  Sum_probs=194.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc---cccccCC-ccccccee-cccccc--ccceEEE-
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRAMVEP-SFGERSVI-NHTDYL--VNGRIVA-   81 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~---~~~~~~~-~~~~~~~~-~~~~~~--~~~~~~~-   81 (369)
                      ...+||+||||||||++||..|+ .|++|+||++.  +|..+..   +..+... ......+. ...+.+  .++++.. 
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~  287 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN  287 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence            45799999999999999999987 49999999853  4332211   1111000 00000010 111111  1455544 


Q ss_pred             eeeeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHHHH------HHHHHHHHHhcCCeEEEEcCChhHHHH
Q 046865           82 SPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN------QYQAENQKIKSARSILIVGGGPTGVEL  151 (369)
Q Consensus        82 ~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~------~~~~~~~~~~~~~~v~vvG~G~~g~e~  151 (369)
                      ..+..++..    .+.+.++..+.||++|+|||+.|..|+++.....      ...........+++++|+|+|++|+|+
T Consensus       288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~  367 (515)
T TIGR03140       288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA  367 (515)
T ss_pred             CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHH
Confidence            345555432    4566677889999999999999776655432100      001111223457899999999999999


Q ss_pred             HHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe-EEEcCC---C--cEEec
Q 046865          152 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD-TYLTST---G--DTIKA  224 (369)
Q Consensus       152 a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~i~~  224 (369)
                      |..|+.  .+.+|+++++.+.+..      ...+.+.+++ .||++++++.+.+++.+++.+ .+++.+   +  +++++
T Consensus       368 A~~L~~--~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~  439 (515)
T TIGR03140       368 AIDLAG--IVRHVTVLEFADELKA------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL  439 (515)
T ss_pred             HHHHHh--cCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence            999974  4889999998876632      3456677776 599999999999887654433 244432   2  46999


Q ss_pred             cEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865          225 DCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       225 d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      |.|++++|++|+++++...   +.++++|+|.||+++|| +.|+|||+|||+..+. ++...|+.+|..||.+|..++.
T Consensus       440 D~vi~a~G~~Pn~~~l~~~---~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~-~~~~~A~~~G~~Aa~~i~~~~~  513 (515)
T TIGR03140       440 DGVFVQIGLVPNTEWLKDA---VELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY-KQIIIAMGEGAKAALSAFDYLI  513 (515)
T ss_pred             CEEEEEeCCcCCchHHhhh---cccCCCCeEEECCCCCC-CCCCEEEcccccCCcc-ceEEEEEccHHHHHHHHHHHHh
Confidence            9999999999999988754   36778899999999998 7999999999997643 3456899999999999987653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=2.1e-33  Score=266.03  Aligned_cols=274  Identities=19%  Similarity=0.195  Sum_probs=185.3

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeee
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAI   85 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   85 (369)
                      ....++|+|||||++|+++|..|+ .|++|+|+|+++..+..+. .+..+   ...........+.+  .+++++.+..+
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~---~~~~~~~~~~~~~l~~~gv~~~~~~~v  206 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEF---RLPKEIVVTEIKTLKKLGVTFRMNFLV  206 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCc---cCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence            345689999999999999999986 5999999999876653211 11100   01111111111111  25666665533


Q ss_pred             eeecceEEecCCeEEeccEEEEccCC-CCCCCCC---hHHHHH---HHHHHHH------------HHhcCCeEEEEcCCh
Q 046865           86 NITENEVLTAEGRRVVYDYLVIATGH-KDPVPKT---RTERLN---QYQAENQ------------KIKSARSILIVGGGP  146 (369)
Q Consensus        86 ~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~p~~---~~~~~~---~~~~~~~------------~~~~~~~v~vvG~G~  146 (369)
                      .   +.+.+.+. ...||+|++|||+ .|..|++   +...+.   ++.....            ....+++++|||+|.
T Consensus       207 ~---~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~  282 (449)
T TIGR01316       207 G---KTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGN  282 (449)
T ss_pred             C---CcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCH
Confidence            1   22333322 3579999999998 5654433   221111   1111111            123468999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEcC-------
Q 046865          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLTS-------  217 (369)
Q Consensus       147 ~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~-------  217 (369)
                      +|+|+|..+.+  .+.+|+++++.++.-  +  .......+.+++.||++++++.+.++..++ +.+ .+++.       
T Consensus       283 ~a~d~A~~l~~--~G~~Vtlv~~~~~~~--~--~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  356 (449)
T TIGR01316       283 TAVDSARTALR--LGAEVHCLYRRTRED--M--TARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQ  356 (449)
T ss_pred             HHHHHHHHHHH--cCCEEEEEeecCccc--C--CCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCc
Confidence            99999999874  488999999876521  1  222334466888999999999998876432 222 23221       


Q ss_pred             --CC-----------cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchh
Q 046865          218 --TG-----------DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG  284 (369)
Q Consensus       218 --~g-----------~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~  284 (369)
                        +|           .++++|.||+|+|+.|++.++...++  .++++|+|.||+++|| +.|+|||+|||+..+  .+.
T Consensus       357 ~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~--~~v  431 (449)
T TIGR01316       357 IDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGA--ATV  431 (449)
T ss_pred             CCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCc--HHH
Confidence              22           26999999999999999887765544  6778899999999998 799999999999654  367


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 046865          285 FLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       285 ~~A~~~g~~~a~~i~~~  301 (369)
                      ..|+.+|+.||.+|.++
T Consensus       432 ~~Ai~~G~~AA~~I~~~  448 (449)
T TIGR01316       432 IRAMGQGKRAAKSINEY  448 (449)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            89999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=3.3e-33  Score=262.13  Aligned_cols=281  Identities=22%  Similarity=0.277  Sum_probs=229.9

Q ss_pred             cceEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCccc-ccceeccccccc--cceEEEe-ee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVINHTDYLV--NGRIVAS-PA   84 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~-~~   84 (369)
                      +.++||||.|.+|..+..++.    .-++|+++-.+++..+....++..+.+... .+..+...+|+.  +++++.+ .+
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            578999999999999997763    258999999999988888888877766433 334444555654  5666544 57


Q ss_pred             eeeec--ceEEecCCeEEeccEEEEccCCCCCCCCCh---------HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865           85 INITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------TERLNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (369)
Q Consensus        85 ~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~---------~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~  153 (369)
                      +.+|+  +.|.++.|+++.||+|++||||.|.+|+++         ...+.+...+....+..++.+|||||..|+|.|.
T Consensus        83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~  162 (793)
T COG1251          83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAAR  162 (793)
T ss_pred             EEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHH
Confidence            77775  478888999999999999999998877654         2345555566555666777899999999999999


Q ss_pred             HHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865          154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       154 ~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G  232 (369)
                      .|.+  .|.++++++-.+.++. .+|+.....+++.++++|++++++...+++..++....+.++||..+++|.|++|+|
T Consensus       163 ~L~~--~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~G  240 (793)
T COG1251         163 GLKD--LGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVG  240 (793)
T ss_pred             HHHh--CCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecc
Confidence            9984  5999999999988876 688899999999999999999999998888765556788999999999999999999


Q ss_pred             CCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--cchhHHHHHHHHHHHHHHHH
Q 046865          233 KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--IKQGFLAQKHAQVAAKNLKV  300 (369)
Q Consensus       233 ~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~~~~~~A~~~g~~~a~~i~~  300 (369)
                      .+||.++..+.++  ..++  .|.||++||| ++|+|||+|+|+.+..  .-+...+.+|++++|.++..
T Consensus       241 IrPn~ela~~aGl--avnr--GIvvnd~mqT-sdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~  305 (793)
T COG1251         241 IRPNDELAKEAGL--AVNR--GIVVNDYMQT-SDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCG  305 (793)
T ss_pred             cccccHhHHhcCc--CcCC--Ceeecccccc-cCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhcc
Confidence            9999999888876  4444  5999999999 7999999999997643  22445788999999999984

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=1.8e-32  Score=259.94  Aligned_cols=279  Identities=19%  Similarity=0.205  Sum_probs=184.8

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCccccc-ceecccccc--ccceEEEeee
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGER-SVINHTDYL--VNGRIVASPA   84 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~   84 (369)
                      ....+||+||||||||++||..|+ .|++|+|+|+.+.+|..+. .+..+   ..+.. ......+++  .++++..+..
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---~l~~~~~~~~~~~~~~~~gv~i~~~~~  213 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEF---RLPKETVVKKEIENIKKLGVKIETNVV  213 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCc---cCCccHHHHHHHHHHHHcCCEEEcCCE
Confidence            446789999999999999999987 5999999999876653221 11111   01111 111111111  1455555443


Q ss_pred             eeeecceEEecCC-eEEeccEEEEccCC-CCCCCCCh---HHHHH---HHHHHHH-----------HHhcCCeEEEEcCC
Q 046865           85 INITENEVLTAEG-RRVVYDYLVIATGH-KDPVPKTR---TERLN---QYQAENQ-----------KIKSARSILIVGGG  145 (369)
Q Consensus        85 ~~~~~~~v~~~~g-~~~~~d~lviAtG~-~~~~p~~~---~~~~~---~~~~~~~-----------~~~~~~~v~vvG~G  145 (369)
                      +.   +.+...+. ..+.||+|+||||+ .|..|+++   ...+.   ++.....           ....+++++|||+|
T Consensus       214 v~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG  290 (464)
T PRK12831        214 VG---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGG  290 (464)
T ss_pred             EC---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCc
Confidence            21   12223232 34579999999998 46544432   22221   1211110           12457899999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEc-------
Q 046865          146 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLT-------  216 (369)
Q Consensus       146 ~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~-------  216 (369)
                      ++|+|+|..+..  .+.+|+++++.+.  ..++... ..+ +.+++.||++++++.+.++..++ +.+ .+++       
T Consensus       291 ~va~d~A~~l~r--~Ga~Vtlv~r~~~--~~m~a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  364 (464)
T PRK12831        291 NVAMDAARTALR--LGAEVHIVYRRSE--EELPARV-EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGE  364 (464)
T ss_pred             HHHHHHHHHHHH--cCCEEEEEeecCc--ccCCCCH-HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecC
Confidence            999999998874  4888999998653  1112121 222 34667899999999988875432 222 1211       


Q ss_pred             --C---------CCc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCccccc
Q 046865          217 --S---------TGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIREIK  282 (369)
Q Consensus       217 --~---------~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~~~~  282 (369)
                        .         +|+  ++++|.||+|+|..|++.++... .++.++++|+|.||++ ++| +.|+|||+|||+..+.  
T Consensus       365 ~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~--  440 (464)
T PRK12831        365 PDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTT-KGLKINKRGCIVADEETGLT-SKEGVFAGGDAVTGAA--  440 (464)
T ss_pred             cCCCCCccceecCCceEEEECCEEEECCCCCCChhhhccc-CCceECCCCcEEECCCCCcc-CCCCEEEeCCCCCCch--
Confidence              1         222  69999999999999998876542 2336778899999998 887 7999999999986543  


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhC
Q 046865          283 QGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       283 ~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      +...|+.+|+.||.+|.+.|.+
T Consensus       441 ~v~~Ai~~G~~AA~~I~~~L~~  462 (464)
T PRK12831        441 TVILAMGAGKKAAKAIDEYLSK  462 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            6789999999999999988865

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=1.9e-32  Score=264.18  Aligned_cols=280  Identities=21%  Similarity=0.237  Sum_probs=195.9

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc---cccC-Cccccccee-ccccccc--cceEEE-
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR---AMVE-PSFGERSVI-NHTDYLV--NGRIVA-   81 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~~~~~~--~~~~~~-   81 (369)
                      ...+||+||||||||++||.+|+ .|++|+||++.  +|..+....   .+.. +......+. .......  ++++.. 
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~  286 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNL  286 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcC
Confidence            44789999999999999999986 59999999874  443322110   0000 000000000 0111111  344443 


Q ss_pred             eeeeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHH-H-----HHHHHHHHHHhcCCeEEEEcCChhHHHH
Q 046865           82 SPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER-L-----NQYQAENQKIKSARSILIVGGGPTGVEL  151 (369)
Q Consensus        82 ~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~-~-----~~~~~~~~~~~~~~~v~vvG~G~~g~e~  151 (369)
                      .++..++..    .+.+.++.++.||++|+|||+.|..|+++... +     ............+++++|+|+|++|+|+
T Consensus       287 ~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~  366 (517)
T PRK15317        287 QRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEA  366 (517)
T ss_pred             CEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHH
Confidence            355566432    56666778899999999999997766554221 1     0011111223467899999999999999


Q ss_pred             HHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe-EEEcC---CC--cEEec
Q 046865          152 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD-TYLTS---TG--DTIKA  224 (369)
Q Consensus       152 a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g--~~i~~  224 (369)
                      |..|+.  .+.+|+++++.+.+..      .+.+.+.+.+ .||++++++.+.++..+++.+ .+.+.   +|  +++++
T Consensus       367 A~~L~~--~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~  438 (517)
T PRK15317        367 AIDLAG--IVKHVTVLEFAPELKA------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLEL  438 (517)
T ss_pred             HHHHHh--cCCEEEEEEECccccc------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEc
Confidence            999984  4899999999876532      2456666665 599999999999987654433 23432   33  36999


Q ss_pred             cEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          225 DCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       225 d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      |.+++++|++||++++...   +.++++|+|.||+++|| +.|+|||+|||+..+ .++...|+.+|..||.++...+..
T Consensus       439 D~v~~~~G~~p~~~~l~~~---v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~-~k~~~~A~~eG~~Aa~~~~~~l~~  513 (517)
T PRK15317        439 EGVFVQIGLVPNTEWLKGT---VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVP-YKQIIIAMGEGAKAALSAFDYLIR  513 (517)
T ss_pred             CEEEEeECCccCchHHhhh---eeeCCCCcEEECcCCCC-CCCCEEECccccCCC-CCEEEEhhhhHHHHHHHHHHHHhh
Confidence            9999999999999998764   36778899999999997 799999999999764 346789999999999999887754


Q ss_pred             C
Q 046865          305 E  305 (369)
Q Consensus       305 ~  305 (369)
                      .
T Consensus       514 ~  514 (517)
T PRK15317        514 N  514 (517)
T ss_pred             c
Confidence            3

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-32  Score=243.46  Aligned_cols=275  Identities=23%  Similarity=0.289  Sum_probs=197.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCc-EEEEcCCCCccccccc--cccccCCcccc----ccee-ccccc--cccceEE
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWAS--LRAMVEPSFGE----RSVI-NHTDY--LVNGRIV   80 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~-V~lie~~~~~~~~~~~--~~~~~~~~~~~----~~~~-~~~~~--~~~~~~~   80 (369)
                      +.+||+|||||||||+||.++. .+++ ++|+|+...-+.+...  ...+  |.+..    ..+. ...+.  .-+++++
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~veny--pg~~~~~~g~~L~~~~~~~a~~~~~~~~   79 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENY--PGFPGGILGPELMEQMKEQAEKFGVEIV   79 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCC--CCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence            4699999999999999999986 4888 6666664332221111  1110  11111    0111 11111  1256666


Q ss_pred             Eeeeeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCChhHHH
Q 046865           81 ASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVE  150 (369)
Q Consensus        81 ~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G~~g~e  150 (369)
                      ...+..++..    .|.+.++. +++++||||||..+..|+.+.+.      +..+..... ....++++|+|||.+++|
T Consensus        80 ~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve  157 (305)
T COG0492          80 EDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVE  157 (305)
T ss_pred             EEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHH
Confidence            6767666543    56777776 99999999999997766553211      111222223 566789999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCC--C--cEEecc
Q 046865          151 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTST--G--DTIKAD  225 (369)
Q Consensus       151 ~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~d  225 (369)
                      .|.+|..  .+++|++++|.+.+-      ..+.+.+.++++ +|++++++.+.++..++ ...+++.+  |  +.+++|
T Consensus       158 ~Al~L~~--~a~~Vtlv~r~~~~r------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~  228 (305)
T COG0492         158 EALYLSK--IAKKVTLVHRRDEFR------AEEILVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVD  228 (305)
T ss_pred             HHHHHHH--hcCeEEEEecCcccC------cCHHHHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEec
Confidence            9999985  378899999998773      356677777766 89999999999987655 23444443  3  378999


Q ss_pred             EEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          226 CHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       226 ~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      -++++.|..|+++++...+.   ++++|+|.+|+.++| +.|+|||+||++..+. ++...|..+|..||.++.+.+..
T Consensus       229 gvf~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~-rqi~ta~~~G~~Aa~~a~~~l~~  302 (305)
T COG0492         229 GVFIAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNG-RQIATAAGDGAIAALSAERYLES  302 (305)
T ss_pred             eEEEecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCcc-cEEeehhhhHHHHHHHHHHHhhh
Confidence            99999999999998877653   789999999999998 8999999999998754 36678899999999999877653

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=8e-32  Score=268.20  Aligned_cols=272  Identities=23%  Similarity=0.286  Sum_probs=185.7

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcc--cccceecccccc--ccceEEEeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF--GERSVINHTDYL--VNGRIVASPAI   85 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~   85 (369)
                      ...++|+||||||||++||+.|+ +|++|+|+|+++.+|.....   . -|.+  +........+++  .++++..+..+
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~---~-IP~~Rlp~evL~~die~l~~~GVe~~~gt~V  612 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN---I-IPQFRIPAELIQHDIEFVKAHGVKFEFGCSP  612 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee---e-cccccccHHHHHHHHHHHHHcCCEEEeCcee
Confidence            45689999999999999999997 59999999998877643211   1 1111  111111111111  15666655443


Q ss_pred             eeecceEEecCCeEEeccEEEEccCCCCC----CCCCh------HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHH
Q 046865           86 NITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI  155 (369)
Q Consensus        86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~------~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l  155 (369)
                      .     +...+.+...||+||||||+.+.    +|+..      .+.+..+.........+++|+|||||.+|+|+|..+
T Consensus       613 d-----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a  687 (1019)
T PRK09853        613 D-----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAA  687 (1019)
T ss_pred             E-----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHH
Confidence            2     23334455679999999999842    33321      011111211122335689999999999999999877


Q ss_pred             hhhCCC-CeEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-----------------EEc
Q 046865          156 AVDFPE-KKVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-----------------YLT  216 (369)
Q Consensus       156 ~~~~~~-~~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-----------------v~~  216 (369)
                      .+ ..+ .+|+++.|.++ .++..    .+.+.+.+ +.||+++.++.+.++..+ +.+.                 +.+
T Consensus       688 ~R-lgGakeVTLVyRr~~~~MPA~----~eEle~Al-eeGVe~~~~~~p~~I~~d-G~l~~~~~~lg~~d~~Gr~~~v~t  760 (1019)
T PRK09853        688 LR-VPGVEKVTVVYRRTKQEMPAW----REEYEEAL-EDGVEFKELLNPESFDAD-GTLTCRVMKLGEPDESGRRRPVET  760 (1019)
T ss_pred             Hh-cCCCceEEEEEccCccccccc----HHHHHHHH-HcCCEEEeCCceEEEEcC-CcEEEEEEEeecccCCCceEEeeC
Confidence            63 334 58999998763 44433    33344433 479999999888777532 2221                 222


Q ss_pred             CCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHH
Q 046865          217 STGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAK  296 (369)
Q Consensus       217 ~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~  296 (369)
                      .++.++++|.||+|+|..|+++++...++  .++++|++.||+++|| +.|+|||+|||+..+.  +...|+.||+.||+
T Consensus       761 g~~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~--tvv~Ai~qGr~AA~  835 (1019)
T PRK09853        761 GETVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPS--TIVAAIADARRAAD  835 (1019)
T ss_pred             CCeEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCch--HHHHHHHHHHHHHH
Confidence            33458999999999999999998866544  5678899999999998 7999999999986543  67899999999999


Q ss_pred             HHHHHhh
Q 046865          297 NLKVLMV  303 (369)
Q Consensus       297 ~i~~~~~  303 (369)
                      ||+....
T Consensus       836 nI~~~~~  842 (1019)
T PRK09853        836 AILSREG  842 (1019)
T ss_pred             HHhhhcC
Confidence            9987554

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=4e-32  Score=250.30  Aligned_cols=281  Identities=19%  Similarity=0.129  Sum_probs=184.1

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCccccccee-cccccc-ccceEEEeeee
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVI-NHTDYL-VNGRIVASPAI   85 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~   85 (369)
                      +...++|+|||||++|+++|..|+ .|++|++||+.+.++..+. .....   ........ ...++. .++++..+..+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~l~~~~i~~~~~~~v   91 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEF---RIPIERVREGVKELEEAGVVFHTRTKV   91 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCccc---ccCHHHHHHHHHHHHhCCeEEecCcEE
Confidence            334679999999999999999986 5999999999887653221 11000   00100000 001111 14555544333


Q ss_pred             eee-c------c-----eEEecCCeEEeccEEEEccCCC-CCCCCCh---HHHHHHHHHHHH-------------H--Hh
Q 046865           86 NIT-E------N-----EVLTAEGRRVVYDYLVIATGHK-DPVPKTR---TERLNQYQAENQ-------------K--IK  134 (369)
Q Consensus        86 ~~~-~------~-----~v~~~~g~~~~~d~lviAtG~~-~~~p~~~---~~~~~~~~~~~~-------------~--~~  134 (369)
                      ..+ .      .     .+.. ++..+.||+||||||+. +..|+++   ...+.+......             .  ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T PRK12770         92 CCGEPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPV  170 (352)
T ss_pred             eeccccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccccccccccc
Confidence            211 1      0     1111 11247899999999994 5544332   211111111100             0  01


Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT  213 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  213 (369)
                      ..++++|+|+|++|+|+|..|..  .+.+ |+++++.+...    ........+.|+++||++++++.+.+++.++....
T Consensus       171 ~g~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~~~~~~----~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~  244 (352)
T PRK12770        171 EGKKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYRRTINE----APAGKYEIERLIARGVEFLELVTPVRIIGEGRVEG  244 (352)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeecchhh----CCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeE
Confidence            24799999999999999999874  3665 99999876421    12224455679999999999999888764432222


Q ss_pred             EEc--------------------CCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEec
Q 046865          214 YLT--------------------STGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIG  273 (369)
Q Consensus       214 v~~--------------------~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~G  273 (369)
                      +++                    .+++++++|.+|+++|++|++.+... .+++.++++|++.||+++++ +.|+|||+|
T Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~-~~g~~~~~~g~i~vd~~~~t-~~~~vyaiG  322 (352)
T PRK12770        245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKE-CLGIELNRKGEIVVDEKHMT-SREGVFAAG  322 (352)
T ss_pred             EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhc-ccCceecCCCcEeeCCCccc-CCCCEEEEc
Confidence            221                    12347999999999999999876554 13446778899999999998 799999999


Q ss_pred             ccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          274 DITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       274 D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ||+..+.  ....|+.||+.+|.+|.+.|..
T Consensus       323 D~~~~~~--~~~~A~~~g~~aa~~i~~~l~~  351 (352)
T PRK12770        323 DVVTGPS--KIGKAIKSGLRAAQSIHEWLDL  351 (352)
T ss_pred             ccccCcc--hHHHHHHHHHHHHHHHHHHHhc
Confidence            9997543  6789999999999999987753

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=7.1e-32  Score=256.87  Aligned_cols=278  Identities=19%  Similarity=0.235  Sum_probs=186.4

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc-cccccCCcccccceecccccc--ccceEEEeeee
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGERSVINHTDYL--VNGRIVASPAI   85 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   85 (369)
                      ....++|+|||||++|+++|..|+ +|++|+|+|+++.++..+.. +..+   ...........+++  .++++..+..+
T Consensus       137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~---~~~~~~~~~~~~~l~~~gv~~~~~~~v  213 (457)
T PRK11749        137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEF---RLPKDIVDREVERLLKLGVEIRTNTEV  213 (457)
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCc---cCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            345689999999999999999986 59999999998876532111 1000   00111111111111  14566555443


Q ss_pred             eeecceEEecCCeEEeccEEEEccCCC-CCC---CCChHHHHH---HHHHHHH------HHhcCCeEEEEcCChhHHHHH
Q 046865           86 NITENEVLTAEGRRVVYDYLVIATGHK-DPV---PKTRTERLN---QYQAENQ------KIKSARSILIVGGGPTGVELA  152 (369)
Q Consensus        86 ~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~---p~~~~~~~~---~~~~~~~------~~~~~~~v~vvG~G~~g~e~a  152 (369)
                      .   +.+.+.+. .+.||+||+|||+. +..   |+.....+.   ++.....      ....+++++|||+|.+|+|+|
T Consensus       214 ~---~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A  289 (457)
T PRK11749        214 G---RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAA  289 (457)
T ss_pred             C---CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHH
Confidence            1   12222222 37899999999986 443   333211111   1111111      123578999999999999999


Q ss_pred             HHHhhhCCCC-eEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC---eEEEc-----------
Q 046865          153 GEIAVDFPEK-KVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS---DTYLT-----------  216 (369)
Q Consensus       153 ~~l~~~~~~~-~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---~~v~~-----------  216 (369)
                      ..+..  .+. +|+++++.+. .++.     .....+.+++.||++++++.+.++..+++.   +.+..           
T Consensus       290 ~~l~~--~G~~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~  362 (457)
T PRK11749        290 RTAKR--LGAESVTIVYRRGREEMPA-----SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGR  362 (457)
T ss_pred             HHHHH--cCCCeEEEeeecCcccCCC-----CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCC
Confidence            99874  355 8999998654 2322     122356788899999999999888654432   33221           


Q ss_pred             ------CCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC-ceeeccCCCeEEecccCCccccchhHHHHH
Q 046865          217 ------STGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE-NLRVKGQKNIFAIGDITDIREIKQGFLAQK  289 (369)
Q Consensus       217 ------~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~-~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~  289 (369)
                            .+++++++|.||+|+|.+|+..++.. ..++.++++|+|.||+ +++| +.|+|||+|||+..  +++...|+.
T Consensus       363 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~-~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~--~~~~~~A~~  438 (457)
T PRK11749        363 RRVPIEGSEFTLPADLVIKAIGQTPNPLILST-TPGLELNRWGTIIADDETGRT-SLPGVFAGGDIVTG--AATVVWAVG  438 (457)
T ss_pred             cccCCCCceEEEECCEEEECccCCCCchhhcc-ccCccCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCC--chHHHHHHH
Confidence                  12347999999999999999776542 2234678889999998 7777 79999999999954  346789999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 046865          290 HAQVAAKNLKVLMVGE  305 (369)
Q Consensus       290 ~g~~~a~~i~~~~~g~  305 (369)
                      ||+.||.+|.+.+.|+
T Consensus       439 ~G~~aA~~I~~~l~g~  454 (457)
T PRK11749        439 DGKDAAEAIHEYLEGA  454 (457)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999998875

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.97  E-value=1.7e-30  Score=247.79  Aligned_cols=283  Identities=17%  Similarity=0.187  Sum_probs=182.7

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN   86 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (369)
                      ...++|+|||||+||+++|..|+ +|++|+|||+++.++..+. .+..+   ...........+++  .++++..+..+.
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~  217 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDF---KLEKEVIDRRIELMEAEGIEFRTNVEVG  217 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcc---cCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence            45689999999999999999986 5999999999887653211 11110   00101111111111  145665554433


Q ss_pred             eecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHHHHH---HHHH-----HH------HHhcCCeEEEEcCChhH
Q 046865           87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQ---YQAE-----NQ------KIKSARSILIVGGGPTG  148 (369)
Q Consensus        87 ~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~~~~---~~~~-----~~------~~~~~~~v~vvG~G~~g  148 (369)
                      .+.   .. +.....||++++|||+. +.   +|+.+...+..   +...     ..      ....+++++|||+|++|
T Consensus       218 ~~~---~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g  293 (471)
T PRK12810        218 KDI---TA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTG  293 (471)
T ss_pred             CcC---CH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHH
Confidence            221   01 11235799999999997 44   44432222111   1110     00      12357899999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEEcCccccccC-C----cchHH-HHHHHHHhCCcEEEeCceeeeccCCCCCeE-EE-----c
Q 046865          149 VELAGEIAVDFPEKKVTLVHKGSRLLEFI-G----PKAGD-KTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YL-----T  216 (369)
Q Consensus       149 ~e~a~~l~~~~~~~~v~lv~~~~~~l~~~-~----~~~~~-~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~-----~  216 (369)
                      +|+|..+.. ....+|+++++.+...... +    +.... ...+.+++.||++++++.+.++..+++.++ ++     +
T Consensus       294 ~e~A~~~~~-~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~  372 (471)
T PRK12810        294 MDCVGTAIR-QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL  372 (471)
T ss_pred             HHHHHHHHH-cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe
Confidence            999987663 2235888776554322211 0    01111 134567788999999999998864444332 22     2


Q ss_pred             CCC---------cEEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeC-CceeeccCCCeEEecccCCccccchhH
Q 046865          217 STG---------DTIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVD-ENLRVKGQKNIFAIGDITDIREIKQGF  285 (369)
Q Consensus       217 ~~g---------~~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd-~~l~~~~~~~i~a~GD~~~~~~~~~~~  285 (369)
                      .+|         +++++|.||+|+|.+|+. .++...  ++.++++|++.+| ++++| +.|+|||+|||+..+  ++..
T Consensus       373 ~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~--gl~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~--~~~~  447 (471)
T PRK12810        373 GEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQF--GVELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQ--SLVV  447 (471)
T ss_pred             cCCCccccCCceEEEECCEEEECcCcCCCchhhcccc--CcccCCCCCEEeCCCcccC-CCCCEEEccccCCCc--hhHH
Confidence            222         479999999999999985 455443  3467888999998 78997 799999999999754  3578


Q ss_pred             HHHHHHHHHHHHHHHHhhCCC
Q 046865          286 LAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       286 ~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      .|+.||+.||.+|...|.|..
T Consensus       448 ~Av~~G~~AA~~i~~~L~g~~  468 (471)
T PRK12810        448 WAIAEGRQAARAIDAYLMGST  468 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999999998753

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.97  E-value=2.7e-30  Score=258.54  Aligned_cols=270  Identities=22%  Similarity=0.252  Sum_probs=179.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcc--cccceecccccc--ccceEEEeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF--GERSVINHTDYL--VNGRIVASPAI   85 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~   85 (369)
                      ...++|+|||||||||+||+.|+ +|++|+|+|+++.+|......    -+.+  +........+++  .++++..+...
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~----IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~  610 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI----IPEFRISAESIQKDIELVKFHGVEFKYGCSP  610 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec----ccccCCCHHHHHHHHHHHHhcCcEEEEeccc
Confidence            34689999999999999999997 599999999998776432111    1111  111111111111  14566554211


Q ss_pred             eeecceEEecCCeEEeccEEEEccCCCCC----CCCChHH---HHHHHHHHH---HHHhcCCeEEEEcCChhHHHHHHHH
Q 046865           86 NITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTE---RLNQYQAEN---QKIKSARSILIVGGGPTGVELAGEI  155 (369)
Q Consensus        86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~~~---~~~~~~~~~---~~~~~~~~v~vvG~G~~g~e~a~~l  155 (369)
                           .+.+.+.+...||+|+||||+.+.    +|+....   .+.-+....   .....+++|+|||||.+|+|+|..+
T Consensus       611 -----d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a  685 (1012)
T TIGR03315       611 -----DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAA  685 (1012)
T ss_pred             -----ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHH
Confidence                 122223345679999999999843    2332110   111111111   1234689999999999999999887


Q ss_pred             hhhCCC-CeEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE---------------cCC
Q 046865          156 AVDFPE-KKVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL---------------TST  218 (369)
Q Consensus       156 ~~~~~~-~~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~---------------~~~  218 (369)
                      .+ .++ .+|+++++..+ .++..+    +.+.+.+ +.||+++++..+.+++  ++.+.+.               ..+
T Consensus       686 ~R-l~Ga~kVtLVyRr~~~~Mpa~~----eEl~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~  757 (1012)
T TIGR03315       686 LR-VPGVEKVTVVYRRTKRYMPASR----EELEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGT  757 (1012)
T ss_pred             HH-hCCCceEEEEEccCccccccCH----HHHHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecC
Confidence            63 345 58999998763 344333    3334333 5799999988777665  2222211               112


Q ss_pred             Cc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCccccchhHHHHHHHHHHH
Q 046865          219 GD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAA  295 (369)
Q Consensus       219 g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a  295 (369)
                      |+  ++++|.||+|+|..|+++++...++  .++++|++.||++ ++| +.|+|||+|||+..+.  +...|+.||+.||
T Consensus       758 Gee~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~--tVv~AIaqGr~AA  832 (1012)
T TIGR03315       758 GETVDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPA--TIVEAIADGRKAA  832 (1012)
T ss_pred             CCeEEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCcc--HHHHHHHHHHHHH
Confidence            33  6899999999999999998865444  6788899999986 776 7999999999986543  6789999999999


Q ss_pred             HHHHHHh
Q 046865          296 KNLKVLM  302 (369)
Q Consensus       296 ~~i~~~~  302 (369)
                      .+|++..
T Consensus       833 ~nIl~~~  839 (1012)
T TIGR03315       833 NAILSRE  839 (1012)
T ss_pred             HHHhccc
Confidence            9998543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.97  E-value=1.1e-30  Score=262.22  Aligned_cols=277  Identities=19%  Similarity=0.212  Sum_probs=183.7

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN   86 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (369)
                      ...++|+||||||||++||..|+ +|++|+|+|+.+.++.... .+..+   ..+........+++  .++++..+..+ 
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---rlp~~~~~~~~~~l~~~gv~~~~~~~v-  504 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEF---RLPKKIVDVEIENLKKLGVKFETDVIV-  504 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCC---CCCHHHHHHHHHHHHHCCCEEECCCEE-
Confidence            35689999999999999999986 5999999999776553211 11111   01111111111111  15666554432 


Q ss_pred             eecceEEecCCeEEeccEEEEccCCC-CCCCCChH---HHH---HHHHHHHH-----------HHhcCCeEEEEcCChhH
Q 046865           87 ITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTRT---ERL---NQYQAENQ-----------KIKSARSILIVGGGPTG  148 (369)
Q Consensus        87 ~~~~~v~~~~g~~~~~d~lviAtG~~-~~~p~~~~---~~~---~~~~~~~~-----------~~~~~~~v~vvG~G~~g  148 (369)
                        .+.+.+.+.+...||+|+||||+. |..|+++.   ..+   .++.....           ....+++++|||||++|
T Consensus       505 --~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a  582 (752)
T PRK12778        505 --GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA  582 (752)
T ss_pred             --CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence              123334344456799999999994 65444332   111   11211111           11346899999999999


Q ss_pred             HHHHHHHhhhCCCCe-EEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEc--------
Q 046865          149 VELAGEIAVDFPEKK-VTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLT--------  216 (369)
Q Consensus       149 ~e~a~~l~~~~~~~~-v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~--------  216 (369)
                      +|+|..+.+  .+.+ |+++++.++ .++.   .. .. .+.+++.||++++++.+.++..++ +.+ .+++        
T Consensus       583 ~d~A~~~~r--~Ga~~Vtlv~r~~~~~~~~---~~-~e-~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  655 (752)
T PRK12778        583 MDSARTAKR--LGAERVTIVYRRSEEEMPA---RL-EE-VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEP  655 (752)
T ss_pred             HHHHHHHHH--cCCCeEEEeeecCcccCCC---CH-HH-HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCc
Confidence            999998873  4665 999998764 2222   21 12 245778899999999888775433 222 1222        


Q ss_pred             -CCC-----------cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchh
Q 046865          217 -STG-----------DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG  284 (369)
Q Consensus       217 -~~g-----------~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~  284 (369)
                       .+|           .++++|.||+|+|..|+..++... .++.++++|+|.||++++| +.|+|||+|||+..+  .+.
T Consensus       656 ~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~--~~v  731 (752)
T PRK12778        656 DASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGG--ATV  731 (752)
T ss_pred             CCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCc--HHH
Confidence             112           269999999999999998765432 2346778899999999987 799999999999754  367


Q ss_pred             HHHHHHHHHHHHHHHHHhhC
Q 046865          285 FLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       285 ~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ..|+.+|+.||.+|.+.|.+
T Consensus       732 v~Av~~G~~AA~~I~~~L~~  751 (752)
T PRK12778        732 ILAMGDGKRAAAAIDEYLSS  751 (752)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            89999999999999988865

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.97  E-value=2.9e-30  Score=254.26  Aligned_cols=277  Identities=18%  Similarity=0.231  Sum_probs=183.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc-cccccCCcccccceecccccc--ccceEEEeeeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGERSVINHTDYL--VNGRIVASPAINI   87 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (369)
                      ..++|+|||||++|+++|..|+ .|++|+|+|+++.++..+.. +..+   ...........+.+  .++++..+.....
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~---~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRF---RLPESVIDADIAPLRAMGAEFRFNTVFGR  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCC---CCCHHHHHHHHHHHHHcCCEEEeCCcccC
Confidence            4579999999999999999987 59999999999876533211 1100   00100000001111  1455554443222


Q ss_pred             ecceEEecCCeEEeccEEEEccCCCCC----CCCChHHHHHHHHHHH------HHHhcCCeEEEEcCChhHHHHHHHHhh
Q 046865           88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTERLNQYQAEN------QKIKSARSILIVGGGPTGVELAGEIAV  157 (369)
Q Consensus        88 ~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~~~~~~~~~~~~------~~~~~~~~v~vvG~G~~g~e~a~~l~~  157 (369)
                      +   +...+. ...||++++|||+.+.    +|+.+...+.+.....      .....+++++|||+|.+|+|+|..+..
T Consensus       269 d---v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~  344 (652)
T PRK12814        269 D---ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALR  344 (652)
T ss_pred             c---cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHH
Confidence            1   111111 2359999999999742    4443222211111111      123467999999999999999998874


Q ss_pred             hCCCCeEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE---cC---------------C
Q 046865          158 DFPEKKVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL---TS---------------T  218 (369)
Q Consensus       158 ~~~~~~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~---~~---------------~  218 (369)
                       ....+|+++++.++ .++..+    ..+.+. .+.||++++++.+.++..+++.+.++   +.               +
T Consensus       345 -~Ga~~Vtlv~r~~~~~mpa~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~  418 (652)
T PRK12814        345 -LGAESVTILYRRTREEMPANR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVE  418 (652)
T ss_pred             -cCCCeEEEeeecCcccCCCCH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecC
Confidence             32357999998764 344332    233333 35799999999888776544433221   11               2


Q ss_pred             Cc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCccccchhHHHHHHHHHHH
Q 046865          219 GD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAA  295 (369)
Q Consensus       219 g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a  295 (369)
                      |+  ++++|.||+++|..|+++++...++  .++.+|+|.||++ ++| +.|+|||+||++..+  ++...|+.||+.||
T Consensus       419 g~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~--~~v~~Ai~~G~~AA  493 (652)
T PRK12814        419 GSEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGA--DIAINAVEQGKRAA  493 (652)
T ss_pred             CceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCc--hHHHHHHHHHHHHH
Confidence            22  6899999999999999988765544  6777899999975 666 799999999999654  36789999999999


Q ss_pred             HHHHHHhhCCC
Q 046865          296 KNLKVLMVGER  306 (369)
Q Consensus       296 ~~i~~~~~g~~  306 (369)
                      .+|.+.|.|++
T Consensus       494 ~~I~~~L~g~~  504 (652)
T PRK12814        494 HAIDLFLNGKP  504 (652)
T ss_pred             HHHHHHHcCCC
Confidence            99999998764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.97  E-value=6.6e-30  Score=258.30  Aligned_cols=277  Identities=16%  Similarity=0.181  Sum_probs=184.9

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCccc--ccceecccccc--ccceEEEeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTDYL--VNGRIVASPAI   85 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~   85 (369)
                      ...++|+|||||||||+||..|+ +|++|+|+|+.+.+|...   ... -|.+.  ........+.+  .+++|..+..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l---~yG-IP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v  379 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVL---RYG-IPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV  379 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceE---Ecc-CCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence            34689999999999999999986 599999999988766321   111 11111  11111111111  25666655443


Q ss_pred             eeecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHHHH---HHHHHHHH-------------HhcCCeEEEEcCC
Q 046865           86 NITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLN---QYQAENQK-------------IKSARSILIVGGG  145 (369)
Q Consensus        86 ~~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~~~---~~~~~~~~-------------~~~~~~v~vvG~G  145 (369)
                      .   +.+.+++.....||+|+||||+. |+   +|+.+...+.   ++......             ...+++|+|||||
T Consensus       380 G---~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG  456 (944)
T PRK12779        380 G---KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGG  456 (944)
T ss_pred             c---cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCC
Confidence            2   23555555567899999999995 55   4443222111   12111100             1146899999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEEcCcc-ccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC--Ce-EEE-----c
Q 046865          146 PTGVELAGEIAVDFPEKKVTLVHKGSR-LLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG--SD-TYL-----T  216 (369)
Q Consensus       146 ~~g~e~a~~l~~~~~~~~v~lv~~~~~-~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~-----~  216 (369)
                      .+|+++|..+.  +.|.+|+++.+.++ .+|    .....+.+ ..+.||++++++.+.++..+++  .+ .+.     +
T Consensus       457 ~tA~D~A~ta~--R~Ga~Vtlv~rr~~~~mp----a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l  529 (944)
T PRK12779        457 NTAMDAARTAK--RLGGNVTIVYRRTKSEMP----ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNEL  529 (944)
T ss_pred             HHHHHHHHHHH--HcCCEEEEEEecCccccc----ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEe
Confidence            99999999887  35889999998753 222    22233333 3467999999988888764422  11 111     1


Q ss_pred             ----C--------CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCcccc
Q 046865          217 ----S--------TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIREI  281 (369)
Q Consensus       217 ----~--------~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~~~  281 (369)
                          .        +|  .++++|.||+|+|..|+..+ .....+++++++|.|.||+. ++| +.|+|||+|||+..+. 
T Consensus       530 ~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l-~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~-  606 (944)
T PRK12779        530 GEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM-KDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGS-  606 (944)
T ss_pred             ccccCcCceeeecCCceEEEECCEEEEcCCcCCChhh-hhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChH-
Confidence                1        22  36999999999999998653 33334456788899999974 777 7999999999997543 


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhCC
Q 046865          282 KQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       282 ~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                       +...|+.+|+.||.+|..++...
T Consensus       607 -~vv~Ai~eGr~AA~~I~~~L~~~  629 (944)
T PRK12779        607 -TAIRAAGDGQAAAKEIVGEIPFT  629 (944)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhccc
Confidence             67899999999999999887653

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.96  E-value=2e-28  Score=249.77  Aligned_cols=279  Identities=17%  Similarity=0.170  Sum_probs=180.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAINI   87 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (369)
                      ..++|+|||||||||+||..|+ +|++|+|+|+.+..|.... .+..+.   ..........+.+  .++++..+.++..
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~r---l~~e~~~~~~~~l~~~Gv~~~~~~~vg~  505 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFR---LPRDIIDREVQRLVDIGVKIETNKVIGK  505 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccC---CCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence            4679999999999999999986 5999999999887653211 111110   0111111111111  1566665544322


Q ss_pred             ecceEEecCCe-EEeccEEEEccCCC-CCCCCChH---HHHH---HHHHHHH------------HHhcCCeEEEEcCChh
Q 046865           88 TENEVLTAEGR-RVVYDYLVIATGHK-DPVPKTRT---ERLN---QYQAENQ------------KIKSARSILIVGGGPT  147 (369)
Q Consensus        88 ~~~~v~~~~g~-~~~~d~lviAtG~~-~~~p~~~~---~~~~---~~~~~~~------------~~~~~~~v~vvG~G~~  147 (369)
                      +   +...+.. ...||+||||||+. |..++++.   ..+.   ++.....            ....+++|+|||||.+
T Consensus       506 ~---~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t  582 (1006)
T PRK12775        506 T---FTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT  582 (1006)
T ss_pred             c---cCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence            1   2221111 24699999999995 55444332   2221   1211111            1235789999999999


Q ss_pred             HHHHHHHHhhhCCCC-eEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC-CCCe-EEEc--------
Q 046865          148 GVELAGEIAVDFPEK-KVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGSD-TYLT--------  216 (369)
Q Consensus       148 g~e~a~~l~~~~~~~-~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~~--------  216 (369)
                      |+++|..+..  .|. .|+++.+....-  ++ .. ..-.+.+++.||++++++.+.++..+ ++.+ .+++        
T Consensus       583 A~D~A~~a~r--lGa~~Vtiv~rr~~~e--m~-a~-~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~  656 (1006)
T PRK12775        583 AMDCLRVAKR--LGAPTVRCVYRRSEAE--AP-AR-IEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEP  656 (1006)
T ss_pred             HHHHHHHHHH--cCCCEEEEEeecCccc--CC-CC-HHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEeccc
Confidence            9999887763  354 688888754321  11 11 11224577889999999988887543 2222 1211        


Q ss_pred             -C--------CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC-----ceeeccCCCeEEecccCCccc
Q 046865          217 -S--------TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE-----NLRVKGQKNIFAIGDITDIRE  280 (369)
Q Consensus       217 -~--------~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~-----~l~~~~~~~i~a~GD~~~~~~  280 (369)
                       .        .|  .++++|.||+|+|..|++.++... .++.++++|.|.+|+     +++| +.|+|||+||++..+ 
T Consensus       657 d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~-  733 (1006)
T PRK12775        657 DEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGG-  733 (1006)
T ss_pred             CCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCc-
Confidence             1        12  269999999999999998765432 234677889999997     6777 799999999998654 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          281 IKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       281 ~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                       .+...|+.+|+.||.+|...+.+..
T Consensus       734 -~~vv~Ai~~Gr~AA~~I~~~L~~~~  758 (1006)
T PRK12775        734 -ATVILAMGAGRRAARSIATYLRLGK  758 (1006)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             3678999999999999999997653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.96  E-value=5.1e-28  Score=230.05  Aligned_cols=272  Identities=16%  Similarity=0.165  Sum_probs=175.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc-cccccCCcccccceeccccccc--cceEEEeeeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGERSVINHTDYLV--NGRIVASPAINI   87 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (369)
                      ..++|+|||||++|+++|..|+ +|++|+++|+.+.++..... +..+   ...........+++.  ++++..+..+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~---~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  216 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSF---KLDKAVLSRRREIFTAMGIEFHLNCEVGR  216 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccc---cCCHHHHHHHHHHHHHCCCEEECCCEeCC
Confidence            5689999999999999999986 59999999998876532110 1000   001111111111111  445543332211


Q ss_pred             ecceEEecCCeEEeccEEEEccCCCCC----CCCChHHHHHH---HHH-----HHH---------HHhcCCeEEEEcCCh
Q 046865           88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTERLNQ---YQA-----ENQ---------KIKSARSILIVGGGP  146 (369)
Q Consensus        88 ~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~~~~~~~---~~~-----~~~---------~~~~~~~v~vvG~G~  146 (369)
                         .+... +....||.+++|||+.+.    +|+.+...+.+   +..     ...         .....++++|+|+|.
T Consensus       217 ---~~~~~-~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~  292 (467)
T TIGR01318       217 ---DISLD-DLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGD  292 (467)
T ss_pred             ---ccCHH-HHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcH
Confidence               11111 123479999999999853    44433222111   100     000         012458999999999


Q ss_pred             hHHHHHHHHhhhCCC-CeEEEEEcCccc-cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEc------
Q 046865          147 TGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLT------  216 (369)
Q Consensus       147 ~g~e~a~~l~~~~~~-~~v~lv~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~------  216 (369)
                      +|+|+|..+..  .+ .+||++++.+.. ++..+     ...+.+++.||++++++.+.++..++ +.+ .+++      
T Consensus       293 ~a~d~A~~a~~--~Ga~~Vtvv~r~~~~~~~~~~-----~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~  365 (467)
T TIGR01318       293 TAMDCVRTAIR--LGAASVTCAYRRDEANMPGSR-----REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALG  365 (467)
T ss_pred             HHHHHHHHHHH--cCCCeEEEEEecCcccCCCCH-----HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEec
Confidence            99999988763  36 579999987653 33322     22345678899999999988875432 222 1221      


Q ss_pred             ---CC---------C--cEEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeC----CceeeccCCCeEEecccCC
Q 046865          217 ---ST---------G--DTIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVD----ENLRVKGQKNIFAIGDITD  277 (369)
Q Consensus       217 ---~~---------g--~~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd----~~l~~~~~~~i~a~GD~~~  277 (369)
                         .+         |  .++++|.||+++|++|+. .++...+  +.++++|++.||    ++++| +.|+|||+|||+.
T Consensus       366 ~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~g--l~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~  442 (467)
T TIGR01318       366 EPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHG--ITLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVR  442 (467)
T ss_pred             ccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccC--ccCCCCCCEEeCCccccCccC-CCCCEEEECCcCC
Confidence               01         2  369999999999999985 4554433  467788999999    67887 7999999999997


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHh
Q 046865          278 IREIKQGFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       278 ~~~~~~~~~A~~~g~~~a~~i~~~~  302 (369)
                      .+.  +...|+.+|+.||.||.+.+
T Consensus       443 ~~~--~~~~Ai~~G~~aA~~i~~~L  465 (467)
T TIGR01318       443 GAD--LVVTAVAEGRQAAQGILDWL  465 (467)
T ss_pred             Ccc--HHHHHHHHHHHHHHHHHHHh
Confidence            543  56899999999999998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.96  E-value=6.1e-28  Score=230.33  Aligned_cols=282  Identities=18%  Similarity=0.208  Sum_probs=175.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAINI   87 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (369)
                      ..++|+|||||++|+++|..|+ +|++|+|+|+.+.++.... .+..+   ...........+++  .++++..+..+..
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~---~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  218 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNM---KLDKAIVDRRIDLLSAEGIDFVTNTEIGV  218 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCc---cCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence            4579999999999999999986 5999999999887652111 01000   00101111111111  1456655443321


Q ss_pred             ecceEEecCCeEEeccEEEEccCCC-CCC---CCChHHHHH---HHHHHH-------------HHHhcCCeEEEEcCChh
Q 046865           88 TENEVLTAEGRRVVYDYLVIATGHK-DPV---PKTRTERLN---QYQAEN-------------QKIKSARSILIVGGGPT  147 (369)
Q Consensus        88 ~~~~v~~~~g~~~~~d~lviAtG~~-~~~---p~~~~~~~~---~~~~~~-------------~~~~~~~~v~vvG~G~~  147 (369)
                      +   +.. +.....||.|++|||+. |..   |+.+...+.   ++....             ......++++|+|+|++
T Consensus       219 ~---~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~  294 (485)
T TIGR01317       219 D---ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT  294 (485)
T ss_pred             c---cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence            1   111 11235799999999998 543   433221111   111100             00135689999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEEcCccccccCC-----cc------hHHHHHHHHHhCCcEE-EeCceeeeccCCC-CCe-E
Q 046865          148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIG-----PK------AGDKTLDWLISKKVDV-KLGQRVNLDSVSE-GSD-T  213 (369)
Q Consensus       148 g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~-----~~------~~~~~~~~l~~~gv~i-~~~~~v~~i~~~~-~~~-~  213 (369)
                      |+|+|..+.. ....+|+++++.++.+....     +.      .....++..+..|+++ ++++.+.++..++ +.+ .
T Consensus       295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~  373 (485)
T TIGR01317       295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA  373 (485)
T ss_pred             HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence            9999776653 34578999998876543211     11      1222333344456654 4566666664332 222 1


Q ss_pred             EEc--------CCC-----------cEEeccEEEEcCCCC-CCchhhcccccCCCCCCCCcEEe-CCceeeccCCCeEEe
Q 046865          214 YLT--------STG-----------DTIKADCHFLCTGKP-VGSDWLKDTILKDSLDTDGMLMV-DENLRVKGQKNIFAI  272 (369)
Q Consensus       214 v~~--------~~g-----------~~i~~d~vi~a~G~~-p~~~~l~~~~~~~~~~~~g~i~v-d~~l~~~~~~~i~a~  272 (369)
                      +++        ++|           .++++|.||+|+|.. |+++++...++  +++++|++.+ |++++| +.|+|||+
T Consensus       374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa  450 (485)
T TIGR01317       374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA  450 (485)
T ss_pred             EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence            221        123           279999999999986 88887765544  6677898865 577887 79999999


Q ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          273 GDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       273 GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      |||+..+.  +...|+.+|+.||.+|...|.+..
T Consensus       451 GD~~~g~~--~~~~Av~~G~~AA~~i~~~L~g~~  482 (485)
T TIGR01317       451 GDCRRGQS--LIVWAINEGRKAAAAVDRYLMGSS  482 (485)
T ss_pred             eccCCCcH--HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99986543  678899999999999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.96  E-value=8.8e-28  Score=237.66  Aligned_cols=273  Identities=16%  Similarity=0.180  Sum_probs=176.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcc--cccceeccccccc--cceEEEeeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF--GERSVINHTDYLV--NGRIVASPAIN   86 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~   86 (369)
                      ..++|+|||||+|||+||..|+ .|++|+|+|+.+.++..+..   . -+.+  ....+....+++.  ++++..+..+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~---g-ip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~  401 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF---G-IPAFKLDKSLLARRREIFSAMGIEFELNCEVG  401 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee---c-CCCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence            4689999999999999999986 59999999998876632211   1 1111  1111111111111  34554333221


Q ss_pred             eecceEEecCCeEEeccEEEEccCCCC----CCCCChHHHH-------H-HHHHHH---HH------HhcCCeEEEEcCC
Q 046865           87 ITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERL-------N-QYQAEN---QK------IKSARSILIVGGG  145 (369)
Q Consensus        87 ~~~~~v~~~~g~~~~~d~lviAtG~~~----~~p~~~~~~~-------~-~~~~~~---~~------~~~~~~v~vvG~G  145 (369)
                      .+   +...+ ....||.+++|||+..    .+|+.....+       . ......   ..      ....++++|||+|
T Consensus       402 ~~---i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG  477 (654)
T PRK12769        402 KD---ISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGG  477 (654)
T ss_pred             Cc---CCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCc
Confidence            11   11111 1246999999999863    3444321111       0 000000   00      1245799999999


Q ss_pred             hhHHHHHHHHhhhCCC-CeEEEEEcCccc-cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC-CCCe-EEEc-----
Q 046865          146 PTGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGSD-TYLT-----  216 (369)
Q Consensus       146 ~~g~e~a~~l~~~~~~-~~v~lv~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~~-----  216 (369)
                      .+|+|+|..+.+  .+ .+|+++++.++. ++..     ....+.+++.||++++++.+.++..+ ++.+ .+++     
T Consensus       478 ~~a~d~A~~a~r--~ga~~Vt~i~~~~~~~~~~~-----~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~  550 (654)
T PRK12769        478 DTAMDCVRTALR--HGASNVTCAYRRDEANMPGS-----KKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRL  550 (654)
T ss_pred             HHHHHHHHHHHH--cCCCeEEEeEecCCCCCCCC-----HHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEe
Confidence            999999987663  35 579999987653 3322     23345678899999999988887533 2322 2221     


Q ss_pred             ----CCC---------c--EEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeCC----ceeeccCCCeEEecccC
Q 046865          217 ----STG---------D--TIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVDE----NLRVKGQKNIFAIGDIT  276 (369)
Q Consensus       217 ----~~g---------~--~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd~----~l~~~~~~~i~a~GD~~  276 (369)
                          .+|         +  ++++|.||+|+|+.|+. .++...  ++.++++|.|.+|+    ++|| +.|+|||+||++
T Consensus       551 ~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~--gl~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~  627 (654)
T PRK12769        551 GEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESH--GVTVDKWGRIIADVESQYRYQT-SNPKIFAGGDAV  627 (654)
T ss_pred             cCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccccc--CCcCCCCCCEEeCCCcccCccc-CCCCEEEcCCcC
Confidence                122         2  69999999999999985 455443  44778899999986    4787 799999999999


Q ss_pred             CccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          277 DIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       277 ~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ..+.  +...|+.+|+.||.+|..+|.+
T Consensus       628 ~g~~--~vv~Ai~~Gr~AA~~I~~~L~~  653 (654)
T PRK12769        628 RGAD--LVVTAMAEGRHAAQGIIDWLGV  653 (654)
T ss_pred             CCCc--HHHHHHHHHHHHHHHHHHHhCc
Confidence            6543  6789999999999999988754

>PRK13984 putative oxidoreductase; Provisional

Probab=99.96  E-value=1.3e-27  Score=235.24  Aligned_cols=279  Identities=18%  Similarity=0.192  Sum_probs=174.3

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccccccCCcccccceecccccc--ccceEEEeeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN   86 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (369)
                      ...++|+|||+|++|+++|..|+ .|++|+|+|+++..+..+. .+...   ...........+++  .+++++.+..+.
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~  357 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSY---RLPDEALDKDIAFIEALGVKIHLNTRVG  357 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcc---cCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence            45689999999999999999997 5999999999887653211 01000   01111111111111  145554443321


Q ss_pred             eecceEEecCCeEEeccEEEEccCCC-C---CCCCChHHHHHHHHHHHH----H-------HhcCCeEEEEcCChhHHHH
Q 046865           87 ITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERLNQYQAENQ----K-------IKSARSILIVGGGPTGVEL  151 (369)
Q Consensus        87 ~~~~~v~~~~g~~~~~d~lviAtG~~-~---~~p~~~~~~~~~~~~~~~----~-------~~~~~~v~vvG~G~~g~e~  151 (369)
                      .+   +...+ ....||+||+|||+. +   .+|+.....+........    .       ...+++++|||||++|+|+
T Consensus       358 ~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~  433 (604)
T PRK13984        358 KD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDI  433 (604)
T ss_pred             Cc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHH
Confidence            11   11111 235799999999986 2   344433221111111111    1       1236899999999999999


Q ss_pred             HHHHhhhC----CCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc--------C-
Q 046865          152 AGEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT--------S-  217 (369)
Q Consensus       152 a~~l~~~~----~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~--------~-  217 (369)
                      |..+.+..    ...+|+++... +....++... ..+.+ +.+.||++++++.+.++..+++.+ .+++        . 
T Consensus       434 A~~l~r~~~~~~g~~~V~v~~~~-r~~~~~~~~~-~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~  510 (604)
T PRK13984        434 ARSMARLQKMEYGEVNVKVTSLE-RTFEEMPADM-EEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEE  510 (604)
T ss_pred             HHHHHhccccccCceEEEEeccc-cCcccCCCCH-HHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCC
Confidence            99987421    23478887432 1222222222 22333 346899999998887765433322 1211        1 


Q ss_pred             ----------CCcEEeccEEEEcCCCCCCchhhcccc-cCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHH
Q 046865          218 ----------TGDTIKADCHFLCTGKPVGSDWLKDTI-LKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL  286 (369)
Q Consensus       218 ----------~g~~i~~d~vi~a~G~~p~~~~l~~~~-~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~  286 (369)
                                +.+++++|.||+|+|++|+++++.... ..+.. ++|+|.||+++|| +.|+|||+||++..+.   ...
T Consensus       511 G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~---~v~  585 (604)
T PRK13984        511 GRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPD---IIH  585 (604)
T ss_pred             CCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchH---HHH
Confidence                      123799999999999999998876431 12233 4688999999998 7999999999997653   467


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q 046865          287 AQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       287 A~~~g~~~a~~i~~~~~g  304 (369)
                      |+.+|+.||.+|.+.|.+
T Consensus       586 Ai~~G~~AA~~I~~~L~~  603 (604)
T PRK13984        586 GVADGYWAAEGIDMYLRK  603 (604)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999988764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.95  E-value=1.5e-26  Score=218.51  Aligned_cols=281  Identities=24%  Similarity=0.345  Sum_probs=205.2

Q ss_pred             EEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccccccccccccCCcccc-cceecc-c-cccccceEE-Eeeeeeee
Q 046865           16 VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGE-RSVINH-T-DYLVNGRIV-ASPAINIT   88 (369)
Q Consensus        16 vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~-~~~~~~~~   88 (369)
                      ++|||+|++|+++|..|+   .+.+++++..++...+....+...+...... ...... . ....++... ...+..+|
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            589999999999999775   3688888888776555444333332221110 001110 0 011234443 34577777


Q ss_pred             c--ceEEecCCeEEeccEEEEccCCCCCCCCC-------hHHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhC
Q 046865           89 E--NEVLTAEGRRVVYDYLVIATGHKDPVPKT-------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF  159 (369)
Q Consensus        89 ~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~  159 (369)
                      +  +.+.+.++ .+.||+|++|||++|..++.       ..................++++|+|+|++|+|+|..+.+  
T Consensus        81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~--  157 (415)
T COG0446          81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAK--  157 (415)
T ss_pred             CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHH--
Confidence            4  47788788 89999999999999887631       111222233333333336899999999999999999985  


Q ss_pred             CCCeEEEEEcCccccccCC-cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE---EEcCCCcEEeccEEEEcCCCCC
Q 046865          160 PEKKVTLVHKGSRLLEFIG-PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT---YLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       160 ~~~~v~lv~~~~~~l~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~---v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .|.+|++++..+++++.+. +++.+.+.+.++++||++++++.+.+++...+...   +...++..+++|.+++++|.+|
T Consensus       158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p  237 (415)
T COG0446         158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP  237 (415)
T ss_pred             cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence            4899999999999998776 89999999999999999999999999886554332   5667788999999999999999


Q ss_pred             CchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc--------chhHHHHHHHHHHHHHHHH
Q 046865          236 GSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI--------KQGFLAQKHAQVAAKNLKV  300 (369)
Q Consensus       236 ~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~--------~~~~~A~~~g~~~a~~i~~  300 (369)
                      |..+......+ ....+|++.||+++++...++||++|||+..+..        ...+.|..++++++.++..
T Consensus       238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~  309 (415)
T COG0446         238 NVVLANDALPG-LALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG  309 (415)
T ss_pred             cHHHHhhCccc-eeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence            97776665422 3456789999999998338999999999876432        2346788899999999873

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.95  E-value=1.9e-27  Score=208.99  Aligned_cols=293  Identities=19%  Similarity=0.257  Sum_probs=210.9

Q ss_pred             ccccccCCCcceEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccccccccc----cccCCccc------------c
Q 046865            4 QRQQQSEGKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLR----AMVEPSFG------------E   64 (369)
Q Consensus         4 ~~~~~~~~~~~~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~~~~~~~----~~~~~~~~------------~   64 (369)
                      +|+.....++.-.+|||+|.+..+++...+   .+.+|.+|..++.+.+....+.    .+-++...            .
T Consensus       169 ~P~~~~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeR  248 (659)
T KOG1346|consen  169 PPSSEDLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKER  248 (659)
T ss_pred             CCccccCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccc
Confidence            344444456778899999999998888775   3789999988765543221111    11111100            0


Q ss_pred             cceecccccc-----------ccceEEEe-eeeeeec--ceEEecCCeEEeccEEEEccCCCCCCCC-Ch----------
Q 046865           65 RSVINHTDYL-----------VNGRIVAS-PAINITE--NEVLTAEGRRVVYDYLVIATGHKDPVPK-TR----------  119 (369)
Q Consensus        65 ~~~~~~~~~~-----------~~~~~~~~-~~~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~-~~----------  119 (369)
                      ..+..-..||           .++-+.++ .++.+|.  +.|.+.||.+|.||.++||||.+|.-.. ++          
T Consensus       249 siffepd~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~ki  328 (659)
T KOG1346|consen  249 SIFFEPDGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKI  328 (659)
T ss_pred             eeEecCCcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhhe
Confidence            0111111111           13444444 4556664  4789999999999999999999986432 11          


Q ss_pred             --HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCC--CCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCc
Q 046865          120 --TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFP--EKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       120 --~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~--~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv  194 (369)
                        .....+|..+.......++|.|||+|+.|.|+|..|.+.+.  +.+|+-+......+. -++.-+++...+.+++.||
T Consensus       329 t~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV  408 (659)
T KOG1346|consen  329 TYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGV  408 (659)
T ss_pred             eEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCc
Confidence              11224455555555566899999999999999999987554  567776655443332 3455788888899999999


Q ss_pred             EEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCC-CCcEEeCCceeeccCCCeEEec
Q 046865          195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT-DGMLMVDENLRVKGQKNIFAIG  273 (369)
Q Consensus       195 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~-~g~i~vd~~l~~~~~~~i~a~G  273 (369)
                      .++.|..|..+......+.+.++||.++..|.|++|+|-.||+++....++.  .|+ -|.+.||..|+.  ..|||++|
T Consensus       409 ~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe--iD~~lGGfrvnaeL~a--r~NvwvAG  484 (659)
T KOG1346|consen  409 DVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE--IDEKLGGFRVNAELKA--RENVWVAG  484 (659)
T ss_pred             eeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccce--eecccCcEEeeheeec--ccceeeec
Confidence            9999999999988878888999999999999999999999999999988884  444 378999999997  69999999


Q ss_pred             ccCCccccchh-------HHHHHHHHHHHHHHHH
Q 046865          274 DITDIREIKQG-------FLAQKHAQVAAKNLKV  300 (369)
Q Consensus       274 D~~~~~~~~~~-------~~A~~~g~~~a~~i~~  300 (369)
                      |++.+..+.++       -+|+-.||.|++||..
T Consensus       485 daacF~D~~LGrRRVehhdhavvSGRLAGENMtg  518 (659)
T KOG1346|consen  485 DAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTG  518 (659)
T ss_pred             chhhhhcccccceeccccccceeeceeccccccc
Confidence            99987655443       2677889999999973

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.95  E-value=1.9e-26  Score=227.29  Aligned_cols=275  Identities=17%  Similarity=0.205  Sum_probs=176.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCC-cccccceecccccc--ccceEEEeeeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGERSVINHTDYL--VNGRIVASPAINI   87 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (369)
                      ..++|+|||||++||++|..|+ .|++|+++|+++.++..+.   ..+.+ .+.........+++  .++++..+.....
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT---FGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee---ccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC
Confidence            4789999999999999999986 5999999999987663211   11110 01111111111111  1455544332211


Q ss_pred             ecceEEecCCeEEeccEEEEccCCCC----CCCCChHHHHH---HHH-----HHH---H------HHhcCCeEEEEcCCh
Q 046865           88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLN---QYQ-----AEN---Q------KIKSARSILIVGGGP  146 (369)
Q Consensus        88 ~~~~v~~~~g~~~~~d~lviAtG~~~----~~p~~~~~~~~---~~~-----~~~---~------~~~~~~~v~vvG~G~  146 (369)
                         .+...+ ....||.+++|||+.+    .+|+.+...+.   ++.     ...   .      .....++++|+|+|.
T Consensus       386 ---~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~  461 (639)
T PRK12809        386 ---DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD  461 (639)
T ss_pred             ---cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence               111111 2357999999999973    24443221111   011     000   0      012468999999999


Q ss_pred             hHHHHHHHHhhhCCC-CeEEEEEcCccc-cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeE-EEc---C--
Q 046865          147 TGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDT-YLT---S--  217 (369)
Q Consensus       147 ~g~e~a~~l~~~~~~-~~v~lv~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~-v~~---~--  217 (369)
                      ++++.|..+..  .| .+|+++++.++. ++..+    ..+ ..+++.||++++++.+.++..++ +.+. +.+   .  
T Consensus       462 ~a~d~a~~~~~--~Ga~~Vt~v~rr~~~~~~~~~----~e~-~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~  534 (639)
T PRK12809        462 TTMDCLRTSIR--LNAASVTCAYRRDEVSMPGSR----KEV-VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMG  534 (639)
T ss_pred             HHHHHHHHHHH--cCCCeEEEeeecCcccCCCCH----HHH-HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEec
Confidence            99999987653  35 589999987654 33222    222 23577899999999988886432 2221 211   1  


Q ss_pred             ----CC-----------cEEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeCC----ceeeccCCCeEEecccCC
Q 046865          218 ----TG-----------DTIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVDE----NLRVKGQKNIFAIGDITD  277 (369)
Q Consensus       218 ----~g-----------~~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd~----~l~~~~~~~i~a~GD~~~  277 (369)
                          +|           .++++|.||+|+|+.|+. .++..  +++.++++|+|.+|+    ++|| +.|+|||+||++.
T Consensus       535 ~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~--~gl~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~  611 (639)
T PRK12809        535 EPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQG--SGIKLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVH  611 (639)
T ss_pred             CcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccc--cCcccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCC
Confidence                12           268999999999999874 44444  344678889999986    3787 7999999999996


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865          278 IREIKQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       278 ~~~~~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                      .+.  +...|+.+|+.||.+|...|.+.
T Consensus       612 g~~--~vv~Ai~~Gr~AA~~i~~~l~~~  637 (639)
T PRK12809        612 GAD--LVVTAMAAGRQAARDMLTLFDTK  637 (639)
T ss_pred             Cch--HHHHHHHHHHHHHHHHHHHHhhh
Confidence            543  67899999999999999888653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.94  E-value=8.9e-26  Score=231.65  Aligned_cols=273  Identities=13%  Similarity=0.075  Sum_probs=177.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccce-eccccc---cccceEEE-eeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSV-INHTDY---LVNGRIVA-SPAI   85 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~-~~~~   85 (369)
                      ..+||+|||||||||+||..|+ .|++|+|||+++.++..+........ ......+ ....+.   +.++++.. .++.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~-g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~  240 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETID-GKPAADWAAATVAELTAMPEVTLLPRTTAF  240 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccC-CccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence            4689999999999999999986 59999999998877643321110010 0000000 011111   12344443 2333


Q ss_pred             eeecc-eE------E----------e-cCCeEEeccEEEEccCCCCCCCCCh---HHHHHH---HHHHHH--HHhcCCeE
Q 046865           86 NITEN-EV------L----------T-AEGRRVVYDYLVIATGHKDPVPKTR---TERLNQ---YQAENQ--KIKSARSI  139 (369)
Q Consensus        86 ~~~~~-~v------~----------~-~~g~~~~~d~lviAtG~~~~~p~~~---~~~~~~---~~~~~~--~~~~~~~v  139 (369)
                      .+... .+      .          . +...++.||+||||||+.+..|+++   ...+..   ......  ....++++
T Consensus       241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~V  320 (985)
T TIGR01372       241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRI  320 (985)
T ss_pred             EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeE
Confidence            33221 00      0          0 0112689999999999996655432   222111   111111  12357899


Q ss_pred             EEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC-
Q 046865          140 LIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS-  217 (369)
Q Consensus       140 ~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~-  217 (369)
                      +|+|+|++++|+|..|.+  .+ ..|+++++.+.+        ...+.+.+++.||++++++.+.++..++....+++. 
T Consensus       321 vViG~G~~g~e~A~~L~~--~G~~vV~vv~~~~~~--------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~  390 (985)
T TIGR01372       321 VVATNNDSAYRAAADLLA--AGIAVVAIIDARADV--------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVAR  390 (985)
T ss_pred             EEECCCHHHHHHHHHHHH--cCCceEEEEccCcch--------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEe
Confidence            999999999999999985  36 467888776533        345677889999999999999988754432233332 


Q ss_pred             ---CCcEEeccEEEEcCCCCCCchhhcccccCCCCCCC--CcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHH
Q 046865          218 ---TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTD--GMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQ  292 (369)
Q Consensus       218 ---~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~--g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~  292 (369)
                         +++++++|.|+++.|.+||++++...+..+..++.  +++.      .++.|+||++||+++..   ....|..+|+
T Consensus       391 ~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~~---~~~~A~~eG~  461 (985)
T TIGR01372       391 NGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGLF---GLAAALADGA  461 (985)
T ss_pred             cCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCcc---CHHHHHHHHH
Confidence               45689999999999999999988766554333332  2221      23689999999999765   3567999999


Q ss_pred             HHHHHHHHHhhC
Q 046865          293 VAAKNLKVLMVG  304 (369)
Q Consensus       293 ~~a~~i~~~~~g  304 (369)
                      .||..|+..+..
T Consensus       462 ~Aa~~i~~~lg~  473 (985)
T TIGR01372       462 AAGAAAARAAGF  473 (985)
T ss_pred             HHHHHHHHHcCC
Confidence            999999877643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.94  E-value=2.3e-25  Score=217.22  Aligned_cols=277  Identities=20%  Similarity=0.251  Sum_probs=176.9

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc-cccccCCcccccceecccccc--ccceEEEeeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN   86 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (369)
                      ...++|+|||+||+||++|..|+ .|++|+++|+.+.++..+.. +..+   .+.........+.+  .++++..+....
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAY---RLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCc---cCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            44679999999999999999986 59999999998877642210 1000   00100000001111  134443332211


Q ss_pred             eecceEEecCCeEEeccEEEEccCCCCC----CCCChHHHHH---HHHHH---HHHHhcCCeEEEEcCChhHHHHHHHHh
Q 046865           87 ITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTERLN---QYQAE---NQKIKSARSILIVGGGPTGVELAGEIA  156 (369)
Q Consensus        87 ~~~~~v~~~~g~~~~~d~lviAtG~~~~----~p~~~~~~~~---~~~~~---~~~~~~~~~v~vvG~G~~g~e~a~~l~  156 (369)
                      .+.   .. +.....||++++|||+...    +|+.......   .+...   .......++++|+|+|.++++.+..+.
T Consensus       212 ~~~---~~-~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~  287 (564)
T PRK12771        212 EDI---TL-EQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTAR  287 (564)
T ss_pred             CcC---CH-HHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHH
Confidence            110   00 0012358999999998743    3332211111   11110   011234789999999999999998665


Q ss_pred             hhCCCCeEEEEEcCccc-cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe------EEEc----CC-------
Q 046865          157 VDFPEKKVTLVHKGSRL-LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD------TYLT----ST-------  218 (369)
Q Consensus       157 ~~~~~~~v~lv~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~------~v~~----~~-------  218 (369)
                      + ....+|+++.+.+.. ++.    ....+. .+.+.||++++++.+.++..+++..      .+..    .+       
T Consensus       288 ~-lga~~v~ii~r~~~~~~~~----~~~~~~-~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~  361 (564)
T PRK12771        288 R-LGAEEVTIVYRRTREDMPA----HDEEIE-EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVT  361 (564)
T ss_pred             H-cCCCEEEEEEecCcccCCC----CHHHHH-HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecC
Confidence            3 334789999887642 222    222333 3456899999999998886543321      1221    12       


Q ss_pred             C--cEEeccEEEEcCCCCCCchhhcc-cccCCCCCCCCcEEeCC-ceeeccCCCeEEecccCCccccchhHHHHHHHHHH
Q 046865          219 G--DTIKADCHFLCTGKPVGSDWLKD-TILKDSLDTDGMLMVDE-NLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVA  294 (369)
Q Consensus       219 g--~~i~~d~vi~a~G~~p~~~~l~~-~~~~~~~~~~g~i~vd~-~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~  294 (369)
                      |  .++++|.||+|+|..|+++++.. .++  . +++|+|.||+ +++| +.|+|||+||++..+  ++...|+.+|+.+
T Consensus       362 g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~--~~v~~Av~~G~~a  435 (564)
T PRK12771        362 GEEETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPGP--RTVTTAIGHGKKA  435 (564)
T ss_pred             CceEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccC-CCCCEEeccCcCCCc--hHHHHHHHHHHHH
Confidence            2  37999999999999999888764 333  4 6789999998 5665 899999999998654  4778999999999


Q ss_pred             HHHHHHHhhCCC
Q 046865          295 AKNLKVLMVGER  306 (369)
Q Consensus       295 a~~i~~~~~g~~  306 (369)
                      |.+|.+.+.|..
T Consensus       436 A~~i~~~L~g~~  447 (564)
T PRK12771        436 ARNIDAFLGGEP  447 (564)
T ss_pred             HHHHHHHHcCCC
Confidence            999999998754

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.93  E-value=1.2e-24  Score=204.87  Aligned_cols=286  Identities=14%  Similarity=0.106  Sum_probs=173.7

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccccccccccccCCcccc-cc-eecccccc--ccceEEE
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGE-RS-VINHTDYL--VNGRIVA   81 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~--~~~~~~~   81 (369)
                      +....++|+|||||||||+||..|.   +|++|+|+|+.+..+.   .++..+.+.... .. ...+..++  .+++|+.
T Consensus        22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG---lvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~   98 (491)
T PLN02852         22 STSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG---LVRSGVAPDHPETKNVTNQFSRVATDDRVSFFG   98 (491)
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc---eEeeccCCCcchhHHHHHHHHHHHHHCCeEEEc
Confidence            3445689999999999999999885   4999999999987653   333223232221 10 11111111  2345443


Q ss_pred             eeeeeeecceEEecCCeEEeccEEEEccCCCC----CCCCChHHHH---HHHH----------HHHHHHhcCCeEEEEcC
Q 046865           82 SPAINITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERL---NQYQ----------AENQKIKSARSILIVGG  144 (369)
Q Consensus        82 ~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~----~~p~~~~~~~---~~~~----------~~~~~~~~~~~v~vvG~  144 (369)
                      +..+  . +.+.+++. ...||++|+|||+.+    .+|+.+...+   .++.          .........++++|||+
T Consensus        99 nv~v--g-~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGg  174 (491)
T PLN02852         99 NVTL--G-RDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQ  174 (491)
T ss_pred             CEEE--C-ccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECC
Confidence            3222  1 12333332 347999999999974    2454321111   1111          11111235789999999


Q ss_pred             ChhHHHHHHHHhhh------------------C-CCCeEEEEEcCccccc-cCCcc------------------------
Q 046865          145 GPTGVELAGEIAVD------------------F-PEKKVTLVHKGSRLLE-FIGPK------------------------  180 (369)
Q Consensus       145 G~~g~e~a~~l~~~------------------~-~~~~v~lv~~~~~~l~-~~~~~------------------------  180 (369)
                      |++|+|+|..|.+.                  . .-.+|+++.|....-. ...++                        
T Consensus       175 GnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~  254 (491)
T PLN02852        175 GNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPE  254 (491)
T ss_pred             CHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccc
Confidence            99999999987631                  1 2357999998763210 00011                        


Q ss_pred             -------------hHHHHHHHHHh---------CCcEEEeCceeeeccC--CC-CCe-EEEcC-----------------
Q 046865          181 -------------AGDKTLDWLIS---------KKVDVKLGQRVNLDSV--SE-GSD-TYLTS-----------------  217 (369)
Q Consensus       181 -------------~~~~~~~~l~~---------~gv~i~~~~~v~~i~~--~~-~~~-~v~~~-----------------  217 (369)
                                   ..+.+.+...+         ++|.+++.....++..  ++ +.+ .+++.                 
T Consensus       255 ~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~  334 (491)
T PLN02852        255 DEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVG  334 (491)
T ss_pred             hhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCC
Confidence                         11222222222         5788888877777752  11 211 12110                 


Q ss_pred             CCc--EEeccEEEEcCCCC--CCchh-hcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHH
Q 046865          218 TGD--TIKADCHFLCTGKP--VGSDW-LKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQ  292 (369)
Q Consensus       218 ~g~--~i~~d~vi~a~G~~--p~~~~-l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~  292 (369)
                      +|+  ++++|.||.+.|++  |...+ +... .++..+.+|+|.+|+.++| +.|+|||+|||...|.- ....++.+|+
T Consensus       335 tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~-~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~g-vI~t~~~dA~  411 (491)
T PLN02852        335 TGEFEDLPCGLVLKSIGYKSLPVDGLPFDHK-RGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPTG-IIGTNLTCAE  411 (491)
T ss_pred             CCCEEEEECCEEEEeecCCCCCCCCCccccC-cCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCCC-eeeecHhhHH
Confidence            232  68999999999998  55543 2221 1234577899999988887 79999999999976532 3457889999


Q ss_pred             HHHHHHHHHhhC
Q 046865          293 VAAKNLKVLMVG  304 (369)
Q Consensus       293 ~~a~~i~~~~~g  304 (369)
                      .++.+|...+..
T Consensus       412 ~ta~~i~~d~~~  423 (491)
T PLN02852        412 ETVASIAEDLEQ  423 (491)
T ss_pred             HHHHHHHHHHHc
Confidence            999999988754

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.7e-24  Score=172.99  Aligned_cols=278  Identities=19%  Similarity=0.258  Sum_probs=189.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc-ccccccc----CCcccccc----eec-ccc--ccccceE
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW-ASLRAMV----EPSFGERS----VIN-HTD--YLVNGRI   79 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~-~~~~~~~----~~~~~~~~----~~~-~~~--~~~~~~~   79 (369)
                      +.+|+|||+|||+.+||++++ ...+-+|+|-.-.-+..+ ..+....    -|.|++-.    +.+ .++  ..-+.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            459999999999999998876 488999999543222211 1111100    12222111    110 010  0115677


Q ss_pred             EEeeeeeeecc----eEEecCCeEEeccEEEEccCCCC---CCCCC-hHHH----HHHHHHH--HHHHhcCCeEEEEcCC
Q 046865           80 VASPAINITEN----EVLTAEGRRVVYDYLVIATGHKD---PVPKT-RTER----LNQYQAE--NQKIKSARSILIVGGG  145 (369)
Q Consensus        80 ~~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~---~~p~~-~~~~----~~~~~~~--~~~~~~~~~v~vvG~G  145 (369)
                      +..++..+|..    .+.+ +.+.+.+|.+|+|||+..   .+|+. +...    +..+.-.  ...+...+..+|||||
T Consensus        88 ~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGG  166 (322)
T KOG0404|consen   88 ITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGG  166 (322)
T ss_pred             eeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCc
Confidence            77777777643    4444 567899999999999984   36664 2211    1112111  2234677899999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceeeeccCCCC---CeEEE-cCCC-
Q 046865          146 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEG---SDTYL-TSTG-  219 (369)
Q Consensus       146 ~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~---~~~v~-~~~g-  219 (369)
                      .+++|-|.+|.+.  +++|++++|.+.+      +.+..++++.++ .+|++++|+.+.+...+.+   .+.+. +..| 
T Consensus       167 DsA~EEA~fLtky--askVyii~Rrd~f------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge  238 (322)
T KOG0404|consen  167 DSAMEEALFLTKY--ASKVYIIHRRDHF------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGE  238 (322)
T ss_pred             HHHHHHHHHHHhh--ccEEEEEEEhhhh------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCc
Confidence            9999999999853  8999999999877      667777776654 5899999998876654432   23332 2233 


Q ss_pred             -cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHH
Q 046865          220 -DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL  298 (369)
Q Consensus       220 -~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i  298 (369)
                       ..++.+-++++.|..|++.+++.   .+++|++|+|.+-+.-..++.|++||+||+.+... .++..|.-.|.++|-..
T Consensus       239 ~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ky-RQAvTaAgsGciaaldA  314 (322)
T KOG0404|consen  239 ETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKY-RQAVTAAGSGCIAALDA  314 (322)
T ss_pred             ccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCcccccccceeeccccchHHH-HHHHhhhccchhhhhhH
Confidence             47999999999999999999986   34789999999986544458999999999998643 46667777777777666


Q ss_pred             HHHhh
Q 046865          299 KVLMV  303 (369)
Q Consensus       299 ~~~~~  303 (369)
                      -++|.
T Consensus       315 e~yL~  319 (322)
T KOG0404|consen  315 ERYLT  319 (322)
T ss_pred             HHHhh
Confidence            55543

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.92  E-value=4.7e-24  Score=181.74  Aligned_cols=289  Identities=19%  Similarity=0.259  Sum_probs=191.2

Q ss_pred             CCcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccc--ccceeccccc-cccceEEEeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTDY-LVNGRIVASPA   84 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~   84 (369)
                      ..+++|+|||||.+|+++|..+.+   .-+|.+||+.+++.+.+...  ++.....  ........+. .++..|++..+
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfT--LvGgGl~~l~~srr~~a~liP~~a~wi~ekv  114 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFT--LVGGGLKSLDSSRRKQASLIPKGATWIKEKV  114 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceE--EeccchhhhhhccCcccccccCCcHHHHHHH
Confidence            468999999999999999988753   35899999988776543221  1111000  0111111222 23567777778


Q ss_pred             eeeec--ceEEecCCeEEeccEEEEccCCCCC---CCCCh-------------HHHHHHHHHHHHHHhcCCeEEEEcCCh
Q 046865           85 INITE--NEVLTAEGRRVVYDYLVIATGHKDP---VPKTR-------------TERLNQYQAENQKIKSARSILIVGGGP  146 (369)
Q Consensus        85 ~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~---~p~~~-------------~~~~~~~~~~~~~~~~~~~v~vvG~G~  146 (369)
                      ..+++  ++|.+.+|++|.|||+|||+|..-+   +++..             ...++.........+.+..+.-.-.++
T Consensus       115 ~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntp  194 (446)
T KOG3851|consen  115 KEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTP  194 (446)
T ss_pred             HhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCc
Confidence            77765  4899999999999999999998732   33321             122333333334444444443333333


Q ss_pred             h--------HHHHHHH-HhhhCCCCeEEEEE--cCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE
Q 046865          147 T--------GVELAGE-IAVDFPEKKVTLVH--KGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL  215 (369)
Q Consensus       147 ~--------g~e~a~~-l~~~~~~~~v~lv~--~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~  215 (369)
                      +        .+-++.. ++++-...++.++.  .-+.+..  -+...+++++..++++|++.......+++.++..-..+
T Consensus       195 iKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg--Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe  272 (446)
T KOG3851|consen  195 IKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG--VKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE  272 (446)
T ss_pred             cccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec--HHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH
Confidence            2        2333322 33221123444444  3333332  24678899999999999999988888887655432222


Q ss_pred             -cCC-C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC-ceeeccCCCeEEecccCCccccchhHHHHHH
Q 046865          216 -TST-G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE-NLRVKGQKNIFAIGDITDIREIKQGFLAQKH  290 (369)
Q Consensus       216 -~~~-g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~-~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~  290 (369)
                       +.+ |  ++++++++-+....++ ++.+..+.+   .|+.||+.||. .+|++.+||||++|||.+.|..|++..+..|
T Consensus       273 ~L~kPG~t~ei~yslLHv~Ppms~-pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq  348 (446)
T KOG3851|consen  273 NLDKPGVTEEIEYSLLHVTPPMST-PEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQ  348 (446)
T ss_pred             hcCCCCceeEEeeeeeeccCCCCC-hhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhc
Confidence             222 4  4789999999887775 566666553   67899999995 6999999999999999999999888888899


Q ss_pred             HHHHHHHHHHHhhCCCc
Q 046865          291 AQVAAKNLKVLMVGERE  307 (369)
Q Consensus       291 g~~~a~~i~~~~~g~~~  307 (369)
                      ..++-+|+...++|+.+
T Consensus       349 ~~vv~~nl~~~m~g~~p  365 (446)
T KOG3851|consen  349 SPVVDKNLTQVMQGKRP  365 (446)
T ss_pred             CchhhhhHHHHhcCCCc
Confidence            99999999999988653

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=9.5e-25  Score=188.04  Aligned_cols=276  Identities=21%  Similarity=0.238  Sum_probs=181.9

Q ss_pred             CCCcceEEEECCChHHHHHHHHc-ccCCcEEEEcCCCCcccccc---ccccccCCcccc-cc----eeccccccccceEE
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWA---SLRAMVEPSFGE-RS----VINHTDYLVNGRIV   80 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l-~~g~~V~lie~~~~~~~~~~---~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~   80 (369)
                      ....|||+||||||||.+||.+. ++|.+.-|+-.  .||....   .+..++...... ..    +..+.+.+ .+++.
T Consensus       208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y-~vDim  284 (520)
T COG3634         208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY-DVDVM  284 (520)
T ss_pred             ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhc-Cchhh
Confidence            34579999999999999999765 56877666542  3443221   111111111000 00    00000000 11111


Q ss_pred             E-eeeeeee-------cceEEecCCeEEeccEEEEccCCCCC---CCCChHH---HHHHHHHHHHHHhcCCeEEEEcCCh
Q 046865           81 A-SPAINIT-------ENEVLTAEGRRVVYDYLVIATGHKDP---VPKTRTE---RLNQYQAENQKIKSARSILIVGGGP  146 (369)
Q Consensus        81 ~-~~~~~~~-------~~~v~~~~g~~~~~d~lviAtG~~~~---~p~~~~~---~~~~~~~~~~~~~~~~~v~vvG~G~  146 (369)
                      . .++..+.       ...|.+.+|..+..+.+|++||++++   +|+.+..   .+..+......+...+++.|||||.
T Consensus       285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGN  364 (520)
T COG3634         285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGN  364 (520)
T ss_pred             hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCc
Confidence            1 1111221       12688889999999999999999954   6664211   1111222234457789999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCe-EEEc---CCCc-
Q 046865          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSD-TYLT---STGD-  220 (369)
Q Consensus       147 ~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~-  220 (369)
                      +|+|.|..|+-  .-..||+++-.+.+      +.-+.+++.++.. +|+|++|..-+++..+++.+ .+..   .+|+ 
T Consensus       365 SGvEAAIDLAG--iv~hVtllEF~~eL------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~  436 (520)
T COG3634         365 SGVEAAIDLAG--IVEHVTLLEFAPEL------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE  436 (520)
T ss_pred             chHHHHHhHHh--hhheeeeeecchhh------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence            99999999972  35689999765544      4456677777664 89999999999988764432 2222   2343 


Q ss_pred             -EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          221 -TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       221 -~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                       .+.-+-|++-.|..||++||+..   ++++++|.|.||....| +.|+|||+|||...+. |+...|+-+|..|+-...
T Consensus       437 ~~l~LeGvFVqIGL~PNT~WLkg~---vel~~rGEIivD~~g~T-svpGvFAAGD~T~~~y-KQIIIamG~GA~AaL~AF  511 (520)
T COG3634         437 HHLELEGVFVQIGLLPNTEWLKGA---VELNRRGEIIVDARGET-NVPGVFAAGDCTTVPY-KQIIIAMGEGAKASLSAF  511 (520)
T ss_pred             eEEEeeeeEEEEecccChhHhhch---hhcCcCccEEEecCCCc-CCCceeecCcccCCcc-ceEEEEecCcchhhhhhh
Confidence             56778899999999999999876   37899999999999998 7999999999998764 455566666666665554


Q ss_pred             HH
Q 046865          300 VL  301 (369)
Q Consensus       300 ~~  301 (369)
                      .+
T Consensus       512 Dy  513 (520)
T COG3634         512 DY  513 (520)
T ss_pred             hh
Confidence            43

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.90  E-value=4.2e-23  Score=195.03  Aligned_cols=269  Identities=16%  Similarity=0.204  Sum_probs=162.4

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccc------------------c-------------
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM------------------V-------------   58 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~------------------~-------------   58 (369)
                      ...++|+|||||++||+||++|. .|.+|+++|+++.+|..|..-...                  .             
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~   87 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG   87 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence            34689999999999999999986 599999999999888666321000                  0             


Q ss_pred             CCcccc-----------cceeccc---ccc----c--cce---EEEeeeeeeecc----eEEecCC----eEEeccEEEE
Q 046865           59 EPSFGE-----------RSVINHT---DYL----V--NGR---IVASPAINITEN----EVLTAEG----RRVVYDYLVI  107 (369)
Q Consensus        59 ~~~~~~-----------~~~~~~~---~~~----~--~~~---~~~~~~~~~~~~----~v~~~~g----~~~~~d~lvi  107 (369)
                      -.+++.           ..+....   +++    .  ++.   .+..+|+.++..    .|.+.++    .+..||+||+
T Consensus        88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIv  167 (461)
T PLN02172         88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVV  167 (461)
T ss_pred             CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEE
Confidence            000100           0000000   111    0  122   134556666532    3444322    2467999999


Q ss_pred             ccC--CCCCCCCChHH------HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCc
Q 046865          108 ATG--HKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGP  179 (369)
Q Consensus       108 AtG--~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~  179 (369)
                      |||  +.|.+|.++..      .++............++|+|||+|.+|+|+|.+|...  +++|++++|......    
T Consensus       168 AtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~--a~~V~l~~r~~~~~~----  241 (461)
T PLN02172        168 CNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKV--AKEVHIASRASESDT----  241 (461)
T ss_pred             eccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHh--CCeEEEEEeeccccc----
Confidence            999  56776665321      1111111112234679999999999999999999853  789999998764311    


Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcE-EeC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGML-MVD  258 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i-~vd  258 (369)
                            .+.+......+..+..|..+..+ +  .|++.||+++++|.||+|||++|+.+||...+. +..+++ .+ ..-
T Consensus       242 ------~~~~~~~~~~v~~~~~I~~~~~~-g--~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~-~v~~Ly  310 (461)
T PLN02172        242 ------YEKLPVPQNNLWMHSEIDTAHED-G--SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDEN-RVEPLY  310 (461)
T ss_pred             ------cccCcCCCCceEECCcccceecC-C--eEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCC-cchhhH
Confidence                  01111223445566666654322 2  477889999999999999999999998764321 112221 11 111


Q ss_pred             Cceeecc-CCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          259 ENLRVKG-QKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       259 ~~l~~~~-~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      +++-... .|+++.+|=.....   ....+..|++.+|+-+.
T Consensus       311 ~~~f~~~~~p~LafiG~~~~~~---~f~~~E~Qa~~~a~v~s  349 (461)
T PLN02172        311 KHVFPPALAPGLSFIGLPAMGI---QFVMFEIQSKWVAAVLS  349 (461)
T ss_pred             HhhcCCCCCCcEEEEecccccc---CchhHHHHHHHHHHHHc
Confidence            1211222 48999999653222   23577889999888776

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.81  E-value=9.9e-19  Score=172.95  Aligned_cols=266  Identities=14%  Similarity=0.099  Sum_probs=148.5

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc---------cccccc------------ccCCccc----c
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT---------WASLRA------------MVEPSFG----E   64 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~---------~~~~~~------------~~~~~~~----~   64 (369)
                      ...++|+|||||||||+||+.|+ +|++|+++|+.+..+.+         |..+..            ...-.++    .
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k  460 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDK  460 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchH
Confidence            45789999999999999999996 69999999986432211         111000            0000011    0


Q ss_pred             cceecccccc---ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCC-CCCCC---CChHHHHHHHHHHHHH-----
Q 046865           65 RSVINHTDYL---VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH-KDPVP---KTRTERLNQYQAENQK-----  132 (369)
Q Consensus        65 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~p---~~~~~~~~~~~~~~~~-----  132 (369)
                      .........+   .++++..+.....+   +..++-....||+++||||+ .|..+   +.+...+.+..+....     
T Consensus       461 ~~l~~i~~il~~g~~v~~~~gv~lG~d---it~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~~  537 (1028)
T PRK06567        461 NNLDILRLILERNNNFKYYDGVALDFN---ITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSGG  537 (1028)
T ss_pred             HHHHHHHHHHhcCCceEEECCeEECcc---CCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhcc
Confidence            0000000000   12333333222111   12222134679999999999 45544   4332222111111111     


Q ss_pred             ---------HhcCCeEEEEcCChhHHHHHHHHhhh---------------------------------------------
Q 046865          133 ---------IKSARSILIVGGGPTGVELAGEIAVD---------------------------------------------  158 (369)
Q Consensus       133 ---------~~~~~~v~vvG~G~~g~e~a~~l~~~---------------------------------------------  158 (369)
                               ....++++|||||.+|+|+|......                                             
T Consensus       538 ~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~  617 (1028)
T PRK06567        538 AFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELR  617 (1028)
T ss_pred             cccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhh
Confidence                     11357899999999999999832210                                             


Q ss_pred             ---CCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeE-EEc---------------C-
Q 046865          159 ---FPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDT-YLT---------------S-  217 (369)
Q Consensus       159 ---~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~-v~~---------------~-  217 (369)
                         .....|+++.|..+--....+...+.+.+ ..+.||+++.+....++..++ +.++ +++               . 
T Consensus       618 ~l~~~~G~VtIvYRr~~~empA~~~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~  696 (1028)
T PRK06567        618 KVFNKLGGATVYYRGRLQDSPAYKLNHEELIY-ALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSH  696 (1028)
T ss_pred             hhhccCCceEEEecCChhhCCCCCCCHHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccccccccccccc
Confidence               00112888888764322111112344444 445799999998888776543 2211 111               1 


Q ss_pred             --------------CCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865          218 --------------TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ  283 (369)
Q Consensus       218 --------------~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~  283 (369)
                                    ...+++||.||+|+|..||+.+..         .      +..+-. +.+++|+-          +
T Consensus       697 ~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~---------~------~~s~~~-d~~~~f~G----------t  750 (1028)
T PRK06567        697 EFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE---------D------KYSYFG-DCNPKYSG----------S  750 (1028)
T ss_pred             ccccCCcCcccCCCccccccCCEEEEecccCCcccccc---------c------cccccc-CCCCcccc----------H
Confidence                          113689999999999999886520         0      001111 35556654          4


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCC
Q 046865          284 GFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      ...|+.+|+.++.+|.+.+...+
T Consensus       751 vv~A~as~k~~~~~i~~~l~~~~  773 (1028)
T PRK06567        751 VVKALASSKEGYDAINKKLINNN  773 (1028)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhCC
Confidence            67899999999999988876543

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.81  E-value=8e-19  Score=168.13  Aligned_cols=273  Identities=23%  Similarity=0.330  Sum_probs=134.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc-----------ccc---------CCccc--c--cce
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-----------AMV---------EPSFG--E--RSV   67 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~-----------~~~---------~~~~~--~--~~~   67 (369)
                      +++|+|||||++||++|+.|. .|++++++|+++.+|+.|..-.           ...         -.+++  .  ..+
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            368999999999999999875 6999999999999998774210           000         00111  0  001


Q ss_pred             eccc---ccc----------ccceEEEeeeeeeec--------c-eEEec-CC--eEEeccEEEEccCCC--CCCC----
Q 046865           68 INHT---DYL----------VNGRIVASPAINITE--------N-EVLTA-EG--RRVVYDYLVIATGHK--DPVP----  116 (369)
Q Consensus        68 ~~~~---~~~----------~~~~~~~~~~~~~~~--------~-~v~~~-~g--~~~~~d~lviAtG~~--~~~p----  116 (369)
                      ....   +++          ..++ ...+|+.+..        + .|.+. +|  ++..||+|++|||..  |.+|    
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~  159 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF  159 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence            1100   010          1111 1233333321        1 34443 33  345799999999975  5555    


Q ss_pred             -CChH---HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc-cccC--------------
Q 046865          117 -KTRT---ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-LEFI--------------  177 (369)
Q Consensus       117 -~~~~---~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~-l~~~--------------  177 (369)
                       +++.   ..+++...........|+|+|||+|.+|+++|.+++.  ...+|++..|+... +|..              
T Consensus       160 ~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~--~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R  237 (531)
T PF00743_consen  160 PGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSR--VAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTR  237 (531)
T ss_dssp             CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTT--TSCCEEEECC-----------------------
T ss_pred             hhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHH--hcCCeEEEEeccccccccccccccccccccccc
Confidence             3211   1111111112334678999999999999999999985  37788888886432 1111              


Q ss_pred             ---------CcchHHHHH-HHHHh------CCc--------------------------EEEeCceeeeccCCCCCeEEE
Q 046865          178 ---------GPKAGDKTL-DWLIS------KKV--------------------------DVKLGQRVNLDSVSEGSDTYL  215 (369)
Q Consensus       178 ---------~~~~~~~~~-~~l~~------~gv--------------------------~i~~~~~v~~i~~~~~~~~v~  215 (369)
                               +..+.+.+. +.+.+      .|.                          ++.  ..|.++.    +..+.
T Consensus       238 ~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~----~~~v~  311 (531)
T PF00743_consen  238 FSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFT----ENSVI  311 (531)
T ss_dssp             -------------------------------------------------------------E--E-EEEE-----SSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc----ccccc
Confidence                     011111110 11100      011                          111  1111221    12467


Q ss_pred             cCCCcEE-eccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeec--cCCCeEEecccCCccccchhHHHHHHHH
Q 046865          216 TSTGDTI-KADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVK--GQKNIFAIGDITDIREIKQGFLAQKHAQ  292 (369)
Q Consensus       216 ~~~g~~i-~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~--~~~~i~a~GD~~~~~~~~~~~~A~~~g~  292 (369)
                      +.||+++ ++|.||+|||++.+.+||+...+.  . .++.+..-.++-..  .+|++..+|=+.....  ....+..||+
T Consensus       312 F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~--~-~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~--~fp~~ElQAr  386 (531)
T PF00743_consen  312 FEDGSTEEDVDVIIFCTGYKFSFPFLDESLIK--V-DDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGS--IFPIFELQAR  386 (531)
T ss_dssp             ETTSEEEEE-SEEEE---EE---TTB-TTTT---S--SSSSSEETTTEETETTSTTEEESS-SBSSS---HHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccc--c-cccccccccccccccccccccccccccccccc--cccccccccc
Confidence            8899765 699999999999999999876542  2 22333333443322  3589999997642211  2346788888


Q ss_pred             HHHHHHH
Q 046865          293 VAAKNLK  299 (369)
Q Consensus       293 ~~a~~i~  299 (369)
                      .+|+-+.
T Consensus       387 w~a~v~s  393 (531)
T PF00743_consen  387 WAARVFS  393 (531)
T ss_dssp             HHHHHHT
T ss_pred             ccccccc
Confidence            8887765

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.80  E-value=1.2e-19  Score=150.83  Aligned_cols=253  Identities=22%  Similarity=0.329  Sum_probs=155.1

Q ss_pred             eEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccc--cccccccccCCccc--ccceeccccccccceEEEeeeeee
Q 046865           15 RVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEI--TWASLRAMVEPSFG--ERSVINHTDYLVNGRIVASPAINI   87 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   87 (369)
                      +.+|||||.||.+||..|+   +..+|+||..++..--  .+..+..+.. .++  +......-.-+  -+|+.. +..+
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~yle-kfdv~eq~~~elg~~f--~~~~~~-v~~~   76 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLE-KFDVKEQNCHELGPDF--RRFLND-VVTW   76 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHH-hcCccccchhhhcccH--HHHHHh-hhhh
Confidence            3689999999999998775   5789999998764320  0111111110 010  00000000000  022333 3333


Q ss_pred             e--cceEEecCCeEEeccEEEEccCCCCCCC--CCh-----HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhh
Q 046865           88 T--ENEVLTAEGRRVVYDYLVIATGHKDPVP--KTR-----TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD  158 (369)
Q Consensus        88 ~--~~~v~~~~g~~~~~d~lviAtG~~~~~p--~~~-----~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~  158 (369)
                      +  .+.+.+.+|.++.|++|+++||.+|..-  ++.     .+.-.+.......+...|.|.|+|.|-+++|++.++.  
T Consensus        77 ~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--  154 (334)
T KOG2755|consen   77 DSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--  154 (334)
T ss_pred             ccccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--
Confidence            3  3468888999999999999999998532  110     0111222333445678899999999999999999986  


Q ss_pred             CCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhC------------CcEEEeCceeee---------------------
Q 046865          159 FPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISK------------KVDVKLGQRVNL---------------------  204 (369)
Q Consensus       159 ~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~------------gv~i~~~~~v~~---------------------  204 (369)
                        ..+|+|....+.+.. .++|.+.+.+...++..            .++.+.++.-..                     
T Consensus       155 --~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~es  232 (334)
T KOG2755|consen  155 --ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISES  232 (334)
T ss_pred             --cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhh
Confidence              789999988877765 56666666665555110            111111110000                     


Q ss_pred             --------------ccCCCCCeEEEc---CCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeecc
Q 046865          205 --------------DSVSEGSDTYLT---STG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKG  265 (369)
Q Consensus       205 --------------i~~~~~~~~v~~---~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~  265 (369)
                                    +....+...+..   ..+  ..+.+|++++|+|..||+++.-...+  +..++|.+.||+.|+| +
T Consensus       233 eer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t-s  309 (334)
T KOG2755|consen  233 ENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET-S  309 (334)
T ss_pred             hhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-c
Confidence                          000000001111   111  26789999999999999996655444  5678899999999998 7


Q ss_pred             CCCeEEecccCCc
Q 046865          266 QKNIFAIGDITDI  278 (369)
Q Consensus       266 ~~~i~a~GD~~~~  278 (369)
                      .|++||+||++..
T Consensus       310 lpdvFa~gDvctt  322 (334)
T KOG2755|consen  310 LPDVFAAGDVCTT  322 (334)
T ss_pred             ccceeeecceecc
Confidence            9999999999874

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.80  E-value=5.6e-21  Score=162.40  Aligned_cols=170  Identities=29%  Similarity=0.424  Sum_probs=106.5

Q ss_pred             eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcc-c-cccee-----ccccc--cccceE-EEee
Q 046865           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF-G-ERSVI-----NHTDY--LVNGRI-VASP   83 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~~--~~~~~~-~~~~   83 (369)
                      ||||||||+||++||.+|+ .+.+|+|||+.+...+....+........ . .....     .+.+.  ..++++ +...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            7999999999999999997 59999999998754432211111100000 0 00000     11111  124555 4455


Q ss_pred             eeeeecc--eE----------EecCCeEEeccEEEEccCCCCCCCCChH-------HHHHHHHHHHHHHhcCCeEEEEcC
Q 046865           84 AINITEN--EV----------LTAEGRRVVYDYLVIATGHKDPVPKTRT-------ERLNQYQAENQKIKSARSILIVGG  144 (369)
Q Consensus        84 ~~~~~~~--~v----------~~~~g~~~~~d~lviAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~vvG~  144 (369)
                      +..++..  .+          ...++.++.||+||+|||+.|..|.++.       ..+.+..........+++++|+| 
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG-  159 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG-  159 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc-
Confidence            5555532  21          2335578999999999999865443332       22334445555555566888888 


Q ss_pred             ChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEec
Q 046865          145 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKA  224 (369)
Q Consensus       145 G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~  224 (369)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (201)
T PF07992_consen  160 --------------------------------------------------------------------------------  159 (201)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc
Q 046865          225 DCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR  279 (369)
Q Consensus       225 d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~  279 (369)
                                  +++|. ...+++++++|++.||+++|+ +.|||||+|||++.+
T Consensus       160 ------------~~~l~-~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 ------------TEFLA-EKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY  200 (201)
T ss_dssp             ------------TTTST-HHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred             ------------ccccc-ccccccccccccccccccccc-ccccccccccccccC
Confidence                        44453 233457789999999999999 699999999999653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.78  E-value=5.5e-17  Score=144.06  Aligned_cols=291  Identities=19%  Similarity=0.223  Sum_probs=183.0

Q ss_pred             CCCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCCccccccccc--------------cccCCcccccc-------
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLR--------------AMVEPSFGERS-------   66 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~~~~~~~~~~--------------~~~~~~~~~~~-------   66 (369)
                      +...+|++.||-||+-|+.|..|..  +.++..+||.+.|.+.+..+-              ...+|......       
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h   81 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH   81 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence            4567999999999999999999974  689999999998765433221              11122111100       


Q ss_pred             ------------------eeccccc----cccceEEEeeee---eeecc-----eEEecCCeEEeccEEEEccCCCCCCC
Q 046865           67 ------------------VINHTDY----LVNGRIVASPAI---NITEN-----EVLTAEGRRVVYDYLVIATGHKDPVP  116 (369)
Q Consensus        67 ------------------~~~~~~~----~~~~~~~~~~~~---~~~~~-----~v~~~~g~~~~~d~lviAtG~~~~~p  116 (369)
                                        +..+-.|    +..++| ..++.   .++..     .+.+.++..++++.||+++|.+|.+|
T Consensus        82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rf-g~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP  160 (436)
T COG3486          82 GRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRF-GEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP  160 (436)
T ss_pred             chHhhhhhhhcccccHHHHHHHHHHHHhhCCcccc-CCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence                              0000011    111222 22333   22221     25666777999999999999999999


Q ss_pred             CCh----HHH-H--HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCC--eEEEEEcCcccccc---------CC
Q 046865          117 KTR----TER-L--NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEF---------IG  178 (369)
Q Consensus       117 ~~~----~~~-~--~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~--~v~lv~~~~~~l~~---------~~  178 (369)
                      +.-    ... +  .++..........++|.|||+|.+|.|+-..|....+..  ++.|+.|+..++|.         |.
T Consensus       161 ~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~  240 (436)
T COG3486         161 PCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFS  240 (436)
T ss_pred             hHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcC
Confidence            631    111 1  223333444555667999999999999999887655444  58999999877653         22


Q ss_pred             cchHHHH-----------------------------------HHHHH--hCCcEEEeCceeeeccCCCCC-eEEEcC---
Q 046865          179 PKAGDKT-----------------------------------LDWLI--SKKVDVKLGQRVNLDSVSEGS-DTYLTS---  217 (369)
Q Consensus       179 ~~~~~~~-----------------------------------~~~l~--~~gv~i~~~~~v~~i~~~~~~-~~v~~~---  217 (369)
                      |+..+.+                                   ++.+.  +..|.++.++.+..++..+++ +.+.+.   
T Consensus       241 P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~  320 (436)
T COG3486         241 PEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHE  320 (436)
T ss_pred             chhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeecc
Confidence            3322221                                   11111  246889999999998877654 555442   


Q ss_pred             CC--cEEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeCCceeeccCC----CeEEecccCCcc---ccchhHHH
Q 046865          218 TG--DTIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVDENLRVKGQK----NIFAIGDITDIR---EIKQGFLA  287 (369)
Q Consensus       218 ~g--~~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~----~i~a~GD~~~~~---~~~~~~~A  287 (369)
                      +|  +++++|.||+|||++... .|+....-.+..+++|.+.|+++++....+    .||+.|-+....   .+.++..|
T Consensus       321 ~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a  400 (436)
T COG3486         321 TGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLGA  400 (436)
T ss_pred             CCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccccCCccchHHH
Confidence            22  478999999999998544 466654433467889999999998774322    699998775432   22344445


Q ss_pred             HHHHHHHHHHHHHHhhCCC
Q 046865          288 QKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       288 ~~~g~~~a~~i~~~~~g~~  306 (369)
                      .+.+     .|++.+.|..
T Consensus       401 ~Raa-----~I~~~L~g~~  414 (436)
T COG3486         401 WRAA-----VILNSLLGRE  414 (436)
T ss_pred             HHHH-----HHHHHHhCcC
Confidence            4443     3444444654

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.77  E-value=3.9e-18  Score=159.33  Aligned_cols=281  Identities=22%  Similarity=0.168  Sum_probs=171.5

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccc--cceeccccccc--cceEEEeee
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGE--RSVINHTDYLV--NGRIVASPA   84 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~   84 (369)
                      ....++|.|||||||||+||..|. .|++|+++|+.+..+..   +. +-.|.+..  .......+++.  +++|..+..
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl---l~-yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~  195 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL---LL-YGIPDFKLPKDILDRRLELLERSGVEFKLNVR  195 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee---EE-ecCchhhccchHHHHHHHHHHHcCeEEEEcce
Confidence            334589999999999999999997 59999999998876632   11 11222211  11111112221  455554433


Q ss_pred             eeeecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHHHHH---HHHHH----HH------H--hcCCeEEEEcCC
Q 046865           85 INITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQ---YQAEN----QK------I--KSARSILIVGGG  145 (369)
Q Consensus        85 ~~~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~~~~---~~~~~----~~------~--~~~~~v~vvG~G  145 (369)
                      +..+   +..+. ..-.||.++++||+. |.   +|+.+...+..   +....    ..      .  ...++++|||+|
T Consensus       196 vG~~---it~~~-L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG  271 (457)
T COG0493         196 VGRD---ITLEE-LLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGG  271 (457)
T ss_pred             ECCc---CCHHH-HHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCC
Confidence            3222   11111 123569999999987 33   45443222111   11110    00      0  112899999999


Q ss_pred             hhHHHHHHHHhhhCCCC-eEEEEEcCccc--cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeE-E---E--
Q 046865          146 PTGVELAGEIAVDFPEK-KVTLVHKGSRL--LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDT-Y---L--  215 (369)
Q Consensus       146 ~~g~e~a~~l~~~~~~~-~v~lv~~~~~~--l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~-v---~--  215 (369)
                      .++++++....  +.|. +|+.+.+...-  ....+........+....+|+.........++..++ +.+. +   .  
T Consensus       272 ~Ta~D~~~t~~--r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~  349 (457)
T COG0493         272 DTAMDCAGTAL--RLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVE  349 (457)
T ss_pred             CCHHHHHHHHh--hcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeeccccc
Confidence            99999997655  3454 78877532221  112223345555667777888877776665555422 2211 1   1  


Q ss_pred             cC--------------CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCce-eeccCCCeEEecccCCc
Q 046865          216 TS--------------TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENL-RVKGQKNIFAIGDITDI  278 (369)
Q Consensus       216 ~~--------------~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l-~~~~~~~i~a~GD~~~~  278 (369)
                      ..              .|  .++++|.|+.+.|..++..........+..+..|.+.+++.+ +| +.|++||.||+...
T Consensus       350 ~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g  428 (457)
T COG0493         350 PGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRG  428 (457)
T ss_pred             ccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeeeCceeccc
Confidence            10              12  267899999999998775442222213467888999999998 66 79999999999975


Q ss_pred             cccchhHHHHHHHHHHHHHHH-HHhh
Q 046865          279 REIKQGFLAQKHAQVAAKNLK-VLMV  303 (369)
Q Consensus       279 ~~~~~~~~A~~~g~~~a~~i~-~~~~  303 (369)
                      .  .+...|+.+|+.+|+-|. .++.
T Consensus       429 ~--~~vv~ai~eGr~aak~i~~~~l~  452 (457)
T COG0493         429 A--ALVVWAIAEGREAAKAIDKELLL  452 (457)
T ss_pred             h--hhhhhHHhhchHHHHhhhHHHHh
Confidence            3  357899999999999998 4443

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.73  E-value=3.1e-17  Score=149.23  Aligned_cols=222  Identities=19%  Similarity=0.253  Sum_probs=118.4

Q ss_pred             cceEEEECCChHHHHHHHHccc--CCcEEEEcCCCCcccccccccc--------------ccCCcccc------------
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLRA--------------MVEPSFGE------------   64 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~~~~~~~~~~~--------------~~~~~~~~------------   64 (369)
                      .+|+|+||.||++|+.|..|..  ..++..+|+++.+.+....+..              ..+|....            
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl   81 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL   81 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence            5899999999999999999863  6999999999877544322111              11111110            


Q ss_pred             -------------cceeccccc----cccceEEEeeeeeeecc--------eEEec----CCeEEeccEEEEccCCCCCC
Q 046865           65 -------------RSVINHTDY----LVNGRIVASPAINITEN--------EVLTA----EGRRVVYDYLVIATGHKDPV  115 (369)
Q Consensus        65 -------------~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~v~~~----~g~~~~~d~lviAtG~~~~~  115 (369)
                                   ..+..+-.|    +...-.+..+|..+...        .|.+.    ++..+.+++||+|||..|.+
T Consensus        82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i  161 (341)
T PF13434_consen   82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI  161 (341)
T ss_dssp             HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred             hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence                         000011111    12212234455555421        44442    34689999999999999999


Q ss_pred             CCChH-----HHH---HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------CC
Q 046865          116 PKTRT-----ERL---NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IG  178 (369)
Q Consensus       116 p~~~~-----~~~---~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------~~  178 (369)
                      |....     ..+   .++....+.....++|+|||||.+|.|++..|.++.+..+|+++.|++.+.+.         +.
T Consensus       162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~  241 (341)
T PF13434_consen  162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS  241 (341)
T ss_dssp             -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred             CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence            87421     111   12222222356789999999999999999999987666899999999766442         12


Q ss_pred             cch-------------------------------HHHHHH-----HH-HhCCcEEEeCceeeeccCCC-CCeEEEcCC--
Q 046865          179 PKA-------------------------------GDKTLD-----WL-ISKKVDVKLGQRVNLDSVSE-GSDTYLTST--  218 (369)
Q Consensus       179 ~~~-------------------------------~~~~~~-----~l-~~~gv~i~~~~~v~~i~~~~-~~~~v~~~~--  218 (369)
                      |+.                               .+.+.+     .+ .+..++++.++.|+.++..+ +.+.+.+.+  
T Consensus       242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~  321 (341)
T PF13434_consen  242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ  321 (341)
T ss_dssp             HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT
T ss_pred             chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC
Confidence            221                               111111     11 23457899999999998766 477776654  


Q ss_pred             -C--cEEeccEEEEcCCCC
Q 046865          219 -G--DTIKADCHFLCTGKP  234 (369)
Q Consensus       219 -g--~~i~~d~vi~a~G~~  234 (369)
                       +  .++++|.||+|||++
T Consensus       322 ~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  322 TGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             T--EEEEEESEEEE---EE
T ss_pred             CCCeEEEecCEEEEcCCcc
Confidence             2  478999999999985

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.69  E-value=3.7e-15  Score=134.52  Aligned_cols=199  Identities=20%  Similarity=0.173  Sum_probs=126.0

Q ss_pred             EEeccEEEEccCCCCCCCCCh-------HHHH---HHHHHHHH-------------HHhcCCeEEE---EcCCh------
Q 046865           99 RVVYDYLVIATGHKDPVPKTR-------TERL---NQYQAENQ-------------KIKSARSILI---VGGGP------  146 (369)
Q Consensus        99 ~~~~d~lviAtG~~~~~p~~~-------~~~~---~~~~~~~~-------------~~~~~~~v~v---vG~G~------  146 (369)
                      ++....+|+|||..+.-+.-.       ...+   .+++++..             .-..+++++.   +|+-.      
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~  377 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP  377 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence            577889999999985433211       0111   22333321             1134788776   45432      


Q ss_pred             --------hHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC
Q 046865          147 --------TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST  218 (369)
Q Consensus       147 --------~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  218 (369)
                              ..+.-|+.+++++|..+|+++.-.-|...   ...-+.+.+.-++.||+++.+....-.+..++.+.|..+|
T Consensus       378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG---~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~Ed  454 (622)
T COG1148         378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFG---KDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVED  454 (622)
T ss_pred             hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccC---ccHHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEe
Confidence                    35566777788899999999987655433   2333444444447899999885443333334444554433


Q ss_pred             ---C--cEEeccEEEEcCCCCCCchhhcc-cccCCCCCCCCcEEeC-Cceee--ccCCCeEEecccCCccccchhHHHHH
Q 046865          219 ---G--DTIKADCHFLCTGKPVGSDWLKD-TILKDSLDTDGMLMVD-ENLRV--KGQKNIFAIGDITDIREIKQGFLAQK  289 (369)
Q Consensus       219 ---g--~~i~~d~vi~a~G~~p~~~~l~~-~~~~~~~~~~g~i~vd-~~l~~--~~~~~i~a~GD~~~~~~~~~~~~A~~  289 (369)
                         |  .++++|+|++++|..|....-.. ..++++.+++||+... +.++.  ++.++||.+|-+.+.   +....++.
T Consensus       455 Tl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP---kdI~~sia  531 (622)
T COG1148         455 TLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP---KDIADSIA  531 (622)
T ss_pred             ccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC---ccHHHHHH
Confidence               3  37899999999999985432111 2355678899999875 55543  247899999988754   45677888


Q ss_pred             HHHHHHHHHHHHhh
Q 046865          290 HAQVAAKNLKVLMV  303 (369)
Q Consensus       290 ~g~~~a~~i~~~~~  303 (369)
                      ||..||......+.
T Consensus       532 qa~aAA~kA~~~l~  545 (622)
T COG1148         532 QAKAAAAKAAQLLG  545 (622)
T ss_pred             HhHHHHHHHHHHhh
Confidence            88888777766653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.64  E-value=2.1e-14  Score=133.73  Aligned_cols=160  Identities=14%  Similarity=0.024  Sum_probs=113.2

Q ss_pred             EEEcCChhHHHHH-HHHhh--hCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE-E
Q 046865          140 LIVGGGPTGVELA-GEIAV--DFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY-L  215 (369)
Q Consensus       140 ~vvG~G~~g~e~a-~~l~~--~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v-~  215 (369)
                      .|++.+.+|+|.+ ..+.+  ...|.+|+++...+..++..  ++.+.+.+.+++.|++++++++|.+++.+++.+.. .
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~  296 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVW  296 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence            6788999999998 55532  24699999999998888765  78899999999999999999999998765554433 3


Q ss_pred             cCCCc--EEeccEEEEcCCCCCCchhh------ccc--ccCCCCC-----------------CCCcEEeCCceee-----
Q 046865          216 TSTGD--TIKADCHFLCTGKPVGSDWL------KDT--ILKDSLD-----------------TDGMLMVDENLRV-----  263 (369)
Q Consensus       216 ~~~g~--~i~~d~vi~a~G~~p~~~~l------~~~--~~~~~~~-----------------~~g~i~vd~~l~~-----  263 (369)
                      ..+|+  .+++|.+|+|+|+.++..+.      .+.  ++++...                 ..=.|.+|+.||.     
T Consensus       297 ~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g  376 (422)
T PRK05329        297 TRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQG  376 (422)
T ss_pred             eeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCC
Confidence            34443  58999999999987554321      110  1111000                 0112667777665     


Q ss_pred             -ccCCCeEEecccCCccccc---h-hHHHHHHHHHHHHHHHHH
Q 046865          264 -KGQKNIFAIGDITDIREIK---Q-GFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       264 -~~~~~i~a~GD~~~~~~~~---~-~~~A~~~g~~~a~~i~~~  301 (369)
                       +..+|+||+|++.+.+.+.   . .-.|+..|..|+++|...
T Consensus       377 ~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~  419 (422)
T PRK05329        377 GPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE  419 (422)
T ss_pred             CeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence             2479999999999876541   1 137888899999998743

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.63  E-value=7.5e-15  Score=138.52  Aligned_cols=163  Identities=22%  Similarity=0.340  Sum_probs=101.8

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCc-EEEEcCCCCccccccccc--ccc--CC----ccc---c---cce-----
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASLR--AMV--EP----SFG---E---RSV-----   67 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~-V~lie~~~~~~~~~~~~~--~~~--~~----~~~---~---~~~-----   67 (369)
                      +...++||+|||||++||++|++|+ .|.. ++++||++..|..|-..+  ...  .+    .++   .   ..+     
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~   83 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE   83 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence            4456799999999999999999997 4777 999999987775532211  000  00    000   0   000     


Q ss_pred             -----eccccccc---cceEEEe-eeeeeecc----eEEecCCeE--EeccEEEEccCCC--CCCCCChH------HHHH
Q 046865           68 -----INHTDYLV---NGRIVAS-PAINITEN----EVLTAEGRR--VVYDYLVIATGHK--DPVPKTRT------ERLN  124 (369)
Q Consensus        68 -----~~~~~~~~---~~~~~~~-~~~~~~~~----~v~~~~g~~--~~~d~lviAtG~~--~~~p~~~~------~~~~  124 (369)
                           ..+.+.+.   .+++... ++...+.+    +|.++++..  +.+|+||+|||..  |.+|.++.      ..++
T Consensus        84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H  163 (443)
T COG2072          84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH  163 (443)
T ss_pred             HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence                 01111111   1222111 12233322    567766654  5699999999975  66666432      2223


Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      +..........+|+|+|||+|.+|++++.+|.+.  +.+|+++.|++..
T Consensus       164 S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~--ga~vt~~qRs~~~  210 (443)
T COG2072         164 SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEV--GASVTLSQRSPPH  210 (443)
T ss_pred             hhcCCCccccCCCeEEEECCCccHHHHHHHHHhc--CCeeEEEecCCCc
Confidence            3222223446789999999999999999999864  6999999998643

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.63  E-value=1e-15  Score=149.14  Aligned_cols=281  Identities=20%  Similarity=0.178  Sum_probs=153.2

Q ss_pred             CCCcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCccccccccccccCCccccc--ceecccccc--ccceEEEeee
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGER--SVINHTDYL--VNGRIVASPA   84 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~   84 (369)
                      ...-++|.|||+|||||+||-.|.+ |+.|+++||.+..|..   + .+--|....+  ...+..+++  .+++|+...-
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl---l-~ygipnmkldk~vv~rrv~ll~~egi~f~tn~e 1857 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL---L-MYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTE 1857 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce---e-eecCCccchhHHHHHHHHHHHHhhCceEEeecc
Confidence            3456899999999999999999965 9999999999987632   1 1111222111  111122222  2566654332


Q ss_pred             eeeecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHHH-------HHHH-HHHH-------HHhcCCeEEEEcCC
Q 046865           85 INITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERL-------NQYQ-AENQ-------KIKSARSILIVGGG  145 (369)
Q Consensus        85 ~~~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~~-------~~~~-~~~~-------~~~~~~~v~vvG~G  145 (369)
                      +  .. .+.+ |+-.-.+|.+|+|+|+. |+   +|+-+...+       +... .+.+       .....++|+|+|||
T Consensus      1858 i--gk-~vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkviviggg 1933 (2142)
T KOG0399|consen 1858 I--GK-HVSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGG 1933 (2142)
T ss_pred             c--cc-cccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCC
Confidence            2  11 2322 33345689999999998 43   444332221       1111 0111       11346899999999


Q ss_pred             hhHHHHHHHHhhhCCCC-eEEEEEcCccc---------cccCCc----ch-HHHHHHHHHhC--CcEEEe----------
Q 046865          146 PTGVELAGEIAVDFPEK-KVTLVHKGSRL---------LEFIGP----KA-GDKTLDWLISK--KVDVKL----------  198 (369)
Q Consensus       146 ~~g~e~a~~l~~~~~~~-~v~lv~~~~~~---------l~~~~~----~~-~~~~~~~l~~~--gv~i~~----------  198 (369)
                      .+|-++...-.  +.|+ .|.-++--|..         .|.++.    +. .+..++..-+-  --.+.+          
T Consensus      1934 dtg~dcigtsv--rhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~ 2011 (2142)
T KOG0399|consen 1934 DTGTDCIGTSV--RHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGN 2011 (2142)
T ss_pred             Cccccccccch--hhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCc
Confidence            99988765433  2243 33333221111         111111    00 11222221110  011111          


Q ss_pred             --Cceeeecc--CCCCC-eEEE-c-CCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEe-CCceeeccCCCeE
Q 046865          199 --GQRVNLDS--VSEGS-DTYL-T-STGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMV-DENLRVKGQKNIF  270 (369)
Q Consensus       199 --~~~v~~i~--~~~~~-~~v~-~-~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~v-d~~l~~~~~~~i~  270 (369)
                        +-+..+++  .++.+ .... . .+.+.++||++|+|.|+.- ++....+.+.++.|+++.|.. ++.+.+ +.+.||
T Consensus      2012 v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~g-pe~~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vf 2089 (2142)
T KOG0399|consen 2012 VTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVG-PEKSVIEQLNLKTDPRSNILTPKDSYST-DVAKVF 2089 (2142)
T ss_pred             eeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccC-cchhhhhhcCcccCccccccCCCccccc-ccccee
Confidence              11111222  12222 1111 1 1224789999999999863 222223345557788877765 345666 699999


Q ss_pred             EecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          271 AIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       271 a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      |+|||-....  +..+|+++||.+|+.+-....+
T Consensus      2090 aagdcrrgqs--lvvwai~egrq~a~~vd~~~~~ 2121 (2142)
T KOG0399|consen 2090 AAGDCRRGQS--LVVWAIQEGRQAARQVDELMGG 2121 (2142)
T ss_pred             ecccccCCce--EEEEEehhhhHHHHHHHHHhCC
Confidence            9999986543  5678999999999998754433

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.60  E-value=8.5e-16  Score=130.72  Aligned_cols=154  Identities=27%  Similarity=0.405  Sum_probs=83.6

Q ss_pred             EEECCChHHHHHHHHcc-cCCc-EEEEcCCCCcccccccccc---ccCCccc-------c---------------cceec
Q 046865           17 VVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASLRA---MVEPSFG-------E---------------RSVIN   69 (369)
Q Consensus        17 vIIGgG~aGl~aA~~l~-~g~~-V~lie~~~~~~~~~~~~~~---~~~~~~~-------~---------------~~~~~   69 (369)
                      +|||||++||++|..|. .|.+ ++|+|+++.+|..|.....   ...+...       .               .....
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            79999999999999986 5888 9999999888766543211   1111100       0               00000


Q ss_pred             c---ccccc------cceEE-Eeeeeeeecc----eEEecCCeEEeccEEEEccCC--CCCCCCChH-H---HHHHHHHH
Q 046865           70 H---TDYLV------NGRIV-ASPAINITEN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT-E---RLNQYQAE  129 (369)
Q Consensus        70 ~---~~~~~------~~~~~-~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~--~~~~p~~~~-~---~~~~~~~~  129 (369)
                      .   .+++.      +.++. ..++..+...    .|.+.+++++.+|+||+|||.  .|..|.++. .   .++.....
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~  160 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR  160 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence            0   00000      22332 2345555432    677878888999999999996  566665544 1   11111111


Q ss_pred             HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      .......++|+|||+|.+|++++..|.+.  +.+|+++.|++.
T Consensus       161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~~~--g~~V~~~~R~~~  201 (203)
T PF13738_consen  161 DPEDFKGKRVVVVGGGNSAVDIAYALAKA--GKSVTLVTRSPI  201 (203)
T ss_dssp             TTGGCTTSEEEEE--SHHHHHHHHHHTTT--CSEEEEEESS--
T ss_pred             ChhhcCCCcEEEEcChHHHHHHHHHHHhh--CCEEEEEecCCC
Confidence            11234569999999999999999999854  799999999873

...

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.56  E-value=3.2e-14  Score=132.50  Aligned_cols=217  Identities=19%  Similarity=0.281  Sum_probs=126.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc--------c--ccc----------CCccc--cc--
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL--------R--AMV----------EPSFG--ER--   65 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~--------~--~~~----------~~~~~--~~--   65 (369)
                      ...++|+|||||+|||++|+.|. .|++++++||.+.+|..|.-.        .  ..+          -++++  .+  
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~   83 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP   83 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence            34789999999999999999986 599999999999988766432        1  000          01111  00  


Q ss_pred             -------ceecccc-cccc------ceEEEeeeeee---e-cc-eEEecCC----eEEeccEEEEccCCC--CCCCCChH
Q 046865           66 -------SVINHTD-YLVN------GRIVASPAINI---T-EN-EVLTAEG----RRVVYDYLVIATGHK--DPVPKTRT  120 (369)
Q Consensus        66 -------~~~~~~~-~~~~------~~~~~~~~~~~---~-~~-~v~~~~g----~~~~~d~lviAtG~~--~~~p~~~~  120 (369)
                             .+..+.+ +.+.      ++| ...+..+   + .+ .|...++    +..-||.|++|||..  |.+|.++.
T Consensus        84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g  162 (448)
T KOG1399|consen   84 RYFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG  162 (448)
T ss_pred             ccCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence                   1111111 1111      222 2222233   3 12 3444333    467899999999988  67776533


Q ss_pred             --------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC
Q 046865          121 --------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK  192 (369)
Q Consensus       121 --------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~  192 (369)
                              ..+++...........++|+|||+|.+|+|++.+++..  ..+|++..+ .   +    .........+ -.
T Consensus       163 ~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~--ak~v~~~~~-~---~----~~~~~~~~~~-~~  231 (448)
T KOG1399|consen  163 PGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRV--AKEVHLSVV-S---P----KVHVEPPEIL-GE  231 (448)
T ss_pred             CchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHh--ccCcceeee-c---c----ccccccccee-ec
Confidence                    12333333333445679999999999999999998743  566776654 1   0    0000011111 11


Q ss_pred             CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccc
Q 046865          193 KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTI  244 (369)
Q Consensus       193 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~  244 (369)
                      ++..+..  |.....+  + .+.+.++....+|.+|+|||+.-..+++....
T Consensus       232 ~~~~~~~--i~~~~e~--~-~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~  278 (448)
T KOG1399|consen  232 NLWQVPS--IKSFTED--G-SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG  278 (448)
T ss_pred             ceEEccc--cccccCc--c-eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence            2222221  3333211  1 23445667889999999999998777766543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.54  E-value=5.2e-14  Score=100.48  Aligned_cols=80  Identities=28%  Similarity=0.412  Sum_probs=73.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS  217 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~  217 (369)
                      +++|+|||++|+|+|..|.+  .+.+|+++++.+.+++.+++++.+.+++.++++||++++++.+.+++.+++.+.|+++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~   78 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE   78 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence            58999999999999999985  4899999999999999999999999999999999999999999999877666667777


Q ss_pred             CC
Q 046865          218 TG  219 (369)
Q Consensus       218 ~g  219 (369)
                      ||
T Consensus        79 ~g   80 (80)
T PF00070_consen   79 DG   80 (80)
T ss_dssp             TS
T ss_pred             cC
Confidence            76

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.47  E-value=2.7e-12  Score=113.05  Aligned_cols=279  Identities=18%  Similarity=0.145  Sum_probs=151.0

Q ss_pred             CCcceEEEECCChHHHHHHHHc-c--cCCcEEEEcCCCCccccccccccccCCcccccce-e-cccccc--ccceEEEee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSL-Q--FSADVTLIDPKEYFEITWASLRAMVEPSFGERSV-I-NHTDYL--VNGRIVASP   83 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l-~--~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~~~~~~~   83 (369)
                      ...++|+|||+||||+.+|..| +  .+.+|.|+|+.+...   +..+..+.|+.++... + .+...+  ..+.|+...
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF---GLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv   94 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF---GLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNV   94 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc---ceeeeccCCCCcchhhHHHHHHHHhhccceEEEecc
Confidence            3456999999999999999886 4  268999999987533   4444445554443210 0 011111  122332221


Q ss_pred             eeeeecceEEecCCeEEeccEEEEccCCC----CCCCCChHHHHHHHHHHH------------HHHhcCCeEEEEcCChh
Q 046865           84 AINITENEVLTAEGRRVVYDYLVIATGHK----DPVPKTRTERLNQYQAEN------------QKIKSARSILIVGGGPT  147 (369)
Q Consensus        84 ~~~~~~~~v~~~~g~~~~~d~lviAtG~~----~~~p~~~~~~~~~~~~~~------------~~~~~~~~v~vvG~G~~  147 (369)
                      -+.-   .+.+. .-+-.||.+|||+|+.    -.+|+.+...+.+.....            +......+++|||.|.+
T Consensus        95 ~vG~---dvsl~-eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNV  170 (468)
T KOG1800|consen   95 KVGR---DVSLK-ELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNV  170 (468)
T ss_pred             eecc---cccHH-HHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCch
Confidence            1110   12221 1235799999999998    347765433322221111            11122688999999999


Q ss_pred             HHHHHHHHhhh--------------------CCCCeEEEEEcCccc--------------cc-------c-------C--
Q 046865          148 GVELAGEIAVD--------------------FPEKKVTLVHKGSRL--------------LE-------F-------I--  177 (369)
Q Consensus       148 g~e~a~~l~~~--------------------~~~~~v~lv~~~~~~--------------l~-------~-------~--  177 (369)
                      ++++|..|...                    ..-++|+++.|...+              ++       .       +  
T Consensus       171 AlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~  250 (468)
T KOG1800|consen  171 ALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDE  250 (468)
T ss_pred             hhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCc
Confidence            99999887631                    012468888876322              11       0       0  


Q ss_pred             --------CcchHHHHHHHHHhCC---------cE----EEeCceeeeccCC-CC--CeE-----------EEcCCCcEE
Q 046865          178 --------GPKAGDKTLDWLISKK---------VD----VKLGQRVNLDSVS-EG--SDT-----------YLTSTGDTI  222 (369)
Q Consensus       178 --------~~~~~~~~~~~l~~~g---------v~----i~~~~~v~~i~~~-~~--~~~-----------v~~~~g~~i  222 (369)
                              -+++.+.+.+.++++.         .+    .+..+. ..|..+ ++  .+.           +.+.+-+++
T Consensus       251 ~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P-~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~  329 (468)
T KOG1800|consen  251 SETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTP-GAILPGADGVSGVRFQVTILEGTQAVPTGAFETL  329 (468)
T ss_pred             ccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCH-HHhccCcccccceEEEeeeehhhcccccCceEee
Confidence                    0133344444443311         11    000111 111111 11  111           111122479


Q ss_pred             eccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeec---cCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          223 KADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVK---GQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       223 ~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~---~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      +|++++.+.|++...  +.. ++  ..|.+..+.-|...+..   -.|++|+.|-|...|.- -....+++|..+|..|.
T Consensus       330 p~~l~i~sIGYks~p--v~~-gi--pFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~G-vIattm~dAf~v~d~I~  403 (468)
T KOG1800|consen  330 PCGLLIRSIGYKSVP--VDS-GI--PFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTG-VIATTMQDAFEVADTIV  403 (468)
T ss_pred             ccceeEeeeeecccc--cCC-CC--CcccccCcccCCCceEEeeccCCceEEEeeeccCCcc-eeeehhhhHHHHHHHHH
Confidence            999999999997432  111 22  34444444444444431   25999999999976542 12356788999999998


Q ss_pred             HHhh
Q 046865          300 VLMV  303 (369)
Q Consensus       300 ~~~~  303 (369)
                      +.+.
T Consensus       404 qD~~  407 (468)
T KOG1800|consen  404 QDLK  407 (468)
T ss_pred             HHHH
Confidence            7765

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.46  E-value=2.2e-12  Score=120.34  Aligned_cols=138  Identities=17%  Similarity=0.264  Sum_probs=77.9

Q ss_pred             CcceEEEECCChHHHHHHHHc-c-cCCcEEEEcCCCCccccccccccccCCcccc-cce-ecccccc--ccceEEEeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSL-Q-FSADVTLIDPKEYFEITWASLRAMVEPSFGE-RSV-INHTDYL--VNGRIVASPAI   85 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l-~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~~~   85 (369)
                      ..++|+||||||||++||.+| + .|++|+|+|+.+..+   +.++..+.+.... +.. ..+...+  .+++|...  +
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg---GLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gn--v  112 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY---GLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGN--V  112 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc---cEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEee--e
Confidence            467999999999999999875 3 599999999998776   3333333332211 111 1111111  23445421  1


Q ss_pred             eeecceEEecCCeEEeccEEEEccCCCCC-CC------------CCh----HHHH---HHH----------H---HH---
Q 046865           86 NITENEVLTAEGRRVVYDYLVIATGHKDP-VP------------KTR----TERL---NQY----------Q---AE---  129 (369)
Q Consensus        86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~p------------~~~----~~~~---~~~----------~---~~---  129 (369)
                      .+.. .+..++- .-.||.+|+|+|+.+. +|            +.+    ....   .++          .   ..   
T Consensus       113 ~VG~-Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ay  190 (506)
T PTZ00188        113 HVGV-DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNY  190 (506)
T ss_pred             EecC-ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccccccc
Confidence            1111 1222222 2389999999999854 33            211    0010   000          0   00   


Q ss_pred             HHHHhcCCeEEEEcCChhHHHHHHHHh
Q 046865          130 NQKIKSARSILIVGGGPTGVELAGEIA  156 (369)
Q Consensus       130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~  156 (369)
                      +......++++|||.|.+++++|..|.
T Consensus       191 L~p~~~~~~vvVIG~GNVAlDvARiL~  217 (506)
T PTZ00188        191 LNSFENFTTSIIIGNGNVSLDIARILI  217 (506)
T ss_pred             ccccCCCCcEEEECCCchHHHHHHHHc
Confidence            000114578999999999999999764

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.46  E-value=2e-12  Score=115.61  Aligned_cols=65  Identities=25%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             CccccccC--CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          170 GSRLLEFI--GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       170 ~~~~l~~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..++.|..  ..++.+.+.+.+++.||+++++++|..++.++....+.+.+|+++.||.+|+|+|-.
T Consensus       100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~  166 (408)
T COG2081         100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGK  166 (408)
T ss_pred             CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCc
Confidence            34555542  347889999999999999999999999998877888999999899999999999943

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.25  E-value=7.9e-11  Score=109.60  Aligned_cols=69  Identities=22%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             EEcCccccccC--CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCCCC
Q 046865          167 VHKGSRLLEFI--GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       167 v~~~~~~l~~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.++.|..  ..++.+.+++.+++.||+++++++|..++.+++. ..+.+++++++.+|.||+|+|-..
T Consensus        95 ~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen   95 IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred             EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence            44556666643  3467889999999999999999999999876665 778776777999999999999753

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.21  E-value=1.6e-09  Score=99.51  Aligned_cols=159  Identities=22%  Similarity=0.359  Sum_probs=96.4

Q ss_pred             cceEEEECCChHHHHHHHHccc----CCcEEEEcCCCCccc--cccc-----------cccccC-Cccc-----------
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEI--TWAS-----------LRAMVE-PSFG-----------   63 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~----g~~V~lie~~~~~~~--~~~~-----------~~~~~~-~~~~-----------   63 (369)
                      +++|+|||||+.|+.+|.+|.+    ...|.|+|+.+.+|.  ++..           ...... ++.+           
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~   80 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL   80 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence            4799999999999999998842    233999999987652  1100           000000 1100           


Q ss_pred             ------------ccceeccc---cc--------c---c--cceEEEeeeeeeecc------eEEecCCeEEeccEEEEcc
Q 046865           64 ------------ERSVINHT---DY--------L---V--NGRIVASPAINITEN------EVLTAEGRRVVYDYLVIAT  109 (369)
Q Consensus        64 ------------~~~~~~~~---~~--------~---~--~~~~~~~~~~~~~~~------~v~~~~g~~~~~d~lviAt  109 (369)
                                  ...+.+..   +|        .   .  .+.+++..++.+...      .+...+|....+|-+|+||
T Consensus        81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                        00000000   00        0   0  145566666555432      4566678888999999999


Q ss_pred             CCCCCCCCChHHH-------HHHHH--HHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          110 GHKDPVPKTRTER-------LNQYQ--AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       110 G~~~~~p~~~~~~-------~~~~~--~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      |..+..++.....       +.+..  ..+.......+++|+|+|.+.++....|..+....+||++.|..
T Consensus       161 gh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         161 GHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             cCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            9885544321110       11111  22334455677999999999999999998765667899999874

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.10  E-value=2.1e-10  Score=106.07  Aligned_cols=70  Identities=20%  Similarity=0.152  Sum_probs=52.4

Q ss_pred             eEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCCC
Q 046865          163 KVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       163 ~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .-.+.......+  .+..+.+.+.+.+++.|++++++++|+++..+++.+. |.+.+|+ +.+|.||+|+|...
T Consensus       133 ~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  133 EGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS  203 (358)
T ss_dssp             EEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred             hhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence            334444443322  2357889999999999999999999999988777776 8899996 99999999999863

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.01  E-value=1.8e-10  Score=113.07  Aligned_cols=100  Identities=12%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             hcCCeEEEEcCCh--hHHHHHHHHhhhCCCCeEEEEEcCccccccCC--------------cchHHHHHHHHHhCCcEEE
Q 046865          134 KSARSILIVGGGP--TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG--------------PKAGDKTLDWLISKKVDVK  197 (369)
Q Consensus       134 ~~~~~v~vvG~G~--~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~--------------~~~~~~~~~~l~~~gv~i~  197 (369)
                      ..+.++.|+|+++  ++.|++..+.  ..+.+++++.+..++++.++              ..+...+.+.+++.|++|+
T Consensus       155 ~~~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~  232 (574)
T PRK12842        155 PPLKTITFIGMMFNSSNADLKHFFN--ATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPIL  232 (574)
T ss_pred             CCcccccccceecccchHHHHHHHh--hccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEE
Confidence            4678889999988  7899998876  34677777666555554322              3567778888899999999


Q ss_pred             eCceeeeccCCCCCe-EEEc--CCCc-EEecc-EEEEcCCCCC
Q 046865          198 LGQRVNLDSVSEGSD-TYLT--STGD-TIKAD-CHFLCTGKPV  235 (369)
Q Consensus       198 ~~~~v~~i~~~~~~~-~v~~--~~g~-~i~~d-~vi~a~G~~p  235 (369)
                      +++.|.++..+++.+ .+..  .+++ .+.++ .||+|||..+
T Consensus       233 ~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        233 TGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             eCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            999999887655532 2333  3343 47786 7999999655

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.00  E-value=1.8e-08  Score=93.20  Aligned_cols=146  Identities=17%  Similarity=0.097  Sum_probs=94.4

Q ss_pred             HHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCC--cEEeccE
Q 046865          150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTG--DTIKADC  226 (369)
Q Consensus       150 e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g--~~i~~d~  226 (369)
                      ++...|.+ ..++.|..+--.|.-  -...++.+.+.+.++++|++++.++.|.+++.+++.+. +.+.++  .++++|.
T Consensus       237 ~~~~~L~~-~~g~~v~E~ptlPPS--v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~  313 (419)
T TIGR03378       237 ELLRELEQ-ATGLTLCELPTMPPS--LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADH  313 (419)
T ss_pred             HHHHHHHH-HHCCCEEeCCCCCCC--CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCE
Confidence            44455554 346666655322211  12357889999999999999999999998876666554 444555  4899999


Q ss_pred             EEEcCCCCCCchhhc------cc--ccCCCCCC-----------------CCcEEeCCceeec----cCCCeEEecccCC
Q 046865          227 HFLCTGKPVGSDWLK------DT--ILKDSLDT-----------------DGMLMVDENLRVK----GQKNIFAIGDITD  277 (369)
Q Consensus       227 vi~a~G~~p~~~~l~------~~--~~~~~~~~-----------------~g~i~vd~~l~~~----~~~~i~a~GD~~~  277 (369)
                      +|+|+|..-+..++.      +.  ++++...+                 .=.|.+|++||..    ..+|+||+|-+.+
T Consensus       314 vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~  393 (419)
T TIGR03378       314 FVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLG  393 (419)
T ss_pred             EEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhc
Confidence            999999872222211      11  12211000                 1137899999841    2789999999987


Q ss_pred             ccccc-h---hHHHHHHHHHHHHHH
Q 046865          278 IREIK-Q---GFLAQKHAQVAAKNL  298 (369)
Q Consensus       278 ~~~~~-~---~~~A~~~g~~~a~~i  298 (369)
                      ...+. .   .-.|+..|..||++|
T Consensus       394 G~d~~~~gcG~GVai~Ta~~aa~~i  418 (419)
T TIGR03378       394 GYDPIFEGCGSGVAVSTALHAAEQI  418 (419)
T ss_pred             CCChHhcCCCchhHHHHHHHHHHhh
Confidence            75431 1   237788888888876

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.00  E-value=2.1e-09  Score=99.28  Aligned_cols=65  Identities=12%  Similarity=0.042  Sum_probs=52.2

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcE-EeccEEEEcCCCCCCchhhccccc
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDT-IKADCHFLCTGKPVGSDWLKDTIL  245 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~-i~~d~vi~a~G~~p~~~~l~~~~~  245 (369)
                      ++...+.+.++++|+++++|++|+.++..++ ...+.+.+|++ ++|++||.|.|-.. ..++...++
T Consensus       154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~  220 (429)
T COG0579         154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGI  220 (429)
T ss_pred             HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCC
Confidence            6788888999999999999999999988766 46667788876 99999999999863 344444443

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.98  E-value=9.8e-09  Score=89.76  Aligned_cols=121  Identities=12%  Similarity=0.059  Sum_probs=69.2

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCC--e-EEEcC-----------CCcEEeccEEEEcCCCCC-Cchhhcccc
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS--D-TYLTS-----------TGDTIKADCHFLCTGKPV-GSDWLKDTI  244 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~-~v~~~-----------~g~~i~~d~vi~a~G~~p-~~~~l~~~~  244 (369)
                      ++.+.+.+.+.+.|++++.++.+.++..+++.  + .+.+.           +..+++++.||.|||... ...++....
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence            66777778888899999999999987654441  2 22221           124789999999999653 333332221


Q ss_pred             -cCCCCC---CCCcE--------EeCCceeeccCCCeEEecccCCc--cccchh--HHH-HHHHHHHHHHHHHHh
Q 046865          245 -LKDSLD---TDGML--------MVDENLRVKGQKNIFAIGDITDI--REIKQG--FLA-QKHAQVAAKNLKVLM  302 (369)
Q Consensus       245 -~~~~~~---~~g~i--------~vd~~l~~~~~~~i~a~GD~~~~--~~~~~~--~~A-~~~g~~~a~~i~~~~  302 (369)
                       +.....   ..+..        .|+..-+.  +|++|++|=.+..  ..+..+  .-+ .-+|+.+|+-|+..+
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~  253 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL  253 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence             111110   01111        12222222  8999999976542  111111  122 357888888887544

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.97  E-value=5.7e-09  Score=97.59  Aligned_cols=55  Identities=20%  Similarity=0.071  Sum_probs=45.8

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+.+.+.+.+++.|++++.+++|.+++.+++.+.+.+.++ ++.+|.||+|+|..
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~  199 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence            36777888888889999999999999887666666777666 79999999999975

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.96  E-value=1.6e-08  Score=88.62  Aligned_cols=123  Identities=16%  Similarity=0.071  Sum_probs=71.9

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCC-Ce-EEEcC-----------CCcEEeccEEEEcCCCCCCc-hhhcccc
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SD-TYLTS-----------TGDTIKADCHFLCTGKPVGS-DWLKDTI  244 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~-----------~g~~i~~d~vi~a~G~~p~~-~~l~~~~  244 (369)
                      .++...+.+.+++.|++++.++.+.++..+++ .+ .+...           +..++.++.||.|||..... ..+....
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~  183 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKG  183 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence            36677788888889999999999988765443 22 12111           22479999999999974332 1111100


Q ss_pred             c--CC------CC--CCCCcEEeCCceeeccCCCeEEecccCCc--cccchh--HHH-HHHHHHHHHHHHHHhh
Q 046865          245 L--KD------SL--DTDGMLMVDENLRVKGQKNIFAIGDITDI--REIKQG--FLA-QKHAQVAAKNLKVLMV  303 (369)
Q Consensus       245 ~--~~------~~--~~~g~i~vd~~l~~~~~~~i~a~GD~~~~--~~~~~~--~~A-~~~g~~~a~~i~~~~~  303 (369)
                      .  ..      ++  +......|+..-+.  +|++|++|=++..  ..+..+  .-+ .-+|+.+|+-|+..++
T Consensus       184 ~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~  255 (257)
T PRK04176        184 PELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK  255 (257)
T ss_pred             CCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence            0  00      01  11122334444444  8999999976542  111111  122 3578889998887664

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.94  E-value=7.9e-09  Score=93.26  Aligned_cols=98  Identities=19%  Similarity=0.239  Sum_probs=79.4

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc---c--------cccC-----CcchHHHHHHHHHhCCcEEEeCce
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~---~--------l~~~-----~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      +++|||+|+.|+++|..|.+  .+.+|+++++.+.   +        .|.+     +.++...+.+.+++.|+++++ +.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~   78 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EE   78 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EE
Confidence            58999999999999999974  4899999998651   1        1222     246778888889999999999 78


Q ss_pred             eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      |..++.+++...+.+.+++++.+|.+|+|+|.+|+.+
T Consensus        79 v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        79 VIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            8888776666677777888999999999999988654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.94  E-value=1e-08  Score=97.19  Aligned_cols=55  Identities=20%  Similarity=0.183  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ++-+.+.+.+++.|++++.+++|.++..+++.+.....+|.++.+|.||.|+|..
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN  163 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence            4556677777889999999999998875555443344567789999999999973

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.93  E-value=7.3e-09  Score=97.29  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ++.+.+.+.+.+++.|++++.++.|..++.+++.+.+.+.+| ++.+|.||+|+|...
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence            357888888999999999999999998876666666777666 799999999999864

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.93  E-value=1.4e-08  Score=95.32  Aligned_cols=54  Identities=13%  Similarity=0.029  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE-cCCCcEEeccEEEEcCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL-TSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~i~~d~vi~a~G~  233 (369)
                      .+-+.+.+..++.|++++.++.+..+..+++...+. ..++.++.++.||.|.|.
T Consensus        96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~  150 (396)
T COG0644          96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV  150 (396)
T ss_pred             HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence            444577788889999999999999988776655443 334468999999999996

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.92  E-value=1.8e-08  Score=95.15  Aligned_cols=54  Identities=15%  Similarity=-0.113  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCC-CCC-eEEEcCCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGS-DTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .+...+.+.+++.|++++.+++|..++.. ++. ..+++.+| ++.++.||+|+|-.
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~  239 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence            55666778889999999999999998643 343 34666667 69999988887754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06847 hypothetical protein; Provisional

Probab=98.92  E-value=8.4e-09  Score=96.30  Aligned_cols=58  Identities=21%  Similarity=0.070  Sum_probs=49.6

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      ++.+.+.+.+++.|++++.++++..++.+++.+.+.+.+|+++.+|.||.|+|..+..
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~  165 (375)
T PRK06847        108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV  165 (375)
T ss_pred             HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence            6677888888888999999999999877666677888889899999999999987544

>PRK10015 oxidoreductase; Provisional

Probab=98.91  E-value=1.6e-08  Score=95.69  Aligned_cols=54  Identities=15%  Similarity=0.102  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      .+-+.+.+.+++.|++++.++.|+.+..+++.+.....++.++.+|.||.|+|.
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~  162 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGV  162 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCc
Confidence            444556677778899999999998876555444333344568999999999996

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.91  E-value=1.6e-08  Score=96.61  Aligned_cols=54  Identities=15%  Similarity=0.083  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHh----CC--cEEEeCceeeeccCC-CCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLIS----KK--VDVKLGQRVNLDSVS-EGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~----~g--v~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .+...+.+.+++    .|  ++++++++|+.++.+ ++...|.+.+| ++.+|.||+|+|..
T Consensus       212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~  272 (497)
T PTZ00383        212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGY  272 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChh
Confidence            677888888888    77  889999999999876 34456777777 79999999999975

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.91  E-value=1.2e-08  Score=95.86  Aligned_cols=57  Identities=14%  Similarity=0.049  Sum_probs=49.2

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+++.|++++.+++|++++.+++.+.+++++|+++.+|.||.|.|....
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST  170 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            667778888888999999999999988776777788888889999999999999764

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.89  E-value=3.9e-08  Score=92.51  Aligned_cols=57  Identities=14%  Similarity=0.118  Sum_probs=46.4

Q ss_pred             chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ++.+.+.+.+.+. +++++.++.+..++.+++.+.+++.+|+++.+|.||.|.|....
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence            4566777777666 49999999999988766677888888889999999999998643

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.83  E-value=3.1e-08  Score=92.75  Aligned_cols=55  Identities=20%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcC-CCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTS-TGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~-~g~~i~~d~vi~a~G~~  234 (369)
                      ++.+.+.+.+.+.+ |+++.++.|+.++.+++.+.++++ +|+++.||++|-|-|..
T Consensus       105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~  161 (387)
T COG0654         105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN  161 (387)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence            67788888887766 999999999999888777778888 99999999999999974

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.82  E-value=3.8e-08  Score=91.93  Aligned_cols=55  Identities=16%  Similarity=0.067  Sum_probs=45.9

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+.+.|++++.+++|+.++.+++.+.+.+.+| ++.+|.||+|+|..
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~  203 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAW  203 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcc
Confidence            35666777778889999999999999887666677777777 79999999999975

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.82  E-value=1.4e-07  Score=90.52  Aligned_cols=65  Identities=9%  Similarity=-0.085  Sum_probs=48.5

Q ss_pred             EEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          166 LVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       166 lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ++.+....+  .+..+...+.+.+++.|++|+.++.|..++. ++...+++.+| ++.+|.||+|+|..
T Consensus       172 ~~~~~~g~i--~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       172 FYSPVAASV--QPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             EEeCCCeEE--CHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence            454444322  2346778888889999999999999998864 34456777777 69999999999853

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02463 lycopene beta cyclase

Probab=98.80  E-value=8.3e-08  Score=90.82  Aligned_cols=55  Identities=22%  Similarity=0.188  Sum_probs=45.2

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ++.+.+.+.+.+.|++++ ..+|.+++.+++...|++++|+++++|.||.|+|..+
T Consensus       115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence            566777777888899997 4688888776667778888998999999999999764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.80  E-value=5.2e-08  Score=91.53  Aligned_cols=57  Identities=11%  Similarity=0.015  Sum_probs=46.4

Q ss_pred             chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+++. |++++.++++..++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence            4556677777666 99999999999887666667778888889999999999998653

>TIGR00275 flavoprotein, HI0933 family

Probab=98.80  E-value=6.1e-08  Score=91.02  Aligned_cols=72  Identities=18%  Similarity=0.151  Sum_probs=53.9

Q ss_pred             CCeEEEEEcCcccccc--CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          161 EKKVTLVHKGSRLLEF--IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       161 ~~~v~lv~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      +.+++... ..+++|.  ...++.+.+.+.+++.|+++++++.|.+++.+++.+.+++ +++++.+|.||+|+|..
T Consensus        86 Gv~~~~~~-~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~  159 (400)
T TIGR00275        86 GLELKVEE-DGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL  159 (400)
T ss_pred             CCeeEEec-CCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence            66666543 2344442  3357888899999999999999999999876555556665 45689999999999974

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.79  E-value=2.6e-08  Score=93.92  Aligned_cols=57  Identities=12%  Similarity=0.013  Sum_probs=49.2

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+++.|++++.+++|+.++.+++.+.+++++|+++.+|.||.|.|....
T Consensus       112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK  168 (403)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence            677788888888899999999999987766777788888889999999999998654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.79  E-value=9.2e-08  Score=90.43  Aligned_cols=55  Identities=18%  Similarity=0.163  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC-----cEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG-----DTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-----~~i~~d~vi~a~G~~  234 (369)
                      .+...+.+.+++.|++++.+++|.+++.+++.+.+.+.++     .++++|.||+|+|..
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~  257 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG  257 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence            5667778888999999999999999876555555543332     379999999999975

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.79  E-value=7.1e-08  Score=90.51  Aligned_cols=55  Identities=15%  Similarity=0.021  Sum_probs=46.0

Q ss_pred             chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++.| ++++ ++.+.+++.+++.+.+++.+|+++.+|.+|.|.|...
T Consensus       112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence            56777878888887 9999 8889888766667778888888899999999999864

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.79  E-value=4.6e-08  Score=92.62  Aligned_cols=57  Identities=12%  Similarity=0.045  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCC-C--cEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTST-G--DTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~-g--~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+.+. +|+++.++++++++.+++.+.+++.+ +  .++++|+||.|.|....
T Consensus       122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~  182 (415)
T PRK07364        122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP  182 (415)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence            3556676767664 79999999999987766666677653 2  36999999999997643

>PRK07190 hypothetical protein; Provisional

Probab=98.79  E-value=4.7e-08  Score=93.94  Aligned_cols=56  Identities=16%  Similarity=0.032  Sum_probs=46.8

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++.|++++.+++|+.++.+++.+.+.+.+|+++.++.||.|.|.+.
T Consensus       110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence            45566677788889999999999999877777777777888999999999999864

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.78  E-value=5.7e-08  Score=91.68  Aligned_cols=57  Identities=14%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+++.|++++.++++.+++.+++.+.+++.+|+++.+|.+|.|.|....
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            456677777888899999999999988776777788888889999999999998643

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.78  E-value=7.3e-08  Score=84.27  Aligned_cols=191  Identities=17%  Similarity=0.238  Sum_probs=106.6

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc--cccccccccCCcccccceecc-----ccccccceEEEe
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI--TWASLRAMVEPSFGERSVINH-----TDYLVNGRIVAS   82 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   82 (369)
                      .+..+++|||||.-|+++|++|+ +|.+++|+|+-+....  ........+++.+.+..+...     ..|..       
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~-------   77 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN-------   77 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh-------
Confidence            45789999999999999999997 5899999999764321  111122223333332221111     11110       


Q ss_pred             eeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCC-
Q 046865           83 PAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPE-  161 (369)
Q Consensus        83 ~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~-  161 (369)
                               .....|..+++....+-.|..      +...+.+............+++          ...++.+++|+ 
T Consensus        78 ---------~~~~~g~~~~~~t~~~~~~~~------e~~~~~sv~~~~k~~~l~h~~l----------~seEvrk~fP~~  132 (399)
T KOG2820|consen   78 ---------LPEESGVKLHCGTGLLISGDP------ERQRLDSVAANLKRKGLAHSVL----------ISEEVRKRFPSN  132 (399)
T ss_pred             ---------ChhhhceeecccceeeecCcH------HHHHHHHHHHHHhhhhhhhhhh----------hHHHHHHhCCCC
Confidence                     001123333333333322221      1122333332222222222222          24456666663 


Q ss_pred             -----CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccC---CCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          162 -----KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV---SEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       162 -----~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                           ..+.++.....+.  ......+.++..+++.|+.++.++.+..++.   ++..+.|.+++|..+.++.+|+++|.
T Consensus       133 ~~l~d~~~G~~n~~gGvi--~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga  210 (399)
T KOG2820|consen  133 IPLPDGWQGVVNESGGVI--NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA  210 (399)
T ss_pred             ccCCcchhhcccccccEe--eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence                 1223332222211  1235667888999999999999999887652   34467888999988999999999997


Q ss_pred             CC
Q 046865          234 PV  235 (369)
Q Consensus       234 ~p  235 (369)
                      .-
T Consensus       211 Wi  212 (399)
T KOG2820|consen  211 WI  212 (399)
T ss_pred             HH
Confidence            63

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.78  E-value=3.4e-07  Score=87.60  Aligned_cols=57  Identities=18%  Similarity=0.232  Sum_probs=42.2

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCC--CCCe---EEEcC-CCc-----EEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSD---TYLTS-TGD-----TIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~---~v~~~-~g~-----~i~~d~vi~a~G~~p  235 (369)
                      +.+...+.+.|+++||+|+++++|+++..+  ++..   .+... +|+     ..+.|.||+++|.-.
T Consensus       226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t  293 (576)
T PRK13977        226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT  293 (576)
T ss_pred             hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence            588999999999999999999999998764  2212   22232 232     356899999999743

>PRK09897 hypothetical protein; Provisional

Probab=98.77  E-value=5.3e-08  Score=93.67  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCcc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFE   48 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~   48 (369)
                      +++|+|||||++|+++|.+|.+   ..+|+|||++..+|
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG   39 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence            3689999999999999999853   46999999987654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.76  E-value=9.8e-08  Score=88.78  Aligned_cols=51  Identities=25%  Similarity=0.330  Sum_probs=40.4

Q ss_pred             cchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+.+. |++++.+++|..++..    .+.+.+| ++.+|.||+|+|..
T Consensus       145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~  196 (365)
T TIGR03364       145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGAD  196 (365)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCC
Confidence            46667777777765 9999999999988632    5677767 57899999999975

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.75  E-value=3.5e-08  Score=96.49  Aligned_cols=102  Identities=15%  Similarity=0.062  Sum_probs=68.9

Q ss_pred             hcCCeEEEEcCChhHHHHHHH-------HhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          134 KSARSILIVGGGPTGVELAGE-------IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~-------l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      ..++.++++|++++++|++..       +.  ..+.+|++....+..+..+...+...+.+.+++.|+++++++++.++.
T Consensus       158 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~  235 (557)
T PRK07843        158 KVPLNMVVMQQDYVWLNLLKRHPRGVLRAL--KVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY  235 (557)
T ss_pred             cccccccccHHHHHHHHhhhcCchhHHHHH--HHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence            346778899999999998764       22  124566655544444445566788888999999999999999999887


Q ss_pred             CCCCCe-EEEc-CCCc--EEecc-EEEEcCC-CCCCc
Q 046865          207 VSEGSD-TYLT-STGD--TIKAD-CHFLCTG-KPVGS  237 (369)
Q Consensus       207 ~~~~~~-~v~~-~~g~--~i~~d-~vi~a~G-~~p~~  237 (369)
                      .+++.+ .+.. .+++  .+.++ .||+||| +.+|.
T Consensus       236 ~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~  272 (557)
T PRK07843        236 VEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNE  272 (557)
T ss_pred             EeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCH
Confidence            654432 2322 2443  47785 5888665 44443

>PRK08013 oxidoreductase; Provisional

Probab=98.75  E-value=1.2e-07  Score=89.34  Aligned_cols=56  Identities=7%  Similarity=-0.052  Sum_probs=46.4

Q ss_pred             chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++. |++++.++++..++.+++.+.+++.+|+++++|+||-|-|...
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S  168 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS  168 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence            4556677777664 8999999999998776677788888999999999999999764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.74  E-value=1e-07  Score=89.49  Aligned_cols=55  Identities=13%  Similarity=0.084  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+.+.+ +. +.+++|..++.+++.+.+++++|+++++|.||.|.|...
T Consensus       112 ~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        112 LLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS  167 (388)
T ss_pred             HHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence            45667777777664 66 889999998777777788888888999999999999864

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.73  E-value=1.9e-07  Score=89.67  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=46.4

Q ss_pred             cchHHHHHHHHHhCC-cEEEeCceeeeccCCCC-CeEEEc---CCCc--EEeccEEEEcCCCCCCchhhccc
Q 046865          179 PKAGDKTLDWLISKK-VDVKLGQRVNLDSVSEG-SDTYLT---STGD--TIKADCHFLCTGKPVGSDWLKDT  243 (369)
Q Consensus       179 ~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~-~~~v~~---~~g~--~i~~d~vi~a~G~~p~~~~l~~~  243 (369)
                      ..+.+.+.+.+++.| ++++++++|+.++.+++ .+.+.+   .+|+  ++.++.||+|+|... ..++...
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s-~~L~~~~  253 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA-LPLLQKS  253 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch-HHHHHHc
Confidence            467888888888876 99999999999876444 344543   3353  699999999999863 4444333

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.72  E-value=3.4e-07  Score=88.36  Aligned_cols=48  Identities=17%  Similarity=0.144  Sum_probs=39.6

Q ss_pred             EeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          256 MVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       256 ~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      .+++.|+++..+|+|++|++++...   -..|..||.+|+.|++..+.|++
T Consensus       347 ~l~~~le~k~~~gLf~AGqi~Gt~G---y~eAaa~Gl~Ag~naa~~~~~~~  394 (617)
T TIGR00136       347 QLKPTLETKLIQGLFFAGQINGTTG---YEEAAAQGLMAGINAALKLQNKE  394 (617)
T ss_pred             hCchhheeCCCCCeEEccccCCcch---HHHHHHHHHHHHHHHHHHhcCCC
Confidence            3557899977999999999998543   24788999999999999888765

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07588 hypothetical protein; Provisional

Probab=98.71  E-value=2.2e-07  Score=87.32  Aligned_cols=56  Identities=7%  Similarity=-0.044  Sum_probs=44.6

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+. .+++++.+++|.+++.+++.+.+++++|+++++|.||-|.|....
T Consensus       104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            34455555443 479999999999998777777888899999999999999997543

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.71  E-value=2.9e-07  Score=83.95  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=58.1

Q ss_pred             CccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCCCCchhhc
Q 046865          170 GSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKPVGSDWLK  241 (369)
Q Consensus       170 ~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~  241 (369)
                      .+++....-+.+.+.+++.+++.|+++++++.|.+++..++ ...+.+++|+++++|.||+|+|+.. .+|+.
T Consensus       164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg-~dw~~  235 (486)
T COG2509         164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG-RDWFE  235 (486)
T ss_pred             ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch-HHHHH
Confidence            34454455678999999999999999999999999887666 4577889999999999999999974 45543

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.70  E-value=2.2e-07  Score=81.07  Aligned_cols=152  Identities=16%  Similarity=0.072  Sum_probs=91.9

Q ss_pred             HHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCc--EEec
Q 046865          148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGD--TIKA  224 (369)
Q Consensus       148 g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~--~i~~  224 (369)
                      ..++-..|.+. .+..+..+--.|.-+  ..-++.+.+.+.+++.|.-+..+-+|...+..++.+ .+-+.++.  .+.+
T Consensus       230 ~~~~~~aL~~~-~~~~l~elPtlPPSl--lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a  306 (421)
T COG3075         230 NDELWDALNDV-LGLALFELPTLPPSL--LGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRA  306 (421)
T ss_pred             cHHHHHHHHHH-hCCceeecCCCCcch--hhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCCh
Confidence            34444555542 456665553222111  223788999999999999999999998877666544 34455554  5679


Q ss_pred             cEEEEcCCCCCCch------hhcccc--cCCCCCC-----------------CCcEEeCCceeecc----CCCeEEeccc
Q 046865          225 DCHFLCTGKPVGSD------WLKDTI--LKDSLDT-----------------DGMLMVDENLRVKG----QKNIFAIGDI  275 (369)
Q Consensus       225 d~vi~a~G~~p~~~------~l~~~~--~~~~~~~-----------------~g~i~vd~~l~~~~----~~~i~a~GD~  275 (369)
                      |..++|+|.-.+..      .+.+.-  +++.-++                 .=.+.+|+++|...    ..|+||+|.+
T Consensus       307 ~~~VLAsGsffskGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGav  386 (421)
T COG3075         307 DFYVLASGSFFSKGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAV  386 (421)
T ss_pred             hHeeeeccccccccchhhhhhhhcchhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHH
Confidence            99999999633211      111100  0110000                 11266777777632    5799999999


Q ss_pred             CCccccch----hHHHHHHHHHHHHHHHHHh
Q 046865          276 TDIREIKQ----GFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       276 ~~~~~~~~----~~~A~~~g~~~a~~i~~~~  302 (369)
                      .+...+-.    +-.|.-.|..+|+.|+...
T Consensus       387 lgGfdpi~egcGsGVaivta~~aa~qi~~~~  417 (421)
T COG3075         387 LGGFDPIAEGCGSGVAIVTALHAAEQIAERA  417 (421)
T ss_pred             hcCCcHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence            88765411    1356777888888887554

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.69  E-value=3.7e-07  Score=86.53  Aligned_cols=55  Identities=18%  Similarity=0.087  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+...+.+.+++.|++|+++++|+.++.+++.+ .+++.++ ++.+|.||+|+|...
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            667778888899999999999999987655543 3555544 799999999999753

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.69  E-value=1.6e-07  Score=89.54  Aligned_cols=65  Identities=22%  Similarity=0.136  Sum_probs=45.9

Q ss_pred             cchHHHHHHHHHh-CCcEEEeCceeeeccCC-CCCeEEE---cCCCc--EEeccEEEEcCCCCCCchhhcccc
Q 046865          179 PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVS-EGSDTYL---TSTGD--TIKADCHFLCTGKPVGSDWLKDTI  244 (369)
Q Consensus       179 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~-~~~~~v~---~~~g~--~i~~d~vi~a~G~~p~~~~l~~~~  244 (369)
                      ..+.+.+.+.+.+ .|+++++++.|..++.+ ++...+.   +.+++  ++++|.||+|+|... ..++...+
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~G  255 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSG  255 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcC
Confidence            3667777777754 58999999999998755 4455554   34443  689999999999874 44444433

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.68  E-value=2.2e-07  Score=89.10  Aligned_cols=57  Identities=21%  Similarity=0.295  Sum_probs=44.0

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeEEEc---CCC--cEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDTYLT---STG--DTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~v~~---~~g--~~i~~d~vi~a~G~~p  235 (369)
                      ..+...+.+.++++|++++++++|+.++.++ +.+.+.+   .+|  .++.+|.||+|+|...
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            4788888889999999999999999987644 3344442   334  2689999999999763

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK09126 hypothetical protein; Provisional

Probab=98.68  E-value=4.8e-07  Score=85.02  Aligned_cols=57  Identities=9%  Similarity=0.122  Sum_probs=45.1

Q ss_pred             hHHHHHHHH-HhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          181 AGDKTLDWL-ISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       181 ~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      +.+.+.+.+ +..|++++.+++++.++.+++.+.+++++|+++++|.||.|.|.....
T Consensus       112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v  169 (392)
T PRK09126        112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSAT  169 (392)
T ss_pred             HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchh
Confidence            444555554 456999999999999877666677888888899999999999987543

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.67  E-value=2.2e-07  Score=89.48  Aligned_cols=55  Identities=20%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ..+.+.+.+.+++.|++|+++++|++|..+++ .+++.+.+|+.+++|.||.+...
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            37889999999999999999999999988765 46777777778999999998876

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.67  E-value=1.3e-07  Score=90.35  Aligned_cols=102  Identities=22%  Similarity=0.206  Sum_probs=74.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc------cccC----Cc---chHHHHHHHHHhCCcEEEeCceee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL------LEFI----GP---KAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~------l~~~----~~---~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      ++++|||+|+.|+.+|..|++..++.+|+++++++.+      ++.+    .+   ++.....+.+++.||+++.++.|.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            3799999999999999999865456799999998753      1111    11   122233466788899999999999


Q ss_pred             eccCCCCCeEEEc-CCCcEEe--ccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLT-STGDTIK--ADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~-~~g~~i~--~d~vi~a~G~~p~~~  238 (369)
                      .++.+++.+.+.. .++++++  +|.+|+|||.+|+.+
T Consensus        81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            8876665555543 2355666  999999999998654

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.67  E-value=9.6e-09  Score=100.92  Aligned_cols=99  Identities=16%  Similarity=0.068  Sum_probs=60.6

Q ss_pred             cCCeEEEEcCChhH-HHHHHHHhhhCCCCeEEEEEcCccccc--------------cCCcchHHHHHHHHHhCCcEEEeC
Q 046865          135 SARSILIVGGGPTG-VELAGEIAVDFPEKKVTLVHKGSRLLE--------------FIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       135 ~~~~v~vvG~G~~g-~e~a~~l~~~~~~~~v~lv~~~~~~l~--------------~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      .+.++.++|+++++ .+++..+..  .+....+..+..+++.              .....+...+.+.+++.|++++++
T Consensus       160 ~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~  237 (581)
T PRK06134        160 PLRETSFMGMPIMAGADLAAFLNP--TRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWES  237 (581)
T ss_pred             ccccccccccccccHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcC
Confidence            44566678877665 666665432  1333333222222111              112356788888999999999999


Q ss_pred             ceeeeccCCCCCe---EEEcCCCc-EEec-cEEEEcCCCCC
Q 046865          200 QRVNLDSVSEGSD---TYLTSTGD-TIKA-DCHFLCTGKPV  235 (369)
Q Consensus       200 ~~v~~i~~~~~~~---~v~~~~g~-~i~~-d~vi~a~G~~p  235 (369)
                      ++++++..+++.+   .+...++. ++.+ +.||+|+|-..
T Consensus       238 t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        238 APARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             CEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            9999876554432   22323343 5788 99999998643

>PRK06996 hypothetical protein; Provisional

Probab=98.66  E-value=1.6e-07  Score=88.39  Aligned_cols=54  Identities=11%  Similarity=-0.023  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC---cEEeccEEEEcCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG---DTIKADCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~i~~d~vi~a~G~  233 (369)
                      .+.+.+.+.+++.|++++.++++..++.+++.+.+.+.++   +++.+|+||-|.|.
T Consensus       116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence            6778888889889999999999998877667777777654   58999999999995

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.66  E-value=1.7e-07  Score=87.77  Aligned_cols=57  Identities=9%  Similarity=0.007  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      +...+.+.+++ .+++++.++++++++.+++.+.+++++|+++++|+||.|.|.....
T Consensus       112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v  169 (384)
T PRK08849        112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV  169 (384)
T ss_pred             HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence            34455555544 4799999999999987777788889999999999999999987543

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.65  E-value=2.1e-07  Score=90.09  Aligned_cols=57  Identities=14%  Similarity=0.033  Sum_probs=43.5

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC---Cc--EEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST---GD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~d~vi~a~G~~p  235 (369)
                      ..+...+.+.+++.|++++.+++|..+..+++.+.+++.+   |+  ++.++.||.|+|...
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            4566677777888999999999999887655545555432   43  689999999999753

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.65  E-value=1.7e-07  Score=91.41  Aligned_cols=56  Identities=11%  Similarity=-0.117  Sum_probs=42.5

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc---CCC--cEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT---STG--DTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.++++|++++++++|+.+..+++.+ .+++   .++  .++.++.||.|+|..
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w  210 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW  210 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence            4677777788889999999999999987665533 2333   233  379999999999975

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.65  E-value=4.2e-07  Score=87.03  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             EEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       195 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      +|+++++|++|+.+++.+.+++.+|+++.+|.||+|+..
T Consensus       235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence            899999999998777777778888889999999999763

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.65  E-value=2.4e-07  Score=86.70  Aligned_cols=56  Identities=13%  Similarity=0.100  Sum_probs=47.5

Q ss_pred             chHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ++.+.+.+.+.+ .|++++.++++++++.+++.+.+++++|+++.+|.||.|.|...
T Consensus       106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            567788888877 49999999999998766667778888888999999999999763

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.65  E-value=2.6e-07  Score=86.86  Aligned_cols=100  Identities=17%  Similarity=0.253  Sum_probs=73.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---ccCCcchH---------HHHHHHHHhCCcEEEeCceee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFIGPKAG---------DKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~~~~~~~~---------~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      .++++|||||+.|+.+|..|++..+..+|+++++.+...   +.+.+.+.         ..-.+.+.+.+|+++.++.|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            468999999999999999998765567899998765321   11111110         001345677899999999998


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      .+..++  ..+.+++|+++.+|.+|+|||.+|..
T Consensus        83 ~id~~~--~~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGRDT--RELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEECCC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence            876543  45667788899999999999998853

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.65  E-value=6.5e-07  Score=84.49  Aligned_cols=58  Identities=9%  Similarity=-0.146  Sum_probs=48.8

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCC--CeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG--SDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .++.+.+.+.++..|.+++++++|.+|..+++  ...+++++|+++.++.||....+.|.
T Consensus       232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            36888888888999999999999999976543  25678889999999999998888765

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.64  E-value=4e-07  Score=85.29  Aligned_cols=56  Identities=13%  Similarity=0.000  Sum_probs=47.8

Q ss_pred             chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++.+ ++++.+++|+.++.+++.+.+++++|+++.+|.||.|.|...
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence            56677888888887 999999999998877777778888998999999999999864

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07233 hypothetical protein; Provisional

Probab=98.63  E-value=7.2e-08  Score=91.84  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=45.6

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ..+.+.+.+.+++.|++|+++++|.+++.+++.+.+...+++++++|.||+|++.
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCH
Confidence            3678888888999999999999999998766655544566778999999999875

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.62  E-value=1.1e-07  Score=95.30  Aligned_cols=56  Identities=13%  Similarity=0.086  Sum_probs=46.9

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ..+...+.+.+++ |++++.++.|+.++.+++.+.+.+.+|..+.+|.||+|+|...
T Consensus       408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence            4778888888888 9999999999988766666777777787788999999999864

>PRK05868 hypothetical protein; Validated

Probab=98.62  E-value=2.8e-07  Score=85.85  Aligned_cols=46  Identities=9%  Similarity=-0.040  Sum_probs=39.9

Q ss_pred             hCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          191 SKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       191 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ..|++++++++++.++.+++.+.+++++|+++++|+||-|-|.+..
T Consensus       116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~  161 (372)
T PRK05868        116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN  161 (372)
T ss_pred             cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence            4689999999999987666778888999999999999999997643

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.61  E-value=5.7e-07  Score=88.01  Aligned_cols=55  Identities=20%  Similarity=0.216  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcC--CC--cEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTS--TG--DTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~--~g--~~i~~d~vi~a~G~~  234 (369)
                      .+.+.+.+.+.+. |++++.+++++.++.+++.+++++.  +|  +++++|+||-|.|..
T Consensus       114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~  173 (538)
T PRK06183        114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGAN  173 (538)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCc
Confidence            4556677777664 9999999999999877777777664  56  479999999999974

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.61  E-value=4.4e-07  Score=83.13  Aligned_cols=46  Identities=24%  Similarity=0.359  Sum_probs=39.4

Q ss_pred             CCcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCcccccccccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA   56 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~~~~~~   56 (369)
                      ....||||||+|.+||++|+.|++ |++|+|+|.++.+|......+.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~   51 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA   51 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence            456899999999999999999986 9999999999999876554443

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.60  E-value=5.5e-08  Score=89.81  Aligned_cols=56  Identities=21%  Similarity=0.229  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC---CCc--EEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS---TGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++.|++++.++++..++.+++.+.+.+.   +|+  ++++|+||-|-|...
T Consensus       112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S  172 (356)
T PF01494_consen  112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS  172 (356)
T ss_dssp             HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred             HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence            56778888888889999999999988766665544432   342  689999999999864

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06184 hypothetical protein; Provisional

Probab=98.60  E-value=2.1e-07  Score=90.32  Aligned_cols=55  Identities=13%  Similarity=0.021  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc---CCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT---STGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~d~vi~a~G~~  234 (369)
                      .+.+.+.+.+++.|++++.++++..++.+++.+++++   .+++++.+|.||.|.|..
T Consensus       110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~  167 (502)
T PRK06184        110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGR  167 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCc
Confidence            4556777888888999999999999987766676665   556789999999999974

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.59  E-value=2e-07  Score=79.03  Aligned_cols=92  Identities=24%  Similarity=0.329  Sum_probs=66.0

Q ss_pred             EEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCccccc--------------c-C--------------------------
Q 046865          140 LIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLE--------------F-I--------------------------  177 (369)
Q Consensus       140 ~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~l~--------------~-~--------------------------  177 (369)
                      +|||+|+.|+-+|..|.+.  +.+ ++++++.+.+..              . +                          
T Consensus         1 ~IIGaG~aGl~~a~~l~~~--g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER--GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT--T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred             CEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence            6999999999999999864  777 999998743310              0 0                          


Q ss_pred             --CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          178 --GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       178 --~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                        .+++.+++++..++.+++++++++|++++.+++...+++.+++++.+|.||+|||.
T Consensus        79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~  136 (203)
T PF13738_consen   79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH  136 (203)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred             CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence              01344677888888999999999999999888788899998888999999999997

...

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.59  E-value=8.3e-08  Score=87.82  Aligned_cols=45  Identities=20%  Similarity=0.163  Sum_probs=36.1

Q ss_pred             CCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865          258 DENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       258 d~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                      +..|+++..||+|++|+.++...   -..|..||-+|+.|+++.++|+
T Consensus       347 ~~~l~~k~~~~lf~AGqi~G~~G---y~eaaa~G~~ag~na~~~~~g~  391 (392)
T PF01134_consen  347 LNTLETKKIPGLFFAGQINGTEG---YEEAAAQGLIAGINAARRLQGK  391 (392)
T ss_dssp             BTTSBBSSSBTEEE-GGGGTB-S---HHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ccceEECCCCCceECCCCcchhH---HHHHHHHHHHHHHHHHHHHcCC
Confidence            34688888999999999998743   2478889999999999988775

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.59  E-value=5.1e-07  Score=86.77  Aligned_cols=51  Identities=20%  Similarity=0.095  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G  232 (369)
                      .+.+.+.+.+.+  ++|+++++|+.|+.+++.+.+.+.+|+++.+|.||+|+.
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence            455555555543  689999999999877777778778888899999999985

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.59  E-value=3.8e-07  Score=88.29  Aligned_cols=57  Identities=11%  Similarity=-0.082  Sum_probs=44.3

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC----cEEeccEEEEcCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG----DTIKADCHFLCTGKP  234 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~i~~d~vi~a~G~~  234 (369)
                      +..+...+.+.+++.|++++.+++|..+..+++...+++.++    .++.++.||.|+|..
T Consensus       154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~w  214 (502)
T PRK13369        154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPW  214 (502)
T ss_pred             HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCcc
Confidence            346667777788899999999999998876655555655443    258999999999975

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.59  E-value=3.7e-07  Score=88.42  Aligned_cols=58  Identities=16%  Similarity=0.095  Sum_probs=43.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC---eEEEcCCC--cEEeccEEEEcCC-CCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS---DTYLTSTG--DTIKADCHFLCTG-KPVG  236 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g--~~i~~d~vi~a~G-~~p~  236 (369)
                      ..+...+.+.+++.|+++++++.+.++..+++.   +.+...++  .++.++.||+|+| +..|
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n  253 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN  253 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence            356778888899999999999999998765443   23333443  3688999999998 5544

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.58  E-value=4e-07  Score=93.96  Aligned_cols=50  Identities=18%  Similarity=0.191  Sum_probs=40.0

Q ss_pred             CCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865          252 DGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       252 ~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      .|+|.||.+++| +.|++||+|||++.+. .+...|.-.|+.++.++...+.
T Consensus       361 ~GGi~vd~~~~T-~v~GLfAaGE~a~~~~-nsl~~a~v~G~~Ag~~a~~~~~  410 (897)
T PRK13800        361 ASGVWVDEHART-TVPGLYAAGDLACVPH-NYMIGAFVFGDLAGAHAAGTLA  410 (897)
T ss_pred             cceEEecCCCcc-cCCCeEechhccCcch-hhhhhHHHhHHHHHHHHHHHHh
Confidence            478999999998 6999999999976532 3445677889999999877654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.58  E-value=4.5e-07  Score=88.05  Aligned_cols=102  Identities=20%  Similarity=0.267  Sum_probs=80.3

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC--cccc-----------c-cCCcchHHHHHHHHHhCCcEEEeC
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG--SRLL-----------E-FIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~--~~~l-----------~-~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      ....+++|||||+.|+.+|..+++  .|.+|+++...  ..+.           + ...+++.+.+.+.+++.|++++++
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~  287 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN  287 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence            345789999999999999999984  59999999642  1111           0 123467778888888999999999


Q ss_pred             ceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      ++|..+..+++...+.+.+|+++.+|.+|+|+|.+|..
T Consensus       288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence            99998876555667777888899999999999998743

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.57  E-value=6e-07  Score=84.45  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      +.+.+.+.+.+ .|++++.+++++++..+++.+.+++++|.++.+|.||.|.|...
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence            44566666655 58999999999988766667778888888899999999999864

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.57  E-value=6.8e-07  Score=83.86  Aligned_cols=55  Identities=13%  Similarity=-0.019  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCC-CCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+.+.|++++. ..+..++.+ ++...+++.+|++++++.||.|+|..+
T Consensus        86 ~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        86 RLHEELLQKCPEGGVLWLE-RKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHhcCcEEEc-cEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            5667777888888999874 467766655 445667777888999999999999765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.57  E-value=1.8e-06  Score=83.90  Aligned_cols=56  Identities=11%  Similarity=0.017  Sum_probs=47.3

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+.+.+.+.+++.|++|++++.|.++..+++. +.|++.+|+++.+|.||+|++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence            367888899999999999999999998766543 56778888899999999998863

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK08244 hypothetical protein; Provisional

Probab=98.56  E-value=3.2e-07  Score=88.80  Aligned_cols=56  Identities=13%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC--CC-cEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS--TG-DTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~--~g-~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++.|++++.++++..++.+++.+.+++.  +| +++++|.||.|.|...
T Consensus       101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S  159 (493)
T PRK08244        101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS  159 (493)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence            45667777888889999999999998776666666543  45 4799999999999864

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.55  E-value=8.9e-07  Score=82.47  Aligned_cols=56  Identities=16%  Similarity=0.096  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+...+ .++.++.|..++..++...+++++|+++.++.||-|.|..+.
T Consensus        88 ~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   88 DFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             HHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence            56667777777444 567788999998776667788899999999999999996543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.54  E-value=3.4e-06  Score=78.62  Aligned_cols=46  Identities=22%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             CCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          258 DENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       258 d~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      ++.|+++..||+|.+|-+++...   =..|..||-+|+-|++..+.|++
T Consensus       321 ~~~l~~k~~~~lf~AGQi~G~~G---Y~Eaaa~Gl~agina~~~~~~~~  366 (433)
T TIGR00137       321 TASLHFKDRQTLFFAGQLTGVEG---YVASTAGGWLAGINAARLALGEP  366 (433)
T ss_pred             hHHhccCCCCCEEECcccccchH---HHHHHHHHHHHHHHHHHHHcCCC
Confidence            44688888999999999997643   24688999999999999998875

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.54  E-value=6.2e-07  Score=87.17  Aligned_cols=100  Identities=24%  Similarity=0.266  Sum_probs=80.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC--ccc--------cc----cCCcchHHHHHHHHHhCCcEEEeCce
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG--SRL--------LE----FIGPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~--~~~--------l~----~~~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      ..+++|||||+.|+.+|..+++  .|.+++++.+.  .++        ++    ...+++.+.+.+.+++.|++++.+++
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~  288 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQR  288 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCE
Confidence            4589999999999999999984  48999999753  111        01    12346778888999999999999999


Q ss_pred             eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      +..+...++...+.+.+|+++.+|.+|+|+|.+|..
T Consensus       289 V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        289 ASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            998877656667777888899999999999997743

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.53  E-value=1.3e-06  Score=83.88  Aligned_cols=50  Identities=18%  Similarity=0.112  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          182 GDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       182 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      .+.+.+.+.  ..+|+++++|+.|+.+++.+.+++++|+++.+|.||+|+..
T Consensus       228 ~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~  277 (462)
T TIGR00562       228 PEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPH  277 (462)
T ss_pred             HHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCH
Confidence            344444443  27899999999998777777788888888999999999874

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02268 probable polyamine oxidase

Probab=98.52  E-value=4.2e-07  Score=86.60  Aligned_cols=49  Identities=20%  Similarity=0.223  Sum_probs=39.3

Q ss_pred             HHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          184 KTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       184 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      .+.+.|. .+++|+++++|+.++..++.+.|++.+|+++.+|.||+|+..
T Consensus       202 ~l~~~l~-~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~  250 (435)
T PLN02268        202 PVINTLA-KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL  250 (435)
T ss_pred             HHHHHHh-ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence            3444443 367899999999998777778888888888999999999754

>PRK07045 putative monooxygenase; Reviewed

Probab=98.52  E-value=9e-07  Score=83.03  Aligned_cols=56  Identities=11%  Similarity=0.066  Sum_probs=43.8

Q ss_pred             chHHHHHHHHH-hCCcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLI-SKKVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ++.+.+.+.+. ..|++++.+++++.++.+++.  +.+++++|+++.+|+||-|.|...
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence            45566666664 458999999999988765443  357788889999999999999864

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.52  E-value=1.4e-06  Score=81.33  Aligned_cols=56  Identities=9%  Similarity=0.057  Sum_probs=46.0

Q ss_pred             chHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ++.+.+.+.+++.+ ++++.++++.++..+++.+.+.++++ ++.+|+||-|-|....
T Consensus       105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617        105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            66778888777764 99999999999876666777888776 8999999999998643

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.51  E-value=1.3e-06  Score=82.39  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      +.+.+.+.+.+ .|++++.+++++.++.+++.+.+++++|+++++|+||.|.|...
T Consensus       113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S  168 (405)
T PRK08850        113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS  168 (405)
T ss_pred             HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence            44456666655 47999999999998776667788888999999999999999754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.50  E-value=9.6e-07  Score=84.10  Aligned_cols=102  Identities=18%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------ccCC----cchHHHH----HHHHHhCCcEEEeCcee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EFIG----PKAGDKT----LDWLISKKVDVKLGQRV  202 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------~~~~----~~~~~~~----~~~l~~~gv~i~~~~~v  202 (369)
                      ++|+|||||+.|+.+|..|++..++.+|+++++.+.+.      +..-    +...+.+    .+..++.|++++.+++|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            47999999999999999998766688999999986431      1110    0011111    23335679999999999


Q ss_pred             eeccCCCCCeEEEcCC-Cc--EEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLTST-GD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~-g~--~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.+++.+.+...+ ++  ++++|.+|+|||.+|+.+
T Consensus        82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~  120 (438)
T PRK13512         82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL  120 (438)
T ss_pred             EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence            9998766555554332 22  468999999999998643

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.50  E-value=5.1e-07  Score=83.98  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=73.5

Q ss_pred             eEEEEcCChhHHHHHHHHhhh-CCCCeEEEEEcCcccc-----ccC------CcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          138 SILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLL-----EFI------GPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~-~~~~~v~lv~~~~~~l-----~~~------~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      +++|||||+.|+.+|..+.++ .++.+|+++++.+...     +.+      ..++...+.+.+++.||+++.+ .|..+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999988543 3578999999876531     111      1123334566777889999886 67777


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchh
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDW  239 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~  239 (369)
                      +.+++  .|.+.+|+++++|.+|+|||.+|+.+.
T Consensus        80 d~~~~--~V~~~~g~~~~yD~LviAtG~~~~~~~  111 (364)
T TIGR03169        80 DPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSG  111 (364)
T ss_pred             ecccC--EEEECCCCcccccEEEEccCCCCCCCC
Confidence            65443  577788888999999999999887543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.50  E-value=3.1e-06  Score=81.40  Aligned_cols=55  Identities=15%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc--CCC--cEEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT--STG--DTIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g--~~i~~d~vi~a~G~  233 (369)
                      ..+...+.+.+++.|+++++++++.++..+++.+ .+..  .++  ..+.++.||+|+|-
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence            4577788888899999999999999887655433 2333  233  36889999999984

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.49  E-value=2.9e-06  Score=79.98  Aligned_cols=56  Identities=20%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEc---CCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLT---STGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~d~vi~a~G~~p  235 (369)
                      ++.+.+.+.+.+ .+++++.+++++.++.+++.+.+++   .+++++++|+||-|-|...
T Consensus       108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S  167 (400)
T PRK06475        108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS  167 (400)
T ss_pred             HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence            566777777765 4899999999999887666666665   3345799999999999853

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.47  E-value=6.5e-07  Score=83.93  Aligned_cols=55  Identities=18%  Similarity=-0.033  Sum_probs=42.7

Q ss_pred             cchHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+++.| ..+..++.+..++.+.....+.+.+|+ +.+|.||+|+|..
T Consensus       156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~  211 (387)
T COG0665         156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAW  211 (387)
T ss_pred             HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchH
Confidence            477888889999999 556668888877653234567777775 9999999999965

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.47  E-value=5.1e-07  Score=85.66  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=33.3

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~   48 (369)
                      ..+||||||+|.||++||.+++.|.+|+||||.+..+
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~g   39 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNE   39 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCC
Confidence            4589999999999999999988899999999987654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.47  E-value=1.6e-06  Score=82.78  Aligned_cols=55  Identities=16%  Similarity=0.111  Sum_probs=41.5

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCC-CC---eEEEcCCCc--EEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GS---DTYLTSTGD--TIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~---~~v~~~~g~--~i~~d~vi~a~G~  233 (369)
                      ..+.+.+.+.+++.|++++++++++++..++ +.   +.+...+++  .+.++.||+|+|-
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg  190 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG  190 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence            4678888899999999999999999987643 32   223334443  4789999999994

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.46  E-value=1.2e-06  Score=81.88  Aligned_cols=99  Identities=15%  Similarity=0.080  Sum_probs=72.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---ccC--------C-cchHH-HHHHHHHhCCcEEEeCceee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFI--------G-PKAGD-KTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~~~--------~-~~~~~-~~~~~l~~~gv~i~~~~~v~  203 (369)
                      ++++|||+|+.|+.+|..|.+..++.+|+++.+.+...   +.+        . .++.. ...+.+++.|++++.++.|.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            57999999999999999998766778999999876421   111        0 11111 13355677899999999998


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .++.++.  .+.+ +++++++|.+|+|||.+|..+
T Consensus        83 ~id~~~~--~v~~-~~~~~~yd~LVlATG~~~~~p  114 (377)
T PRK04965         83 DIDAEAQ--VVKS-QGNQWQYDKLVLATGASAFVP  114 (377)
T ss_pred             EEECCCC--EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence            8875443  3444 566899999999999988643

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.45  E-value=1.3e-06  Score=82.04  Aligned_cols=56  Identities=7%  Similarity=-0.000  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccC-CCCCeEEEc-CCCc--EEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSV-SEGSDTYLT-STGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+...+.|++++.++++.+++. +++...+++ .+|+  ++++|+||-|-|...
T Consensus       104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S  163 (392)
T PRK08243        104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHG  163 (392)
T ss_pred             HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCC
Confidence            3445566666778999999999988765 444555665 4664  689999999999753

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.44  E-value=2e-06  Score=81.95  Aligned_cols=57  Identities=11%  Similarity=0.044  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHhCC---cEEEeCceeeeccC-------CCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKK---VDVKLGQRVNLDSV-------SEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~g---v~i~~~~~v~~i~~-------~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+++.+   ++++.++++.+++.       +++.+++++.+|+++.+|++|-|-|....
T Consensus       118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~  184 (437)
T TIGR01989       118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN  184 (437)
T ss_pred             HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence            45566777777664   99999999998863       23467888889999999999999998643

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06185 hypothetical protein; Provisional

Probab=98.44  E-value=3.5e-06  Score=79.57  Aligned_cols=56  Identities=18%  Similarity=0.098  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe---EEEcCCCc-EEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD---TYLTSTGD-TIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~---~v~~~~g~-~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++ .|++++.++.+.++..+++.+   .+...+|+ ++.+|.||.|.|...
T Consensus       109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S  169 (407)
T PRK06185        109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS  169 (407)
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence            455666666655 489999999999887655533   34445664 799999999999863

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.44  E-value=5e-07  Score=87.34  Aligned_cols=44  Identities=20%  Similarity=0.190  Sum_probs=36.3

Q ss_pred             eCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865          257 VDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       257 vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      .+..|+++..+|+|.+|-+++...   =..|..||-+|+-|.+..+.
T Consensus       350 L~~~Le~k~~~~lf~AGQinGt~G---YeEaaaqGl~AgiNaa~~~~  393 (618)
T PRK05192        350 LKPTLETKKIKGLFFAGQINGTTG---YEEAAAQGLIAGINAALKVQ  393 (618)
T ss_pred             cchhheecCCCCeEECcccCCChH---HHHHHHHHHHHHHHHHHHhc
Confidence            456789988999999999997743   24788999999999998776

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.42  E-value=1.2e-06  Score=89.22  Aligned_cols=100  Identities=15%  Similarity=0.185  Sum_probs=75.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhC--CCCeEEEEEcCcccc------c-cCC----cchHHHHHHHHHhCCcEEEeCceee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDF--PEKKVTLVHKGSRLL------E-FIG----PKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~--~~~~v~lv~~~~~~l------~-~~~----~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      ++++|||+|+.|+.+|..|.++.  .+.+|+++.+.+.+.      + .+.    .++.....+.+++.||+++.++.|.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~   83 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI   83 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence            58999999999999999987542  357999999887642      1 111    1222223466788999999999998


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .+..+  ...|.+.+|+++++|.+|+|||.+|..+
T Consensus        84 ~Id~~--~~~V~~~~G~~i~yD~LVIATGs~p~~p  116 (847)
T PRK14989         84 TINRQ--EKVIHSSAGRTVFYDKLIMATGSYPWIP  116 (847)
T ss_pred             EEeCC--CcEEEECCCcEEECCEEEECCCCCcCCC
Confidence            87643  3456778888999999999999988654

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.39  E-value=2.3e-06  Score=80.04  Aligned_cols=51  Identities=16%  Similarity=0.118  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      .+.+.+.+.+.   .+|+++++|+.+..+....++.+.+|+++.+|.||+++-.
T Consensus       216 ~l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~  266 (444)
T COG1232         216 SLIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPL  266 (444)
T ss_pred             HHHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCH
Confidence            44555555554   4499999999998876677888889999999999999653

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.39  E-value=5e-06  Score=76.93  Aligned_cols=32  Identities=38%  Similarity=0.454  Sum_probs=30.2

Q ss_pred             eEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~   46 (369)
                      ||+|||+|.|||++|..|.+.++|+|+.|++.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            89999999999999999998899999999864

>PLN02612 phytoene desaturase

Probab=98.39  E-value=1e-05  Score=79.47  Aligned_cols=55  Identities=16%  Similarity=0.248  Sum_probs=45.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ..+.+.+.+.+++.|++|+++++|.+|+.+++.  +.+.+.+|+++++|.||+|+..
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            457788888898899999999999999865443  3466778889999999999853

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.37  E-value=3.6e-07  Score=62.44  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             EECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc
Q 046865           18 VIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (369)
Q Consensus        18 IIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~   52 (369)
                      |||||++||++|+.|+ .|++|+|+|+++.++..+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~   36 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR   36 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence            8999999999999997 4899999999998875443

...

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.37  E-value=1.4e-06  Score=88.69  Aligned_cols=98  Identities=17%  Similarity=0.172  Sum_probs=74.1

Q ss_pred             EEEEcCChhHHHHHHHHhhhC-CCCeEEEEEcCcccc------cc-CC-----cchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          139 ILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKGSRLL------EF-IG-----PKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       139 v~vvG~G~~g~e~a~~l~~~~-~~~~v~lv~~~~~~l------~~-~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ++|||+|+.|+.+|..+.+.. .+.+|+++++.+.+.      +. +.     +++.....+.+++.||++++++.|..+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999887543 457999999887641      11 11     112222356778899999999999988


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      +.+.  ..|++.+|+++++|.+|+|||..|..+
T Consensus        81 d~~~--k~V~~~~g~~~~yD~LVlATGs~p~~p  111 (785)
T TIGR02374        81 DTDQ--KQVITDAGRTLSYDKLILATGSYPFIL  111 (785)
T ss_pred             ECCC--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence            6543  457778888999999999999988654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.37  E-value=3.2e-06  Score=80.58  Aligned_cols=102  Identities=15%  Similarity=0.216  Sum_probs=75.6

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------------------------
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------------------  175 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------------------------------  175 (369)
                      ..++|+|||+|++|+-+|..|.+  .|.+|+++++++.+..                                       
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m   86 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM   86 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence            35889999999999999999985  3889999998653211                                       


Q ss_pred             ------cCC---------------cchHHHHHHHHHhCCcE--EEeCceeeeccCCCCCeEEEcCCC--c--EEeccEEE
Q 046865          176 ------FIG---------------PKAGDKTLDWLISKKVD--VKLGQRVNLDSVSEGSDTYLTSTG--D--TIKADCHF  228 (369)
Q Consensus       176 ------~~~---------------~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g--~--~i~~d~vi  228 (369)
                            ..+               .++.+++++..+..|++  |.++++|..++..++...|++.++  .  +..+|.||
T Consensus        87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEE
Confidence                  000               24666777777788888  899999999987666666765432  2  46799999


Q ss_pred             EcCC--CCCCch
Q 046865          229 LCTG--KPVGSD  238 (369)
Q Consensus       229 ~a~G--~~p~~~  238 (369)
                      +|+|  ..|+.+
T Consensus       167 vAtG~~~~P~~P  178 (461)
T PLN02172        167 VCNGHYTEPNVA  178 (461)
T ss_pred             EeccCCCCCcCC
Confidence            9999  456543

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.36  E-value=2.3e-06  Score=78.81  Aligned_cols=100  Identities=20%  Similarity=0.183  Sum_probs=76.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-c----------CCcchHHHHHHHHHhCC-cEEEeCceee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-F----------IGPKAGDKTLDWLISKK-VDVKLGQRVN  203 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~----------~~~~~~~~~~~~l~~~g-v~i~~~~~v~  203 (369)
                      .+++||+|||+.|++++..|....++.+|++|++.+..+- .          .+.++...+++.+++.+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            5789999999999999999986322588999999875431 1          13456667788888665 998887 466


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .|+.++  .+|++.++.++++|.+|+++|..+++.
T Consensus        82 ~ID~~~--k~V~~~~~~~i~YD~LVvalGs~~~~f  114 (405)
T COG1252          82 DIDRDA--KKVTLADLGEISYDYLVVALGSETNYF  114 (405)
T ss_pred             EEcccC--CEEEeCCCccccccEEEEecCCcCCcC
Confidence            676544  467777777899999999999998764

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.36  E-value=3.5e-06  Score=82.72  Aligned_cols=57  Identities=16%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEc--CCCc-EEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLT--STGD-TIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~--~~g~-~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+++. +++++.++++.+++.+++.+.+++  .+|+ ++.+|.||.|.|....
T Consensus       126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~  186 (547)
T PRK08132        126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP  186 (547)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence            4455666667664 799999999999887666555543  3454 6999999999998654

>PRK07236 hypothetical protein; Provisional

Probab=98.36  E-value=3.5e-06  Score=79.02  Aligned_cols=98  Identities=15%  Similarity=0.070  Sum_probs=71.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc------CCcchHHHH------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGPKAGDKT------------------------  185 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~------~~~~~~~~~------------------------  185 (369)
                      ..+|+|||||+.|+.+|..|++  .|.+|+++++.+.....      +.+...+.+                        
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   83 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD   83 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence            5789999999999999999985  48999999987643221      111111111                        


Q ss_pred             -------------------HHHHHh--CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          186 -------------------LDWLIS--KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       186 -------------------~~~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                                         .+.|.+  .+++++.+++++.++.+++.+.+++++|+++.+|.||.|-|...
T Consensus        84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S  154 (386)
T PRK07236         84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS  154 (386)
T ss_pred             CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence                               112211  13568899999998877777888889999999999999999754

>PLN02697 lycopene epsilon cyclase

Probab=98.35  E-value=2.5e-06  Score=82.29  Aligned_cols=103  Identities=24%  Similarity=0.322  Sum_probs=61.7

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc---c-cc-----ccccCCccc--------------ccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW---A-SL-----RAMVEPSFG--------------ERS   66 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~---~-~~-----~~~~~~~~~--------------~~~   66 (369)
                      ...+||+|||||+||+++|..|+ .|++|+|||+...+..++   . .+     ...+...+.              ...
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~  185 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA  185 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence            34689999999999999999986 599999999864332111   0 00     000000000              000


Q ss_pred             e--eccccc---------cccceEEEeeeeeeec--c--e-EEecCCeEEeccEEEEccCCCC
Q 046865           67 V--INHTDY---------LVNGRIVASPAINITE--N--E-VLTAEGRRVVYDYLVIATGHKD  113 (369)
Q Consensus        67 ~--~~~~~~---------~~~~~~~~~~~~~~~~--~--~-v~~~~g~~~~~d~lviAtG~~~  113 (369)
                      +  +....+         ..++++....+..+..  .  . +.+.++.++.++.+|.|+|...
T Consensus       186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            0  000000         0156777777777642  2  2 3456778899999999999864

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.33  E-value=3.6e-07  Score=75.38  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ..||+||||||+||+||++|+ +|.+|+++|++-++|.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG   67 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG   67 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC
Confidence            469999999999999999997 5999999999988763

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.32  E-value=3.7e-06  Score=79.73  Aligned_cols=101  Identities=10%  Similarity=0.034  Sum_probs=72.1

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--ccC---------CcchHHHHHHHHHhCCcEEEeCceee
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EFI---------GPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~~~---------~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      ..++++|||||+.|+.+|..|.  ..+.+|++|++.+.+.  +.+         ..++...+.+.++..+++++.+ +|+
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~--~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~   85 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLD--PKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVY   85 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhC--cCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEE
Confidence            4568999999999999998885  3467999999887542  111         1233444566677778888765 788


Q ss_pred             eccCCCCCeEEEc--------CCCcEEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLT--------STGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~--------~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .|+.+++.+.+..        .+|+++++|.+|+|||..|+..
T Consensus        86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~  128 (424)
T PTZ00318         86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF  128 (424)
T ss_pred             EEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence            8876655444421        4566899999999999987643

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.32  E-value=1.2e-06  Score=78.78  Aligned_cols=35  Identities=34%  Similarity=0.444  Sum_probs=31.3

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      +||+|||||++|+++|+.|+ .|.+|+|||+.+...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~   36 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR   36 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            69999999999999999997 599999999987543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.32  E-value=1.9e-05  Score=77.14  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=33.1

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ...+||||||+|.|||+||.+++ .|.+|+||||....+
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~   52 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD   52 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence            45789999999999999999986 589999999987543

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.31  E-value=4.8e-07  Score=75.05  Aligned_cols=38  Identities=26%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ..+||+||||||+||+||+.|+ .|++|+++|++..+|.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG   54 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG   54 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            4689999999999999999997 4999999999887663

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.30  E-value=3.9e-06  Score=83.13  Aligned_cols=57  Identities=12%  Similarity=-0.129  Sum_probs=43.3

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCC--CCCe-EEEc---CCCc--EEeccEEEEcCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSD-TYLT---STGD--TIKADCHFLCTGKP  234 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~-~v~~---~~g~--~i~~d~vi~a~G~~  234 (369)
                      +..+...+.+.+++.|++++.++.|..+..+  ++.+ .++.   .+++  ++.+|.||+|+|..
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw  295 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF  295 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence            4578888889999999999999999988654  2332 2332   2343  68999999999975

>PRK07538 hypothetical protein; Provisional

Probab=98.30  E-value=4.5e-06  Score=78.99  Aligned_cols=56  Identities=14%  Similarity=0.032  Sum_probs=39.4

Q ss_pred             chHHHHHHHHHh-CC-cEEEeCceeeeccCCCCCeEEEcCCC-----cEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLIS-KK-VDVKLGQRVNLDSVSEGSDTYLTSTG-----DTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~-~g-v~i~~~~~v~~i~~~~~~~~v~~~~g-----~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+.+ .| ++++.+++++.++.+++.+.+.+.++     +++++|+||-|.|...
T Consensus       103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S  165 (413)
T PRK07538        103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS  165 (413)
T ss_pred             HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence            455666666644 36 57999999999876555544544332     4899999999999753

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.28  E-value=5.3e-06  Score=73.16  Aligned_cols=43  Identities=26%  Similarity=0.360  Sum_probs=37.8

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCCcccccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASL   54 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~~~~~~~   54 (369)
                      ..++|.|||+|++||+||+.|++..+|||+|.+++.|.....+
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv   49 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTV   49 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCcccee
Confidence            4579999999999999999999999999999999988654433

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.28  E-value=3.5e-06  Score=78.26  Aligned_cols=99  Identities=21%  Similarity=0.381  Sum_probs=60.0

Q ss_pred             eEEEECCChHHHHHHHHccc---CCcEEEEcCCCCcccc--cccccc------------ccCCcccccc-----------
Q 046865           15 RVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEIT--WASLRA------------MVEPSFGERS-----------   66 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~--~~~~~~------------~~~~~~~~~~-----------   66 (369)
                      ||+|||||+||+++|.+|++   |++|+|+|+.+..+..  |.....            .+...+..-.           
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            79999999999999999863   8999999998754321  111000            0000000000           


Q ss_pred             ----eecccccc----c--cc-eEEEeeeeeeecceEEecCCeEEeccEEEEccCCCC
Q 046865           67 ----VINHTDYL----V--NG-RIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD  113 (369)
Q Consensus        67 ----~~~~~~~~----~--~~-~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~  113 (369)
                          .+...++.    .  +. -+...++..++.+.+.+.+|+++.+|.||-|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence                00000000    0  11 122456667776667778889999999999999774

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.26  E-value=2.3e-05  Score=72.14  Aligned_cols=42  Identities=26%  Similarity=0.400  Sum_probs=35.3

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCCCcccc
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEIT   50 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~~~~~~   50 (369)
                      +.....+|||||||.|||+||.+|- . ..+++|+|..+.+|+.
T Consensus        17 ~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR   60 (498)
T KOG0685|consen   17 KARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR   60 (498)
T ss_pred             hccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence            3445679999999999999999875 4 5799999999998854

>PLN02487 zeta-carotene desaturase

Probab=98.25  E-value=1.3e-05  Score=78.14  Aligned_cols=55  Identities=9%  Similarity=0.084  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCC--CC----eEEEc---CCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GS----DTYLT---STGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~----~~v~~---~~g~~i~~d~vi~a~G~~  234 (369)
                      .+.+.+.+.++++|++|++++.|++++.++  ++    ..+++   .+++.+.+|.||+|++..
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            588899999999999999999999987652  21    23444   234578999999999864

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.24  E-value=8.6e-06  Score=73.16  Aligned_cols=96  Identities=19%  Similarity=0.201  Sum_probs=72.9

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------------------------c--
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------------------F--  176 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------------------------------~--  176 (369)
                      +|+|||+|+.|+-+|..|++  .+.+|+++++.+....                                       .  
T Consensus         2 dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIP   79 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEec
Confidence            58999999999999999984  4899999998753210                                       0  


Q ss_pred             --------C-CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC-CcEEeccEEEEcCCCCC
Q 046865          177 --------I-GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST-GDTIKADCHFLCTGKPV  235 (369)
Q Consensus       177 --------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~d~vi~a~G~~p  235 (369)
                              + ..++.+.+.+.+++.|++++.++++..+..+++.+.+.+.+ +.++++|.||.|+|...
T Consensus        80 ~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        80 IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence                    0 11355667777888899999999999887666655555443 45899999999999863

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.23  E-value=1.3e-06  Score=73.84  Aligned_cols=100  Identities=28%  Similarity=0.342  Sum_probs=70.2

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---cC-----------CcchH--H--HHHHHHHhCCcEEEeC
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FI-----------GPKAG--D--KTLDWLISKKVDVKLG  199 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---~~-----------~~~~~--~--~~~~~l~~~gv~i~~~  199 (369)
                      +++|||||+.|+.+|..|.  .++.+++++++.+....   ..           .....  .  .+.+.+...+++++.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~--~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   78 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELA--RPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN   78 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHH--HTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred             CEEEEecHHHHHHHHHHHh--cCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence            5899999999999999998  35999999977653210   00           00111  1  3444556789999999


Q ss_pred             ceeeeccCCCCC-----eEE---EcCCCcEEeccEEEEcCCCCCCchh
Q 046865          200 QRVNLDSVSEGS-----DTY---LTSTGDTIKADCHFLCTGKPVGSDW  239 (369)
Q Consensus       200 ~~v~~i~~~~~~-----~~v---~~~~g~~i~~d~vi~a~G~~p~~~~  239 (369)
                      +++.++......     ..+   ...++.++.+|.+|+|+|..|+.+.
T Consensus        79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~  126 (201)
T PF07992_consen   79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN  126 (201)
T ss_dssp             HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred             cccccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence            998888765542     122   3455678999999999998876553

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.23  E-value=1.2e-06  Score=83.39  Aligned_cols=41  Identities=37%  Similarity=0.511  Sum_probs=35.2

Q ss_pred             ccccCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865            6 QQQSEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus         6 ~~~~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +.++..+++||+||||||||++||..|+ +|++|+|+|+...
T Consensus        32 ~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            3446677899999999999999999987 5999999998753

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.22  E-value=4.6e-06  Score=80.01  Aligned_cols=54  Identities=15%  Similarity=0.115  Sum_probs=39.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+.+.+.+.+++.||+++.+ .+..+..+++.+ .+.. +++.+.++.||+|||-.
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~  174 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGF  174 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcC
Confidence            467888888888999999876 666665444433 2333 56689999999999963

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.20  E-value=1.9e-05  Score=77.80  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=41.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-E---EEcCCCc--EEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-T---YLTSTGD--TIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~---v~~~~g~--~i~~d~vi~a~G~  233 (369)
                      ..+...+.+.+++.||++++++.+.++..+++.+ .   +...+|+  .+.++.||+|||-
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG  195 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGG  195 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence            4677788888888999999999999876544422 1   2334554  5899999999986

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=4.9e-05  Score=68.20  Aligned_cols=98  Identities=21%  Similarity=0.257  Sum_probs=71.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCccc-----------ccc-----CCcchHHHHHHHHHhCCcEEEeC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRL-----------LEF-----IGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~-----------l~~-----~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      -.++|||+||.|+-.|-++.+  .+.+ +.+++....-           .|.     ..+++.+.+++..+..++++.. 
T Consensus         4 ~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-   80 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-   80 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-
Confidence            468999999999999998874  3666 4455443111           122     2356777788888888999988 


Q ss_pred             ceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..|..++..++.+.+++.+++ ++++.||+|||..+...
T Consensus        81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            567666654446788888886 99999999999976544

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.20  E-value=2.3e-05  Score=69.03  Aligned_cols=38  Identities=29%  Similarity=0.418  Sum_probs=33.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-----cCCcEEEEcCCCCccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEI   49 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-----~g~~V~lie~~~~~~~   49 (369)
                      .+.||||||||-.|.+.|+.|+     .|.+|+++|+++.+.-
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq  127 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ  127 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence            3789999999999999999885     2799999999987653

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.19  E-value=2.5e-06  Score=81.31  Aligned_cols=55  Identities=22%  Similarity=0.166  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+..+++||+++.++ |..+..++++  ..|++.+|+++++|++|=|+|++.
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            567788888899999999986 5555443332  467888999999999999999853

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK06834 hypothetical protein; Provisional

Probab=98.19  E-value=1.3e-05  Score=77.28  Aligned_cols=98  Identities=24%  Similarity=0.339  Sum_probs=74.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---c--------------------------------c-----
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---E--------------------------------F-----  176 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~--------------------------------~-----  176 (369)
                      ..|+|||+|++|+-+|..|++  .|.+|+++++.+...   +                                .     
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   81 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR   81 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence            479999999999999999985  488999998753210   0                                0     


Q ss_pred             -----CC-----------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          177 -----IG-----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       177 -----~~-----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                           ++           ..+.+.+.+.+++.|++++.+++++.++.+++.+.+++.+|+++.+|.||.|.|..+.
T Consensus        82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834         82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence                 00           1122345566677899999999999998777777788878889999999999998654

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.19  E-value=5.7e-05  Score=75.06  Aligned_cols=36  Identities=28%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~   47 (369)
                      ..+||||||+|.||++||..++ .|.+|+||||....
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            4689999999999999999886 58999999998643

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.18  E-value=5.5e-06  Score=81.63  Aligned_cols=56  Identities=14%  Similarity=0.030  Sum_probs=41.0

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCC----CC-eEEE---cCCCc--EEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE----GS-DTYL---TSTGD--TIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~----~~-~~v~---~~~g~--~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+++.||+++.++.+.++..++    +. ..+.   ..+|+  .+.++.||+|||-.
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  205 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS  205 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence            4577788888888999999999999876443    32 2222   24554  57899999999863

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.17  E-value=3.3e-06  Score=80.15  Aligned_cols=57  Identities=12%  Similarity=-0.001  Sum_probs=44.0

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC---Cc--EEeccEEEEcCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST---GD--TIKADCHFLCTGKP  234 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~d~vi~a~G~~  234 (369)
                      |.++.-.......++|-++++.++|+.+..+++...|...|   |+  ++.++.||.|+|..
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW  224 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPW  224 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCcc
Confidence            34677777788889999999999999998777633444433   33  68999999999976

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.17  E-value=5.2e-06  Score=79.57  Aligned_cols=90  Identities=19%  Similarity=0.291  Sum_probs=68.8

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------cc--CCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      ..+++++|||+|+.|+++|..|.+  .+.+|+++++.+.+.       +.  .+.++.....+.+++.||++++++.+..
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  215 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR  215 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC
Confidence            346899999999999999999984  489999999887652       21  3456677777888999999999987631


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                              .+.+.+. .+.+|.||+|||..
T Consensus       216 --------~v~~~~~-~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 --------DITLDEL-RAGYDAVFIGTGAG  236 (457)
T ss_pred             --------ccCHHHH-HhhCCEEEEccCCC
Confidence                    1222223 37899999999985

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.16  E-value=8.1e-06  Score=75.51  Aligned_cols=99  Identities=18%  Similarity=0.128  Sum_probs=67.8

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------CCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      ..+++++|||+|+.|+++|..|.+  .+.+|+++++.+.+...         .+.+......+.+.+.|++++.++.+..
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~   93 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCC   93 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEee
Confidence            457899999999999999999984  48999999998765421         1223334455667777999999988865


Q ss_pred             ccC----CCCCeEEEc--CCCcEEeccEEEEcCCCC
Q 046865          205 DSV----SEGSDTYLT--STGDTIKADCHFLCTGKP  234 (369)
Q Consensus       205 i~~----~~~~~~v~~--~~g~~i~~d~vi~a~G~~  234 (369)
                      +..    +.+......  .++..+.+|.+|+|||..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~  129 (352)
T PRK12770         94 GEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW  129 (352)
T ss_pred             ccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence            432    111111111  111247899999999984

>PRK12831 putative oxidoreductase; Provisional

Probab=98.16  E-value=1.3e-05  Score=76.85  Aligned_cols=93  Identities=18%  Similarity=0.217  Sum_probs=67.6

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------cc--CCcc-hHHHHHHHHHhCCcEEEeCceee
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGPK-AGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~~--~~~~-~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      ...++++|||+|+.|+.+|..|++  .|.+|+++++.+.+.       |.  ++.+ +.....+.+++.||++++++.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~  215 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG  215 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC
Confidence            346899999999999999999985  489999999866431       11  2223 66666778889999999998663


Q ss_pred             eccCCCCCeEEEcCCC-cEEeccEEEEcCCC-CCC
Q 046865          204 LDSVSEGSDTYLTSTG-DTIKADCHFLCTGK-PVG  236 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g-~~i~~d~vi~a~G~-~p~  236 (369)
                      .        .+.+.+. +++.+|.||+|||. .|.
T Consensus       216 ~--------~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        216 K--------TVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             C--------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence            1        1222222 34579999999997 454

>PRK10262 thioredoxin reductase; Provisional

Probab=98.15  E-value=2.2e-05  Score=71.63  Aligned_cols=100  Identities=17%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc---cc--------cccC-----CcchHHHHHHHHHhCCcEEEe
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS---RL--------LEFI-----GPKAGDKTLDWLISKKVDVKL  198 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~---~~--------l~~~-----~~~~~~~~~~~l~~~gv~i~~  198 (369)
                      ..++++|||+|+.|+.+|..+.++  +.++++++...   .+        +|..     .+.+.+.+.+.....++++..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~--g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF   82 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEe
Confidence            457899999999999999998853  77888886421   11        0111     123466667777778888877


Q ss_pred             CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      + .+..++..++...+..+++ ++.+|.||+|||..|+.+
T Consensus        83 ~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~~~  120 (321)
T PRK10262         83 D-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARYL  120 (321)
T ss_pred             e-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCCCC
Confidence            6 4555655555555554433 789999999999988643

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.15  E-value=6.8e-06  Score=77.54  Aligned_cols=99  Identities=17%  Similarity=0.265  Sum_probs=63.7

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINIT   88 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   88 (369)
                      ..+.+++|||||+.|+..|..++ -|.+|||||+.+.+..       ..++++.......+.+  .++++.... +..+.
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-------~~D~ei~~~~~~~l~~--~gv~i~~~~~v~~~~  241 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-------GEDPEISKELTKQLEK--GGVKILLNTKVTAVE  241 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-------cCCHHHHHHHHHHHHh--CCeEEEccceEEEEE
Confidence            35678999999999999998886 4999999999987541       1122221111111111  234444332 22332


Q ss_pred             cc----eEEecCCe--EEeccEEEEccCCCCCCCCC
Q 046865           89 EN----EVLTAEGR--RVVYDYLVIATGHKDPVPKT  118 (369)
Q Consensus        89 ~~----~v~~~~g~--~~~~d~lviAtG~~~~~p~~  118 (369)
                      ..    .+.++++.  ++.+|++++|+|.+|+..++
T Consensus       242 ~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~L  277 (454)
T COG1249         242 KKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGL  277 (454)
T ss_pred             ecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCC
Confidence            21    35555665  68899999999999998865

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.14  E-value=2.7e-06  Score=81.34  Aligned_cols=43  Identities=37%  Similarity=0.612  Sum_probs=37.9

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      ...++++|||||||.|||+||+.|. .|.+|+|+|.++.+|+..
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI   54 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI   54 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence            4556789999999999999999997 599999999999988543

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.14  E-value=2.6e-05  Score=68.03  Aligned_cols=56  Identities=9%  Similarity=-0.029  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCC-----CeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-----SDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-----~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+...+-+.++..|-++++|-++..+.....     .+.|.-..++++++..++-|+|...
T Consensus       197 ~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s  257 (453)
T KOG2665|consen  197 SVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS  257 (453)
T ss_pred             HHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence            3455566668899999999999988875443     2344444568999999999999853

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.14  E-value=8.8e-06  Score=65.85  Aligned_cols=35  Identities=37%  Similarity=0.595  Sum_probs=28.8

Q ss_pred             ceEEEeeeeeeecc----eEEecCCeEEeccEEEEccCC
Q 046865           77 GRIVASPAINITEN----EVLTAEGRRVVYDYLVIATGH  111 (369)
Q Consensus        77 ~~~~~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~  111 (369)
                      ++++..+++.+...    .+.+.+|..+.+|++|+|||.
T Consensus       117 v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  117 VRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             EEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            45677788888654    677889999999999999996

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.13  E-value=1.8e-05  Score=77.55  Aligned_cols=97  Identities=19%  Similarity=0.182  Sum_probs=72.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------------ccC----CcchHHHHHHHHHhCCcEEEeCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------EFI----GPKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------------~~~----~~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      -.++|||||+.|+.+|..+++  .+.+|+++++.. +.            +..    .+++.+.+++.+++.|++++ ++
T Consensus         5 yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~   80 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QA   80 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-cc
Confidence            479999999999999999884  489999999753 21            111    13566777778888899986 56


Q ss_pred             eeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          201 RVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .|..++.+++...+.+.++ ++.+|.+|+|||.+|...
T Consensus        81 ~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        81 EVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            7777765444455666555 689999999999987653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.13  E-value=8.8e-06  Score=83.90  Aligned_cols=92  Identities=20%  Similarity=0.043  Sum_probs=71.7

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++|+|||+||.|+.+|..|++  .|.+|+++++.+++..         .++.++.+...+.+++.||++++|+.+.  
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG--  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG--  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec--
Confidence            46899999999999999999984  5999999999875432         2345666777788899999999997653  


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCC-CC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP-VG  236 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~-p~  236 (369)
                            ..+++++.....+|.|++|||.. |.
T Consensus       381 ------~dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        381 ------KTATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence                  12555555556799999999984 53

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.12  E-value=1.7e-05  Score=73.21  Aligned_cols=66  Identities=11%  Similarity=0.122  Sum_probs=49.8

Q ss_pred             chHHHHHHHHHhC-CcEEEeCceeeeccCCCCC-eEEEc---C--CCcEEeccEEEEcCCCCCCchhhcccccC
Q 046865          180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGS-DTYLT---S--TGDTIKADCHFLCTGKPVGSDWLKDTILK  246 (369)
Q Consensus       180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~-~~v~~---~--~g~~i~~d~vi~a~G~~p~~~~l~~~~~~  246 (369)
                      .+.+.+.+.+++. |++++++++|+.++..+++ ..|..   .  +..++.+++|++.+|-. ...+++..+++
T Consensus       182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~-aL~LLqksgi~  254 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG-ALPLLQKSGIP  254 (488)
T ss_pred             HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH-hHHHHHHcCCh
Confidence            5667777778777 9999999999999876554 55543   2  23579999999999976 46677776654

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.12  E-value=1.9e-05  Score=77.38  Aligned_cols=55  Identities=18%  Similarity=0.187  Sum_probs=41.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-e-EEE---cCCCc--EEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-D-TYL---TSTGD--TIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~-~v~---~~~g~--~i~~d~vi~a~G~  233 (369)
                      ..+...+.+.+++.||++++++.+.++..+++. + .+.   ..+|+  .+.++.||+|||-
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  195 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG  195 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence            467778888888899999999999987655443 2 222   24564  5889999999986

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.11  E-value=7e-06  Score=78.39  Aligned_cols=91  Identities=19%  Similarity=0.181  Sum_probs=67.7

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++++|||+|+.|+++|..|++  .+.+|+++++.+.+.       +  .+++++.....+.+++.||++++++.+.. 
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-  208 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK-  208 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC-
Confidence            35789999999999999999984  489999999876542       2  23456666677788899999999985521 


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCC-CCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGK-PVG  236 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~-~p~  236 (369)
                             .+.+.+. ...+|.||+|||. .|.
T Consensus       209 -------~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       209 -------TATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                   1333332 3468999999997 454

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.11  E-value=3.2e-05  Score=76.88  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~   47 (369)
                      ..+||||||||.|||+||.+++ .|.+|+||||+...
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            3579999999999999999986 59999999986654

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.11  E-value=1e-05  Score=77.20  Aligned_cols=92  Identities=12%  Similarity=0.065  Sum_probs=66.9

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc--------cC--CcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--------FI--GPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~--------~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      .+++|+|||+||.|+.+|..|+++..+.+|+++++.+.+..        ..  ...+...+.+.++..+|+++.|..+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46789999999999999999985446999999999886532        11  112344566677788999999876631


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                              .+.+++- ...+|.||+|+|..+
T Consensus       105 --------dvtl~~L-~~~yDaVIlAtGa~~  126 (491)
T PLN02852        105 --------DVSLSEL-RDLYHVVVLAYGAES  126 (491)
T ss_pred             --------cccHHHH-hhhCCEEEEecCCCC
Confidence                    1233332 246999999999875

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.10  E-value=1.8e-05  Score=81.00  Aligned_cols=90  Identities=16%  Similarity=0.183  Sum_probs=66.9

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------cc--CCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++|+|||||+.|+.+|..|++  .|.+|+++++.+.+.       |.  .+.+....-.+.+++.||++++++.+ .+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di  614 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL  614 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE
Confidence            35789999999999999999985  489999999876542       21  23345555567788899999999876 12


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                               .+.+.....+|.||+|||.++.
T Consensus       615 ---------~le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        615 ---------TVEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             ---------EhhhheeccCCEEEECcCCCCC
Confidence                     2223334568999999999753

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.07  E-value=3.5e-05  Score=75.94  Aligned_cols=55  Identities=15%  Similarity=-0.033  Sum_probs=40.5

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EE---EcCCCc--EEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TY---LTSTGD--TIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~i~~d~vi~a~G~  233 (369)
                      ..+...+.+.+++.||+++.++.+.++..+++.+ .+   ...+|+  .+.++.||+|||-
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG  189 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG  189 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence            3566777787888899999999999886554432 22   224564  5889999999994

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR00551 nadB L-aspartate oxidase

Probab=98.05  E-value=1.3e-05  Score=77.49  Aligned_cols=56  Identities=14%  Similarity=0.105  Sum_probs=40.9

Q ss_pred             cchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeE-EEcCC-C--cEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDT-YLTST-G--DTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~-v~~~~-g--~~i~~d~vi~a~G~~  234 (369)
                      ..+.+.+.+.+++ .||++++++.+.++..+++.+. +...+ +  ..+.++.||+|||-.
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~  188 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGA  188 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence            4677788888877 6999999999998875554332 33322 3  368999999999863

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.04  E-value=3.8e-05  Score=73.40  Aligned_cols=94  Identities=21%  Similarity=0.260  Sum_probs=65.9

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------------------------C----C--------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------I----G--------  178 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------------------------~----~--------  178 (369)
                      .++|||+|+.|++.|..+++  .|.+|+++++. .+...                           +    .        
T Consensus         4 DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (446)
T TIGR01424         4 DLFVIGAGSGGVRAARLAAN--HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK   80 (446)
T ss_pred             cEEEECCCHHHHHHHHHHHh--CCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence            58999999999999999884  49999999974 21100                           0    0        


Q ss_pred             ---------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          179 ---------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       179 ---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                               .++.+.+++.+++.||+++.+ ++..+.  .+.+.+. .+|+++++|.+|+|||.+|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~--~~~v~v~-~~g~~~~~d~lIiATGs~p~~p  145 (446)
T TIGR01424        81 LLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVG--PNTVEVL-QDGTTYTAKKILIAVGGRPQKP  145 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec--CCEEEEe-cCCeEEEcCEEEEecCCcCCCC
Confidence                     023344556677889999887 444443  2234443 4577899999999999998654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.00  E-value=8.8e-05  Score=72.98  Aligned_cols=55  Identities=20%  Similarity=0.050  Sum_probs=38.8

Q ss_pred             cchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeE----EEcCCCc--EEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDT----YLTSTGD--TIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~----v~~~~g~--~i~~d~vi~a~G~  233 (369)
                      ..+...+.+.+.+ .+|+++.++.+.++..+++.+.    +...+|+  .+.++.||+|||-
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG  193 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence            3566677766655 4899999999998765544322    2234663  6889999999985

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.97  E-value=7.3e-05  Score=71.85  Aligned_cols=97  Identities=19%  Similarity=0.212  Sum_probs=67.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc------CCc-------------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP-------------------------------  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~------~~~-------------------------------  179 (369)
                      -+++|||+|+.|+.+|..+++  .|.+|+++++.+.+...      .+.                               
T Consensus         6 yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA   83 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence            469999999999999999985  48999999986443110      000                               


Q ss_pred             c-----------hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCch
Q 046865          180 K-----------AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       180 ~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~  238 (369)
                      +           ..+.+.+.+++.||+++.++. ..+  +.+.+.+...+|+  ++.+|.+|+|||.+|..+
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p  152 (461)
T PRK05249         84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRA-RFV--DPHTVEVECPDGEVETLTADKIVIATGSRPYRP  152 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence            0           112233456678999998753 222  2345566666664  799999999999988643

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.97  E-value=5.7e-05  Score=72.08  Aligned_cols=97  Identities=21%  Similarity=0.206  Sum_probs=64.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CC--------------cch-----------HHH
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IG--------------PKA-----------GDK  184 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~--------------~~~-----------~~~  184 (369)
                      -+++|||+|+.|+++|..+++  .+.+|+++++.+..+..       .+              +++           ...
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK   81 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999984  58999999987532110       01              011           111


Q ss_pred             HHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC-CcEEeccEEEEcCCCCCCch
Q 046865          185 TLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST-GDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       185 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..+.+++.||+++.++.. .+  ++..+.+...+ ..++.+|.+|+|||.+|+.+
T Consensus        82 ~~~~~~~~gV~~~~g~~~-~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p  133 (438)
T PRK07251         82 NYAMLAGSGVDLYDAEAH-FV--SNKVIEVQAGDEKIELTAETIVINTGAVSNVL  133 (438)
T ss_pred             HHHHHHhCCCEEEEEEEE-Ec--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence            234567789999887642 22  23334444322 24799999999999988653

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.96  E-value=8.6e-05  Score=71.35  Aligned_cols=97  Identities=26%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc--------ccc--------------------cCC----------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR--------LLE--------------------FIG----------  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~--------~l~--------------------~~~----------  178 (369)
                      ++++|||+|+.|+++|..+++  .+.+|+++++..-        ..|                    ...          
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   79 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD   79 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence            479999999999999999885  4899999997640        000                    000          


Q ss_pred             c-c-----------hHHHHHHHHHhCCcEEEeCceeeecc--CCCCCeEEEcCCCc--EEeccEEEEcCCCCCC
Q 046865          179 P-K-----------AGDKTLDWLISKKVDVKLGQRVNLDS--VSEGSDTYLTSTGD--TIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 ~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~--~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~  236 (369)
                      . .           ..+.+.+.+++.||+++.++.. .++  .+.+.+.+.+.+|+  ++.+|.+|+|||.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~-~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~  152 (466)
T PRK07845         80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGR-LIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR  152 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE-EeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence            0 0           0223445677789999988543 222  33455667777775  7999999999999986

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.94  E-value=2.3e-05  Score=75.21  Aligned_cols=91  Identities=15%  Similarity=0.227  Sum_probs=68.0

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++++|||+|+.|+.+|..++.  .+.+|+++++.+.+.       |  .++.++.....+.+++.|++++.++.+...
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence            45789999999999999999884  489999999887542       2  234556666778889999999999877321


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                              +...+ ....+|.||+|||..+.
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                    11111 12469999999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK07208 hypothetical protein; Provisional

Probab=97.93  E-value=9.7e-06  Score=78.32  Aligned_cols=55  Identities=15%  Similarity=0.006  Sum_probs=42.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eE-EEc--CCCc--EEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DT-YLT--STGD--TIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~-v~~--~~g~--~i~~d~vi~a~G~  233 (369)
                      ..+.+.+.+.+++.|++|+++++|+++..+++. +. +..  .+|+  ++.+|.||+++..
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~  278 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL  278 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence            367888889999999999999999999876554 22 222  2453  6889999999764

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.93  E-value=6.8e-05  Score=69.68  Aligned_cols=94  Identities=20%  Similarity=0.260  Sum_probs=64.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-----cCCcchH------------------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----FIGPKAG------------------------------  182 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-----~~~~~~~------------------------------  182 (369)
                      .++|||+|+.|+.+|..|.+..++.+|.++++.+.+.+     ....++.                              
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            47999999999999999986556999999999874432     1111111                              


Q ss_pred             --------HHHHHH-HHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          183 --------DKTLDW-LISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       183 --------~~~~~~-l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                              ..+.+. +++.+..++++++|..++  .+.  +++.+|+++++|.||.|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~--v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADG--VDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCE--EEECCCCEEEeeEEEECCCCCC
Confidence                    111122 222244477788888773  233  4447888999999999999775

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.92  E-value=8.2e-06  Score=76.54  Aligned_cols=31  Identities=32%  Similarity=0.545  Sum_probs=29.1

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~   44 (369)
                      |||+||||||||+++|+.|+ .|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            69999999999999999997 59999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.92  E-value=4.8e-05  Score=70.17  Aligned_cols=101  Identities=25%  Similarity=0.406  Sum_probs=75.8

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-----------CCcchHHHHHHHHHhCCcEEEeCcee
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-----------~~~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      ...++++|+|+|+.|.-++..+.+..+--+++++.+...+ |.           ....+.....+++++.||++++++.|
T Consensus        72 ~~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v  150 (478)
T KOG1336|consen   72 YAARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-PYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSV  150 (478)
T ss_pred             cccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-cccchhcccceeeccccccccChhhHhhcCceEEEccee
Confidence            3468999999999876666666655555688888865432 21           12344555667899999999999999


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      +.++..  ..++.+.+|++++++.+++|||..|.+
T Consensus       151 ~~~D~~--~K~l~~~~Ge~~kys~LilATGs~~~~  183 (478)
T KOG1336|consen  151 VKADLA--SKTLVLGNGETLKYSKLIIATGSSAKT  183 (478)
T ss_pred             EEeecc--ccEEEeCCCceeecceEEEeecCcccc
Confidence            988654  346888999999999999999996543

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.92  E-value=7.7e-05  Score=61.89  Aligned_cols=164  Identities=18%  Similarity=0.181  Sum_probs=97.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------C-------------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------I-------------------------------  177 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~-------------------------------  177 (369)
                      ...++|+|+||+|+-.|.+|+++  +.+|.+++++-.+...       |                               
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~--g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d  107 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKA--GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD  107 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhC--CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence            46799999999999999999964  9999999987433110       0                               


Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeE-EEc------C-----CCcEEeccEEEEcCCCCCCc-hhhccc
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDT-YLT------S-----TGDTIKADCHFLCTGKPVGS-DWLKDT  243 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~-v~~------~-----~g~~i~~d~vi~a~G~~p~~-~~l~~~  243 (369)
                      ..++...+....-+.|++|+..+.|+++-..++ .+. +..      .     |--.++++.||-+||..... .++...
T Consensus       108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr  187 (262)
T COG1635         108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKR  187 (262)
T ss_pred             HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence            123444455555667899999999987755444 221 111      1     12378999999999985432 222111


Q ss_pred             c--cCCCCCCCC--------cEEeCCceeeccCCCeEEecccCCc--cccchh--HH-HHHHHHHHHHHHHHHhh
Q 046865          244 I--LKDSLDTDG--------MLMVDENLRVKGQKNIFAIGDITDI--REIKQG--FL-AQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       244 ~--~~~~~~~~g--------~i~vd~~l~~~~~~~i~a~GD~~~~--~~~~~~--~~-A~~~g~~~a~~i~~~~~  303 (369)
                      .  ++..+...+        .+.|+...+.  +||+|++|=.++-  ..+..+  .- -.-+|+.+|+-++..++
T Consensus       188 ~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~  260 (262)
T COG1635         188 IPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK  260 (262)
T ss_pred             ccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence            1  111111111        1333334443  8999999976532  111111  11 23578888887775543

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.92  E-value=8.6e-05  Score=71.99  Aligned_cols=136  Identities=16%  Similarity=0.193  Sum_probs=83.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------------------------------C--C----
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------------------------------I--G----  178 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------------------------------~--~----  178 (369)
                      .++|+|||+|++|+-.+..+.+.  |.+++++++.+.+...                               +  +    
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~--g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p   78 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEE--GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP   78 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHT--T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHC--CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence            37899999999999999999864  8999999998654210                               0  0    


Q ss_pred             -----cchHHHHHHHHHhCCc--EEEeCceeeeccCCC-----CCeEEEcCC-Cc--EEeccEEEEcCCCC--CCchhhc
Q 046865          179 -----PKAGDKTLDWLISKKV--DVKLGQRVNLDSVSE-----GSDTYLTST-GD--TIKADCHFLCTGKP--VGSDWLK  241 (369)
Q Consensus       179 -----~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~-----~~~~v~~~~-g~--~i~~d~vi~a~G~~--p~~~~l~  241 (369)
                           .++.++++...+..++  .|.+|++|.+++..+     +...|++.+ |+  +..+|.|++|+|.-  |+.+.-.
T Consensus        79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~  158 (531)
T PF00743_consen   79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS  158 (531)
T ss_dssp             SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred             CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence                 3567778888877776  588999999887533     234565543 42  45689999999974  4433211


Q ss_pred             ccccCCCCCCCCcEEeCCceeec---cCCCeEEecccC
Q 046865          242 DTILKDSLDTDGMLMVDENLRVK---GQKNIFAIGDIT  276 (369)
Q Consensus       242 ~~~~~~~~~~~g~i~vd~~l~~~---~~~~i~a~GD~~  276 (369)
                      ..++. .  -+|.+.-...++..   ..++|-++|-..
T Consensus       159 ~~G~e-~--F~G~i~HS~~yr~~~~f~gKrVlVVG~g~  193 (531)
T PF00743_consen  159 FPGLE-K--FKGEIIHSKDYRDPEPFKGKRVLVVGGGN  193 (531)
T ss_dssp             -CTGG-G--HCSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred             hhhhh-c--CCeeEEccccCcChhhcCCCEEEEEeCCH
Confidence            12221 1  24666655555432   256788888643

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.91  E-value=3.2e-05  Score=74.33  Aligned_cols=96  Identities=17%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeee--
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINIT--   88 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (369)
                      .++|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+..       ...+...........+  .+++++.+ .+..++  
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------~~~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~  240 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-------GEDAEVSKVVAKALKK--KGVKILTNTKVTAVEKN  240 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-------CCCHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence            479999999999999999886 5999999999875431       0111111000000111  24555543 344443  


Q ss_pred             cc--eEEecCC--eEEeccEEEEccCCCCCCCC
Q 046865           89 EN--EVLTAEG--RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        89 ~~--~v~~~~g--~~~~~d~lviAtG~~~~~p~  117 (369)
                      ..  .+...++  .++.+|.+++|+|..|+.+.
T Consensus       241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~  273 (461)
T TIGR01350       241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTEG  273 (461)
T ss_pred             CCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence            22  2333455  57999999999999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.91  E-value=1.2e-05  Score=75.20  Aligned_cols=45  Identities=22%  Similarity=0.254  Sum_probs=37.0

Q ss_pred             CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      +.|+|+..+++|.+|-+.+....   ..|..||-+|+-|.+...++++
T Consensus       352 ~tLEtK~I~GLf~AGQINGTtGY---EEAAaQGliAGiNAal~~~~~~  396 (621)
T COG0445         352 PTLETKKIKGLFFAGQINGTTGY---EEAAAQGLIAGINAALKVQGKE  396 (621)
T ss_pred             cchhhceecceEEcccccCCchh---HHHHhhhHHHHHHHHHHhcCCC
Confidence            46888889999999999876432   4788999999999998877764

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.91  E-value=1e-05  Score=76.73  Aligned_cols=35  Identities=37%  Similarity=0.487  Sum_probs=28.1

Q ss_pred             eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ||||||||+||++||..++ .|.+|+|||+.+.+|.
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG   36 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG   36 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence            8999999999999999886 5999999999998764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.91  E-value=3.1e-05  Score=78.79  Aligned_cols=93  Identities=18%  Similarity=0.217  Sum_probs=68.0

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++++|||+|+.|+..|..|++  .|.+|+++++.+.+.       |  .++.++.+...+.+++.||++++++.+.. 
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~-  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK-  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC-
Confidence            35789999999999999999984  489999999865432       1  12445666666778889999999976521 


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCC-CCCc
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGK-PVGS  237 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~-~p~~  237 (369)
                             .+++++..+..+|.||+|||. .|..
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence                   133333345679999999998 4543

>PRK09897 hypothetical protein; Provisional

Probab=97.90  E-value=0.00012  Score=70.85  Aligned_cols=99  Identities=19%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc----------------------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------------------------------------  176 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~----------------------------------------  176 (369)
                      ++|+|||+|+.|+-++..|.+.....+|++++++..+...                                        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            4799999999999999999764445689999986432110                                        


Q ss_pred             --------------CCcc--hH-------HHHHHHHHhCC--cEEEeCceeeeccCCCCCeEEEcCC-CcEEeccEEEEc
Q 046865          177 --------------IGPK--AG-------DKTLDWLISKK--VDVKLGQRVNLDSVSEGSDTYLTST-GDTIKADCHFLC  230 (369)
Q Consensus       177 --------------~~~~--~~-------~~~~~~l~~~g--v~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~d~vi~a  230 (369)
                                    +.|.  ..       +.+.+.+.+.|  ++++.+++|+.++..++...+.+.+ +..+.+|.||+|
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA  161 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA  161 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence                          0000  11       11223334455  7888899999998776677777755 468999999999


Q ss_pred             CCCCC
Q 046865          231 TGKPV  235 (369)
Q Consensus       231 ~G~~p  235 (369)
                      +|..+
T Consensus       162 tGh~~  166 (534)
T PRK09897        162 TGHVW  166 (534)
T ss_pred             CCCCC
Confidence            99754

>PRK06753 hypothetical protein; Provisional

Probab=97.89  E-value=0.00012  Score=68.22  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=70.2

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-----C------------------------------Cc---
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----I------------------------------GP---  179 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-----~------------------------------~~---  179 (369)
                      +|+|||||+.|+-+|..|++  .|.+|+++++.+.+...     +                              ++   
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~   79 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT   79 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC
Confidence            68999999999999999985  48999999987532100     0                              00   


Q ss_pred             c---------------hHHHHHHHHHh--CCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 K---------------AGDKTLDWLIS--KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~---------------~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .               -...+.+.|.+  .+.++++++++++++.+++.+.+++++|+++.+|.||-|.|....
T Consensus        80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             EEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence            0               01123333322  246789999999998777778888889999999999999997643

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.89  E-value=9.4e-05  Score=70.64  Aligned_cols=97  Identities=22%  Similarity=0.225  Sum_probs=64.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CC-----------cchH----------HHH---
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IG-----------PKAG----------DKT---  185 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~-----------~~~~----------~~~---  185 (369)
                      -.++|||||+.|+.+|..+++  .+.+|+++++.+..+..       .+           .++.          +.+   
T Consensus         4 yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK   81 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence            379999999999999999985  48999999987532110       00           0111          111   


Q ss_pred             -HHHHHh-CCcEEEeCceeeeccCCCCCeEEEcCCCc-EEeccEEEEcCCCCCCch
Q 046865          186 -LDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLTSTGD-TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       186 -~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~d~vi~a~G~~p~~~  238 (369)
                       .+.+.+ .|++++.++ +..+.  .+.+.+.+.+|. ++.+|.+|+|||.+|..+
T Consensus        82 ~~~~~~~~~gv~~~~g~-~~~i~--~~~~~v~~~~g~~~~~~d~lviATGs~p~~p  134 (441)
T PRK08010         82 NFHNLADMPNIDVIDGQ-AEFIN--NHSLRVHRPEGNLEIHGEKIFINTGAQTVVP  134 (441)
T ss_pred             HHHHHhhcCCcEEEEEE-EEEec--CCEEEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence             122333 389988774 43332  345667766775 699999999999988643

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.87  E-value=1.3e-05  Score=75.17  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=31.1

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .+||+|||||++|+++|..|+ +|++|+|||+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            579999999999999999997 5999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.86  E-value=4e-05  Score=73.67  Aligned_cols=96  Identities=21%  Similarity=0.308  Sum_probs=60.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (369)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...       .++...........  ..+++++.+ .+..++..
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~~~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~  242 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-------EDKEISKLAERALK--KRGIKIKTGAKAKKVEQT  242 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-------CCHHHHHHHHHHHH--HcCCEEEeCCEEEEEEEe
Confidence            468999999999999998886 59999999998764311       11111100000010  124555543 34444422


Q ss_pred             ----eEEecCC---eEEeccEEEEccCCCCCCCC
Q 046865           91 ----EVLTAEG---RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        91 ----~v~~~~g---~~~~~d~lviAtG~~~~~p~  117 (369)
                          .+.+.++   +++.+|.+++|+|.+|+...
T Consensus       243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~  276 (462)
T PRK06416        243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN  276 (462)
T ss_pred             CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence                2344444   67999999999999987654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.86  E-value=0.00014  Score=69.99  Aligned_cols=97  Identities=27%  Similarity=0.281  Sum_probs=66.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------c------------------cC-------Ccc-
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------E------------------FI-------GPK-  180 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------~------------------~~-------~~~-  180 (369)
                      .-+++|||+|+.|+..|..+++  .|.+|.++++.. +.         |                  .+       ..+ 
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   80 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDF   80 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            3479999999999999999985  499999999752 10         0                  00       001 


Q ss_pred             -------------hHHHHHHHHHhCCcEEEeCceeeeccCC-----CCCeEEEcCCC--cEEeccEEEEcCCCCCC
Q 046865          181 -------------AGDKTLDWLISKKVDVKLGQRVNLDSVS-----EGSDTYLTSTG--DTIKADCHFLCTGKPVG  236 (369)
Q Consensus       181 -------------~~~~~~~~l~~~gv~i~~~~~v~~i~~~-----~~~~~v~~~~g--~~i~~d~vi~a~G~~p~  236 (369)
                                   +.+...+.+++.||+++.++- ..+...     ++.+.+.+.+|  +++.+|.+|+|||.+|.
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a-~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~  155 (472)
T PRK05976         81 AKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIG-RILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV  155 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence                         111223456677999999853 334322     22566777776  47999999999999985

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.85  E-value=4.2e-05  Score=73.71  Aligned_cols=89  Identities=18%  Similarity=0.309  Sum_probs=66.8

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++++|||+|+.|+++|..|++  .+.+|+++++.+++.       |  .+++++.....+.+++.||++++++.+.. 
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-  218 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-  218 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-
Confidence            34799999999999999999985  488999999887642       2  13445666667788899999999988741 


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .       +.. +.....+|.|++|||..
T Consensus       219 ~-------~~~-~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       219 D-------ISA-DELKEQFDAVVLAGGAT  239 (485)
T ss_pred             c-------cCH-HHHHhhCCEEEEccCCC
Confidence            1       110 11235799999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.85  E-value=4.6e-05  Score=79.39  Aligned_cols=91  Identities=16%  Similarity=0.211  Sum_probs=67.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------cc--CCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .++|+|||+|+.|+..|..|++  .|.+|+++++.+.+.       |.  .+.++.+...+.+++.||++++++.+..  
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~--  505 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK--  505 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC--
Confidence            4789999999999999999985  489999999876542       21  2456777788889999999999975421  


Q ss_pred             CCCCCeEEEcCCC-cEEeccEEEEcCCCC-CC
Q 046865          207 VSEGSDTYLTSTG-DTIKADCHFLCTGKP-VG  236 (369)
Q Consensus       207 ~~~~~~~v~~~~g-~~i~~d~vi~a~G~~-p~  236 (369)
                          .  ++..+- +...+|.||+|||.. |.
T Consensus       506 ----~--~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        506 ----T--FTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             ----c--cCHHHHhhccCCCEEEEecCCCCCC
Confidence                1  111111 124689999999984 44

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.85  E-value=7.6e-05  Score=72.10  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=64.9

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..++++|+|+|.+|+++|..|.+  .|.+|+++++.+.       +....+.+.+++.||+++++..+.           
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~-----------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT-----------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-----------
Confidence            46789999999999999988874  4899999987642       334456677888999999886442           


Q ss_pred             EcCCCcEEeccEEEEcCCCCCCchhhcc
Q 046865          215 LTSTGDTIKADCHFLCTGKPVGSDWLKD  242 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~p~~~~l~~  242 (369)
                           ....+|.||+++|.+|+.+++..
T Consensus        75 -----~~~~~D~Vv~s~Gi~~~~~~~~~   97 (480)
T PRK01438         75 -----LPEDTDLVVTSPGWRPDAPLLAA   97 (480)
T ss_pred             -----ccCCCCEEEECCCcCCCCHHHHH
Confidence                 12458999999999999886543

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.85  E-value=1.7e-05  Score=67.76  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      .+|+|||+|++|++||+.|+ .|.+|+|+||+.-.+
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvG   37 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVG   37 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcc
Confidence            47999999999999999997 599999999987665

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=1.6e-05  Score=74.32  Aligned_cols=41  Identities=34%  Similarity=0.401  Sum_probs=36.0

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL   54 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~   54 (369)
                      ++|+|+|||.|||+||+.|+ .|++|+|+|.++.+|+.....
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~   42 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW   42 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence            58999999999999999997 699999999999988654443

>PRK11445 putative oxidoreductase; Provisional

Probab=97.83  E-value=1.7e-05  Score=73.40  Aligned_cols=34  Identities=38%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             cceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~   46 (369)
                      ++||+||||||||+++|..|++.++|+|+|+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence            4799999999999999999975599999998864

>PLN02661 Putative thiazole synthesis

Probab=97.83  E-value=0.00035  Score=63.35  Aligned_cols=166  Identities=17%  Similarity=0.101  Sum_probs=94.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------------cCCc---------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------FIGP---------  179 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------------------~~~~---------  179 (369)
                      .-+++|||+|+.|+-+|..+++ .++.+|+++++...+..                           .++.         
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~-~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h  170 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSK-NPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH  170 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHH-cCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence            3579999999999999999974 35889999998653211                           0111         


Q ss_pred             --chHHHHHH-HHHhCCcEEEeCceeeeccCCCCCe-EEEc------CC--C------cEEeccEEEEcCCCCCCch---
Q 046865          180 --KAGDKTLD-WLISKKVDVKLGQRVNLDSVSEGSD-TYLT------ST--G------DTIKADCHFLCTGKPVGSD---  238 (369)
Q Consensus       180 --~~~~~~~~-~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~------~~--g------~~i~~d~vi~a~G~~p~~~---  238 (369)
                        ++...+.+ .+++.||+++.++.+.++..+++.+ .+..      .+  +      ..++++.||+|||......   
T Consensus       171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~  250 (357)
T PLN02661        171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG  250 (357)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence              11123333 3345789999999988876554422 2221      11  1      2689999999999653211   


Q ss_pred             --hhcccccCCCCCCCCcE--------EeCCceeeccCCCeEEecccCCc--cccchh--H-HHHHHHHHHHHHHHHHhh
Q 046865          239 --WLKDTILKDSLDTDGML--------MVDENLRVKGQKNIFAIGDITDI--REIKQG--F-LAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       239 --~l~~~~~~~~~~~~g~i--------~vd~~l~~~~~~~i~a~GD~~~~--~~~~~~--~-~A~~~g~~~a~~i~~~~~  303 (369)
                        ++...++-..+..-..+        .|+..-+.  +|++|++|=.+.-  ..+..+  . .-.-+|+.+|+-|+..++
T Consensus       251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~  328 (357)
T PLN02661        251 VKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG  328 (357)
T ss_pred             hhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence              11111110000001111        12222222  8999999976532  111111  1 224578999999988876


Q ss_pred             C
Q 046865          304 G  304 (369)
Q Consensus       304 g  304 (369)
                      .
T Consensus       329 ~  329 (357)
T PLN02661        329 L  329 (357)
T ss_pred             c
Confidence            3

>PRK07236 hypothetical protein; Provisional

Probab=97.83  E-value=1.8e-05  Score=74.24  Aligned_cols=35  Identities=31%  Similarity=0.445  Sum_probs=31.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +.++|+|||||++|+++|..|+ .|++|+|+|+.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            3589999999999999999997 5999999999864

>PRK06116 glutathione reductase; Validated

Probab=97.83  E-value=0.00013  Score=69.82  Aligned_cols=92  Identities=23%  Similarity=0.278  Sum_probs=63.5

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc----------------------------c--CC---c-----
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------------------------F--IG---P-----  179 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~----------------------------~--~~---~-----  179 (369)
                      .++|||+|+.|+.+|..+++  .|.+|+++++. .+..                            .  .+   +     
T Consensus         6 DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (450)
T PRK06116          6 DLIVIGGGSGGIASANRAAM--YGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA   82 (450)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence            69999999999999999984  48999999975 2200                            0  00   0     


Q ss_pred             -----------chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          180 -----------KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       180 -----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                                 ++.+.+.+.+++.||+++.++ +..+.  ..  ++++ +|+++++|.+|+|||.+|..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~--~~--~v~~-~g~~~~~d~lViATGs~p~~p  146 (450)
T PRK06116         83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD--AH--TVEV-NGERYTADHILIATGGRPSIP  146 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--CC--EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence                       011223344667899999885 33332  22  3444 677899999999999998654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.82  E-value=9.9e-05  Score=71.04  Aligned_cols=95  Identities=20%  Similarity=0.177  Sum_probs=64.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc------CCc-------------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP-------------------------------  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~------~~~-------------------------------  179 (369)
                      -.++|||+|+.|+..|..+++  .|.+|+++++.+.+...      .+.                               
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID   82 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            479999999999999998884  49999999986433110      000                               


Q ss_pred             chH-----------HHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCC
Q 046865          180 KAG-----------DKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~-----------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~  236 (369)
                      .+.           ..+...+++.||+++.++.. .+  +.+.+.+...+|  .++++|.+|+|||.+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~-~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~  149 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGK-FT--GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec--cCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence            010           11123456679999987533 22  334556666666  47999999999999885

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.81  E-value=1.7e-05  Score=74.54  Aligned_cols=33  Identities=36%  Similarity=0.527  Sum_probs=30.0

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +||+||||||||++||+.|+ .|++|+|+|+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            58999999999999999987 5999999999754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN02576 protoporphyrinogen oxidase

Probab=97.81  E-value=2e-05  Score=76.54  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=34.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCCCcccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEIT   50 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~~~~~~   50 (369)
                      .++||+|||||++||+||++|+ . |.+|+|+|+++.+|+.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr   51 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN   51 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence            4579999999999999999997 4 8999999999988854

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.81  E-value=4.7e-05  Score=72.44  Aligned_cols=95  Identities=22%  Similarity=0.232  Sum_probs=60.1

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (369)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+..+      ...+.........+.  -.+++++. ..+..++..
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~------~~~~~~~~~~~~~l~--~~gV~v~~~~~v~~i~~~  208 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK------LFDEEMNQIVEEELK--KHEINLRLNEEVDSIEGE  208 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc------ccCHHHHHHHHHHHH--HcCCEEEeCCEEEEEecC
Confidence            469999999999999999886 58999999998754211      001111000000000  12456543 344455432


Q ss_pred             --eEEecCCeEEeccEEEEccCCCCCC
Q 046865           91 --EVLTAEGRRVVYDYLVIATGHKDPV  115 (369)
Q Consensus        91 --~v~~~~g~~~~~d~lviAtG~~~~~  115 (369)
                        .+.+.+++++.+|.+++|+|..|..
T Consensus       209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (427)
T TIGR03385       209 ERVKVFTSGGVYQADMVILATGIKPNS  235 (427)
T ss_pred             CCEEEEcCCCEEEeCEEEECCCccCCH
Confidence              2355678889999999999998764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.78  E-value=9e-05  Score=76.24  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=63.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-------c--CCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------F--IGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-------~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .++|+|||||+.|+.+|..|++  .|.+|+++++.+.+..       .  .+.+......+.+.+.||++++++...   
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d---  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD---  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc---
Confidence            4689999999999999999984  4899999998765422       1  233455555567788899999884311   


Q ss_pred             CCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          207 VSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       207 ~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                             +...+.+...+|.||+|||..+
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA~~  633 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGAWK  633 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCCCC
Confidence                   1222233456899999999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07846 mycothione reductase; Reviewed

Probab=97.77  E-value=7.8e-05  Score=71.31  Aligned_cols=96  Identities=16%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (369)
                      ..+++|||||+.|+.+|..|+ .|.+|+|+++.+.+...       .++.... .+....  ..+++++. ..+..++..
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-------~d~~~~~-~l~~l~--~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-------LDDDISE-RFTELA--SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-------cCHHHHH-HHHHHH--hcCeEEEeCCEEEEEEEc
Confidence            479999999999999999886 59999999998754310       1111110 000000  12344432 234444321


Q ss_pred             ----eEEecCCeEEeccEEEEccCCCCCCCCC
Q 046865           91 ----EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (369)
Q Consensus        91 ----~v~~~~g~~~~~d~lviAtG~~~~~p~~  118 (369)
                          .+.+.+++++.+|.+++|+|.+|+.+..
T Consensus       236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l  267 (451)
T PRK07846        236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLL  267 (451)
T ss_pred             CCEEEEEECCCcEeecCEEEEEECCccCcccc
Confidence                3555677889999999999999987653

>PRK06753 hypothetical protein; Provisional

Probab=97.77  E-value=2.3e-05  Score=73.10  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=30.2

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +||+|||||++|+++|..|+ +|++|+|+|+++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            48999999999999999997 5999999999875

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.77  E-value=0.00027  Score=65.14  Aligned_cols=93  Identities=27%  Similarity=0.320  Sum_probs=64.6

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC-cccc------------------------------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRLL------------------------------------------  174 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~-~~~l------------------------------------------  174 (369)
                      .|+|||||..|+|.|..+++  .|.+|.|+... +.+.                                          
T Consensus         1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN   78 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN   78 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence            48999999999999999985  49999999432 2110                                          


Q ss_pred             ----cc-------CC-cchHHHHHHHHHh-CCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCC
Q 046865          175 ----EF-------IG-PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       175 ----~~-------~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                          |.       .| ..+.+.+++.+++ .+++++. ..|+++..+++ ...|.+.+|+++.+|.||+|||.
T Consensus        79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                00       01 1345566777776 6899875 57888766555 45678899999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.76  E-value=2.5e-05  Score=72.12  Aligned_cols=36  Identities=17%  Similarity=0.401  Sum_probs=32.9

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      +||+|||||++|+++|..|+ .|.+|+|+|+++..|.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            69999999999999999987 5899999999888775

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PLN02568 polyamine oxidase

Probab=97.76  E-value=2.8e-05  Score=75.56  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865          181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       181 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G  232 (369)
                      +.+.+.+.+.  +-+|+++++|+.|+.+++.+.|.+.+|+++.+|.||+++.
T Consensus       244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP  293 (539)
T PLN02568        244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS  293 (539)
T ss_pred             HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence            3444444442  2369999999999877777888888998999999999975

>PRK06126 hypothetical protein; Provisional

Probab=97.76  E-value=2.6e-05  Score=76.57  Aligned_cols=38  Identities=26%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      |....+||+|||||++|+++|..|+ +|++|+|||+.+.
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3445689999999999999999997 5999999998764

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.74  E-value=8.2e-05  Score=71.57  Aligned_cols=89  Identities=20%  Similarity=0.348  Sum_probs=65.8

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++++|||+|+.|+..|..|++  .+.+|+++++.+.+..         .++.++.....+.+++.||++++++.+.. 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-  218 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-  218 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-
Confidence            34789999999999999999984  4899999998876521         12345556666778889999999987642 


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .       +.. +.....+|.+|+|||..
T Consensus       219 ~-------~~~-~~~~~~~d~vvlAtGa~  239 (471)
T PRK12810        219 D-------ITA-EELLAEYDAVFLGTGAY  239 (471)
T ss_pred             c-------CCH-HHHHhhCCEEEEecCCC
Confidence            1       000 11135799999999997

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.74  E-value=2.7e-05  Score=75.45  Aligned_cols=55  Identities=18%  Similarity=0.111  Sum_probs=43.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCC-----cEEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTG-----DTIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-----~~i~~d~vi~a~G~  233 (369)
                      ..+.+.+.+.++++|++|+++++|++|..+++. ..+.+.++     +++.+|.||+++..
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~  292 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPP  292 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence            468889999999999999999999999876553 23444343     57899999999875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.74  E-value=8.6e-05  Score=71.58  Aligned_cols=96  Identities=20%  Similarity=0.289  Sum_probs=59.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (369)
                      ..+|+|||||+.|+.+|..|+ .|.+|+|+++.+.+...       .++.+.......+..  .+++++.+ .+..++..
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~  253 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-------ADEQVAKEAAKAFTK--QGLDIHLGVKIGEIKTG  253 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-------CCHHHHHHHHHHHHH--cCcEEEeCcEEEEEEEc
Confidence            479999999999999998886 58999999998754311       011111000000111  24555433 34444321


Q ss_pred             ----eEEecC--C--eEEeccEEEEccCCCCCCCC
Q 046865           91 ----EVLTAE--G--RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        91 ----~v~~~~--g--~~~~~d~lviAtG~~~~~p~  117 (369)
                          .+...+  +  .++.+|.+++|+|..|+.+.
T Consensus       254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~  288 (475)
T PRK06327        254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG  288 (475)
T ss_pred             CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence                233333  3  47999999999999998764

>PLN02985 squalene monooxygenase

Probab=97.73  E-value=3.1e-05  Score=75.00  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=32.8

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +....+||+|||||++|+++|..|+ .|.+|+|+||..
T Consensus        39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            4556789999999999999999997 599999999974

>PTZ00367 squalene epoxidase; Provisional

Probab=97.72  E-value=2.6e-05  Score=76.09  Aligned_cols=36  Identities=25%  Similarity=0.521  Sum_probs=32.1

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++..+||+|||||++|+++|..|+ .|.+|+|+|+..
T Consensus        30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            345789999999999999999997 599999999975

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.72  E-value=0.00036  Score=61.21  Aligned_cols=38  Identities=29%  Similarity=0.331  Sum_probs=32.3

Q ss_pred             eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc
Q 046865           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~   52 (369)
                      .|||||+|.|||+|+..+- ++-.|+|+|++..+|....
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            6999999999999998874 5667999999988876543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.71  E-value=0.00011  Score=70.38  Aligned_cols=96  Identities=17%  Similarity=0.287  Sum_probs=59.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (369)
                      ..+++|||||+.|+.+|..|+ .|.+|+|+++.+.+...       .++.+.......+.+  .+++++.+ .+..++..
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-------~d~e~~~~l~~~L~~--~GI~i~~~~~V~~i~~~  240 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-------EDEDIAHILREKLEN--DGVKIFTGAALKGLNSY  240 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-------ccHHHHHHHHHHHHH--CCCEEEECCEEEEEEEc
Confidence            468999999999999998876 58999999998754311       011111000000111  24565543 34444422


Q ss_pred             --eEEe-cCC--eEEeccEEEEccCCCCCCCC
Q 046865           91 --EVLT-AEG--RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        91 --~v~~-~~g--~~~~~d~lviAtG~~~~~p~  117 (369)
                        .+.. .++  .++.+|.+++|+|..|+...
T Consensus       241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~  272 (458)
T PRK06912        241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ  272 (458)
T ss_pred             CCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence              2222 233  36999999999999988764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.70  E-value=9.1e-05  Score=74.02  Aligned_cols=90  Identities=16%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++++|||+|+.|+.+|..|+.  .+.+|+++++.+.+.       +  ..+.++.+...+.+++.|+++++++.+.. 
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~-  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR-  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccC-
Confidence            35789999999999999999984  489999999887642       2  12445566667778889999999986521 


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .       +.+.+. ...+|.||+|||..+
T Consensus       269 d-------v~~~~~-~~~~DaVilAtGa~~  290 (652)
T PRK12814        269 D-------ITLEEL-QKEFDAVLLAVGAQK  290 (652)
T ss_pred             c-------cCHHHH-HhhcCEEEEEcCCCC
Confidence            1       112221 235999999999875

>PRK06370 mercuric reductase; Validated

Probab=97.70  E-value=0.00026  Score=68.10  Aligned_cols=94  Identities=26%  Similarity=0.312  Sum_probs=63.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc---cc-----c--------------------cC------Ccch-
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---LL-----E--------------------FI------GPKA-  181 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~---~l-----~--------------------~~------~~~~-  181 (369)
                      -.++|||+|+.|+..|..+++  .|.+|+++++...   .+     |                    .+      ..+. 
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   83 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAG--LGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK   83 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence            479999999999999999885  4999999997520   00     0                    00      0011 


Q ss_pred             -------------HHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          182 -------------GDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       182 -------------~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                                   ...+.+.+++. ||+++.++.+.   .++.  +++. +++++.+|.+|+|||.+|..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~--~v~v-~~~~~~~d~lViATGs~p~~p  148 (463)
T PRK06370         84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPN--TVRV-GGETLRAKRIFINTGARAAIP  148 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCC--EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence                         12334556666 99999887652   1222  3333 456799999999999998654

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.70  E-value=2.7e-05  Score=70.39  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-------cCCcEEEEcCCCCccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-------FSADVTLIDPKEYFEI   49 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-------~g~~V~lie~~~~~~~   49 (369)
                      ...+||+|||||||||+||++|+       +..+|+++||....|.
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gg  119 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGG  119 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCC
Confidence            34689999999999999998874       2689999999987764

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.69  E-value=0.00056  Score=65.17  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=41.2

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCC--CCCe-EEEcC-CCcEEeccEEEEcCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSD-TYLTS-TGDTIKADCHFLCTG  232 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~-~g~~i~~d~vi~a~G  232 (369)
                      ..+.+.+.+.+++.|++|+++++++++..+  ++.+ .+... ++.++.++.||+|+|
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG  180 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG  180 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence            457788888899999999999999988654  2322 23333 335799999999999

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PLN02697 lycopene epsilon cyclase

Probab=97.68  E-value=0.00035  Score=67.61  Aligned_cols=96  Identities=19%  Similarity=0.259  Sum_probs=68.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc----------C-------------------------C---
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------I-------------------------G---  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~----------~-------------------------~---  178 (369)
                      -+++|||+|+.|+-+|..+++  .|.+|.++++...+...          +                         +   
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y  186 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY  186 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence            479999999999999998874  48899999864221100          0                         0   


Q ss_pred             -----cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCCC
Q 046865          179 -----PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 -----~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                           ..+.+.+.+.+.+.|+++ .++.|..++.+++... +.+.+|.++.++.||.|+|...
T Consensus       187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence                 122345566667789998 5678888875555443 3557788999999999999864

>TIGR02730 carot_isom carotene isomerase

Probab=97.66  E-value=3.9e-05  Score=74.33  Aligned_cols=56  Identities=13%  Similarity=0.061  Sum_probs=47.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+.+.+.+.++++|++|+++++|.+|..+++ ...|++.+|+++++|.||+++|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            36788899999999999999999999876544 446777888899999999998864

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02053 MerA mercuric reductase

Probab=97.66  E-value=0.00012  Score=70.36  Aligned_cols=96  Identities=20%  Similarity=0.274  Sum_probs=59.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   90 (369)
                      ..+++|||+|+.|+.+|..|+ .|.+|+|+++.+.+...       .++...........  ..+++++.+. +..+...
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~  236 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-------EEPEISAAVEEALA--EEGIEVVTSAQVKAVSVR  236 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-------cCHHHHHHHHHHHH--HcCCEEEcCcEEEEEEEc
Confidence            479999999999999999886 58999999998754311       11111100000000  1245554432 4444321


Q ss_pred             ----eEEec---CCeEEeccEEEEccCCCCCCCC
Q 046865           91 ----EVLTA---EGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        91 ----~v~~~---~g~~~~~d~lviAtG~~~~~p~  117 (369)
                          .+.+.   +++++.+|.+++|+|.+|+...
T Consensus       237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~  270 (463)
T TIGR02053       237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTDG  270 (463)
T ss_pred             CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence                23322   2367999999999999988763

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.65  E-value=0.00052  Score=55.48  Aligned_cols=94  Identities=20%  Similarity=0.310  Sum_probs=62.0

Q ss_pred             EEEcCChhHHHHHHHHhhhC---CCCeEEEEEcCccc---------------------cccC---C-cchH---------
Q 046865          140 LIVGGGPTGVELAGEIAVDF---PEKKVTLVHKGSRL---------------------LEFI---G-PKAG---------  182 (369)
Q Consensus       140 ~vvG~G~~g~e~a~~l~~~~---~~~~v~lv~~~~~~---------------------l~~~---~-~~~~---------  182 (369)
                      +|||+|+.|+-++..|.+..   ...+|+++++.+.-                     ++.+   + +.+.         
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            48999999999999988763   46789999885321                     0000   0 1111         


Q ss_pred             -----------------HHHH----HHHH--hCCcEEE-eCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          183 -----------------DKTL----DWLI--SKKVDVK-LGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       183 -----------------~~~~----~~l~--~~gv~i~-~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                                       +++.    +.++  ..++++. ...+|..++..++...+.+.+|..+.+|.||+|+|.
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence                             1111    1111  2344443 345788887777777888899999999999999996

>PLN02661 Putative thiazole synthesis

Probab=97.65  E-value=4.4e-05  Score=69.14  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=32.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~~~~   48 (369)
                      ..+||+|||||++|++||+.|+ . +++|+|||++...+
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G  129 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG  129 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence            4689999999999999999997 3 79999999987654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.65  E-value=8.6e-05  Score=70.09  Aligned_cols=94  Identities=20%  Similarity=0.332  Sum_probs=62.1

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (369)
                      .++++|||+|+.|+.+|..|+ +|++|+++|+.+.++.....      +.+.. .+....+. .+++++. ..+..++.+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~------~~~~~-~~~~~l~~-~gi~~~~~~~~~~i~~~  207 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD------PEVAE-ELAELLEK-YGVELLLGTKVVGVEGK  207 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh------HHHHH-HHHHHHHH-CCcEEEeCCceEEEEcc
Confidence            479999999999999999986 69999999999887643321      01110 01111111 1345532 233445432


Q ss_pred             ----e---EEecCCeEEeccEEEEccCCCCC
Q 046865           91 ----E---VLTAEGRRVVYDYLVIATGHKDP  114 (369)
Q Consensus        91 ----~---v~~~~g~~~~~d~lviAtG~~~~  114 (369)
                          .   +...++..+++|.+++++|.+|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         208 GNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             cCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence                1   46667788999999999999986

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.65  E-value=0.00012  Score=70.06  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=59.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE-   89 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (369)
                      ..+++|||||+.|+.+|..|+ .|.+|+||++.+.+...       .++.........+.  ..+++++.+ .+..+.. 
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-------~d~~~~~~~~~~l~--~~gI~i~~~~~v~~i~~~  236 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-------FDSMISETITEEYE--KEGINVHKLSKPVKVEKT  236 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-------cCHHHHHHHHHHHH--HcCCEEEcCCEEEEEEEe
Confidence            479999999999999999886 59999999998754311       11111100000010  124454432 2333321 


Q ss_pred             ----ceEEecCC-eEEeccEEEEccCCCCCCCC
Q 046865           90 ----NEVLTAEG-RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        90 ----~~v~~~~g-~~~~~d~lviAtG~~~~~p~  117 (369)
                          ..+.+.++ ..+.+|.+++|+|..|+...
T Consensus       237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~  269 (450)
T TIGR01421       237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG  269 (450)
T ss_pred             CCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence                13455566 57999999999999988754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.64  E-value=4.8e-05  Score=70.67  Aligned_cols=47  Identities=26%  Similarity=0.398  Sum_probs=39.5

Q ss_pred             eCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          257 VDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       257 vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      .+++|+++..||+|++|.+.+....   ..|..+|.+|+.|++..+.|++
T Consensus       321 l~~~l~~k~~~~l~~AGqi~g~~Gy---~ea~a~G~~Ag~n~~~~~~g~~  367 (436)
T PRK05335        321 LDPTLQLKKRPNLFFAGQITGVEGY---VESAASGLLAGINAARLALGKE  367 (436)
T ss_pred             CchhccccCCCCEEeeeeecCchHH---HHHHHHHHHHHHHHHHHhcCCC
Confidence            4567999889999999999986432   3788999999999999988865

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.64  E-value=0.00012  Score=72.98  Aligned_cols=90  Identities=17%  Similarity=0.234  Sum_probs=67.5

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++++|||+|+.|+..|..|+.  .|.+|+++++.+.+.       +  .+++++.+...+.+++.||++++++.+..-
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  386 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD  386 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence            36899999999999999999984  488999999987643       1  245566666677889999999999876320


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                              +.+.+ ....+|.|++|+|..+
T Consensus       387 --------~~~~~-l~~~~DaV~latGa~~  407 (639)
T PRK12809        387 --------ITFSD-LTSEYDAVFIGVGTYG  407 (639)
T ss_pred             --------CCHHH-HHhcCCEEEEeCCCCC
Confidence                    11111 1346899999999864

>TIGR03452 mycothione_red mycothione reductase

Probab=97.64  E-value=0.00017  Score=69.10  Aligned_cols=95  Identities=16%  Similarity=0.256  Sum_probs=60.3

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeec-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITE-   89 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-   89 (369)
                      ..+++|||||+.|+.+|..|+ .|.+|+||++.+.+...       .++.... .+....  ..+++++. ..+..++. 
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-------~d~~~~~-~l~~~~--~~gI~i~~~~~V~~i~~~  238 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-------LDEDISD-RFTEIA--KKKWDIRLGRNVTAVEQD  238 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-------cCHHHHH-HHHHHH--hcCCEEEeCCEEEEEEEc
Confidence            479999999999999999886 58999999998754210       1111110 000100  11344432 23334431 


Q ss_pred             -c--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865           90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        90 -~--~v~~~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                       .  .+.+.+++++.+|.+++|+|.+|+...
T Consensus       239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~  269 (452)
T TIGR03452       239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDL  269 (452)
T ss_pred             CCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence             1  345556778999999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK14694 putative mercuric reductase; Provisional

Probab=97.63  E-value=0.00015  Score=69.79  Aligned_cols=94  Identities=18%  Similarity=0.263  Sum_probs=58.1

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE-   89 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (369)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++...+..        .++.........+.  ..+++++.+ .+..++. 
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~--------~~~~~~~~l~~~l~--~~GI~v~~~~~v~~i~~~  247 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ--------EDPAVGEAIEAAFR--REGIEVLKQTQASEVDYN  247 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC--------CCHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence            469999999999999998886 5899999997542210        11111100000011  125666543 3444432 


Q ss_pred             -c--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865           90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        90 -~--~v~~~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                       .  .+.+ ++.++.+|.+++|+|..|+...
T Consensus       248 ~~~~~v~~-~~~~i~~D~vi~a~G~~pn~~~  277 (468)
T PRK14694        248 GREFILET-NAGTLRAEQLLVATGRTPNTEN  277 (468)
T ss_pred             CCEEEEEE-CCCEEEeCEEEEccCCCCCcCC
Confidence             2  2333 3346999999999999988654

>PRK06834 hypothetical protein; Provisional

Probab=97.62  E-value=5.5e-05  Score=72.99  Aligned_cols=34  Identities=29%  Similarity=0.573  Sum_probs=31.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .+||+||||||+|+++|..|+ .|.+|+|||+.+.
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            589999999999999999997 5999999998764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.60  E-value=0.00022  Score=67.50  Aligned_cols=92  Identities=13%  Similarity=0.114  Sum_probs=62.5

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CCc---chHHHHHHHHHhCCcEEEeCceeee
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGP---KAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~~---~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      .+++|+|||+||.|+..|..|... .+.+|+++++.+.+...       ..+   .+.+.+.+.+...+++++.|..+..
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence            478999999999999999987643 48999999999876421       111   3344455556668899887655531


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                            .  ++.++ -.-.+|.||+|+|..+.
T Consensus       117 ------D--vt~ee-L~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ------D--LKMEE-LRNHYNCVIFCCGASEV  139 (506)
T ss_pred             ------c--cCHHH-HHhcCCEEEEEcCCCCC
Confidence                  0  11111 12378999999998753

>PRK07121 hypothetical protein; Validated

Probab=97.60  E-value=6.6e-05  Score=72.73  Aligned_cols=38  Identities=26%  Similarity=0.235  Sum_probs=33.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ..+||||||+|.||++||.+++ .|.+|+||||.+..+.
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG   57 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG   57 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            4689999999999999999986 5999999999887553

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.60  E-value=0.002  Score=61.37  Aligned_cols=133  Identities=20%  Similarity=0.241  Sum_probs=83.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCcccc----------------------ccCC----------cchH
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLL----------------------EFIG----------PKAG  182 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~l----------------------~~~~----------~~~~  182 (369)
                      -.+++|||+|++|+-+|..|.++  +.. +.++++++++.                      +.++          +++.
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~   85 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK   85 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence            35799999999999999999865  554 88999875331                      1111          1267


Q ss_pred             HHHHHHHHhCCcE--EEeCceeeeccCC--CCCeEEEcCCCcE--EeccEEEEcCCCC--CCchhhcccccCCCCCCCCc
Q 046865          183 DKTLDWLISKKVD--VKLGQRVNLDSVS--EGSDTYLTSTGDT--IKADCHFLCTGKP--VGSDWLKDTILKDSLDTDGM  254 (369)
Q Consensus       183 ~~~~~~l~~~gv~--i~~~~~v~~i~~~--~~~~~v~~~~g~~--i~~d~vi~a~G~~--p~~~~l~~~~~~~~~~~~g~  254 (369)
                      +++...+++.++.  +..++.|..+..+  ++...|+++++.+  +.+|.||+|||.-  |+.+-+  .+.   .+-.|.
T Consensus        86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--~G~---~~f~g~  160 (443)
T COG2072          86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--AGL---DEFKGR  160 (443)
T ss_pred             HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC--CCc---cCCCce
Confidence            7888888877654  4455556554433  3456777777755  5599999999983  332221  121   123454


Q ss_pred             EEeCCc----eeeccCCCeEEecccC
Q 046865          255 LMVDEN----LRVKGQKNIFAIGDIT  276 (369)
Q Consensus       255 i~vd~~----l~~~~~~~i~a~GD~~  276 (369)
                      +.--.+    ... .-++|-+||--+
T Consensus       161 ~~HS~~~~~~~~~-~GKrV~VIG~Ga  185 (443)
T COG2072         161 ILHSADWPNPEDL-RGKRVLVIGAGA  185 (443)
T ss_pred             EEchhcCCCcccc-CCCeEEEECCCc
Confidence            433221    222 357899999554

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.59  E-value=5.5e-05  Score=71.69  Aligned_cols=58  Identities=22%  Similarity=0.222  Sum_probs=41.0

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc---CCCc--EEeccEEEEcCCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT---STGD--TIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~--~i~~d~vi~a~G~~p~  236 (369)
                      ..+...+.+.++++|++|+.++.++++..+++.+ .+..   .+|+  ++.++.||+|||-...
T Consensus       141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            4678888999999999999999999987765532 2222   4554  6789999999997543

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02507 glutathione reductase

Probab=97.59  E-value=0.00019  Score=69.45  Aligned_cols=96  Identities=24%  Similarity=0.254  Sum_probs=60.3

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE-   89 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (369)
                      ..+|+|||||+.|+.+|..++ .|.+|+|+++.+.+..   .    .++.........+.  -.+++++.+ .+..+.. 
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~---~----~d~~~~~~l~~~l~--~~GI~i~~~~~V~~i~~~  273 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR---G----FDDEMRAVVARNLE--GRGINLHPRTNLTQLTKT  273 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc---c----cCHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEe
Confidence            468999999999999998886 5899999998764321   0    11111100000010  124555433 2333331 


Q ss_pred             -c--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865           90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        90 -~--~v~~~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                       +  .+...+++++.+|.+++|+|.+|+...
T Consensus       274 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  304 (499)
T PLN02507        274 EGGIKVITDHGEEFVADVVLFATGRAPNTKR  304 (499)
T ss_pred             CCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence             1  355557778999999999999988764

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.59  E-value=0.0012  Score=62.42  Aligned_cols=136  Identities=13%  Similarity=0.156  Sum_probs=86.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-------------------------------cC-------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------------------------------FI-------  177 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-------------------------------~~-------  177 (369)
                      .++++|||+|++|+-.|..|.+  .|.++++++|++.+..                               .+       
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~   83 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP   83 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence            6889999999999999999985  4899999998754311                               00       


Q ss_pred             ---C--cchHHHHHHHHHhCCc--EEEeCceeeeccCCC-CCeEEEcCCC----cEEeccEEEEcCCCC--CCchhhccc
Q 046865          178 ---G--PKAGDKTLDWLISKKV--DVKLGQRVNLDSVSE-GSDTYLTSTG----DTIKADCHFLCTGKP--VGSDWLKDT  243 (369)
Q Consensus       178 ---~--~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~-~~~~v~~~~g----~~i~~d~vi~a~G~~--p~~~~l~~~  243 (369)
                         +  .++.++++..++.-++  .|.+++.+.+++..+ +...|.+.++    ++.-+|.|++|+|-.  |+.+.+.  
T Consensus        84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~--  161 (448)
T KOG1399|consen   84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP--  161 (448)
T ss_pred             ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC--
Confidence               0  1456667777776665  578888787777665 5666665443    367799999999976  5444332  


Q ss_pred             ccCCCCCCCCcEEeCCceeec---cCCCeEEecccC
Q 046865          244 ILKDSLDTDGMLMVDENLRVK---GQKNIFAIGDIT  276 (369)
Q Consensus       244 ~~~~~~~~~g~i~vd~~l~~~---~~~~i~a~GD~~  276 (369)
                      +.+.+.- .|.+.---.++..   ....|.++|--.
T Consensus       162 g~~~~~f-~G~~iHS~~Yk~~e~f~~k~VlVIG~g~  196 (448)
T KOG1399|consen  162 GPGIESF-KGKIIHSHDYKSPEKFRDKVVLVVGCGN  196 (448)
T ss_pred             CCchhhc-CCcceehhhccCcccccCceEEEECCCc
Confidence            2211111 2333322222221   246788888443

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.58  E-value=0.00049  Score=65.19  Aligned_cols=96  Identities=22%  Similarity=0.270  Sum_probs=67.4

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCcccccc-----CCcc-------------------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEF-----IGPK-------------------------------  180 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~~~l~~-----~~~~-------------------------------  180 (369)
                      +|+|||||+.|+-+|..|++  .+ .+|+++++.+.+.+.     +.+.                               
T Consensus         2 ~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   79 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFE   79 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEE
Confidence            68999999999999999984  25 699999987543100     0000                               


Q ss_pred             -----------------------hHHHHHHHHHhC--CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          181 -----------------------AGDKTLDWLISK--KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       181 -----------------------~~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                                             ....+.+.|.+.  .+.++.+++|+.++.+++.+.+.+++|+++++|.||.|.|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence                                   011122223221  4567889999888766667788888998999999999999753

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.58  E-value=8.7e-05  Score=52.55  Aligned_cols=34  Identities=44%  Similarity=0.695  Sum_probs=30.7

Q ss_pred             eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      +|+|||||+.|+.+|..|+ .+.+|+||++++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            5899999999999999986 599999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.58  E-value=0.00048  Score=66.22  Aligned_cols=94  Identities=22%  Similarity=0.193  Sum_probs=60.6

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc------CCc-----------------------------chH
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP-----------------------------KAG  182 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~------~~~-----------------------------~~~  182 (369)
                      .++|||+|+.|+..|..+++  .|.+|+++++.+.+...      .+.                             ++.
T Consensus         5 DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~   82 (466)
T PRK06115          5 DVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA   82 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence            69999999999999999885  49999999964322110      000                             000


Q ss_pred             --------------HHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCC
Q 046865          183 --------------DKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVG  236 (369)
Q Consensus       183 --------------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~  236 (369)
                                    ..+...+++.+|+++.+..  ++. +++.+.+.+.+|+  ++++|.+|+|||.+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~  149 (466)
T PRK06115         83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLD-GVGKVVVKAEDGSETQLEAKDIVIATGSEPT  149 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEc-cCCEEEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence                          1122334455777776642  222 2234556666664  6999999999999884

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.57  E-value=0.00022  Score=68.56  Aligned_cols=96  Identities=20%  Similarity=0.292  Sum_probs=59.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (369)
                      ..+|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+...       .++.........+.+  .+++++.+ .+..++..
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-------~d~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~  242 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-------EDAEVSKEIAKQYKK--LGVKILTGTKVESIDDN  242 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-------cCHHHHHHHHHHHHH--CCCEEEECCEEEEEEEe
Confidence            469999999999999999886 58999999987654311       011111000000111  24555533 34444321


Q ss_pred             ----eEEec--CC--eEEeccEEEEccCCCCCCCC
Q 046865           91 ----EVLTA--EG--RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        91 ----~v~~~--~g--~~~~~d~lviAtG~~~~~p~  117 (369)
                          .+.+.  +|  +++.+|.+++|+|.+|+...
T Consensus       243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~  277 (466)
T PRK07818        243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG  277 (466)
T ss_pred             CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence                23332  45  47999999999999988764

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.57  E-value=6.4e-05  Score=72.10  Aligned_cols=55  Identities=20%  Similarity=0.341  Sum_probs=42.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEcCCCc-----EEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLTSTGD-----TIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~-----~i~~d~vi~a~G~  233 (369)
                      ..+.+.+.+.+++.|++|++++.|++|...+ +.+ .+++.+|+     ++.+|.||+|+..
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            4567888888988999999999999996433 323 45565554     7999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.55  E-value=7.7e-05  Score=73.61  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=31.6

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .++.+|+|||||++||++|..|+ +|++|+|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45689999999999999999997 599999999964

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.55  E-value=8e-05  Score=74.07  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             CCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~   46 (369)
                      ..++||+||||||+||++|..|++  |.+|+|||+.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            347899999999999999999974  899999999864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.54  E-value=0.00019  Score=72.00  Aligned_cols=90  Identities=18%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++++|||+|+.|+..|..|+.  .|.+|+++++.+.+.       |  .++.++.....+.+++.|+++++++.+..-
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            45799999999999999999984  589999999876542       2  124455555667788899999999876310


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                              +...+ ....+|.|++|+|..+
T Consensus       404 --------i~~~~-~~~~~DavilAtGa~~  424 (654)
T PRK12769        404 --------ISLES-LLEDYDAVFVGVGTYR  424 (654)
T ss_pred             --------CCHHH-HHhcCCEEEEeCCCCC
Confidence                    11111 1236999999999753

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.52  E-value=9.2e-05  Score=64.91  Aligned_cols=38  Identities=13%  Similarity=0.320  Sum_probs=34.4

Q ss_pred             cceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCcccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~   50 (369)
                      ++|++|||+|.+|+.+|..|+. |.+|+||||++++|+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN   39 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN   39 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence            4799999999999999997765 9999999999999864

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.51  E-value=0.00078  Score=70.61  Aligned_cols=100  Identities=19%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC-----------CcchHHHHHHHHHhC-CcEEEeCceee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------GPKAGDKTLDWLISK-KVDVKLGQRVN  203 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~-----------~~~~~~~~~~~l~~~-gv~i~~~~~v~  203 (369)
                      ..+|+|||+|+.|+..|..+++  .+.+|++++..+.+....           ..+....+.+.+++. +|++++++.|.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~  240 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF  240 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence            4679999999999999999874  599999999876543211           113334455666655 59999999887


Q ss_pred             eccCCCCCeEEE-c--------CC---C--cEEeccEEEEcCCCCCCc
Q 046865          204 LDSVSEGSDTYL-T--------ST---G--DTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       204 ~i~~~~~~~~v~-~--------~~---g--~~i~~d~vi~a~G~~p~~  237 (369)
                      .+...+....+. .        ..   .  .++.+|.||+|||..+..
T Consensus       241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            664211110110 0        00   1  168999999999998754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.51  E-value=0.00011  Score=71.99  Aligned_cols=36  Identities=31%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCCc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF   47 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~   47 (369)
                      ..+||||||+|.||++||.+++.|.+|+||||.+..
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~   43 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLK   43 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCC
Confidence            468999999999999999999889999999998653

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.51  E-value=0.00066  Score=66.14  Aligned_cols=102  Identities=19%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCccc------cc-cCC-----cchHHHHHHHHHhCCcEEEeCcee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRL------LE-FIG-----PKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~~~------l~-~~~-----~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      ..+++|||.|..|..+..++.+..++ .+||++...++.      ++ .+.     +++.-.-.++.+++||+++++.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            46799999999999988888764333 578888765543      11 111     234444568899999999999999


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchh
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDW  239 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~  239 (369)
                      ..+..+  ...|++++|.++.+|.+|+|||..|....
T Consensus        83 ~~idr~--~k~V~t~~g~~~~YDkLilATGS~pfi~P  117 (793)
T COG1251          83 IQIDRA--NKVVTTDAGRTVSYDKLIIATGSYPFILP  117 (793)
T ss_pred             EEeccC--cceEEccCCcEeecceeEEecCccccccC
Confidence            988654  45688899999999999999999986543

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.50  E-value=9.8e-05  Score=66.52  Aligned_cols=64  Identities=16%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhCCcEEEeCceeeeccC--CCC---CeEEEcCCCc----EEeccEEEEcCCCCCCchhhccccc
Q 046865          182 GDKTLDWLISKKVDVKLGQRVNLDSV--SEG---SDTYLTSTGD----TIKADCHFLCTGKPVGSDWLKDTIL  245 (369)
Q Consensus       182 ~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~---~~~v~~~~g~----~i~~d~vi~a~G~~p~~~~l~~~~~  245 (369)
                      ...+...+++.+++|++++.|.++..  +++   .+.+...++.    .+.++.||+|.|.--.+.+|..+++
T Consensus       196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            44555666555999999999999843  233   2334444443    5678999999997644555655554

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.48  E-value=0.00026  Score=68.25  Aligned_cols=96  Identities=17%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             cceEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINI   87 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   87 (369)
                      ..+++|||||+.|+.+|..+.    .|.+|+||++.+.+..       ..++.........+.+  .+++++.+ .+..+
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-------~~d~~~~~~l~~~L~~--~GI~i~~~~~v~~i  257 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-------GFDSTLRKELTKQLRA--NGINIMTNENPAKV  257 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-------ccCHHHHHHHHHHHHH--cCCEEEcCCEEEEE
Confidence            478999999999999996542    3899999999875431       0111111110001111  24555433 23333


Q ss_pred             ec-----ceEEecCCeEEeccEEEEccCCCCCCCC
Q 046865           88 TE-----NEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        88 ~~-----~~v~~~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                      ..     ..+.+.++.++.+|.+++|+|..|+...
T Consensus       258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~  292 (486)
T TIGR01423       258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT  292 (486)
T ss_pred             EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence            21     1355556778999999999999987654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.46  E-value=0.00031  Score=68.10  Aligned_cols=95  Identities=21%  Similarity=0.294  Sum_probs=58.1

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeee--
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINIT--   88 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   88 (369)
                      ..+++|||||+.|+.+|..|+ .|.+|+|++++..+.    .    .++.........+.+  .+++++.+. +..+.  
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----~----~d~~~~~~l~~~l~~--~GV~i~~~~~v~~v~~~  251 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR----G----FDRQCSEKVVEYMKE--QGTLFLEGVVPINIEKM  251 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc----c----CCHHHHHHHHHHHHH--cCCEEEcCCeEEEEEEc
Confidence            458999999999999999886 599999998743211    1    111111000000111  145554332 22222  


Q ss_pred             -c-ceEEecCCeEEeccEEEEccCCCCCCCC
Q 046865           89 -E-NEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        89 -~-~~v~~~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                       . ..+.+.+++++.+|.+++|+|.+|+...
T Consensus       252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  282 (499)
T PTZ00052        252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKG  282 (499)
T ss_pred             CCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence             1 1355567788999999999999988654

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.46  E-value=0.00012  Score=69.29  Aligned_cols=34  Identities=41%  Similarity=0.615  Sum_probs=30.0

Q ss_pred             ceEEEECCChHHHHHHHHccc-C-CcEEEEcCCCCc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEYF   47 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~-g-~~V~lie~~~~~   47 (369)
                      .+|+|||||++||++|..|++ | .+|+|+||.+.+
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            379999999999999999985 6 699999998653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02529 lysine-specific histone demethylase 1

Probab=97.46  E-value=0.00013  Score=72.93  Aligned_cols=40  Identities=25%  Similarity=0.461  Sum_probs=35.6

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~   50 (369)
                      ...++|+|||||++||+||..|+ .|++|+|+|+++.+|..
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~  198 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR  198 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence            45689999999999999999997 59999999999988754

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.46  E-value=0.00074  Score=65.79  Aligned_cols=94  Identities=23%  Similarity=0.247  Sum_probs=64.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc-ccc-----c---------------cC------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS-RLL-----E---------------FI------------------  177 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~-~~l-----~---------------~~------------------  177 (369)
                      -.|+|||||+.|+++|..+++  .|.+|.++++.. .+.     |               .+                  
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l   82 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML   82 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHH--cCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence            369999999999999999884  599999998863 110     0               00                  


Q ss_pred             ---------------Cc-chHHHHHHHHHhC-CcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCC
Q 046865          178 ---------------GP-KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       178 ---------------~~-~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                                     |+ .+...+.+.+++. |++++.. .|..+..+++. ..|.+.+|.++.|+.||+|||.
T Consensus        83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCc
Confidence                           00 0223444555544 7888644 56666544443 3477788999999999999994

>PLN02676 polyamine oxidase

Probab=97.45  E-value=0.00014  Score=70.18  Aligned_cols=40  Identities=23%  Similarity=0.160  Sum_probs=36.0

Q ss_pred             cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          194 VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       194 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      .+|+++++|++|+.+++.+.|++.+|+++.+|.||+|...
T Consensus       245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl  284 (487)
T PLN02676        245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL  284 (487)
T ss_pred             CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence            6799999999998877788999999989999999999873

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.44  E-value=0.00014  Score=70.59  Aligned_cols=34  Identities=35%  Similarity=0.500  Sum_probs=31.6

Q ss_pred             cceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~   46 (369)
                      .+||||||+|.||++||.+++.|.+|+||||.+.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~   36 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTK   36 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCC
Confidence            5799999999999999999988999999999875

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.43  E-value=0.00013  Score=72.07  Aligned_cols=53  Identities=23%  Similarity=0.160  Sum_probs=39.4

Q ss_pred             CCCcEEeCCceeeccCCCeEEecccCCccc------cchhHHHHHHHHHHHHHHHHHhhC
Q 046865          251 TDGMLMVDENLRVKGQKNIFAIGDITDIRE------IKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       251 ~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~------~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ..|.|.||.+.+| +.|++||+|+|++...      -.....|.-.|++++++++..+.+
T Consensus       354 ~~GGi~vd~~~~t-~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~  412 (589)
T PRK08641        354 SMGGLWVDYDQMT-NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKG  412 (589)
T ss_pred             eCCCeEECCCCCe-ECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            3588999999988 6999999999974311      112346778899999998876543

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.43  E-value=0.00013  Score=72.17  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=31.5

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ....+||||||+|.|||+||.+++ .|.+|+||||..
T Consensus         9 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~   45 (591)
T PRK07057          9 PRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF   45 (591)
T ss_pred             ccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            345689999999999999999886 589999999974

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.43  E-value=0.00013  Score=71.00  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ..+||||||+| +|++||.+++ .|.+|+||||.+..+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg   43 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG   43 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            36899999999 9999999986 5999999999886554

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.42  E-value=0.00016  Score=72.68  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=35.9

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~   50 (369)
                      ....++|+|||||++|++||+.|. +|++|+|+|+++.+|..
T Consensus       235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr  276 (808)
T PLN02328        235 GVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR  276 (808)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence            345789999999999999999996 69999999999988754

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.40  E-value=0.00015  Score=71.23  Aligned_cols=53  Identities=15%  Similarity=0.126  Sum_probs=39.3

Q ss_pred             CCCcEEeCCceeeccCCCeEEecccCCcc--c-c----chhHHHHHHHHHHHHHHHHHhh
Q 046865          251 TDGMLMVDENLRVKGQKNIFAIGDITDIR--E-I----KQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       251 ~~g~i~vd~~l~~~~~~~i~a~GD~~~~~--~-~----~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      ..|.|.||.+.|+++.|++||+|+|++..  . -    .....+.-.|++|+++++..+.
T Consensus       345 ~~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~  404 (566)
T PRK06452        345 YMGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK  404 (566)
T ss_pred             ecCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            35789999999974599999999997521  1 0    1234677889999999887654

>PRK11445 putative oxidoreductase; Provisional

Probab=97.37  E-value=0.0019  Score=59.66  Aligned_cols=95  Identities=23%  Similarity=0.233  Sum_probs=64.7

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--c-------cCCc-----------------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--E-------FIGP-----------------------------  179 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~-------~~~~-----------------------------  179 (369)
                      +|+|||+|+.|+-+|..|++  . .+|+++++.+...  +       .+.+                             
T Consensus         3 dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~   79 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI   79 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence            68999999999999998874  3 7899999765210  0       0000                             


Q ss_pred             ------------c---h-HHHHHHH---HHhCCcEEEeCceeeeccCCCCCeEEEc-CCCc--EEeccEEEEcCCCCC
Q 046865          180 ------------K---A-GDKTLDW---LISKKVDVKLGQRVNLDSVSEGSDTYLT-STGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ------------~---~-~~~~~~~---l~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p  235 (369)
                                  .   + ...+.+.   ..+.|++++.++.+..++.+++...+.+ .+|+  ++++|.||.|+|...
T Consensus        80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445         80 DLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS  157 (351)
T ss_pred             cccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence                        0   0 1111122   2346899999999998876666666664 4564  689999999999864

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.36  E-value=0.00018  Score=70.55  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=31.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+||||||+|.|||+||.+++ .|.+|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4689999999999999999886 599999999988

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.36  E-value=0.00016  Score=69.52  Aligned_cols=55  Identities=16%  Similarity=0.173  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCC--CC---e-EEEcCCC---cEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GS---D-TYLTSTG---DTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~---~-~v~~~~g---~~i~~d~vi~a~G~~  234 (369)
                      -+.+.+.+.++++|++|+++++|++++.++  +.   + .+.+.+|   +++.+|.||+|++..
T Consensus       220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            456778899999999999999999997643  21   2 2234433   468999999999853

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.33  E-value=0.00019  Score=70.84  Aligned_cols=53  Identities=15%  Similarity=0.157  Sum_probs=38.8

Q ss_pred             CCCcEEeCCceeecc-----CCCeEEecccCCcc-c------cchhHHHHHHHHHHHHHHHHHhh
Q 046865          251 TDGMLMVDENLRVKG-----QKNIFAIGDITDIR-E------IKQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       251 ~~g~i~vd~~l~~~~-----~~~i~a~GD~~~~~-~------~~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      ..|.|.||.+.||.+     .|++||+|+|++.. .      -.....|.-.|++|+++++..+.
T Consensus       351 t~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~  415 (577)
T PRK06069        351 TMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYAL  415 (577)
T ss_pred             eCCCceECCCCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            357899999999832     89999999997521 1      01234577889999999887654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.33  E-value=0.00072  Score=66.65  Aligned_cols=90  Identities=22%  Similarity=0.392  Sum_probs=64.5

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCcee-e
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRV-N  203 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v-~  203 (369)
                      ...++|+|+|+|++|+.+|..++.  .|.+|+++++.+.+..         .++.+..+.-.+.+++.|++++.++.+ .
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~  212 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE  212 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence            456899999999999999999874  4889999998765421         123345555556778899999999876 3


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+..+.      +    ...+|.|++|+|..+
T Consensus       213 ~~~~~~------~----~~~~D~Vi~AtG~~~  234 (564)
T PRK12771        213 DITLEQ------L----EGEFDAVFVAIGAQL  234 (564)
T ss_pred             cCCHHH------H----HhhCCEEEEeeCCCC
Confidence            322110      1    124799999999864

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.31  E-value=0.00022  Score=70.61  Aligned_cols=35  Identities=23%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ..+||||||||.||++||.+++ .|.+|+||||...
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~   46 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP   46 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            4689999999999999999886 5899999999753

>PRK06126 hypothetical protein; Provisional

Probab=97.31  E-value=0.0015  Score=64.17  Aligned_cols=51  Identities=24%  Similarity=0.296  Sum_probs=37.3

Q ss_pred             HHHHHHHh-CCcEEEeCceeeeccCCCCCeEEEc---CCCc--EEeccEEEEcCCCC
Q 046865          184 KTLDWLIS-KKVDVKLGQRVNLDSVSEGSDTYLT---STGD--TIKADCHFLCTGKP  234 (369)
Q Consensus       184 ~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~i~~d~vi~a~G~~  234 (369)
                      .+.+.+++ .++++++++++.+++.+++.+.+++   .+|+  ++.+|.||.|.|..
T Consensus       131 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~  187 (545)
T PRK06126        131 ILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGAR  187 (545)
T ss_pred             HHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcc
Confidence            33444444 4899999999999887666555554   3454  68999999999974

>PRK13984 putative oxidoreductase; Provisional

Probab=97.31  E-value=0.00061  Score=67.78  Aligned_cols=90  Identities=29%  Similarity=0.309  Sum_probs=65.6

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      ...++++|||+|+.|+..|..|.+  .|.+|+++++.+....         ..+.++.....+.+++.|++++.++.+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  358 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK  358 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC
Confidence            346789999999999999999985  4899999998775421         12334455556778889999999988742


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .        +..++ ...++|.||+|||..
T Consensus       359 ~--------~~~~~-~~~~yD~vilAtGa~  379 (604)
T PRK13984        359 D--------IPLEE-LREKHDAVFLSTGFT  379 (604)
T ss_pred             c--------CCHHH-HHhcCCEEEEEcCcC
Confidence            1        11111 135799999999976

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.31  E-value=0.00018  Score=71.31  Aligned_cols=45  Identities=20%  Similarity=0.145  Sum_probs=36.2

Q ss_pred             CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ++++| +.|++||+|||++.....++..+..+|++++.++...+..
T Consensus       389 ~~~~T-~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~  433 (608)
T PRK06854        389 YNRMT-TVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD  433 (608)
T ss_pred             ccccc-CCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence            89998 6999999999986433346677888999999999877654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.30  E-value=0.00027  Score=69.66  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=33.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ..+||||||+|.||++||..++ .|.+|+|+||.+..+.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG   48 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG   48 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence            4689999999999999999875 6999999999987654

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.30  E-value=0.0017  Score=63.21  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=64.7

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------------------cc---CC------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------------EF---IG------------------  178 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------------------~~---~~------------------  178 (369)
                      .++|+|+|+.|+++|..++.  .+.+|.++++.....                  ..   ++                  
T Consensus         2 DViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln   79 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN   79 (617)
T ss_pred             eEEEECccHHHHHHHHHHHH--CCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence            48999999999999999884  488899888652110                  00   00                  


Q ss_pred             ----c------------chHHHHHHHHHhC-CcEEEeCceeeeccCC-C-CCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 ----P------------KAGDKTLDWLISK-KVDVKLGQRVNLDSVS-E-GSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ----~------------~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~-~-~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                          +            .+...+++.+++. +++++.++ +..+..+ + ....|.+.+|..+.|+.||+|||.-.
T Consensus        80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~-Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGE-VEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeE-EEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                1            1223455666666 78888764 4444332 3 34567788888999999999999863

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.30  E-value=0.00022  Score=71.20  Aligned_cols=53  Identities=13%  Similarity=0.097  Sum_probs=39.1

Q ss_pred             CCcEEeCCceeeccCCCeEEecccCCccc---c----chhHHHHHHHHHHHHHHHHHhhC
Q 046865          252 DGMLMVDENLRVKGQKNIFAIGDITDIRE---I----KQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       252 ~g~i~vd~~l~~~~~~~i~a~GD~~~~~~---~----~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      -|.|.||.+.||.+.|++||+|+|++...   -    .....+.-.|++++++++..+.+
T Consensus       372 mGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~  431 (657)
T PRK08626        372 MGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLG  431 (657)
T ss_pred             cCCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            47799999999845999999999975211   0    12245777899999998876643

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.30  E-value=0.00024  Score=70.55  Aligned_cols=35  Identities=26%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ..+||||||||.||++||.+++ .|.+|+||||...
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~   63 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP   63 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence            3679999999999999999986 5899999999864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.29  E-value=0.00056  Score=65.98  Aligned_cols=95  Identities=15%  Similarity=0.174  Sum_probs=56.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeee--
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINIT--   88 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   88 (369)
                      ..+++|||||+.|+.+|..|+ .|.+|+|+++...+.        ..++.........+..  .+++++.+. +..+.  
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------~~d~~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~  249 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------GFDQDCANKVGEHMEE--HGVKFKRQFVPIKVEQI  249 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc--------ccCHHHHHHHHHHHHH--cCCEEEeCceEEEEEEc
Confidence            458999999999999999886 599999999742111        0111111100000111  245554332 22222  


Q ss_pred             -cc-eEEecCC---eEEeccEEEEccCCCCCCCC
Q 046865           89 -EN-EVLTAEG---RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        89 -~~-~v~~~~g---~~~~~d~lviAtG~~~~~p~  117 (369)
                       .. .+...++   .++.+|.+++|+|..|+...
T Consensus       250 ~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~  283 (484)
T TIGR01438       250 EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK  283 (484)
T ss_pred             CCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence             11 3444444   47999999999999988654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00058 glutathione reductase; Provisional

Probab=97.28  E-value=0.00056  Score=66.89  Aligned_cols=96  Identities=11%  Similarity=0.191  Sum_probs=57.7

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (369)
                      ..+|+|||||+.|+.+|..|+ .|.+|+|+++.+.+...       .++...........+  .+++++.+ .+..++..
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-------~d~~i~~~l~~~L~~--~GV~i~~~~~V~~I~~~  307 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-------FDETIINELENDMKK--NNINIITHANVEEIEKV  307 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-------CCHHHHHHHHHHHHH--CCCEEEeCCEEEEEEec
Confidence            579999999999999999886 59999999998754310       111111000000111  14444332 23333321


Q ss_pred             -----eEEecC-CeEEeccEEEEccCCCCCCCC
Q 046865           91 -----EVLTAE-GRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        91 -----~v~~~~-g~~~~~d~lviAtG~~~~~p~  117 (369)
                           .+...+ ++++.+|.+++|+|..|+...
T Consensus       308 ~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~  340 (561)
T PTZ00058        308 KEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED  340 (561)
T ss_pred             CCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence                 122223 457999999999999987654

>PRK14727 putative mercuric reductase; Provisional

Probab=97.28  E-value=0.00068  Score=65.45  Aligned_cols=94  Identities=18%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeee--
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINIT--   88 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (369)
                      ..+|+|||||+.|+.+|..|+ .|.+|+||++...+.    .    .++.........+.  ..+++++.+ .+..+.  
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----~----~d~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~  257 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----R----EDPLLGETLTACFE--KEGIEVLNNTQASLVEHD  257 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----c----chHHHHHHHHHHHH--hCCCEEEcCcEEEEEEEe
Confidence            468999999999999999886 599999999753211    0    11111100000000  124555432 333332  


Q ss_pred             cc--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        89 ~~--~v~~~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                      ..  .+...+ .++.+|.+++|+|..|+...
T Consensus       258 ~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~~  287 (479)
T PRK14727        258 DNGFVLTTGH-GELRAEKLLISTGRHANTHD  287 (479)
T ss_pred             CCEEEEEEcC-CeEEeCEEEEccCCCCCccC
Confidence            12  233334 36899999999999987654

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.27  E-value=0.00029  Score=69.05  Aligned_cols=39  Identities=18%  Similarity=0.383  Sum_probs=34.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~   50 (369)
                      ...+||||||+| +|++||..++ .|.+|+||||.+.+|..
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~   53 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS   53 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence            457999999999 8999998876 59999999999887754

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.27  E-value=0.00027  Score=69.39  Aligned_cols=38  Identities=18%  Similarity=0.248  Sum_probs=33.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ..+||||||+|.+|++||.+++ .|.+|+|||+.+..+.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG   43 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG   43 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            3689999999999999999986 5999999999876554

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.27  E-value=0.00023  Score=65.60  Aligned_cols=45  Identities=20%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      +.|+|+..+++|.+|-+.+....   ..|..||.+|+-|....-.+++
T Consensus       381 ~sLeTkkV~GLF~AGQINGTTGY---EEAAAQGIiAGiNA~~~a~~~~  425 (679)
T KOG2311|consen  381 PSLETKKVQGLFFAGQINGTTGY---EEAAAQGIIAGINASLRASGKP  425 (679)
T ss_pred             hhhhhhhccceEEeeeecCccch---HHHHhhhhHhhhhhhhhhcCCC
Confidence            45788889999999999876432   4688899999999875545543

>PRK13748 putative mercuric reductase; Provisional

Probab=97.27  E-value=0.0023  Score=63.13  Aligned_cols=96  Identities=17%  Similarity=0.237  Sum_probs=63.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------------------------c---cC---Ccc-hH
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------------------E---FI---GPK-AG  182 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------------------------~---~~---~~~-~~  182 (369)
                      -.++|||+|+.|+..|..+++  .|.+|.++++.. +.                           +   ..   .+. ..
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  175 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVE--QGARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR  175 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence            579999999999999999885  489999999762 10                           0   00   000 01


Q ss_pred             HH----------------HHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCch
Q 046865          183 DK----------------TLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       183 ~~----------------~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~  238 (369)
                      +.                ..+.+++. +|+++.+. +..+  +...+.+.+.+|+  ++++|.+|+|||.+|..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  247 (561)
T PRK13748        176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFK--DDQTLIVRLNDGGERVVAFDRCLIATGASPAVP  247 (561)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence            11                11223443 78888774 3333  3345666666663  699999999999998654

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0033  Score=52.45  Aligned_cols=101  Identities=22%  Similarity=0.168  Sum_probs=70.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC--------c--------ccccc-----CCcchHHHHHHHHHhCCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG--------S--------RLLEF-----IGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~--------~--------~~l~~-----~~~~~~~~~~~~l~~~gv  194 (369)
                      ..+++|||+||.+.-.|.++++.  ..+-.+++-.        .        .-.|.     ..+++.+.+++..++.|-
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaara--elkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt   85 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARA--ELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT   85 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhc--ccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence            35799999999999888777642  2222232211        0        01233     346888999999999999


Q ss_pred             EEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhh
Q 046865          195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL  240 (369)
Q Consensus       195 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l  240 (369)
                      +|++.+ |.+++......++.++. +.+.+|.||+|||.....-.+
T Consensus        86 ~i~tEt-Vskv~~sskpF~l~td~-~~v~~~avI~atGAsAkRl~~  129 (322)
T KOG0404|consen   86 EIITET-VSKVDLSSKPFKLWTDA-RPVTADAVILATGASAKRLHL  129 (322)
T ss_pred             eeeeee-hhhccccCCCeEEEecC-CceeeeeEEEecccceeeeec
Confidence            998874 66777666677776644 479999999999987544333

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.25  E-value=0.00066  Score=65.27  Aligned_cols=95  Identities=20%  Similarity=0.330  Sum_probs=56.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEE-eeeeeeec-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVA-SPAINITE-   89 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-   89 (369)
                      .++++|||||+.|+.+|..|+ .|.+|+++++.+.+...       .++...........+  . ++++. ..+..++. 
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~~~~~l~~--~-I~i~~~~~v~~i~~~  238 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-------EDPEVSKQAQKILSK--E-FKIKLGAKVTSVEKS  238 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-------hhHHHHHHHHHHHhh--c-cEEEcCCEEEEEEEc
Confidence            579999999999999999886 59999999998764311       111110000000000  1 33321 22233321 


Q ss_pred             --ceEE--e--cCCeEEeccEEEEccCCCCCCCC
Q 046865           90 --NEVL--T--AEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        90 --~~v~--~--~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                        ..+.  .  .++.++.+|.+++|+|..|+.+.
T Consensus       239 ~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  272 (460)
T PRK06292        239 GDEKVEELEKGGKTETIEADYVLVATGRRPNTDG  272 (460)
T ss_pred             CCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence              1232  1  23357999999999999998774

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.25  E-value=0.00028  Score=70.16  Aligned_cols=34  Identities=26%  Similarity=0.215  Sum_probs=30.7

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .+||||||+|.||++||.+++ .|.+|+||||...
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~   84 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP   84 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence            579999999999999999986 5899999999864

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.25  E-value=0.00025  Score=72.31  Aligned_cols=33  Identities=33%  Similarity=0.576  Sum_probs=29.9

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~   46 (369)
                      ++|+|||||+||+++|..|++   |++|+|+|+++.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            489999999999999999864   799999999875

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.25  E-value=0.00028  Score=68.97  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~   46 (369)
                      ..+||||||+|.||++||.+++.+.+|+||||...
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~   41 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPL   41 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCC
Confidence            45899999999999999999976689999999864

>PRK02106 choline dehydrogenase; Validated

Probab=97.25  E-value=0.00031  Score=69.23  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             CCCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~   46 (369)
                      +...+|+||||||.+|+.+|.+|+.  +++|+|||+++.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            3456899999999999999999964  899999999864

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.22  E-value=0.003  Score=59.28  Aligned_cols=94  Identities=19%  Similarity=0.241  Sum_probs=64.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC-ccc-----------cc---------------------c-------C
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRL-----------LE---------------------F-------I  177 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~-~~~-----------l~---------------------~-------~  177 (369)
                      +|+|||+|+.|+-+|..|++  .|.+|.++++. ++.           +.                     .       +
T Consensus         2 DVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLAR--AGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTI   79 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeecc
Confidence            58999999999999999884  48899999876 210           00                     0       0


Q ss_pred             C--c---------chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC------C--cEEeccEEEEcCCCC
Q 046865          178 G--P---------KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST------G--DTIKADCHFLCTGKP  234 (369)
Q Consensus       178 ~--~---------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~------g--~~i~~d~vi~a~G~~  234 (369)
                      +  .         .+-+.+.+.+.+.|++++.+ .++.+..+++.+.+++.+      |  .++.+|.||.|.|..
T Consensus        80 ~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~  154 (388)
T TIGR02023        80 PSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGAN  154 (388)
T ss_pred             CCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCC
Confidence            0  0         12234555566789999765 577776666666665542      2  379999999999964

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.21  E-value=0.00031  Score=69.31  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=30.7

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .+||||||+|.|||+||.+++ .|.+|+|+||...
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~   41 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP   41 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            579999999999999999986 5999999999854

>PRK08275 putative oxidoreductase; Provisional

Probab=97.21  E-value=0.00027  Score=69.39  Aligned_cols=50  Identities=18%  Similarity=0.202  Sum_probs=39.3

Q ss_pred             CcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          253 GMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       253 g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      |.|.||.+++| +.|++||+|||+..+ ......|.-.|+.++.++...+.+
T Consensus       357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~~~  406 (554)
T PRK08275        357 SGVWVNEKAET-TVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYVAG  406 (554)
T ss_pred             CcEEECCCCcc-CCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67999999998 799999999997533 123456778899999998876654

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.21  E-value=0.00033  Score=63.72  Aligned_cols=35  Identities=31%  Similarity=0.579  Sum_probs=31.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~   47 (369)
                      +.+|||||||.+|+++|..|. +|++|+|+|+.+..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            579999999999999999996 69999999997643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.19  E-value=0.0011  Score=62.03  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      +|+|||||..|+|+|..|++  .|.+|+++++.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCcEEEEeccccc
Confidence            68999999999999999985  49999999987654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12839 hypothetical protein; Provisional

Probab=97.19  E-value=0.00043  Score=68.11  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=33.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ..+||||||+|.+|++||..++ +|.+|+||||++.++.
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg   45 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG   45 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            4689999999999999999886 5899999999877654

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.18  E-value=0.0041  Score=58.42  Aligned_cols=97  Identities=12%  Similarity=0.117  Sum_probs=65.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--c----------------c----------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--E----------------F----------------------  176 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~----------------~----------------------  176 (369)
                      .+|+|||+|+.|+-+|..|++  .|.+|+++++.+...  .                .                      
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   80 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD   80 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence            579999999999999999885  488999999765210  0                0                      


Q ss_pred             -------CC-------------cchHHHHHHHHHhCCcEEEeCceeeeccC-CCCCeEEEcC-CCc--EEeccEEEEcCC
Q 046865          177 -------IG-------------PKAGDKTLDWLISKKVDVKLGQRVNLDSV-SEGSDTYLTS-TGD--TIKADCHFLCTG  232 (369)
Q Consensus       177 -------~~-------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~v~~~-~g~--~i~~d~vi~a~G  232 (369)
                             ++             +.+...+.+.+.+.|++++.+..+..+.. +++...|++. +|+  ++++|+||-|-|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG  160 (390)
T TIGR02360        81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDG  160 (390)
T ss_pred             CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCC
Confidence                   00             01123344555567888888877665532 3344556664 675  689999999999


Q ss_pred             CCC
Q 046865          233 KPV  235 (369)
Q Consensus       233 ~~p  235 (369)
                      ...
T Consensus       161 ~~S  163 (390)
T TIGR02360       161 FHG  163 (390)
T ss_pred             Cch
Confidence            754

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.14  E-value=0.0013  Score=61.70  Aligned_cols=57  Identities=21%  Similarity=0.233  Sum_probs=41.2

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCC--CCCeE---EE-cCCCc--EE---eccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSDT---YL-TSTGD--TI---KADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~~---v~-~~~g~--~i---~~d~vi~a~G~~p  235 (369)
                      +.+...+.+.|+++||++..+++|+.+..+  ++..+   +. ..+|+  +|   +-|.|++..|.-.
T Consensus       207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence            478899999999999999999999987643  22221   22 24453  23   4799999999753

>PLN02815 L-aspartate oxidase

Probab=97.13  E-value=0.00051  Score=67.69  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=30.5

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~   47 (369)
                      ..+||||||+|.|||+||.+++. | +|+||||.+..
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~   63 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH   63 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence            35799999999999999999874 7 99999998753

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.13  E-value=0.0011  Score=67.48  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~  170 (369)
                      ..+++|+|||+||.|+++|..|+.  .|.+|+++++.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence            356899999999999999999984  59999999975

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=97.12  E-value=0.0015  Score=55.78  Aligned_cols=97  Identities=24%  Similarity=0.253  Sum_probs=62.6

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEe----C----ceeeecc-CC
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKL----G----QRVNLDS-VS  208 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~----~----~~v~~i~-~~  208 (369)
                      .++|||||..|+.+|..|+..+|..+|.+++.++-+-+-   .--+.+-+++++-.|+=-.    +    +-+.++. .+
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksv---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~   77 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWD   77 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH---hhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhc
Confidence            368999999999999999988899999999887643221   1112233334433332100    0    1111111 12


Q ss_pred             CCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          209 EGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       209 ~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      .....+.+.+|+++.++.+.+|+|++|-.
T Consensus        78 s~ehci~t~~g~~~ky~kKOG~tg~kPkl  106 (334)
T KOG2755|consen   78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKL  106 (334)
T ss_pred             cccceEEecCCceeeEEEEEEecCCCcce
Confidence            23446788999999999999999999853

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.12  E-value=0.0039  Score=57.08  Aligned_cols=101  Identities=13%  Similarity=0.085  Sum_probs=72.1

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--ccC---------CcchHHHHHHHHHhC--CcEEEeCce
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EFI---------GPKAGDKTLDWLISK--KVDVKLGQR  201 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~~~---------~~~~~~~~~~~l~~~--gv~i~~~~~  201 (369)
                      ..++++|+|+|-.|+.+...|-  ....+|++|.+.+.++  |.+         -+.+.+.+....++.  +++++... 
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ld--ts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe-  130 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLD--TSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE-  130 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhcc--ccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc-
Confidence            4689999999999999988875  3468999999887653  222         356788888887766  56666543 


Q ss_pred             eeeccCCCCCeEEE--cCCC----cEEeccEEEEcCCCCCCch
Q 046865          202 VNLDSVSEGSDTYL--TSTG----DTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       202 v~~i~~~~~~~~v~--~~~g----~~i~~d~vi~a~G~~p~~~  238 (369)
                      -..++.+.+.+.+.  +.++    -.+.+|.+|+|+|..||+-
T Consensus       131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF  173 (491)
T KOG2495|consen  131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF  173 (491)
T ss_pred             cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence            33455555544443  3444    3689999999999998874

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.11  E-value=0.00023  Score=68.20  Aligned_cols=71  Identities=14%  Similarity=0.005  Sum_probs=54.2

Q ss_pred             CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          162 KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       162 ~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ..-+|+.+.+..+.  +..+...+....++.|+.|+.++.|+.+....+ ...|.+..| .|++..+|-|+|...
T Consensus       172 v~g~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  172 VYGGLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             heeeeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence            45567776665432  235778888899999999999999998875433 446778777 699999999999854

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.11  E-value=0.00043  Score=68.29  Aligned_cols=45  Identities=18%  Similarity=0.099  Sum_probs=33.2

Q ss_pred             CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      .+.+| +.|++||+|||++.....++..+.-+|.+++.++...+..
T Consensus       400 ~~~~T-~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~  444 (614)
T TIGR02061       400 YNRMT-TVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILD  444 (614)
T ss_pred             cCCcc-ccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHh
Confidence            55566 7999999999976433345666777899999888876643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.10  E-value=0.0011  Score=62.82  Aligned_cols=89  Identities=22%  Similarity=0.311  Sum_probs=68.9

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..++|.|||+||.|+..|..|++  .+..|+++++.+...       |  .++.++.+...+.|++.|++|++++++-. 
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~-  198 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR-  198 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC-
Confidence            45899999999999999999984  599999999887653       2  24668889999999999999999988742 


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                           .  +++++ -.-++|.|++++|..
T Consensus       199 -----~--it~~~-L~~e~Dav~l~~G~~  219 (457)
T COG0493         199 -----D--ITLEE-LLKEYDAVFLATGAG  219 (457)
T ss_pred             -----c--CCHHH-HHHhhCEEEEecccc
Confidence                 0  11111 122459999999974

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.10  E-value=0.00047  Score=66.74  Aligned_cols=38  Identities=16%  Similarity=0.131  Sum_probs=34.0

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      +||+|||+|++|+.+|+.|. +|++|++||++...+..|
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            69999999999999999986 699999999998877544

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.09  E-value=0.00052  Score=65.18  Aligned_cols=94  Identities=31%  Similarity=0.361  Sum_probs=25.5

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc------------------------------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------------------------------------------  175 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~------------------------------------------  175 (369)
                      .|+|||||+.|+-.|...++  .|.+|.|+++.+.+..                                          
T Consensus         1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~   78 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR   78 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred             CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence            48999999999999988874  4999999999864310                                          


Q ss_pred             -------cCCc-chHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcC--CC-cEEeccEEEEcCCC
Q 046865          176 -------FIGP-KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTS--TG-DTIKADCHFLCTGK  233 (369)
Q Consensus       176 -------~~~~-~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~--~g-~~i~~d~vi~a~G~  233 (369)
                             .+++ .+...+.+.+++.|+++++++.+..+..+++.+ .|++.  +| .++.++.+|-|||.
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   79 YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                   0111 112234556667899999999999988776432 33333  23 57999999999995

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.09  E-value=0.00052  Score=61.72  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             CCCcceEEEECCChHHHHHHHHccc-CCcEEEEcCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~   44 (369)
                      .....||+|||||.+|-+.|+.|.+ |.+|.+|||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            3456899999999999999999975 9999999985

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.08  E-value=0.00057  Score=66.47  Aligned_cols=34  Identities=32%  Similarity=0.586  Sum_probs=30.6

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~   46 (369)
                      ...||||||+|.||++||.+++ +.+|+||||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa-~~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA-PRPVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC-cCCEEEEECCCC
Confidence            4689999999999999999987 679999999864

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.08  E-value=0.00066  Score=59.57  Aligned_cols=103  Identities=20%  Similarity=0.242  Sum_probs=65.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--ccC---CcchHHH-----HHHHHHhCCcEEEeCceeeec
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EFI---GPKAGDK-----TLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~~~---~~~~~~~-----~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      --.++|+|||.-|+-+|..+.++.+.-+|.++++.+.-.  |.+   ...+...     -+..+--.|.+.+. .+|.+.
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~f  117 (446)
T KOG3851|consen   39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKEF  117 (446)
T ss_pred             ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHhc
Confidence            457999999999999999999877778999999876421  111   0001000     00111112222222 345555


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhc
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLK  241 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~  241 (369)
                      ..+.  -+|.+.+|++|.+|.+|+|+|..-+.+.+.
T Consensus       118 ~P~~--N~v~t~gg~eIsYdylviA~Giql~y~~Ik  151 (446)
T KOG3851|consen  118 NPDK--NTVVTRGGEEISYDYLVIAMGIQLDYGKIK  151 (446)
T ss_pred             CCCc--CeEEccCCcEEeeeeEeeeeeceeccchhc
Confidence            4433  467888999999999999999976655443

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.07  E-value=0.0049  Score=61.16  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ....+|+|||||+.|+-+|..|++  .|.+|+++++.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence            456789999999999999999985  489999999864

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.05  E-value=0.00063  Score=66.26  Aligned_cols=37  Identities=32%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ...++||||||||.|||.||.+++ .|.+|+|+||...
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~   40 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP   40 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            445789999999999999999986 6899999999764

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.04  E-value=0.00051  Score=67.79  Aligned_cols=53  Identities=19%  Similarity=0.166  Sum_probs=39.9

Q ss_pred             CCCcEEeCCceeeccCCCeEEecccCCccc-------cchhHHHHHHHHHHHHHHHHHhhC
Q 046865          251 TDGMLMVDENLRVKGQKNIFAIGDITDIRE-------IKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       251 ~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~-------~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ..|.|.||.+.|+ +.|++||+|+|++...       -.....|.-.|++|+++++..+.+
T Consensus       357 t~GGi~vd~~~~t-~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~  416 (582)
T PRK09231        357 TMGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT  416 (582)
T ss_pred             eCCCEEECCCCcc-ccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence            3588999999998 6999999999974211       112345777899999999876643

>PLN02785 Protein HOTHEAD

Probab=97.01  E-value=0.00079  Score=66.26  Aligned_cols=36  Identities=28%  Similarity=0.430  Sum_probs=32.5

Q ss_pred             CCcceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~   46 (369)
                      ...||+||||||.||+.+|.+|..+.+|+|||++..
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence            346999999999999999999987899999999863

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.99  E-value=0.0029  Score=58.82  Aligned_cols=83  Identities=24%  Similarity=0.202  Sum_probs=63.0

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CCcc------hHHHHHHHHHhCCcEEEeCce
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGPK------AGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~~~------~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      ..++++|||||..|++.|.+|++  .|.+|+|+++.+.+...       |+..      +...+.+.-...+|++++.++
T Consensus       123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae  200 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAE  200 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeee
Confidence            36899999999999999999996  49999999998876432       2221      334455555567899999999


Q ss_pred             eeeccCCCCCeEEEcCCC
Q 046865          202 VNLDSVSEGSDTYLTSTG  219 (369)
Q Consensus       202 v~~i~~~~~~~~v~~~~g  219 (369)
                      |++++..-+.++|+....
T Consensus       201 V~ev~G~vGnF~vki~kk  218 (622)
T COG1148         201 VEEVSGSVGNFTVKIEKK  218 (622)
T ss_pred             eeeecccccceEEEEecc
Confidence            999987666677766544

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=96.98  E-value=0.00081  Score=61.38  Aligned_cols=40  Identities=25%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             CCcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCcccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEIT   50 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~   50 (369)
                      ...++|+|+|||.+||++|++|++   ...|+|+|..+..|..
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw   51 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW   51 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence            346899999999999999999964   5667889999988854

>PLN03000 amine oxidase

Probab=96.97  E-value=0.00084  Score=67.86  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=35.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      ..++|+|||||++|+.||..|+ .|++|+|+|+++..|...
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi  223 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV  223 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence            4689999999999999999997 499999999999888543

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.96  E-value=0.0044  Score=53.41  Aligned_cols=99  Identities=25%  Similarity=0.289  Sum_probs=67.5

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc----------C----------C-------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------I----------G-------------------  178 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~----------~----------~-------------------  178 (369)
                      +|+|||+|..|+-.|..|+.  .|.+|++++++..+...          +          +                   
T Consensus         3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W   80 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW   80 (331)
T ss_pred             cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence            68999999999999999985  49999999987322100          0          0                   


Q ss_pred             ------------------------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC-cEEeccEEEEcCCC
Q 046865          179 ------------------------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG-DTIKADCHFLCTGK  233 (369)
Q Consensus       179 ------------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~d~vi~a~G~  233 (369)
                                              +.++ .+.+.| ....++.++++|+++...++.-++.+++| +...+|.|+++...
T Consensus        81 ~~~~~~~~~~~~~~~~d~~pyvg~pgms-alak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380          81 TPAVWTFTGDGSPPRGDEDPYVGEPGMS-ALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             cccccccccCCCCCCCCCCccccCcchH-HHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCC
Confidence                                    1111 122222 23467788888888877777778888665 57889999999765


Q ss_pred             CCCchhh
Q 046865          234 PVGSDWL  240 (369)
Q Consensus       234 ~p~~~~l  240 (369)
                      .....+|
T Consensus       159 PQ~~~LL  165 (331)
T COG3380         159 PQTATLL  165 (331)
T ss_pred             Ccchhhc
Confidence            4333343

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.94  E-value=0.00078  Score=71.75  Aligned_cols=37  Identities=32%  Similarity=0.514  Sum_probs=32.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ..+||||||+|.||++||.+++ .|.+|+|+||.+..+
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G  445 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG  445 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            4689999999999999999876 699999999987654

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.93  E-value=0.0022  Score=65.15  Aligned_cols=90  Identities=17%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      ..+++|.|||+||.|+-.|..|.+  .|..|++++|++++..         .+|+.+.+.-.+.|.+.||++++|+.|-.
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk 1860 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK 1860 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc
Confidence            346999999999999999999984  5999999999998632         24666777777889999999999987742


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      -        +. -|+-.-+.|.+|+|+|..
T Consensus      1861 ~--------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1861 H--------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred             c--------cc-HHHHhhccCeEEEEeCCC
Confidence            1        11 122234678999999975

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.92  E-value=0.0029  Score=62.97  Aligned_cols=36  Identities=11%  Similarity=0.198  Sum_probs=31.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ..+|+|||||+.|+..|..|. .|.+|+|||+.+.+.
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll  348 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL  348 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence            468999999999999998876 599999999987643

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.002  Score=57.36  Aligned_cols=99  Identities=29%  Similarity=0.294  Sum_probs=74.1

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEE-cC-c---------ccc---ccCCcchHHHHHHHHHhCCcEEEeC
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVH-KG-S---------RLL---EFIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~-~~-~---------~~l---~~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      +.+-.++||||||.|...|-+-+  +.|.+.-++. |- .         .+.   ....|++...++++.++..|+++..
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaA--RKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~  286 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAA--RKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL  286 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHH--hhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence            45678999999999988887655  3355544432 11 0         111   1356789999999999999999988


Q ss_pred             ceeeeccCC---CCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          200 QRVNLDSVS---EGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       200 ~~v~~i~~~---~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .+.+.++..   ++-..+++.+|..+.+..+|++||.+
T Consensus       287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             hhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence            887777653   34578999999999999999999965

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.90  E-value=0.0094  Score=56.12  Aligned_cols=32  Identities=28%  Similarity=0.548  Sum_probs=27.7

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      +|+|||+||.|+-+|..+++  .|.+|.++++.+
T Consensus         2 ~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~   33 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLAS--AGIQTFLLERKP   33 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            68999999999999999884  488999998763

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN02546 glutathione reductase

Probab=96.89  E-value=0.002  Score=63.04  Aligned_cols=97  Identities=15%  Similarity=0.210  Sum_probs=57.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeee-
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINIT-   88 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-   88 (369)
                      ...+|+|||||+.|+..|..|. .+.+|+|+++.+.+...       .++.........+.  ..+++++.+ .+..+. 
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-------~d~~~~~~l~~~L~--~~GV~i~~~~~v~~i~~  321 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-------FDEEVRDFVAEQMS--LRGIEFHTEESPQAIIK  321 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-------cCHHHHHHHHHHHH--HCCcEEEeCCEEEEEEE
Confidence            3579999999999999998886 58999999987653211       11111000000000  124555432 233332 


Q ss_pred             --cc--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865           89 --EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        89 --~~--~v~~~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                        ..  .+...++....+|.+++|+|..|+...
T Consensus       322 ~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~  354 (558)
T PLN02546        322 SADGSLSLKTNKGTVEGFSHVMFATGRKPNTKN  354 (558)
T ss_pred             cCCCEEEEEECCeEEEecCEEEEeeccccCCCc
Confidence              11  233334444558999999999987653

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=96.89  E-value=7.4e-05  Score=56.54  Aligned_cols=52  Identities=27%  Similarity=0.342  Sum_probs=38.6

Q ss_pred             CCcEEEEeecCCCce--------EEcCcc-----cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          316 HSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       316 ~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +|+++.+|+++.++.        ...++.     ...+...+++|+  ++++++++|||+|++|.||
T Consensus         8 ~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~d~~t~~IlGa~~vg~~a   72 (110)
T PF02852_consen    8 DPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKL--IFDKKTGRILGAQIVGPNA   72 (110)
T ss_dssp             SSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEE--EEETTTTBEEEEEEEETTH
T ss_pred             CCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEE--EEEeeccceeeeeeecCch
Confidence            689999999876653        222221     144557899999  9999999999999999764

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.82  E-value=0.012  Score=55.05  Aligned_cols=37  Identities=16%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~~  173 (369)
                      .+|+|||+|++|+.+|..|.+..... .|+++++.+++
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            47999999999999999998643333 38999887544

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.82  E-value=0.0014  Score=64.67  Aligned_cols=38  Identities=32%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ..+||||||+|.+|++||..++ .|.+|+||||++..+.
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg   53 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG   53 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            4689999999999999999886 5999999999877654

>PLN02976 amine oxidase

Probab=96.77  E-value=0.0014  Score=69.06  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=35.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      ..++|+|||||++|+++|+.|. .|++|+|+|+++.+|..+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri  732 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV  732 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence            4589999999999999999996 599999999998887543

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.76  E-value=0.0015  Score=63.82  Aligned_cols=63  Identities=14%  Similarity=0.041  Sum_probs=43.8

Q ss_pred             HHHHHHHHhCCcEEEeCceeeeccCCCCC---eEEEcCCC---c-EEeccEEEEcCCCCCCchhhccccc
Q 046865          183 DKTLDWLISKKVDVKLGQRVNLDSVSEGS---DTYLTSTG---D-TIKADCHFLCTGKPVGSDWLKDTIL  245 (369)
Q Consensus       183 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g---~-~i~~d~vi~a~G~~p~~~~l~~~~~  245 (369)
                      ..+...++..++++.+++.+.++..+++.   +.+...++   + ...++.||+|+|...+..+|..++.
T Consensus       207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi  276 (542)
T COG2303         207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI  276 (542)
T ss_pred             hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence            34444567778999999999998876653   23333333   1 3578899999999876666666654

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.72  E-value=0.016  Score=55.41  Aligned_cols=95  Identities=17%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------------cc--C-------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------EF--I-------------------------  177 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------------~~--~-------------------------  177 (369)
                      -+|+|||||+.|.-+|..|++  .|.+|.++++.+...            ..  .                         
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~  117 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAK--GGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG  117 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence            479999999999999988874  488888888763210            00  0                         


Q ss_pred             ------------C-cchHHHHHHHHHhCCcEEEeCceeeeccCC---CCCeEEEcCC-------C--cEEeccEEEEcCC
Q 046865          178 ------------G-PKAGDKTLDWLISKKVDVKLGQRVNLDSVS---EGSDTYLTST-------G--DTIKADCHFLCTG  232 (369)
Q Consensus       178 ------------~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~---~~~~~v~~~~-------g--~~i~~d~vi~a~G  232 (369)
                                  + ..+-+.+.+.+.+.|++++.++ +..++..   ++.+.+++.+       |  .++++|.||-|.|
T Consensus       118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~-v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG  196 (450)
T PLN00093        118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGL-FTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG  196 (450)
T ss_pred             ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEece-EEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence                        0 0122345556677899998764 5555421   2334444321       3  4799999999999


Q ss_pred             CC
Q 046865          233 KP  234 (369)
Q Consensus       233 ~~  234 (369)
                      ..
T Consensus       197 ~~  198 (450)
T PLN00093        197 AN  198 (450)
T ss_pred             cc
Confidence            63

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.72  E-value=0.0059  Score=57.82  Aligned_cols=94  Identities=24%  Similarity=0.241  Sum_probs=62.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc------------------------------------------c
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL------------------------------------------L  174 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~------------------------------------------l  174 (369)
                      -.|+|||||..|+|.|..-+  +.|.++.+++....-                                          |
T Consensus         5 ~DVIVIGgGHAG~EAA~AaA--RmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L   82 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAA--RMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML   82 (621)
T ss_pred             CceEEECCCccchHHHHhhh--ccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence            46899999999999998766  568888877754111                                          0


Q ss_pred             cc------------CCc-chHHHHHHHHHh-CCcEEEeCceeeeccCCCC--CeEEEcCCCcEEeccEEEEcCCC
Q 046865          175 EF------------IGP-KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEG--SDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       175 ~~------------~~~-~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ..            .|. .....+++.++. .++.++.++ |.++..+++  ...|.+.+|..+.|+.||++||.
T Consensus        83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence            00            011 123334445543 477777664 444444343  36788999999999999999986

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.71  E-value=0.0011  Score=65.59  Aligned_cols=50  Identities=18%  Similarity=0.023  Sum_probs=37.2

Q ss_pred             CCcEEeCCceeeccCCCeEEecccCCccc--c----chhHHHHHHHHHHHHHHHHHh
Q 046865          252 DGMLMVDENLRVKGQKNIFAIGDITDIRE--I----KQGFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       252 ~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~----~~~~~A~~~g~~~a~~i~~~~  302 (369)
                      .|.|.+|...+| +.|++||+|+|++...  -    .....+.-.|+.|+++++..+
T Consensus       370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~  425 (603)
T TIGR01811       370 MGGLWVDYDQMT-NIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY  425 (603)
T ss_pred             CCCeeECCCCcc-cCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999998 6999999999975321  0    122456778888988887654

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.61  E-value=0.00058  Score=56.31  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=29.9

Q ss_pred             cceEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYF   47 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~   47 (369)
                      ..||||||+|.+||+||+.+.   .+.+|.+||.+-..
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP  113 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP  113 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence            359999999999999999885   38999999987443

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=96.49  E-value=0.018  Score=48.34  Aligned_cols=99  Identities=20%  Similarity=0.127  Sum_probs=61.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------C-------------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------I-------------------------------  177 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~-------------------------------  177 (369)
                      ...++|+|+|++|+-+|..|++.  +.+|.+++++..+...       |                               
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d   94 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVAD   94 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-
T ss_pred             cCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEc
Confidence            46799999999999999999975  9999999987433210       0                               


Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeE-EEc------CCC-----cEEeccEEEEcCCCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDT-YLT------STG-----DTIKADCHFLCTGKPVG  236 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~-v~~------~~g-----~~i~~d~vi~a~G~~p~  236 (369)
                      ..++...+....-+.|++++..+.|+++-..+ +.+. +..      ..|     -.+++..||-|||....
T Consensus        95 ~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen   95 SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence            01233344444555899999999998765444 3221 111      122     27899999999998654

>TIGR01810 betA choline dehydrogenase

Probab=96.48  E-value=0.0025  Score=62.44  Aligned_cols=63  Identities=11%  Similarity=-0.020  Sum_probs=41.6

Q ss_pred             HHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcC-CCc---EEeccEEEEcCCCCCCchhhcccccC
Q 046865          184 KTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTS-TGD---TIKADCHFLCTGKPVGSDWLKDTILK  246 (369)
Q Consensus       184 ~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~-~g~---~i~~d~vi~a~G~~p~~~~l~~~~~~  246 (369)
                      .+....++.|++|++++.|.+|..+++ ...|++. ++.   .+.++.||+|.|.--...+|..++++
T Consensus       199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG  266 (532)
T TIGR01810       199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG  266 (532)
T ss_pred             HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence            344444467899999999999876544 2234432 222   35899999999975455666655553

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.46  E-value=0.0036  Score=55.44  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ...||+|||+|.|||.||.+|+ .|.+|+++|++..
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            3689999999999999999987 6999999998753

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.42  E-value=0.025  Score=56.54  Aligned_cols=98  Identities=27%  Similarity=0.414  Sum_probs=66.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-----------------------------------CC--
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------------------------------IG--  178 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-----------------------------------~~--  178 (369)
                      .-+|+|||+|++|+-+|..|++ +.|.+|+++++.+.....                                   ..  
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar-~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~  110 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSA-FPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD  110 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhc-CCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence            4579999999999999999984 248888888876321000                                   00  


Q ss_pred             ------------------------------cchHHHHHHHHHhCC--cEEEeCceeeeccCCC---CCeEEEcC------
Q 046865          179 ------------------------------PKAGDKTLDWLISKK--VDVKLGQRVNLDSVSE---GSDTYLTS------  217 (369)
Q Consensus       179 ------------------------------~~~~~~~~~~l~~~g--v~i~~~~~v~~i~~~~---~~~~v~~~------  217 (369)
                                                    ..+.+.+.+.+++.+  +++..+++++.++.++   ..+++++.      
T Consensus       111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~  190 (634)
T PRK08294        111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH  190 (634)
T ss_pred             CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence                                          012333455565555  5778899998887543   23666653      


Q ss_pred             CC--cEEeccEEEEcCCCC
Q 046865          218 TG--DTIKADCHFLCTGKP  234 (369)
Q Consensus       218 ~g--~~i~~d~vi~a~G~~  234 (369)
                      +|  +++++|+||-|-|.+
T Consensus       191 ~g~~~tv~A~~lVGaDGa~  209 (634)
T PRK08294        191 EGEEETVRAKYVVGCDGAR  209 (634)
T ss_pred             CCceEEEEeCEEEECCCCc
Confidence            35  479999999999974

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.38  E-value=0.006  Score=55.62  Aligned_cols=97  Identities=22%  Similarity=0.304  Sum_probs=64.5

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHH--------------------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT--------------------------------  185 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~--------------------------------  185 (369)
                      ..+|+|+|..+.-....+..+-++.+|.++...+++ |.+-|.+++.+                                
T Consensus       180 p~liigggtaAfaa~rai~s~da~A~vl~iseepel-PYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ff  258 (659)
T KOG1346|consen  180 PYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL-PYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFF  258 (659)
T ss_pred             ceeEEcCCchhhhcccccccCCCCceEEeeccCccC-cccCCCcchhceecCCCChhhheeecccCCccceeEecCCcce
Confidence            468999997766555555544456677777655432 32222222222                                


Q ss_pred             -----HHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          186 -----LDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       186 -----~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                           ......-||-+..+.+|..+..++  ..|++.||.+|.+|.+++|||.+|..
T Consensus       259 vspeDLp~~~nGGvAvl~G~kvvkid~~d--~~V~LnDG~~I~YdkcLIATG~~Pk~  313 (659)
T KOG1346|consen  259 VSPEDLPKAVNGGVAVLRGRKVVKIDEED--KKVILNDGTTIGYDKCLIATGVRPKK  313 (659)
T ss_pred             eChhHCcccccCceEEEeccceEEeeccc--CeEEecCCcEeehhheeeecCcCccc
Confidence                 112233588899999988876544  35788999999999999999999854

>PLN02985 squalene monooxygenase

Probab=96.38  E-value=0.034  Score=54.09  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=26.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~  170 (369)
                      ..+++|||+|+.|+-+|..|++  .|.+|+++++.
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~   75 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAK--DGRRVHVIERD   75 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHH--cCCeEEEEECc
Confidence            3578999999999999988874  47888888875

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.34  E-value=0.015  Score=59.47  Aligned_cols=35  Identities=31%  Similarity=0.542  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      +|+|||+|+.|+-+|..|++..++.+|+++++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            68999999999999998886445899999998764

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.33  E-value=0.0034  Score=56.60  Aligned_cols=101  Identities=14%  Similarity=0.178  Sum_probs=59.9

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINIT   88 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   88 (369)
                      .-+++++|||||+-||..+.--. .|.+||+||--+.++..       +++++... +.+... -.+..|..+ .+...+
T Consensus       209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-------mD~Eisk~-~qr~L~-kQgikF~l~tkv~~a~  279 (506)
T KOG1335|consen  209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-------MDGEISKA-FQRVLQ-KQGIKFKLGTKVTSAT  279 (506)
T ss_pred             hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-------cCHHHHHH-HHHHHH-hcCceeEeccEEEEee
Confidence            34689999999999999986554 59999999987766532       12211110 000000 023444322 222222


Q ss_pred             cc-----eEEec-----CCeEEeccEEEEccCCCCCCCCChH
Q 046865           89 EN-----EVLTA-----EGRRVVYDYLVIATGHKDPVPKTRT  120 (369)
Q Consensus        89 ~~-----~v~~~-----~g~~~~~d~lviAtG~~~~~p~~~~  120 (369)
                      ++     .+.+.     ..+++++|.|.+++|.+|...++..
T Consensus       280 ~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgl  321 (506)
T KOG1335|consen  280 RNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGL  321 (506)
T ss_pred             ccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCCh
Confidence            11     22222     1257999999999999998877643

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.27  E-value=0.0048  Score=59.62  Aligned_cols=38  Identities=26%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             CCCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCCc
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~~   47 (369)
                      ....||.||||||.||...|.+|+.  .++|+|+|++...
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            3457999999999999999999985  5999999998654

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.23  E-value=0.028  Score=53.24  Aligned_cols=33  Identities=42%  Similarity=0.659  Sum_probs=27.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      .|+|||+|..|+-.|..+++  .|.+|.++++.+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecc
Confidence            48999999999999999886  4889999999875

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.13  E-value=0.0026  Score=59.86  Aligned_cols=38  Identities=21%  Similarity=0.388  Sum_probs=33.1

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ...+||+|||||..|..||.-++ +|+++.|+|+++.-.
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~S  103 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFAS  103 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccC
Confidence            34599999999999999998775 899999999998644

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.00  E-value=0.014  Score=39.64  Aligned_cols=33  Identities=33%  Similarity=0.419  Sum_probs=28.1

Q ss_pred             EEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc
Q 046865          141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (369)
Q Consensus       141 vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~  175 (369)
                      |||+|.+|+-+|..|++.  +.+|+++++.+++..
T Consensus         1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccCc
Confidence            799999999999999864  899999999987643

...

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.99  E-value=0.035  Score=53.22  Aligned_cols=83  Identities=22%  Similarity=0.270  Sum_probs=58.7

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..++++|+|+|.+|..+|..|.+  .|.+|+++++.+.      +.+ +...+.+.+.|++++.+.....          
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~~----------   64 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPEE----------   64 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcchh----------
Confidence            35889999999999999999985  4999999987642      122 3333456777888766543320          


Q ss_pred             EcCCCcEEeccEEEEcCCCCCCchhhc
Q 046865          215 LTSTGDTIKADCHFLCTGKPVGSDWLK  241 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~p~~~~l~  241 (369)
                           ..-.+|.||.++|..|+.+.+.
T Consensus        65 -----~~~~~d~vv~~~g~~~~~~~~~   86 (450)
T PRK14106         65 -----FLEGVDLVVVSPGVPLDSPPVV   86 (450)
T ss_pred             -----HhhcCCEEEECCCCCCCCHHHH
Confidence                 0124799999999988776553

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=95.98  E-value=0.0055  Score=56.47  Aligned_cols=55  Identities=5%  Similarity=-0.078  Sum_probs=47.3

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .++..+.+-+++.|-+|.++..|.+|-.+++ .+.|.+.||+++.+..|+.-++..
T Consensus       265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~  320 (561)
T KOG4254|consen  265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPW  320 (561)
T ss_pred             HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchH
Confidence            7888999999999999999999999877665 467889999999998888877654

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.98  E-value=0.029  Score=51.93  Aligned_cols=67  Identities=22%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             EEcCcccccc--CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC-cEEeccEEEEcCCCCC
Q 046865          167 VHKGSRLLEF--IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG-DTIKADCHFLCTGKPV  235 (369)
Q Consensus       167 v~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~d~vi~a~G~~p  235 (369)
                      .++..++.|.  -..++.+.+.+.+++.||+|+++++|..++  ++...+.+.++ .++.+|.||+|||-.+
T Consensus        72 ~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        72 VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            4556677773  344788999999999999999999999982  33456665433 4699999999999754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.96  E-value=0.01  Score=57.40  Aligned_cols=34  Identities=41%  Similarity=0.561  Sum_probs=29.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|+|||+|.+|+++|..|+ +|++|+++|+++
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3568999999999999998886 699999999765

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=95.84  E-value=0.082  Score=52.39  Aligned_cols=53  Identities=15%  Similarity=0.065  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeE----EEcCCCc--EEeccEEEEcCCC
Q 046865          181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDT----YLTSTGD--TIKADCHFLCTGK  233 (369)
Q Consensus       181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~----v~~~~g~--~i~~d~vi~a~G~  233 (369)
                      +...+.+.+.+ .+|+++.++.+.++..+++.+.    +...+|+  .+.++.||+|||-
T Consensus       135 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  194 (582)
T PRK09231        135 MLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG  194 (582)
T ss_pred             HHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence            44445555544 3799999999888765544322    2345663  6889999999985

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=95.82  E-value=0.009  Score=54.54  Aligned_cols=32  Identities=34%  Similarity=0.535  Sum_probs=28.9

Q ss_pred             cceEEEECCChHHHHHHHHccc-----CCcEEEEcCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPK   44 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-----g~~V~lie~~   44 (369)
                      .+||||||||+.|++.|..|..     .++|.|+|-.
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            7999999999999999999862     6899999987

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.82  E-value=0.03  Score=52.14  Aligned_cols=32  Identities=25%  Similarity=0.457  Sum_probs=26.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~  170 (369)
                      -.|+|||||..|+|.|.+-+  +.|.+.++++.+
T Consensus        29 ~dVvVIGgGHAG~EAAaAaa--R~Ga~TlLlT~~   60 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAA--RLGARTLLLTHN   60 (679)
T ss_pred             ccEEEECCCccchHHHHHHH--hcCCceEEeecc
Confidence            47999999999999998766  458887777654

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.73  E-value=0.011  Score=55.68  Aligned_cols=57  Identities=12%  Similarity=-0.061  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ++.+.+-+...-.|-.+.+++.|.++..++++ ..-...+|+++.|+.||....+-|+
T Consensus       233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~  290 (438)
T PF00996_consen  233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPE  290 (438)
T ss_dssp             HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGC
T ss_pred             cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcc
Confidence            78888888888889999999999998764333 2212357889999999988777663

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK07121 hypothetical protein; Validated

Probab=95.73  E-value=0.1  Score=50.70  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=38.3

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEc-CCCc--EEec-cEEEEcCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLT-STGD--TIKA-DCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~-~~g~--~i~~-d~vi~a~G~  233 (369)
                      .+.+.+.+.+++.|++++++++++++..++ +.+ .+.. .+++  .+.+ +.||+|||-
T Consensus       178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg  237 (492)
T PRK07121        178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG  237 (492)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence            456677778888999999999999886543 222 2332 2333  5778 999999994

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=95.59  E-value=0.062  Score=48.75  Aligned_cols=88  Identities=18%  Similarity=0.090  Sum_probs=62.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc--------c--CCcchHHHHHHHHHhCCcEEEeCceee-ec
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--------F--IGPKAGDKTLDWLISKKVDVKLGQRVN-LD  205 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~--------~--~~~~~~~~~~~~l~~~gv~i~~~~~v~-~i  205 (369)
                      .++.|||+||.|+-.|.-|.++.++..|+++++.+....        .  .-+-+.+.+.+.++.....++.|..|- .+
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~dv  100 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRDV  100 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecccc
Confidence            389999999999999999887667899999999875432        1  122345667778888888888887762 22


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .         +.+ -+-.+|.|++|.|..
T Consensus       101 s---------l~e-L~~~ydavvLaYGa~  119 (468)
T KOG1800|consen  101 S---------LKE-LTDNYDAVVLAYGAD  119 (468)
T ss_pred             c---------HHH-HhhcccEEEEEecCC
Confidence            1         110 023578888888864

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=95.55  E-value=0.02  Score=56.97  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=30.6

Q ss_pred             cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~   46 (369)
                      .+||||||||.||++||.+++.   |.+|+||||.+.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            5799999999999999999864   899999999764

>PTZ00367 squalene epoxidase; Provisional

Probab=95.53  E-value=0.11  Score=51.25  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=29.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .-+|+|||||+.|+-+|..|++  .|.+|+++++.+
T Consensus        33 ~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence            3479999999999999999985  488999999864

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.51  E-value=0.019  Score=53.74  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      +..+...+.+.+++ |++++.++.|..++.+++.+.+++.+|+.+.+|.||+|+|...
T Consensus       134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence            34777888888888 9999999999998766666778888887799999999999753

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=95.50  E-value=0.074  Score=48.86  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=28.6

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+|+|+|||..|+-.|..|.+  .|.+|.+++...
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e   35 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHR--KGIDVVVLESRE   35 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecc
Confidence            579999999999999999984  589999998764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.39  E-value=0.059  Score=49.30  Aligned_cols=32  Identities=28%  Similarity=0.508  Sum_probs=28.6

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|.|||.|+.||..|.-|+ .|++|+.+|..+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            47999999999999998886 589999999865

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.38  E-value=0.0082  Score=52.17  Aligned_cols=41  Identities=34%  Similarity=0.567  Sum_probs=33.5

Q ss_pred             cCCCcceEEEECCChHHHHHHHHccc-------CCcEEEEcCCCCccc
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKEYFEI   49 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~~-------g~~V~lie~~~~~~~   49 (369)
                      ++...++|+|||||..|.++|+.|.+       ...|+|+|+...-+.
T Consensus         6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g   53 (380)
T KOG2852|consen    6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG   53 (380)
T ss_pred             ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence            34456899999999999999999962       278999999876553

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=95.24  E-value=0.12  Score=48.72  Aligned_cols=53  Identities=21%  Similarity=0.193  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHh-CCcEEEeCceeeeccCCCC-Ce-EEEc--CCC--cEEeccEEEEcCCC
Q 046865          181 AGDKTLDWLIS-KKVDVKLGQRVNLDSVSEG-SD-TYLT--STG--DTIKADCHFLCTGK  233 (369)
Q Consensus       181 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~-~~-~v~~--~~g--~~i~~d~vi~a~G~  233 (369)
                      +...+.+..++ .+|+++.++.+.++..+++ .+ .+.+  .++  .++.++.||+|||-
T Consensus       135 I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG  194 (518)
T COG0029         135 IMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG  194 (518)
T ss_pred             HHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence            34444555544 5899999988877766655 33 3333  222  46889999999984

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.22  E-value=0.045  Score=50.24  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      .|+|||||+.|+-+|..|++  .|.+|+++++.+...
T Consensus         3 dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~~   37 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSCC
T ss_pred             eEEEECCCHHHHHHHHHHHh--cccccccchhccccc
Confidence            58999999999999999985  489999999987654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.03  E-value=0.044  Score=50.30  Aligned_cols=100  Identities=18%  Similarity=0.159  Sum_probs=56.2

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc-------ccc-------C-------C------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-------LEF-------I-------G------------------  178 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~-------l~~-------~-------~------------------  178 (369)
                      .++.||.||..+-+|..+.+. ...++.++++.+.+       ++.       +       +                  
T Consensus         4 D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~   82 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLY   82 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HH
T ss_pred             eEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChh
Confidence            578999999999999988764 36788888876543       110       0       0                  


Q ss_pred             ------------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC----eEEEcC----CCcEEeccEEEEcCCCCCCch
Q 046865          179 ------------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS----DTYLTS----TGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       179 ------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~----~~v~~~----~g~~i~~d~vi~a~G~~p~~~  238 (369)
                                  .++.++++-..++..-.+..+++|+.|+..++.    ..|.+.    +++++.|+.|++++|..|..+
T Consensus        83 ~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   83 EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred             hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence                        122233333333445448889999998765432    566662    346899999999999887654

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=95.02  E-value=0.054  Score=49.54  Aligned_cols=56  Identities=16%  Similarity=0.058  Sum_probs=46.6

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      +..+...+.+.+++.|++++.+++|..++.+++.+ .+.+.+| ++.+|.||+|+|..
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~  192 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAW  192 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence            45788889999999999999999999988765543 4566666 79999999999965

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.89  E-value=0.029  Score=48.22  Aligned_cols=32  Identities=38%  Similarity=0.634  Sum_probs=29.3

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++++|||+|..|.+.|..|. .|++|++||+++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            47999999999999999996 589999999975

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.85  E-value=0.14  Score=43.36  Aligned_cols=78  Identities=12%  Similarity=0.030  Sum_probs=51.2

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..++++|||||.+|..-+..|.+  .|.+|+++.+..          .+.+.+..++.+++++.+..-            
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~----------~~~l~~l~~~~~i~~~~~~~~------------   63 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEEL----------ESELTLLAEQGGITWLARCFD------------   63 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCC----------CHHHHHHHHcCCEEEEeCCCC------------
Confidence            35799999999999999988885  489999997532          234444444445665543211            


Q ss_pred             EcCCCcEEeccEEEEcCCCC-CCchh
Q 046865          215 LTSTGDTIKADCHFLCTGKP-VGSDW  239 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~-p~~~~  239 (369)
                         .+.--.+++||.|||.. .|...
T Consensus        64 ---~~dl~~~~lVi~at~d~~ln~~i   86 (205)
T TIGR01470        64 ---ADILEGAFLVIAATDDEELNRRV   86 (205)
T ss_pred             ---HHHhCCcEEEEECCCCHHHHHHH
Confidence               01112478999999986 44443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.83  E-value=0.032  Score=41.47  Aligned_cols=34  Identities=44%  Similarity=0.625  Sum_probs=28.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|+|||||..|..-+..|. .|.+|+++.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4679999999999999998875 599999999864

>PRK05868 hypothetical protein; Validated

Probab=94.80  E-value=0.055  Score=50.43  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=38.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv  194 (369)
                      ++|+|+|||+.|+-+|..|++  .|.+|+++++.+.+... ..-.+.....+.|++.|+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl   58 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGL   58 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCC
Confidence            479999999999999999984  48999999998765321 111222333455555553

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=94.72  E-value=0.045  Score=51.28  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ++|+|||||++|+|+|..|++  .|.+|+++++.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCcc
Confidence            579999999999999999985  49999999976554

>PRK06184 hypothetical protein; Provisional

Probab=94.69  E-value=0.066  Score=52.11  Aligned_cols=56  Identities=30%  Similarity=0.363  Sum_probs=39.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv  194 (369)
                      -+|+|||+|++|+-+|..|++  .|.+|+++++.+.+... -...+.....+.|++.|+
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl   60 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGV   60 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCc
Confidence            469999999999999999984  49999999998765331 111233344445555554

>PRK06475 salicylate hydroxylase; Provisional

Probab=94.67  E-value=0.072  Score=50.21  Aligned_cols=56  Identities=30%  Similarity=0.315  Sum_probs=40.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv  194 (369)
                      ++|+|||||+.|+-+|..|++  .|.+|+++++.+.+.. ...-.+.....+.|++.|+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl   59 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGV   59 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCcCCccceeChhHHHHHHHCCC
Confidence            689999999999999999974  5899999999875432 1111233455555666554

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=94.66  E-value=0.07  Score=50.07  Aligned_cols=56  Identities=32%  Similarity=0.393  Sum_probs=44.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC-cccccc-CCcchHHHHHHHHHhCCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRLLEF-IGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~-~~~l~~-~~~~~~~~~~~~l~~~gv  194 (369)
                      .+|+|+|||+.|+-+|..|++  .|.+|+++++. +.+.+. -.-.+.....+.|++.|+
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~   60 (387)
T COG0654           3 LDVAIVGAGPAGLALALALAR--AGLDVTLLERAPRELLERGRGIALSPNALRALERLGL   60 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence            579999999999999999984  58999999998 344332 233566777788888887

>PRK06847 hypothetical protein; Provisional

Probab=94.62  E-value=0.084  Score=49.18  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ..+|+|||+|+.|+-+|..|++  .|.+|+++++.+.+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~~   39 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPEW   39 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCC
Confidence            5689999999999999999984  48999999988653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.61  E-value=0.04  Score=44.49  Aligned_cols=31  Identities=35%  Similarity=0.476  Sum_probs=28.3

Q ss_pred             eEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +|.|||||..|.++|..|+ +|.+|+|..+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            5899999999999999986 689999999975

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK08163 salicylate hydroxylase; Provisional

Probab=94.49  E-value=0.077  Score=49.86  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=31.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      +.+|+|||+|+.|+-+|..|++  .|.+|+++++.+.+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~~~   39 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAAEI   39 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCccc
Confidence            5689999999999999999984  58999999998754

>TIGR02730 carot_isom carotene isomerase

Probab=94.48  E-value=0.094  Score=50.95  Aligned_cols=36  Identities=25%  Similarity=0.298  Sum_probs=32.8

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      +||||||||.+||++|..|+ +|++|+|+||++..|.
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG   37 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGG   37 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence            58999999999999999987 5999999999988764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK08244 hypothetical protein; Provisional

Probab=94.45  E-value=0.075  Score=51.59  Aligned_cols=35  Identities=31%  Similarity=0.628  Sum_probs=30.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ..|+|||+|++|+-+|..|.+  .|.+|+++++.+..
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~   37 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKET   37 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence            369999999999999999984  49999999998654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.40  E-value=0.056  Score=45.72  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=29.1

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .++|+|||||..|...+..|. .|.+|+||+++.
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            569999999999999998875 699999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08275 putative oxidoreductase; Provisional

Probab=94.33  E-value=0.081  Score=52.14  Aligned_cols=35  Identities=29%  Similarity=0.479  Sum_probs=30.7

Q ss_pred             CcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~   46 (369)
                      ..+||||||||.||++||.++++   |.+|+||||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            45899999999999999998863   689999999864

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=94.29  E-value=0.062  Score=51.45  Aligned_cols=34  Identities=35%  Similarity=0.544  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~  171 (369)
                      +|+|||||+.|.-.|..|++..+. .+|+++++..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~   35 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD   35 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence            589999999999999999987655 8999999875

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=94.20  E-value=0.11  Score=48.69  Aligned_cols=35  Identities=31%  Similarity=0.510  Sum_probs=30.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .+|+|||+|+.|+-+|..|++  .|.+|+++++.+..
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~~   42 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPPY   42 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCCC
Confidence            479999999999999999984  48999999997643

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.18  E-value=0.073  Score=42.90  Aligned_cols=33  Identities=42%  Similarity=0.561  Sum_probs=28.5

Q ss_pred             CcceEEEECCChHHHHHHHHc-ccCCcEEEEcCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPK   44 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l-~~g~~V~lie~~   44 (369)
                      ..++|+|||||..|..-+..| ..|.+|+||++.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            467999999999999999877 469999999754

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=94.18  E-value=0.076  Score=50.19  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=34.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      .+++|||||.+|+-.|..|.++.|..+++++++++++.
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G   38 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG   38 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence            47999999999999999999988889999999987763

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.04  E-value=0.23  Score=41.93  Aligned_cols=74  Identities=18%  Similarity=0.193  Sum_probs=47.4

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..++++|||||.+|...+..|.+  .+.+|+++.+.          ..+.+.+.+....+.+...    .          
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~----------~~~~l~~l~~~~~i~~~~~----~----------   62 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPE----------LTENLVKLVEEGKIRWKQK----E----------   62 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCC----------CCHHHHHHHhCCCEEEEec----C----------
Confidence            46899999999999999988875  37899999642          2334444444434444211    0          


Q ss_pred             EcCCCcEEeccEEEEcCCCCC
Q 046865          215 LTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~p  235 (369)
                       +....--.+|+||.||+..-
T Consensus        63 -~~~~~l~~adlViaaT~d~e   82 (202)
T PRK06718         63 -FEPSDIVDAFLVIAATNDPR   82 (202)
T ss_pred             -CChhhcCCceEEEEcCCCHH
Confidence             01111235799999988754

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.99  E-value=0.13  Score=48.59  Aligned_cols=57  Identities=19%  Similarity=0.221  Sum_probs=39.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC-C--cchHHHHHHHHHhCCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-G--PKAGDKTLDWLISKKV  194 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~-~--~~~~~~~~~~l~~~gv  194 (369)
                      ..+|+|||||+.|+-+|..|++  .|.+|+++++.+..-... +  -.+.....+.|++.|+
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl   77 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGV   77 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCCh
Confidence            3579999999999999999984  499999999987542110 1  1233344455555554

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.94  E-value=0.72  Score=41.64  Aligned_cols=73  Identities=21%  Similarity=0.183  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCC
Q 046865          182 GDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE  259 (369)
Q Consensus       182 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~  259 (369)
                      ....++.|.+.+|+++.+..-  + .+++.+.|...+|+  .+.+..+++|+|-+|..+-+....+  ..|++|++...+
T Consensus       113 ngIY~~~L~k~~V~~i~G~a~--f-~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~--gidSDgff~Lee  187 (478)
T KOG0405|consen  113 NGIYKRNLAKAAVKLIEGRAR--F-VSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAEL--GIDSDGFFDLEE  187 (478)
T ss_pred             HHHHHhhccccceeEEeeeEE--E-cCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhh--ccccccccchhh
Confidence            344566677788888877431  1 13456677777774  3789999999999987764433333  456677665543

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=93.92  E-value=0.15  Score=47.55  Aligned_cols=34  Identities=32%  Similarity=0.513  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRL  173 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~~~  173 (369)
                      .|+|||+|+.|+-+|..|++  .| .+|+++++.+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCcc
Confidence            48999999999999999984  58 999999998654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.87  E-value=0.14  Score=48.30  Aligned_cols=35  Identities=31%  Similarity=0.503  Sum_probs=29.9

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      +|+|||||+.|+-+|..|++..++.+|+++++.+.
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            58999999999999999985323589999999865

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.78  E-value=0.064  Score=44.55  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=25.3

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ++|.|||.|+.|+..|..|+ .|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            58999999999999999886 6999999998764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=93.77  E-value=0.06  Score=47.88  Aligned_cols=47  Identities=28%  Similarity=0.415  Sum_probs=36.7

Q ss_pred             eCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          257 VDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       257 vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      .|+.+|.++.||+|++|-+++.-..   ..+...|-+++.|.++...|..
T Consensus       325 L~~tl~lk~~p~l~fAGQitG~EGY---veSaA~Gllag~naa~~~~g~~  371 (439)
T COG1206         325 LDPTLQLKKRPNLFFAGQITGVEGY---VESAASGLLAGINAARLALGEE  371 (439)
T ss_pred             hhHHhhcccCCCcEEeeeeecchhh---hHHhhhhHHHhhHHHHHhcCCC
Confidence            4667888889999999999876431   3455678899999988887765

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=93.73  E-value=0.11  Score=47.85  Aligned_cols=41  Identities=29%  Similarity=0.352  Sum_probs=36.4

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      ....+++|+|||.+|+-+|..|+.+.+...|++++.++|+.
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG   49 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG   49 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence            34678999999999999999999888888999999998864

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=93.69  E-value=0.1  Score=49.03  Aligned_cols=35  Identities=26%  Similarity=0.585  Sum_probs=31.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      +|+|||||.+|+-+|..|+++.++.+|+++++.+.
T Consensus         4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            69999999999999999997666899999999753

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.68  E-value=0.54  Score=41.87  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             hcCCeEEEEcCCh-hHHHHHHHHhhhCCCCeEEEEEc
Q 046865          134 KSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHK  169 (369)
Q Consensus       134 ~~~~~v~vvG~G~-~g~e~a~~l~~~~~~~~v~lv~~  169 (369)
                      ..+++++|+|.|. .|--++..|..  .+..|+++++
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~--~gatVtv~~~  191 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLN--ANATVTICHS  191 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHh--CCCEEEEEeC
Confidence            4678999999996 99999998874  3779999986

>PRK07538 hypothetical protein; Provisional

Probab=93.67  E-value=0.13  Score=48.65  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      +|+|||||+.|+-+|..|++  .|.+|+++++.+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~   36 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPELR   36 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCccc
Confidence            68999999999999999885  489999999987543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.62  E-value=0.1  Score=44.03  Aligned_cols=33  Identities=39%  Similarity=0.711  Sum_probs=28.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~   44 (369)
                      ..++|+|||||-.|...+..|. .|.+|+||++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4579999999999999998775 68999999875

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=93.61  E-value=0.44  Score=43.55  Aligned_cols=32  Identities=28%  Similarity=0.545  Sum_probs=26.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~  170 (369)
                      -.++|||+|..|.-+|..|.+  .|.+|++++|+
T Consensus        46 ~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERD   77 (509)
T KOG1298|consen   46 ADVIIVGAGVAGSALAYALAK--DGRRVHVIERD   77 (509)
T ss_pred             ccEEEECCcchHHHHHHHHhh--CCcEEEEEecc
Confidence            458889999999999998884  48889999886

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=93.57  E-value=0.2  Score=46.06  Aligned_cols=35  Identities=37%  Similarity=0.694  Sum_probs=30.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ..++|||+|+.|+.+|...++  .|.+|+++++.+.+
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~   38 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKL   38 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccc
Confidence            468999999999999998874  59999999998654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.53  E-value=0.077  Score=51.02  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             eEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +|.|||.|.+|+++|+.|. +|++|+++|+++.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            5899999999999998885 6999999998764

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=93.51  E-value=0.47  Score=41.71  Aligned_cols=60  Identities=20%  Similarity=0.197  Sum_probs=43.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CCc-chHHHHHHHHHhCCcEEE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGP-KAGDKTLDWLISKKVDVK  197 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~~-~~~~~~~~~l~~~gv~i~  197 (369)
                      ..+++|||+|+.|+-+|..+++  .+.+|.++++.+.+...       ++. .+.....+.+++.|+.+.
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~   92 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK   92 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence            3579999999999999999874  58999999987654321       111 233455677777887654

>PRK09126 hypothetical protein; Provisional

Probab=93.51  E-value=0.16  Score=47.54  Aligned_cols=56  Identities=23%  Similarity=0.322  Sum_probs=40.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---ccCC-c--chHHHHHHHHHhCCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFIG-P--KAGDKTLDWLISKKV  194 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~~~~-~--~~~~~~~~~l~~~gv  194 (369)
                      -+|+|||||+.|+-+|..|++  .|.+|+++++.+..-   +... .  .+.....+.|++.|+
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl   65 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGA   65 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCC
Confidence            469999999999999999985  499999999987531   1111 1  234455666777665

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.46  E-value=0.097  Score=50.17  Aligned_cols=34  Identities=50%  Similarity=0.738  Sum_probs=30.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +.++|+|+|+|..|+++|..|. .|++|+++|+++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3578999999999999999886 699999999975

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.42  E-value=0.072  Score=44.08  Aligned_cols=31  Identities=35%  Similarity=0.471  Sum_probs=0.0

Q ss_pred             eEEEECCChHHHHHHHHccc-CCcEEEEcCCC
Q 046865           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~   45 (369)
                      +|.|||+|..|...|..+.. |++|+|+|+++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.39  E-value=0.14  Score=45.03  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGS  171 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~  171 (369)
                      ...+|+|+|.|.+|.++|..|+.  .| .++++++...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCE
Confidence            46789999999999999999984  35 6899998764

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=93.35  E-value=0.13  Score=49.24  Aligned_cols=38  Identities=32%  Similarity=0.530  Sum_probs=31.6

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      ++++|||||.+|+-+|..|++...+.+|++++.++++.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence            47999999999999999998642348999999987653

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=93.35  E-value=0.085  Score=49.74  Aligned_cols=53  Identities=19%  Similarity=0.079  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       181 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      +.......+...|.+|+++++|++|+.+++.+.+.+.+|+++++|.||+|+..
T Consensus       211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~  263 (450)
T PF01593_consen  211 LSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPP  263 (450)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-H
T ss_pred             hhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCch
Confidence            34444455555677999999999999888889999999999999999999875

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06185 hypothetical protein; Provisional

Probab=93.28  E-value=0.18  Score=47.51  Aligned_cols=57  Identities=28%  Similarity=0.359  Sum_probs=39.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv  194 (369)
                      ..+|+|||||++|+-+|..|++  .|.+|+++++.+..... ....+.....+.|++.|+
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~   63 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGL   63 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCccccCceeChhHHHHHHHcCC
Confidence            3579999999999999999985  48999999987643211 112333344555555554

>PRK07395 L-aspartate oxidase; Provisional

Probab=93.26  E-value=0.42  Score=47.06  Aligned_cols=54  Identities=11%  Similarity=0.081  Sum_probs=36.5

Q ss_pred             chHHHHHHHHHh-CCcEEEeCceeeeccCCC--CC-eEEE-cCCCc--EEeccEEEEcCCC
Q 046865          180 KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSE--GS-DTYL-TSTGD--TIKADCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~--~~-~~v~-~~~g~--~i~~d~vi~a~G~  233 (369)
                      .+...+.+.+++ .||++++++.+.++..++  +. ..+. ..+|+  .+.++.||+|||-
T Consensus       135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG  195 (553)
T PRK07395        135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG  195 (553)
T ss_pred             HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence            456666666654 489999999998876542  32 2222 23554  4789999999995

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.25  E-value=0.44  Score=45.80  Aligned_cols=85  Identities=19%  Similarity=0.170  Sum_probs=57.4

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS  217 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~  217 (369)
                      ++.|+|.|.+|+..|..|.+  .|.+|+++++.+..      . .....+.|++.|++++.+..... +    .+...  
T Consensus         2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~------~-~~~~~~~l~~~gi~~~~g~~~~~-~----~~~~~--   65 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSP------E-LLERQQELEQEGITVKLGKPLEL-E----SFQPW--   65 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCch------h-hHHHHHHHHHcCCEEEECCccch-h----hhhHH--
Confidence            58999999999999888874  48999999876532      1 22334457778999987753311 0    00000  


Q ss_pred             CCcEEeccEEEEcCCCCCCchhhc
Q 046865          218 TGDTIKADCHFLCTGKPVGSDWLK  241 (369)
Q Consensus       218 ~g~~i~~d~vi~a~G~~p~~~~l~  241 (369)
                         .-.+|.||.+.|..++.+.+.
T Consensus        66 ---~~~~d~vv~s~gi~~~~~~~~   86 (459)
T PRK02705         66 ---LDQPDLVVVSPGIPWDHPTLV   86 (459)
T ss_pred             ---hhcCCEEEECCCCCCCCHHHH
Confidence               124689999999988776554

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.24  E-value=0.098  Score=47.88  Aligned_cols=45  Identities=33%  Similarity=0.552  Sum_probs=37.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA   56 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~   56 (369)
                      ..+||||||.|.-=-..|.+.+ .|.+|+=+|+++|+|..|..+..
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSm   52 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSM   52 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceee
Confidence            4699999999998766666654 59999999999999998876543

>PRK08013 oxidoreductase; Provisional

Probab=93.23  E-value=0.21  Score=47.01  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=30.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      .+|+|||+|+.|+-+|..|++  .|.+|+++++.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence            479999999999999999984  5999999999875

>PRK07588 hypothetical protein; Provisional

Probab=93.20  E-value=0.15  Score=47.83  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      +|+|||||+.|+-+|..|++  .|.+|+++++.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRR--YGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHH--CCCceEEEeCCCCc
Confidence            68999999999999999985  48999999998754

>PRK07045 putative monooxygenase; Reviewed

Probab=93.14  E-value=0.19  Score=47.14  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=31.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .+|+|||||+.|+-+|..|++  .|.+|+++++.+.+
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~   40 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARN   40 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcc
Confidence            479999999999999999985  49999999998765

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=93.05  E-value=0.24  Score=46.75  Aligned_cols=33  Identities=33%  Similarity=0.458  Sum_probs=29.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+|+|||+|+.|+-+|..|.+  .|.+|+++++.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence            369999999999999999974  589999999876

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=92.98  E-value=0.26  Score=45.99  Aligned_cols=34  Identities=35%  Similarity=0.512  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .|+|||+|+.|+-+|..|++  .|.+|+++++.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCcc
Confidence            48999999999999999984  48999999998753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=92.94  E-value=0.2  Score=49.20  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=31.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      ..+|+|||+|++|+-+|..|.+  .|.+|+++++.+.+.
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~~   46 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTLY   46 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Confidence            4579999999999999999985  499999999987543

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.89  E-value=0.4  Score=43.13  Aligned_cols=33  Identities=33%  Similarity=0.439  Sum_probs=29.1

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ++|.|||+|.=|-+.|..|. .|++|.+.-+++.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~   35 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEE   35 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHH
Confidence            58999999999999999987 4799999998754

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.85  E-value=0.47  Score=45.41  Aligned_cols=83  Identities=14%  Similarity=0.114  Sum_probs=55.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL  215 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~  215 (369)
                      .++++|+|+|.+|...|..|.+  .|.+|++.++....        .....+.+++.|+++..+.....+          
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~--~G~~V~~~d~~~~~--------~~~~~~~l~~~g~~~~~~~~~~~~----------   64 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHK--LGANVTVNDGKPFS--------ENPEAQELLEEGIKVICGSHPLEL----------   64 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHH--CCCEEEEEcCCCcc--------chhHHHHHHhcCCEEEeCCCCHHH----------
Confidence            5789999999999999998884  48999998755311        112234567778888655322111          


Q ss_pred             cCCCcEEeccEEEEcCCCCCCchhhcc
Q 046865          216 TSTGDTIKADCHFLCTGKPVGSDWLKD  242 (369)
Q Consensus       216 ~~~g~~i~~d~vi~a~G~~p~~~~l~~  242 (369)
                      +..    .+|.||.+.|..++.+.+..
T Consensus        65 ~~~----~~d~vV~s~gi~~~~~~~~~   87 (447)
T PRK02472         65 LDE----DFDLMVKNPGIPYTNPMVEK   87 (447)
T ss_pred             hcC----cCCEEEECCCCCCCCHHHHH
Confidence            000    37899999998877665543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=92.83  E-value=0.39  Score=37.59  Aligned_cols=74  Identities=15%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT  213 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  213 (369)
                      ..++++|+|+|-+|-..+..|...  +.+ |+++.|..        +-.+.+.+.+....+++..-......        
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~--------~ra~~l~~~~~~~~~~~~~~~~~~~~--------   72 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTP--------ERAEALAEEFGGVNIEAIPLEDLEEA--------   72 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSH--------HHHHHHHHHHTGCSEEEEEGGGHCHH--------
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCH--------HHHHHHHHHcCccccceeeHHHHHHH--------


Q ss_pred             EEcCCCcEEeccEEEEcCCC
Q 046865          214 YLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       214 v~~~~g~~i~~d~vi~a~G~  233 (369)
                             .-.+|.+|.||+.
T Consensus        73 -------~~~~DivI~aT~~   85 (135)
T PF01488_consen   73 -------LQEADIVINATPS   85 (135)
T ss_dssp             -------HHTESEEEE-SST
T ss_pred             -------HhhCCeEEEecCC

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=92.82  E-value=0.27  Score=45.96  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=30.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .+|+|||||+.|+-+|..|.+  .|.+|+++++.+..
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~   40 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCc
Confidence            479999999999999999984  48999999998764

>PRK07190 hypothetical protein; Provisional

Probab=92.81  E-value=0.22  Score=48.23  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ..|+|||+|++|+-+|..|++  .|.+|.++++.+..
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~   40 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGP   40 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcc
Confidence            479999999999999998874  49999999998754

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=92.79  E-value=0.16  Score=49.05  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .++|||||.+|+-+|..|+++.++.+|+++++.+
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~   35 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD   35 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            5899999999999999999866899999999854

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=92.72  E-value=0.28  Score=45.78  Aligned_cols=32  Identities=28%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      +|+|||||+.|+-+|..|++  .|.+|+++++.+
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~   34 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQ--KGIKTTIFESKS   34 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHc--CCCeEEEecCCC
Confidence            58999999999999999974  589999999863

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.67  E-value=0.14  Score=41.84  Aligned_cols=34  Identities=29%  Similarity=0.426  Sum_probs=27.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .+.+|+|+|+|.+|..|+..|. .|.+|+++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            3579999999999999999886 599999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		3e-07
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		9e-07
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		6e-06
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		2e-05
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		2e-05
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		2e-04
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		6e-04
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		6e-04
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		6e-04
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		7e-04

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 117/279 (41%), Gaps = 26/279 (9%)
Query: 16  VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASL-RAMVEPSFGERSVINHT 71
           V +IG GV G   A++L+   F   ++LI  + +      SL +A+++ S     ++   
Sbjct: 5   VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEA 64
Query: 72  DYLVNGRI--VASP---AINITENEVLTAEGRRVVYDYLVIATGHK--------DPVPKT 118
           D+    RI  +  P   A+++    +   +G  +  D +VIATG +          +P  
Sbjct: 65  DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGV 124
Query: 119 RTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EF 176
            T R     Q       SA  +LIVGGG  G E+A           VT++  G  LL   
Sbjct: 125 VTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVA--TTARKLGLSVTILEAGDELLVRV 182
Query: 177 IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236
           +G + G      L    V V+LG  V   S     +  + S G +  AD   +C    VG
Sbjct: 183 LGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALIC----VG 238
Query: 237 SDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDI 275
           ++       +  L  D  ++VD +      K +FA+GD+
Sbjct: 239 AEPADQLARQAGLACDRGVIVD-HCGATLAKGVFAVGDV 276

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 28/200 (14%)
Query: 91  EVLTAEGRRVVYDYLVIATGHK---DPVPKTRTERLNQYQAEN------QKIKSARSILI 141
           +++T E +   YD L++ TG K    P+P   + R+   +  N      ++   A++I I
Sbjct: 95  DLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITI 154
Query: 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK-----VDV 196
           +G G  G ELA   A       V L+    R+L     K  DK    +++K      V++
Sbjct: 155 IGSGYIGAELAE--AYSNQNYNVNLIDGHERVLY----KYFDKEFTDILAKDYEAHGVNL 208
Query: 197 KLGQRVNLDSVSEGSDTYLTST--GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGM 254
            LG +V   +  E  D  +T T  G  IK+D   LC G    ++ LK  +   ++  +G 
Sbjct: 209 VLGSKVA--AFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKV---AMLDNGA 263
Query: 255 LMVDENLRVKGQKNIFAIGD 274
           ++ DE +     ++IFA GD
Sbjct: 264 IITDEYMH-SSNRDIFAAGD 282

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 8/205 (3%)
Query: 76  NGRIVASPAINITENEV-LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI- 133
           N  I  S A+ + E+ + L+  G R+  + ++IATG K  V  +  +  +     N+   
Sbjct: 128 NVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAK-IVSNSAIKGSDLCLTSNEIFD 186
Query: 134 --KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS 191
             K  +SI+IVGGG  GVE A          K TL+H+G  +L            D +++
Sbjct: 187 LEKLPKSIVIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVA 244
Query: 192 KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT 251
           K + +     V+    +E     + + G TI AD   L TG+   +  L        ++ 
Sbjct: 245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNE 304
Query: 252 DGMLMVDENLRVKGQKNIFAIGDIT 276
            G ++VDE +      +I+A+GD+T
Sbjct: 305 FGAVVVDEKMTTN-VSHIWAVGDVT 328

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 94  TAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI---KSARSILIVGGGPTGVE 150
           +A   R+  D++++ATG    +P      +    + N+     +  R +L VGGG   VE
Sbjct: 148 SAVKERLQADHILLATGSWPQMPAI--PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVE 205
Query: 151 LAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQ---RVNLDS 206
            AG   A   P  KVTL ++ + +L        ++    L +  +++   +   +V+L++
Sbjct: 206 FAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNT 265
Query: 207 VSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQ 266
             +GS      +G T+  D   +  G+   ++ L+   +   L   G + VDE  R    
Sbjct: 266 --DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-V 322
Query: 267 KNIFAIGDITD 277
            NI+AIGDITD
Sbjct: 323 PNIYAIGDITD 333

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 94  TAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI---KSARSILIVGGGPTGVE 150
           +A   R+  D++++ATG    +P      +    + N+     +  R +L VGGG   VE
Sbjct: 145 SAVKERLQADHILLATGSWPQMPAI--PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVE 202
Query: 151 LAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQ---RVNLDS 206
            AG   A   P  KVTL ++ + +L        ++    L +  +++   +   +V+L++
Sbjct: 203 FAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNT 262
Query: 207 VSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQ 266
             +GS      +G T+  D   +  G+   ++ L+   +   L   G + VDE  R    
Sbjct: 263 --DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-V 319
Query: 267 KNIFAIGDITD 277
            NI+AIGDITD
Sbjct: 320 PNIYAIGDITD 330

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 93/225 (41%), Gaps = 24/225 (10%)
Query: 94  TAEGRRVVYDYLVIATGHKDPVPK---------TRTERLNQYQAENQKIKSAR--SILIV 142
           T E R + YD LV+A G K   P          T    L++ +     I +      +IV
Sbjct: 106 TGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIV 165
Query: 143 GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK-VDVKLGQR 201
           GGG  G+E+A  +A D      T+V    +++     K+  + L   + K  V V  G++
Sbjct: 166 GGGFIGLEMAVSLA-DMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEK 224
Query: 202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENL 261
           V       G    + +   T+ AD   L  G    +   +D  L+  LD  G ++VD  +
Sbjct: 225 VVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLE--LDPRGAIIVDTRM 282
Query: 262 RVKGQKNIFAIGDITDIREI---KQGF-----LAQKHAQVAAKNL 298
           R     +IFA GD   I  +   K GF     +A +  +V   NL
Sbjct: 283 RTS-DPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNL 326

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           +VN R  A PA  + E         R+  +++++A+G    +P      +    + N+  
Sbjct: 134 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 182
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWL 189
              +  R +L VGGG   VE AG      P + +VTL ++G  +L     +  D TL   
Sbjct: 183 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----RGFDHTLREE 237
Query: 190 ISKKVD---VKLGQRVNLDSV---SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
           ++K++    +++  + N   V   ++GS +    +G  +  D   +  G+   S   KD 
Sbjct: 238 LTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDL 294
Query: 244 ILKDS--LDTDGMLMVDENLRVKGQKNIFAIGDITD 277
            L+++  +  +G + VDE  R     NI+AIGD+T+
Sbjct: 295 QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 329

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           +VN R  A PA  + E         R+  +++++A+G    +P      +    + N+  
Sbjct: 135 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 183
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWL 189
              +  R +L VGGG   VE AG      P + +VTL ++G  +L     +  D TL   
Sbjct: 184 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----RGFDHTLREE 238
Query: 190 ISKKVD---VKLGQRVNLDSV---SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
           ++K++    +++  + N   V   ++GS +    +G  +  D   +  G+   S   KD 
Sbjct: 239 LTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDL 295
Query: 244 ILKDS--LDTDGMLMVDENLRVKGQKNIFAIGDITD 277
            L+++  +  +G + VDE  R     NI+AIGD+T+
Sbjct: 296 QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 330

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           +VN R  A PA  + E         R+  +++++A+G    +P      +    + N+  
Sbjct: 133 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 181
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWL 189
              +  R +L VGGG   VE AG      P + +VTL ++G  +L     +  D TL   
Sbjct: 182 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----RGFDHTLREE 236
Query: 190 ISKKVD---VKLGQRVNLDSV---SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
           ++K++    +++  + N   V   ++GS +    +G  +  D   +  G+   S   KD 
Sbjct: 237 LTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDL 293
Query: 244 ILKDS--LDTDGMLMVDENLRVKGQKNIFAIGDITD 277
            L+++  +  +G + VDE  R     NI+AIGD+T+
Sbjct: 294 QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 328

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDV 196
           +S++++GGG  G+EL G    +F  K   L   G  L  F      +K +  +I K++  
Sbjct: 171 KSLVVIGGGYIGIEL-GTAYANFGTKVTILEGAGEILSGF------EKQMAAIIKKRLK- 222
Query: 197 KLGQRVNLDSVSEGSD--------TYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILK 246
           K G  V  +++++G++        TY  + G+  TI AD   +  G+   +D L    + 
Sbjct: 223 KKGVEVVTNALAKGAEEREDGVTVTY-EANGETKTIDADYVLVTVGRRPNTDELGLEQIG 281
Query: 247 DSLDTDGMLMVDENLRVKGQKNIFAIGDI 275
             +   G++ VD+  R     NIFAIGDI
Sbjct: 282 IKMTNRGLIEVDQQCRTS-VPNIFAIGDI 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-36
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	2e-34
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	1e-32
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	4e-25
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	3e-24
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-23
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	2e-23
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-22
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	3e-22
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	5e-22
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	2e-21
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	6e-21
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	1e-20
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-20
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	2e-20
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-19
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	2e-19
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	2e-18
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	2e-18
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	2e-18
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	5e-18
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	6e-18
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	6e-17
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	4e-08
4dna_A	463	Probable glutathione reductase; structural genomic	7e-08
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	9e-08
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-07
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	1e-07
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-07
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	2e-07
4fk1_A	304	Putative thioredoxin reductase; structural genomic	3e-07
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	5e-07
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-05
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	7e-07
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	1e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	3e-06
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	7e-06
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	1e-05
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	1e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-05
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	3e-05
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	3e-05
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	5e-05
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	6e-05
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	8e-05
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	1e-04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-04
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	2e-04
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	6e-04
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	7e-04
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	8e-04

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score =  130 bits (329), Expect = 2e-34
 Identities = 70/380 (18%), Positives = 121/380 (31%), Gaps = 76/380 (20%)

Query: 13  NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYF----EITW--ASLRAMVEPSF 62
           +  VV++G G  G   A  ++       +VTLI   +YF       W     +   + +F
Sbjct: 4   SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63

Query: 63  GERSVINHTD-YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE 121
             R  +     + +         I+     +  A+G  V YDYL+IATG     PK   E
Sbjct: 64  PIRHYVERKGIHFIAQSAEQ---IDAEAQNITLADGNTVHYDYLMIATG-----PKLAFE 115

Query: 122 R---LNQYQAENQKIKSARSIL---------------IVGGGPTGVELAG---EIA---- 156
                + ++   Q I +                    IV G   G    G   E A    
Sbjct: 116 NVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVA 175

Query: 157 -------VDFPEKKVTLVHKGSRLLE---FIGPKAGDKTLDWLISKKVDVKLGQRV---- 202
                  +       T +     +          +       L  + ++     +V    
Sbjct: 176 SDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVE 235

Query: 203 -NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV-GSDWLKDTILKDSLDTDGMLMVDEN 260
            N   V++  +   T     +     F        G   +     +   +  G ++VDE+
Sbjct: 236 DNKMYVTQVDEKGETIKEMVLPVK--FGMMIPAFKGVPAVAGV--EGLCNPGGFVLVDEH 291

Query: 261 LRVKGQKNIFAIGDITDIREI----------KQGFLAQKHAQVAAKNLKVLMVGERESKM 310
            R K   NIFA G    I  +          K G++ +     A  N+K  + G +  + 
Sbjct: 292 QRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQT 351

Query: 311 ATYWPHSAIAIVSLGRKDAV 330
              W  +A+A   +G + A 
Sbjct: 352 MGTW--NAVAFADMGDRGAA 369

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score =  125 bits (315), Expect = 1e-32
 Identities = 55/377 (14%), Positives = 109/377 (28%), Gaps = 76/377 (20%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEIT---------WASLRAMVEP 60
            +V+V+GG       A +L+      ADV +I+   +                +  +   
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVD 61

Query: 61  SFGERSVINHTD-YLVNGRIVASPAINITENEVLT----AEGRRVVYDYLVIATGHK--- 112
                  +         G +     I+   + V             YDY+++  G     
Sbjct: 62  ---LSEALPEKGIQFQEGTVEK---IDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLAT 115

Query: 113 ----------------DPVPKTRTERLNQYQAEN------------QKIKSARSILIVGG 144
                           +   K R E+L  +Q  N                      +   
Sbjct: 116 ELVKGWDKYGYSVCEPEFATKLR-EKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNA 174

Query: 145 GPTGVELAGEIAVDFPEK----------KVTLVHKGSRLLEFIGPKAGDKTLDWLISKKV 194
                    E+++                VT+   G  L +   P +            +
Sbjct: 175 DSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDL-SPNSRKAVASIYNQLGI 233

Query: 195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGM 254
            +       +  + E     +   G+TI AD   L      G+  LK++   D +D  G 
Sbjct: 234 KLVHN--FKIKEIRE--HEIVDEKGNTIPADITILLPPY-TGNPALKNSTP-DLVDDGGF 287

Query: 255 LMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYW 314
           +  D N+      N++A+GD   +   K G+LA    ++AA++L   +    +       
Sbjct: 288 IPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRLGVPTKVDKYY-- 345

Query: 315 PHSAIAIVSLGRKDAVA 331
             + + +     +    
Sbjct: 346 -PTIVCVADNPYEGYAV 361

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score =  104 bits (260), Expect = 4e-25
 Identities = 72/348 (20%), Positives = 118/348 (33%), Gaps = 47/348 (13%)

Query: 14  KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEI----TW--ASLRAMVEPSFGE 64
           ++VVV+GGG  G+  AK ++    S +VTLI+P   +             R +     G 
Sbjct: 3   RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK---DPVPKTRTE 121
             +  H   +V+        I+  +  V TA G    YD  V+A G +   D +     E
Sbjct: 63  DGLRAHGIQVVHDSATG---IDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEGYSEE 119

Query: 122 ----------RLNQYQAENQKIKSARS---ILIVG------GGPTGVELAGEIAVDF--- 159
                        Q     ++++       ++I          P   E A ++A      
Sbjct: 120 AAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAH 179

Query: 160 -PEKKVTLVHKGSRLLEFIGPKAGDKTL--DWLISKKVDVKLGQRVNLDSVSEGSDTYLT 216
            P  KV ++       +      G + L      +  ++   G    +  V  G     T
Sbjct: 180 KPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVET 239

Query: 217 STGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVD-ENLRVKGQKNIFAIGDI 275
           + GD  KAD   L           +   L +     G   VD +       K I  IGD 
Sbjct: 240 AFGDEFKADVINLIP-PQRAGKIAQIAGLTND---AGWCPVDIKTFESSIHKGIHVIGDA 295

Query: 276 TDIREI-KQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIV 322
           +    + K G+ A    +VAA  + VL+ G  E    +Y       + 
Sbjct: 296 SIANPMPKSGYSANSQGKVAAAAVVVLLKG-EEPGTPSYLNTCYSILA 342

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  101 bits (254), Expect = 3e-24
 Identities = 58/321 (18%), Positives = 113/321 (35%), Gaps = 59/321 (18%)

Query: 6   QQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLI--DPK---------EYF--EITW 51
                 K+ +++++G G AG   AK+      D+T+I  +           E      + 
Sbjct: 2   HHHHHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSI 61

Query: 52  ASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH 111
             +  + +  + E+   N+   + +    +   I+     V    G ++ Y+ L+IA+G 
Sbjct: 62  DDI-LIKKNDWYEK---NNIKVITSEFATS---IDPNNKLVTLKSGEKIKYEKLIIASGS 114

Query: 112 KDPVPKT---------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK 162
                K           +   +       + K+     I+GGG  G+ELA  I       
Sbjct: 115 IANKIKVPHADEIFSLYS--YDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS--GT 170

Query: 163 KVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDT 221
             ++       LE  +    G    D L    + +                      GD 
Sbjct: 171 PASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF-------------EEMGDL 217

Query: 222 IKADCHFLCTG-KPVGSDWLKDTILKDS-LDTDGMLMVDENLRVKGQKNIFAIGDITDIR 279
           I++ C     G KP          +KD+ + +   ++V++++     K+I+A GD+ +  
Sbjct: 218 IRSSCVITAVGVKP------NLDFIKDTEIASKRGILVNDHMET-SIKDIYACGDVAEFY 270

Query: 280 EIKQGFL--AQKHAQVAAKNL 298
               G +  A K  +VA  N 
Sbjct: 271 GKNPGLINIANKQGEVAGLNA 291

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  100 bits (252), Expect = 2e-23
 Identities = 70/341 (20%), Positives = 127/341 (37%), Gaps = 65/341 (19%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------E 48
              +    ++++VV+GG   G+ VA   + L    ++ +++  EY               
Sbjct: 28  DDDKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGV 87

Query: 49  IT-WASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVY 102
           IT    L         +R  +   D  V   +V    IN  E  +      T E     Y
Sbjct: 88  ITERQKLLVQTVERMSKRFNL---DIRVLSEVVK---INKEEKTITIKNVTTNETYNEAY 141

Query: 103 DYLVIATGHKDPVP--------------KTR--TERLNQYQAENQKIKSARSILIVGGGP 146
           D L+++ G K  VP              +    T+R+  Y  E +     R   ++GGG 
Sbjct: 142 DVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKK----PRHATVIGGGF 197

Query: 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS 206
            GVE+  E  +     +VTLV   ++++  I  +      + + +  V++     V  D+
Sbjct: 198 IGVEMV-E-NLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGV--DA 253

Query: 207 VSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKG 265
           + E        +G  I+ D   L  G +P  S   K   L   L   G + V+E  +   
Sbjct: 254 LEENGAVVRLKSGSVIQTDMLILAIGVQP-ESSLAKGAGLA--LGVRGTIKVNEKFQT-S 309

Query: 266 QKNIFAIGDITDIREIKQGF--------LAQKHAQVAAKNL 298
             +I+AIGD  ++++              A +  ++ A  +
Sbjct: 310 DPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADII 350

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 99.2 bits (248), Expect = 2e-23
 Identities = 72/343 (20%), Positives = 124/343 (36%), Gaps = 77/343 (22%)

Query: 13  NKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAM 57
           N  V++ G G AG  VA SL   ++   + LI+     P       K Y +        M
Sbjct: 1   NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLM 60

Query: 58  VEP-SFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HKD 113
             P  F +   I     L++ R+V+   I+    ++L A G  + Y +LV+ATG      
Sbjct: 61  FRPEKFFQDQAIE----LISDRMVS---IDREGRKLLLASGTAIEYGHLVLATGARNRML 113

Query: 114 PVPKT--------RT----ERLNQYQAENQKIKSARSILIVGGGPTGVELA------GEI 155
            VP          RT    E L       Q++   + ++++G G  G+E A      G  
Sbjct: 114 DVPNASLPDVLYLRTLDESEVL------RQRMPDKKHVVVIGAGFIGLEFAATARAKG-- 165

Query: 156 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVN-LDSVSEGSDT 213
                  +V +V    R++   + P+      D      + +  G R   + +  +    
Sbjct: 166 ------LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTG 219

Query: 214 YLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIG 273
            + S G+T+  D   +  G     +          L T   ++VD+ L      +I AIG
Sbjct: 220 VVLSDGNTLPCDLVVVGVGVIPNVEIAAAA----GLPTAAGIIVDQQLLT-SDPHISAIG 274

Query: 274 DITDIREIKQGFL--------AQKHAQVAAKNLKVLMVGERES 308
           D      ++ G          A   A+  A      + G+ + 
Sbjct: 275 DCALFESVRFGETMRVESVQNATDQARCVAAR----LTGDAKP 313

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 97.9 bits (244), Expect = 1e-22
 Identities = 65/359 (18%), Positives = 118/359 (32%), Gaps = 67/359 (18%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYF---- 47
           Q     +   ++IGGG A    A+S+      A V ++      P       KE +    
Sbjct: 5   QDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDD 64

Query: 48  EITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP--------------AINITENEVL 93
                +LR                 + V+ + +                  +++ +N V 
Sbjct: 65  PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVK 124

Query: 94  TAEGRRVVYDYLVIATG---------------HKDPVPKTRTERLNQYQAENQKIKSARS 138
             +G ++ Y+  +IATG                K      R   +  +++  +  +  +S
Sbjct: 125 LNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRK--IGDFRSLEKISREVKS 182

Query: 139 ILIVGGGPTGVELAGEIAVDFPE--KKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVD 195
           I I+GGG  G ELA  +         +V  +      +   +     + T++ +  + V 
Sbjct: 183 ITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVK 242

Query: 196 VKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGML 255
           V     V    VS G        G  ++ D      G     +  K   L+   D  G  
Sbjct: 243 VMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 302

Query: 256 MVDENLRVKGQKNIFAIGDITDIREIKQGFL-------AQKHAQVAAKNLKVLMVGERE 307
            V+  L+ +   NI+  GD     +IK G         A    ++A +N    M G  +
Sbjct: 303 -VNAELQAR--SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGEN----MTGAAK 354

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 96.4 bits (241), Expect = 3e-22
 Identities = 61/324 (18%), Positives = 116/324 (35%), Gaps = 55/324 (16%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRA 56
            ++VV+G    G+  A   + L   +D+ + +                   +       A
Sbjct: 2   PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALA 61

Query: 57  MVEPSFGERSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGH 111
                F +R  I          ++A   IN     V      T E     YD L+++ G 
Sbjct: 62  YTPEKFYDRKQI---TVKTYHEVIA---INDERQTVSVLNRKTNEQFEESYDKLILSPGA 115

Query: 112 KDPVPKTRTER------LNQYQAENQKIK--SARSILIVGGGPTGVELAGEIAVDFPEKK 163
                   ++       L    A +Q IK      +L+VG G   +E+  E  +      
Sbjct: 116 SANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVL-E-NLYERGLH 173

Query: 164 VTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIK 223
            TL+H+  ++ + +        LD L  +++  +L + +  +++  G++    S G    
Sbjct: 174 PTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEI--NAI-NGNEITFKS-GKVEH 229

Query: 224 ADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI- 281
            D      G  P  S +++ + +K  LD  G + V++        NI+AIGDI       
Sbjct: 230 YDMIIEGVGTHPN-SKFIESSNIK--LDRKGFIPVNDKFET-NVPNIYAIGDIATSHYRH 285

Query: 282 --KQGFL-----AQKHAQVAAKNL 298
                 +     A + A + A+ +
Sbjct: 286 VDLPASVPLAWGAHRAASIVAEQI 309

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 95.3 bits (238), Expect = 5e-22
 Identities = 76/337 (22%), Positives = 118/337 (35%), Gaps = 73/337 (21%)

Query: 15  RVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAMVE 59
            V +IG GV G   A++L    F   ++LI      P       K   + +      + E
Sbjct: 4   HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAE 63

Query: 60  PSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH---KDPVP 116
             +   + I   D L    + A   +++    +   +G  +  D +VIATG       +P
Sbjct: 64  ADWYGEARI---DMLTGPEVTA---LDVQTRTISLDDGTTLSADAIVIATGSRARTMALP 117

Query: 117 KT--------RT----ERLNQYQAENQKIKSARSILIVGGGPTGVELA------GEIAVD 158
            +        RT    + L           SA  +LIVGGG  G E+A      G     
Sbjct: 118 GSQLPGVVTLRTYGDVQVL------RDSWTSATRLLIVGGGLIGCEVATTARKLG----- 166

Query: 159 FPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS 217
                VT++  G  LL   +G + G      L    V V+LG  V   S     +  + S
Sbjct: 167 ---LSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMAS 223

Query: 218 TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITD 277
            G +  AD   +C G        +       L  D  ++VD        K +FA+GD+  
Sbjct: 224 DGRSFVADSALICVGAEPADQLARQA----GLACDRGVIVDHCGAT-LAKGVFAVGDVAS 278

Query: 278 IREIKQGFL-------AQKHAQVAAKNLKVLMVGERE 307
                 G         AQ+ A   A      ++G+  
Sbjct: 279 WPLRAGGRRSLETYMNAQRQAAAVAAA----ILGKNV 311

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 94.2 bits (235), Expect = 2e-21
 Identities = 67/345 (19%), Positives = 120/345 (34%), Gaps = 75/345 (21%)

Query: 13  NKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAM 57
           N  VV++G G+AG  VA  L    +  ++ L+      P       K Y      +    
Sbjct: 4   NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 63

Query: 58  VEPS--FGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HK 112
           +     +  +++      L   ++ A   IN    +V+ ++GR + YD LV+ATG     
Sbjct: 64  LRTPDAYAAQNI----QLLGGTQVTA---INRDRQQVILSDGRALDYDRLVLATGGRPRP 116

Query: 113 DPVPKT-----------RTERLNQYQAENQKIKSARSILIVGGGPTGVELA------GEI 155
            PV              RT  L   +   +++ +   ++++GGG  G+E+A         
Sbjct: 117 LPVASGAVGKANNFRYLRT--LEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKAN-- 172

Query: 156 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY 214
                   VTL+   +R+LE    P              VD++ G +V    +S      
Sbjct: 173 ------MHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKV 226

Query: 215 ---LTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFA 271
              L   G  + AD      G     +          L  D  ++++E+++      I A
Sbjct: 227 TAVLCEDGTRLPADLVIAGIGLIPNCELASAA----GLQVDNGIVINEHMQT-SDPLIMA 281

Query: 272 IGDITDIREIKQGFL--------AQKHAQVAAKNLKVLMVGERES 308
           +GD                    A + A+  A      + G+   
Sbjct: 282 VGDCARFHSQLYDRWVRIESVPNALEQARKIAAI----LCGKVPR 322

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 93.0 bits (232), Expect = 6e-21
 Identities = 64/340 (18%), Positives = 121/340 (35%), Gaps = 63/340 (18%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------E 48
              +    +   V+IGG  AG   A        +A+V  ++  E +              
Sbjct: 28  DDDKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGA 87

Query: 49  IT-WASLRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVY 102
           I     L A    +F ++  I   D  V   +     ++  +  V      T +     Y
Sbjct: 88  IASTEKLIARNVKTFRDKYGI---DAKVRHEVTK---VDTEKKIVYAEHTKTKDVFEFSY 141

Query: 103 DYLVIATGHKDPVP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGPT 147
           D L+IATG +  +P             KT    ER+ +   E  K++      I+GGG  
Sbjct: 142 DRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKT-LETNKVEDV---TIIGGGAI 197

Query: 148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV 207
           G+E+A E       KKV ++ +   +         +          +++   + V     
Sbjct: 198 GLEMA-E-TFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVK-AFK 254

Query: 208 SEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQ 266
                  + +   T KAD   +  G KP  +D+L+ T ++   +  G + V+  ++    
Sbjct: 255 GNERVEAVETDKGTYKADLVLVSVGVKP-NTDFLEGTNIR--TNHKGAIEVNAYMQT-NV 310

Query: 267 KNIFAIGDITDIREI---KQGFL-----AQKHAQVAAKNL 298
           ++++A GD      +       +     A K  ++A  N+
Sbjct: 311 QDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNM 350

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 91.5 bits (228), Expect = 1e-20
 Identities = 67/331 (20%), Positives = 111/331 (33%), Gaps = 69/331 (20%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWAS 53
            E     VVV+G G+A       L    +   +T++      P       K++  +    
Sbjct: 3   QEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDF--MAHGD 60

Query: 54  LRAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH-- 111
              +         V    ++L+        + +   + V  ++GR + Y  LV+ATG   
Sbjct: 61  AEKIRLDCKRAPEV----EWLLGVTAQ---SFDPQAHTVALSDGRTLPYGTLVLATGAAP 113

Query: 112 -KDPVPKT--------RTERLNQYQAENQKIKSARSILIVGGGPTGVELA------GEIA 156
              P  +         RT  L   +     ++    +LIVGGG  G+ELA      G   
Sbjct: 114 RALPTLQGATMPVHTLRT--LEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAG--- 168

Query: 157 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL 215
                  V+LV    RL+         D    +  ++ VD++  + V            L
Sbjct: 169 -----VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV----TGSVDGVVL 219

Query: 216 TSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDI 275
              G  I AD   +  G        +       L  D  + VD   R     +++A+GD+
Sbjct: 220 LDDGTRIAADMVVVGIGVLANDALARAA----GLACDDGIFVDAYGRT-TCPDVYALGDV 274

Query: 276 TDIREIKQGFL--------AQKHAQVAAKNL 298
           T  R    G          AQ      A++L
Sbjct: 275 TRQRNPLSGRFERIETWSNAQNQGIAVARHL 305

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 91.1 bits (227), Expect = 1e-20
 Identities = 67/351 (19%), Positives = 118/351 (33%), Gaps = 78/351 (22%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITW 51
            + + +   VV++G G  G+  A +L    F   V +I      P       KEY     
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREK 62

Query: 52  ASLRAMVEPS--FGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIAT 109
              R  + P+  + +++V    +  +   +V+   ++   + V   +G  + Y  L+ AT
Sbjct: 63  TFERICIRPAQFWEDKAV----EMKLGAEVVS---LDPAAHTVKLGDGSAIEYGKLIWAT 115

Query: 110 G---HKDPVPKT--------RT----ERLNQYQAENQKIKSARSILIVGGGPTGVELA-- 152
           G    +              RT    +RL            A++ +++GGG  G+E A  
Sbjct: 116 GGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAG-----AKNAVVIGGGYIGLEAAAV 170

Query: 153 ----GEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVN-LDS 206
               G          VTL+    R+L    G    +       +  VD++ G  ++ ++ 
Sbjct: 171 LTKFG--------VNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG 222

Query: 207 VSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQ 266
                       G  I AD   +  G       L              + VDE  R    
Sbjct: 223 DGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA----GASGGNGVDVDEFCRT-SL 277

Query: 267 KNIFAIGDITDIR-EIKQGFL--------AQKHAQVAAKNLKVLMVGERES 308
            +++AIGD      +   G +        A   A  AAK+    + G    
Sbjct: 278 TDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKD----ICGAPVP 324

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 91.4 bits (228), Expect = 2e-20
 Identities = 81/338 (23%), Positives = 116/338 (34%), Gaps = 68/338 (20%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLID------------P-------KEYFEITW 51
           K VVVIG    G   A   K L   A VT+ID            P            +  
Sbjct: 4   KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQA 63

Query: 52  ASLRAMVEP-SFGERSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYL 105
                + +P  F     +   + LV  R  A   I+   + V      T E R + YD L
Sbjct: 64  TPYNVVRDPEFFRINKDV---EALVETRAHA---IDRAAHTVEIENLRTGERRTLKYDKL 117

Query: 106 VIATGHKDPVP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGPTGVE 150
           V+A G K   P                   E +    +  +        +IVGGG  G+E
Sbjct: 118 VLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGE----VSKAVIVGGGFIGLE 173

Query: 151 LAGEIAVDFPEKKVTLVHKGSRLL-EFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE 209
           +A     D      T+V    +++  F            L    V V  G++V       
Sbjct: 174 MA-VSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN 232

Query: 210 GSDTYLTSTGDTIKADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKN 268
           G    + +   T+ AD   L  G  P  +   +D  L+  LD  G ++VD  +R     +
Sbjct: 233 GKVARVITDKRTLDADLVILAAGVSPN-TQLARDAGLE--LDPRGAIIVDTRMRT-SDPD 288

Query: 269 IFAIGDITDIREI---KQGFL-----AQKHAQVAAKNL 298
           IFA GD   I  +   K GF      A +  +V   NL
Sbjct: 289 IFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNL 326

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 62/350 (17%), Positives = 130/350 (37%), Gaps = 81/350 (23%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRA 56
           K++++IGG   G+  A   + L  +A++ + +  EY              EI   ++L  
Sbjct: 2   KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVL 61

Query: 57  MVEPSFGERSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGH 111
               SF  R  +   +  V   +VA   I+     V           +  YD L+++ G 
Sbjct: 62  QTPESFKARFNV---EVRVKHEVVA---IDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA 115

Query: 112 KDPVP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA 156
              VP             +     +R+ Q   +   ++ A    +VGGG  G+E+  E +
Sbjct: 116 APIVPPIPGVDNPLTHSLRNIPDMDRILQT-IQMNNVEHA---TVVGGGFIGLEMM-E-S 169

Query: 157 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRV-------------- 202
           +     K TL+    +++  +  +        +  + VD++LG  +              
Sbjct: 170 LHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASD 229

Query: 203 -----NLDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLM 256
                      +G  +   S G+ ++ D   +  G +P  +   +D  L   +   G + 
Sbjct: 230 AAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRP-ETQLARDAGLA--IGELGGIK 286

Query: 257 VDENLRVKGQKNIFAIGDITDIREI---KQGFL-----AQKHAQVAAKNL 298
           V+  ++      I+A+GD  + ++    +   +     A +  ++AA N+
Sbjct: 287 VNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNM 335

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 88.3 bits (220), Expect = 2e-19
 Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 56/326 (17%)

Query: 13  NKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLR 55
           + ++V+IG   AG   A   +     A+++LID +                 I      R
Sbjct: 2   SLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEAR 61

Query: 56  AMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVL---TAEGRRVVYDYLVIATG-- 110
            + E     + +      L+N  +V   A+++    +      E +   YD L++ATG  
Sbjct: 62  YITEEELRRQKI----QLLLNREVV---AMDVENQLIAWTRKEEQQWYSYDKLILATGAS 114

Query: 111 -HKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKK 163
                +  ++TE+      L+   A    +++++++ ++G GP G+E   +  +   +K 
Sbjct: 115 QFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAI-D-FLVKMKKT 172

Query: 164 VTLVHKGSRLL-EFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST-GDT 221
           V +      LL ++   +   +    L  + V     + V    + E ++  +  T    
Sbjct: 173 VHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETV--LGIEETANGIVLETSEQE 230

Query: 222 IKADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE 280
           I  D         P    +L   I     + D  + VD  L+     N+FAIGD   +  
Sbjct: 231 ISCDSGIFALNLHPQ-LAYLDKKI---QRNLDQTIAVDAYLQT-SVPNVFAIGDCISVMN 285

Query: 281 I---KQGFL-----AQKHAQVAAKNL 298
               +  +      A +   V A NL
Sbjct: 286 EPVAETFYAPLVNNAVRTGLVVANNL 311

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 85.2 bits (212), Expect = 2e-18
 Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 70/332 (21%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYFEITWAS---------------LR 55
           K+VV+IGGG AG   A   K L+   DV + +  E+  ++ A                L 
Sbjct: 4   KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW--VSHAPCGIPYVVEGLSTPDKLM 61

Query: 56  AMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVL-TAEGRRVVYDYLVIATGHKDP 114
                 F ++  I   D  +N  ++    ++     V      +   +DYLV A G    
Sbjct: 62  YYPPEVFIKKRGI---DLHLNAEVIE---VDTGYVRVRENGGEKSYEWDYLVFANGASPQ 115

Query: 115 VP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF 159
           VP                     + +Y  E  K+++    +I+GGG  G+E+A E A   
Sbjct: 116 VPAIEGVNLKGVFTADLPPDALAIREY-MEKYKVENV---VIIGGGYIGIEMA-E-AFAA 169

Query: 160 PEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK----VDVKLGQRVNLDSVSEGSDTYL 215
             K VT++ +G R+L     ++ DK +  ++ +K    V+++L +        E     +
Sbjct: 170 QGKNVTMIVRGERVL----RRSFDKEVTDILEEKLKKHVNLRLQEITM-KIEGEERVEKV 224

Query: 216 TSTGDTIKADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGD 274
            +     KA+   L TG KP   +  K   ++  +   G +  +E ++    +N++A GD
Sbjct: 225 VTDAGEYKAELVILATGIKP-NIELAKQLGVR--IGETGAIWTNEKMQT-SVENVYAAGD 280

Query: 275 ITDIREI---KQGFL-----AQKHAQVAAKNL 298
           + + R +   ++ ++       K   VA  N+
Sbjct: 281 VAETRHVITGRRVWVPLAPAGNKMGYVAGSNI 312

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 84.5 bits (210), Expect = 2e-18
 Identities = 74/316 (23%), Positives = 125/316 (39%), Gaps = 61/316 (19%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE------------YF--EITWASLRAMVE 59
            +VV++G G  G  +AK L  + +VT+ID KE            Y    I    L     
Sbjct: 9   SKVVIVGNGPGGFELAKQLSQTYEVTVID-KEPVPYYSKPMLSHYIAGFIPRNRL-FPYS 66

Query: 60  PSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT- 118
             +  +      +  +         I+     V+T +G  V YD LV+ATG +   P+  
Sbjct: 67  LDWYRK---RGIEIRLAEEAKL---IDRGRKVVITEKGE-VPYDTLVLATGARAREPQIK 119

Query: 119 --------RT----ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTL 166
                   RT    +R+ +       I+++   +I+GGG  G+ELAG +A       V L
Sbjct: 120 GKEYLLTLRTIFDADRIKES------IENSGEAIIIGGGFIGLELAGNLAEA--GYHVKL 171

Query: 167 VHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADC 226
           +H+G+  L     +  +   D L    V   L        + E ++  + +    I+   
Sbjct: 172 IHRGAMFLGL-DEELSNMIKDMLEETGVKFFLN-----SELLEANEEGVLTNSGFIEGKV 225

Query: 227 HFLCTG-KPVGSDWLKDTILKDS-LDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG 284
                G  P         + + S + T   +++D+N R    K+++AIGD  +   I  G
Sbjct: 226 KICAIGIVP------NVDLARRSGIHTGRGILIDDNFRT-SAKDVYAIGDCAEYSGIIAG 278

Query: 285 FL--AQKHAQVAAKNL 298
               A + A+V A  L
Sbjct: 279 TAKAAMEQARVLADIL 294

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 66/326 (20%), Positives = 121/326 (37%), Gaps = 55/326 (16%)

Query: 15  RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EITWASLRAMV 58
           +V+V+G   AG+       +    ADVT  +  +               EI     R + 
Sbjct: 2   KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLF 61

Query: 59  --EPSFGERSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATG- 110
              P           +  +  ++     ++     +      T E +   YD L++ TG 
Sbjct: 62  YSSPEELSNLGA---NVQMRHQVTN---VDPETKTIKVKDLITNEEKTEAYDKLIMTTGS 115

Query: 111 --HKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK 162
                P+P   + R       N  +   ++   A++I I+G G  G ELA E A      
Sbjct: 116 KPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA-E-AYSNQNY 173

Query: 163 KVTLVHKGSRLL-EFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDT 221
            V L+    R+L ++   +  D       +  V++ LG +V      +      T  G  
Sbjct: 174 NVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKE 233

Query: 222 IKADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE 280
           IK+D   LC G +P  ++ LK  +   ++  +G ++ DE +     ++IFA GD   +  
Sbjct: 234 IKSDIAILCIGFRPN-TELLKGKV---AMLDNGAIITDEYMHS-SNRDIFAAGDSAAVHY 288

Query: 281 I---KQGFL-----AQKHAQVAAKNL 298
                  ++     A +  ++   NL
Sbjct: 289 NPTNSNAYIPLATNAVRQGRLVGLNL 314

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 83.7 bits (208), Expect = 6e-18
 Identities = 68/337 (20%), Positives = 128/337 (37%), Gaps = 78/337 (23%)

Query: 15  RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRAM 57
           +V+V+G    G        +L   A++   +  ++              ++    S+R M
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 58  VEPSFGERSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGHK 112
                  R V    +   N  I A   I   E++V      + E R   YD L+I+ G  
Sbjct: 62  TGEKMESRGV----NVFSNTEITA---IQPKEHQVTVKDLVSGEERVENYDKLIISPGAV 114

Query: 113 DPVP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAV 157
                            + R    +L Q    + ++ +    +++G G  G+E A     
Sbjct: 115 PFELDIPGKDLDNIYLMRGRQWAIKLKQK-TVDPEVNNV---VVIGSGYIGIEAA----- 165

Query: 158 DFPE------KKVTLVHKGSRLL-EFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG 210
              E      KKVT++    R L  ++  +  D   + + +  + +  G+ V      +G
Sbjct: 166 ---EAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVE-RYEGDG 221

Query: 211 SDTYLTSTGDTIKADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNI 269
               + +  +   AD   +  G +P  + WLK T+    L  +G++  DE +R   + ++
Sbjct: 222 RVQKVVTDKNAYDADLVVVAVGVRPN-TAWLKGTL---ELHPNGLIKTDEYMRT-SEPDV 276

Query: 270 FAIGDITDIREI---KQGFL-----AQKHAQVAAKNL 298
           FA+GD T I+      +  +     A+K  + A KNL
Sbjct: 277 FAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 80.3 bits (199), Expect = 6e-17
 Identities = 60/319 (18%), Positives = 115/319 (36%), Gaps = 50/319 (15%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL---QFSADVTLI--DPK---------EYF--EITWASLR 55
           +   +V+IG G+AG  +A+          + +I  D             F        L 
Sbjct: 3   ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62

Query: 56  AMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HK 112
                +  E+    +   L + R+     I+   ++ +      V Y  LV+A G    +
Sbjct: 63  MAEPGAMAEQ---LNARILTHTRVTG---ID-PGHQRIWIGEEEVRYRDLVLAWGAEPIR 115

Query: 113 DPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTL 166
            PV     +       L  Y    Q     R +L++G G  G E A +++      ++ +
Sbjct: 116 VPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSG--GYQLDV 173

Query: 167 VHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY--LTSTGDTIK 223
           V    +++   + P A       L    V   LG  +   S+ +  +      S G+ I 
Sbjct: 174 VAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVL--ASLKKAGEGLEAHLSDGEVIP 231

Query: 224 ADCHFLCTG-KPVGSDWLKDTILKDS-LDTDGMLMVDENLRVKGQKNIFAIGDITDIREI 281
            D      G +P      +  +   + L  +  ++VD +LR     NI+A+GD  ++  +
Sbjct: 232 CDLVVSAVGLRP------RTELAFAAGLAVNRGIVVDRSLRT-SHANIYALGDCAEVDGL 284

Query: 282 KQGFLA--QKHAQVAAKNL 298
              ++      A+  A+ L
Sbjct: 285 NLLYVMPLMACARALAQTL 303

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 137 RSILIVGGGPTGVELAGEI--AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKV 194
           +  L VGGG   +E AG I  A      +V L ++G  +L     +   +  + L +  +
Sbjct: 188 KRALCVGGGYISIEFAG-IFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGI 246

Query: 195 DVKLGQRVN-LDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDW-LKDTILKDSLDT 251
           +V+  +    +   ++G+   +  +G     D   L  G  P      L+   ++  +  
Sbjct: 247 NVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVE--VAK 304

Query: 252 DGMLMVDENLRVKGQKNIFAIGDITD 277
           +G + VD   +     NI+AIGD+TD
Sbjct: 305 NGAIKVDAYSKT-NVDNIYAIGDVTD 329

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 52/412 (12%), Positives = 113/412 (27%), Gaps = 134/412 (32%)

Query: 34  FSADVTLIDPKEYFEITWASL-RAMVEPSFGERSVINHTDYLVNGRIVASPAINITE--- 89
           F  +    D K+  ++  + L +  ++     +  ++ T  L    +++     + +   
Sbjct: 29  FVDN---FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQE-EMVQKFV 83

Query: 90  NEVLTAEGRRVVYDYLV--IATGHKDP--------------------VPK---TRTERLN 124
            EVL        Y +L+  I T  + P                      K   +R +   
Sbjct: 84  EEVLRIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 125 QYQAENQKIKSARSILIVGGGPTG--VELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG 182
           + +    +++ A+++LI G   +G    +A ++ + +                 +  K  
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYK----------------VQCKMD 181

Query: 183 DKTLDWL-ISK--KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDW 239
            K   WL +      +  L     L    + + T  +     IK   H +   +      
Sbjct: 182 FKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI---QAELRRL 237

Query: 240 LKDTILKDSLDTDGMLMVDENLRVKGQKNI--FAIG----------DITD---------- 277
           LK    ++ L     L++     V+  K    F +            +TD          
Sbjct: 238 LKSKPYENCL-----LVLLN---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 278 -IREIKQGFLAQKHAQVAAKNLKV----L-------------MVGERESKMAT---YWPH 316
            +          +   +  K L      L             ++ E           W H
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 317 SAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSR--DLFVGKTRKQMGLEPDV 366
                ++   + ++  L         P   +     L V          P  
Sbjct: 350 VNCDKLTTIIESSLNVLE--------PAEYRKMFDRLSV--------FPPSA 385

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 137 RSILIVGGGPTGVELAGEI--AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKV 194
           R +L VGGG   VE AG I  A   P  KVTL ++ + +L        ++    L +  +
Sbjct: 192 RRVLTVGGGFISVEFAG-IFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGI 250

Query: 195 DVKLGQRVN-LDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDWLKDTILKDSLDTD 252
           ++   +    +   ++GS      +G T+  D   +  G  P  ++ L+   +   L   
Sbjct: 251 EIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR-TNDLQLGNVGVKLTPK 309

Query: 253 GMLMVDENLRVKGQKNIFAIGDITD 277
           G + VDE  R     NI+AIGDITD
Sbjct: 310 GGVQVDEFSRT-NVPNIYAIGDITD 333

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
            SILI GGG   VE A     + V       TL+++G  +L              +  K 
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVK-----TTLIYRGKEILSRFDQDMRRGLHAAMEEKG 225

Query: 194 VDVKLGQRVN-LDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDW-LKDTILKDSLD 250
           + +     +  + + ++G     T     I AD   L  G  P  +   L+   ++   +
Sbjct: 226 IRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVR--TN 283

Query: 251 TDGMLMVDENLRVKGQKNIFAIGDITD 277
             G ++VD   R      I+A+GD+TD
Sbjct: 284 ELGAIIVDAFSRT-STPGIYALGDVTD 309

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 52.5 bits (127), Expect = 9e-08
 Identities = 50/243 (20%), Positives = 86/243 (35%), Gaps = 49/243 (20%)

Query: 77  GRIVASPAINITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRTERLNQY 126
            R     ++ +  NE      R V++D  ++ATG           K+    T TE L   
Sbjct: 117 ARFKDDQSLTVRLNE---GGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALAS- 172

Query: 127 QAENQKIKSARSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPK 180
                 I     + ++G     +ELA      G         KVT++   + L     P 
Sbjct: 173 ----DTIP--ERLAVIGSSVVALELAQAFARLG--------SKVTVLA-RNTLFFREDPA 217

Query: 181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDW 239
            G+       ++ ++V    +          +  LT+T   ++AD   + TG  P     
Sbjct: 218 IGEAVTAAFRAEGIEVLEHTQA-SQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTRSL 276

Query: 240 LKDTI-LKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQK---HAQVAA 295
             D   +   ++  G +++D+ +R     NI+A GD TD     Q             AA
Sbjct: 277 ALDAAGVT--VNAQGAIVIDQGMRTS-NPNIYAAGDCTD-----QPQFVYVAAAAGTRAA 328

Query: 296 KNL 298
            N+
Sbjct: 329 INM 331

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 15/147 (10%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
           +SI+IVGGG  GVE A     + V       TL+H+G  +L            D +++K 
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVK-----TTLLHRGDLILRNFDYDLRQLLNDAMVAKG 246

Query: 194 VDVKLGQRVNLDSVSEGSDTYL--TSTGDTIKADCHFLCTG-KPVGSDWLKDTILKDSLD 250
           + +     V    V    + Y    + G TI AD   L TG  P  +  L        ++
Sbjct: 247 ISIIYEATV--SQVQSTENCYNVVLTNGQTICADRVMLATGRVPN-TTGLGLERAGVKVN 303

Query: 251 TDGMLMVDENLRVKGQKNIFAIGDITD 277
             G ++VDE +      +I+A+GD+T 
Sbjct: 304 EFGAVVVDEKMTT-NVSHIWAVGDVTG 329

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 14/147 (9%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
             + +VG G  GVEL G    +          L       L    P   +  ++ + ++ 
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAK-----THLFEMFDAPLPSFDPMISETLVEVMNAEG 222

Query: 194 VDVKLGQRVN-LDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDW-LKDTILKDSLD 250
             +        +   ++GS T     G +   DC     G +P   +  L+   +K   +
Sbjct: 223 PQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVK--TN 280

Query: 251 TDGMLMVDENLRVKGQKNIFAIGDITD 277
             G ++VD+       + I+A+GD T 
Sbjct: 281 EKGYIVVDKYQNT-NIEGIYAVGDNTG 306

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 29/208 (13%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATG---HKDPVPKTRTER--LNQYQAENQKIKSARSILI 141
           I  + V  A G+      L++A G       VP    +    +    E    +   ++++
Sbjct: 161 IDNHTV-EAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVV 219

Query: 142 VGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD 195
           VGG  T VE        G        ++  ++ +   L      +     LD +  + ++
Sbjct: 220 VGGSKTAVEYGCFFNATG--------RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGME 271

Query: 196 VKLGQRV-NLDSVSEGSDTYLTSTGD----TIKADCHFLCTG-KPVGSDWLKDTILKDSL 249
           +  G  V  ++  + G    + +        I+ D  FL  G +P  ++  K   L   L
Sbjct: 272 IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLD--L 329

Query: 250 DTDGMLMVDENLRVKGQKNIFAIGDITD 277
              G ++V+E L+     N++A+GD+  
Sbjct: 330 GPKGEVLVNEYLQTS-VPNVYAVGDLIG 356

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
           + + I+G G  G+ELAG       +     VT+V    RLL    P       + + ++ 
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSE-----VTVVALEDRLLFQFDPLLSATLAENMHAQG 221

Query: 194 VDVKLGQRVN-LDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDW-LKDTILKDSLD 250
           ++  L   V  L+  ++G+             D      G  P   D  L+   ++  + 
Sbjct: 222 IETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIE--VQ 279

Query: 251 TDGMLMVDENLRVKGQKNIFAIGDITD 277
           ++GM+  D          ++A+GDIT 
Sbjct: 280 SNGMVPTDAYQNT-NVPGVYALGDITG 305

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 40/289 (13%), Positives = 102/289 (35%), Gaps = 64/289 (22%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVIN 69
             K++ +       + V ++     + D   I P+E+ EI    +       +       
Sbjct: 28  ARKQIALFDNNTNRNRVTQNSHGFITRDG--IKPEEFKEIGLNEVMK-----YP------ 74

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD---PVPKTRTERLNQ- 125
            + +     +V     +    E++T +  + + + +++ATG ++    +P  R E   + 
Sbjct: 75  -SVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVR-EYYGKS 132

Query: 126 ---------YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF 176
                    ++ ++Q +      +I+           ++  ++    + +   G+ L   
Sbjct: 133 LFSCPYCDGWELKDQPL------IIISENEDHTLHMTKLVYNW-STDLVIATNGNEL--- 182

Query: 177 IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GSDTYLTS----TGDTIKADCHFLC 230
                    +D L +K +       V  +S+    G   YL      +G  I+    F+ 
Sbjct: 183 -----SQTIMDELSNKNI------PVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIV 231

Query: 231 TGKPVGSDWLKDTILKDSLDTDGMLMVDENLR--VKGQKNIFAIGDITD 277
                 + +++    +  L ++G  ++D+  R   K    I+  G+ T 
Sbjct: 232 PTFFRPNQFIEQLGCE--LQSNGTFVIDDFGRTSEKN---IYLAGETTT 275

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 22/127 (17%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTL------------IDPKEYFEITWASLRAMVE 59
              RV +IGGG +G+ +   +   A+ T             +D +  FE      +A  E
Sbjct: 162 AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQE 221

Query: 60  ------PSFGERSVINHTDYL---VNGRIVASPAI-NITENEVLTAEGRRVVYDYLVIAT 109
                 P  G   ++     L     G + A P     +   +  A+G    +D ++  T
Sbjct: 222 GREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCT 281

Query: 110 GHKDPVP 116
           G +  + 
Sbjct: 282 GFRPALS 288

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 49/332 (14%), Positives = 91/332 (27%), Gaps = 88/332 (26%)

Query: 15  RVVVIGGGVAGSLVAKSLQ-----F-----SADV-----------TLIDPKEYFEITWAS 53
            VVVIGGG +G      L+     +      A              L  P  +  I    
Sbjct: 5   DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSI---P 61

Query: 54  LRAMVE--PSFGERSVINHTDYLVNGRIVASPAINITEN-------------EVLTAEGR 98
              M      +  R+ +    YL   +     A+ +                 V+  +GR
Sbjct: 62  GWPMPASQGPYPARAEV--LAYL--AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR 117

Query: 99  RVVYDYLVIATGH-KDP----VPKTRTERLNQYQA---ENQKIKSARSILIVGGGPTGVE 150
           + +   ++ ATG   +          +    Q  +         +   + I+GGG +G +
Sbjct: 118 QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQ 177

Query: 151 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE- 209
           +  E++     +   +         F+      + L    +++   +   R         
Sbjct: 178 ILAEVSTV--AETTWIT---QHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGF 232

Query: 210 ----GSDTYL-----------------------TSTGDTIKADCHFLCTGKPVGSDWLKD 242
                    L                        + G     D    CTG       LK 
Sbjct: 233 GDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKG 292

Query: 243 TILKDSLDTDGMLMVD-ENLRVKGQKNIFAIG 273
               D +   G + VD   LR     +++ +G
Sbjct: 293 ---LDLVTPQGQVEVDGSGLRALAVPSVWLLG 321

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 49.4 bits (119), Expect = 7e-07
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 44/164 (26%)

Query: 139 ILIVGGGPTGVE----LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTL-DWLISKK 193
           ++ +GGG +G      ++         K VT++    +          +      +  + 
Sbjct: 158 VVTIGGGNSGAIAAISMSE-YV-----KNVTIIEYMPKY------MC-ENAYVQEIKKRN 204

Query: 194 VDVKLGQRVNLDSVSE---GSDTYLTS-------TGD--TIKADCHFLCTGKPVGSDWLK 241
           +   +      ++      G    +T        TG+   I+ D  F+  G    + +LK
Sbjct: 205 IPYIM------NAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLK 258

Query: 242 DTILKDSLDTDGMLMVDENLR--VKGQKNIFAIGDITDIREIKQ 283
           D+ +K  LD  G ++VD   R  V G   ++A GD+T      Q
Sbjct: 259 DSGVK--LDERGYIVVDSRQRTSVPG---VYAAGDVTS-GNFAQ 296

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 43/306 (14%), Positives = 88/306 (28%), Gaps = 57/306 (18%)

Query: 11  GKNKRVVVIGGGVAG---SLVAKSLQFSADVTLIDPKEYF--EITWASLRAMVEPSFGER 65
             + RV+V+G G +G   +       +  DV L +        +T  S            
Sbjct: 389 ESDARVLVVGAGPSGLEAARALGVRGY--DVVLAEAGRDLGGRVTQESA-----LPGLSA 441

Query: 66  SVINHTDYLVNGRIVASPAINITENEVLTAEG-RRVVYDYLVIATG---------HKDPV 115
                 +Y     +   P + I     +T +      +++++ ATG              
Sbjct: 442 -WGRVKEYREA-VLAELPNVEIYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTT 499

Query: 116 PKTRTERLNQYQAE---NQKIKSARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKG 170
                E +     +     ++   + +++         L G +A    +K  +V++V  G
Sbjct: 500 ALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDD--HYYLGGVVAELLAQKGYEVSIVTPG 557

Query: 171 SRLLEFIGPKAGDKTL-DWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD---TIKADC 226
           +++  +         +   LI   V         + +V  G  T   +       ++ D 
Sbjct: 558 AQVSSWTNNTFEVNRIQRRLIENGVARVTD--HAVVAVGAGGVTVRDTYASIERELECDA 615

Query: 227 HFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDIT---DIRE-I 281
             + T   P          L   L                  ++  IGD      I   +
Sbjct: 616 VVMVTARLP-------REELYLDLVARR--------DAGEIASVRGIGDAWAPGTIAAAV 660

Query: 282 KQGFLA 287
             G  A
Sbjct: 661 WSGRRA 666

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 51/329 (15%), Positives = 86/329 (26%), Gaps = 76/329 (23%)

Query: 11  GKNKRVVVIGGGVAG---SLVAKSLQFSADVTLIDPKEYF--EITWASLRAMVEPSFGER 65
                V+++G G +G   + V     +   V L D  E     +   +            
Sbjct: 387 KNKDSVLIVGAGPSGSEAARVLMESGY--TVHLTDTAEKIGGHLNQVAA-----LPGLGE 439

Query: 66  SVINHTDYLVN---GRIVASPAINI-TENEVLTAEG-RRVVYDYLVIATG---------- 110
               H DY        +  +    +    + +TA+   +   D ++IATG          
Sbjct: 440 -WSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNC 498

Query: 111 -HKDPVPKTRTERLNQYQAE---NQKIKSARSILIVGGGPTGVELAGEIAVDFPE--KKV 164
              DP+P       +Q   E   + K K  + ++I+        +A  +A        +V
Sbjct: 499 LTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNAD--TYFMAPSLAEKLATAGHEV 556

Query: 165 TLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD---- 220
           T+V                  +  L    V+           +  G        GD    
Sbjct: 557 TIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFC--SRIEPGRMEIYNIWGDGSKR 614

Query: 221 -----------------TIKADCHFLCTG-KPVGSDWLKDTILKDSLDTDGMLMVDENLR 262
                             I+ D   L TG          +  L + L             
Sbjct: 615 TYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS-------ECTLWNELKARES-----EWA 662

Query: 263 VKGQKNIFAIGDITDIRE----IKQGFLA 287
               K I+ IGD    R        G   
Sbjct: 663 ENDIKGIYLIGDAEAPRLIADATFTGHRV 691

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 43/232 (18%)

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK--------TRTE 121
           +   +   +   +        E+L           ++IA G+K   P         +  E
Sbjct: 117 NRILIKGTKDNNNKDNGPLNEEILEG-------RNILIAVGNKPVFPPVKGIENTISSDE 169

Query: 122 RLNQYQAENQKIKSARSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIG 178
             N        IK ++ I IVG G   VEL      + +D       +  +G+R+L    
Sbjct: 170 FFN--------IKESKKIGIVGSGYIAVELINVIKRLGID-----SYIFARGNRILRKFD 216

Query: 179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD----TIKADCHFLCTG-K 233
               +   + +    +++     V    + + SD  L+            D    C G  
Sbjct: 217 ESVINVLENDMKKNNINIVTFADV--VEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRS 274

Query: 234 PVGSDW-LKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG 284
           P   +  L+   ++   + +  ++VDEN R     NI+A+GD   +++ K+ 
Sbjct: 275 PDTENLKLEKLNVE--TN-NNYIVVDENQRTS-VNNIYAVGDCCMVKKSKEI 322

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 19/150 (12%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
           + +++VG G  G+ELAG    +  +       LV +G  +L        +   D  + + 
Sbjct: 186 KKVVVVGAGYIGIELAGVFHGLGSE-----THLVIRGETVLRKFDECIQNTITDHYVKEG 240

Query: 194 VDVKLGQRVNLDSVSEGSDT-----YLTSTGDTIKADCHFLCTG-KPVGSDWLKDTILKD 247
           ++V    ++    V +  +T     ++  +      D      G K       ++  +K 
Sbjct: 241 INVHKLSKI--VKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIK- 297

Query: 248 SLDTDGMLMVDENLRVKGQKNIFAIGDITD 277
            L++   ++ DE        NI+++GD+  
Sbjct: 298 -LNSHDQIIADEYQNT-NVPNIYSLGDVVG 325

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 47/160 (29%)

Query: 139 ILIVGGGPTGVE----LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTL-DWLIS-K 192
           + ++GGG +GVE    LAG I      + VTL+     +      KA D+ L D L S K
Sbjct: 147 VAVIGGGNSGVEAAIDLAG-IV-----EHVTLLEFAPEM------KA-DQVLQDKLRSLK 193

Query: 193 KVDVKLGQRVNLDSVSE---GSDTYLTS-------TGDT--IKADCHFLCTG-KPVGSDW 239
            VD+ L      ++ +    G  + +         +GD   I+    F+  G  P  ++W
Sbjct: 194 NVDIIL------NAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPN-TNW 246

Query: 240 LKDTILKDSLDTDGMLMVDENLR--VKGQKNIFAIGDITD 277
           L+  +     +  G +++D      VKG   +FA GD T 
Sbjct: 247 LEGAV---ERNRMGEIIIDAKCETNVKG---VFAAGDCTT 280

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 62/342 (18%), Positives = 107/342 (31%), Gaps = 92/342 (26%)

Query: 2   ESQRQQQSEGKNKRVVVIGGGVAG---SLVAKSLQFSADVTLIDPKEY----FEITWASL 54
           E++       + K + V+G G AG   ++ A +      VTL D        F I     
Sbjct: 362 ETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGH--QVTLFDAHSEIGGQFNI----- 414

Query: 55  RAMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---H 111
            A   P  G+        Y    R++    + +  N  +TA+  +  +D  ++A+G    
Sbjct: 415 -AKQIP--GKEEFYETLRYYR--RMIEVTGVTLKLNHTVTADQLQ-AFDETILASGIVPR 468

Query: 112 KDPVPKTRTERLNQY-QAENQKIKSARSILIVGGGPTGVELA------------------ 152
             P+      ++  Y      K      + I+G G  G + A                  
Sbjct: 469 TPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFC 528

Query: 153 GEIAVDF------------------PEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKV 194
            E  +D                   P + V L  K S+  + +G   G      L+S+ V
Sbjct: 529 NEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGV 588

Query: 195 DVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTG-KPVGSDWLKDTILKDSLDT 251
            +  G  V+   + +    ++   G+   +  D   +C G +P       +  L   L  
Sbjct: 589 KMIPG--VSYQKIDDDG-LHVVINGETQVLAVDNVVICAGQEP-------NRALAQPLID 638

Query: 252 DGMLMVDENLRVKGQKNIFAIGDITDIRE------IKQGFLA 287
            G             K +  IG      E      I QG   
Sbjct: 639 SG-------------KTVHLIGGCDVAMELDARRAIAQGTRL 667

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 33/218 (15%)

Query: 77  GRIV-ASPAINITENEVLTAEG--RRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           G ++ ++P +     +   A+G       D +++ATG            L   Q + ++I
Sbjct: 117 GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATG-------ASPRILPSAQPDGERI 169

Query: 134 KSAR----------SILIVGGGPTGVELA---GEIAVDFPEKKVTLVHKGSRLLEFIGPK 180
            + R           +++VG G TG E      E+ V      VT+V     +L +    
Sbjct: 170 LTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGV-----PVTVVASQDHVLPYEDAD 224

Query: 181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDW 239
           A     +    + V +    R    + +        + G T++     +  G  P  S  
Sbjct: 225 AALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGL 284

Query: 240 -LKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDIT 276
            L+   ++  L     L VD   R      I+A GD T
Sbjct: 285 GLERVGIQ--LGRGNYLTVDRVSRTL-ATGIYAAGDCT 319

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 37/225 (16%), Positives = 79/225 (35%), Gaps = 50/225 (22%)

Query: 77  GRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HKDPVPK-----TRTERLNQYQA 128
            +I     + +  +E    +       Y++IA+G    K  +P      T  +      +
Sbjct: 111 VKIKDPTHVIVKTDE---GKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTS 167

Query: 129 ENQKIKSARSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEF---IGP 179
             +  +    ++I+G G  G+E+A      G         +  ++       E       
Sbjct: 168 FRKLPQD---MVIIGAGYIGLEIASIFRLMG--------VQTHII-------EMLDRALI 209

Query: 180 KAGDKTL--DWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD-----TIKADCHFLCTG 232
              D+ +    L   K+++K    V      +  +  +  +       +I  +   L  G
Sbjct: 210 TLEDQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAG 269

Query: 233 -KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDIT 276
            +PV  +  ++  L   +   G ++VDE ++     N+FA GD  
Sbjct: 270 RRPVIPEGAREIGLS--ISKTG-IVVDETMKTN-IPNVFATGDAN 310

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 22/155 (14%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
              +IVG G   VE+AG    +         +L+ +  ++L            + L +  
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSK-----TSLMIRHDKVLRSFDSMISTNCTEELENAG 242

Query: 194 VDVKLGQRVN---------LDSVSEGSDTYLTSTGDTIKADCHFLCTG-KPVGSDW-LKD 242
           V+V    +V            S+       L         DC     G  P   D  L  
Sbjct: 243 VEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNK 302

Query: 243 TILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITD 277
             ++   D  G ++VDE       K I+A+GD+  
Sbjct: 303 LGIQ--TDDKGHIIVDEFQNT-NVKGIYAVGDVCG 334

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 39/158 (24%)

Query: 137 RSILIVGGGPTGVE----LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTL-DWLIS 191
           + + ++GGG +GVE    LAG I      + VTL+     +      KA D+ L D + S
Sbjct: 356 KRVAVIGGGNSGVEAAIDLAG-IV-----EHVTLLEFAPEM------KA-DQVLQDKVRS 402

Query: 192 -KKVDVKLGQRVNLDSVSEGSDTYLTS-------TGDT--IKADCHFLCTGKPVGSDWLK 241
            K VD+ L  +     V +G  + +         +GD   +     F+  G    + WL+
Sbjct: 403 LKNVDIILNAQT--TEV-KGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLE 459

Query: 242 DTILKDSLDTDGMLMVDENLR--VKGQKNIFAIGDITD 277
             +     +  G +++D      VKG   +FA GD T 
Sbjct: 460 GAL---ERNRMGEIIIDAKCETSVKG---VFAAGDCTT 491

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 Length = 274

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 12  KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINH 70
           K+KR+++IGGG V  + + K +     +TL+ P  +  I     + +      +      
Sbjct: 12  KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAK 71

Query: 71  TDYLVNGRIVASPAINIT----ENEVLTAEGRRVVYDYLVIATGHKD 113
                N     +          ++E L  E     +  ++       
Sbjct: 72  RFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHP 118

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 48/211 (22%), Positives = 79/211 (37%), Gaps = 46/211 (21%)

Query: 91  EVLTAEGRRVVYDYLVIATGH------KDPVPKTRTERLNQ---YQAENQKIKSARSILI 141
           E  T  G       ++IA G       K P              Y  ++ +    + ++I
Sbjct: 109 ETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVI 168

Query: 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-KVDVKLGQ 200
           VGGG + ++    +  +     VTLVH   R  EF G       ++   +   +DV L  
Sbjct: 169 VGGGDSALDWTVGLIKN--AASVTLVH---RGHEFQGHGKTAHEVERARANGTIDVYLET 223

Query: 201 RVNLDSVSEGSDTYLTS------TGDT--IKADCHFLCTG-----KPVGSDWLKDTILKD 247
            V   S+ E S+  LT        G    ++AD   +  G      P+ + W        
Sbjct: 224 EVA--SI-EESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPL-ARW-------- 271

Query: 248 SLDTD-GMLMVDENLR--VKGQKNIFAIGDI 275
            L+     L+VD +++  V G   ++A GDI
Sbjct: 272 DLELYENALVVDSHMKTSVDG---LYAAGDI 299

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 43/221 (19%)

Query: 91  EVLTAEGRRVVYDYLVIATGHKDPVPKT----RTERLN----QYQAENQKIKSARSILIV 142
           +V T++G       ++IA G     P+                Y  +++     + +LIV
Sbjct: 99  KVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLIV 158

Query: 143 GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-KVDVKLGQR 201
           GGG + V+ A  +  D   +++TL+H   R  +F   +A  K L     + +++V     
Sbjct: 159 GGGDSAVDWALNLL-DTA-RRITLIH---RRPQFRAHEASVKELMKAHEEGRLEVLTPYE 213

Query: 202 VNL---DSVSEGSDTYLTSTGDT--IKADCHFLCTG-----KPVGSDWLKDTILKDSLDT 251
           +     D     +  +   T +   ++ D   +  G      P+ ++W         L  
Sbjct: 214 LRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPL-ANW--------GLAL 264

Query: 252 D-GMLMVDENLR--VKGQKNIFAIGDITD----IREIKQGF 285
           +   + VD  +   + G   ++A GDI      +  I  GF
Sbjct: 265 EKNKIKVDTTMATSIPG---VYACGDIVTYPGKLPLIVLGF 302

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 36/205 (17%), Positives = 62/205 (30%), Gaps = 44/205 (21%)

Query: 91  EVLTAEGRRVVYDYLVIATGHKD---PVPKTRTERLNQ----------YQAENQKIKSAR 137
            V    GRR     L++A G  D    +   R ER             Y+ +  KI    
Sbjct: 90  IVEIDGGRRETAGRLILAMGVTDELPEIAGLR-ERWGSAVFHCPYCHGYELDQGKI---- 144

Query: 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVK 197
              ++   P  +  A  +  D+  +     +                    L ++ V   
Sbjct: 145 --GVIAASPMAIHHALMLP-DWG-ETTFFTNGIVEP--------DADQHALLAARGV--- 189

Query: 198 LGQRVNLDSVSE--GSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDG-M 254
              RV    + E  G    + + G +I     F      +  DW++           G  
Sbjct: 190 ---RVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGST 246

Query: 255 LMVDENLR--VKGQKNIFAIGDITD 277
           ++ D   +   +G   IFA GD+  
Sbjct: 247 IVTDPMKQTTARG---IFACGDVAR 268

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Length = 550

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 3  SQRQQQSEGKNKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEI-----TWAS 53
            R     GK  +++++GGG AG + A    K+LQ +AD+TL+   +   +     T  +
Sbjct: 15 VPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPN 74

Query: 54 LRAMVE--PSFGERSVINHTD 72
          L+          E   +   +
Sbjct: 75 LQTAFFDFLGIPEDEWMRECN 95

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGERSV 67
           ++ + K VV+IG G+ G               ++D +         L   VE   G    
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG-LDKLPEAVERHTGS--- 56

Query: 68  INHTDYLVNG--RIVASPAINITENEVLTAEGRRV 100
               D  +     IVASP I +    +  A    +
Sbjct: 57  --LNDEWLMAADLIVASPGIALAHPSLSAAADAGI 89

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 58/226 (25%)

Query: 77  GRIVASPAINIT-ENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKS 135
            R ++   + +    E L A        Y++IATG   P+           Q + +++ +
Sbjct: 111 ARFLSERKVLVEETGEELEA-------RYILIATGSA-PLI------PPWAQVDYERVVT 156

Query: 136 AR----------SILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEF--- 176
           +            +++VGGG  G+EL       G         +V ++       E+   
Sbjct: 157 STEALSFPEVPKRLIVVGGGVIGLELGVVWHRLG--------AEVIVL-------EYMDR 201

Query: 177 IGPKAGD---KTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG 232
           I P       +  + +  K+ + ++ G RV                G+ ++AD   +  G
Sbjct: 202 ILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVG 261

Query: 233 -KPVGSDW-LKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDIT 276
            +P      L++  L    D  G + VDE+LR +   +I+AIGD+ 
Sbjct: 262 RRPYTEGLSLENAGLS--TDERGRIPVDEHLRTR-VPHIYAIGDVV 304

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.98
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.97
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.97
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.97
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.97
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.97
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.97
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.96
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.96
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.96
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.95
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.93
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.93
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.93
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.92
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.84
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.65
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.63
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.51
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.46
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.37
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.34
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.33
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.24
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.18
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.18
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.14
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.13
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.1
3dme_A	369	Conserved exported protein; structural genomics, P	99.1
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.08
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.08
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.06
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.06
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.99
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.99
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.98
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.97
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.97
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.92
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.92
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.92
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.91
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.91
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.9
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.89
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.89
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.87
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.85
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.85
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.83
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.83
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.83
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.77
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.77
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.77
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.77
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.75
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.74
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.73
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.73
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.73
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.71
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.71
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.7
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.69
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.68
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.67
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.67
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.66
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.64
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.63
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.63
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.62
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.62
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.61
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.6
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.59
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.59
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.58
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.58
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.58
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.57
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.56
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.55
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.55
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.55
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.54
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.53
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.53
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.52
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.51
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.5
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.5
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.49
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.49
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.48
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.47
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.46
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.46
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.46
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.46
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.45
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.45
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.44
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.44
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.42
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.41
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.41
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.41
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.41
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.41
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.4
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.4
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.4
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.39
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.39
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.38
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.38
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.38
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.38
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.37
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.36
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.35
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.35
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.34
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.33
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.31
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.29
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.29
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.28
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.26
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.24
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.24
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.22
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.2
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.2
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.18
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.16
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.15
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.14
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.12
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.12
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.11
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.11
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.11
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.1
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.1
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.09
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.09
3atr_A	453	Conserved archaeal protein; saturating double bond	98.08
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.06
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.05
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.04
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.04
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.03
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.03
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.02
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.99
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.99
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.99
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.99
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.99
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.98
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.98
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.98
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.98
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.98
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.97
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.97
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.96
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.94
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.94
3atr_A	453	Conserved archaeal protein; saturating double bond	97.93
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.93
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.92
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.92
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.92
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.89
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.88
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.88
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.88
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.86
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.85
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.83
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.82
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.81
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.8
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.8
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.8
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.79
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.77
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.77
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.76
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.76
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.76
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.76
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.76
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.74
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.74
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.73
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.73
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.72
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.71
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.71
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.7
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.69
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.69
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	97.69
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.68
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.67
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.66
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.65
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.65
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.65
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.64
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.63
4dna_A	463	Probable glutathione reductase; structural genomic	97.62
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.61
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.6
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.59
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.58
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.58
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.57
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.55
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.49
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.49
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.48
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.47
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.46
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.46
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.45
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.44
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.43
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.43
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.4
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.38
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.38
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.38
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.36
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.31
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.29
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.2
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.2
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.2
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.11
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.11
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.11
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.1
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.89
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.88
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.87
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.87
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.78
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.65
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.43
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.32
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	96.26
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.17
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.98
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	95.88
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	95.84
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.8
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.61
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.54
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.53
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.52
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.4
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.4
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.26
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.22
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.11
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.04
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	94.92
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.71
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	94.59
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	94.48
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.47
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.41
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.37
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.28
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	94.2
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	94.13
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	94.07
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	94.06
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	94.01
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.0
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.9
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	93.82
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	93.68
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.68
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.64
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	93.55
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	93.46
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.4
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	93.4
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	93.37
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	93.36
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.34
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	93.23
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.17
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	93.17
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	93.12
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	93.01
3qha_A	296	Putative oxidoreductase; seattle structural genomi	92.99
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	92.97
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	92.93
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.84
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	92.81
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.71
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.69
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.65
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	92.51
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.48
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.43
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	92.41
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	92.41
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.39
3dme_A	369	Conserved exported protein; structural genomics, P	92.34
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.32
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	92.08
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	92.06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	92.06
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.06
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	92.05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	92.05
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	91.98
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	91.95
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	91.87
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	91.85
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.78
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	91.72
3tl2_A	315	Malate dehydrogenase; center for structural genomi	91.68
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	91.67
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.6
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.58
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.57
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	91.53
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	91.52
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	91.51
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.51
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.49
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	91.47
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.44
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	91.41
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.41
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	91.39
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	91.34
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	91.33
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.29
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.28
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.27
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.22
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.18
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.17
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	91.17
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.15
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	91.14
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.14
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	91.13
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	91.09
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.06
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.04
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	90.94
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	90.89
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.87
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.85
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.83
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	90.83
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.8
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	90.76
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	90.64
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	90.6
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	90.51
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.47
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.46
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	90.42
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.38
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	90.38
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	90.36
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	90.36
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	90.19
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.16
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.11
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	90.1
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	90.09
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.08
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	90.07
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	90.04
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.01
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	89.97
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	89.87
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	89.84
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	89.82
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	89.81
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.77
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	89.76
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	89.75
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.74
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.64
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	89.57
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	89.52
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.39
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.25
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	89.21
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	89.21
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	89.17
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	89.14
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	89.13
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	88.92
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	88.89
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.74
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.69
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	88.69
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	88.6
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.48
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	88.44
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	88.43
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	88.39

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=1.1e-49  Score=376.37  Aligned_cols=340  Identities=17%  Similarity=0.273  Sum_probs=255.9

Q ss_pred             ceEEEECCChHHHHHHHHccc-C--CcEEEEcCCCCccccccccccccCCccccc---ceecccccc--ccceEEE-eee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFGER---SVINHTDYL--VNGRIVA-SPA   84 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~-g--~~V~lie~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~-~~~   84 (369)
                      ++|||||||+||++||.+|++ |  .+|+|||+++++.+....+...........   .......++  .++++.. .++
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   80 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEV   80 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeE
Confidence            479999999999999999863 4  689999999877654433332222111111   111111222  2456643 457


Q ss_pred             eeeecc--eEEec-----CCeEEeccEEEEccCCCCCCCCChHH------HHHHHHHHHH--HHhcCCeEEEEcCChhHH
Q 046865           85 INITEN--EVLTA-----EGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQ--KIKSARSILIVGGGPTGV  149 (369)
Q Consensus        85 ~~~~~~--~v~~~-----~g~~~~~d~lviAtG~~~~~p~~~~~------~~~~~~~~~~--~~~~~~~v~vvG~G~~g~  149 (369)
                      +.+|..  .+.+.     ++.++.||+||||||++|..|+++..      .+.+...+..  ....+++++|+|+|++|+
T Consensus        81 ~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~  160 (437)
T 4eqs_A           81 IAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSL  160 (437)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHH
T ss_pred             EEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchh
Confidence            777653  33322     23468999999999999888876421      2333333322  234588999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEE
Q 046865          150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFL  229 (369)
Q Consensus       150 e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~  229 (369)
                      |+|..+.+.  +.+|+++++.+++++.+++++.+.+.+.++++||++++++.|.+++..    .+++++|+++++|.|++
T Consensus       161 E~A~~l~~~--g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~----~v~~~~g~~~~~D~vl~  234 (437)
T 4eqs_A          161 EVLENLYER--GLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGN----EITFKSGKVEHYDMIIE  234 (437)
T ss_dssp             HHHHHHHHH--TCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT----EEEETTSCEEECSEEEE
T ss_pred             hhHHHHHhc--CCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCC----eeeecCCeEEeeeeEEE
Confidence            999999854  899999999999999999999999999999999999999999887532    47788999999999999


Q ss_pred             cCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHHHHHH
Q 046865          230 CTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       230 a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~i~~~  301 (369)
                      |+|++||++++...++  .++++|+|.||+++|| +.|||||+|||++.+.        +++++.|.+||+++|+||+  
T Consensus       235 a~G~~Pn~~~~~~~gl--~~~~~G~I~vd~~~~T-s~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~--  309 (437)
T 4eqs_A          235 GVGTHPNSKFIESSNI--KLDRKGFIPVNDKFET-NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIA--  309 (437)
T ss_dssp             CCCEEESCGGGTTSSC--CCCTTSCEECCTTCBC-SSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHH--
T ss_pred             EeceecCcHHHHhhhh--hhccCCcEecCCCccC-CCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHc--
Confidence            9999999998876655  6789999999999998 7999999999987643        2468899999999999998  


Q ss_pred             hhCCCcccccccc-------CCCcEEEEeecCCCceE------EcCc----ccccccccceecccccchHHHHHHcCCCC
Q 046865          302 MVGERESKMATYW-------PHSAIAIVSLGRKDAVA------QLPF----MTTIGCVPGLIKSRDLFVGKTRKQMGLEP  364 (369)
Q Consensus       302 ~~g~~~~~~~~~~-------~~~~~~~v~lg~~~~~~------~~~~----~~~~g~~~~~~k~~~~~~~~~~~ilG~~~  364 (369)
                        |.+..+...|.       .+|+++.+|+++.++..      .+..    ..+.|...+++|+  ++++++++|||+|+
T Consensus       310 --g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~d~~~~~ilGa~~  385 (437)
T 4eqs_A          310 --GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRV--YYDTSNRQILRAAA  385 (437)
T ss_dssp             --SCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEE--EEETTTCBEEEEEE
T ss_pred             --CCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEE--EEECCCCEEEEEEE
Confidence              54432222221       36899999998887632      1111    1245677889999  99999999999999


Q ss_pred             CccC
Q 046865          365 DVAH  368 (369)
Q Consensus       365 ~~~~  368 (369)
                      +|.|
T Consensus       386 ~g~~  389 (437)
T 4eqs_A          386 VGKE  389 (437)
T ss_dssp             EESS
T ss_pred             ECcC
Confidence            9987

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=9.4e-50  Score=383.13  Aligned_cols=346  Identities=18%  Similarity=0.129  Sum_probs=257.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC--------Cccccc--------ccccc------cc---CC------
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITW--------ASLRA------MV---EP------   60 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~--------~~~~~~--------~~~~~------~~---~~------   60 (369)
                      .|||||||||+||+.||.+++ .|.+|+|||+..        .+|..+        ..+..      ..   ..      
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~  121 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF  121 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence            489999999999999999886 599999999753        244221        11100      00   00      


Q ss_pred             ---cccccceeccc------------ccc--ccceEEEeeeeeeecceEEe------cCCeEEeccEEEEccCCCCCCCC
Q 046865           61 ---SFGERSVINHT------------DYL--VNGRIVASPAINITENEVLT------AEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        61 ---~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~v~~------~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                         .+.........            ..+  .+++++.+.+.+++++++..      .++++++++++|||||++|.+|+
T Consensus       122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P~  201 (542)
T 4b1b_A          122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPD  201 (542)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCCS
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCCC
Confidence               00000000000            001  25789999999999987653      13367999999999999999885


Q ss_pred             C---hHHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCc
Q 046865          118 T---RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       118 ~---~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv  194 (369)
                      .   ......+..........|++++|||||++|+|+|..|+.  .|.+||++.+ +++|+.+|+++++.+++.|++.||
T Consensus       202 ~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~--lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~~~gi  278 (542)
T 4b1b_A          202 DVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNS--LGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQGV  278 (542)
T ss_dssp             SSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEES-SCSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             cccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHh--cCCeEEEecc-cccccccchhHHHHHHHHHHhhcc
Confidence            3   222223344444555679999999999999999999984  5999999987 578899999999999999999999


Q ss_pred             EEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcE-EeCCceeeccCCCeEEec
Q 046865          195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGML-MVDENLRVKGQKNIFAIG  273 (369)
Q Consensus       195 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i-~vd~~l~~~~~~~i~a~G  273 (369)
                      ++++++.+..++..++.+.+.+.+++++++|.|++|+|++||++.|..+.+++.++.++.+ .+|+++|| +.|||||+|
T Consensus       279 ~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T-s~p~IyAiG  357 (542)
T 4b1b_A          279 MFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCT-NIPSIFAVG  357 (542)
T ss_dssp             EEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBC-SSTTEEECT
T ss_pred             eeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccc-cCCCeEEec
Confidence            9999999999887777888888888899999999999999999999998888788776665 77889998 799999999


Q ss_pred             ccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccc-ccccc-----CCCcEEEEeecCCCceE--------EcCcc---
Q 046865          274 DITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESK-MATYW-----PHSAIAIVSLGRKDAVA--------QLPFM---  336 (369)
Q Consensus       274 D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~~~v~lg~~~~~~--------~~~~~---  336 (369)
                      ||++.. +.+++.|.+||+++++||+    +..... .+...     .+|+++.||+++.+|..        .+.+.   
T Consensus       358 Dv~~~~-p~La~~A~~eg~~aa~~i~----g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~~  432 (542)
T 4b1b_A          358 DVAENV-PELAPVAIKAGEILARRLF----KDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNN  432 (542)
T ss_dssp             TSBTTC-CCCHHHHHHHHHHHHHHHH----SCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHCTTTEEEEEC----
T ss_pred             cccCCc-hhHHHHHHHHHHHHHHHHh----cCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCCCCcEEEEEeeccc
Confidence            999652 2378999999999999998    432221 11112     36999999998776531        11110   


Q ss_pred             -------------------cccccccceecccccc-hHHHHHHcCCCCCccCC
Q 046865          337 -------------------TTIGCVPGLIKSRDLF-VGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       337 -------------------~~~g~~~~~~k~~~~~-~~~~~~ilG~~~~~~~~  369 (369)
                                         ...+...||+|+  ++ ++++++|||+|++|.||
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKl--i~~~~~t~~ILGa~ivG~~A  483 (542)
T 4b1b_A          433 LEISAVHRQKHIRAQKDEYDLDVSSTCLAKL--VCLKNEDNRVIGFHYVGPNA  483 (542)
T ss_dssp             -------------------------CCCEEE--EEETTTTTBEEEEEEESTTH
T ss_pred             hhhhhhhhhhhhhcccccccccCCCceEEEE--EEEeCCCCEEEEEEEECCCH
Confidence                               012446789997  64 66899999999999885

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=3.6e-47  Score=364.15  Aligned_cols=336  Identities=23%  Similarity=0.249  Sum_probs=241.2

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccc-cceeccccc----cccceEEEee
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGE-RSVINHTDY----LVNGRIVASP   83 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~   83 (369)
                      ...+++|||||||+||+++|+.|+ ++++|+|||+++++.+.+.. .......... ....+....    ..+++|++++
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL-~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~~  117 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLL-PSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAE  117 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGG-GGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEEE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccch-hHHhhccccHHHhhhhHHHHHHhhcCCeEEEEEE
Confidence            345679999999999999999997 48999999999988764321 1111111111 112222221    2368899999


Q ss_pred             eeeeecc--eEEe--------------------cCCeEEeccEEEEccCCCCCCCCChHH--------HHHHHHHH----
Q 046865           84 AINITEN--EVLT--------------------AEGRRVVYDYLVIATGHKDPVPKTRTE--------RLNQYQAE----  129 (369)
Q Consensus        84 ~~~~~~~--~v~~--------------------~~g~~~~~d~lviAtG~~~~~p~~~~~--------~~~~~~~~----  129 (369)
                      ++.+|..  +|.+                    .++.++.||+||||||+.|..|+++.-        .+.+....    
T Consensus       118 v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l  197 (502)
T 4g6h_A          118 ATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTF  197 (502)
T ss_dssp             EEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHH
T ss_pred             EEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHH
Confidence            9999854  4543                    346789999999999999765544310        11111111    


Q ss_pred             ---HH----------HHhcCCeEEEEcCChhHHHHHHHHhhhC------------CCCeEEEEEcCccccccCCcchHHH
Q 046865          130 ---NQ----------KIKSARSILIVGGGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDK  184 (369)
Q Consensus       130 ---~~----------~~~~~~~v~vvG~G~~g~e~a~~l~~~~------------~~~~v~lv~~~~~~l~~~~~~~~~~  184 (369)
                         .+          ......+++|+|||++|+|+|.+|.+..            ...+|+++++.+++++.+++++++.
T Consensus       198 ~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~  277 (502)
T 4g6h_A          198 AANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSY  277 (502)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHH
T ss_pred             HHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHH
Confidence               11          1123468999999999999999987521            1368999999999999999999999


Q ss_pred             HHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc----EEeccEEEEcCCCCCCchhhcc-cccCCCCCCCCcEEeCC
Q 046865          185 TLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD----TIKADCHFLCTGKPVGSDWLKD-TILKDSLDTDGMLMVDE  259 (369)
Q Consensus       185 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~----~i~~d~vi~a~G~~p~~~~l~~-~~~~~~~~~~g~i~vd~  259 (369)
                      +++.|+++||++++++.|.+++.+.......+.+|+    ++++|++|||+|.+|++..... ..++...+.+|+|.||+
T Consensus       278 ~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~  357 (502)
T 4g6h_A          278 AQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVND  357 (502)
T ss_dssp             HHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCT
T ss_pred             HHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECC
Confidence            999999999999999999998744323344556663    6999999999999998421111 12333567889999999


Q ss_pred             ceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC-----------------ccccccccCCCcEEEE
Q 046865          260 NLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER-----------------ESKMATYWPHSAIAIV  322 (369)
Q Consensus       260 ~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~-----------------~~~~~~~~~~~~~~~v  322 (369)
                      +||++++|||||+|||+..+.+++++.|.+||+++|+||.+..++..                 ..++.+|.......++
T Consensus       358 ~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pF~y~~~G~~a  437 (502)
T 4g6h_A          358 FLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALA  437 (502)
T ss_dssp             TSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHTTSSSCCHHHHHHHTTCCCCCCCCCEEEE
T ss_pred             ccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHHHhccchhhhhhhhccchhhhhhcCCCCCCCEecCcceEE
Confidence            99998899999999999988888999999999999999976432100                 0123345545567899


Q ss_pred             eecCCCceEEcCcc-----ccccccccee
Q 046865          323 SLGRKDAVAQLPFM-----TTIGCVPGLI  346 (369)
Q Consensus       323 ~lg~~~~~~~~~~~-----~~~g~~~~~~  346 (369)
                      +||...|++++...     ...|...|++
T Consensus       438 ~lG~~~av~~~~~~~~~~~~~~G~~a~~~  466 (502)
T 4g6h_A          438 YLGSERAIATIRSGKRTFYTGGGLMTFYL  466 (502)
T ss_dssp             ECSTTCEEEEEEETTEEEEEEEEHHHHHH
T ss_pred             EEeCCceEEEccCCCccceecccHHHHHH
Confidence            99999999887542     2345555543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=1.7e-48  Score=373.90  Aligned_cols=348  Identities=20%  Similarity=0.174  Sum_probs=259.3

Q ss_pred             CcceEEEECCChHHHHHHHHccc--CCcEEEEc--------CCCCcccccccc--------c----------cc----cC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLID--------PKEYFEITWASL--------R----------AM----VE   59 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie--------~~~~~~~~~~~~--------~----------~~----~~   59 (369)
                      +++||+|||||+||++||++|++  |++|+|||        +++.+|..+...        .          ..    +.
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~   85 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWE   85 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence            36899999999999999998854  99999999        244454332110        0          00    00


Q ss_pred             C-----cccccceec------------ccccc--c-cceEEEeeeeeeecceEEec---C-----CeEEeccEEEEccCC
Q 046865           60 P-----SFGERSVIN------------HTDYL--V-NGRIVASPAINITENEVLTA---E-----GRRVVYDYLVIATGH  111 (369)
Q Consensus        60 ~-----~~~~~~~~~------------~~~~~--~-~~~~~~~~~~~~~~~~v~~~---~-----g~~~~~d~lviAtG~  111 (369)
                      .     .+....+..            +...+  . +++++.+++..++.++|.+.   +     ++++.||+||||||+
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATGs  165 (495)
T 2wpf_A           86 FDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGS  165 (495)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCCC
Confidence            0     001000000            00011  2 68889999988988888775   4     678999999999999


Q ss_pred             CCCCCCChHH-HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCC-CCeEEEEEcCccccccCCcchHHHHHHHH
Q 046865          112 KDPVPKTRTE-RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWL  189 (369)
Q Consensus       112 ~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~-~~~v~lv~~~~~~l~~~~~~~~~~~~~~l  189 (369)
                      +|..|+++.. .+.+..........+++++|||+|++|+|+|..|.+.++ +.+|+++++.+++++.+++++.+.+.+.+
T Consensus       166 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l  245 (495)
T 2wpf_A          166 WPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQL  245 (495)
T ss_dssp             EECCCCCTTGGGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHH
T ss_pred             CcCCCCCCCccccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHH
Confidence            9877765422 111222222223457899999999999999999986433 89999999999999999999999999999


Q ss_pred             HhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCC
Q 046865          190 ISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKN  268 (369)
Q Consensus       190 ~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~  268 (369)
                      +++||++++++.|.+++.+++ .+.+++.+|+++++|.||+|+|++|+++++....+++.++++|+|.||+++|| +.|+
T Consensus       246 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t-~~~~  324 (495)
T 2wpf_A          246 TANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRT-NVPN  324 (495)
T ss_dssp             HHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBC-SSTT
T ss_pred             HhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCcc-CCCC
Confidence            999999999999999876543 46788888989999999999999999986644445567888899999999998 7999


Q ss_pred             eEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccccccc-------cCCCcEEEEeecCCCceE--------Ec
Q 046865          269 IFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY-------WPHSAIAIVSLGRKDAVA--------QL  333 (369)
Q Consensus       269 i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~-------~~~~~~~~v~lg~~~~~~--------~~  333 (369)
                      |||+|||++.+  ++++.|.+||+++|.||+    +..... ..|       ..+|+++.+|+++.++..        ..
T Consensus       325 IyA~GD~~~~~--~l~~~A~~~g~~aa~~i~----g~~~~~-~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~v~~~  397 (495)
T 2wpf_A          325 IYAIGDITDRL--MLTPVAINEGAALVDTVF----GNKPRK-TDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMS  397 (495)
T ss_dssp             EEECGGGGCSC--CCHHHHHHHHHHHHHHHH----SSCCCC-CCCSSCEEEECCSSCEEEEECCHHHHHHHSSEEEEEEE
T ss_pred             EEEEeccCCCc--cCHHHHHHHHHHHHHHhc----CCCCCc-CCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEEEEE
Confidence            99999999754  478999999999999998    422111 111       125899999998766532        12


Q ss_pred             Cccc-----ccccccce-ecccccchHHHHHHcCCCCCccCC
Q 046865          334 PFMT-----TIGCVPGL-IKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       334 ~~~~-----~~g~~~~~-~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ++..     ..+...++ +|+  ++++++++|||+|++|.+|
T Consensus       398 ~~~~~~~~~~~~~~~~~~~kl--v~~~~~~~ilG~~~~g~~a  437 (495)
T 2wpf_A          398 SFTPLMHNISGSKYKKFVAKI--VTNHSDGTVLGVHLLGDGA  437 (495)
T ss_dssp             EECCTHHHHHSCTTCCEEEEE--EEETTTCBEEEEEEESTTH
T ss_pred             ecCchhhhhhcCCCcEEEEEE--EEECCCCEEEEEEEECCCH
Confidence            2211     13356789 998  9999999999999999764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=2.4e-48  Score=369.17  Aligned_cols=346  Identities=20%  Similarity=0.221  Sum_probs=257.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc--------------ccccC---Ccc---------cc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL--------------RAMVE---PSF---------GE   64 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~--------------~~~~~---~~~---------~~   64 (369)
                      .++||+|||||++|+++|++|+ .|++|+|||+++ ++..+...              .....   ..+         ..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW   81 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            3689999999999999999986 599999999984 44332110              00000   000         00


Q ss_pred             cceec------------ccccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHH-HHHHHHHH
Q 046865           65 RSVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE-RLNQYQAE  129 (369)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~-~~~~~~~~  129 (369)
                      ..+..            +...+  .+++++.+++..++.+++.+ +++++.||+||+|||++|..|+++.. ...+....
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~~~  160 (450)
T 1ges_A           82 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSDGF  160 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE-TTEEEEEEEEEECCCEEECCCCSTTGGGSBCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE-CCEEEEeCEEEECCCCCCCCCCCCCccceecHHHh
Confidence            00000            00011  26788888888888888877 77889999999999999877765422 11122222


Q ss_pred             HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC
Q 046865          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE  209 (369)
Q Consensus       130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  209 (369)
                      ......+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|.+++.++
T Consensus       161 ~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~  238 (450)
T 1ges_A          161 FALPALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNT  238 (450)
T ss_dssp             HHCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECT
T ss_pred             hhhhhcCCeEEEECCCHHHHHHHHHHHh--cCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC
Confidence            2333458999999999999999999985  48999999999999999999999999999999999999999999987654


Q ss_pred             C-CeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHH
Q 046865          210 G-SDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQ  288 (369)
Q Consensus       210 ~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~  288 (369)
                      + .+.+++.+|+++++|.||+|+|++|+++++....++++++++|+|.||+++|| +.|+|||+|||++.+  ++++.|.
T Consensus       239 ~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~--~~~~~A~  315 (450)
T 1ges_A          239 DGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNT-NIEGIYAVGDNTGAV--ELTPVAV  315 (450)
T ss_dssp             TSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECSGGGTSC--CCHHHHH
T ss_pred             CcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCcc-CCCCEEEEeccCCCC--ccHHHHH
Confidence            3 36788888989999999999999999986533334557788999999999997 799999999999754  3688999


Q ss_pred             HHHHHHHHHHHHHhhCCCcc-cccccc-----CCCcEEEEeecCCCceEEc----------Ccc-----cccccccceec
Q 046865          289 KHAQVAAKNLKVLMVGERES-KMATYW-----PHSAIAIVSLGRKDAVAQL----------PFM-----TTIGCVPGLIK  347 (369)
Q Consensus       289 ~~g~~~a~~i~~~~~g~~~~-~~~~~~-----~~~~~~~v~lg~~~~~~~~----------~~~-----~~~g~~~~~~k  347 (369)
                      +||+++|+||..   +.+.. ..+...     .+|+++.+|+++.++..++          ++.     ...+...+++|
T Consensus       316 ~~g~~aa~~i~~---~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k  392 (450)
T 1ges_A          316 AAGRRLSERLFN---NKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMK  392 (450)
T ss_dssp             HHHHHHHHHHHT---TCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEE
T ss_pred             HHHHHHHHHHcC---CCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHHhcCCCcEEEE
Confidence            999999999983   11111 111111     2588999999876654321          111     12455678999


Q ss_pred             ccccchHHHHHHcCCCCCccCC
Q 046865          348 SRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       348 ~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +  ++++++++|||+|++|.||
T Consensus       393 ~--~~~~~~~~ilG~~~~g~~a  412 (450)
T 1ges_A          393 L--VCVGSEEKIVGIHGIGFGM  412 (450)
T ss_dssp             E--EEETTTTEEEEEEEESTTH
T ss_pred             E--EEECCCCEEEEEEEECCCH
Confidence            8  9999999999999999764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=6e-49  Score=377.00  Aligned_cols=349  Identities=18%  Similarity=0.188  Sum_probs=262.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc---------------------cccc-cCC---ccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---------------------LRAM-VEP---SFGER   65 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~---------------------~~~~-~~~---~~~~~   65 (369)
                      .++||+|||||+||++||.+|+ .|++|+|||+++ +|..+..                     ...+ +..   .....
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   85 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNGK   85 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCHH
Confidence            4589999999999999999986 599999999976 4432110                     0000 000   00000


Q ss_pred             ceeccc---------------cccccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChH---HHHHHHH
Q 046865           66 SVINHT---------------DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---ERLNQYQ  127 (369)
Q Consensus        66 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---~~~~~~~  127 (369)
                      .+..+.               .....++++.+.+.+.+.+++.+.+++++.||+||||||++|..|++..   ..+.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~~~v~t~~  165 (492)
T 3ic9_A           86 AVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTND  165 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTGGGEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccCCcEEcHH
Confidence            000000               0012346788888888988998888899999999999999999886432   1122223


Q ss_pred             HHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccC
Q 046865          128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV  207 (369)
Q Consensus       128 ~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  207 (369)
                      ........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.|++. |++++++.+.+++.
T Consensus       166 ~~~~~~~~~k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~  242 (492)
T 3ic9_A          166 NLFELNDLPKSVAVFGPGVIGLELGQALSR--LGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIE  242 (492)
T ss_dssp             HHTTCSSCCSEEEEESSCHHHHHHHHHHHH--TTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEE
T ss_pred             HHhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEE
Confidence            333333458999999999999999999985  489999999999999999999999999999988 99999999999987


Q ss_pred             CCCCeEEEcC--CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeC-CceeeccCCCeEEecccCCccccc
Q 046865          208 SEGSDTYLTS--TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVD-ENLRVKGQKNIFAIGDITDIREIK  282 (369)
Q Consensus       208 ~~~~~~v~~~--~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd-~~l~~~~~~~i~a~GD~~~~~~~~  282 (369)
                      +++.+.+.+.  +|  +++++|.||+|+|++|+++++....++++++++|+|.|| +++|| +.|+|||+|||++.+.  
T Consensus       243 ~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t-~~~~IyA~GD~~~~~~--  319 (492)
T 3ic9_A          243 KEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQT-SVDHIFVAGDANNTLT--  319 (492)
T ss_dssp             CSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBC-SSTTEEECGGGGTSSC--
T ss_pred             cCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccC-CCCCEEEEEecCCCCc--
Confidence            6666777664  67  689999999999999999986556666688999999999 89998 7999999999997653  


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhCCCc-cccccc--cCCCcEEEEeecCCCceEE-------------cCcc-----ccccc
Q 046865          283 QGFLAQKHAQVAAKNLKVLMVGERE-SKMATY--WPHSAIAIVSLGRKDAVAQ-------------LPFM-----TTIGC  341 (369)
Q Consensus       283 ~~~~A~~~g~~~a~~i~~~~~g~~~-~~~~~~--~~~~~~~~v~lg~~~~~~~-------------~~~~-----~~~g~  341 (369)
                      +++.|..||+++|.||+......+. ....++  ...|+++.+|+++.++...             +++.     ...+.
T Consensus       320 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~  399 (492)
T 3ic9_A          320 LLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGK  399 (492)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccchhhhhcCC
Confidence            6889999999999999853111110 001111  1358999999987765433             1221     13466


Q ss_pred             ccceecccccchHHHHHHcCCCCCccCC
Q 046865          342 VPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       342 ~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..+++|+  ++++++++|||+|++|.||
T Consensus       400 ~~g~~kl--i~~~~~~~ilG~~~~g~~a  425 (492)
T 3ic9_A          400 NKGLLNV--YADRTSGEFLGAEMFGPAA  425 (492)
T ss_dssp             CCCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             CcEEEEE--EEECCCCEEEEEEEECCCH
Confidence            7899998  9999999999999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=5.6e-48  Score=368.16  Aligned_cols=345  Identities=19%  Similarity=0.175  Sum_probs=261.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc---------------------ccc-c---CCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---------------------RAM-V---EPSFGER   65 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~---------------------~~~-~---~~~~~~~   65 (369)
                      .++||+|||||++|+++|+.|+ .|++|+|||+ +.+|..+...                     ..+ +   .+.+...
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWA   82 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHH
Confidence            4689999999999999999997 5999999999 4444322110                     000 0   0001100


Q ss_pred             cee--------c----ccccc--ccceEEEeeeeeeecceEEe-cCCeEEeccEEEEccCCCCC-CCCChHHH-HHHHHH
Q 046865           66 SVI--------N----HTDYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDP-VPKTRTER-LNQYQA  128 (369)
Q Consensus        66 ~~~--------~----~~~~~--~~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lviAtG~~~~-~p~~~~~~-~~~~~~  128 (369)
                      ...        .    +..++  .+++++.+.+..++.+.+.+ .+++.+.||++|+|||+.|. .|.++... ..+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~  162 (463)
T 4dna_A           83 KLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNE  162 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGGCBCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccccccHHH
Confidence            000        0    00111  25788899998998888877 57789999999999999988 77654321 111222


Q ss_pred             HHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC
Q 046865          129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS  208 (369)
Q Consensus       129 ~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  208 (369)
                      .......+++++|+|+|++|+|+|..+..  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+
T Consensus       163 ~~~~~~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~  240 (463)
T 4dna_A          163 AFDLPALPESILIAGGGYIAVEFANIFHG--LGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSAD  240 (463)
T ss_dssp             HTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEC
T ss_pred             HhhhhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEc
Confidence            22223458999999999999999999985  4899999999999999999999999999999999999999999998765


Q ss_pred             CCC-eEEE-cCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHH
Q 046865          209 EGS-DTYL-TSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL  286 (369)
Q Consensus       209 ~~~-~~v~-~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~  286 (369)
                      ++. +.+. +.+|+ +++|.||+|+|++|+++++....++++++++|+|.||+++|| +.|+|||+|||++.+  ++++.
T Consensus       241 ~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~--~~~~~  316 (463)
T 4dna_A          241 ADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRT-STPGIYALGDVTDRV--QLTPV  316 (463)
T ss_dssp             TTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSGGGSSC--CCHHH
T ss_pred             CCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCC-CCCCEEEEEecCCCC--CChHH
Confidence            443 5788 88887 999999999999999998655555667889999999999997 799999999999754  47899


Q ss_pred             HHHHHHHHHHHHHHHhhCCCccc-ccccc-----CCCcEEEEeecCCCce--------EEcCccc-----ccccccceec
Q 046865          287 AQKHAQVAAKNLKVLMVGERESK-MATYW-----PHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVPGLIK  347 (369)
Q Consensus       287 A~~~g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~~~~k  347 (369)
                      |..||+++|+||+    |..... .+...     ..|+++.+|+++.++.        ..+++..     ..+...+++|
T Consensus       317 A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  392 (463)
T 4dna_A          317 AIHEAMCFIETEY----KNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMK  392 (463)
T ss_dssp             HHHHHHHHHHHHH----SSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHHSSEEEEEEEEECCTTHHHHCCCCCEEEE
T ss_pred             HHHHHHHHHHHHc----CCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHcCCCeEEEEEeccccchhhcCCCceEEEE
Confidence            9999999999998    432111 11111     2589999999877653        2222221     3566789999


Q ss_pred             ccccchHHHHHHcCCCCCccCC
Q 046865          348 SRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       348 ~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +  ++++++++|||+|++|.||
T Consensus       393 ~--~~~~~~~~ilG~~~~g~~a  412 (463)
T 4dna_A          393 L--VVNAADRKVVGAHILGHDA  412 (463)
T ss_dssp             E--EEETTTCBEEEEEEESTTH
T ss_pred             E--EEECCCCEEEEEEEECCCH
Confidence            9  9999999999999999764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.2e-48  Score=375.58  Aligned_cols=348  Identities=20%  Similarity=0.245  Sum_probs=257.4

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc-------------------ccC-------Cccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA-------------------MVE-------PSFG   63 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~-------------------~~~-------~~~~   63 (369)
                      ++++||+|||||+||++||..|+ .|++|+|||+++.+|..|.....                   +..       +.+.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  102 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLN  102 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEEC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccC
Confidence            45689999999999999999987 59999999998877653221100                   000       0000


Q ss_pred             ccceecc------------ccc--cccceEEEeeeeeeecce--EEecCC--eEEeccEEEEccCCCCC-CCCCh----H
Q 046865           64 ERSVINH------------TDY--LVNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDP-VPKTR----T  120 (369)
Q Consensus        64 ~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~--v~~~~g--~~~~~d~lviAtG~~~~-~p~~~----~  120 (369)
                      .......            ..+  ..+++++.+.+..+++..  +...+|  .++.||+||||||+.|. +|+..    .
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~~~~~  182 (491)
T 3urh_A          103 LQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDE  182 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCcccccCC
Confidence            0000000            000  125788888888888764  444455  57999999999999854 44432    1


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCc
Q 046865          121 ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      ..+.+..........+++++|||+|++|+|+|..|.+.  +.+|+++++.+++++.+++++.+.+.+.+++.||++++++
T Consensus       183 ~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~  260 (491)
T 3urh_A          183 KTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARL--GAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGA  260 (491)
T ss_dssp             SSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSE
T ss_pred             eeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHc--CCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECC
Confidence            11222233333335689999999999999999999854  8999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCeEEEcCC---C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEeccc
Q 046865          201 RVNLDSVSEGSDTYLTST---G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDI  275 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~  275 (369)
                      ++.+++.+++.+.+.+.+   |  +++++|.||+|+|++|+++++.....++.++++|+|.||+++|| +.|+|||+|||
T Consensus       261 ~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~  339 (491)
T 3urh_A          261 KVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQT-SIAGVYAIGDV  339 (491)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGG
T ss_pred             eEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCC-CCCCEEEEEec
Confidence            999988666655565542   4  58999999999999999988654445567888999999999998 79999999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHHHHhhCCCcccccccc-----CCCcEEEEeecCCCc--------eEEcCccc-----
Q 046865          276 TDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYW-----PHSAIAIVSLGRKDA--------VAQLPFMT-----  337 (369)
Q Consensus       276 ~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-----~~~~~~~v~lg~~~~--------~~~~~~~~-----  337 (369)
                      ++.+  ++++.|..||+++|+||+    |......+...     .+|+++.+|+++.++        +..+++..     
T Consensus       340 ~~~~--~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~  413 (491)
T 3urh_A          340 VRGP--MLAHKAEDEGVAVAEIIA----GQAGHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAYKIGKFPFTANGRAR  413 (491)
T ss_dssp             SSSC--CCHHHHHHHHHHHHHHHT----TSCCCCCTTCCCEEECSSSCEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHH
T ss_pred             CCCc--cchhHHHHHHHHHHHHHc----CCCcccCCCCCCEEEEccCCeEEEeCCHHHHHhCCCCEEEEEEecCcchhhh
Confidence            9765  478999999999999998    43211111111     368999999977654        23333321     


Q ss_pred             ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          338 TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       338 ~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..+...+++|+  ++++++++|||+|++|.||
T Consensus       414 ~~~~~~g~~k~--i~~~~~~~ilG~~~~g~~a  443 (491)
T 3urh_A          414 AMLQTDGFVKI--LADKETDRVLGGHIIGFGA  443 (491)
T ss_dssp             HTTCCCCEEEE--EEETTTCBEEEEEEESTTH
T ss_pred             cCCCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence            34667899999  9999999999999999874

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=2e-47  Score=363.28  Aligned_cols=343  Identities=18%  Similarity=0.172  Sum_probs=250.7

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccc--ccceecccccc--ccceEE-Eeeee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTDYL--VNGRIV-ASPAI   85 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~-~~~~~   85 (369)
                      +||||||||+||++||.+|++   +.+|+|||+++++++.+..+.........  ........+++  .++++. ..++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            699999999999999999863   89999999999887654443333222211  11111111111  145553 45666


Q ss_pred             eeecc--eEEe---cCCeEEeccEEEEccCCCCCCCCChHH---------HHHHHHHHHHHHhcCCeEEEEcCChhHHHH
Q 046865           86 NITEN--EVLT---AEGRRVVYDYLVIATGHKDPVPKTRTE---------RLNQYQAENQKIKSARSILIVGGGPTGVEL  151 (369)
Q Consensus        86 ~~~~~--~v~~---~~g~~~~~d~lviAtG~~~~~p~~~~~---------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~  151 (369)
                      .++..  .+.+   .++.++.||+||+|||++|..|+++..         .+.+..........+++++|+|+|++|+|+
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~  162 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEA  162 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHH
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            66643  4433   245689999999999999877654321         111222233344678999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEc
Q 046865          152 AGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLC  230 (369)
Q Consensus       152 a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a  230 (369)
                      |..|.+  .+.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|.+++..++.+.+.++++ ++++|.||+|
T Consensus       163 A~~l~~--~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A  239 (452)
T 3oc4_A          163 IDFLVK--MKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFA  239 (452)
T ss_dssp             HHHHHH--TTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEEC
T ss_pred             HHHHHh--CCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEEC
Confidence            999985  48999999999999985 8999999999999999999999999999986556667777777 8999999999


Q ss_pred             CCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHHHHHHh
Q 046865          231 TGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       231 ~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~i~~~~  302 (369)
                      +|++|+++++...   +.++++|+|.||++||| +.|+|||+|||++.+.        +++++.|..||+++|+||+   
T Consensus       240 ~G~~p~~~~l~~~---~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~---  312 (452)
T 3oc4_A          240 LNLHPQLAYLDKK---IQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLE---  312 (452)
T ss_dssp             SCCBCCCSSCCTT---SCBCTTSCBCCCTTCBC-SSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSS---
T ss_pred             cCCCCChHHHHhh---hccCCCCCEEECcCccC-CCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhc---
Confidence            9999999887543   36788999999999998 7999999999998652        2478899999999999997   


Q ss_pred             hCCCcccc--ccccC----CCcEEEEeecCCCceE--------EcCcc--cccccccceecccccchHHHHHHcCCCCCc
Q 046865          303 VGERESKM--ATYWP----HSAIAIVSLGRKDAVA--------QLPFM--TTIGCVPGLIKSRDLFVGKTRKQMGLEPDV  366 (369)
Q Consensus       303 ~g~~~~~~--~~~~~----~~~~~~v~lg~~~~~~--------~~~~~--~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~  366 (369)
                       |......  ....|    .++++.+|+++.++..        .+++.  ...+...+++|+  ++++++++|||+|++|
T Consensus       313 -g~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~ilG~~~~g  389 (452)
T 3oc4_A          313 -EKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKL--IYDKVTQRVLGAQLCS  389 (452)
T ss_dssp             -SCCCCCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEE--EEETTTCBEEEEEEEE
T ss_pred             -CCCccCCCccccEEEEEcCeeEEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEE--EEECCCCEEEEEEEEe
Confidence             4321111  11111    3688999998877632        22111  133556799998  9999999999999999


Q ss_pred             c-CC
Q 046865          367 A-HA  369 (369)
Q Consensus       367 ~-~~  369 (369)
                      . +|
T Consensus       390 ~~~a  393 (452)
T 3oc4_A          390 KNNC  393 (452)
T ss_dssp             SSCC
T ss_pred             CCCH
Confidence            7 44

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=1.1e-47  Score=368.00  Aligned_cols=348  Identities=16%  Similarity=0.156  Sum_probs=258.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc--cCCcEEEEc--------CCCCcccccccc---c---------------cc----cC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLID--------PKEYFEITWASL---R---------------AM----VE   59 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~--~g~~V~lie--------~~~~~~~~~~~~---~---------------~~----~~   59 (369)
                      .++||+|||||++|++||++|+  .|++|+|||        +++.+|..+...   .               ..    +.
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~   81 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE   81 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence            3689999999999999999885  499999999        244454332110   0               00    00


Q ss_pred             C-----cccccceec------------ccccc--c-cceEEEeeeeeeecceEEec-----CC---eEEeccEEEEccCC
Q 046865           60 P-----SFGERSVIN------------HTDYL--V-NGRIVASPAINITENEVLTA-----EG---RRVVYDYLVIATGH  111 (369)
Q Consensus        60 ~-----~~~~~~~~~------------~~~~~--~-~~~~~~~~~~~~~~~~v~~~-----~g---~~~~~d~lviAtG~  111 (369)
                      .     .+....+..            +...+  . +++++.+++..++++++.+.     ++   +++.||+||+|||+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs  161 (490)
T 1fec_A           82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGS  161 (490)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCC
Confidence            0     001000000            01111  2 68899999999988877663     56   78999999999999


Q ss_pred             CCCCCCChHH-HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCC-CCeEEEEEcCccccccCCcchHHHHHHHH
Q 046865          112 KDPVPKTRTE-RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWL  189 (369)
Q Consensus       112 ~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~-~~~v~lv~~~~~~l~~~~~~~~~~~~~~l  189 (369)
                      .|..|+++.. .+.+..........+++++|||+|++|+|+|..|.+.++ +.+|+++++.+++++.+++++.+.+.+.+
T Consensus       162 ~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l  241 (490)
T 1fec_A          162 WPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQL  241 (490)
T ss_dssp             EECCCCSBTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCccceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHH
Confidence            9887765422 111222222223457899999999999999999985422 89999999999999999999999999999


Q ss_pred             HhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCC
Q 046865          190 ISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKN  268 (369)
Q Consensus       190 ~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~  268 (369)
                      +++||++++++.|.+++.+++ .+.+++.+|+++++|.||+|+|++|++++|....+++.++++|+|.||++||| +.|+
T Consensus       242 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t-~~~~  320 (490)
T 1fec_A          242 RANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDN  320 (490)
T ss_dssp             HHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTT
T ss_pred             HhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCcc-CCCC
Confidence            999999999999999876543 46788888889999999999999999986543444557888999999999998 7999


Q ss_pred             eEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccccccc-------cCCCcEEEEeecCCCceE--------Ec
Q 046865          269 IFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY-------WPHSAIAIVSLGRKDAVA--------QL  333 (369)
Q Consensus       269 i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~-------~~~~~~~~v~lg~~~~~~--------~~  333 (369)
                      |||+|||++.+  ++++.|.+||+++|+||.    +..... ..|       ..+|+++.+|+++.++..        ..
T Consensus       321 IyA~GD~~~~~--~l~~~A~~~g~~aa~~i~----g~~~~~-~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~~~~~~~~~  393 (490)
T 1fec_A          321 IYAIGDVTDRV--MLTPVAINEGAAFVDTVF----ANKPRA-TDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYES  393 (490)
T ss_dssp             EEECGGGGCSC--CCHHHHHHHHHHHHHHHH----SSCCCC-CCCSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEE
T ss_pred             EEEEeccCCCc--cCHHHHHHHHHHHHHHhc----CCCCCc-CCCCCccEEEECCCCeEEEeCCHHHHHhcCCCEEEEEe
Confidence            99999999753  478999999999999998    422111 111       125889999998766532        11


Q ss_pred             Cccc----c-ccccccee-cccccchHHHHHHcCCCCCccCC
Q 046865          334 PFMT----T-IGCVPGLI-KSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       334 ~~~~----~-~g~~~~~~-k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ++..    . .+...+++ |+  ++++++++|||+|++|.||
T Consensus       394 ~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~ilG~~~~g~~a  433 (490)
T 1fec_A          394 SFTPLMHNISGSTYKKFMVRI--VTNHADGEVLGVHMLGDSS  433 (490)
T ss_dssp             EECCHHHHHHSCTTCCEEEEE--EEETTTTEEEEEEEESTTH
T ss_pred             ecChhhhhhhcCCCeEEEEEE--EEECCCCEEEEEEEECCCH
Confidence            2211    1 33567899 98  9999999999999999764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=1e-47  Score=366.01  Aligned_cols=345  Identities=21%  Similarity=0.244  Sum_probs=256.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------cc---c-cC---Cccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RA---M-VE---PSFGER   65 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~---~-~~---~~~~~~   65 (369)
                      +++||+|||||++|+++|.+|+ .|.+|+|||+++ ++..|...                  ..   + +.   ......
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWP   81 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHH
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            4689999999999999999986 599999999984 44332110                  00   0 00   000000


Q ss_pred             ceec------------ccccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHH-HHHHHHHHH
Q 046865           66 SVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE-RLNQYQAEN  130 (369)
Q Consensus        66 ~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~-~~~~~~~~~  130 (369)
                      .+..            +...+  .+++++.+++..++.++|.+ +++++.||+||+|||+.|..|+++.. .+.+.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~  160 (463)
T 2r9z_A           82 RLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSDGFF  160 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE-TTEEEEEEEEEECCCEEECCCSCTTGGGSBCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE-CCEEEEcCEEEECCCCCCCCCCCCCccceecHHHHh
Confidence            0000            00111  25788888888888888877 77889999999999999877765422 111222222


Q ss_pred             HHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC
Q 046865          131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG  210 (369)
Q Consensus       131 ~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  210 (369)
                      .....+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+++
T Consensus       161 ~~~~~~~~vvVvGgG~~g~e~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~  238 (463)
T 2r9z_A          161 ALQQQPKRVAIIGAGYIGIELAGLLRS--FGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQ  238 (463)
T ss_dssp             HCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETT
T ss_pred             hhhccCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC
Confidence            333457999999999999999999985  489999999999999999999999999999999999999999999876544


Q ss_pred             CeEEEcCCCc-EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHH
Q 046865          211 SDTYLTSTGD-TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQK  289 (369)
Q Consensus       211 ~~~v~~~~g~-~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~  289 (369)
                      .+.+++.+|+ ++++|.||+|+|++|+++++....++++++++|+|.||+++|| +.|||||+|||++.+  .+++.|.+
T Consensus       239 ~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~--~~~~~A~~  315 (463)
T 2r9z_A          239 GTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNT-NVPGVYALGDITGRD--QLTPVAIA  315 (463)
T ss_dssp             EEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBC-SSTTEEECGGGGTSC--CCHHHHHH
T ss_pred             eEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCcc-CCCCEEEEeecCCCc--ccHHHHHH
Confidence            5778888998 8999999999999999986543334557788999999999997 799999999999754  36789999


Q ss_pred             HHHHHHHHHHHHhhCCCccc--ccccc-----CCCcEEEEeecCCCceEE---------cCcc-----cccccccceecc
Q 046865          290 HAQVAAKNLKVLMVGERESK--MATYW-----PHSAIAIVSLGRKDAVAQ---------LPFM-----TTIGCVPGLIKS  348 (369)
Q Consensus       290 ~g~~~a~~i~~~~~g~~~~~--~~~~~-----~~~~~~~v~lg~~~~~~~---------~~~~-----~~~g~~~~~~k~  348 (369)
                      ||+++|.||.    |.....  .+...     .+|+++.+|+++.++..+         .++.     ...+...+++|+
T Consensus       316 ~g~~aa~~i~----g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl  391 (463)
T 2r9z_A          316 AGRRLAERLF----DGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKL  391 (463)
T ss_dssp             HHHHHHHHHH----SCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCSCEEEEEEEECCGGGTTSSSCCCEEEEE
T ss_pred             HHHHHHHHHc----CCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcCCCCEEEEEEEcccchhhhhcCCCcEEEEE
Confidence            9999999998    422111  11111     257899999976554322         1111     124556789998


Q ss_pred             cccchHHHHHHcCCCCCccCC
Q 046865          349 RDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       349 ~~~~~~~~~~ilG~~~~~~~~  369 (369)
                        ++++++++|||+|++|.+|
T Consensus       392 --v~~~~~~~ilG~~~~g~~a  410 (463)
T 2r9z_A          392 --VCAGPEQRVVGVHVIGDGA  410 (463)
T ss_dssp             --EEETTTTEEEEEEEESTTG
T ss_pred             --EEECCCCEEEEEEEECCCH
Confidence              9999999999999999764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=6.1e-48  Score=369.59  Aligned_cols=345  Identities=17%  Similarity=0.197  Sum_probs=255.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------ccc--c-----CCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RAM--V-----EPSFGER   65 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~~--~-----~~~~~~~   65 (369)
                      .++||+|||||++|+++|.+|+ .|.+|+|||+++.++..+...                  ...  .     .......
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDID   84 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            3689999999999999999986 599999999977665322100                  000  0     0000000


Q ss_pred             ceecc------------cccc--ccceEEEeeeeeeecceEEe--cCC------------eEEeccEEEEccCCCCCCCC
Q 046865           66 SVINH------------TDYL--VNGRIVASPAINITENEVLT--AEG------------RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        66 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~--~~g------------~~~~~d~lviAtG~~~~~p~  117 (369)
                      .....            ..++  .+++++.+.+..++.+.+.+  .++            .++.||+||+|||+.|..|+
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~~  164 (482)
T 1ojt_A           85 MLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLP  164 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCCC
Confidence            00000            0111  25788888877777665443  345            67999999999999987665


Q ss_pred             -ChHH-HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcE
Q 046865          118 -TRTE-RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD  195 (369)
Q Consensus       118 -~~~~-~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~  195 (369)
                       ++.. .+.+..+.......+++++|||+|++|+|+|..|.+.  +.+|+++++.+++++.+++++.+.+.+.|++.||+
T Consensus       165 ~i~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~--G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~  242 (482)
T 1ojt_A          165 FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDN  242 (482)
T ss_dssp             SCCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEE
T ss_pred             CCCccCcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHc--CCeEEEEEECCccccccCHHHHHHHHHHHHhcCCE
Confidence             3211 1222222222223589999999999999999999854  89999999999999999999999999999999999


Q ss_pred             EEeCceeeeccCCCCCeEEEcCC----CcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEE
Q 046865          196 VKLGQRVNLDSVSEGSDTYLTST----GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFA  271 (369)
Q Consensus       196 i~~~~~v~~i~~~~~~~~v~~~~----g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a  271 (369)
                      +++++.|.+++.+++.+.+++.+    |+++++|.||+|+|++||++++....++++++++|+|.||++||| +.|+|||
T Consensus       243 i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA  321 (482)
T 1ojt_A          243 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYA  321 (482)
T ss_dssp             EECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEE
T ss_pred             EEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCccc-CCCCEEE
Confidence            99999999987655556677666    778999999999999999988644445557788899999999998 7999999


Q ss_pred             ecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCcccccccc-------CCCcEEEEeecCCCc--------eEEcCcc
Q 046865          272 IGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYW-------PHSAIAIVSLGRKDA--------VAQLPFM  336 (369)
Q Consensus       272 ~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-------~~~~~~~v~lg~~~~--------~~~~~~~  336 (369)
                      +|||++.+  ++++.|.+||+++|+||.    |.+..  +.|.       .+|+++.+|+++.++        +..+++.
T Consensus       322 ~GD~~~~~--~l~~~A~~~g~~aa~~i~----g~~~~--~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~  393 (482)
T 1ojt_A          322 IGDIVGQP--MLAHKAVHEGHVAAENCA----GHKAY--FDARVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWA  393 (482)
T ss_dssp             CGGGTCSS--CCHHHHHHHHHHHHHHHT----TCCCC--CCCCCCCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGG
T ss_pred             EEcccCCC--ccHHHHHHHHHHHHHHHc----CCCcc--CCCCCCCEEEEcCCCeEEEeCCHHHHHhcCCCEEEEEEEcC
Confidence            99999864  468899999999999997    33211  1121       268999999976544        2233221


Q ss_pred             -----cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          337 -----TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       337 -----~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                           ...+...+++|+  ++++++++|||+|++|.+|
T Consensus       394 ~~~~~~~~~~~~~~~k~--~~~~~~~~ilG~~~~g~~a  429 (482)
T 1ojt_A          394 ASGRAIANGCDKPFTKL--IFDAETGRIIGGGIVGPNG  429 (482)
T ss_dssp             GCHHHHHTTCCSCEEEE--EEETTTCBEEEEEEESTTH
T ss_pred             cchHHhhcCCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence                 134566789998  9999999999999999874

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=1.5e-47  Score=366.61  Aligned_cols=347  Identities=17%  Similarity=0.208  Sum_probs=256.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC------cccccccc------------------cc-ccC------
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY------FEITWASL------------------RA-MVE------   59 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~------~~~~~~~~------------------~~-~~~------   59 (369)
                      +++||+|||||++|++||++|+ .|++|+|||+++.      ++..+...                  .. +..      
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            4699999999999999999987 5999999999862      33211100                  00 000      


Q ss_pred             -Ccccccceeccc------------ccc--ccceEEEeeeeeeecce--EEecCC--eEEeccEEEEccCCCCCCCCC--
Q 046865           60 -PSFGERSVINHT------------DYL--VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPKT--  118 (369)
Q Consensus        60 -~~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~--v~~~~g--~~~~~d~lviAtG~~~~~p~~--  118 (369)
                       ............            .++  .+++++.+.+..++.+.  +...++  +.+.||++|+|||+.|..|+.  
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~  161 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAP  161 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCC
Confidence             000000000000            011  25788888888888764  444556  579999999999999775432  


Q ss_pred             -hHHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEE
Q 046865          119 -RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVK  197 (369)
Q Consensus       119 -~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~  197 (369)
                       ....+.+..........+++++|+|+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||+++
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~  239 (476)
T 3lad_A          162 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKIL  239 (476)
T ss_dssp             CCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred             CCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEE
Confidence             111111222222223568999999999999999999985  48999999999999999999999999999999999999


Q ss_pred             eCceeeeccCCCCCeEEEcCCC---cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecc
Q 046865          198 LGQRVNLDSVSEGSDTYLTSTG---DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGD  274 (369)
Q Consensus       198 ~~~~v~~i~~~~~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD  274 (369)
                      ++++|.+++.+++.+.+.+.++   +++++|.||+|+|++|+++++....+++.++++|+|.||+++|| +.|||||+||
T Consensus       240 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD  318 (476)
T 3lad_A          240 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCAT-SVPGVYAIGD  318 (476)
T ss_dssp             ETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBC-SSTTEEECGG
T ss_pred             ECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCccc-CCCCEEEEEc
Confidence            9999999987666666766654   57999999999999999987655556668888999999999998 7999999999


Q ss_pred             cCCccccchhHHHHHHHHHHHHHHHHHhhCCCccccccc-----cCCCcEEEEeecCCCce--------EEcCccc----
Q 046865          275 ITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY-----WPHSAIAIVSLGRKDAV--------AQLPFMT----  337 (369)
Q Consensus       275 ~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~-----~~~~~~~~v~lg~~~~~--------~~~~~~~----  337 (369)
                      |++.+.  +++.|..||+++|+||+.    ......+..     ..+|+++.+|+++.++.        ..+++..    
T Consensus       319 ~~~~~~--~~~~A~~~g~~aa~~i~g----~~~~~~~~~~p~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~  392 (476)
T 3lad_A          319 VVRGAM--LAHKASEEGVVVAERIAG----HKAQMNYDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRA  392 (476)
T ss_dssp             GSSSCC--CHHHHHHHHHHHHHHHHH----CCCCCCTTCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHH
T ss_pred             cCCCcc--cHHHHHHHHHHHHHHhcC----CCcccCCCCCCEEEECcCCEEEeeCCHHHHHhcCCCEEEEEEeccccchh
Confidence            996554  789999999999999983    221111111     13689999999876552        2333221    


Q ss_pred             -ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          338 -TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       338 -~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                       ..+...+++|+  ++++++++|||+|++|.||
T Consensus       393 ~~~~~~~~~~k~--~~~~~~~~ilG~~~~g~~a  423 (476)
T 3lad_A          393 MAANDTAGFVKV--IADAKTDRVLGVHVIGPSA  423 (476)
T ss_dssp             HHHTCCCCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             eecCCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence             34567899999  9999999999999999874

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=3.5e-47  Score=364.26  Aligned_cols=349  Identities=19%  Similarity=0.208  Sum_probs=255.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------ccccC-------Ccccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RAMVE-------PSFGE   64 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~~~~-------~~~~~   64 (369)
                      ..++||+|||||++|++||+.|+ .|++|+|||++. +|..+...                  .....       ..+..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW   96 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            34689999999999999999987 599999999874 43221110                  00000       00000


Q ss_pred             cceecc------------ccc--cccceEEEeeeeeeecc--eEEecCCeEEeccEEEEccCCCCCCC---CChHHH-HH
Q 046865           65 RSVINH------------TDY--LVNGRIVASPAINITEN--EVLTAEGRRVVYDYLVIATGHKDPVP---KTRTER-LN  124 (369)
Q Consensus        65 ~~~~~~------------~~~--~~~~~~~~~~~~~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~p---~~~~~~-~~  124 (369)
                      .....+            ...  ..+++++.+.+..++..  .+. .+++++.||+||+|||+.|..|   +++... ..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~~~~  175 (478)
T 3dk9_A           97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGASLGI  175 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGGGSB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCceeE
Confidence            000000            000  12578888888888764  444 4678899999999999998777   544321 11


Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      +..........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.|++.||++++++.+.+
T Consensus       176 ~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~  253 (478)
T 3dk9_A          176 TSDGFFQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKE  253 (478)
T ss_dssp             CHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred             chHHhhchhhcCccEEEECCCHHHHHHHHHHHH--cCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            122222223457999999999999999999985  489999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC--eEEEcCC---C----cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEeccc
Q 046865          205 DSVSEGS--DTYLTST---G----DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDI  275 (369)
Q Consensus       205 i~~~~~~--~~v~~~~---g----~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~  275 (369)
                      ++.+++.  +.+.+.+   |    +++++|.||+|+|++|+++++....++++++++|+|.||+++|| +.|||||+|||
T Consensus       254 i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~  332 (478)
T 3dk9_A          254 VKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDV  332 (478)
T ss_dssp             EEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC-SSTTEEECGGG
T ss_pred             EEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc-CCCCEEEEEec
Confidence            8765444  5566654   2    57999999999999999987655555667889999999999998 79999999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHHHHhhCCC-c---cccccccCCCcEEEEeecCCCceEE----------cCcc-----
Q 046865          276 TDIREIKQGFLAQKHAQVAAKNLKVLMVGER-E---SKMATYWPHSAIAIVSLGRKDAVAQ----------LPFM-----  336 (369)
Q Consensus       276 ~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~-~---~~~~~~~~~~~~~~v~lg~~~~~~~----------~~~~-----  336 (369)
                      ++.+  ++++.|..||+++|+||+....... .   .+...| ..|+++.+|+++.++...          .++.     
T Consensus       333 ~~~~--~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~-~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~  409 (478)
T 3dk9_A          333 CGKA--LLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVF-SHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHA  409 (478)
T ss_dssp             GCSS--CCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEEC-CSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGG
T ss_pred             CCCC--ccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEE-CCCceEEeeCCHHHHHhhCCCccEEEEEeecCcchhh
Confidence            9654  4689999999999999983210000 0   001111 258999999987765322          1111     


Q ss_pred             cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          337 TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       337 ~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ...+...+++|+  ++++++++|||+|++|.||
T Consensus       410 ~~~~~~~g~~k~--i~~~~~~~ilG~~~~g~~a  440 (478)
T 3dk9_A          410 VTKRKTKCVMKM--VCANKEEKVVGIHMQGLGC  440 (478)
T ss_dssp             GCSSCCCEEEEE--EEETTTTEEEEEEEESTTH
T ss_pred             hhcCCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence            124667899998  9999999999999999764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-47  Score=362.07  Aligned_cols=347  Identities=16%  Similarity=0.182  Sum_probs=253.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------ccc----cC---------
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RAM----VE---------   59 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~~----~~---------   59 (369)
                      .++||+|||||++|++||+.|+ .|.+|+|||+++ ++..|...                  ...    ..         
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   88 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH   88 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence            4689999999999999999986 599999999985 44332110                  000    00         


Q ss_pred             Ccccccceec------------ccccc--ccceEEEeeeeeeecce--EEecCCe--EEeccEEEEccCCCCCCC-CChH
Q 046865           60 PSFGERSVIN------------HTDYL--VNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVP-KTRT  120 (369)
Q Consensus        60 ~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~--v~~~~g~--~~~~d~lviAtG~~~~~p-~~~~  120 (369)
                      ..+....+..            +...+  .+++++.+.+..++++.  +.+.+++  ++.||+||+|||+.|..| +++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~g  168 (479)
T 2hqm_A           89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPG  168 (479)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTSTT
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCC
Confidence            0000000000            00111  25788888888887764  4445665  799999999999998777 5542


Q ss_pred             HH-HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeC
Q 046865          121 ER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       121 ~~-~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      .. ..+..........+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||+++++
T Consensus       169 ~~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~  246 (479)
T 2hqm_A          169 FELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHG--LGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKL  246 (479)
T ss_dssp             GGGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECS
T ss_pred             cccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeC
Confidence            21 11122222333468999999999999999999985  4899999999999999999999999999999999999999


Q ss_pred             ceeeeccCCCCC--eEEEcCCC-cEEeccEEEEcCCCCCCchh-hcccccCCCCCCCCcEEeCCceeeccCCCeEEeccc
Q 046865          200 QRVNLDSVSEGS--DTYLTSTG-DTIKADCHFLCTGKPVGSDW-LKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDI  275 (369)
Q Consensus       200 ~~v~~i~~~~~~--~~v~~~~g-~~i~~d~vi~a~G~~p~~~~-l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~  275 (369)
                      ++|.+++.+++.  +.+++.+| +++++|.||+|+|++||+.+ +..  ++++++++|+|.||++||| +.|+|||+|||
T Consensus       247 ~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~--~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~  323 (479)
T 2hqm_A          247 SKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSEN--VGIKLNSHDQIIADEYQNT-NVPNIYSLGDV  323 (479)
T ss_dssp             CCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGG--GTCCBCTTSCBCCCTTCBC-SSTTEEECGGG
T ss_pred             CEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhh--cCceECCCCCEeECCCCcc-CCCCEEEEEec
Confidence            999998765433  67888888 78999999999999999944 343  4457788899999999998 79999999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHHHHh---hCCCc---cccccccCCCcEEEEeecCCCceEEc----------Ccc---
Q 046865          276 TDIREIKQGFLAQKHAQVAAKNLKVLM---VGERE---SKMATYWPHSAIAIVSLGRKDAVAQL----------PFM---  336 (369)
Q Consensus       276 ~~~~~~~~~~~A~~~g~~~a~~i~~~~---~g~~~---~~~~~~~~~~~~~~v~lg~~~~~~~~----------~~~---  336 (369)
                      ++.+  .+++.|.+||+++|+||+...   .....   .+...| ..|+++.+|+++.++..++          ++.   
T Consensus       324 ~~~~--~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~-~~~~~~~vGl~e~~a~~~~~~~~~~~~~~~~~~~~  400 (479)
T 2hqm_A          324 VGKV--ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIF-SHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMY  400 (479)
T ss_dssp             TTSS--CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEEC-CSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGG
T ss_pred             CCCc--ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEE-CCCCeEEEeCCHHHHHhcCCCCcEEEEEEeccHHH
Confidence            8764  368899999999999998321   00000   001112 2588999999876653221          111   


Q ss_pred             --cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          337 --TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       337 --~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                        ...+...+++|+  ++++++++|||+|++|.+|
T Consensus       401 ~~~~~~~~~~~~kl--i~~~~~~~ilG~~~~g~~a  433 (479)
T 2hqm_A          401 YAMLSEKSPTRYKI--VCAGPNEKVVGLHIVGDSS  433 (479)
T ss_dssp             GGGCSSCCCEEEEE--EEETTTTEEEEEEEESTTH
T ss_pred             HHhhcCCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence              124556789998  9999999999999999764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=2.7e-47  Score=363.28  Aligned_cols=344  Identities=18%  Similarity=0.199  Sum_probs=255.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc------------------cc----cC--Ccccccce
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR------------------AM----VE--PSFGERSV   67 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~------------------~~----~~--~~~~~~~~   67 (369)
                      ++||+|||||+||++||..|+ .|.+|+|||+++ +|..|....                  ..    +.  .......+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   84 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKL   84 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHH
Confidence            589999999999999999986 599999999987 443221000                  00    00  00010101


Q ss_pred             ec------------ccccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCC-ChHH-HHHHHHHHHH
Q 046865           68 IN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK-TRTE-RLNQYQAENQ  131 (369)
Q Consensus        68 ~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~-~~~~-~~~~~~~~~~  131 (369)
                      ..            ...++  .+++++.+++..++.+++.+. ++++.||+||+|||++|..|+ ++.. .+.+..+...
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~~~v~~~~~~~~  163 (464)
T 2eq6_A           85 GGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG-GERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALK  163 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TEEEEEEEEEECCCEEECCBTTBCCSSSEECHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCCCcEEcHHHHHh
Confidence            00            01111  267888888888888887776 778999999999999987764 4321 1222222222


Q ss_pred             HHh-cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC
Q 046865          132 KIK-SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG  210 (369)
Q Consensus       132 ~~~-~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  210 (369)
                      ... .+++++|||+|++|+|+|..|++  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+++
T Consensus       164 l~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  241 (464)
T 2eq6_A          164 VEEGLPKRLLVIGGGAVGLELGQVYRR--LGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKD  241 (464)
T ss_dssp             GGGCCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT
T ss_pred             hhhhcCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCC
Confidence            223 57999999999999999999985  489999999999999999999999999999999999999999999876555


Q ss_pred             CeEEEcC-C--Cc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhH
Q 046865          211 SDTYLTS-T--GD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGF  285 (369)
Q Consensus       211 ~~~v~~~-~--g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~  285 (369)
                      .+.+++. +  |+  ++++|.||+|+|++|+++++....+++.++++|+|.||+++|| +.|+|||+|||++.+.  +++
T Consensus       242 ~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~--l~~  318 (464)
T 2eq6_A          242 GLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMET-SVPGVYAIGDAARPPL--LAH  318 (464)
T ss_dssp             EEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGTCSSC--CHH
T ss_pred             EEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCccc-CCCCEEEEeccCCCcc--cHH
Confidence            5666665 6  76  8999999999999999987533334456778899999999998 7999999999997643  688


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCccccc--cc--cCCCcEEEEeecCCCc--------eEEcCcc-----cccccccceecc
Q 046865          286 LAQKHAQVAAKNLKVLMVGERESKMA--TY--WPHSAIAIVSLGRKDA--------VAQLPFM-----TTIGCVPGLIKS  348 (369)
Q Consensus       286 ~A~~~g~~~a~~i~~~~~g~~~~~~~--~~--~~~~~~~~v~lg~~~~--------~~~~~~~-----~~~g~~~~~~k~  348 (369)
                      .|..||+++|+||.    |.+....+  ++  ..+|+++.+|+++.++        +..+++.     ...+...+++|+
T Consensus       319 ~A~~~g~~aa~~i~----g~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~  394 (464)
T 2eq6_A          319 KAMREGLIAAENAA----GKDSAFDYQVPSVVYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKV  394 (464)
T ss_dssp             HHHHHHHHHHHHHT----TCCCCCCCCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTSCCCCEEEE
T ss_pred             HHHHHHHHHHHHhc----CCCcccCCCCCeEEECCCCEEEEeCCHHHHHhcCCCEEEEEEEcCcchhhhhcCCCcEEEEE
Confidence            99999999999997    33211111  11  1358899999876543        2223221     134566789998


Q ss_pred             cccchHHHHHHcCCCCCccCC
Q 046865          349 RDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       349 ~~~~~~~~~~ilG~~~~~~~~  369 (369)
                        ++++++++|||+|++|.+|
T Consensus       395 --~~~~~~~~ilG~~~~g~~a  413 (464)
T 2eq6_A          395 --VGDEETDLLLGVFIVGPQA  413 (464)
T ss_dssp             --EEETTTCBEEEEEEEETTH
T ss_pred             --EEECCCCEEEEEEEECCCH
Confidence              9998999999999999764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=2.6e-47  Score=364.20  Aligned_cols=344  Identities=16%  Similarity=0.213  Sum_probs=254.1

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc--------c-----------c----cC----Ccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR--------A-----------M----VE----PSFGE   64 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~--------~-----------~----~~----~~~~~   64 (369)
                      ++||+|||||+||++||.+|+ .|++|+|||+++.+|..+....        .           .    +.    .....
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS   81 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            589999999999999999987 5999999999977664321100        0           0    00    00000


Q ss_pred             cceecc------------cccc--ccceEEEeeeeeeecce--EEecCC--eEEeccEEEEccCCCCCCCCCh---HHHH
Q 046865           65 RSVINH------------TDYL--VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPKTR---TERL  123 (369)
Q Consensus        65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~--v~~~~g--~~~~~d~lviAtG~~~~~p~~~---~~~~  123 (369)
                      ..+..+            ..++  .+++++.+++..++.+.  +.+.+|  +++.||+||+|||+.|..|+++   ...+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~~v  161 (468)
T 2qae_A           82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV  161 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcCce
Confidence            000000            1111  25788888888887764  444566  7899999999999987766432   1112


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHH-HhCCcEEEeCcee
Q 046865          124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWL-ISKKVDVKLGQRV  202 (369)
Q Consensus       124 ~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v  202 (369)
                      .+..+.......+++++|+|+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+ +++||+++++++|
T Consensus       162 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v  239 (468)
T 2qae_A          162 LSSTGALALPRVPKTMVVIGGGVIGLELGSVWAR--LGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKV  239 (468)
T ss_dssp             ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEE
T ss_pred             echHHHhhcccCCceEEEECCCHHHHHHHHHHHH--hCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence            2223332223467999999999999999999985  489999999999999999999999999999 9999999999999


Q ss_pred             eeccCCCCCeEEEcC--CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCC-
Q 046865          203 NLDSVSEGSDTYLTS--TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITD-  277 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~--~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~-  277 (369)
                      .+++.+++.+.+.+.  +|  +++++|.||+|+|++|+++++....+++.++++|+|.||++||| +.|+|||+|||++ 
T Consensus       240 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~  318 (468)
T 2qae_A          240 VGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFET-SIPDVYAIGDVVDK  318 (468)
T ss_dssp             EEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGBSS
T ss_pred             EEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCccc-CCCCEEEeeccCCC
Confidence            998766555666654  66  57999999999999999988543344456788899999999998 7999999999998 


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhCCCcccccccc-------CCCcEEEEeecCCCce--------EEcCcc-----c
Q 046865          278 IREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYW-------PHSAIAIVSLGRKDAV--------AQLPFM-----T  337 (369)
Q Consensus       278 ~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-------~~~~~~~v~lg~~~~~--------~~~~~~-----~  337 (369)
                      .+  ++++.|.+||+++|.||.    +.+..  +.|.       .+|+++.+|+++.++.        ..+++.     .
T Consensus       319 ~~--~~~~~A~~~g~~aa~~i~----~~~~~--~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~  390 (468)
T 2qae_A          319 GP--MLAHKAEDEGVACAEILA----GKPGH--VNYGVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFNANSRAK  390 (468)
T ss_dssp             SC--SCHHHHHHHHHHHHHHHT----TCCCC--CCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHH
T ss_pred             CC--ccHhHHHHHHHHHHHHHc----CCCcc--CCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEecccchhhh
Confidence            43  468899999999999997    33211  1221       3588999998765542        222221     1


Q ss_pred             ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          338 TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       338 ~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..+...+++|+  ++++++++|||+|++|.+|
T Consensus       391 ~~~~~~~~~kl--~~~~~~~~ilG~~~~g~~a  420 (468)
T 2qae_A          391 AVSTEDGFVKV--LVDKATDRILGVHIVCTTA  420 (468)
T ss_dssp             HTTCCCCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             hcCCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence            34567789998  9998999999999999874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=7.3e-47  Score=365.18  Aligned_cols=345  Identities=21%  Similarity=0.285  Sum_probs=258.9

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc---c--cc-----------------CCcccc---
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR---A--MV-----------------EPSFGE---   64 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~---~--~~-----------------~~~~~~---   64 (369)
                      ..++||||||||++|++||++|+ .|++|+|||+++.+|..+....   .  +.                 -+....   
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~  120 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV  120 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhh
Confidence            45689999999999999999997 5999999999986553321100   0  00                 000000   


Q ss_pred             --cceec-----cc---ccc-------ccceEE-EeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHH---HH
Q 046865           65 --RSVIN-----HT---DYL-------VNGRIV-ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE---RL  123 (369)
Q Consensus        65 --~~~~~-----~~---~~~-------~~~~~~-~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~---~~  123 (369)
                        .....     ..   .++       .+++++ .+.+..++.+++.+. +..+.||+||+|||+.|..|+++..   .+
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~-g~~~~~d~lViATGs~p~~p~i~G~~~~~v  199 (523)
T 1mo9_A          121 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA-GKVFKAKNLILAVGAGPGTLDVPGVNAKGV  199 (523)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET-TEEEEBSCEEECCCEECCCCCSTTTTSBTE
T ss_pred             hHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC-CEEEEeCEEEECCCCCCCCCCCCCcccCcE
Confidence              00000     11   122       257787 888888888877775 7789999999999999887765321   12


Q ss_pred             HHHHHHH-HHHhcC-CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCce
Q 046865          124 NQYQAEN-QKIKSA-RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       124 ~~~~~~~-~~~~~~-~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      .+..+.. .....+ ++++|+|+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||+++++++
T Consensus       200 ~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~  277 (523)
T 1mo9_A          200 FDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSN  277 (523)
T ss_dssp             EEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCE
T ss_pred             eeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCE
Confidence            2222333 222346 999999999999999999985  489999999999999999999999999999999999999999


Q ss_pred             eeeccCCCCC----eEEEcCCCc-EEeccEEEEcCCCCCCch-hhcccccCCCCCCCCcEEeCCceeeccCCCeEEeccc
Q 046865          202 VNLDSVSEGS----DTYLTSTGD-TIKADCHFLCTGKPVGSD-WLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDI  275 (369)
Q Consensus       202 v~~i~~~~~~----~~v~~~~g~-~i~~d~vi~a~G~~p~~~-~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~  275 (369)
                      |.+++.+++.    +.+++.+|+ ++++|.||+|+|++|+++ ++...++  +++++|+|.||++||| +.|+|||+|||
T Consensus       278 V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~  354 (523)
T 1mo9_A          278 VTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGL--DLGPKGEVLVNEYLQT-SVPNVYAVGDL  354 (523)
T ss_dssp             EEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTC--CBCTTSCBCCCTTSBC-SSTTEEECGGG
T ss_pred             EEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCC--ccCCCCCEEECCCCcc-CCCCEEEEeec
Confidence            9998764444    667888887 899999999999999998 6665544  6778899999999998 79999999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHHHHhhCCCcc---c--cccccCCCcEEEEeecCCCc--------eEEcCccc-----
Q 046865          276 TDIREIKQGFLAQKHAQVAAKNLKVLMVGERES---K--MATYWPHSAIAIVSLGRKDA--------VAQLPFMT-----  337 (369)
Q Consensus       276 ~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~---~--~~~~~~~~~~~~v~lg~~~~--------~~~~~~~~-----  337 (369)
                      ++.+  ++++.|.+||+++|.||.    |.+..   .  +..+..+|+++.+|+++.++        +..+++..     
T Consensus       355 ~~~~--~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~  428 (523)
T 1mo9_A          355 IGGP--MEMFKARKSGCYAARNVM----GEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLN  428 (523)
T ss_dssp             GCSS--CSHHHHHHHHHHHHHHHT----TCCCCCCCCSCCEEEESSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTC
T ss_pred             CCCc--ccHHHHHHHHHHHHHHHc----CCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhCCCCEEEEEEecccccccc
Confidence            9865  368899999999999997    32211   0  11112368899999876544        22223321     


Q ss_pred             --------------cc--ccccceecccccchHHHHHHcCCCCCccCC
Q 046865          338 --------------TI--GCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       338 --------------~~--g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                                    ..  +...+++|+  ++++++++|||+|++|.+|
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~~~~ilG~~~~g~~a  474 (523)
T 1mo9_A          429 VALPASDRTMLYAFGKGTAHMSGFQKI--VIDAKTRKVLGAHHVGYGA  474 (523)
T ss_dssp             SSCSCCTTTHHHHHSTTTGGGGCEEEE--EEETTTCBEEEEEEEESSC
T ss_pred             cccccccccccceEEeecCCCCEEEEE--EEECCCCEEEEEEEECCCH
Confidence                          12  566789998  9999999999999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=2.5e-47  Score=365.52  Aligned_cols=346  Identities=22%  Similarity=0.224  Sum_probs=260.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------c---cc-cC---Cccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------R---AM-VE---PSFGER   65 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~---~~-~~---~~~~~~   65 (369)
                      .++||+|||||++|++||+.|+ .|++|+|||++ .+|..+...                  .   .+ +.   +.+...
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~  103 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY-RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWE  103 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC-CCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            3689999999999999999997 59999999994 444322110                  0   00 00   000000


Q ss_pred             cee--------c----cccc--cccceEEEeeeeeeecceEEec-CCeEEeccEEEEccCCCCC-CCCChHHH-HHHHHH
Q 046865           66 SVI--------N----HTDY--LVNGRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDP-VPKTRTER-LNQYQA  128 (369)
Q Consensus        66 ~~~--------~----~~~~--~~~~~~~~~~~~~~~~~~v~~~-~g~~~~~d~lviAtG~~~~-~p~~~~~~-~~~~~~  128 (369)
                      ...        .    +..+  ..+++++.+.+..++...+.+. ++..+.||++++|||+.|. .|.++... +.+...
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~  183 (484)
T 3o0h_A          104 KLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNE  183 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGGSBCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccccccHHH
Confidence            000        0    0001  1257888999999998888876 7789999999999999887 77654321 111111


Q ss_pred             HHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC
Q 046865          129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS  208 (369)
Q Consensus       129 ~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  208 (369)
                      .......+++++|+|+|++|+|+|..+.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+
T Consensus       184 ~~~~~~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~  261 (484)
T 3o0h_A          184 IFDLEKLPKSIVIVGGGYIGVEFANIFHG--LGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQST  261 (484)
T ss_dssp             GGGCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEEC
T ss_pred             HHhHHhcCCcEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEee
Confidence            12222458999999999999999999985  4899999999999999999999999999999999999999999999877


Q ss_pred             CCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHH
Q 046865          209 EGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQ  288 (369)
Q Consensus       209 ~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~  288 (369)
                      ++.+.+++.+|+++++|.||+|+|++|+++++.....++.++++|+|.||+++|| +.|+|||+|||++.+  ++++.|.
T Consensus       262 ~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~--~~~~~A~  338 (484)
T 3o0h_A          262 ENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTT-NVSHIWAVGDVTGHI--QLTPVAI  338 (484)
T ss_dssp             SSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGTSC--CCHHHHH
T ss_pred             CCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCC-CCCCEEEEEecCCCC--cCHHHHH
Confidence            6677888899989999999999999999988654455567889999999999997 799999999999754  4789999


Q ss_pred             HHHHHHHHHHHHHhhCCCccc-ccccc-----CCCcEEEEeecCCCceE--------EcCccc-----ccccccceeccc
Q 046865          289 KHAQVAAKNLKVLMVGERESK-MATYW-----PHSAIAIVSLGRKDAVA--------QLPFMT-----TIGCVPGLIKSR  349 (369)
Q Consensus       289 ~~g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~~~v~lg~~~~~~--------~~~~~~-----~~g~~~~~~k~~  349 (369)
                      .||+++|+||+    +..... .+...     ..|+++.+|+++.++..        .+++..     ..+...+++|+ 
T Consensus       339 ~~g~~aa~~i~----~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~-  413 (484)
T 3o0h_A          339 HDAMCFVKNAF----ENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKL-  413 (484)
T ss_dssp             HHHHHHHHHHH----C---CCCCCTTCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEEEEE-
T ss_pred             HHHHHHHHHHc----CCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEEEEE-
Confidence            99999999998    322111 11111     25899999998776532        222221     34667899999 


Q ss_pred             ccchHHHHHHcCCCCCccCC
Q 046865          350 DLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       350 ~~~~~~~~~ilG~~~~~~~~  369 (369)
                       ++++++++|||+|++|.+|
T Consensus       414 -~~~~~~~~ilG~~~~g~~a  432 (484)
T 3o0h_A          414 -VVDGESRIVVGAHVLGENA  432 (484)
T ss_dssp             -EEETTTCBEEEEEEESTTH
T ss_pred             -EEECCCCEEEEEEEECcCH
Confidence             9999999999999999764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.7e-47  Score=364.17  Aligned_cols=345  Identities=21%  Similarity=0.218  Sum_probs=243.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------c----------ccc----cC--Ccccccce
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------L----------RAM----VE--PSFGERSV   67 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~----------~~~----~~--~~~~~~~~   67 (369)
                      ++||+|||||+||++||.+|+ .|.+|+|||+++ +|..|..        +          ...    +.  ..+....+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL   80 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHH
Confidence            589999999999999999986 599999999986 4332211        0          000    00  00010000


Q ss_pred             ec------------ccccc--ccceEEEeeeeeeecceEEecC-------------CeEEeccEEEEccCCCCCCCCChH
Q 046865           68 IN------------HTDYL--VNGRIVASPAINITENEVLTAE-------------GRRVVYDYLVIATGHKDPVPKTRT  120 (369)
Q Consensus        68 ~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~-------------g~~~~~d~lviAtG~~~~~p~~~~  120 (369)
                      ..            +..++  .+++++.+++..++.+.+.+.+             +.++.||+||+|||+.|..|+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i~G  160 (500)
T 1onf_A           81 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKG  160 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCCCC
Confidence            00            00111  2578888888777776665543             567999999999999988776543


Q ss_pred             H-HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeC
Q 046865          121 E-RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       121 ~-~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      . ...+..+.... ..+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.|+++||+++++
T Consensus       161 ~~~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~  237 (500)
T 1onf_A          161 IENTISSDEFFNI-KESKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTF  237 (500)
T ss_dssp             GGGCEEHHHHTTC-CCCSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECS
T ss_pred             CCcccCHHHHhcc-CCCCeEEEECChHHHHHHHHHHHH--cCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEEC
Confidence            2 11112222111 227999999999999999999984  4899999999999999999999999999999999999999


Q ss_pred             ceeeeccCCC-CCeEEEcCCCcE-EeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCC
Q 046865          200 QRVNLDSVSE-GSDTYLTSTGDT-IKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITD  277 (369)
Q Consensus       200 ~~v~~i~~~~-~~~~v~~~~g~~-i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~  277 (369)
                      +.|.+++.++ +.+.+++.+|++ +++|.||+|+|++|++++|....+++++ ++|+|.||+++|| +.|+|||+|||+.
T Consensus       238 ~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t-~~~~iya~GD~~~  315 (500)
T 1onf_A          238 ADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRT-SVNNIYAVGDCCM  315 (500)
T ss_dssp             CCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBC-SSSSEEECSTTEE
T ss_pred             CEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCccc-CCCCEEEEecccc
Confidence            9999987644 346788888987 9999999999999999765333344566 6899999999997 7999999999992


Q ss_pred             c--------------------------------cccchhHHHHHHHHHHHHHHHHHhhCCCccc-ccccc-----CCCcE
Q 046865          278 I--------------------------------REIKQGFLAQKHAQVAAKNLKVLMVGERESK-MATYW-----PHSAI  319 (369)
Q Consensus       278 ~--------------------------------~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~  319 (369)
                      .                                ..+++++.|.+||+++|+||.    +....+ .+...     .+|++
T Consensus       316 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~~~~  391 (500)
T 1onf_A          316 VKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLF----LKKTRKTNYKLIPTVIFSHPPI  391 (500)
T ss_dssp             EC------------------------------CBCCCCHHHHHHHHHHHHHHHH----SCTTCCCCCSSCCEEECCSSCE
T ss_pred             ccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHh----CCCCccCCCCCCCeEEEcCcce
Confidence            1                                234578999999999999998    322111 11111     25889


Q ss_pred             EEEeecCCCceEEc----------Cc--c---c----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          320 AIVSLGRKDAVAQL----------PF--M---T----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       320 ~~v~lg~~~~~~~~----------~~--~---~----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +.+|+++.++...+          ++  .   .    ..+...+++|+  ++++++++|||+|++|.||
T Consensus       392 a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~ilG~~~~g~~a  458 (500)
T 1onf_A          392 GTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKL--VCVGKDELIKGLHIIGLNA  458 (500)
T ss_dssp             EEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEE--EEETTTTEEEEEEEESTTH
T ss_pred             EEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEE--EEECCCCEEEEEEEECCCH
Confidence            99999866553221          11  0   0    12356789998  9999999999999999764

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=4e-46  Score=354.16  Aligned_cols=344  Identities=21%  Similarity=0.278  Sum_probs=249.4

Q ss_pred             cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccccc-ceecccccc---ccceEEEe-ee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGER-SVINHTDYL---VNGRIVAS-PA   84 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~-~~   84 (369)
                      ++||||||||++|+++|+.|++   +.+|+|||+++++++.+..+........... ......+++   .+++++.+ ++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            4799999999999999999863   7899999999977654433322221111111 111111111   25677766 67


Q ss_pred             eeeecc--eEEecCC-eEEeccEEEEccCCCCCCCCChHH---------HHHHHHHHHHHHh--cCCeEEEEcCChhHHH
Q 046865           85 INITEN--EVLTAEG-RRVVYDYLVIATGHKDPVPKTRTE---------RLNQYQAENQKIK--SARSILIVGGGPTGVE  150 (369)
Q Consensus        85 ~~~~~~--~v~~~~g-~~~~~d~lviAtG~~~~~p~~~~~---------~~~~~~~~~~~~~--~~~~v~vvG~G~~g~e  150 (369)
                      ..++..  .+.+.++ .++.||+||+|||+.|..|+++..         ...+.....+...  .+++++|||+|++|+|
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E  162 (449)
T 3kd9_A           83 IEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIE  162 (449)
T ss_dssp             EEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHH
T ss_pred             EEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHH
Confidence            777654  5666666 489999999999998776654321         1233333333333  6789999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEE
Q 046865          151 LAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFL  229 (369)
Q Consensus       151 ~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~  229 (369)
                      +|..|.+  .+.+|+++++.+++++. +++++.+.+.+.+++. |++++++.+.+++.++ .+...+.+++++++|.||+
T Consensus       163 ~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~  238 (449)
T 3kd9_A          163 MAEAFAA--QGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVIL  238 (449)
T ss_dssp             HHHHHHH--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEE
T ss_pred             HHHHHHh--CCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEE
Confidence            9999985  48999999999999997 9999999999999999 9999999999887554 3333455677899999999


Q ss_pred             cCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHHHHHH
Q 046865          230 CTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       230 a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~i~~~  301 (369)
                      |+|++|+++++...++  +++++|+|.||+++|| +.|+|||+|||+..+.        +++++.|.+||+++|+||+  
T Consensus       239 a~G~~p~~~l~~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~--  313 (449)
T 3kd9_A          239 ATGIKPNIELAKQLGV--RIGETGAIWTNEKMQT-SVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIA--  313 (449)
T ss_dssp             CSCEEECCHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHT--
T ss_pred             eeCCccCHHHHHhCCc--cCCCCCCEEECCCCcc-CCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhc--
Confidence            9999999988765544  6788999999999998 7999999999986321        3578999999999999997  


Q ss_pred             hhCCCcccc----ccc--cCCCcEEEEeecCCCce--------EEcCcc----cccccccceecccccchHHHHHHcCCC
Q 046865          302 MVGERESKM----ATY--WPHSAIAIVSLGRKDAV--------AQLPFM----TTIGCVPGLIKSRDLFVGKTRKQMGLE  363 (369)
Q Consensus       302 ~~g~~~~~~----~~~--~~~~~~~~v~lg~~~~~--------~~~~~~----~~~g~~~~~~k~~~~~~~~~~~ilG~~  363 (369)
                        |.+....    .++  ..+|+++.+|+++.++.        ..+...    ...+...+++|+  ++++++++|||+|
T Consensus       314 --g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~ilG~~  389 (449)
T 3kd9_A          314 --GKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKG--VVDNETNRLLGVQ  389 (449)
T ss_dssp             --TCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEE--EEETTTCBEEEEE
T ss_pred             --CCCccCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEE--EEECCCCEEEEEE
Confidence              4332111    011  13588999999876542        111111    122567789998  9999999999999


Q ss_pred             CCccCC
Q 046865          364 PDVAHA  369 (369)
Q Consensus       364 ~~~~~~  369 (369)
                      ++|.+|
T Consensus       390 ~~g~~a  395 (449)
T 3kd9_A          390 VVGSDI  395 (449)
T ss_dssp             EEESSC
T ss_pred             EEChHH
Confidence            999875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.9e-47  Score=363.39  Aligned_cols=344  Identities=19%  Similarity=0.184  Sum_probs=254.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc------------------c--cCCcccccce----
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA------------------M--VEPSFGERSV----   67 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~------------------~--~~~~~~~~~~----   67 (369)
                      ++||+|||||+||++||..|+ .|.+|+||||++.+|..|.....                  .  ....+.....    
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRK   83 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence            589999999999999999986 59999999988887754322100                  0  0000100000    


Q ss_pred             ---------ecccccc--ccceEEEeeeeeeecc--eEEecCCeE--EeccEEEEccCCCCCCCCChHH-HHHHHHHHH-
Q 046865           68 ---------INHTDYL--VNGRIVASPAINITEN--EVLTAEGRR--VVYDYLVIATGHKDPVPKTRTE-RLNQYQAEN-  130 (369)
Q Consensus        68 ---------~~~~~~~--~~~~~~~~~~~~~~~~--~v~~~~g~~--~~~d~lviAtG~~~~~p~~~~~-~~~~~~~~~-  130 (369)
                               .....++  .+++++.+++..++.+  .+...++++  +.||+||+|||+.|..|+++.. .+.+..... 
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t~~~~~~  163 (466)
T 3l8k_A           84 DYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFG  163 (466)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGGGSBCHHHHHS
T ss_pred             HhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCccceEeHHHHHH
Confidence                     0011111  2678888888888876  455667777  9999999999999776655321 222222222 


Q ss_pred             ---HHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC-CcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          131 ---QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-GPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       131 ---~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                         .....+++++|+|+|++|+|+|..|.+  .+.+|+++++.+++++.+ ++++.+.+++.++   |++++++.|.+++
T Consensus       164 ~~~~l~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~  238 (466)
T 3l8k_A          164 YKTSFRKLPQDMVIIGAGYIGLEIASIFRL--MGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVK  238 (466)
T ss_dssp             TTCSCCSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEE
T ss_pred             HHHHHhhCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEE
Confidence               122357899999999999999999985  489999999999999988 9999999998887   9999999999987


Q ss_pred             CCC-CCeEEEcC--CCc--EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc
Q 046865          207 VSE-GSDTYLTS--TGD--TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI  281 (369)
Q Consensus       207 ~~~-~~~~v~~~--~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~  281 (369)
                      .++ +.+.+.+.  +|+  ++++|.||+|+|++|+++ +....++++++++| |.||+++|| +.|+|||+|||++.+  
T Consensus       239 ~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~~~~t-~~~~Iya~GD~~~~~--  313 (466)
T 3l8k_A          239 KIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDETMKT-NIPNVFATGDANGLA--  313 (466)
T ss_dssp             EEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCTTCBC-SSTTEEECGGGTCSC--
T ss_pred             EcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECCCccC-CCCCEEEEEecCCCC--
Confidence            655 56667776  665  899999999999999998 43344455788899 999999998 799999999999864  


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhCCCccc-----cccccCCCcEEEEeecCCCce--------EEcCccc-----cccccc
Q 046865          282 KQGFLAQKHAQVAAKNLKVLMVGERESK-----MATYWPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVP  343 (369)
Q Consensus       282 ~~~~~A~~~g~~~a~~i~~~~~g~~~~~-----~~~~~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~  343 (369)
                      ++++.|..||+++|+||+.... .....     +......|+++.+|+++.++.        ..+++..     ..+...
T Consensus       314 ~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  392 (466)
T 3l8k_A          314 PYYHAAVRMSIAAANNIMANGM-PVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKE  392 (466)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTTS-CCCCCCSTTSCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGSHHHHHHTCCC
T ss_pred             ccHhHHHHHHHHHHHHHhCCCC-CccccCCCCCcEEEECCCCeEEecCCHHHHHhCCCCEEEEEEEcccChhheecCCCe
Confidence            4789999999999999983200 11111     111113689999999876652        3333221     346678


Q ss_pred             ceecccccchHHHHHHcCCCCCccCC
Q 046865          344 GLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       344 ~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +++|+  ++++++++|||+|++|.+|
T Consensus       393 g~~k~--i~~~~~~~ilG~~~~g~~a  416 (466)
T 3l8k_A          393 GVLKL--IFERGSMRLIGAWMIGVHS  416 (466)
T ss_dssp             CEEEE--EEETTTCBEEEEEEESTTH
T ss_pred             EEEEE--EEECCCCEEEEEEEECCCH
Confidence            99999  9999999999999999874

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=5.8e-47  Score=362.14  Aligned_cols=345  Identities=22%  Similarity=0.259  Sum_probs=241.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-c--CCcEEEEcCCCCccccccccccccCCcccc-c-c------eecccccc---ccce
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFGE-R-S------VINHTDYL---VNGR   78 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~--g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~-~------~~~~~~~~---~~~~   78 (369)
                      ++||+|||||++|++||..|+ .  +.+|+|||+++.+++....+.......+.. . .      +....+++   .+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            479999999999999999986 3  899999999998765433332222211110 0 1      11112221   2455


Q ss_pred             EE-Eeeeeeeecc--eEEecC---Ce--EEeccEEEEccCCCCCCCCChHH---------HHHHHHHHHHHH--hcCCeE
Q 046865           79 IV-ASPAINITEN--EVLTAE---GR--RVVYDYLVIATGHKDPVPKTRTE---------RLNQYQAENQKI--KSARSI  139 (369)
Q Consensus        79 ~~-~~~~~~~~~~--~v~~~~---g~--~~~~d~lviAtG~~~~~p~~~~~---------~~~~~~~~~~~~--~~~~~v  139 (369)
                      +. ..++..++..  .+.+.+   +.  .+.||+||+|||+.|..|+++..         ...+........  ..++++
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v  162 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKA  162 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEE
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEE
Confidence            53 4567777643  454433   54  79999999999998776654311         122233332222  347899


Q ss_pred             EEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC
Q 046865          140 LIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST  218 (369)
Q Consensus       140 ~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  218 (369)
                      +|+|+|++|+|+|..+.+. .+.+|+++++.+++++ .+++++.+.+.+.+++.||+++++++|.+++.+++.+.+.+.+
T Consensus       163 vViGgG~~g~e~A~~l~~~-~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~  241 (472)
T 3iwa_A          163 VIVGGGFIGLEMAVSLADM-WGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITD  241 (472)
T ss_dssp             EEECCSHHHHHHHHHHHHH-HCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEES
T ss_pred             EEECCCHHHHHHHHHHHHh-cCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeC
Confidence            9999999999999998852 2889999999999999 8999999999999999999999999999998766667788888


Q ss_pred             CcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHH
Q 046865          219 GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKH  290 (369)
Q Consensus       219 g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~  290 (369)
                      |+++++|.||+|+|++|+++++...+  +.++++|+|.||+++|| +.|||||+|||+..+.        +++++.|.+|
T Consensus       242 g~~i~aD~Vv~a~G~~p~~~l~~~~g--l~~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~  318 (472)
T 3iwa_A          242 KRTLDADLVILAAGVSPNTQLARDAG--LELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQ  318 (472)
T ss_dssp             SCEEECSEEEECSCEEECCHHHHHHT--CCBCTTCCEECCTTCBC-SSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHH
T ss_pred             CCEEEcCEEEECCCCCcCHHHHHhCC--ccCCCCCCEEECCCccc-CCCCEEEeccceecccccCCceeecchHHHHHHH
Confidence            98999999999999999998775544  47788999999999998 7999999999984321        3467899999


Q ss_pred             HHHHHHHHHHHhhCCCccc--c--ccc--cCCCcEEEEeecCCCce--------EEcCcc---ccc-ccccceecccccc
Q 046865          291 AQVAAKNLKVLMVGERESK--M--ATY--WPHSAIAIVSLGRKDAV--------AQLPFM---TTI-GCVPGLIKSRDLF  352 (369)
Q Consensus       291 g~~~a~~i~~~~~g~~~~~--~--~~~--~~~~~~~~v~lg~~~~~--------~~~~~~---~~~-g~~~~~~k~~~~~  352 (369)
                      |+++|+||+    |.+...  .  ..+  ..+|+++.+|+++.++.        ..+...   ... +...+++|+  ++
T Consensus       319 g~~aa~~i~----g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--i~  392 (472)
T 3iwa_A          319 GRVIGTNLA----DGDATFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMTLQL--VV  392 (472)
T ss_dssp             HHHHHHHHT----TCCCCCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCEEEEEEEC-----------CEEEEE--EE
T ss_pred             HHHHHHHhc----CCCccCCCCCcceEEEECCceeEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEEEEE--EE
Confidence            999999998    432211  1  010  13688999999876542        222111   122 667899999  99


Q ss_pred             hHHHHHHcCCCCCcc
Q 046865          353 VGKTRKQMGLEPDVA  367 (369)
Q Consensus       353 ~~~~~~ilG~~~~~~  367 (369)
                      ++++++|||+|++|.
T Consensus       393 ~~~~~~ilG~~~~g~  407 (472)
T 3iwa_A          393 DRPTRRVLGIQGFST  407 (472)
T ss_dssp             ETTTCBEEEEEEEES
T ss_pred             ECCCCEEEEEEEECC
Confidence            999999999999997

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=5.4e-47  Score=362.54  Aligned_cols=347  Identities=18%  Similarity=0.183  Sum_probs=254.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc--------------------cccCC-------ccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR--------------------AMVEP-------SFG   63 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~--------------------~~~~~-------~~~   63 (369)
                      .++||+|||||+||++||..|+ .|++|+|||+++.+|..|....                    .+...       ...
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~   84 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLN   84 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccC
Confidence            3689999999999999999997 4999999999977654322100                    00000       000


Q ss_pred             ccceec------------ccccc--ccceEEEeeeeeeecce--EEecC-C-eEEeccEEEEccCCCCCCCCCh---HHH
Q 046865           64 ERSVIN------------HTDYL--VNGRIVASPAINITENE--VLTAE-G-RRVVYDYLVIATGHKDPVPKTR---TER  122 (369)
Q Consensus        64 ~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~--v~~~~-g-~~~~~d~lviAtG~~~~~p~~~---~~~  122 (369)
                      ...+..            ...++  .+++++.+++..++.+.  +.+.+ + +++.||+||+|||+.|..|+++   ...
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~~  164 (474)
T 1zmd_A           85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDT  164 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcCc
Confidence            000000            01111  25788888888787764  44445 4 5799999999999997766532   111


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCce
Q 046865          123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      +.+..+.......+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++ .+++++.+.+.+.++++||++++++.
T Consensus       165 v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~  242 (474)
T 1zmd_A          165 IVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQR--LGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTK  242 (474)
T ss_dssp             EECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             EEcHHHHhhccccCceEEEECCCHHHHHHHHHHHH--cCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCce
Confidence            22222222222357999999999999999999985  4899999999999999 89999999999999999999999999


Q ss_pred             eeeccCCCCC-eEEE-----cCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEeccc
Q 046865          202 VNLDSVSEGS-DTYL-----TSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDI  275 (369)
Q Consensus       202 v~~i~~~~~~-~~v~-----~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~  275 (369)
                      |.+++.+++. +.++     ..+++++++|.||+|+|++|+++++....++++++++|+|.||++||| +.|+|||+|||
T Consensus       243 v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~  321 (474)
T 1zmd_A          243 VTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQT-KIPNIYAIGDV  321 (474)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBC-SSTTEEECGGG
T ss_pred             EEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCcc-CCCCEEEeeec
Confidence            9998765544 5665     346678999999999999999987543334457788899999999998 79999999999


Q ss_pred             CCccccchhHHHHHHHHHHHHHHHHHhhCCCccccccc-----cCCCcEEEEeecCCCce--------EEcCcc-----c
Q 046865          276 TDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATY-----WPHSAIAIVSLGRKDAV--------AQLPFM-----T  337 (369)
Q Consensus       276 ~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~-----~~~~~~~~v~lg~~~~~--------~~~~~~-----~  337 (369)
                      ++.+  ++++.|.+||+++|+||.    +.+....+..     ...|+++.+|+++.++.        ..+++.     .
T Consensus       322 ~~~~--~~~~~A~~~g~~aa~~i~----~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~  395 (474)
T 1zmd_A          322 VAGP--MLAHKAEDEGIICVEGMA----GGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAK  395 (474)
T ss_dssp             SSSC--CCHHHHHHHHHHHHHHHT----TCCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHH
T ss_pred             CCCC--ccHHHHHHHHHHHHHHhc----CCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEEEEEecccchhhh
Confidence            9764  368899999999999997    3321111111     12689999998766542        222221     1


Q ss_pred             ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          338 TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       338 ~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..+...+++|+  ++++++++|||+|++|.+|
T Consensus       396 ~~~~~~~~~k~--~~~~~~~~ilG~~~~g~~a  425 (474)
T 1zmd_A          396 TNADTDGMVKI--LGQKSTDRVLGAHILGPGA  425 (474)
T ss_dssp             HTTCCCCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             hcCCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence            34566789998  9999999999999999874

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.2e-46  Score=358.41  Aligned_cols=343  Identities=21%  Similarity=0.254  Sum_probs=251.7

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------ccc----c---CCcccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RAM----V---EPSFGERS   66 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~~----~---~~~~~~~~   66 (369)
                      ++||+|||||+||++||.+|+ .|++|+|||++ .++..+...                  ...    +   ........
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   81 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAK   81 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence            589999999999999999986 59999999998 444322100                  000    0   00000000


Q ss_pred             eecc------------cccc--ccceEEEeeeeeeecce--EEecCC-eEEeccEEEEccCCCCCCCCChH--HHHHHHH
Q 046865           67 VINH------------TDYL--VNGRIVASPAINITENE--VLTAEG-RRVVYDYLVIATGHKDPVPKTRT--ERLNQYQ  127 (369)
Q Consensus        67 ~~~~------------~~~~--~~~~~~~~~~~~~~~~~--v~~~~g-~~~~~d~lviAtG~~~~~p~~~~--~~~~~~~  127 (369)
                      ....            .+++  .+++++.+++..++.+.  +.+.+| +++.||+||+|||+.|..|+++.  ..+.+..
T Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~v~~~~  161 (455)
T 1ebd_A           82 VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDST  161 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSSEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccceEecHH
Confidence            0000            1111  25788888887777664  444556 68999999999999977665321  0122222


Q ss_pred             HHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccC
Q 046865          128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV  207 (369)
Q Consensus       128 ~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  207 (369)
                      +.......+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.
T Consensus       162 ~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  239 (455)
T 1ebd_A          162 GALNLGEVPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEE  239 (455)
T ss_dssp             HHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEE
T ss_pred             HHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            222222457999999999999999999985  489999999999999999999999999999999999999999999876


Q ss_pred             CCCCeEEEcC---CCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchh
Q 046865          208 SEGSDTYLTS---TGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG  284 (369)
Q Consensus       208 ~~~~~~v~~~---~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~  284 (369)
                      +++.+.+++.   +++++++|.||+|+|++|+++++....++++++++|+|.||++||| +.|+|||+|||++.+  +++
T Consensus       240 ~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~--~~~  316 (455)
T 1ebd_A          240 REDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDIVPGP--ALA  316 (455)
T ss_dssp             ETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSSSC--CCH
T ss_pred             eCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCccc-CCCCEEEEeccCCCc--ccH
Confidence            5554555553   4568999999999999999988544444557788899999999998 799999999999764  368


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcccccccc-------CCCcEEEEeecCCCce--------EEcCcc-----cccccccc
Q 046865          285 FLAQKHAQVAAKNLKVLMVGERESKMATYW-------PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPG  344 (369)
Q Consensus       285 ~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-------~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~  344 (369)
                      +.|.+||+++|+||.    +.+..  +.|.       .+|+++.+|+++.++.        ..+++.     ...+...+
T Consensus       317 ~~A~~~g~~aa~~i~----~~~~~--~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (455)
T 1ebd_A          317 HKASYEGKVAAEAIA----GHPSA--VDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDG  390 (455)
T ss_dssp             HHHHHHHHHHHHHHT----SCCCC--CCCSCCCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHc----CCCcc--CCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcE
Confidence            899999999999997    43211  1221       2588999998765542        222221     13456778


Q ss_pred             eecccccchHHHHHHcCCCCCccCC
Q 046865          345 LIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       345 ~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ++|+  ++++++++|||+|++|.+|
T Consensus       391 ~~k~--~~~~~~~~ilG~~~~g~~a  413 (455)
T 1ebd_A          391 FLKL--VVRKEDGVIIGAQIIGPNA  413 (455)
T ss_dssp             EEEE--EEETTTTEEEEEEEESTTH
T ss_pred             EEEE--EEECCCCEEEEEEEeCCCH
Confidence            9998  9999999999999999874

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.1e-46  Score=360.17  Aligned_cols=345  Identities=19%  Similarity=0.241  Sum_probs=254.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc-------------------c----cC---Ccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA-------------------M----VE---PSFGE   64 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~-------------------~----~~---~~~~~   64 (369)
                      .++||+|||||+||+++|.+|+ .|++|+|||+++.++..+.....                   .    +.   .....
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL   84 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            4689999999999999999997 49999999999766543211000                   0    00   00000


Q ss_pred             cceecc------------cccc--ccceEEEeeeeeeecceEE--ecCC--eEEeccEEEEccCCCCCCCCCh---HHHH
Q 046865           65 RSVINH------------TDYL--VNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDPVPKTR---TERL  123 (369)
Q Consensus        65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~--~~~g--~~~~~d~lviAtG~~~~~p~~~---~~~~  123 (369)
                      ..+...            ..++  .+++++.+.+..++.+.+.  +.+|  .++.||+||+|||+.|..|+++   ...+
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~v  164 (470)
T 1dxl_A           85 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI  164 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCcccE
Confidence            000000            1111  2578888887777776443  3456  6899999999999997766532   1112


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceee
Q 046865          124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       124 ~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      .+..+.......+++++|||+|++|+|+|..|.+.  +.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.
T Consensus       165 ~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~  242 (470)
T 1dxl_A          165 VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRI--GSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVV  242 (470)
T ss_dssp             ECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEE
T ss_pred             EeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEE
Confidence            22222222223579999999999999999999854  8999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCeEEEcC---CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865          204 LDSVSEGSDTYLTS---TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI  278 (369)
Q Consensus       204 ~i~~~~~~~~v~~~---~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~  278 (369)
                      +++.+++.+.+.+.   +|  +++++|.||+|+|++||++++....+++.++++|+|.||++||| +.|+|||+|||++.
T Consensus       243 ~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~  321 (470)
T 1dxl_A          243 GVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIPG  321 (470)
T ss_dssp             EEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBC-SSTTEEECSTTSSS
T ss_pred             EEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCcc-CCCCEEEEeccCCC
Confidence            99866555666653   44  68999999999999999998544445557788899999999997 79999999999976


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhCCCcccccccc-------CCCcEEEEeecCCCce--------EEcCcc-----cc
Q 046865          279 REIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYW-------PHSAIAIVSLGRKDAV--------AQLPFM-----TT  338 (369)
Q Consensus       279 ~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-------~~~~~~~v~lg~~~~~--------~~~~~~-----~~  338 (369)
                      +  ++++.|.+||+++|.||.    +.+..  +.|.       .+|+++.+|+++.++.        ..+++.     ..
T Consensus       322 ~--~~~~~A~~~g~~aa~~i~----g~~~~--~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~  393 (470)
T 1dxl_A          322 P--MLAHKAEEDGVACVEYLA----GKVGH--VDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKA  393 (470)
T ss_dssp             C--CCHHHHHHHHHHHHHHHT----TSCCC--CCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHH
T ss_pred             C--ccHHHHHHHHHHHHHHHc----CCCcC--CCCCCCCEEEECCCceEEEcCCHHHHHhcCCcEEEEEEecccchHHHh
Confidence            4  368899999999999997    33211  1221       2588999998765442        222221     13


Q ss_pred             cccccceecccccchHHHHHHcCCCCCccCC
Q 046865          339 IGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       339 ~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+...+++|+  ++++++++|||+|++|.+|
T Consensus       394 ~~~~~~~~k~--~~~~~~~~ilG~~~~g~~a  422 (470)
T 1dxl_A          394 IDNAEGLVKI--IAEKETDKILGVHIMAPNA  422 (470)
T ss_dssp             HSCCCCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             cCCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence            4567899998  9999999999999999874

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=1.6e-45  Score=350.37  Aligned_cols=340  Identities=20%  Similarity=0.253  Sum_probs=248.5

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcc---cc-cceecccccc--ccceEEEe-e
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSF---GE-RSVINHTDYL--VNGRIVAS-P   83 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~--~~~~~~~~-~   83 (369)
                      +||||||||++|+++|..|++   |.+|+|||+++.+++....+..+.....   .. .......+++  .+++++.+ .
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   80 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ   80 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence            589999999999999999863   8999999999876543332221111111   01 1111111112  25676444 4


Q ss_pred             eeeee--cceEEecC-----CeEEeccEEEEccCCCCCCCCChH---H------HHHHHHHHHHHHhcCCeEEEEcCChh
Q 046865           84 AINIT--ENEVLTAE-----GRRVVYDYLVIATGHKDPVPKTRT---E------RLNQYQAENQKIKSARSILIVGGGPT  147 (369)
Q Consensus        84 ~~~~~--~~~v~~~~-----g~~~~~d~lviAtG~~~~~p~~~~---~------~~~~~~~~~~~~~~~~~v~vvG~G~~  147 (369)
                      +..++  .+.+.+.+     +.++.||+||+|||++|..|+++.   .      .+.+..........+++++|+|+|++
T Consensus        81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~  160 (452)
T 2cdu_A           81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYI  160 (452)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHH
T ss_pred             EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHH
Confidence            66676  34565543     467999999999999977665431   1      12344444555677999999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCCcEEecc
Q 046865          148 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKAD  225 (369)
Q Consensus       148 g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d  225 (369)
                      |+|+|..|.+  .+.+|+++++.+++++ .+++++.+.+.+.++++||+++++++|.+++.+++.+. +.+ +|+++++|
T Consensus       161 g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D  237 (452)
T 2cdu_A          161 GAELAEAYSN--QNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSD  237 (452)
T ss_dssp             HHHHHHHHHT--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEES
T ss_pred             HHHHHHHHHh--cCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECC
Confidence            9999999984  4899999999999998 78999999999999999999999999999875344443 444 77899999


Q ss_pred             EEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHH
Q 046865          226 CHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKN  297 (369)
Q Consensus       226 ~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~  297 (369)
                      .||+|+|++|+++++...   +.++++|+|.||++||| +.|+|||+|||+..+.        +++++.|.+||+++|+|
T Consensus       238 ~vv~a~G~~p~~~ll~~~---l~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  313 (452)
T 2cdu_A          238 IAILCIGFRPNTELLKGK---VAMLDNGAIITDEYMHS-SNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLN  313 (452)
T ss_dssp             EEEECCCEEECCGGGTTT---SCBCTTSCBCCCTTSBC-SSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHT
T ss_pred             EEEECcCCCCCHHHHHHh---hhcCCCCCEEECCCcCc-CCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHH
Confidence            999999999999987544   36778899999999998 7999999999998642        35789999999999999


Q ss_pred             HHHHhhCCCcccccccc-------CCCcEEEEeecCCCceE--------EcCcc---cc-cccccceecccccchHHHHH
Q 046865          298 LKVLMVGERESKMATYW-------PHSAIAIVSLGRKDAVA--------QLPFM---TT-IGCVPGLIKSRDLFVGKTRK  358 (369)
Q Consensus       298 i~~~~~g~~~~~~~~~~-------~~~~~~~v~lg~~~~~~--------~~~~~---~~-~g~~~~~~k~~~~~~~~~~~  358 (369)
                      |.    |.+.. ...+.       ..|+++.+|+.+.++..        .+...   .. .+...+++|+  ++++++++
T Consensus       314 i~----g~~~~-~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~~~~  386 (452)
T 2cdu_A          314 LT----EDKVK-DMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSL--VYDPKTRV  386 (452)
T ss_dssp             SS----SCCCC-CCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEE--EECTTTCB
T ss_pred             hC----CCCCc-CCCccceEEEEECCeeeEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEE--EEECCCCE
Confidence            97    43211 11110       14688888887554421        11110   11 2445689998  99999999


Q ss_pred             HcCCCCCcc
Q 046865          359 QMGLEPDVA  367 (369)
Q Consensus       359 ilG~~~~~~  367 (369)
                      |||+|++|.
T Consensus       387 ilG~~~~g~  395 (452)
T 2cdu_A          387 ILGGALSSM  395 (452)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEEcC
Confidence            999999987

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=3.4e-46  Score=360.02  Aligned_cols=348  Identities=15%  Similarity=0.112  Sum_probs=249.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC--------Ccccccccc------------------cc---c-cC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWASL------------------RA---M-VE   59 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~--------~~~~~~~~~------------------~~---~-~~   59 (369)
                      ..++||+|||||+||++||..|+ .|.+|+|||+++        .+|..+...                  ..   + +.
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~  109 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK  109 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence            34689999999999999999986 599999999864        344322110                  00   0 00


Q ss_pred             ----Ccccccceecccc------------c--cccceEEEeeeeeeecceEEe--cCCe--EEeccEEEEccCCCCCCCC
Q 046865           60 ----PSFGERSVINHTD------------Y--LVNGRIVASPAINITENEVLT--AEGR--RVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        60 ----~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~v~~--~~g~--~~~~d~lviAtG~~~~~p~  117 (369)
                          ..........+.+            .  ..+++++.+.+.+++++.+..  .+|+  ++.||+||||||++|..|+
T Consensus       110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~p~  189 (519)
T 3qfa_A          110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG  189 (519)
T ss_dssp             CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECCCC
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCCCC
Confidence                0111111111100            0  136788999999998875443  4453  7999999999999988877


Q ss_pred             ChHHH--HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcE
Q 046865          118 TRTER--LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD  195 (369)
Q Consensus       118 ~~~~~--~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~  195 (369)
                      ++...  ..+..........+++++|||+|++|+|+|..|.+  .+.+|+++++. ++++.+++++.+.+.+.|++.||+
T Consensus       190 i~G~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~  266 (519)
T 3qfa_A          190 IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIK  266 (519)
T ss_dssp             CTTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecc-cccccCCHHHHHHHHHHHHHCCCE
Confidence            65422  11122222223457899999999999999999985  48999999985 788999999999999999999999


Q ss_pred             EEeCceeeeccCCC----CCeEE--EcCCC-c--EEeccEEEEcCCCCCCchhhcccccCCCCC-CCCcEEeCCceeecc
Q 046865          196 VKLGQRVNLDSVSE----GSDTY--LTSTG-D--TIKADCHFLCTGKPVGSDWLKDTILKDSLD-TDGMLMVDENLRVKG  265 (369)
Q Consensus       196 i~~~~~v~~i~~~~----~~~~v--~~~~g-~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~-~~g~i~vd~~l~~~~  265 (369)
                      +++++.+.+++..+    +.+.+  ...+| +  ++++|.||+|+|++|+++++....++++++ ++|+|.||+++|| +
T Consensus       267 v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~T-s  345 (519)
T 3qfa_A          267 FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT-N  345 (519)
T ss_dssp             EEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBC-S
T ss_pred             EEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCcc-C
Confidence            99998877665322    23333  33455 2  578999999999999999865555666777 5799999999998 7


Q ss_pred             CCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccc-ccccc-----CCCcEEEEeecCCCceEE-------
Q 046865          266 QKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESK-MATYW-----PHSAIAIVSLGRKDAVAQ-------  332 (369)
Q Consensus       266 ~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~~~v~lg~~~~~~~-------  332 (369)
                      .|||||+|||+.. .+++++.|..||+++|+||+    +..... .+...     ..|+++.+|+++.+|...       
T Consensus       346 ~~~IyA~GD~~~g-~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~  420 (519)
T 3qfa_A          346 VPYIYAIGDILED-KVELTPVAIQAGRLLAQRLY----AGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIE  420 (519)
T ss_dssp             STTEEECGGGBSS-SCCCHHHHHHHHHHHHHHHH----SCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEE
T ss_pred             CCCEEEEEeccCC-CCccHHHHHHHHHHHHHHHc----CCCCccCCCCcCcEEEECCCceEEecCCHHHHHhhCCCCCEE
Confidence            9999999999842 23478999999999999998    432111 11111     268999999988765432       


Q ss_pred             ---cCccc----c--cccccceecccccchH-HHHHHcCCCCCccCC
Q 046865          333 ---LPFMT----T--IGCVPGLIKSRDLFVG-KTRKQMGLEPDVAHA  369 (369)
Q Consensus       333 ---~~~~~----~--~g~~~~~~k~~~~~~~-~~~~ilG~~~~~~~~  369 (369)
                         .++..    .  .+...+++|+  ++++ ++++|||+|++|.||
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~g~~Kl--i~~~~~~~~ilGa~i~g~~a  465 (519)
T 3qfa_A          421 VYHSYFWPLEWTIPSRDNNKCYAKI--ICNTKDNERVVGFHVLGPNA  465 (519)
T ss_dssp             EEEEEECCHHHHTTTCCTTTEEEEE--EEETTTTCEEEEEEEESTTH
T ss_pred             EEEEeccchhhhhhccCCCcEEEEE--EEecCCCCEEEEEEEECCCH
Confidence               11111    1  1345799998  9997 589999999999874

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=3.9e-46  Score=355.70  Aligned_cols=344  Identities=19%  Similarity=0.218  Sum_probs=251.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--------c----------c-cccCCc------ccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--------L----------R-AMVEPS------FGERS   66 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--------~----------~-~~~~~~------~~~~~   66 (369)
                      ++||+|||||+||+++|..|+ .|++|+|||++. ++..+..        +          . ......      .....
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGI   81 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHH
Confidence            489999999999999999997 599999999983 4322110        0          0 000000      00000


Q ss_pred             eec------------ccccc--ccceEEEeeeeeeecce--EEecCC--eEEeccEEEEccCCCCCCCCChH--HHHHHH
Q 046865           67 VIN------------HTDYL--VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPKTRT--ERLNQY  126 (369)
Q Consensus        67 ~~~------------~~~~~--~~~~~~~~~~~~~~~~~--v~~~~g--~~~~~d~lviAtG~~~~~p~~~~--~~~~~~  126 (369)
                      ...            ..+++  .+++++.+....++.+.  +.+.+|  +++.||+||+|||+.|..|+++.  ..+.+.
T Consensus        82 ~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~~~~~  161 (464)
T 2a8x_A           82 AYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVTY  161 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTTEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCceEEec
Confidence            000            01111  25778877776666653  445566  68999999999999977654321  112222


Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .+.......+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.++++||++++++.|.+++
T Consensus       162 ~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  239 (464)
T 2a8x_A          162 EEQILSRELPKSIIIAGAGAIGMEFGYVLKN--YGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIA  239 (464)
T ss_dssp             HHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEE
T ss_pred             HHHhhccccCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEE
Confidence            2222222357999999999999999999985  48999999999999999999999999999999999999999999987


Q ss_pred             CCCCCeEEEcC-CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865          207 VSEGSDTYLTS-TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ  283 (369)
Q Consensus       207 ~~~~~~~v~~~-~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~  283 (369)
                      .+++.+.+.+. +|  +++++|.||+|+|++||++++....+++.++++|+|.||++||| +.|+|||+|||++.+  ++
T Consensus       240 ~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~--~~  316 (464)
T 2a8x_A          240 DGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT-NVGHIYAIGDVNGLL--QL  316 (464)
T ss_dssp             ECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBC-SSTTEEECGGGGCSS--CS
T ss_pred             EcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCcc-CCCCEEEeECcCCCc--cC
Confidence            65555666654 56  57999999999999999988543334456788899999999997 799999999999764  36


Q ss_pred             hHHHHHHHHHHHHHHHHHhhC-CCcccccccc-------CCCcEEEEeecCCCce--------EEcCcc-----cccccc
Q 046865          284 GFLAQKHAQVAAKNLKVLMVG-ERESKMATYW-------PHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCV  342 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~~~g-~~~~~~~~~~-------~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~  342 (369)
                      ++.|.+||+++|+||.    | .+. +...|.       .+|+++.+|+++.++.        ..+++.     ...+..
T Consensus       317 ~~~A~~~g~~aa~~i~----g~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  391 (464)
T 2a8x_A          317 AHVAEAQGVVAAETIA----GAETL-TLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDP  391 (464)
T ss_dssp             HHHHHHHHHHHHHHHH----TCCCC-CCCCGGGSCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhc----CCCCc-ccCCCCCCCEEEECCCCeEEEcCCHHHHHhcCCCEEEEEEEcchhhhhhhcCCC
Confidence            8899999999999998    4 221 101121       2588999998765442        222221     134566


Q ss_pred             cceecccccchHHHHHHcCCCCCccCC
Q 046865          343 PGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       343 ~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+++|+  ++++++++|||+|++|.+|
T Consensus       392 ~~~~k~--~~~~~~~~ilG~~~~g~~a  416 (464)
T 2a8x_A          392 SGFVKL--VADAKHGELLGGHLVGHDV  416 (464)
T ss_dssp             CCEEEE--EEETTTTEEEEEEEEETTG
T ss_pred             cEEEEE--EEECCCCEEEEEEEECcCH
Confidence            789998  9999999999999999875

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=8.7e-46  Score=353.56  Aligned_cols=344  Identities=20%  Similarity=0.238  Sum_probs=252.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc---------------------cccc--cC---Ccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---------------------LRAM--VE---PSFGE   64 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~---------------------~~~~--~~---~~~~~   64 (369)
                      .++||+|||||++|+++|++|+ .|++|+|||++ .+|..|..                     ....  +.   +....
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR   81 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence            4689999999999999999986 59999999998 44432211                     0000  00   00000


Q ss_pred             ccee-------------cccccc---ccceEEEeeeeeeecce--EEecCC--eEEeccEEEEccCCCCCCCCChHH---
Q 046865           65 RSVI-------------NHTDYL---VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPKTRTE---  121 (369)
Q Consensus        65 ~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~--v~~~~g--~~~~~d~lviAtG~~~~~p~~~~~---  121 (369)
                      ..+.             .+.+++   .+++++.+++..++...  +.+.+|  +++.||+||+|||++|..|+++..   
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~  161 (467)
T 1zk7_A           82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKES  161 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTTTS
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCCcC
Confidence            0000             011222   26788888888888764  455567  689999999999998776654321   


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCce
Q 046865          122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      .+.+..+.......+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++ +++++.+.+.+.+++.||+++++++
T Consensus       162 ~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~  238 (467)
T 1zk7_A          162 PYWTSTEALASDTIPERLAVIGSSVVALELAQAFAR--LGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQ  238 (467)
T ss_dssp             CCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCC
T ss_pred             ceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCE
Confidence            112222333333458999999999999999999985  4899999999999999 9999999999999999999999999


Q ss_pred             eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc
Q 046865          202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI  281 (369)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~  281 (369)
                      |.+++.+++...+.++ +.++++|.||+|+|++|+++++....++++++++|+|.||+++|| +.|+|||+|||+..+. 
T Consensus       239 v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~-  315 (467)
T 1zk7_A          239 ASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTDQPQ-  315 (467)
T ss_dssp             EEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSTTBSSCC-
T ss_pred             EEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCccc-CCCCEEEEeccCCCcc-
Confidence            9998765554556665 458999999999999999887544445557788899999999998 7999999999998654 


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhCCCcc---ccccc--cCCCcEEEEeecCCCce--------EEcCccc-----cccccc
Q 046865          282 KQGFLAQKHAQVAAKNLKVLMVGERES---KMATY--WPHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVP  343 (369)
Q Consensus       282 ~~~~~A~~~g~~~a~~i~~~~~g~~~~---~~~~~--~~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~  343 (369)
                       +.+.|..||+++|.||..    .+..   ...++  ..+|+++.+|+.+.++.        ..+++..     ..+...
T Consensus       316 -~~~~A~~~g~~aa~~i~~----~~~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  390 (467)
T 1zk7_A          316 -FVYVAAAAGTRAAINMTG----GDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTR  390 (467)
T ss_dssp             -CHHHHHHHHHHHHHHHTT----CCCCCCCTTCEEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCC
T ss_pred             -cHHHHHHHHHHHHHHHcC----CCcccCCCCCCEEEecCCceEEEecCHHHHHhcCCCeEEEEEecccchhhhhcCCCc
Confidence             678999999999999973    2111   11111  13588899998765432        2222211     235567


Q ss_pred             ceecccccchHHHHHHcCCCCCccCC
Q 046865          344 GLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       344 ~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      +++|+  ++++++++|||+|++|.+|
T Consensus       391 ~~~kl--~~~~~~~~ilG~~~~g~~a  414 (467)
T 1zk7_A          391 GFIKL--VIEEGSHRLIGVQAVAPEA  414 (467)
T ss_dssp             CEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             EEEEE--EEECCCCEEEEEEEECCCH
Confidence            89998  9999999999999998764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.5e-47  Score=363.55  Aligned_cols=345  Identities=19%  Similarity=0.190  Sum_probs=255.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-c---CCcEEEEcCCCCcccccccc------------------ccccCCc---------
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASL------------------RAMVEPS---------   61 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~---g~~V~lie~~~~~~~~~~~~------------------~~~~~~~---------   61 (369)
                      ++||||||||++|++||++|+ .   |++|+|||+++ +|..+...                  ..+....         
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK   80 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence            589999999999999999985 4   89999999987 54321110                  0000000         


Q ss_pred             ccccceec------------ccccc--ccceEEEeeeeeeec------ce--EEecCCe--EEeccEEEEccCCCCCCCC
Q 046865           62 FGERSVIN------------HTDYL--VNGRIVASPAINITE------NE--VLTAEGR--RVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        62 ~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~------~~--v~~~~g~--~~~~d~lviAtG~~~~~p~  117 (369)
                      ........            ..+++  .+++++.+.+..++.      +.  +...+++  .+.||+||+|||+.|..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~  160 (499)
T 1xdi_A           81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP  160 (499)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence            00000000            11111  257888888888876      43  4445565  7999999999999987765


Q ss_pred             ChH---HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCc
Q 046865          118 TRT---ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       118 ~~~---~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv  194 (369)
                      ++.   ..+.+..+.......+++++|+|+|++|+|+|..+..  .+.+|+++++.+++++.+++++.+.+.+.+++.||
T Consensus       161 i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV  238 (499)
T 1xdi_A          161 SAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTE--LGVPVTVVASQDHVLPYEDADAALVLEESFAERGV  238 (499)
T ss_dssp             GGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHH--TTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCC
Confidence            431   1111111122222357899999999999999999985  48999999999999999999999999999999999


Q ss_pred             EEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecc
Q 046865          195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGD  274 (369)
Q Consensus       195 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD  274 (369)
                      +++++++|.+++.+++.+.+.+.+|+++++|.||+|+|++|+++++....++++++++|+|.||++||| +.|+|||+||
T Consensus       239 ~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD  317 (499)
T 1xdi_A          239 RLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGD  317 (499)
T ss_dssp             EEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBC-SSTTEEECSG
T ss_pred             EEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCccc-CCCCEEEEec
Confidence            999999999998666567777888889999999999999999988544445557788899999999998 7999999999


Q ss_pred             cCCccccchhHHHHHHHHHHHHHHHHHhhCCCcccc-c---cc--cCCCcEEEEeecCCCc--------eEEcCcc----
Q 046865          275 ITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKM-A---TY--WPHSAIAIVSLGRKDA--------VAQLPFM----  336 (369)
Q Consensus       275 ~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~-~---~~--~~~~~~~~v~lg~~~~--------~~~~~~~----  336 (369)
                      |++.+.  +++.|.+||+++|+||.    |....+. +   ++  ..+|+++.+|+++.++        +..+++.    
T Consensus       318 ~~~~~~--l~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~  391 (499)
T 1xdi_A          318 CTGLLP--LASVAAMQGRIAMYHAL----GEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNAR  391 (499)
T ss_dssp             GGTSCS--CHHHHHHHHHHHHHHHT----TCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHH
T ss_pred             cCCCcc--cHHHHHHHHHHHHHHhc----CCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhCCCCEEEEEEecCcccc
Confidence            998653  67899999999999997    4311111 1   11  1358899999876544        2223221    


Q ss_pred             -cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          337 -TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       337 -~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                       ...+...+++|+  ++++++++|||+|++|.+|
T Consensus       392 ~~~~~~~~g~~k~--~~~~~~~~ilG~~~~g~~a  423 (499)
T 1xdi_A          392 AKMSEMRHGFVKI--FCRRSTGVVIGGVVVAPIA  423 (499)
T ss_dssp             HHHTTCSSCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             eeecCCCceEEEE--EEECCCCEEEEEEEECCch
Confidence             134667899998  9999899999999999764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=1.2e-45  Score=354.01  Aligned_cols=347  Identities=17%  Similarity=0.085  Sum_probs=251.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC---------Ccccccccc------------------c---cc-c
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE---------YFEITWASL------------------R---AM-V   58 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~---------~~~~~~~~~------------------~---~~-~   58 (369)
                      ..++||+|||||+||++||.+|+ .|++|+|||+++         .+|..|...                  .   .+ +
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~   86 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW   86 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence            35799999999999999999986 599999999421         133222110                  0   00 0


Q ss_pred             C----Ccccccceeccc------------cc--cccceEEEeeeeeeecceE--EecCC-eEEeccEEEEccCCCCCCCC
Q 046865           59 E----PSFGERSVINHT------------DY--LVNGRIVASPAINITENEV--LTAEG-RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        59 ~----~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~d~lviAtG~~~~~p~  117 (369)
                      .    ..........+.            ..  ..+++++.+.+.+++++.+  .+.++ +++.||+||||||+.|..|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~p~  166 (483)
T 3dgh_A           87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPD  166 (483)
T ss_dssp             CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECCCS
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCCCC
Confidence            0    001110000000            00  1257888898888887754  44455 47999999999999988776


Q ss_pred             ChHHHH--HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcE
Q 046865          118 TRTERL--NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD  195 (369)
Q Consensus       118 ~~~~~~--~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~  195 (369)
                      ++....  .+..........+++++|||+|++|+|+|..|.+  .+.+|+++++ +++++.+++++.+.+.+.|+++||+
T Consensus       167 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~-~~~l~~~d~~~~~~l~~~l~~~Gv~  243 (483)
T 3dgh_A          167 IPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKG--LGYEPTVMVR-SIVLRGFDQQMAELVAASMEERGIP  243 (483)
T ss_dssp             STTHHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEES-SCSSTTSCHHHHHHHHHHHHHTTCC
T ss_pred             CCCcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHH--cCCEEEEEeC-CCCCcccCHHHHHHHHHHHHhCCCE
Confidence            653211  1122222223457899999999999999999985  4899999998 4688899999999999999999999


Q ss_pred             EEeCceeeeccCCCC-CeEEEcCCCc-----EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCe
Q 046865          196 VKLGQRVNLDSVSEG-SDTYLTSTGD-----TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNI  269 (369)
Q Consensus       196 i~~~~~v~~i~~~~~-~~~v~~~~g~-----~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i  269 (369)
                      +++++.+.+++.+++ .+.+++.+++     ++++|.||+|+|++|+++++.....++++++ |+|.||+++|| +.|+|
T Consensus       244 i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t-~~~~I  321 (483)
T 3dgh_A          244 FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEAT-NVANI  321 (483)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBC-SSTTE
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCcc-CCCCE
Confidence            999999998876433 4566665543     7999999999999999998865556667777 99999999998 79999


Q ss_pred             EEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccc-ccccc-----CCCcEEEEeecCCCceEE----------c
Q 046865          270 FAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESK-MATYW-----PHSAIAIVSLGRKDAVAQ----------L  333 (369)
Q Consensus       270 ~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~-~~~~~-----~~~~~~~v~lg~~~~~~~----------~  333 (369)
                      ||+|||+.. .+++++.|..||+++|+||+    |..... .+...     ..|+++.+|+++.++...          .
T Consensus       322 yA~GD~~~~-~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~  396 (483)
T 3dgh_A          322 YAVGDIIYG-KPELTPVAVLAGRLLARRLY----GGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHG  396 (483)
T ss_dssp             EECSTTBTT-SCCCHHHHHHHHHHHHHHHH----SCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEE
T ss_pred             EEEEcccCC-CCccHHHHHHHHHHHHHHHc----CCCCCcCCCCCCCEEEECCCccEEEeCCHHHHHhhCCCCCEEEEEE
Confidence            999999842 23478899999999999998    432111 11111     268999999988765422          1


Q ss_pred             Cccc------ccccccceecccccchHH-HHHHcCCCCCccCC
Q 046865          334 PFMT------TIGCVPGLIKSRDLFVGK-TRKQMGLEPDVAHA  369 (369)
Q Consensus       334 ~~~~------~~g~~~~~~k~~~~~~~~-~~~ilG~~~~~~~~  369 (369)
                      ++..      ..+...+++|+  +++++ +++|||+|++|.||
T Consensus       397 ~~~~~~~~~~~~~~~~~~~k~--i~~~~~~~~ilG~~~~g~~a  437 (483)
T 3dgh_A          397 YYKPTEFFIPQKSVRYCYLKA--VAERHGDQRVYGLHYIGPVA  437 (483)
T ss_dssp             ECCCGGGTTTTCCCTTCEEEE--EEESSTTCBEEEEEEEETTH
T ss_pred             eecchhhhhhccCCCcEEEEE--EEecCCCCEEEEEEEECCCH
Confidence            1111      12346789998  99986 99999999999874

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=2.2e-45  Score=359.06  Aligned_cols=345  Identities=18%  Similarity=0.239  Sum_probs=254.1

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccc--ccceecccccc---ccceEE-Eeee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTDYL---VNGRIV-ASPA   84 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~-~~~~   84 (369)
                      +||+|||||+||++||..|++   +.+|+|||+++++++....+.........  ...+....+++   .++++. ..++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            699999999999999999863   79999999999887654433332222111  11122222211   145653 4667


Q ss_pred             eeeecc--eEEecC---C--eEEeccEEEEccCCCCCCCCChH---------HHHHHHHHHHH--HHhcCCeEEEEcCCh
Q 046865           85 INITEN--EVLTAE---G--RRVVYDYLVIATGHKDPVPKTRT---------ERLNQYQAENQ--KIKSARSILIVGGGP  146 (369)
Q Consensus        85 ~~~~~~--~v~~~~---g--~~~~~d~lviAtG~~~~~p~~~~---------~~~~~~~~~~~--~~~~~~~v~vvG~G~  146 (369)
                      ..++..  .+.+.+   +  .++.||+||+|||++|..|+++.         ..+.+......  ....+++++|||+|+
T Consensus        82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~  161 (565)
T 3ntd_A           82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGF  161 (565)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred             EEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCH
Confidence            777643  444432   4  37999999999999876554321         11222222222  224578999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccC-------------------
Q 046865          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV-------------------  207 (369)
Q Consensus       147 ~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-------------------  207 (369)
                      +|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.+.+++.                   
T Consensus       162 ~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~  239 (565)
T 3ntd_A          162 IGLEMMESLHH--LGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH  239 (565)
T ss_dssp             HHHHHHHHHHH--TTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCC
T ss_pred             HHHHHHHHHHh--cCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccccccccc
Confidence            99999999985  489999999999999999999999999999999999999999998875                   


Q ss_pred             CCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc--------
Q 046865          208 SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR--------  279 (369)
Q Consensus       208 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~--------  279 (369)
                      .++.+.+.+.+|+++++|.||+|+|++|+++++...+  +.++++|+|.||+++|| +.|+|||+|||+..+        
T Consensus       240 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g--~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~  316 (565)
T 3ntd_A          240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAG--LAIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQAC  316 (565)
T ss_dssp             TTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHT--CCBCTTSSBCCCTTCBC-SSTTEEECGGGBCEEBTTTCCEE
T ss_pred             CCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCC--cccCCCCCEEECCCccc-CCCCEEEeeeeEeeccccCCcee
Confidence            3445667788898999999999999999998876544  46788999999999998 799999999998532        


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhCCCccc-ccc--c---cCCCcEEEEeecCCCce--------EEcCc---ccc-ccc
Q 046865          280 EIKQGFLAQKHAQVAAKNLKVLMVGERESK-MAT--Y---WPHSAIAIVSLGRKDAV--------AQLPF---MTT-IGC  341 (369)
Q Consensus       280 ~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~-~~~--~---~~~~~~~~v~lg~~~~~--------~~~~~---~~~-~g~  341 (369)
                      .+++++.|.+||+++|+||+    |..... ..+  +   ..+|+++.+|+.+.++.        ..+..   ... .+.
T Consensus       317 ~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~  392 (565)
T 3ntd_A          317 LVPLAGPANRQGRMAADNMF----GREERYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGA  392 (565)
T ss_dssp             CCCCHHHHHHHHHHHHHHHT----TCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTC
T ss_pred             ecccHHHHHHHHHHHHHHhc----CCCccCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEEecCcccCcCCCC
Confidence            12468899999999999998    432211 011  0   12578999999776542        11111   112 266


Q ss_pred             ccceecccccchHHHHHHcCCCCCccCC
Q 046865          342 VPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       342 ~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..+++|+  ++++++++|||+|++|.||
T Consensus       393 ~~~~~k~--v~~~~~~~ilG~~~~g~~a  418 (565)
T 3ntd_A          393 EVVSFKL--LFDPVKGTIFGAQAVGKDG  418 (565)
T ss_dssp             CEEEEEE--EECTTTCBEEEEEEEESSS
T ss_pred             ceEEEEE--EEECCCCEEEEEEEECCcc
Confidence            7789998  9999999999999999886

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=7.1e-46  Score=355.82  Aligned_cols=347  Identities=18%  Similarity=0.123  Sum_probs=251.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcC--------CCCcccccccc------------------c---cc-c--
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP--------KEYFEITWASL------------------R---AM-V--   58 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~--------~~~~~~~~~~~------------------~---~~-~--   58 (369)
                      .++||+|||||+||++||..|+ .|.+|+|||+        ...+|..|...                  .   .+ +  
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            4699999999999999999986 5999999997        33444322110                  0   00 0  


Q ss_pred             --CCcccccceeccc------------cc--cccceEEEeeeeeeecceE--EecCC--eEEeccEEEEccCCCCCCCC-
Q 046865           59 --EPSFGERSVINHT------------DY--LVNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDPVPK-  117 (369)
Q Consensus        59 --~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v--~~~~g--~~~~~d~lviAtG~~~~~p~-  117 (369)
                        ...........+.            ..  ..+++++.+.+.+++++.+  ...+|  .++.||+||||||+.|..|+ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~  164 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQ  164 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSS
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCC
Confidence              0011100011000            00  1257889999999887754  44455  57999999999999988776 


Q ss_pred             ChHHHH--HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcE
Q 046865          118 TRTERL--NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD  195 (369)
Q Consensus       118 ~~~~~~--~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~  195 (369)
                      ++....  .+..........+++++|||+|++|+|+|..|.+  .+.+|+++++. .+++.+++++.+.+.+.++++||+
T Consensus       165 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~gv~  241 (488)
T 3dgz_A          165 VKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTG--IGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHGTQ  241 (488)
T ss_dssp             CBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEcC-cccccCCHHHHHHHHHHHHHCCCE
Confidence            653211  1222222233467899999999999999999985  48999999986 578889999999999999999999


Q ss_pred             EEeCceeeeccCC-CCCeEEEcCC---Cc--EEeccEEEEcCCCCCCchhhcccccCCCCC-CCCcEEeCCceeeccCCC
Q 046865          196 VKLGQRVNLDSVS-EGSDTYLTST---GD--TIKADCHFLCTGKPVGSDWLKDTILKDSLD-TDGMLMVDENLRVKGQKN  268 (369)
Q Consensus       196 i~~~~~v~~i~~~-~~~~~v~~~~---g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~-~~g~i~vd~~l~~~~~~~  268 (369)
                      +++++.+.+++.. ++.+.+++.+   |+  ++++|.||+|+|++|+++++.....++.++ ++|+|.||+++|| +.||
T Consensus       242 ~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t-~~~~  320 (488)
T 3dgz_A          242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEAT-SVPH  320 (488)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBC-SSTT
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCcc-CCCC
Confidence            9999999988653 3445565543   54  479999999999999999876555666788 7899999999998 7999


Q ss_pred             eEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCccc-cccc-----cCCCcEEEEeecCCCceEE----------
Q 046865          269 IFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESK-MATY-----WPHSAIAIVSLGRKDAVAQ----------  332 (369)
Q Consensus       269 i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~-~~~~-----~~~~~~~~v~lg~~~~~~~----------  332 (369)
                      |||+|||+.. .+++++.|..||+++|+||+    +..... .+..     ...|+++.+|+++.++...          
T Consensus       321 IyA~GD~~~~-~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~  395 (488)
T 3dgz_A          321 IYAIGDVAEG-RPELTPTAIKAGKLLAQRLF----GKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYH  395 (488)
T ss_dssp             EEECGGGBTT-CCCCHHHHHHHHHHHHHHHH----SCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEE
T ss_pred             EEEeEEecCC-CCcchhHHHHHHHHHHHHHc----CCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCCCcEEEEE
Confidence            9999999843 23468899999999999998    432111 1111     1368999999987765421          


Q ss_pred             cCccc------ccccccceecccccch-HHHHHHcCCCCCccCC
Q 046865          333 LPFMT------TIGCVPGLIKSRDLFV-GKTRKQMGLEPDVAHA  369 (369)
Q Consensus       333 ~~~~~------~~g~~~~~~k~~~~~~-~~~~~ilG~~~~~~~~  369 (369)
                      .++..      ..+...+++|+  +++ +++++|||+|++|.||
T Consensus       396 ~~~~~~~~~~~~~~~~~g~~k~--i~~~~~~~~ilG~~~~g~~a  437 (488)
T 3dgz_A          396 AYYKPLEFTVADRDASQCYIKM--VCMREPPQLVLGLHFLGPNA  437 (488)
T ss_dssp             EECCCHHHHHTTCCCTTCEEEE--EEESSTTCBEEEEEEEETTH
T ss_pred             ccccchhhhhhccCCCcEEEEE--EEecCCCCEEEEEEEECCCH
Confidence            11111      11236799998  999 5899999999999874

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=4.4e-45  Score=337.44  Aligned_cols=323  Identities=24%  Similarity=0.313  Sum_probs=234.8

Q ss_pred             cceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCccccccccccccCCcccccce-ecccccc--ccceEEEe-eeeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGERSV-INHTDYL--VNGRIVAS-PAINI   87 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~-~~~~~   87 (369)
                      ..||+|||||+||++||..|++ | +|+|||+++...+....+............. ....+++  .+++++.+ .+..+
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~i   86 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   86 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEEE
Confidence            4699999999999999999974 7 9999999987654322222222211111111 1122222  25777776 47788


Q ss_pred             ecc--eEEecCCeEEeccEEEEccCCCCCCCCChH-H------HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhh
Q 046865           88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT-E------RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD  158 (369)
Q Consensus        88 ~~~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~-~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~  158 (369)
                      ++.  .|. .+++++.||+||||||++|..|+++. +      .+.+.....+....+++++|+|+|++|+|+|..|.+ 
T Consensus        87 d~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~-  164 (367)
T 1xhc_A           87 DRGRKVVI-TEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAE-  164 (367)
T ss_dssp             ETTTTEEE-ESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHH-
T ss_pred             ECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHh-
Confidence            754  565 67788999999999999987766542 1      123333333333356899999999999999999985 


Q ss_pred             CCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          159 FPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       159 ~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                       .+.+|+++++.+++++ +++++.+.+.+.++++||+++++++|.+++.  +  .+++++|+ +++|.||+|+|++||++
T Consensus       165 -~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~--~v~~~~g~-i~~D~vi~a~G~~p~~~  237 (367)
T 1xhc_A          165 -AGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANE--E--GVLTNSGF-IEGKVKICAIGIVPNVD  237 (367)
T ss_dssp             -TTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--S--EEEETTEE-EECSCEEEECCEEECCH
T ss_pred             -CCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--e--EEEECCCE-EEcCEEEECcCCCcCHH
Confidence             4899999999999999 9999999999999999999999999998862  2  46777887 99999999999999998


Q ss_pred             hhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--cchhHHHHHHHHHHHHHHHHHhhCCCc--cccccc-
Q 046865          239 WLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--IKQGFLAQKHAQVAAKNLKVLMVGERE--SKMATY-  313 (369)
Q Consensus       239 ~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~~~~~~A~~~g~~~a~~i~~~~~g~~~--~~~~~~-  313 (369)
                      ++...++  ..+ +| |.||++||| +.|||||+|||+..+.  +++++.|.+||+++|+||.    +.+.  ....++ 
T Consensus       238 ll~~~gl--~~~-~g-i~Vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~----g~~~~~~~~~~~~  308 (367)
T 1xhc_A          238 LARRSGI--HTG-RG-ILIDDNFRT-SAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILK----GEPRRYNFKFRST  308 (367)
T ss_dssp             HHHHTTC--CBS-SS-EECCTTSBC-SSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHT----TCCCCCCSSCCEE
T ss_pred             HHHhCCC--CCC-CC-EEECCCccc-CCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhc----CCCccCCCCCCce
Confidence            7766554  444 45 999999998 7999999999986422  3578899999999999997    3221  111111 


Q ss_pred             ---cCCCcEEEEeecCCCceEEcCcccccccccceecccccchHHHHHHcCCCCCccC
Q 046865          314 ---WPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAH  368 (369)
Q Consensus       314 ---~~~~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~  368 (369)
                         ..+++++.+|+.+.++.. +         .+++|+  +++  +++|||++++|.+
T Consensus       309 ~~~~~~~~~~~vG~~~~~~~~-~---------~~~~k~--~~~--~~~ilG~~~~g~~  352 (367)
T 1xhc_A          309 VFKFGKLQIAIIGNTKGEGKW-I---------EDNTKV--FYE--NGKIIGAVVFNDI  352 (367)
T ss_dssp             EEEETTEEEEEEECCSSCEEE-E---------ETTEEE--EC-------CEEEEESCH
T ss_pred             EEEECCceEEEECCCCCCCcc-c---------ceEEEE--EEE--CCEEEEEEEECCh
Confidence               125677888887665431 1         678997  775  4999999999865

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=5.3e-45  Score=357.61  Aligned_cols=347  Identities=19%  Similarity=0.280  Sum_probs=254.3

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-c--CCcEEEEcCCCCccccccccccccCCccc--ccceecccc-cc--ccceEE-
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTD-YL--VNGRIV-   80 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~--g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~--~~~~~~-   80 (369)
                      ..+++||||||||+||++||.+|+ .  +.+|+|||+++.+++....+.........  ...+..... +.  .++++. 
T Consensus        33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~  112 (588)
T 3ics_A           33 RWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRV  112 (588)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEEC
T ss_pred             cccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEE
Confidence            345689999999999999999986 3  89999999999877654433332222111  111111111 11  145553 


Q ss_pred             Eeeeeeeecc--eEEec---CCe--EEeccEEEEccCCCCCCCCChH----------HHHHHHHHHHHH--HhcCCeEEE
Q 046865           81 ASPAINITEN--EVLTA---EGR--RVVYDYLVIATGHKDPVPKTRT----------ERLNQYQAENQK--IKSARSILI  141 (369)
Q Consensus        81 ~~~~~~~~~~--~v~~~---~g~--~~~~d~lviAtG~~~~~p~~~~----------~~~~~~~~~~~~--~~~~~~v~v  141 (369)
                      ...+..++..  .+.+.   ++.  ++.||+||+|||++|..|+++.          ..+.+.......  ...+++++|
T Consensus       113 ~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvV  192 (588)
T 3ics_A          113 LSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATV  192 (588)
T ss_dssp             SEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEE
T ss_pred             CCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEE
Confidence            4566666643  44442   454  7899999999999876554321          112222222222  246899999


Q ss_pred             EcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcE
Q 046865          142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDT  221 (369)
Q Consensus       142 vG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~  221 (369)
                      ||+|++|+|+|..|..  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+++  .+.+.+|++
T Consensus       193 iGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v~~~~g~~  268 (588)
T 3ics_A          193 IGGGFIGVEMVENLRE--RGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA--VVRLKSGSV  268 (588)
T ss_dssp             ECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT--EEEETTSCE
T ss_pred             ECCCHHHHHHHHHHHh--CCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC--EEEECCCCE
Confidence            9999999999999985  489999999999999999999999999999999999999999998875433  467788889


Q ss_pred             EeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc--------ccchhHHHHHHHHH
Q 046865          222 IKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR--------EIKQGFLAQKHAQV  293 (369)
Q Consensus       222 i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~--------~~~~~~~A~~~g~~  293 (369)
                      +++|.||+|+|++|+++++...++  .++++|+|.||+++|| +.|+|||+|||+..+        .+++++.|..||++
T Consensus       269 i~~D~Vi~a~G~~p~~~~l~~~g~--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  345 (588)
T 3ics_A          269 IQTDMLILAIGVQPESSLAKGAGL--ALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRM  345 (588)
T ss_dssp             EECSEEEECSCEEECCHHHHHTTC--CBCGGGCBCCCTTSBC-SSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHH
T ss_pred             EEcCEEEEccCCCCChHHHHhcCc--eEcCCCCEEECCcccc-CCCCEEEeeeeeecccccCCcccccccHHHHHHHHHH
Confidence            999999999999999988765544  6788999999999998 799999999999532        13578899999999


Q ss_pred             HHHHHHHHhhCCCccc---c-cc-c-cCCCcEEEEeecCCCce--------EEcCcc----cccccccceecccccchHH
Q 046865          294 AAKNLKVLMVGERESK---M-AT-Y-WPHSAIAIVSLGRKDAV--------AQLPFM----TTIGCVPGLIKSRDLFVGK  355 (369)
Q Consensus       294 ~a~~i~~~~~g~~~~~---~-~~-~-~~~~~~~~v~lg~~~~~--------~~~~~~----~~~g~~~~~~k~~~~~~~~  355 (369)
                      +|+||+..   .+...   . .. + ..+|+++.+|+++.++.        ..++..    ...+...+++|+  +++++
T Consensus       346 aa~~i~g~---~~~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~--i~~~~  420 (588)
T 3ics_A          346 LADIIHGH---TDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKL--IFNKD  420 (588)
T ss_dssp             HHHHHTTC---CSSCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEE--EECTT
T ss_pred             HHHHhcCC---CccccCCcccceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEE--EEECC
Confidence            99999831   22110   0 01 0 13588999999876542        222111    134566789998  99999


Q ss_pred             HHHHcCCCCCccC
Q 046865          356 TRKQMGLEPDVAH  368 (369)
Q Consensus       356 ~~~ilG~~~~~~~  368 (369)
                      +++|||+|++|.+
T Consensus       421 ~~~ilG~~~~g~~  433 (588)
T 3ics_A          421 SGKIYGAQTLGRD  433 (588)
T ss_dssp             TCBEEEEEEEESS
T ss_pred             CCeEEEEEEEcCC
Confidence            9999999999975

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=1.2e-45  Score=353.78  Aligned_cols=344  Identities=17%  Similarity=0.225  Sum_probs=248.7

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------c-cccCCcc--------cc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------R-AMVEPSF--------GE   64 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~-~~~~~~~--------~~   64 (369)
                      ++||+|||||++|+++|..|+ .|++|+|||+++.++..+...                  . ......+        ..
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            589999999999999999996 599999999977665432110                  0 0000000        00


Q ss_pred             cceec------------ccccc--ccceEEEeeeeeeecce--EEecCC--eE------EeccEEEEccCCCCC-CCCCh
Q 046865           65 RSVIN------------HTDYL--VNGRIVASPAINITENE--VLTAEG--RR------VVYDYLVIATGHKDP-VPKTR  119 (369)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~--v~~~~g--~~------~~~d~lviAtG~~~~-~p~~~  119 (369)
                      ..+..            ...++  .+++++.+.....+.+.  +.+.+|  ++      +.||+||+|||+.|. +|+.+
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~g~~  164 (478)
T 1v59_A           85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE  164 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCCCCC
Confidence            00000            00111  25778887777666554  444455  46      999999999999864 44432


Q ss_pred             HH--HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEE
Q 046865          120 TE--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVK  197 (369)
Q Consensus       120 ~~--~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~  197 (369)
                      ..  .+.+..+.......+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||+++
T Consensus       165 ~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~  242 (478)
T 1v59_A          165 IDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFK  242 (478)
T ss_dssp             CCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence            11  122222222222357999999999999999999985  48999999999999999999999999999999999999


Q ss_pred             eCceeeeccC--CCCCeEEEcC-----CCcEEeccEEEEcCCCCCCch--hhcccccCCCCCCCCcEEeCCceeeccCCC
Q 046865          198 LGQRVNLDSV--SEGSDTYLTS-----TGDTIKADCHFLCTGKPVGSD--WLKDTILKDSLDTDGMLMVDENLRVKGQKN  268 (369)
Q Consensus       198 ~~~~v~~i~~--~~~~~~v~~~-----~g~~i~~d~vi~a~G~~p~~~--~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~  268 (369)
                      +++.|.+++.  +++.+.+.+.     +++++++|.||+|+|++||++  ++..  +++.++++|+|.||++||| +.|+
T Consensus       243 ~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~--~g~~~~~~G~i~vd~~~~t-~~~~  319 (478)
T 1v59_A          243 LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEK--IGLEVDKRGRLVIDDQFNS-KFPH  319 (478)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTT--TTCCBCTTSCBCCCTTSBC-SSTT
T ss_pred             eCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchh--cCceeCCCCCEeECcCCcc-CCCC
Confidence            9999999875  4444556554     346899999999999999998  4444  4446788899999999997 7999


Q ss_pred             eEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCcc-----ccccccCCCcEEEEeecCCCce--------EEcCc
Q 046865          269 IFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERES-----KMATYWPHSAIAIVSLGRKDAV--------AQLPF  335 (369)
Q Consensus       269 i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~~-----~~~~~~~~~~~~~v~lg~~~~~--------~~~~~  335 (369)
                      |||+|||+..+.  +++.|.+||+++|+||+.    .+..     .+..+..+|+++.+|+++.++.        ..+++
T Consensus       320 IyA~GD~~~~~~--~~~~A~~~g~~aa~~i~~----~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~  393 (478)
T 1v59_A          320 IKVVGDVTFGPM--LAHKAEEEGIAAVEMLKT----GHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPF  393 (478)
T ss_dssp             EEECGGGSSSCC--CHHHHHHHHHHHHHHHHH----SCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEG
T ss_pred             EEEeeccCCCcc--cHHHHHHHHHHHHHHHcC----CCCCCCCCCCCEEEEcCCcEEEEECCHHHHHHcCCCEEEEEEec
Confidence            999999998643  688999999999999984    2211     0111223689999998765442        22222


Q ss_pred             cc-----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          336 MT-----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       336 ~~-----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..     ..+...+++|+  ++++++++|||+|++|.+|
T Consensus       394 ~~~~~~~~~~~~~~~~k~--~~~~~~~~ilG~~~~g~~a  430 (478)
T 1v59_A          394 AANSRAKTNQDTEGFVKI--LIDSKTERILGAHIIGPNA  430 (478)
T ss_dssp             GGCHHHHHTTCCCCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             ccchhhhhcCCCcEEEEE--EEECCCCEEEEEEEECCCH
Confidence            11     33556789998  9998899999999999763

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.3e-45  Score=351.11  Aligned_cols=340  Identities=17%  Similarity=0.218  Sum_probs=249.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------ccc-----cC-----Ccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RAM-----VE-----PSF   62 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~~-----~~-----~~~   62 (369)
                      .++||+|||||+||++||.+|+ .|++|+|||+ +.+|..|...                  ...     ..     ...
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~   82 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRL   82 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCcc
Confidence            3589999999999999999986 4999999999 4454322110                  000     00     000


Q ss_pred             cccceecc------------cccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCC-ChHH-HHHHH
Q 046865           63 GERSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK-TRTE-RLNQY  126 (369)
Q Consensus        63 ~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~-~~~~-~~~~~  126 (369)
                      ....+..+            ..++  .+++++.+++..++.+++.+.+ +++.||+||||||++|..|+ ++.. .+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~~~~v~~~  161 (458)
T 1lvl_A           83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG-QRIQCEHLLLATGSSSVELPMLPLGGPVISS  161 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT-EEEECSEEEECCCEEECCBTTBCCBTTEECH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCccCcEecH
Confidence            11111110            0111  2578888888888888887765 78999999999999987654 3211 12222


Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .+.......+++++|||+|++|+|+|..|++.  +.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++
T Consensus       162 ~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  239 (458)
T 1lvl_A          162 TEALAPKALPQHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYE  239 (458)
T ss_dssp             HHHTCCSSCCSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEE
T ss_pred             HHHhhhhccCCeEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            22222223578999999999999999999854  8999999999999999999999999999999999999999999987


Q ss_pred             CCCCCeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchh
Q 046865          207 VSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG  284 (369)
Q Consensus       207 ~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~  284 (369)
                      . ++ +.+...+|  +++++|.||+|+|++|+++++....+++.++++ +|.||++||| +.|+|||+|||+..+  +++
T Consensus       240 ~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t-~~~~Iya~GD~~~~~--~~~  313 (458)
T 1lvl_A          240 N-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQT-SMHNVWAIGDVAGEP--MLA  313 (458)
T ss_dssp             T-TE-EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBC-SSTTEEECGGGGCSS--CCH
T ss_pred             e-CC-EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcC-CCCCEEEeeccCCCc--ccH
Confidence            6 43 55554456  689999999999999999875334444566666 8999999997 799999999999865  368


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcccccccc-------CCCcEEEEeecCCCc--------eEEcCccc-----ccccccc
Q 046865          285 FLAQKHAQVAAKNLKVLMVGERESKMATYW-------PHSAIAIVSLGRKDA--------VAQLPFMT-----TIGCVPG  344 (369)
Q Consensus       285 ~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~-------~~~~~~~v~lg~~~~--------~~~~~~~~-----~~g~~~~  344 (369)
                      +.|.+||+++|+||.    |.+..  ..|.       .+|+++.+|+.+.++        +..+++..     ..+...+
T Consensus       314 ~~A~~~g~~aa~~i~----g~~~~--~~~~~~p~~~~~~p~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g  387 (458)
T 1lvl_A          314 HRAMAQGEMVAEIIA----GKARR--FEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSG  387 (458)
T ss_dssp             HHHHHHHHHHHHHHT----TCCCC--CCCSCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHhc----CCCcc--CCCCCCCEEEECCCCeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCcE
Confidence            899999999999997    32211  1121       257889999865543        22222211     2355678


Q ss_pred             eecccccchHHHHHHcCCCCCccCC
Q 046865          345 LIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       345 ~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ++|+  ++++++++|||+|++|.+|
T Consensus       388 ~~kl--~~d~~~~~ilG~~~vg~~a  410 (458)
T 1lvl_A          388 FVRV--VARRDNHLILGWQAVGVAV  410 (458)
T ss_dssp             EEEE--EEETTTCBEEEEEEEETTG
T ss_pred             EEEE--EEECCCCEEEEEEEECCCH
Confidence            9998  9998999999999998764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=2.5e-45  Score=349.21  Aligned_cols=346  Identities=20%  Similarity=0.239  Sum_probs=253.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc---------------c------c---CCcccccce
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---------------M------V---EPSFGERSV   67 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~---------------~------~---~~~~~~~~~   67 (369)
                      ++||+|||||+||+++|.+|+ .|++|+|||+++.+|..+.....               .      +   ........+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPAL   80 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHH
Confidence            379999999999999999986 59999999999776643211000               0      0   000000000


Q ss_pred             ecc------------cccc--ccceEEEeeeeeeecceEEec-CCeEEeccEEEEccCCCCCCCCCh---HHHHHHHHHH
Q 046865           68 INH------------TDYL--VNGRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDPVPKTR---TERLNQYQAE  129 (369)
Q Consensus        68 ~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~p~~~---~~~~~~~~~~  129 (369)
                      ..+            ..++  .+++++.+++..++++.+... +++++.||+||+|||++|..|+++   ...+.+..+.
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~~~~  160 (455)
T 2yqu_A           81 MAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEA  160 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCSSSEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCcCcEechHHh
Confidence            000            1111  257888888887777755543 567899999999999987766532   1112222222


Q ss_pred             HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC
Q 046865          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE  209 (369)
Q Consensus       130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  209 (369)
                      ......+++++|||+|++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|.+++.++
T Consensus       161 ~~~~~~~~~vvIiGgG~~g~e~A~~l~~--~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~  238 (455)
T 2yqu_A          161 LSFPEVPKRLIVVGGGVIGLELGVVWHR--LGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA  238 (455)
T ss_dssp             TCCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEET
T ss_pred             hccccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC
Confidence            2222357899999999999999999985  48999999999999999999999999999999999999999999997665


Q ss_pred             CCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHH
Q 046865          210 GSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQK  289 (369)
Q Consensus       210 ~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~  289 (369)
                      +.+.+.+.+|+++++|.||+|+|++|+++++....+++.++++|+|.||+++|+ +.|+|||+|||+..+  ++++.|.+
T Consensus       239 ~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~~--~~~~~A~~  315 (455)
T 2yqu_A          239 KGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRT-RVPHIYAIGDVVRGP--MLAHKASE  315 (455)
T ss_dssp             TEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBC-SSTTEEECGGGSSSC--CCHHHHHH
T ss_pred             CEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCccc-CCCCEEEEecCCCCc--cCHHHHHH
Confidence            566777778889999999999999999987543444556777899999999997 799999999999764  36889999


Q ss_pred             HHHHHHHHHHHHhhCCCccccc---cc--cCCCcEEEEeecCCCce--------EEcCcc-----cccccccceeccccc
Q 046865          290 HAQVAAKNLKVLMVGERESKMA---TY--WPHSAIAIVSLGRKDAV--------AQLPFM-----TTIGCVPGLIKSRDL  351 (369)
Q Consensus       290 ~g~~~a~~i~~~~~g~~~~~~~---~~--~~~~~~~~v~lg~~~~~--------~~~~~~-----~~~g~~~~~~k~~~~  351 (369)
                      ||+++|+||..    ......+   ++  ..+|+++.+|+.+.++.        ..+++.     ...+...+++|+  +
T Consensus       316 ~g~~aa~~i~~----~~~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~  389 (455)
T 2yqu_A          316 EGIAAVEHMVR----GFGHVDYQAIPSVVYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKV--L  389 (455)
T ss_dssp             HHHHHHHHHHH----SCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHHTCCCCEEEE--E
T ss_pred             hHHHHHHHHcC----CCccCCCCCCCEEEEcCCceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhcCCCcEEEEE--E
Confidence            99999999984    2211001   11  12578899998655432        222221     123556789998  8


Q ss_pred             chHHHHHHcCCCCCccCC
Q 046865          352 FVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       352 ~~~~~~~ilG~~~~~~~~  369 (369)
                      +++++++|||++++|.+|
T Consensus       390 ~~~~~~~ilG~~~~g~~a  407 (455)
T 2yqu_A          390 AHAKTDRILGVHGIGARV  407 (455)
T ss_dssp             EETTTCBEEEEEEEETTH
T ss_pred             EECCCCEEEEEEEECCCH
Confidence            988899999999998753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=8.9e-44  Score=337.80  Aligned_cols=342  Identities=20%  Similarity=0.242  Sum_probs=245.2

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccc--ccceecccccc--ccceEE-Eeeee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTDYL--VNGRIV-ASPAI   85 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~-~~~~~   85 (369)
                      +||||||||+||++||..|++   |.+|+|||+++.+++....+.........  ........+++  .+++++ ...+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            489999999999999999864   89999999998766433222211111110  11111111222  256764 44555


Q ss_pred             eee--cceEEecC---Ce--EEeccEEEEccCCCCCCCCChHH---------HHHHHHHHHHHHh--cCCeEEEEcCChh
Q 046865           86 NIT--ENEVLTAE---GR--RVVYDYLVIATGHKDPVPKTRTE---------RLNQYQAENQKIK--SARSILIVGGGPT  147 (369)
Q Consensus        86 ~~~--~~~v~~~~---g~--~~~~d~lviAtG~~~~~p~~~~~---------~~~~~~~~~~~~~--~~~~v~vvG~G~~  147 (369)
                      .++  .+.+.+.+   |+  ++.||+||+|||++|..|+++..         .+.+...+.+...  .+++++|||+|++
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~  160 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYI  160 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHH
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHH
Confidence            664  34565533   54  48999999999999776654311         2233333333344  7899999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccE
Q 046865          148 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADC  226 (369)
Q Consensus       148 g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~  226 (369)
                      |+|+|..+++  .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|.+++.++....+.+ +++++++|.
T Consensus       161 g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~  237 (447)
T 1nhp_A          161 GIEAAEAFAK--AGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADL  237 (447)
T ss_dssp             HHHHHHHHHH--TTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSE
T ss_pred             HHHHHHHHHH--CCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCE
Confidence            9999999985  4899999999999988 68999999999999999999999999999876532224555 456899999


Q ss_pred             EEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHHH
Q 046865          227 HFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKNL  298 (369)
Q Consensus       227 vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~i  298 (369)
                      ||+|+|++|+++++... +  +++++|+|.||++||| +.|+|||+|||+..+.        +++++.|.+||+++|+||
T Consensus       238 vi~a~G~~p~~~~~~~~-~--~~~~~G~i~Vd~~~~t-~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i  313 (447)
T 1nhp_A          238 VVVAVGVRPNTAWLKGT-L--ELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL  313 (447)
T ss_dssp             EEECSCEEESCGGGTTT-S--CBCTTSCBCCCTTCBC-SSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTS
T ss_pred             EEECcCCCCChHHHHhh-h--hhcCCCcEEECccccC-CCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhh
Confidence            99999999999887654 3  6778899999999998 7999999999997532        246789999999999999


Q ss_pred             HHHhhCCCccc----cccc--cCCCcEEEEeecCCCce--------EEcCc---ccc-cccccceecccccchHHHHHHc
Q 046865          299 KVLMVGERESK----MATY--WPHSAIAIVSLGRKDAV--------AQLPF---MTT-IGCVPGLIKSRDLFVGKTRKQM  360 (369)
Q Consensus       299 ~~~~~g~~~~~----~~~~--~~~~~~~~v~lg~~~~~--------~~~~~---~~~-~g~~~~~~k~~~~~~~~~~~il  360 (369)
                      .    |.+...    ..++  ..+++++.+|+...++.        ..+..   ... .+...+++|+  ++++++++||
T Consensus       314 ~----g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~~~~il  387 (447)
T 1nhp_A          314 E----EPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKL--VYDPETTQIL  387 (447)
T ss_dssp             S----SCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEE--EECTTTCBEE
T ss_pred             c----CCCCCCCCccccEEEEECCeeeEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEEE--EEECCCCEEE
Confidence            7    432111    0111  12467888888655432        11111   011 2455689998  9998899999


Q ss_pred             CCCCCccC
Q 046865          361 GLEPDVAH  368 (369)
Q Consensus       361 G~~~~~~~  368 (369)
                      |+|++|.+
T Consensus       388 G~~~~g~~  395 (447)
T 1nhp_A          388 GAQLMSKA  395 (447)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEcCc
Confidence            99999987

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=8.4e-44  Score=340.60  Aligned_cols=343  Identities=18%  Similarity=0.264  Sum_probs=247.1

Q ss_pred             cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccc-ccc-eecccccc---ccceEEE-ee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG-ERS-VINHTDYL---VNGRIVA-SP   83 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~---~~~~~~~-~~   83 (369)
                      ++||||||||+||++||..|++   +.+|+|||+++.+++....+......... ... .....+.+   .+++++. ..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~  115 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE  115 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence            4799999999999999999864   89999999998765433222222111111 111 11111111   2567765 46


Q ss_pred             eeeeec--ceEEec---CCe--EEeccEEEEccCCCCCCCCChHH---------HHHHHHHHHHHHh--cCCeEEEEcCC
Q 046865           84 AINITE--NEVLTA---EGR--RVVYDYLVIATGHKDPVPKTRTE---------RLNQYQAENQKIK--SARSILIVGGG  145 (369)
Q Consensus        84 ~~~~~~--~~v~~~---~g~--~~~~d~lviAtG~~~~~p~~~~~---------~~~~~~~~~~~~~--~~~~v~vvG~G  145 (369)
                      +..++.  +.+.+.   +|+  ++.||+||+|||++|..|+++..         ...+...+.+...  .+++++|||+|
T Consensus       116 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG  195 (480)
T 3cgb_A          116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGG  195 (480)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCH
T ss_pred             EEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCC
Confidence            666763  455543   365  79999999999999776654311         1233333333333  78999999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEecc
Q 046865          146 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKAD  225 (369)
Q Consensus       146 ~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d  225 (369)
                      ++|+|+|..|.+  .+.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|.+++.+++...+.++ +.++++|
T Consensus       196 ~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D  272 (480)
T 3cgb_A          196 AIGLEMAETFVE--LGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKAD  272 (480)
T ss_dssp             HHHHHHHHHHHH--TTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECS
T ss_pred             HHHHHHHHHHHh--cCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcC
Confidence            999999999985  4899999999999999999999999999999999999999999988754322234444 4589999


Q ss_pred             EEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--------cchhHHHHHHHHHHHHH
Q 046865          226 CHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--------IKQGFLAQKHAQVAAKN  297 (369)
Q Consensus       226 ~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--------~~~~~~A~~~g~~~a~~  297 (369)
                      .||+|+|++|+++++...++  +++++|+|.||+++|| +.|+|||+|||+..+.        +++++.|..||+++|+|
T Consensus       273 ~vi~a~G~~p~~~~l~~~g~--~~~~~G~I~Vd~~~~t-s~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~  349 (480)
T 3cgb_A          273 LVLVSVGVKPNTDFLEGTNI--RTNHKGAIEVNAYMQT-NVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLN  349 (480)
T ss_dssp             EEEECSCEEESCGGGTTSCC--CBCTTSCBCCCTTSBC-SSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHH
T ss_pred             EEEECcCCCcChHHHHhCCc--ccCCCCCEEECCCccC-CCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHH
Confidence            99999999999988766544  6778899999999998 7999999999996532        24678999999999999


Q ss_pred             HHHHhhCCCccccccc-------cCCCcEEEEeecCCCce--------EEcCcc----cccccccceecccccchHHHHH
Q 046865          298 LKVLMVGERESKMATY-------WPHSAIAIVSLGRKDAV--------AQLPFM----TTIGCVPGLIKSRDLFVGKTRK  358 (369)
Q Consensus       298 i~~~~~g~~~~~~~~~-------~~~~~~~~v~lg~~~~~--------~~~~~~----~~~g~~~~~~k~~~~~~~~~~~  358 (369)
                      |.    |.... ...+       ..+++++.+|+.+.++.        ..+...    ...+...+++|+  ++++++++
T Consensus       350 i~----g~~~~-~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl--~~~~~~~~  422 (480)
T 3cgb_A          350 ML----DKRRA-FKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPLYLKL--LYRSDTKQ  422 (480)
T ss_dssp             HT----TCCCC-CCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEE--EEETTTCB
T ss_pred             hc----CCCcc-CCCccceeEEEECCcEEEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceEEEEE--EEECCCCE
Confidence            97    33211 1111       12578888888755432        111111    112445688998  99989999


Q ss_pred             HcCCCCCccC
Q 046865          359 QMGLEPDVAH  368 (369)
Q Consensus       359 ilG~~~~~~~  368 (369)
                      |||+|++|.+
T Consensus       423 ilG~~~vg~~  432 (480)
T 3cgb_A          423 LLGGQVIGEE  432 (480)
T ss_dssp             EEEEEEEESS
T ss_pred             EEEEEEECCc
Confidence            9999999876

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=4.3e-43  Score=326.75  Aligned_cols=338  Identities=18%  Similarity=0.211  Sum_probs=241.1

Q ss_pred             cceEEEECCChHHHHHHHHccc-C--CcEEEEcCCCCccccccccccccCCccc-ccceec-ccccc--ccceEEE-eee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVIN-HTDYL--VNGRIVA-SPA   84 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g--~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~~~-~~~   84 (369)
                      ++||+|||||+||++||..|++ |  .+|+|||+++...+....+......... ...... ...++  .+++++. ..+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            5899999999999999999974 5  6799999986433221222222111111 111111 11221  2567764 456


Q ss_pred             eeeec--ceEEecCCeEEeccEEEEccCCCCCCCCChH---------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865           85 INITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------ERLNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (369)
Q Consensus        85 ~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~  153 (369)
                      ..++.  +++.+. +.++.||+||+|||+.|..|+++.         ..+.++.........+++++|+|+|++|+|+|.
T Consensus        84 ~~i~~~~~~v~~~-~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~  162 (384)
T 2v3a_A           84 TGIDPGHQRIWIG-EEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFAN  162 (384)
T ss_dssp             CEEEGGGTEEEET-TEEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHH
T ss_pred             EEEECCCCEEEEC-CcEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHH
Confidence            77765  567765 457999999999999977665431         123344444445566899999999999999999


Q ss_pred             HHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865          154 EIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       154 ~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G  232 (369)
                      .|.+  .+.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|.+++.+++.+.+++.+|+++++|.||+|+|
T Consensus       163 ~l~~--~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G  240 (384)
T 2v3a_A          163 DLSS--GGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVG  240 (384)
T ss_dssp             HHHH--TTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred             HHHh--CCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcC
Confidence            9985  48999999999998886 48889999999999999999999999998766566778888898999999999999


Q ss_pred             CCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--cchhHHHHHHHHHHHHHHHHHhhCCCccc-
Q 046865          233 KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--IKQGFLAQKHAQVAAKNLKVLMVGERESK-  309 (369)
Q Consensus       233 ~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~~~~~~A~~~g~~~a~~i~~~~~g~~~~~-  309 (369)
                      ++|+++++...++  .++ +| |.||+++|| +.|+|||+|||+..+.  ....+.|.+||+++|+||+    |.+... 
T Consensus       241 ~~p~~~l~~~~g~--~~~-~g-i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~----g~~~~~~  311 (384)
T 2v3a_A          241 LRPRTELAFAAGL--AVN-RG-IVVDRSLRT-SHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLA----GNPSQVA  311 (384)
T ss_dssp             EEECCHHHHHTTC--CBS-SS-EEECTTCBC-SSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHT----TCCCCCC
T ss_pred             CCcCHHHHHHCCC--CCC-CC-EEECCCCCC-CCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhc----CCCccCC
Confidence            9999987765554  555 57 999999997 7999999999985322  2345678999999999997    432110 


Q ss_pred             --c---ccccCCCcEEEEeecCCCceEEcCcccccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          310 --M---ATYWPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       310 --~---~~~~~~~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                        .   ..|.+...+..+|+.....    ..+...+...++.|+  +++ ++++|||++++|.||
T Consensus       312 ~~~~p~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~g~~~~--~~~-~~~~i~G~~~~g~~a  369 (384)
T 2v3a_A          312 YGPMPVTVKTPACPLVVSPPPRGMD----GQWLVEGSGTDLKVL--CRD-TAGRVIGYALTGAAV  369 (384)
T ss_dssp             CCCCCEEECCTTSCEEEECCCTTCC----CEEEEEEETTEEEEE--EEC-TTSCEEEEEEEGGGG
T ss_pred             CCCcceEEEECCeeEEEecCCCCCC----ceEEEEecCCcEEEE--EEc-cCCEEEEEEEECcch
Confidence              0   1123334555555432211    111223445678885  555 679999999999875

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=9.9e-44  Score=329.96  Aligned_cols=326  Identities=21%  Similarity=0.271  Sum_probs=239.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCccc-ccceecccccc--ccceEEEe-eee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVINHTDYL--VNGRIVAS-PAI   85 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~   85 (369)
                      .++++|||||||+||++||..|. .+.+|+|||+++++++....+...+..... ........+++  .+++++.+ +++
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~   86 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFAT   86 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEE
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEE
Confidence            45789999999999999999995 489999999999877654444433322222 12222233333  26777755 678


Q ss_pred             eeec--ceEEecCCeEEeccEEEEccCCCCCCCCChH-------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHh
Q 046865           86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA  156 (369)
Q Consensus        86 ~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~  156 (369)
                      .+|.  ++|.+.+|+++.||+||+|||++|..|+++.       ..+.+..........+++++|||+|++|+|+|..|.
T Consensus        87 ~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~  166 (385)
T 3klj_A           87 SIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAII  166 (385)
T ss_dssp             EEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHH
T ss_pred             EEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence            8875  4788889999999999999999977665432       123344444444556799999999999999999998


Q ss_pred             hhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          157 VDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       157 ~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      +.  +.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+.++             |+++++|.||+|+|++|
T Consensus       167 ~~--g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~~p  231 (385)
T 3klj_A          167 DS--GTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKP  231 (385)
T ss_dssp             HH--TCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------HHHHHHSEEEECCCEEE
T ss_pred             hC--CCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------CeEEecCeEEECcCccc
Confidence            64  8999999999999986 89999999999999999999999988765             56799999999999999


Q ss_pred             CchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--cchhHHHHHHHHHHHHHHHHHhhCCCcc--c--
Q 046865          236 GSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--IKQGFLAQKHAQVAAKNLKVLMVGERES--K--  309 (369)
Q Consensus       236 ~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~~~~~~A~~~g~~~a~~i~~~~~g~~~~--~--  309 (369)
                      +++++...++  ..+ +| |.||++||| +.|+|||+|||+..+.  +++.+.|..||++||+||+    |....  .  
T Consensus       232 ~~~~~~~~gl--~~~-~g-i~vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~----g~~~~~~~~~  302 (385)
T 3klj_A          232 NLDFIKDTEI--ASK-RG-ILVNDHMET-SIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNAC----GEDASYSEII  302 (385)
T ss_dssp             CCGGGTTSCC--CBS-SS-EEECTTCBC-SSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHT----TCCCCCCCCC
T ss_pred             ChhhhhhcCC--CcC-CC-EEECCCccc-CCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhc----CCCcCCCCCC
Confidence            9999877655  443 45 999999998 7999999999997542  3567899999999999998    43211  1  


Q ss_pred             ccccc--CCCcEEEEeecCCCceEEcCcccccccccceecccccchHHHHHHcCCCCCcc
Q 046865          310 MATYW--PHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVA  367 (369)
Q Consensus       310 ~~~~~--~~~~~~~v~lg~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~  367 (369)
                      +..+.  .+++++.+|+...+.-...   ........|.|+  ++  +.++++|++++|.
T Consensus       303 ~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~~~~~~~--~~--~~~~l~g~~~~g~  355 (385)
T 3klj_A          303 PSPILKVSGISIISCGDIENNKPSKV---FRSTQEDKYIVC--ML--KENKIDAAAVIGD  355 (385)
T ss_dssp             CCCEEEETTEEEEEESCCTTCCCSEE---EEEECSSCEEEE--EE--ETTEEEEEEEESC
T ss_pred             CcEEEEeCCCcEEEEcCCCCCCCeEE---EEECCCCeEEEE--EE--ECCEEEEEEEECC
Confidence            11111  1355666666543311000   012223467775  55  3489999988874

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=6.7e-43  Score=327.95  Aligned_cols=280  Identities=24%  Similarity=0.332  Sum_probs=219.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCc--EEEEcCCCCcccccccccc-ccCCcccccceecccccc--ccceEEEe-eee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSAD--VTLIDPKEYFEITWASLRA-MVEPSFGERSVINHTDYL--VNGRIVAS-PAI   85 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~--V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~   85 (369)
                      +++|||||||+||++||..|+ .|.+  |+|||+++++.+....+.. +..............+++  .+++++.+ ++.
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEE
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEE
Confidence            469999999999999999997 4666  9999999987765333332 211111111112222222  26788877 788


Q ss_pred             eeecc--eEEecCCeEEeccEEEEccCCCCCCCCChH---------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHH
Q 046865           86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (369)
Q Consensus        86 ~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~  154 (369)
                      .++..  ++.+.+++++.||+||+|||+.|..|+++.         ....+..........+++++|+|+|++|+|+|..
T Consensus        82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~  161 (410)
T 3ef6_A           82 ALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATT  161 (410)
T ss_dssp             EEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHH
T ss_pred             EEECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHH
Confidence            88754  788888889999999999999977654331         1233444444455668999999999999999999


Q ss_pred             HhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          155 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       155 l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      +.+  .+.+|+++++.+++++ .+++++.+.+.+.++++||++++++.|.+++.++....+++.+|+++++|.||+|+|+
T Consensus       162 l~~--~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~  239 (410)
T 3ef6_A          162 ARK--LGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGA  239 (410)
T ss_dssp             HHH--TTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred             HHh--CCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence            985  4899999999999887 4788999999999999999999999999988665555788899999999999999999


Q ss_pred             CCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc-------chhHHHHHHHHHHHHHHH
Q 046865          234 PVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI-------KQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       234 ~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~-------~~~~~A~~~g~~~a~~i~  299 (369)
                      +|+++++...++  ..+ +| |.||+++|| +.|+|||+|||+..+.+       ++.+.|..||+++|+||+
T Consensus       240 ~p~~~l~~~~gl--~~~-~g-i~vd~~~~t-~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  307 (410)
T 3ef6_A          240 EPADQLARQAGL--ACD-RG-VIVDHCGAT-LAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAIL  307 (410)
T ss_dssp             EECCHHHHHTTC--CBS-SS-EECCTTSBC-SSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHT
T ss_pred             eecHHHHHhCCC--ccC-Ce-EEEccCeeE-CCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHc
Confidence            999998876665  444 44 999999998 79999999999976542       346899999999999998

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=9.2e-43  Score=326.69  Aligned_cols=333  Identities=21%  Similarity=0.233  Sum_probs=238.6

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CC--cEEEEcCCCCcccccccccc-ccCCcccccceecccccc--ccceEEEee-e
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEYFEITWASLRA-MVEPSFGERSVINHTDYL--VNGRIVASP-A   84 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~--~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~   84 (369)
                      +++||+|||||++|+++|..|++ |.  +|+|||+++.+.+....+.. +............   ++  .+++++.+. +
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~v   82 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD---CKRAPEVEWLLGVTA   82 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCC---CTTSCSCEEEETCCE
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHH---HHHHCCCEEEcCCEE
Confidence            46899999999999999999974 65  69999999876543222211 1111111111111   22  257887775 7


Q ss_pred             eeeec--ceEEecCCeEEeccEEEEccCCCCCCCCC-hH--H------HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865           85 INITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKT-RT--E------RLNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (369)
Q Consensus        85 ~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~-~~--~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~  153 (369)
                      ..++.  ++|.+.+++++.||+||+|||++|..|++ +.  .      ...+...+......+++++|||+|++|+|+|.
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~  162 (408)
T 2gqw_A           83 QSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAA  162 (408)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHH
T ss_pred             EEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence            88875  47888888899999999999999776554 32  1      22333333333345899999999999999999


Q ss_pred             HHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865          154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       154 ~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G  232 (369)
                      .|.+  .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|.+++ + +  .+++.+|+++++|.||+|+|
T Consensus       163 ~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G  236 (408)
T 2gqw_A          163 TART--AGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIG  236 (408)
T ss_dssp             HHHH--TTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T-T--EEEETTSCEEECSEEEECSC
T ss_pred             HHHh--CCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcC
Confidence            9985  4899999999999998 4899999999999999999999999999987 3 3  67788899999999999999


Q ss_pred             CCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc--------chhHHHHHHHHHHHHHHHHHhhC
Q 046865          233 KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI--------KQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       233 ~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~--------~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ++|+++++...++  .++ +| |.||+++|| +.|+|||+|||+..+.+        .+.+.|.+||+++|+||.....-
T Consensus       237 ~~p~~~l~~~~gl--~~~-~g-i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~  311 (408)
T 2gqw_A          237 VLANDALARAAGL--ACD-DG-IFVDAYGRT-TCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAP  311 (408)
T ss_dssp             EEECCHHHHHHTC--CBS-SS-EECCTTCBC-SSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTSC
T ss_pred             CCccHHHHHhCCC--CCC-CC-EEECCCCcc-CCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCCC
Confidence            9999998876655  444 45 999999998 79999999999987542        24678999999999999832110


Q ss_pred             CCcccccccc--CCCcEEEEeecCCCceEEcCccccccc----ccceecccccchHHHHHHcCCCCCccC
Q 046865          305 ERESKMATYW--PHSAIAIVSLGRKDAVAQLPFMTTIGC----VPGLIKSRDLFVGKTRKQMGLEPDVAH  368 (369)
Q Consensus       305 ~~~~~~~~~~--~~~~~~~v~lg~~~~~~~~~~~~~~g~----~~~~~k~~~~~~~~~~~ilG~~~~~~~  368 (369)
                      .....+..|.  .+++++++|+ ......     ...+.    ..++.|+  + .+ +++++|++++|.+
T Consensus       312 ~~~~~p~~~~~~~~~~~~~~G~-~~~~~~-----~~~~~~~~~~~~~~~~--~-~~-~~~l~G~~~~g~~  371 (408)
T 2gqw_A          312 GYAELPWYWSDQGALRIQVAGL-ASGDEE-----IVRGEVSLDAPKFTLI--E-LQ-KGRIVGATCVNNA  371 (408)
T ss_dssp             CCCCCCEEEEEETTEEEEEEEC-SCCSEE-----EEESCCCSSSCCEEEE--E-EE-TTEEEEEEEESCH
T ss_pred             cCCCCCeEEEEECCceEEEECC-CCCCEE-----EEEccCCCCCCeEEEE--E-Ee-CCEEEEEEEECCh
Confidence            0000011111  1256667776 222211     11222    3456664  4 33 6899999998853

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=8.9e-43  Score=342.35  Aligned_cols=351  Identities=15%  Similarity=0.146  Sum_probs=244.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCC-C-------Cccccccc--------cc-------------cc---
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK-E-------YFEITWAS--------LR-------------AM---   57 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~-~-------~~~~~~~~--------~~-------------~~---   57 (369)
                      ..++||+|||||+||++||..|+ .|++|+|||+. +       .+|..+..        +.             .+   
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~  184 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS  184 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence            45689999999999999999986 59999999973 2       13321100        00             00   


Q ss_pred             cCC---cccccceeccc------------cc--cccceEEEeeeeeeecceEEe--cCC--eEEeccEEEEccCCCCCCC
Q 046865           58 VEP---SFGERSVINHT------------DY--LVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPVP  116 (369)
Q Consensus        58 ~~~---~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lviAtG~~~~~p  116 (369)
                      ...   ......+..+.            ..  ..+++++.+.+.+++...+..  .+|  .++.||+||||||++|..|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~p  264 (598)
T 2x8g_A          185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP  264 (598)
T ss_dssp             CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECCC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCCC
Confidence            000   00000000000            00  125778888888888775543  455  4799999999999998887


Q ss_pred             CChHHHH--HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCc
Q 046865          117 KTRTERL--NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       117 ~~~~~~~--~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv  194 (369)
                      +++....  .+..........+++++|||+|++|+|+|..|++  .+.+|+++++. .+++.+++++.+.+.+.+++.||
T Consensus       265 ~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv  341 (598)
T 2x8g_A          265 EIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLAS--LGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENHGV  341 (598)
T ss_dssp             SSTTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhCCC
Confidence            7653211  1111222222457899999999999999999985  48999999998 78888999999999999999999


Q ss_pred             EEEeCceeeeccC------CC---CCeEE--EcCCCcEEe--ccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCce
Q 046865          195 DVKLGQRVNLDSV------SE---GSDTY--LTSTGDTIK--ADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENL  261 (369)
Q Consensus       195 ~i~~~~~v~~i~~------~~---~~~~v--~~~~g~~i~--~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l  261 (369)
                      ++++++.+.+++.      ++   +.+.+  .+.+|++++  +|.||+|+|++||++++.....+++++++|+|.||+++
T Consensus       342 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~  421 (598)
T 2x8g_A          342 KFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDE  421 (598)
T ss_dssp             EEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTS
T ss_pred             EEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCC
Confidence            9999987776632      11   33333  346776655  99999999999999987545555678889999999999


Q ss_pred             eeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCCc---cccccccCCCcEEEEeecCCCceEEc-----
Q 046865          262 RVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERE---SKMATYWPHSAIAIVSLGRKDAVAQL-----  333 (369)
Q Consensus       262 ~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~~---~~~~~~~~~~~~~~v~lg~~~~~~~~-----  333 (369)
                      || +.|+|||+|||+.. .+++++.|.+||+++|.||+........   .+...| ..|+++.+|+++.++....     
T Consensus       422 ~t-s~~~VyA~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~-~~~~~a~vGl~e~~a~~~~~~~~~  498 (598)
T 2x8g_A          422 QT-TVSNVYAIGDINAG-KPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVF-TPLEYGACGLSEEDAIEKYGDKDI  498 (598)
T ss_dssp             BC-SSTTEEECGGGBTT-SCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEEC-SSSCEEEEECCHHHHHHHHCGGGE
T ss_pred             cC-CCCCEEEEeeecCC-CCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEE-CCCceEEEeCCHHHHHhhCCCCcE
Confidence            97 79999999999543 2346889999999999999842110000   011122 3689999999876654221     


Q ss_pred             -----Cccc----cc--ccccceecccccchH-HHHHHcCCCCCccCC
Q 046865          334 -----PFMT----TI--GCVPGLIKSRDLFVG-KTRKQMGLEPDVAHA  369 (369)
Q Consensus       334 -----~~~~----~~--g~~~~~~k~~~~~~~-~~~~ilG~~~~~~~~  369 (369)
                           ++..    ..  +...+++|+  ++++ ++++|||+|++|.||
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~kl--i~~~~~~~~ilG~~~~g~~a  544 (598)
T 2x8g_A          499 EVYHSNFKPLEWTVAHREDNVCYMKL--VCRKSDNMRVLGLHVLGPNA  544 (598)
T ss_dssp             EEEEEEECCTHHHHTTCCSSCEEEEE--EEETTTTTEEEEEEEESTTH
T ss_pred             EEEEEeccchhHHhhcCCCCcEEEEE--EEecCCCCEEEEEEEECCCH
Confidence                 1111    11  235689998  8885 689999999999764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=2.5e-41  Score=319.04  Aligned_cols=315  Identities=23%  Similarity=0.227  Sum_probs=221.6

Q ss_pred             cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcccccceeccccccc--cceEEEeeeeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLV--NGRIVASPAINI   87 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (369)
                      .++|||||||+||++||++|++   +.+|+|||+++++.+.+.............+...+..+++.  +++|++++++.+
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~I   81 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESI   81 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEE
Confidence            4689999999999999999963   58999999999887653322111111111223334444443  689999999999


Q ss_pred             ec--ceEEecCCeEEeccEEEEccCCCC--CCCCChH--------HHHHHHHHHHHHHhcCCeEEEEcCCh------hHH
Q 046865           88 TE--NEVLTAEGRRVVYDYLVIATGHKD--PVPKTRT--------ERLNQYQAENQKIKSARSILIVGGGP------TGV  149 (369)
Q Consensus        88 ~~--~~v~~~~g~~~~~d~lviAtG~~~--~~p~~~~--------~~~~~~~~~~~~~~~~~~v~vvG~G~------~g~  149 (369)
                      |+  ++|.+.+|+++.||+||||||+++  .+|+...        +......+..........++|+|+++      .+.
T Consensus        82 d~~~~~V~~~~g~~i~YD~LViAtG~~~~~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~  161 (430)
T 3hyw_A           82 DPDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAY  161 (430)
T ss_dssp             ETTTTEEEETTCCEEECSEEEECCCCEEECCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHH
T ss_pred             ECCCCEEEECCCCEEECCEEEEeCCCCccCCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHH
Confidence            85  489999999999999999999984  3454321        11122222223333344555666543      234


Q ss_pred             HHHHHHh----hhC--CCCeEEEEEcCccccc---cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC-
Q 046865          150 ELAGEIA----VDF--PEKKVTLVHKGSRLLE---FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG-  219 (369)
Q Consensus       150 e~a~~l~----~~~--~~~~v~lv~~~~~~l~---~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-  219 (369)
                      |++..+.    ++.  ...+|++++..+.+.+   ...+...+.+++.++++||++++++.|++++.  +.+.+...+| 
T Consensus       162 e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~~~~~~~~~g~  239 (430)
T 3hyw_A          162 EFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP--DKVIYEDLNGN  239 (430)
T ss_dssp             HHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS--SEEEEECTTSC
T ss_pred             HHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC--CceEEEeeCCC
Confidence            4444332    211  1457899988775533   45567788899999999999999999998863  3455555444 


Q ss_pred             -cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc----------ccchhHHHH
Q 046865          220 -DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR----------EIKQGFLAQ  288 (369)
Q Consensus       220 -~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~----------~~~~~~~A~  288 (369)
                       +++++|+++|++|.+|+ +++...+..+..+.+|+|.||++||++++|||||+|||+..|          .+++++.|.
T Consensus       240 ~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~  318 (430)
T 3hyw_A          240 THEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIE  318 (430)
T ss_dssp             EEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHH
T ss_pred             ceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHH
Confidence             47999999999999986 555555544455667889999999977999999999999865          357889999


Q ss_pred             HHHHHHHHHHHHHhhCCCccccccccCCCcEEEEeecCCCceEEc
Q 046865          289 KHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLGRKDAVAQL  333 (369)
Q Consensus       289 ~~g~~~a~~i~~~~~g~~~~~~~~~~~~~~~~~v~lg~~~~~~~~  333 (369)
                      +||+++|+||++.++|++.. .++  .....+++.+|...++...
T Consensus       319 ~qg~~~A~Ni~~~l~g~~~~-~~~--~~~~~~~~~~G~~~~~~~~  360 (430)
T 3hyw_A          319 QMAMAVAHNIVNDIRNNPDK-YAP--RLSAICIADFGEDAGFFFA  360 (430)
T ss_dssp             HHHHHHHHHHHHHHTTCCCC-EEE--CCCEEEEEECSSSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCC-ccc--CCcEEEEEEcCCCcEEEEE
Confidence            99999999999999987532 111  1245678889988887643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=1.3e-41  Score=320.87  Aligned_cols=337  Identities=20%  Similarity=0.270  Sum_probs=236.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCCCcccccccccc-ccCCccc-ccceecccccc--ccceEEEe-e
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEYFEITWASLRA-MVEPSFG-ERSVINHTDYL--VNGRIVAS-P   83 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~   83 (369)
                      +++||||||||++|+++|..|+ .|.  +|+|||+++.+.+....+.. +...... ........+++  .+++++.+ .
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   82 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   82 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCE
Confidence            3589999999999999999997 466  79999998775543222211 1111111 11111111222  25677665 4


Q ss_pred             eeeeec--ceEEecCCeEEeccEEEEccCCCCCCCCChH---HH---------HHHHHHHHHHHhcCCeEEEEcCChhHH
Q 046865           84 AINITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---ER---------LNQYQAENQKIKSARSILIVGGGPTGV  149 (369)
Q Consensus        84 ~~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---~~---------~~~~~~~~~~~~~~~~v~vvG~G~~g~  149 (369)
                      +..++.  +.|.+.+++++.||+||+|||+.|..|+++.   ..         ..++..+......+++++|||+|++|+
T Consensus        83 v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~  162 (431)
T 1q1r_A           83 VTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGL  162 (431)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHH
T ss_pred             EEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHH
Confidence            677764  4788888889999999999999987766432   22         122222333334689999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCcEEEeCceeeeccC--CCCCe-EEEcCCCcEEecc
Q 046865          150 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKVDVKLGQRVNLDSV--SEGSD-TYLTSTGDTIKAD  225 (369)
Q Consensus       150 e~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~~~-~v~~~~g~~i~~d  225 (369)
                      |+|..|.+  .+.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|.+++.  +++.+ .+.+.+|+++++|
T Consensus       163 E~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D  240 (431)
T 1q1r_A          163 EVAATAIK--ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPAD  240 (431)
T ss_dssp             HHHHHHHH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECS
T ss_pred             HHHHHHHh--CCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcC
Confidence            99999985  48999999999998885 8899999999999999999999999998875  33444 6778889999999


Q ss_pred             EEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc--------hhHHHHHHHHHHHHH
Q 046865          226 CHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK--------QGFLAQKHAQVAAKN  297 (369)
Q Consensus       226 ~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~--------~~~~A~~~g~~~a~~  297 (369)
                      .||+|+|++|+++++...++  .++ +| |.||+++|| +.|+|||+|||+..+.+.        ..+.|..||+++|+|
T Consensus       241 ~Vv~a~G~~p~~~l~~~~gl--~~~-~g-i~Vd~~~~t-s~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~  315 (431)
T 1q1r_A          241 LVIAGIGLIPNCELASAAGL--QVD-NG-IVINEHMQT-SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI  315 (431)
T ss_dssp             EEEECCCEEECCHHHHHTTC--CBS-SS-EECCTTSBC-SSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcCcchhhccCC--CCC-CC-EEECCCccc-CCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHH
Confidence            99999999999998876655  444 45 999999998 799999999999875432        457899999999999


Q ss_pred             HHHHhhCCCcc---ccccccC--CCcEEEEeecCCCceEEcCcccccccc--cceecccccchHHHHHHcCCCCCccC
Q 046865          298 LKVLMVGERES---KMATYWP--HSAIAIVSLGRKDAVAQLPFMTTIGCV--PGLIKSRDLFVGKTRKQMGLEPDVAH  368 (369)
Q Consensus       298 i~~~~~g~~~~---~~~~~~~--~~~~~~v~lg~~~~~~~~~~~~~~g~~--~~~~k~~~~~~~~~~~ilG~~~~~~~  368 (369)
                      |+    |....   .+..|..  +..+.++|+.......     ...+..  ..+++   ++ .++++++|++++|.+
T Consensus       316 i~----g~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~-----~~~~~~~~~~~~~---~~-~~~~~l~G~~~~g~~  380 (431)
T 1q1r_A          316 LC----GKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRI-----IVRGSLAQPDFSV---FY-LQGDRVLAVDTVNRP  380 (431)
T ss_dssp             HT----TCCCCCCCCCEEEEEETTEEEEEEECCTTCSEE-----EEEEETTTTEEEE---EE-EETTEEEEEEEESCH
T ss_pred             hc----CCCCCCCCCCeEEEEECCceEEEEeCCCCCCEE-----EEEccCCCCeEEE---EE-EeCCEEEEEEEECCh
Confidence            97    43210   0111211  2344555554322111     112221  23444   33 346899999998753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=4.6e-40  Score=309.43  Aligned_cols=281  Identities=20%  Similarity=0.211  Sum_probs=220.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCc--EEEEcCCCCccccccccc-cccCCccc-ccceecccccc--ccceEEEe-e
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD--VTLIDPKEYFEITWASLR-AMVEPSFG-ERSVINHTDYL--VNGRIVAS-P   83 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~--V~lie~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~   83 (369)
                      +++||||||||+||++||.+|+ .|.+  |+|||+++++.+....+. .+...... .........++  .+++++.+ +
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   87 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE   87 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence            4689999999999999999997 4665  999999988766543333 22221111 11112222222  25777776 7


Q ss_pred             eeeeecc--eEEecCCeEEeccEEEEccCCCCCCCCChH---------HHHHHHHHHHHHHhc-CCeEEEEcCChhHHHH
Q 046865           84 AINITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------ERLNQYQAENQKIKS-ARSILIVGGGPTGVEL  151 (369)
Q Consensus        84 ~~~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~-~~~v~vvG~G~~g~e~  151 (369)
                      +..++..  .+.+.+++.+.||+||+|||+.|..|+++.         ....+.......... +++++|+|+|++|+|+
T Consensus        88 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~  167 (415)
T 3lxd_A           88 VVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEA  167 (415)
T ss_dssp             EEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHH
T ss_pred             EEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHH
Confidence            8888754  788888899999999999999977664321         123444444444555 8999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEE
Q 046865          152 AGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFL  229 (369)
Q Consensus       152 a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~  229 (369)
                      |..+.+  .+.+|+++++.+++++ .+++++.+.+.+.++++||++++++.|.+++.+++.+ .+++.+|+++++|.||+
T Consensus       168 A~~l~~--~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~  245 (415)
T 3lxd_A          168 AAVLTK--FGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIV  245 (415)
T ss_dssp             HHHHHH--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHh--cCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEE
Confidence            999985  4899999999999988 4788999999999999999999999999987655544 67889999999999999


Q ss_pred             cCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc---------hhHHHHHHHHHHHHHHH
Q 046865          230 CTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK---------QGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       230 a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~---------~~~~A~~~g~~~a~~i~  299 (369)
                      |+|++|+++++...++  ..+ +| |.||+++|| +.|+|||+|||+..+.+.         +.+.|..||+++|+||+
T Consensus       246 a~G~~p~~~l~~~~gl--~~~-~g-i~vd~~~~t-~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  319 (415)
T 3lxd_A          246 GIGIVPCVGALISAGA--SGG-NG-VDVDEFCRT-SLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDIC  319 (415)
T ss_dssp             CSCCEESCHHHHHTTC--CCS-SS-EECCTTCBC-SSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHT
T ss_pred             CCCCccChHHHHhCCC--CcC-CC-EEECCCCCc-CCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhc
Confidence            9999999998876655  444 45 999999998 799999999999876533         25789999999999998

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.4e-39  Score=305.08  Aligned_cols=280  Identities=20%  Similarity=0.312  Sum_probs=218.9

Q ss_pred             cceEEEECCChHHHHHHHHccc-CC--cEEEEcCCCCccccccccc-cccCCccc-ccceecccccc--ccceEEEeeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEYFEITWASLR-AMVEPSFG-ERSVINHTDYL--VNGRIVASPAI   85 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g~--~V~lie~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~   85 (369)
                      ++||||||||+||++||..|++ |+  +|+|||+++++.+....+. .+...... ........+++  .++++...++.
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~   80 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMV   80 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEE
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEE
Confidence            3689999999999999999974 66  8999999987665433322 12211111 11112222222  25677777788


Q ss_pred             eeecc--eEEecCCeEEeccEEEEccCCCCCCCCChH---------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHH
Q 046865           86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (369)
Q Consensus        86 ~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~  154 (369)
                      .++..  .+.+.+++++.||+|++|||+.|..|+++.         ....+..........+++++|+|+|++|+|+|..
T Consensus        81 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~  160 (404)
T 3fg2_P           81 SIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAAT  160 (404)
T ss_dssp             EEETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHH
T ss_pred             EEECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence            88754  788888899999999999999876554321         1234455555556678999999999999999999


Q ss_pred             HhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCC
Q 046865          155 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       155 l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G  232 (369)
                      +.+  .+.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|.+++.+++. ..+.+.+|+++++|.||+|+|
T Consensus       161 l~~--~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G  238 (404)
T 3fg2_P          161 ARA--KGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVG  238 (404)
T ss_dssp             HHH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCC
T ss_pred             HHh--CCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcC
Confidence            985  4899999999999887 478899999999999999999999999998765443 357889999999999999999


Q ss_pred             CCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccc--------hhHHHHHHHHHHHHHHH
Q 046865          233 KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIK--------QGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       233 ~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~--------~~~~A~~~g~~~a~~i~  299 (369)
                      ++|+++++...++  ..+ +| |.||+++|| +.|+|||+|||+..+.+.        +.+.|..||+++|+||+
T Consensus       239 ~~p~~~l~~~~gl--~~~-~G-i~vd~~~~t-~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  308 (404)
T 3fg2_P          239 VIPNVEIAAAAGL--PTA-AG-IIVDQQLLT-SDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLT  308 (404)
T ss_dssp             EEECCHHHHHTTC--CBS-SS-EEECTTSBC-SSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTT
T ss_pred             CccCHHHHHhCCC--CCC-CC-EEECCCccc-CCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhC
Confidence            9999998877665  444 45 999999998 799999999999876432        36789999999999998

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=1.2e-39  Score=308.48  Aligned_cols=333  Identities=20%  Similarity=0.217  Sum_probs=230.3

Q ss_pred             cceEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEeeeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN   86 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (369)
                      ++||||||||++|+++|..|+    .+.+|+|||+++++.+.+..................+.+++  .+++++.+++..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~   83 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQ   83 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEE
Confidence            479999999999999999885    48999999999977654321111001111111222223322  368888889999


Q ss_pred             eecc--eEEecCCeEEeccEEEEccCCCCCC---CCChH--------HHHHHHHHH---HHHHhcCCeEEEEcCChhH--
Q 046865           87 ITEN--EVLTAEGRRVVYDYLVIATGHKDPV---PKTRT--------ERLNQYQAE---NQKIKSARSILIVGGGPTG--  148 (369)
Q Consensus        87 ~~~~--~v~~~~g~~~~~d~lviAtG~~~~~---p~~~~--------~~~~~~~~~---~~~~~~~~~v~vvG~G~~g--  148 (369)
                      ++..  .|.+.+++++.||+||+|||++|..   |+...        ..+.+....   ........+++|||+|+.+  
T Consensus        84 id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~  163 (437)
T 3sx6_A           84 IDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASC  163 (437)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCC
T ss_pred             EEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCc
Confidence            8864  7888888889999999999998654   44321        112222222   2222224566788986544  


Q ss_pred             ----HHHHHHHhhh--CCCC----e-EEEEEcCccccc----cCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE
Q 046865          149 ----VELAGEIAVD--FPEK----K-VTLVHKGSRLLE----FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT  213 (369)
Q Consensus       149 ----~e~a~~l~~~--~~~~----~-v~lv~~~~~~l~----~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  213 (369)
                          +|+|..+.+.  ..+.    + |+++++.+.+.+    .+ ++..+.+++.++++||++++++.|.+++.+  .+.
T Consensus       164 ~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~-~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~--~v~  240 (437)
T 3sx6_A          164 FGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGV-GDSKGILTKGLKEEGIEAYTNCKVTKVEDN--KMY  240 (437)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCC-TTHHHHHHHHHHHTTCEEECSEEEEEEETT--EEE
T ss_pred             CcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcc-hHHHHHHHHHHHHCCCEEEcCCEEEEEECC--eEE
Confidence                8888555431  1243    3 999999987733    23 358889999999999999999999988643  333


Q ss_pred             EEc--CC-----CcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc-------
Q 046865          214 YLT--ST-----GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR-------  279 (369)
Q Consensus       214 v~~--~~-----g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~-------  279 (369)
                      +..  .+     ++++++|.+++++|.+++..+....++   .+++|+|.||++||++++|||||+|||+..+       
T Consensus       241 ~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl---~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~  317 (437)
T 3sx6_A          241 VTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL---CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPV  317 (437)
T ss_dssp             EEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT---BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSS
T ss_pred             EEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc---cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcC
Confidence            332  33     457999999999999887655443343   5788999999999998899999999999865       


Q ss_pred             ---ccchhHHHHHHHHHHHHHHHHHhhCCCccccccccCCC-cEEEEeecCCCceEE-cC-------cccccccccceec
Q 046865          280 ---EIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHS-AIAIVSLGRKDAVAQ-LP-------FMTTIGCVPGLIK  347 (369)
Q Consensus       280 ---~~~~~~~A~~~g~~~a~~i~~~~~g~~~~~~~~~~~~~-~~~~v~lg~~~~~~~-~~-------~~~~~g~~~~~~k  347 (369)
                         .+++++.|..||+++|+||.+.+.|++   +.+|.|.. ..+++.+|...++.. ++       .+...|.+.+++|
T Consensus       318 ~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~---~~~~~~~~~~~~~~~~G~~~~~~~~~~~~p~~~~~~~~~g~~~~~~K  394 (437)
T 3sx6_A          318 PTGAPKTGYMIESMVSAAVHNIKADLEGRK---GEQTMGTWNAVAFADMGDRGAAFIALPQLKPRKVDVFAYGRWVHLAK  394 (437)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHHTTTSC---CCCCCCSCCEEEEEECSSCEEEEEEESSSSSCSEEEEEEEHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHhcCCC---CCCcccCcceEEEEEeCCCceEEEeCCCCCCcccccccccHHHHHHH
Confidence               367899999999999999999999875   33444543 456667888766532 11       1235666667777


Q ss_pred             ccccchHHH
Q 046865          348 SRDLFVGKT  356 (369)
Q Consensus       348 ~~~~~~~~~  356 (369)
                      .  .|++..
T Consensus       395 ~--~~~~~f  401 (437)
T 3sx6_A          395 V--AFEKYF  401 (437)
T ss_dssp             H--HHHHHH
T ss_pred             H--HHHHHH
Confidence            5  555543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=6.5e-40  Score=307.24  Aligned_cols=291  Identities=22%  Similarity=0.233  Sum_probs=212.9

Q ss_pred             cceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcccccceecccccc-ccceEEEeeeeeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL-VNGRIVASPAINIT   88 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (369)
                      -++|||||||+||++||.+|++   +.+|+|||+++++.+.+.................+...+. .+++|++++++.+|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id   81 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGID   81 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence            3689999999999999998863   5799999999876644322111111111111122222222 37899999999998


Q ss_pred             cc--eEEecCCeEEeccEEEEccCCCCCCC---CCh-------------HHHHHHHHHHHHHHhcCCeEEEEcCC-----
Q 046865           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP---KTR-------------TERLNQYQAENQKIKSARSILIVGGG-----  145 (369)
Q Consensus        89 ~~--~v~~~~g~~~~~d~lviAtG~~~~~p---~~~-------------~~~~~~~~~~~~~~~~~~~v~vvG~G-----  145 (369)
                      +.  .+.+.+++++.||+||+|||+++..|   +..             .+......+..........+++.+++     
T Consensus        82 ~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~  161 (401)
T 3vrd_B           82 PDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRC  161 (401)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBC
T ss_pred             ccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEe
Confidence            64  78888999999999999999986543   321             11122222222333334444443321     


Q ss_pred             -h----hHHHHHHHHhhhCCCCeEEEEEcCcccc--ccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC
Q 046865          146 -P----TGVELAGEIAVDFPEKKVTLVHKGSRLL--EFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST  218 (369)
Q Consensus       146 -~----~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  218 (369)
                       .    .+++++..+.....+.+|+++++.+.+.  +.+++.+.+.+.+.+++.||++++++++..++.+.+...+++.+
T Consensus       162 ~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~  241 (401)
T 3vrd_B          162 PPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSF  241 (401)
T ss_dssp             TTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETT
T ss_pred             ehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCC
Confidence             2    3456666666566678999999988763  45666777777778889999999999998887776777889999


Q ss_pred             CcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCc-cccchhHHHHHHHHHHHH
Q 046865          219 GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDI-REIKQGFLAQKHAQVAAK  296 (369)
Q Consensus       219 g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~-~~~~~~~~A~~~g~~~a~  296 (369)
                      |+++++|.+++++|.+|+ +++...++   .+++|+|.||++ ||++++|||||+|||++. +.+++++.|.+||+++|+
T Consensus       242 g~~i~~D~vi~~~g~~~~-~~~~~~gl---~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~  317 (401)
T 3vrd_B          242 GETFKAAVINLIPPQRAG-KIAQSASL---TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAA  317 (401)
T ss_dssp             SCEEECSEEEECCCEEEC-HHHHHTTC---CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHH
T ss_pred             CcEEEeeEEEEecCcCCc-hhHhhccc---cccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHH
Confidence            999999999999999986 56666554   578899999987 887789999999999864 567899999999999999


Q ss_pred             HHHHHhhCCCc
Q 046865          297 NLKVLMVGERE  307 (369)
Q Consensus       297 ~i~~~~~g~~~  307 (369)
                      ||++.+.|+++
T Consensus       318 ni~~~l~G~~~  328 (401)
T 3vrd_B          318 AVVALLKGEEP  328 (401)
T ss_dssp             HHHHHHHTCCC
T ss_pred             HHHHHhcCCCC
Confidence            99999998753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=1.1e-38  Score=305.84  Aligned_cols=285  Identities=20%  Similarity=0.257  Sum_probs=213.6

Q ss_pred             CCcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCcccccccccccc-C---Cc---------c---------cc-
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMV-E---PS---------F---------GE-   64 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~-~---~~---------~---------~~-   64 (369)
                      ..++||||||||+||++||..|++   +.+|+|||+++++++....+...+ .   +.         +         .. 
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP   88 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccch
Confidence            456899999999999999988853   899999999987654322211110 0   00         0         00 


Q ss_pred             cceeccccc----cccceEEEe-eeeeeec--ceEEecCCeEEeccEEEEccCCCCCCCCChH----H---------HHH
Q 046865           65 RSVINHTDY----LVNGRIVAS-PAINITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT----E---------RLN  124 (369)
Q Consensus        65 ~~~~~~~~~----~~~~~~~~~-~~~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~----~---------~~~  124 (369)
                      ..+.....+    ..+++++.+ .+..++.  ++|.+.+|+++.||+||||||++|..|+...    .         .+.
T Consensus        89 ~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~  168 (493)
T 1m6i_A           89 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIG  168 (493)
T ss_dssp             GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHH
T ss_pred             HhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHH
Confidence            000000011    125777776 6777764  5788888989999999999999988765322    1         122


Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhC--CCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCce
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF--PEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~--~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      ++..+......+++++|||+|++|+|+|..|.+..  .+.+|+++++.+++++ .+++++.+.+.+.++++||++++++.
T Consensus       169 d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~  248 (493)
T 1m6i_A          169 DFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAI  248 (493)
T ss_dssp             HHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCC
T ss_pred             HHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCE
Confidence            33334444567899999999999999999987531  3689999998877664 46778999999999999999999999


Q ss_pred             eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCC-CCcEEeCCceeeccCCCeEEecccCCccc
Q 046865          202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT-DGMLMVDENLRVKGQKNIFAIGDITDIRE  280 (369)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~-~g~i~vd~~l~~~~~~~i~a~GD~~~~~~  280 (369)
                      |.+++.+++.+.+++.+|+++++|.||+|+|++||++++...++  ++++ +|+|.||++||+  .|+|||+|||+..+.
T Consensus       249 V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl--~~~~~~ggi~Vd~~l~t--~~~IyA~GD~a~~~~  324 (493)
T 1m6i_A          249 VQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGL--EIDSDFGGFRVNAELQA--RSNIWVAGDAACFYD  324 (493)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTC--CBCTTTCSEECCTTCEE--ETTEEECGGGEEEEE
T ss_pred             EEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCC--ccccCCCcEEECCCccc--CCCeeEeeeeEeccC
Confidence            99987655556788889999999999999999999988766555  5564 688999999997  599999999997543


Q ss_pred             c-------chhHHHHHHHHHHHHHHH
Q 046865          281 I-------KQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       281 ~-------~~~~~A~~~g~~~a~~i~  299 (369)
                      +       .....|..||++||+||+
T Consensus       325 ~~~g~~~~~~~~~A~~qg~~aa~ni~  350 (493)
T 1m6i_A          325 IKLGRRRVEHHDHAVVSGRLAGENMT  350 (493)
T ss_dssp             TTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred             cccCccccchHHHHHHHHHHHHHHhc
Confidence            2       234589999999999997

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=5.5e-39  Score=288.45  Aligned_cols=276  Identities=16%  Similarity=0.153  Sum_probs=204.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCc-ccccce----eccccccccceEEEeeeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGERSV----INHTDYLVNGRIVASPAIN   86 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~   86 (369)
                      ++||+|||||++|+++|..|+ .|++|+|||+++..+..+.....+.... .....+    ......+.+++++.+++..
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~   81 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTD   81 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEE
Confidence            589999999999999999996 5999999999865443221111111111 111111    1111122357788888888


Q ss_pred             eecc----eEEecCCeEEeccEEEEccCCCCCCCCChHH------HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHh
Q 046865           87 ITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA  156 (369)
Q Consensus        87 ~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~  156 (369)
                      ++..    .+.+.+++++.||+||+|||+.|..|.++..      .+............+++++|+|+|++|+|+|..|.
T Consensus        82 i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~  161 (297)
T 3fbs_A           82 AKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLP  161 (297)
T ss_dssp             EEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGG
T ss_pred             EEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhh
Confidence            8754    6777788889999999999999765543211      11111111223345899999999999999999998


Q ss_pred             hhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          157 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       157 ~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      +.  + +|+++++.+.       .+.+.+.+.+++.||+++. +.|.+++.++   .+++.+|+++++|.+|+|+|++|+
T Consensus       162 ~~--g-~v~~v~~~~~-------~~~~~~~~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~p~  227 (297)
T 3fbs_A          162 DW--G-ETTFFTNGIV-------EPDADQHALLAARGVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLRIT  227 (297)
T ss_dssp             GT--S-EEEEECTTTC-------CCCHHHHHHHHHTTCEEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEECC
T ss_pred             hc--C-cEEEEECCCC-------CCCHHHHHHHHHCCcEEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcccC
Confidence            53  6 9999998765       3456678889999999996 8888886433   678889999999999999999999


Q ss_pred             chhhcccccCCCCCCCC-cEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865          237 SDWLKDTILKDSLDTDG-MLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       237 ~~~l~~~~~~~~~~~~g-~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                      ++++...++....+++| ++.||++++| +.|+|||+|||++.  +++++.|..||+.||.||.+.+.+.
T Consensus       228 ~~~~~~~g~~~~~~~~G~~i~vd~~~~t-~~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~~~l~~~  294 (297)
T 3fbs_A          228 VDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDVARP--AGSVALAVGDGAMAGAAAHRSILFP  294 (297)
T ss_dssp             CSCHHHHTCCEEEETTEEEECCCTTCBC-SSTTEEECSGGGCT--TCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             chhHHhcCCccccCCCCceEEeCCCCcc-CCCCEEEEeecCCc--hHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            98877655532222467 8999999998 79999999999986  3478999999999999999988765

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=1.8e-38  Score=288.51  Aligned_cols=284  Identities=18%  Similarity=0.193  Sum_probs=205.7

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccc-cCCcccc---cceec-ccccc--ccceEEEe
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-VEPSFGE---RSVIN-HTDYL--VNGRIVAS   82 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~-~~~~~~~---~~~~~-~~~~~--~~~~~~~~   82 (369)
                      .+++||+|||||++|+++|+.|+ +|++|+|||++  ++..+...... ..+.+..   ..+.. ..++.  .++++...
T Consensus        13 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   90 (323)
T 3f8d_A           13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLD   90 (323)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEES
T ss_pred             CCccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            34689999999999999999996 59999999998  44332211110 0011111   11111 11111  14666667


Q ss_pred             eeeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChH------HHHHHHHHHHHHHhcCCeEEEEcCChhHHHHH
Q 046865           83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRT------ERLNQYQAENQKIKSARSILIVGGGPTGVELA  152 (369)
Q Consensus        83 ~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a  152 (369)
                      .+..++..    .+.+.++.++.||+||+|||+.|..|.++.      ..+............+++++|+|+|++++|+|
T Consensus        91 ~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a  170 (323)
T 3f8d_A           91 IVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGA  170 (323)
T ss_dssp             CEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHH
T ss_pred             EEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHH
Confidence            77777654    567777789999999999999976654432      11111112222445679999999999999999


Q ss_pred             HHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC---Cc--EEeccEE
Q 046865          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST---GD--TIKADCH  227 (369)
Q Consensus       153 ~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~d~v  227 (369)
                      ..|.+.  +.+|+++++.+++++  ++   ..+.+.+++.||++++++.+.+++.++....+++.+   |+  ++++|.|
T Consensus       171 ~~l~~~--g~~v~~~~~~~~~~~--~~---~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~v  243 (323)
T 3f8d_A          171 EILSSY--STKVYLIHRRDTFKA--QP---IYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGV  243 (323)
T ss_dssp             HHHHHH--SSEEEEECSSSSCCS--CH---HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             HHHHHh--CCeEEEEEeCCCCCc--CH---HHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEE
Confidence            999864  899999999988765  22   223333445599999999999987654433455544   75  7999999


Q ss_pred             EEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc-ccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          228 FLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR-EIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       228 i~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~-~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      |+|+|++|+++++...++  .++++|+|.||+++|| +.|||||+|||++.+ .++++..|..||+.+|.||.+.+.+++
T Consensus       244 v~a~G~~p~~~~~~~~g~--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~  320 (323)
T 3f8d_A          244 FIEIGFDPPTDFAKSNGI--ETDTNGYIKVDEWMRT-SVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEKK  320 (323)
T ss_dssp             EECCCEECCHHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEECCCCChhHHhhcCe--eecCCCcEecCCCcee-cCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHHHhh
Confidence            999999999888876554  6788999999999998 799999999999863 345789999999999999999987654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.1e-38  Score=288.99  Aligned_cols=283  Identities=18%  Similarity=0.179  Sum_probs=189.8

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccccc-CCccccc---cee-cccccc--ccceEE
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSFGER---SVI-NHTDYL--VNGRIV   80 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~-~~~~~~~---~~~-~~~~~~--~~~~~~   80 (369)
                      |+...|||+||||||||++||.+|+ .|++|+|||++.. +..+....... -+.+...   .+. ......  ....+.
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~-gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIP-GGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQ   80 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-TGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCeeecccccCCcCCccccchHHHHHHHHHHHhhcccccc
Confidence            4556799999999999999999986 5999999998653 32211110000 0111100   000 000000  012222


Q ss_pred             Eeee-eeee--cceEEecCCeEEeccEEEEccCCCCCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCChhHHHH
Q 046865           81 ASPA-INIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVEL  151 (369)
Q Consensus        81 ~~~~-~~~~--~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G~~g~e~  151 (369)
                      .... ...+  ...+...+++++.||+||||||++|..|+++...      +..+.........+++++|||+|++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~  160 (312)
T 4gcm_A           81 YGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEE  160 (312)
T ss_dssp             ECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHH
T ss_pred             ceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHH
Confidence            2211 1111  2245566778999999999999987665543211      11112222334567999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC---eE-EEcC--CCcEEecc
Q 046865          152 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS---DT-YLTS--TGDTIKAD  225 (369)
Q Consensus       152 a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---~~-v~~~--~g~~i~~d  225 (369)
                      |..|+  ..+.+||++++.+++++..     ....+.++..++.......+......+..   .. ....  ++..+++|
T Consensus       161 A~~l~--~~g~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  233 (312)
T 4gcm_A          161 GTFLT--KFADKVTIVHRRDELRAQR-----ILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEAD  233 (312)
T ss_dssp             HHHHT--TTCSEEEEECSSSSCCSCH-----HHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECS
T ss_pred             HHHHH--hcCCEEEEEecccccCcch-----hHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeee
Confidence            99998  4599999999999887532     22345667788888877766655433321   11 1222  33579999


Q ss_pred             EEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          226 CHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       226 ~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      .|++++|..|++.++...++   .+++|+|.||++||| +.|+|||+|||++.+ +++++.|+.||+.||.||.++|+.
T Consensus       234 ~v~~~~g~~~~~~~~~~~g~---~~~~G~I~vd~~~~T-s~pgIyA~GDv~~~~-~~~~~~A~~~G~~AA~~i~~~L~~  307 (312)
T 4gcm_A          234 GVFIYIGMKPLTAPFKDLGI---TNDVGYIVTKDDMTT-SVPGIFAAGDVRDKG-LRQIVTATGDGSIAAQSAAEYIEH  307 (312)
T ss_dssp             EEEECSCEEESCGGGGGGTC---BCTTSCBCCCTTSBC-SSTTEEECSTTBSCS-CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEeecCCCcCchhHHhcce---ecCCCeEeeCCCCcc-CCCCEEEEeecCCCc-chHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988776654   467899999999998 799999999999753 347889999999999999988754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=8e-38  Score=284.80  Aligned_cols=281  Identities=17%  Similarity=0.189  Sum_probs=200.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccccc-CCccc----ccceec-ccccc--ccceEEEe
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSFG----ERSVIN-HTDYL--VNGRIVAS   82 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~-~~~~~----~~~~~~-~~~~~--~~~~~~~~   82 (369)
                      .++||+|||||++|+++|..|+ .|++|+|||++ .++..+....... .+.+.    ...+.. ..+..  .+++++.+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~   85 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMD   85 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEee
Confidence            3689999999999999999986 59999999998 3443332111000 01111    001111 11111  25677767


Q ss_pred             eeeeeecc-------eEEecCCeEEeccEEEEccCCCCCCCCChHH------HHHHHHHHHHHHhcCCeEEEEcCChhHH
Q 046865           83 PAINITEN-------EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGV  149 (369)
Q Consensus        83 ~~~~~~~~-------~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~  149 (369)
                      ++..++..       .+.+.+++++.||+||+|||+.|..|+++..      .+..+.........+++++|+|+|++|+
T Consensus        86 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~  165 (325)
T 2q7v_A           86 EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAV  165 (325)
T ss_dssp             CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHH
T ss_pred             eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHH
Confidence            77766532       4566678889999999999998766654321      1111111222345679999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHH-hCCcEEEeCceeeeccCCCCCeEEEcC---CCc--EEe
Q 046865          150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLI-SKKVDVKLGQRVNLDSVSEGSDTYLTS---TGD--TIK  223 (369)
Q Consensus       150 e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~i~  223 (369)
                      |+|..|.+  .+.+|+++++.+.+..  +    ..+.+.+. +.||++++++++.++..++....+++.   +|+  +++
T Consensus       166 e~A~~l~~--~g~~Vtlv~~~~~~~~--~----~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~  237 (325)
T 2q7v_A          166 EEGMFLTK--FADEVTVIHRRDTLRA--N----KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELA  237 (325)
T ss_dssp             HHHHHHTT--TCSEEEEECSSSSCCS--C----HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEE
T ss_pred             HHHHHHHh--cCCEEEEEeCCCcCCc--c----hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEE
Confidence            99999984  4899999999887632  2    23344454 469999999999998764332244443   565  799


Q ss_pred             ccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865          224 ADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       224 ~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      +|.||+|+|++|+++++...   +.++++|+|.||+++|| +.|+|||+|||++.+ +++++.|..||+.+|.||...+.
T Consensus       238 ~D~vi~a~G~~p~~~~l~~~---~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~  312 (325)
T 2q7v_A          238 TDGVFIFIGHVPNTAFVKDT---VSLRDDGYVDVRDEIYT-NIPMLFAAGDVSDYI-YRQLATSVGAGTRAAMMTERQLA  312 (325)
T ss_dssp             CSEEEECSCEEESCGGGTTT---SCBCTTSCBCCBTTTBC-SSTTEEECSTTTCSS-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEccCCCCChHHHhhh---cccCCCccEecCCCCcc-CCCCEEEeecccCcc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888654   36788899999999998 799999999999763 35789999999999999999887


Q ss_pred             CCC
Q 046865          304 GER  306 (369)
Q Consensus       304 g~~  306 (369)
                      +.+
T Consensus       313 ~~~  315 (325)
T 2q7v_A          313 ALE  315 (325)
T ss_dssp             HC-
T ss_pred             Hhh
Confidence            754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=1.7e-37  Score=279.93  Aligned_cols=279  Identities=15%  Similarity=0.173  Sum_probs=195.5

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCC-cccccce----eccccccccceEEEeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGERSV----INHTDYLVNGRIVASPA   84 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~   84 (369)
                      +++|||+||||||||++||.+|+ .|++|+|||++...+........+... ......+    ......+..+.+....+
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTV   83 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCE
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEE
Confidence            45799999999999999999886 599999999976543222111111111 0110001    01111123456666666


Q ss_pred             eeeec-----ceEEecCCeEEeccEEEEccCCCCCCCCChHHHH------HHHHHHHHHHhcCCeEEEEcCChh-HHHHH
Q 046865           85 INITE-----NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL------NQYQAENQKIKSARSILIVGGGPT-GVELA  152 (369)
Q Consensus        85 ~~~~~-----~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~------~~~~~~~~~~~~~~~v~vvG~G~~-g~e~a  152 (369)
                      ..++.     .++.+.+++++.||+||||||++|..|+++....      .............++++|||||.. ++|+|
T Consensus        84 ~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a  163 (304)
T 4fk1_A           84 VMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMT  163 (304)
T ss_dssp             EEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHH
T ss_pred             EEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHH
Confidence            55542     2677888999999999999999988777653221      111222223345677888888765 57777


Q ss_pred             HHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcC
Q 046865          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCT  231 (369)
Q Consensus       153 ~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~  231 (369)
                      ..+.  ..+.+|+++.+.+.+        .+.+.+.|+++|++++.++ +..+..+++ ...+++.+|+++++|.+++++
T Consensus       164 ~~~~--~~~~~v~i~~~~~~~--------~~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~  232 (304)
T 4fk1_A          164 KLVY--NWSTDLVIATNGNEL--------SQTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSGLRIERAGGFIVP  232 (304)
T ss_dssp             HHHT--TTCSCEEEECSSCCC--------CHHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTSCEECCCEEEECC
T ss_pred             HHHH--hCCceEEEEeccccc--------hhhhhhhhhccceeEeeee-EEEeecCCCeeeeeeccccceeeecceeeee
Confidence            7765  458999999877643        3566778899999999875 555554443 345788999999999988888


Q ss_pred             CCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          232 GKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       232 G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      |.+|+..++...+  ++++++|+|.||+++|| +.|+|||+|||++.+ +++...|+.||+.||.+|.++|..
T Consensus       233 g~~~~~~~~~~~g--~~~~~~G~I~vd~~~~T-s~p~IyA~GDv~~~~-~~~~~~A~~~G~~AA~~i~~~L~~  301 (304)
T 4fk1_A          233 TFFRPNQFIEQLG--CELQSNGTFVIDDFGRT-SEKNIYLAGETTTQG-PSSLIIAASQGNKAAIAINSDITD  301 (304)
T ss_dssp             EEECSSCHHHHTT--CCCCTTSSSCSSTTCBC-SSTTEEECSHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCChhhhhcC--eEECCCCCEEECcCCcc-CCCCEEEEeccCCCc-chHHHHHHHHHHHHHHHHHHHHhh
Confidence            8777766666544  47889999999999998 799999999999754 346788999999999999988764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=3.3e-37  Score=289.53  Aligned_cols=284  Identities=18%  Similarity=0.208  Sum_probs=210.3

Q ss_pred             ceEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEeeeeee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVASPAINI   87 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (369)
                      +||||||||++|+++|..|+    .|.+|+|||+++.+.+.+....................+.+  .+++++.+++..+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   81 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI   81 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence            58999999999999999885    48999999999977654322211111111112222222222  2678888888888


Q ss_pred             ecc--eEEecCCe----EEeccEEEEccCCCCCCCCChHHH--------HHHHHHHHHHHhc-CCeEEEEcCCh------
Q 046865           88 TEN--EVLTAEGR----RVVYDYLVIATGHKDPVPKTRTER--------LNQYQAENQKIKS-ARSILIVGGGP------  146 (369)
Q Consensus        88 ~~~--~v~~~~g~----~~~~d~lviAtG~~~~~p~~~~~~--------~~~~~~~~~~~~~-~~~v~vvG~G~------  146 (369)
                      +..  .|.+.++.    ++.||+||+|||+.|..|.++...        ..+.....+.... .++++|||+|+      
T Consensus        82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~  161 (409)
T 3h8l_A           82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN  161 (409)
T ss_dssp             ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCS
T ss_pred             eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCC
Confidence            754  67776664    399999999999997755432111        1112222222222 25677999992      


Q ss_pred             -------------------hHHHHHHHHhhh--CCC----CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCce
Q 046865          147 -------------------TGVELAGEIAVD--FPE----KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       147 -------------------~g~e~a~~l~~~--~~~----~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                                         .++|+|..+.+.  ..+    .+|+++++.+ +++.+++++.+.+.+.+++.||++++++.
T Consensus       162 ~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~  240 (409)
T 3h8l_A          162 PKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFK  240 (409)
T ss_dssp             SCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred             ccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCc
Confidence                               478888655421  224    5899999988 78888899999999999999999999999


Q ss_pred             eeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc
Q 046865          202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI  281 (369)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~  281 (369)
                      |++++.+    .+++++|+++++|.+|+++|++|+ +++...+.++ .+++|+|.||+++|++++|||||+|||++.+.+
T Consensus       241 v~~i~~~----~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~  314 (409)
T 3h8l_A          241 IKEIREH----EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVP  314 (409)
T ss_dssp             EEEECSS----EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCS
T ss_pred             eEEECCC----eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCC
Confidence            9988643    277788999999999999999997 4565553232 467899999999999889999999999987777


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhC
Q 046865          282 KQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       282 ~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ++++.|..||+++|+||...+.+
T Consensus       315 ~~~~~A~~q~~~aa~~i~~~l~~  337 (409)
T 3h8l_A          315 KLGYLAVMTGRIAAQHLANRLGV  337 (409)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcC
Confidence            78999999999999999998844

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.6e-37  Score=282.12  Aligned_cols=281  Identities=19%  Similarity=0.193  Sum_probs=200.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccccc-CCcc---cccceec-ccccc--ccceEEEe
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSF---GERSVIN-HTDYL--VNGRIVAS   82 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~-~~~~---~~~~~~~-~~~~~--~~~~~~~~   82 (369)
                      .+++||+|||||++|+++|..|+ .|++|+|||++. ++..+....... .+.+   ....+.. ..+..  .+++++..
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   92 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGV   92 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETC
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEe
Confidence            34689999999999999999997 599999999954 332221110000 0111   0001110 11111  14566666


Q ss_pred             eeeeeec--c--eEEecCCeEEeccEEEEccCCCCCCCCChHH------HHHHHHHHHHHHhcCCeEEEEcCChhHHHHH
Q 046865           83 PAINITE--N--EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELA  152 (369)
Q Consensus        83 ~~~~~~~--~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a  152 (369)
                      ++..++.  +  .+.+ ++.++.||++|+|||+.|..|+++..      .+..+..........++++|+|+|++|+|+|
T Consensus        93 ~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a  171 (319)
T 3cty_A           93 EVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAA  171 (319)
T ss_dssp             CEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHH
T ss_pred             eEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHH
Confidence            6666653  2  3544 56689999999999998776654321      1111111222345679999999999999999


Q ss_pred             HHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcC---CCc--EEeccE
Q 046865          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTS---TGD--TIKADC  226 (369)
Q Consensus       153 ~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~---~g~--~i~~d~  226 (369)
                      ..|.+  .+.+|+++++.+++..      .+.+.+.+++.||++++++++.++..+++. ..+.+.   +|+  ++++|.
T Consensus       172 ~~l~~--~g~~V~~i~~~~~~~~------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~  243 (319)
T 3cty_A          172 ISMSE--YVKNVTIIEYMPKYMC------ENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDG  243 (319)
T ss_dssp             HHHTT--TBSEEEEECSSSSCCS------CHHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSE
T ss_pred             HHHHh--hCCcEEEEEcCCccCC------CHHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCE
Confidence            99984  4899999999887632      234566677899999999999998765442 234443   564  699999


Q ss_pred             EEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865          227 HFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       227 vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                      ||+|+|++|+++++...++  .++++|+|.||+++|+ +.|+|||+|||++.+ +++++.|+.||+.+|.||.+.+.++
T Consensus       244 vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~  318 (319)
T 3cty_A          244 VFIYVGLIPQTSFLKDSGV--KLDERGYIVVDSRQRT-SVPGVYAAGDVTSGN-FAQIASAVGDGCKAALSLYSDSISK  318 (319)
T ss_dssp             EEECCCEEECCGGGTTSCC--CBCTTSCBCCCTTCBC-SSTTEEECSTTBTTC-CCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEeeCCccChHHHhhccc--cccCCccEeCCCCCcc-CCCCEEEeecccCcc-hhhHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999998875544  6788899999999997 799999999999863 3578899999999999999988764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=1.1e-36  Score=275.92  Aligned_cols=280  Identities=19%  Similarity=0.213  Sum_probs=192.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc-ccc--cccC--Ccccc----ccee-cccccc--ccce
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLR--AMVE--PSFGE----RSVI-NHTDYL--VNGR   78 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~-~~~--~~~~--~~~~~----~~~~-~~~~~~--~~~~   78 (369)
                      ..|||+||||||||++||.+|+ .|++|+|||++...+..+. .+.  ..+.  +.+..    ..+. ......  .+..
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~   82 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTT   82 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcE
Confidence            4699999999999999999886 5999999999764332111 110  0000  01110    0000 000111  1334


Q ss_pred             EEEeeeeeeec----ceEEecCCeEEeccEEEEccCCCCCCCCChHHHHH--------HHHHHHHHHhcCCeEEEEcCCh
Q 046865           79 IVASPAINITE----NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN--------QYQAENQKIKSARSILIVGGGP  146 (369)
Q Consensus        79 ~~~~~~~~~~~----~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~--------~~~~~~~~~~~~~~v~vvG~G~  146 (369)
                      +....+.....    ..+.+.++.++.||+||||||+.|..|+++.....        ...........+++++|+|+|+
T Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~  162 (314)
T 4a5l_A           83 IITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGD  162 (314)
T ss_dssp             EECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSH
T ss_pred             EEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCCh
Confidence            44444443332    25667778899999999999999876665432211        1111122234678999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC---CeEEE---cCCCc
Q 046865          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG---SDTYL---TSTGD  220 (369)
Q Consensus       147 ~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~~~v~---~~~g~  220 (369)
                      +|+|+|..|.  ..+.+|+++++.+.....     .....+.+...+++.+....+.++...+.   .+.+.   +.+++
T Consensus       163 ig~e~A~~l~--~~G~~Vt~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  235 (314)
T 4a5l_A          163 AAMEEALHLT--KYGSKVIILHRRDAFRAS-----KTMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYK  235 (314)
T ss_dssp             HHHHHHHHHT--TTSSEEEEECSSSSCCSC-----HHHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEE
T ss_pred             HHHHHHHHHH--HhCCeeeeeccccccccc-----chhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccce
Confidence            9999999998  459999999987764321     23344556677888888888777654332   22332   23456


Q ss_pred             EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHH
Q 046865          221 TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV  300 (369)
Q Consensus       221 ~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~  300 (369)
                      ++++|.+++++|++||++++...   +.++++|.+ ||+++|| +.|+|||+|||++.+. ++...|+.||+.||.++.+
T Consensus       236 ~i~~d~vi~a~G~~pn~~~l~~~---~~~~~~G~i-v~~~~~T-s~pgIyA~GDv~~~~~-~~~~~A~~~G~~AA~~~~~  309 (314)
T 4a5l_A          236 VVPVAGLFYAIGHSPNSKFLGGQ---VKTADDGYI-LTEGPKT-SVDGVFACGDVCDRVY-RQAIVAAGSGCMAALSCEK  309 (314)
T ss_dssp             EEECSEEEECSCEEESCGGGTTS---SCBCTTSCB-CCBTTBC-SSTTEEECSTTTCSSC-CCHHHHHHHHHHHHHHHHH
T ss_pred             eeccccceEecccccChhHhccc---ceEcCCeeE-eCCCCcc-CCCCEEEEEeccCCcc-hHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999988653   367788876 8999998 7999999999998653 4678899999999999998


Q ss_pred             HhhC
Q 046865          301 LMVG  304 (369)
Q Consensus       301 ~~~g  304 (369)
                      +|+.
T Consensus       310 yL~~  313 (314)
T 4a5l_A          310 WLQT  313 (314)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8753

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=2.2e-37  Score=280.40  Aligned_cols=283  Identities=16%  Similarity=0.131  Sum_probs=201.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEE-EcCCCCcccccccccccc-CCccc----cccee-cccccc--ccceEEE
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTL-IDPKEYFEITWASLRAMV-EPSFG----ERSVI-NHTDYL--VNGRIVA   81 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~l-ie~~~~~~~~~~~~~~~~-~~~~~----~~~~~-~~~~~~--~~~~~~~   81 (369)
                      .++||+|||||+||++||..|+ .|++|+| +|+ +.++..+....... .+.+.    ...+. ....+.  .+++++.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   81 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEM   81 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEE
Confidence            4689999999999999999997 5999999 999 44444332211110 01111    01111 111111  1466777


Q ss_pred             eeeeee-ec--ceEE--e-cCCeEEeccEEEEccCCCCCCCCChH------HHHHHHHHHHHHHhcCCeEEEEcCChhHH
Q 046865           82 SPAINI-TE--NEVL--T-AEGRRVVYDYLVIATGHKDPVPKTRT------ERLNQYQAENQKIKSARSILIVGGGPTGV  149 (369)
Q Consensus        82 ~~~~~~-~~--~~v~--~-~~g~~~~~d~lviAtG~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~vvG~G~~g~  149 (369)
                      +++..+ +.  +.+.  + .++ ++.||+||+|||+.|..|.++.      ..+............+++++|+|+|++++
T Consensus        82 ~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~  160 (315)
T 3r9u_A           82 VGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTAL  160 (315)
T ss_dssp             CCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHH
T ss_pred             EEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHH
Confidence            777776 33  2222  2 344 8999999999999876665432      11111222233345689999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC---eEEEcCCCc--EEec
Q 046865          150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS---DTYLTSTGD--TIKA  224 (369)
Q Consensus       150 e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~  224 (369)
                      |+|..|.+  .+.+|+++++.+++..  +   ...+.+.+++.||++++++.+.+++.+++.   +.+...+|+  ++++
T Consensus       161 e~a~~l~~--~g~~v~~~~~~~~~~~--~---~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~  233 (315)
T 3r9u_A          161 EEALYLAN--ICSKIYLIHRRDEFRA--A---PSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNV  233 (315)
T ss_dssp             HHHHHHHT--TSSEEEEECSSSSCBS--C---HHHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECC
T ss_pred             HHHHHHHh--hCCEEEEEEeCCCCCC--C---HHHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeec
Confidence            99999985  4899999999887632  2   234455567899999999999998765532   333334775  7999


Q ss_pred             cEEEEcCCCCCCchhhcc-cccC-CCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHh
Q 046865          225 DCHFLCTGKPVGSDWLKD-TILK-DSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       225 d~vi~a~G~~p~~~~l~~-~~~~-~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~  302 (369)
                      |.+|+|+|++|+++++.. ..++ +.++++|+|.||+++|| +.|+|||+|||++.+ +++...|+.||+.||.||.+.+
T Consensus       234 D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t-~~~~v~a~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l  311 (315)
T 3r9u_A          234 PGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT-SVAGLFAAGDLRKDA-PKQVICAAGDGAVAALSAMAYI  311 (315)
T ss_dssp             SCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECGGGBTTC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCccc-CCCCEEEeecccCCc-hhhhhhHHhhHHHHHHHHHHHH
Confidence            999999999999998876 3343 57788999999999998 799999999998643 4578999999999999999988


Q ss_pred             hCC
Q 046865          303 VGE  305 (369)
Q Consensus       303 ~g~  305 (369)
                      .++
T Consensus       312 ~~~  314 (315)
T 3r9u_A          312 ESL  314 (315)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=3.9e-37  Score=279.55  Aligned_cols=284  Identities=15%  Similarity=0.189  Sum_probs=205.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccc-cCCccc----ccceec-ccccc--ccceEEEe
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-VEPSFG----ERSVIN-HTDYL--VNGRIVAS   82 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~-~~~~~~----~~~~~~-~~~~~--~~~~~~~~   82 (369)
                      +++||+|||||++|+++|..|+ .|++|+|||+.. .+..+...... ..+.+.    ...+.. ...+.  .+++++.+
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD   82 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence            3589999999999999999996 489999999753 33222111000 001111    001110 11111  25677777


Q ss_pred             eeeeeecc--eEE-ecCCeEEeccEEEEccCCCCCCCCChHHHH------HHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865           83 PAINITEN--EVL-TAEGRRVVYDYLVIATGHKDPVPKTRTERL------NQYQAENQKIKSARSILIVGGGPTGVELAG  153 (369)
Q Consensus        83 ~~~~~~~~--~v~-~~~g~~~~~d~lviAtG~~~~~p~~~~~~~------~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~  153 (369)
                      ++..++..  .+. +.++.++.||+||+|||+.|..|+++....      ..+.........+++++|+|+|++|+|+|.
T Consensus        83 ~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~  162 (320)
T 1trb_A           83 HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEAL  162 (320)
T ss_dssp             CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHH
T ss_pred             eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHH
Confidence            77777643  222 567788999999999999988877654221      111122223456899999999999999999


Q ss_pred             HHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCC----C--cEEeccE
Q 046865          154 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTST----G--DTIKADC  226 (369)
Q Consensus       154 ~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~----g--~~i~~d~  226 (369)
                      .|.+  .+.+|+++++.+.+..  ++.+.+.+.+.+++.||++++++.+.+++.+++.+ .+++.+    |  +++++|.
T Consensus       163 ~l~~--~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~  238 (320)
T 1trb_A          163 YLSN--IASEVHLIHRRDGFRA--EKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAG  238 (320)
T ss_dssp             HHTT--TSSEEEEECSSSSCCC--CHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSE
T ss_pred             HHHh--cCCeEEEEEeCCcccc--CHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCE
Confidence            9984  4899999999887643  56778888889999999999999999987655332 244433    4  5799999


Q ss_pred             EEEcCCCCCCchhhcccccCCCCCCCCcEEeCCce-----eeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHH
Q 046865          227 HFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENL-----RVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       227 vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l-----~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~  301 (369)
                      ||+|+|++|+++++. .++  .++ +|+|.||++|     ++ +.|+|||+|||++.+ ++++..|..+|+.||.||.+.
T Consensus       239 vv~a~G~~p~~~~~~-~~l--~~~-~G~i~vd~~~~~~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~  312 (320)
T 1trb_A          239 LFVAIGHSPNTAIFE-GQL--ELE-NGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI-YRQAITSAGTGCMAALDAERY  312 (320)
T ss_dssp             EEECSCEEESCGGGT-TTS--CEE-TTEECCCCSSSSCTTBC-SSTTEEECGGGGCSS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCChHHhc-ccc--ccc-CceEEECCCcccccccC-CCCCEEEcccccCCc-chhhhhhhccHHHHHHHHHHH
Confidence            999999999998876 233  567 8999999997     55 799999999999864 346889999999999999999


Q ss_pred             hhCCC
Q 046865          302 MVGER  306 (369)
Q Consensus       302 ~~g~~  306 (369)
                      |.+.+
T Consensus       313 l~~~~  317 (320)
T 1trb_A          313 LDGLA  317 (320)
T ss_dssp             HTC--
T ss_pred             HHhcc
Confidence            98753

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=2.2e-37  Score=280.11  Aligned_cols=280  Identities=19%  Similarity=0.193  Sum_probs=200.0

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCCCccccccccccc-cCCcc----cccceec-ccccc--ccceEEEee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWASLRAM-VEPSF----GERSVIN-HTDYL--VNGRIVASP   83 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~~~~~~~~~~~~~-~~~~~----~~~~~~~-~~~~~--~~~~~~~~~   83 (369)
                      +||+|||||++|+++|..|+ .|+ +|+|||++. ++..+...... ..+.+    ....+.. ..+.+  .+++++..+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~   80 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTA   80 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECSC
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence            79999999999999999986 589 999999964 33222111000 00111    1011111 11111  146666666


Q ss_pred             eeeeec--c--eEEecCCeEEeccEEEEccCCCCCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCChhHHHHHH
Q 046865           84 AINITE--N--EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (369)
Q Consensus        84 ~~~~~~--~--~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~  153 (369)
                      +..++.  +  .+.+.+++++.||+||+|||+.|..|+++...      +..+..........++++|+|+|++|+|+|.
T Consensus        81 v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~  160 (311)
T 2q0l_A           81 VQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAI  160 (311)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHH
T ss_pred             EEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHH
Confidence            766653  3  56667788899999999999988777654321      1111122233456799999999999999999


Q ss_pred             HHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHH-hCCcEEEeCceeeeccCCCCCe-EEEcC---CCc--EEeccE
Q 046865          154 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLI-SKKVDVKLGQRVNLDSVSEGSD-TYLTS---TGD--TIKADC  226 (369)
Q Consensus       154 ~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~i~~d~  226 (369)
                      .|.+  .+.+|+++++.+++.  .+    ..+.+.+. +.||++++++.+.+++.+++.+ .+++.   +|+  ++++|.
T Consensus       161 ~l~~--~g~~Vtlv~~~~~~~--~~----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~  232 (311)
T 2q0l_A          161 YLAN--ICKKVYLIHRRDGFR--CA----PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPG  232 (311)
T ss_dssp             HHHT--TSSEEEEECSSSSCC--SC----HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSE
T ss_pred             HHHh--cCCEEEEEeeCCccC--CC----HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCE
Confidence            9984  489999999988763  22    23445554 4799999999999887553332 34443   565  799999


Q ss_pred             EEEcCCCCCCchhhcccc--cCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          227 HFLCTGKPVGSDWLKDTI--LKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       227 vi~a~G~~p~~~~l~~~~--~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ||+|+|++|+++++...+  .++.++++|+|.||+++|| +.|+|||+|||++.+ +++++.|..||+.+|.||.+.+.+
T Consensus       233 vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~  310 (311)
T 2q0l_A          233 FFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKT-NVQGLFAAGDIRIFA-PKQVVCAASDGATAALSVISYLEH  310 (311)
T ss_dssp             EEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECSTTBTTC-CCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCccChhhhhcccccceeEeccCCCEEeCCcccc-CCCCeEEcccccCcc-hHHHHHHHHhHHHHHHHHHHHHhh
Confidence            999999999999887653  1246778899999999998 799999999999863 457899999999999999988764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=1.1e-37  Score=285.14  Aligned_cols=284  Identities=14%  Similarity=0.159  Sum_probs=202.1

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC----Ccccccccccccc-CCcccc----ccee-cccccc--c
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE----YFEITWASLRAMV-EPSFGE----RSVI-NHTDYL--V   75 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~----~~~~~~~~~~~~~-~~~~~~----~~~~-~~~~~~--~   75 (369)
                      +..+++||+|||||++|+++|+.|+ .|++|+|||+++    ..+..+....... -+.+..    ..+. .....+  .
T Consensus        18 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (338)
T 3itj_A           18 GSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKF   97 (338)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHc
Confidence            3456799999999999999999997 599999999955    3333222111000 011111    0111 111111  2


Q ss_pred             cceEEEeeeeeeecc----eEEe---cCCeEEeccEEEEccCCCCCCCCChHHHH------HHHHHHHHH--HhcCCeEE
Q 046865           76 NGRIVASPAINITEN----EVLT---AEGRRVVYDYLVIATGHKDPVPKTRTERL------NQYQAENQK--IKSARSIL  140 (369)
Q Consensus        76 ~~~~~~~~~~~~~~~----~v~~---~~g~~~~~d~lviAtG~~~~~p~~~~~~~------~~~~~~~~~--~~~~~~v~  140 (369)
                      +++++.+.+..++..    .+.+   .++.++.||+||+|||+.|..|.++....      .........  ...+++++
T Consensus        98 gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (338)
T 3itj_A           98 GTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLA  177 (338)
T ss_dssp             TCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEE
T ss_pred             CCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEE
Confidence            567777777777643    2333   36678999999999999977766543211      111111122  34678999


Q ss_pred             EEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCe-EEEcCC
Q 046865          141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSD-TYLTST  218 (369)
Q Consensus       141 vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~-~v~~~~  218 (369)
                      |+|+|++|+|+|..|.+  .+.+|+++++.+.+++      .+.+.+.+.+. ||++++++.+.+++.+++.+ .+++.+
T Consensus       178 vvG~G~~g~e~a~~l~~--~g~~v~~v~~~~~~~~------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~  249 (338)
T 3itj_A          178 VIGGGDSACEEAQFLTK--YGSKVFMLVRKDHLRA------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKN  249 (338)
T ss_dssp             EECSSHHHHHHHHHHTT--TSSEEEEECSSSSCCS------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEE
T ss_pred             EECCCHHHHHHHHHHHh--cCCEEEEEEcCCccCC------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEE
Confidence            99999999999999984  4899999999987754      34556666555 99999999999987665433 255544


Q ss_pred             -----CcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEe-CCceeeccCCCeEEecccCCccccchhHHHHHHHH
Q 046865          219 -----GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMV-DENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQ  292 (369)
Q Consensus       219 -----g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~v-d~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~  292 (369)
                           ++++++|.||+|+|++|+++++.. +  +.++++|++.+ |+++++ +.|+|||+|||++.+ ++.+..|+.||+
T Consensus       250 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~--l~~~~~G~i~v~~~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~  324 (338)
T 3itj_A          250 TKKNEETDLPVSGLFYAIGHTPATKIVAG-Q--VDTDEAGYIKTVPGSSLT-SVPGFFAAGDVQDSK-YRQAITSAGSGC  324 (338)
T ss_dssp             TTTTEEEEEECSEEEECSCEEECCGGGBT-T--BCBCTTSCBCCCTTSSBC-SSTTEEECGGGGCSS-CCCHHHHHHHHH
T ss_pred             CCCCceEEEEeCEEEEEeCCCCChhHhhC-c--eEecCCCcEEEcCccccc-CCCCEEEeeccCCCC-ccceeeehhhhH
Confidence                 357999999999999999988876 4  46788999995 788887 799999999999753 356789999999


Q ss_pred             HHHHHHHHHhhCC
Q 046865          293 VAAKNLKVLMVGE  305 (369)
Q Consensus       293 ~~a~~i~~~~~g~  305 (369)
                      .||.||.+.|.++
T Consensus       325 ~aa~~i~~~l~~~  337 (338)
T 3itj_A          325 MAALDAEKYLTSL  337 (338)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.5e-37  Score=281.76  Aligned_cols=291  Identities=18%  Similarity=0.209  Sum_probs=201.0

Q ss_pred             Cccccccc-cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccc-cCCccc----cccee-cccc
Q 046865            1 MESQRQQQ-SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-VEPSFG----ERSVI-NHTD   72 (369)
Q Consensus         1 m~~~~~~~-~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~-~~~~~~----~~~~~-~~~~   72 (369)
                      |++++..+ ++.+++||+|||||++|+++|..|+ .|++|+|||++. .+..+...... ..+.+.    ...+. ...+
T Consensus         1 m~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   79 (335)
T 2a87_A            1 MTAPPVHDRAHHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGALMTTTDVENYPGFRNGITGPELMDEMRE   79 (335)
T ss_dssp             ---------CCCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHH
T ss_pred             CCCCCCCccccCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceeccchhhhcCCCCCCCCHHHHHHHHHH
Confidence            55555443 3345789999999999999999986 599999999763 33222111000 001111    01111 1111


Q ss_pred             cc--ccceEEEeeeeeeec---ceE-EecCCeEEeccEEEEccCCCCCCCCChHHHH------HHHHHHHHHHhcCCeEE
Q 046865           73 YL--VNGRIVASPAINITE---NEV-LTAEGRRVVYDYLVIATGHKDPVPKTRTERL------NQYQAENQKIKSARSIL  140 (369)
Q Consensus        73 ~~--~~~~~~~~~~~~~~~---~~v-~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~------~~~~~~~~~~~~~~~v~  140 (369)
                      +.  .+++++.+.+..++.   .++ .+.+++++.||+||+|||+.|..|+++....      ..+.........+++++
T Consensus        80 ~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~  159 (335)
T 2a87_A           80 QALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIA  159 (335)
T ss_dssp             HHHHTTCEEECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEE
T ss_pred             HHHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchhhcCCCEEE
Confidence            11  256777777766664   246 6677888999999999999988776653221      11112222335689999


Q ss_pred             EEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHH-HHHHhCCcEEEeCceeeeccCCCCCeEEEcC--
Q 046865          141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTL-DWLISKKVDVKLGQRVNLDSVSEGSDTYLTS--  217 (369)
Q Consensus       141 vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~-~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~--  217 (369)
                      |+|+|++|+|+|..|.+  .+.+|+++++.+++..  .    +.+. +.+++.||++++++.+.+++.+++...+.+.  
T Consensus       160 ViG~G~~g~e~a~~l~~--~g~~V~l~~~~~~~~~--~----~~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~  231 (335)
T 2a87_A          160 VIGGGDSAMEEATFLTR--FARSVTLVHRRDEFRA--S----KIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDT  231 (335)
T ss_dssp             EECSSHHHHHHHHHHTT--TCSEEEEECSSSSCSS--C----TTHHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEE
T ss_pred             EECCCHHHHHHHHHHHH--hCCeEEEEEcCCcCCc--c----HHHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEc
Confidence            99999999999999984  4899999999887642  1    2233 4456789999999999998765433234432  


Q ss_pred             -CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCce-eeccCCCeEEecccCCccccchhHHHHHHHHH
Q 046865          218 -TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENL-RVKGQKNIFAIGDITDIREIKQGFLAQKHAQV  293 (369)
Q Consensus       218 -~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l-~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~  293 (369)
                       +|  +++++|.||+|+|++|+++++. .+  +.++++|+|.||+++ ++ +.|+|||+|||++.+ ++++..|..||+.
T Consensus       232 ~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~--l~~~~~G~i~vd~~~~~t-~~~~iya~GD~~~~~-~~~~~~A~~~g~~  306 (335)
T 2a87_A          232 NTGAETTLPVTGVFVAIGHEPRSGLVR-EA--IDVDPDGYVLVQGRTTST-SLPGVFAAGDLVDRT-YRQAVTAAGSGCA  306 (335)
T ss_dssp             TTSCCEEECCSCEEECSCEEECCTTTB-TT--BCBCTTSCBCCSTTSSBC-SSTTEEECGGGTCCS-CCCHHHHHHHHHH
T ss_pred             CCCceEEeecCEEEEccCCccChhHhh-cc--cccCCCccEEeCCCCCcc-CCCCEEEeeecCCcc-HHHHHHHHHhHHH
Confidence             44  5799999999999999998876 23  367888999999975 55 899999999999864 3578899999999


Q ss_pred             HHHHHHHHhhCC
Q 046865          294 AAKNLKVLMVGE  305 (369)
Q Consensus       294 ~a~~i~~~~~g~  305 (369)
                      +|.||.+.+.+.
T Consensus       307 aA~~i~~~l~~~  318 (335)
T 2a87_A          307 AAIDAERWLAEH  318 (335)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcC
Confidence            999999988764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=2.6e-37  Score=282.54  Aligned_cols=287  Identities=16%  Similarity=0.191  Sum_probs=205.3

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc----ccCCccc---cccee-ccccccc--cceE
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA----MVEPSFG---ERSVI-NHTDYLV--NGRI   79 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~----~~~~~~~---~~~~~-~~~~~~~--~~~~   79 (369)
                      ..++||+|||||++|+++|+.|+ +|++|+|||+++.++..+.....    ...+.+.   ...+. ...+...  ++++
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVY   82 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEE
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence            34689999999999999999986 59999999999887654422100    0000110   00011 0111111  3444


Q ss_pred             E-Eeeeeeeecc----eEEecCCeEEeccEEEEccCCC---CCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCC
Q 046865           80 V-ASPAINITEN----EVLTAEGRRVVYDYLVIATGHK---DPVPKTRTER------LNQYQAENQKIKSARSILIVGGG  145 (369)
Q Consensus        80 ~-~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~---~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G  145 (369)
                      . ...+..++..    .+.+.++.++.||+||+|||+.   |..|+++...      +..... ......+++++|+|+|
T Consensus        83 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~-~~~~~~~~~v~viG~G  161 (335)
T 2zbw_A           83 SLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVK-SKAEFQGKRVLIVGGG  161 (335)
T ss_dssp             EESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCS-CGGGGTTCEEEEECSS
T ss_pred             EeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecC-chhhcCCCEEEEECCC
Confidence            3 3456665532    4666677789999999999994   5544432110      100000 0112357899999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC---CC--c
Q 046865          146 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS---TG--D  220 (369)
Q Consensus       146 ~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~  220 (369)
                      ++|+|+|..|.+  .+.+|+++++.+++++.  ++..+.+.+.+++.||++++++.+.+++.+++...+++.   +|  +
T Consensus       162 ~~g~e~a~~l~~--~g~~V~~v~~~~~~~~~--~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~  237 (335)
T 2zbw_A          162 DSAVDWALNLLD--TARRITLIHRRPQFRAH--EASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEEL  237 (335)
T ss_dssp             HHHHHHHHHTTT--TSSEEEEECSSSSCCSC--HHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEE
T ss_pred             HHHHHHHHHHHh--hCCEEEEEEcCCccCcc--HHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceE
Confidence            999999999974  48999999999877553  467788888899999999999999998764332245554   66  5


Q ss_pred             EEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc-ccchhHHHHHHHHHHHHHHH
Q 046865          221 TIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR-EIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       221 ~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~-~~~~~~~A~~~g~~~a~~i~  299 (369)
                      ++++|.+|+|+|++|+++++...++  .++ +|+|.||+++|+ +.|+|||+|||+..+ .+++++.|..||+++|+||.
T Consensus       238 ~i~~D~vi~a~G~~p~~~~l~~~~~--~~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  313 (335)
T 2zbw_A          238 ALEVDAVLILAGYITKLGPLANWGL--ALE-KNKIKVDTTMAT-SIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAA  313 (335)
T ss_dssp             EEECSEEEECCCEEEECGGGGGSCC--CEE-TTEEECCTTCBC-SSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCEEEEeecCCCCchHhhhcce--ecc-CCeeeeCCCCCC-CCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHH
Confidence            7999999999999999988776544  454 689999999997 799999999999654 24578899999999999999


Q ss_pred             HHhhCCC
Q 046865          300 VLMVGER  306 (369)
Q Consensus       300 ~~~~g~~  306 (369)
                      ..+.+..
T Consensus       314 ~~l~~~~  320 (335)
T 2zbw_A          314 AYANPAL  320 (335)
T ss_dssp             HHHCTTS
T ss_pred             HHhhhhh
Confidence            9987754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=2.4e-36  Score=273.18  Aligned_cols=278  Identities=20%  Similarity=0.231  Sum_probs=199.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc---ccccCCcc-ccccee-cccccc--ccceEEEe-e
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RAMVEPSF-GERSVI-NHTDYL--VNGRIVAS-P   83 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~---~~~~~~~~-~~~~~~-~~~~~~--~~~~~~~~-~   83 (369)
                      ++||+|||||++|+++|..|+ .|++|+|||+.  .+..+...   ..+..... ....+. ...+++  .+++++.+ +
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQS   78 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC--CCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCE
Confidence            479999999999999999997 49999999864  33222111   00101000 000011 111111  25677766 6


Q ss_pred             eeeeec-------ceEEecCCeEEeccEEEEccCCCCCCCCChHH------HHHHHHHHHHHHhcCCeEEEEcCChhHHH
Q 046865           84 AINITE-------NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVE  150 (369)
Q Consensus        84 ~~~~~~-------~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~vvG~G~~g~e  150 (369)
                      +..++.       ..+.+.+++++.||+||+|||+.|..|+++..      .+..+.........+++++|+|+|++|+|
T Consensus        79 v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e  158 (310)
T 1fl2_A           79 ASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVE  158 (310)
T ss_dssp             EEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHH
T ss_pred             EEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHH
Confidence            777753       25667778889999999999998665543211      11111122233456899999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe-EEEcC---CCc--EEe
Q 046865          151 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD-TYLTS---TGD--TIK  223 (369)
Q Consensus       151 ~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~i~  223 (369)
                      +|..|.+  .+.+|+++++.+++.  ++    +.+.+.+++ .||++++++.+.++..+++.+ .+++.   +|+  +++
T Consensus       159 ~A~~l~~--~g~~Vtlv~~~~~~~--~~----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~  230 (310)
T 1fl2_A          159 AAIDLAG--IVEHVTLLEFAPEMK--AD----QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIE  230 (310)
T ss_dssp             HHHHHHT--TBSEEEEECSSSSCC--SC----HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEE
T ss_pred             HHHHHHH--hCCEEEEEEeCcccC--cc----HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEE
Confidence            9999984  489999999998762  22    455666777 699999999999987654433 34443   353  689


Q ss_pred             ccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865          224 ADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       224 ~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      +|.||+|+|++||++++...   +.++++|+|.||+++|| +.|+|||+|||+..+. ++...|+.||+.+|.||.+.+.
T Consensus       231 ~D~vi~a~G~~p~~~~l~~~---l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~~-~~~~~A~~~g~~aa~~i~~~l~  305 (310)
T 1fl2_A          231 LAGIFVQIGLLPNTNWLEGA---VERNRMGEIIIDAKCET-NVKGVFAAGDCTTVPY-KQIIIATGEGAKASLSAFDYLI  305 (310)
T ss_dssp             CSEEEECSCEEESCGGGTTT---SCBCTTSCBCCCTTCBC-SSTTEEECSTTBSCSS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeeCCccCchHHhcc---ccccCCCcEEcCCCCcc-CCCCEEEeecccCCcc-hhhhhhHhhHHHHHHHHHHHHH
Confidence            99999999999999888652   36788899999999997 7999999999998653 4678999999999999999887


Q ss_pred             CC
Q 046865          304 GE  305 (369)
Q Consensus       304 g~  305 (369)
                      ++
T Consensus       306 ~~  307 (310)
T 1fl2_A          306 RT  307 (310)
T ss_dssp             HS
T ss_pred             Hh
Confidence            64

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=2.1e-36  Score=279.37  Aligned_cols=286  Identities=20%  Similarity=0.199  Sum_probs=204.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc----ccCCcccc---ccee-cccccc--ccceEE
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA----MVEPSFGE---RSVI-NHTDYL--VNGRIV   80 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~----~~~~~~~~---~~~~-~~~~~~--~~~~~~   80 (369)
                      .++||+|||||++|+++|..|+ +|++|+|||+++.++..+.....    ...+.+..   ..+. ...+..  .++++.
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   92 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVV   92 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEE
Confidence            4689999999999999999986 59999999999877654422100    00011110   0000 001111  134554


Q ss_pred             E-eeeeeeecc-----eEEecCCeEEeccEEEEccCCC---CCCCCChH--HHHH-----HHHHHHHHHhcCCeEEEEcC
Q 046865           81 A-SPAINITEN-----EVLTAEGRRVVYDYLVIATGHK---DPVPKTRT--ERLN-----QYQAENQKIKSARSILIVGG  144 (369)
Q Consensus        81 ~-~~~~~~~~~-----~v~~~~g~~~~~d~lviAtG~~---~~~p~~~~--~~~~-----~~~~~~~~~~~~~~v~vvG~  144 (369)
                      . ..+..++..     .+.+.+++++.||+||+|||+.   |..|+++.  ..+.     .... ......+++++|+|+
T Consensus        93 ~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~-~~~~~~~~~vvVvG~  171 (360)
T 3ab1_A           93 LNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVK-SVEDFKGKRVVIVGG  171 (360)
T ss_dssp             CSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCS-CGGGGTTCEEEEECS
T ss_pred             cCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecC-CHHHcCCCcEEEECC
Confidence            3 355555532     5677778889999999999994   44443322  1110     0000 011135789999999


Q ss_pred             ChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc--CCC--
Q 046865          145 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT--STG--  219 (369)
Q Consensus       145 G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g--  219 (369)
                      |++|+|+|..|.+  .+.+|+++++.+.+.+.  ++..+.+.+.+++.||+++++++|.+++.+++.+ .+++  .+|  
T Consensus       172 G~~g~e~A~~l~~--~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~  247 (360)
T 3ab1_A          172 GDSALDWTVGLIK--NAASVTLVHRGHEFQGH--GKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSK  247 (360)
T ss_dssp             SHHHHHHHHHTTT--TSSEEEEECSSSSCSSC--SHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCE
T ss_pred             CHHHHHHHHHHHh--cCCEEEEEEcCCCCCCC--HHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCe
Confidence            9999999999974  48999999999877653  4667778888889999999999999987654432 3444  367  


Q ss_pred             cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc-ccchhHHHHHHHHHHHHHH
Q 046865          220 DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR-EIKQGFLAQKHAQVAAKNL  298 (369)
Q Consensus       220 ~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~-~~~~~~~A~~~g~~~a~~i  298 (369)
                      +++++|.||+|+|++|+++++...++  .++ +|+|.||+++|| +.|+|||+|||+..+ .++++..|..||+++|+||
T Consensus       248 ~~i~~D~vi~a~G~~p~~~~l~~~~~--~~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i  323 (360)
T 3ab1_A          248 WTVEADRLLILIGFKSNLGPLARWDL--ELY-ENALVVDSHMKT-SVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHS  323 (360)
T ss_dssp             EEEECSEEEECCCBCCSCGGGGGSSC--CEE-TTEEECCTTSBC-SSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCEEEECCCCCCCHHHHHhhcc--ccc-cCeeeecCCCcC-CCCCEEEecCccCCCCccceeehhHHHHHHHHHHH
Confidence            57999999999999999988876544  455 689999999998 799999999999754 3567889999999999999


Q ss_pred             HHHhhCCC
Q 046865          299 KVLMVGER  306 (369)
Q Consensus       299 ~~~~~g~~  306 (369)
                      ...+.+..
T Consensus       324 ~~~l~~~~  331 (360)
T 3ab1_A          324 LSYIKPGE  331 (360)
T ss_dssp             HHHHSCC-
T ss_pred             HhhcCCcc
Confidence            99887654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=2.6e-36  Score=275.33  Aligned_cols=280  Identities=18%  Similarity=0.216  Sum_probs=201.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc-c---ccCCccc---cccee-cccccc--ccceEE-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-A---MVEPSFG---ERSVI-NHTDYL--VNGRIV-   80 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~-~---~~~~~~~---~~~~~-~~~~~~--~~~~~~-   80 (369)
                      ++||+|||||++|+++|+.|+ +|++|+|||+++.++..|.... .   ...+.+.   ...+. ...+..  .++++. 
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL   86 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc
Confidence            589999999999999999986 5999999999988775442110 0   0011111   01111 111111  145555 


Q ss_pred             Eeeeeeeecc-----eEEecCCeEEeccEEEEccCC---CCCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCCh
Q 046865           81 ASPAINITEN-----EVLTAEGRRVVYDYLVIATGH---KDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGP  146 (369)
Q Consensus        81 ~~~~~~~~~~-----~v~~~~g~~~~~d~lviAtG~---~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G~  146 (369)
                      ..++..++..     .+.+.+++ +.||+||+|||+   .|..|.++...      +.. .........+++++|+|+|+
T Consensus        87 ~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~  164 (332)
T 3lzw_A           87 EQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGD  164 (332)
T ss_dssp             SCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSH
T ss_pred             cCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCH
Confidence            3566666532     56666665 999999999999   66655443211      111 00011123478999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC-----CcE
Q 046865          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST-----GDT  221 (369)
Q Consensus       147 ~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-----g~~  221 (369)
                      +|+|+|..|.+  .+.+|+++++.+++.+.      ....+.|++.||++++++.+.+++.+++...+++.+     +++
T Consensus       165 ~~~e~a~~l~~--~~~~v~~~~~~~~~~~~------~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~  236 (332)
T 3lzw_A          165 SAVDWALMLEP--IAKEVSIIHRRDKFRAH------EHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEI  236 (332)
T ss_dssp             HHHHHHHHHTT--TBSEEEEECSSSSCSSC------HHHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEE
T ss_pred             hHHHHHHHHHh--hCCeEEEEEecCcCCcc------HHHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEE
Confidence            99999999984  48899999999876432      223455788999999999999988665555565544     357


Q ss_pred             EeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc-ccchhHHHHHHHHHHHHHHHH
Q 046865          222 IKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR-EIKQGFLAQKHAQVAAKNLKV  300 (369)
Q Consensus       222 i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~-~~~~~~~A~~~g~~~a~~i~~  300 (369)
                      +++|.||+|+|++|+++++...++  .+ ++|+|.||+++|| +.|+|||+|||+..+ .++++..|..||+.+|.||.+
T Consensus       237 ~~~D~vv~a~G~~p~~~~~~~~~~--~~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~  312 (332)
T 3lzw_A          237 LEIDDLIVNYGFVSSLGPIKNWGL--DI-EKNSIVVKSTMET-NIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKA  312 (332)
T ss_dssp             EECSEEEECCCEECCCGGGGGSSC--CE-ETTEEECCTTSBC-SSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCEEEEeeccCCCchHHhhcCc--cc-cCCeEEeCCCCce-ecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHH
Confidence            999999999999999998776555  44 6799999999998 799999999998653 456789999999999999999


Q ss_pred             HhhCCC
Q 046865          301 LMVGER  306 (369)
Q Consensus       301 ~~~g~~  306 (369)
                      .+.+..
T Consensus       313 ~l~~~~  318 (332)
T 3lzw_A          313 YMDPKA  318 (332)
T ss_dssp             HHCTTS
T ss_pred             hhChhh
Confidence            987653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=6.2e-36  Score=273.20  Aligned_cols=281  Identities=17%  Similarity=0.208  Sum_probs=197.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcC----CCCccccccccccc-cCCcccc----ccee-cccccc--ccce
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP----KEYFEITWASLRAM-VEPSFGE----RSVI-NHTDYL--VNGR   78 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~----~~~~~~~~~~~~~~-~~~~~~~----~~~~-~~~~~~--~~~~   78 (369)
                      .++||+|||||++|+++|+.|+ .|++|+|||+    ....+..+...... ..+.+..    ..+. ...+..  .+++
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~   86 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   86 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCE
Confidence            3589999999999999999997 5999999998    33333222111000 0011110    0010 011111  2567


Q ss_pred             EEEeeeeeeecc----eEEecCCeEEeccEEEEccCCCCCCCCChHH----------HHHHHHHHHHHH--hcCCeEEEE
Q 046865           79 IVASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE----------RLNQYQAENQKI--KSARSILIV  142 (369)
Q Consensus        79 ~~~~~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~----------~~~~~~~~~~~~--~~~~~v~vv  142 (369)
                      ++.+++..++..    ++.+ ++.++.||+||+|||+.|..|+++..          .+..+.......  ..+++++|+
T Consensus        87 ~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv  165 (333)
T 1vdc_A           87 IFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVI  165 (333)
T ss_dssp             EECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEE
T ss_pred             EEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEE
Confidence            777777777642    4555 77889999999999998765543211          111111111222  567999999


Q ss_pred             cCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHH-HHHHhCCcEEEeCceeeeccCCCC--Ce-EEEcC-
Q 046865          143 GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTL-DWLISKKVDVKLGQRVNLDSVSEG--SD-TYLTS-  217 (369)
Q Consensus       143 G~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~-~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~-  217 (369)
                      |+|.+|+|+|..|.+  .+.+|+++++.+.+..      .+.+. +.+++.||++++++.+.+++.+++  .+ .+.+. 
T Consensus       166 G~G~~g~e~A~~l~~--~g~~V~lv~~~~~~~~------~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~  237 (333)
T 1vdc_A          166 GGGDSAMEEANFLTK--YGSKVYIIHRRDAFRA------SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKN  237 (333)
T ss_dssp             CCSHHHHHHHHHHTT--TSSEEEEECSSSSCCS------CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEE
T ss_pred             CCChHHHHHHHHHHh--cCCeEEEEecCCcCCc------cHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEe
Confidence            999999999999974  4899999999887632      23343 445778999999999999876543  32 24443 


Q ss_pred             --CC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCce-eeccCCCeEEecccCCccccchhHHHHHHHH
Q 046865          218 --TG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENL-RVKGQKNIFAIGDITDIREIKQGFLAQKHAQ  292 (369)
Q Consensus       218 --~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l-~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~  292 (369)
                        +|  +++++|.||+|+|++|+++++.. +  +.++++|+|.||+++ +| +.|+|||+|||++.+ ++++..|..||+
T Consensus       238 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~--l~~~~~G~i~vd~~~~~t-~~~~vya~GD~~~~~-~~~~~~A~~~g~  312 (333)
T 1vdc_A          238 VVTGDVSDLKVSGLFFAIGHEPATKFLDG-G--VELDSDGYVVTKPGTTQT-SVPGVFAAGDVQDKK-YRQAITAAGTGC  312 (333)
T ss_dssp             TTTCCEEEEECSEEEECSCEEESCGGGTT-S--SCBCTTSCBCCCTTSCBC-SSTTEEECGGGGCSS-CCCHHHHHHHHH
T ss_pred             cCCCceEEEecCEEEEEeCCccchHHhhc-c--ccccCCCCEEechhhccc-CCCCEEEeeeccCCC-chhHHHHHHhHH
Confidence              45  57999999999999999988762 3  367788999999985 65 799999999999864 357889999999


Q ss_pred             HHHHHHHHHhhCCC
Q 046865          293 VAAKNLKVLMVGER  306 (369)
Q Consensus       293 ~~a~~i~~~~~g~~  306 (369)
                      .||.||.+.+.+.+
T Consensus       313 ~aa~~i~~~l~~~~  326 (333)
T 1vdc_A          313 MAALDAEHYLQEIG  326 (333)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=6e-35  Score=270.38  Aligned_cols=294  Identities=17%  Similarity=0.233  Sum_probs=196.7

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCCCccccccccc---cccCCccc------------------------
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWASLR---AMVEPSFG------------------------   63 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~~~~~~~~~~~---~~~~~~~~------------------------   63 (369)
                      ++||+|||||++|+++|+.|+ .|. +|+|||+++ ++..|....   ....+.+.                        
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   82 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE   82 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence            589999999999999999997 588 999999987 443221100   00000000                        


Q ss_pred             ---c-cceecc-cccc--ccceEEEe-eeeeeecc----eEEecCCeEEeccEEEEccCCC--CCCCCChHHHHHHHHHH
Q 046865           64 ---E-RSVINH-TDYL--VNGRIVAS-PAINITEN----EVLTAEGRRVVYDYLVIATGHK--DPVPKTRTERLNQYQAE  129 (369)
Q Consensus        64 ---~-~~~~~~-~~~~--~~~~~~~~-~~~~~~~~----~v~~~~g~~~~~d~lviAtG~~--~~~p~~~~~~~~~~~~~  129 (369)
                         . ..+..+ ..+.  .+++++.+ .+..++..    .|.+.++ ++.||+||+|||+.  |.+|+ . ..++ ....
T Consensus        83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~p~ip~-~-~~~~-~~~~  158 (369)
T 3d1c_A           83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNFPKKPF-K-YGIH-YSEI  158 (369)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTSBCCCS-S-SCEE-GGGC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCccCCCC-C-ceec-hhhc
Confidence               0 000000 1111  14566554 46656543    4555555 68999999999997  45554 0 0000 0001


Q ss_pred             HH-HHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CCcchHHHHHHHHHhCC-cEEEeCc
Q 046865          130 NQ-KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGPKAGDKTLDWLISKK-VDVKLGQ  200 (369)
Q Consensus       130 ~~-~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~~~~~~~~~~~l~~~g-v~i~~~~  200 (369)
                      .. .....++++|+|+|++|+|+|..|.+  .+.+|+++++.+.+++.       +++.+.+.+.+.+++.| |++++++
T Consensus       159 ~~~~~~~~~~vvVvG~G~~g~e~a~~l~~--~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~  236 (369)
T 3d1c_A          159 EDFDNFNKGQYVVIGGNESGFDAAYQLAK--NGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHY  236 (369)
T ss_dssp             SCGGGSCSSEEEEECCSHHHHHHHHHHHH--TTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CChhhcCCCEEEEECCCcCHHHHHHHHHh--cCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCc
Confidence            11 11245799999999999999999985  38999999999887742       44566788889999997 9999999


Q ss_pred             eeeeccCCCCCeEEEcCCCcEEe-ccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc
Q 046865          201 RVNLDSVSEGSDTYLTSTGDTIK-ADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR  279 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~i~-~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~  279 (369)
                      .|.+++.+++...+++.+|+++. +|.+|+|+|++|+++++....+  . +++|++.||++++.++.|+|||+|||+..+
T Consensus       237 ~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~--~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~  313 (369)
T 3d1c_A          237 TVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLF--V-TTNQDIKLTTHDESTRYPNIFMIGATVEND  313 (369)
T ss_dssp             CEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHS--C-CTTSCCCBCTTSBBSSSTTEEECSTTCCCS
T ss_pred             EEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhc--c-CCCCCEEechhhcccCCCCeEEeccccccC
Confidence            99988654555667788887775 5999999999999976664443  3 678999999876555899999999999865


Q ss_pred             ccch--hHHHHHHHHHHHHHHHHHhhCCCc-cccccccCC
Q 046865          280 EIKQ--GFLAQKHAQVAAKNLKVLMVGERE-SKMATYWPH  316 (369)
Q Consensus       280 ~~~~--~~~A~~~g~~~a~~i~~~~~g~~~-~~~~~~~~~  316 (369)
                      ....  .+.+.+||+++|+||...+..... ..+..|.|+
T Consensus       314 ~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~~~~~~  353 (369)
T 3d1c_A          314 NAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKN  353 (369)
T ss_dssp             SCCCCSHHHHGGGHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred             CeeEEEEehhhHHHHHHHHHHhcccCCCCcchHHHHHHhc
Confidence            4332  346778999999999876653221 133455543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=1.3e-34  Score=279.08  Aligned_cols=280  Identities=20%  Similarity=0.231  Sum_probs=201.1

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc---ccccC-Cccccccee-cccccc--ccceEEEe
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RAMVE-PSFGERSVI-NHTDYL--VNGRIVAS   82 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~---~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~~   82 (369)
                      ...+||+|||||+||+++|..|+ +|.+|+|||+.  ++..+...   ..+.. +......+. .....+  .+++++.+
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~  287 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDS  287 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcC
Confidence            45789999999999999999986 59999999974  33322211   00100 000000010 011111  25677766


Q ss_pred             -eeeeeec-------ceEEecCCeEEeccEEEEccCCCCCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCChhH
Q 046865           83 -PAINITE-------NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTG  148 (369)
Q Consensus        83 -~~~~~~~-------~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G~~g  148 (369)
                       ++..++.       ..+.+.+|.++.||++|+|||+.|..|+++...      +..+.........+++++|+|+|++|
T Consensus       288 ~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g  367 (521)
T 1hyu_A          288 QSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSG  367 (521)
T ss_dssp             CCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHH
T ss_pred             CEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHH
Confidence             6777753       256777888999999999999986655433210      00000111123468999999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe-EEEcC---CCc--E
Q 046865          149 VELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD-TYLTS---TGD--T  221 (369)
Q Consensus       149 ~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~  221 (369)
                      +|+|..|+..  +.+|+++++.+++...      ..+.+.+++ .||++++++.++++..+++.+ .+.+.   +|+  +
T Consensus       368 ~E~A~~L~~~--g~~Vtlv~~~~~l~~~------~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~  439 (521)
T 1hyu_A          368 VEAAIDLAGI--VEHVTLLEFAPEMKAD------QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHS  439 (521)
T ss_dssp             HHHHHHHHHH--BSEEEEECSSSSCCSC------HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEE
T ss_pred             HHHHHHHHhh--CCEEEEEEeCcccCcC------HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEE
Confidence            9999999864  8999999998876531      456677777 699999999999987654443 34443   354  6


Q ss_pred             EeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHH
Q 046865          222 IKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       222 i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~  301 (369)
                      +++|.|++++|++||++++.. .  +.++++|+|.||+++|| +.|+|||+|||++.+. ++...|+.+|+.||.||...
T Consensus       440 i~~D~vi~a~G~~pn~~~l~~-~--l~~~~~G~I~Vd~~~~t-s~p~VfA~GD~~~~~~-~~~~~A~~~g~~aa~~i~~~  514 (521)
T 1hyu_A          440 VALAGIFVQIGLLPNTHWLEG-A--LERNRMGEIIIDAKCET-SVKGVFAAGDCTTVPY-KQIIIATGEGAKASLSAFDY  514 (521)
T ss_dssp             EECSEEEECCCEEESCGGGTT-T--SCBCTTSCBCCCTTCBC-SSTTEEECSTTBCCSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCEEEECcCCCCCchHHhh-h--hccCCCCcEEeCCCCCC-CCCCEEEeecccCCCc-ceeeehHHhHHHHHHHHHHH
Confidence            899999999999999998875 2  36788899999999998 7999999999998753 57889999999999999988


Q ss_pred             hhCC
Q 046865          302 MVGE  305 (369)
Q Consensus       302 ~~g~  305 (369)
                      +.+.
T Consensus       515 L~~~  518 (521)
T 1hyu_A          515 LIRT  518 (521)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=7e-34  Score=261.67  Aligned_cols=278  Identities=17%  Similarity=0.185  Sum_probs=183.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccccc----------CCcccc----------cceecc-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV----------EPSFGE----------RSVINH-   70 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~----------~~~~~~----------~~~~~~-   70 (369)
                      ++||+|||||++|+++|..|+ .|++|+|||+++.++..|.......          .+.+..          ..+..+ 
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYL   82 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHH
Confidence            589999999999999999996 5999999999987765543210000          000000          000000 


Q ss_pred             cccc--ccceEEE-eeeeeeecc----e-EEecCCeEEeccEEEEccCC--CCCCCCChHHH------HHHHHHHHHHHh
Q 046865           71 TDYL--VNGRIVA-SPAINITEN----E-VLTAEGRRVVYDYLVIATGH--KDPVPKTRTER------LNQYQAENQKIK  134 (369)
Q Consensus        71 ~~~~--~~~~~~~-~~~~~~~~~----~-v~~~~g~~~~~d~lviAtG~--~~~~p~~~~~~------~~~~~~~~~~~~  134 (369)
                      ..+.  .++++.. .++..++..    . +.+.++ ++.||+||+|||.  .|.+|.++...      +...........
T Consensus        83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  161 (357)
T 4a9w_A           83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPF  161 (357)
T ss_dssp             HHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGG
T ss_pred             HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCChhhc
Confidence            0000  1345543 355555532    3 666666 8999999999995  45455432110      011110111223


Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC-ccccccC--CcchHHHHHHHHH---------------------
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRLLEFI--GPKAGDKTLDWLI---------------------  190 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~-~~~l~~~--~~~~~~~~~~~l~---------------------  190 (369)
                      .+++++|+|+|++|+|+|..|.+.  + +|+++.+. +.+++..  .+.+.+.+.+.+.                     
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~--~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTV--A-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMV  238 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTT--S-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhh--C-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccC
Confidence            578999999999999999999853  4 69999988 4555532  2233333333222                     


Q ss_pred             -------hCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc--e
Q 046865          191 -------SKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN--L  261 (369)
Q Consensus       191 -------~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~--l  261 (369)
                             +.|+ +..+..+.+++.    ..+.+.+|+++++|.||+|+|++|+++++...++  . +++|+|.||++  +
T Consensus       239 ~~~~~~~~~g~-i~~~~~v~~~~~----~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl--~-~~~G~i~vd~~~l~  310 (357)
T 4a9w_A          239 PPVLDARARGV-LAAVPPPARFSP----TGMQWADGTERAFDAVIWCTGFRPALSHLKGLDL--V-TPQGQVEVDGSGLR  310 (357)
T ss_dssp             HHHHHHHHTTC-CCEECCCSEEET----TEEECTTSCEEECSEEEECCCBCCCCGGGTTTTC--B-CTTSCBCBCTTSCB
T ss_pred             hhHHHHHhcCc-eEEecCcceEeC----CeeEECCCCEecCCEEEECCCcCCCCcccCcccc--c-CCCCCccccCCccc
Confidence                   3344 444555555542    2478889999999999999999999999877655  4 78899999999  6


Q ss_pred             eeccCCCeEEec--ccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          262 RVKGQKNIFAIG--DITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       262 ~~~~~~~i~a~G--D~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ++ +.|||||+|  ||++ +.+++...|..||+.+|+||.+.+.|
T Consensus       311 ~t-~~~~vya~Gd~d~~~-~~~~~~~~A~~~g~~~a~~i~~~l~g  353 (357)
T 4a9w_A          311 AL-AVPSVWLLGYGDWNG-MASATLIGVTRYAREAVRQVTAYCAD  353 (357)
T ss_dssp             BS-SCTTEEECSSCGGGS-TTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred             CC-CCCCeEEeccccccc-cchhhhhhhHHHHHHHHHHHHHHHHh
Confidence            66 899999999  5665 33456778999999999999999887

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=9.7e-35  Score=274.67  Aligned_cols=276  Identities=16%  Similarity=0.130  Sum_probs=186.6

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc-cccccCCcccccceecccccc--ccceEEEeeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGERSVINHTDYL--VNGRIVASPAIN   86 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (369)
                      ...+||+|||||+||+++|..|+ .|++|+|||+++.++..+.. +..+   ...........+++  .+++++.+..+.
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~---~~~~~~~~~~~~~l~~~gv~~~~~~~v~  196 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGF---KLEKSVVERRVKLLADAGVIYHPNFEVG  196 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTT---TSCHHHHHHHHHHHHHTTCEEETTCCBT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCc---cCCHHHHHHHHHHHHHCCcEEEeCCEec
Confidence            45689999999999999999997 49999999999877643211 1111   01111111111221  145665544332


Q ss_pred             eecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHHH---HHHHHHHH---------------HHhcCCeEEEEcC
Q 046865           87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERL---NQYQAENQ---------------KIKSARSILIVGG  144 (369)
Q Consensus        87 ~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~~---~~~~~~~~---------------~~~~~~~v~vvG~  144 (369)
                         ..+.++++ .+.||+|++|||+. |.   +|+.....+   .++.....               ....+++++|||+
T Consensus       197 ---~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGg  272 (456)
T 2vdc_G          197 ---RDASLPEL-RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGG  272 (456)
T ss_dssp             ---TTBCHHHH-HSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECS
T ss_pred             ---cEEEhhHh-HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECC
Confidence               12222222 36799999999996 33   444321111   11111100               0134689999999


Q ss_pred             ChhHHHHHHHHhhhCCCC-eEEEEEcCccc-cccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC--CeEEE---c-
Q 046865          145 GPTGVELAGEIAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG--SDTYL---T-  216 (369)
Q Consensus       145 G~~g~e~a~~l~~~~~~~-~v~lv~~~~~~-l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~~~v~---~-  216 (369)
                      |.+|+|+|..+.+  .+. +|++++|.++. ++..+.+     .+.+++.||++++++.+.++..++.  .+.+.   + 
T Consensus       273 G~~a~d~A~~~~r--~Ga~~Vtiv~r~~~~~~p~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~  345 (456)
T 2vdc_G          273 GDTAMDCVRTAIR--QGATSVKCLYRRDRKNMPGSQRE-----VAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLG  345 (456)
T ss_dssp             SHHHHHHHHHHHH--TTCSEEEEECSSCSTTCSSCHHH-----HHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEE
T ss_pred             ChhHHHHHHHHHH--cCCCEEEEEEeCCccCCCCCHHH-----HHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEec
Confidence            9999999998874  355 69999998875 4543322     3567788999999998887754221  12221   1 


Q ss_pred             ---C---------CC--cEEeccEEEEcCCCCCCch--hhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCcc
Q 046865          217 ---S---------TG--DTIKADCHFLCTGKPVGSD--WLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIR  279 (369)
Q Consensus       217 ---~---------~g--~~i~~d~vi~a~G~~p~~~--~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~  279 (369)
                         .         +|  .++++|.||+|+|+.|++.  ++...+  +.++++|+|.||++ +|| +.|+|||+|||+..+
T Consensus       346 ~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~g--l~~~~~G~i~vd~~~~~T-s~~~VfA~GD~~~g~  422 (456)
T 2vdc_G          346 VADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPE--LKVTRWGTLLVDHRTKMT-NMDGVFAAGDIVRGA  422 (456)
T ss_dssp             EEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTT--SCBCTTSSBCCCTTTCBC-SSTTEEECGGGGSSC
T ss_pred             ccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCC--eeECCCCCEEECCCCCcC-CCCCEEEeccccCCc
Confidence               1         23  4789999999999999876  565444  46788999999998 997 799999999998764


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865          280 EIKQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       280 ~~~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                        ++...|+.||+.||.||...+.++
T Consensus       423 --~~v~~A~~~G~~aA~~i~~~L~~~  446 (456)
T 2vdc_G          423 --SLVVWAIRDGRDAAEGIHAYAKAK  446 (456)
T ss_dssp             --CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHHHHhhcC
Confidence              478999999999999999998774

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.98  E-value=6.7e-32  Score=257.48  Aligned_cols=288  Identities=16%  Similarity=0.189  Sum_probs=186.6

Q ss_pred             CcceEEEECCChHHHHHHHHccc-C-----CcEEEEcCCCCcccccccccc--cc------------CCcccc-------
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-S-----ADVTLIDPKEYFEITWASLRA--MV------------EPSFGE-------   64 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g-----~~V~lie~~~~~~~~~~~~~~--~~------------~~~~~~-------   64 (369)
                      ..+||||||||++|+++|..|++ |     .+|+|||+++.+++....+..  .+            .+....       
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~  108 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH  108 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence            35699999999999999999874 6     899999999987743322100  00            000000       


Q ss_pred             ------------------cceecccccc-c--cceEEE-eeeeeeecc---------eEEecCCe----EEeccEEEEcc
Q 046865           65 ------------------RSVINHTDYL-V--NGRIVA-SPAINITEN---------EVLTAEGR----RVVYDYLVIAT  109 (369)
Q Consensus        65 ------------------~~~~~~~~~~-~--~~~~~~-~~~~~~~~~---------~v~~~~g~----~~~~d~lviAt  109 (369)
                                        ..+..+..++ .  +.++.. .++..++..         .|.+.++.    ++.||+||+||
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAt  188 (463)
T 3s5w_A          109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSP  188 (463)
T ss_dssp             HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECC
T ss_pred             hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECC
Confidence                              0000000000 0  233433 335555432         45555554    89999999999


Q ss_pred             CCCCCCCCC-h---H--HHHH--HHHHHHHHH----hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC
Q 046865          110 GHKDPVPKT-R---T--ERLN--QYQAENQKI----KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI  177 (369)
Q Consensus       110 G~~~~~p~~-~---~--~~~~--~~~~~~~~~----~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~  177 (369)
                      |+.|.+|+. +   .  ..+.  .+......+    ..+++++|||+|.+|+|+|..|.+.+++.+|++++|.+.++|..
T Consensus       189 G~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~  268 (463)
T 3s5w_A          189 GGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPAD  268 (463)
T ss_dssp             CCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCC
T ss_pred             CCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCcc
Confidence            999888862 1   1  0011  111111111    25789999999999999999999877799999999999876522


Q ss_pred             --------------------CcchHHHHHHHHHh--------------------------CCcEEEeCceeeeccCCCCC
Q 046865          178 --------------------GPKAGDKTLDWLIS--------------------------KKVDVKLGQRVNLDSVSEGS  211 (369)
Q Consensus       178 --------------------~~~~~~~~~~~l~~--------------------------~gv~i~~~~~v~~i~~~~~~  211 (369)
                                          +++....+.+.+..                          .||++++++.|++++.+++.
T Consensus       269 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~  348 (463)
T 3s5w_A          269 DSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQG  348 (463)
T ss_dssp             CCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTE
T ss_pred             CCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCE
Confidence                                22222223332222                          69999999999998876666


Q ss_pred             eEEEcC---CCc--EEeccEEEEcCCCCCC--chhhcccccCCCCCCCCcEEeCCceeecc----CCCeEEecccCCc--
Q 046865          212 DTYLTS---TGD--TIKADCHFLCTGKPVG--SDWLKDTILKDSLDTDGMLMVDENLRVKG----QKNIFAIGDITDI--  278 (369)
Q Consensus       212 ~~v~~~---~g~--~i~~d~vi~a~G~~p~--~~~l~~~~~~~~~~~~g~i~vd~~l~~~~----~~~i~a~GD~~~~--  278 (369)
                      +.+++.   +|+  ++++|.||+|||++|+  ++++.....  .+   |++.||+++|+..    .|+|||+|||...  
T Consensus       349 ~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~--~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g  423 (463)
T 3s5w_A          349 IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAE--YL---GDHEIGRDYRLQTDERCKVAIYAQGFSQASHG  423 (463)
T ss_dssp             EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGG--GB---C--CCCTTSBCCBCTTBCSEEEESSCCHHHHC
T ss_pred             EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHH--Hh---CCcccCcccccccCCCCCCeEEEcCCCcccCC
Confidence            666665   665  4999999999999998  666654332  22   7899999999854    4569999998753  


Q ss_pred             -cccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          279 -REIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       279 -~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                       ..+.....|.+++++++..+.+...+
T Consensus       424 ~~~~~l~~~a~r~~~i~~~~~~~~~~~  450 (463)
T 3s5w_A          424 LSDTLLSVLPVRAEEISGSLYQHLKPG  450 (463)
T ss_dssp             TTTTSSTTHHHHHHHHHHHHHHHHC--
T ss_pred             cCccchhHHHHHHHHHHHHHHhhcCCc
Confidence             22345678999999887777655433

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.97  E-value=2.3e-32  Score=258.77  Aligned_cols=278  Identities=14%  Similarity=0.081  Sum_probs=185.8

Q ss_pred             cceEEEECCChHHHHHHHHccc--------CCcEEEEcCCCCccccccccccccCCccc--ccceecccccc--ccceEE
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF--------SADVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTDYL--VNGRIV   80 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~--------g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~   80 (369)
                      ++||+|||||+||++||..|.+        +.+|+|||+++.++..+.   ..+.+...  ......+..++  .+++++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~---~gv~p~~~~~~~~~~~~~~~~~~~~v~~~   79 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR---SGVAPDHPKIKSISKQFEKTAEDPRFRFF   79 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH---HTSCTTCTGGGGGHHHHHHHHTSTTEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc---cccCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            5799999999999999998865        899999999977653321   11111111  11111111222  246666


Q ss_pred             EeeeeeeecceEEecCCeEEeccEEEEccCCC-CC---CCCChHHH---HHHHHHHH-------HHH--hcCCeEEEEcC
Q 046865           81 ASPAINITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTER---LNQYQAEN-------QKI--KSARSILIVGG  144 (369)
Q Consensus        81 ~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~-~~---~p~~~~~~---~~~~~~~~-------~~~--~~~~~v~vvG~  144 (369)
                      .+.  .++ +.|.+.++ ++.||+||+|||+. +.   +|+.+...   ..++....       ...  ..+++++|||+
T Consensus        80 ~~v--~v~-~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~  155 (456)
T 1lqt_A           80 GNV--VVG-EHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGN  155 (456)
T ss_dssp             ESC--CBT-TTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECC
T ss_pred             eeE--EEC-CEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECC
Confidence            552  232 33444444 57999999999997 44   44432111   11221110       011  14689999999


Q ss_pred             ChhHHHHHHHHhhh-------------------CCCCeEEEEEcCccccccCC-------------------cch-----
Q 046865          145 GPTGVELAGEIAVD-------------------FPEKKVTLVHKGSRLLEFIG-------------------PKA-----  181 (369)
Q Consensus       145 G~~g~e~a~~l~~~-------------------~~~~~v~lv~~~~~~l~~~~-------------------~~~-----  181 (369)
                      |++|+|+|..|.+.                   ....+|+++.|.+.+...+.                   +++     
T Consensus       156 G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~  235 (456)
T 1lqt_A          156 GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITD  235 (456)
T ss_dssp             SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCH
T ss_pred             CHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchh
Confidence            99999999999852                   12359999999887654322                   122     


Q ss_pred             -------------HHHHHHHHHh------CCcEEEeCceeeeccCCCCCeEEEcC----------------CC--cEEec
Q 046865          182 -------------GDKTLDWLIS------KKVDVKLGQRVNLDSVSEGSDTYLTS----------------TG--DTIKA  224 (369)
Q Consensus       182 -------------~~~~~~~l~~------~gv~i~~~~~v~~i~~~~~~~~v~~~----------------~g--~~i~~  224 (369)
                                   .+.+.+.+++      +||++++++.+.++..++....+++.                +|  +++++
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~  315 (456)
T 1lqt_A          236 EDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPA  315 (456)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEEC
T ss_pred             hhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEc
Confidence                         2445555655      79999999999988754322223332                34  46999


Q ss_pred             cEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          225 DCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       225 d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      |.||+|+|++|++  +  .+  +.++++|++.+|+++|+++.|+|||+|||+..|.. ....|+.+|+.+|.||+..+.+
T Consensus       316 d~vi~a~G~~p~~--l--~g--l~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~-~i~~a~~~g~~~a~~i~~~l~~  388 (456)
T 1lqt_A          316 QLVVRSVGYRGVP--T--PG--LPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTG-VIGTNKKDAQDTVDTLIKNLGN  388 (456)
T ss_dssp             SEEEECSCEECCC--C--TT--SCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCS-CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEccccccCC--C--CC--CcccCCCCeeECCCCcCCCCCCEEEEeccCCCCch-hHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999987  2  23  35778899999999996689999999999865431 2457899999999999988765

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.97  E-value=7.6e-32  Score=277.98  Aligned_cols=275  Identities=16%  Similarity=0.169  Sum_probs=187.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCCCccccccccccccCCccc--ccceecccccc--ccceEEEeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWASLRAMVEPSFG--ERSVINHTDYL--VNGRIVASPAI   85 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~   85 (369)
                      ..+||+|||||+||++||..|+ .|+ +|+|||+++.+++.+..    .-+.+.  ........+++  .+++++.+..+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~----~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v  261 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS----EIPQFRLPYDVVNFEIELMKDLGVKIICGKSL  261 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH----TSCTTTSCHHHHHHHHHHHHTTTCEEEESCCB
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccc----cCCcccCCHHHHHHHHHHHHHCCcEEEcccEe
Confidence            3679999999999999999997 588 79999998877643210    011111  01111111111  25677766554


Q ss_pred             eeecceEEecCCeEEeccEEEEccCCC-CCCCC----Ch-HHH---HHHHHHHHHH-------------HhcCCeEEEEc
Q 046865           86 NITENEVLTAEGRRVVYDYLVIATGHK-DPVPK----TR-TER---LNQYQAENQK-------------IKSARSILIVG  143 (369)
Q Consensus        86 ~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~p~----~~-~~~---~~~~~~~~~~-------------~~~~~~v~vvG  143 (369)
                      ..  +.+.+.+++.+.||+||||||+. |..++    .+ ...   ..++......             ...+++++|||
T Consensus       262 ~~--~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIG  339 (1025)
T 1gte_A          262 SE--NEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLG  339 (1025)
T ss_dssp             ST--TSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEEC
T ss_pred             cc--ceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEEC
Confidence            32  23444445567899999999994 65432    21 111   1122211111             12357999999


Q ss_pred             CChhHHHHHHHHhhhCCCC-eEEEEEcCc-cccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcC---
Q 046865          144 GGPTGVELAGEIAVDFPEK-KVTLVHKGS-RLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTS---  217 (369)
Q Consensus       144 ~G~~g~e~a~~l~~~~~~~-~v~lv~~~~-~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~---  217 (369)
                      ||.+|+|+|..+.+  .|. +|+++++.+ .+++.+++++     +.+++.||++++++.+.++..+++.+ .+++.   
T Consensus       340 gG~~g~e~A~~~~~--~G~~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~  412 (1025)
T 1gte_A          340 AGDTAFDCATSALR--CGARRVFLVFRKGFVNIRAVPEEV-----ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE  412 (1025)
T ss_dssp             SSHHHHHHHHHHHH--TTCSEEEEECSSCGGGCCSCHHHH-----HHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CChHHHHHHHHHHH--cCCCEEEEEEecChhhCCCCHHHH-----HHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeE
Confidence            99999999999874  364 999999988 4555544333     46778999999999888876433322 13221   


Q ss_pred             ---CC---------cEEeccEEEEcCCCCCC-chhhcccccCCCCCCCCcEEeCC-ceeeccCCCeEEecccCCccccch
Q 046865          218 ---TG---------DTIKADCHFLCTGKPVG-SDWLKDTILKDSLDTDGMLMVDE-NLRVKGQKNIFAIGDITDIREIKQ  283 (369)
Q Consensus       218 ---~g---------~~i~~d~vi~a~G~~p~-~~~l~~~~~~~~~~~~g~i~vd~-~l~~~~~~~i~a~GD~~~~~~~~~  283 (369)
                         +|         .++++|.||+|+|++|+ ..++.. ..++.++++|+|.||+ ++|| +.|+|||+|||+..+.  +
T Consensus       413 ~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~-~~gl~~~~~G~I~vd~~~~~T-s~~~VfA~GD~~~~~~--~  488 (1025)
T 1gte_A          413 QDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEA-LSPIKFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMAN--T  488 (1025)
T ss_dssp             ECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHH-TTTSCBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCC--C
T ss_pred             EcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhc-ccCceECCCCCEEECCCCCcc-CCCCEEEeCCCCCCch--H
Confidence               22         36899999999999864 555443 2244678899999997 8998 7999999999997643  6


Q ss_pred             hHHHHHHHHHHHHHHHHHhh
Q 046865          284 GFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~~~  303 (369)
                      .+.|+.||+.||+||...+.
T Consensus       489 ~~~A~~~G~~aA~~i~~~L~  508 (1025)
T 1gte_A          489 TVESVNDGKQASWYIHKYIQ  508 (1025)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999998775

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.97  E-value=1.5e-31  Score=253.51  Aligned_cols=280  Identities=14%  Similarity=0.088  Sum_probs=182.7

Q ss_pred             CcceEEEECCChHHHHHHHHccc-C--CcEEEEcCCCCccccccccccccCCcccc--cceecccccc--ccceEEEeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFGE--RSVINHTDYL--VNGRIVASPA   84 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g--~~V~lie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~   84 (369)
                      ..+||+|||||++|+++|..|++ +  .+|+|||+++.++..+   ...+.+.+..  .....+.+++  .+++++.+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~---~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~   81 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV---RFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVE   81 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH---HHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCcee---ecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeE
Confidence            35799999999999999999864 6  9999999988765322   1111122111  1111112222  1455554432


Q ss_pred             eeeecceEEecCCeEEeccEEEEccCCCC-CCCCCh---HHH---HHHHHHHHH------H---HhcCCeEEEEcCChhH
Q 046865           85 INITENEVLTAEGRRVVYDYLVIATGHKD-PVPKTR---TER---LNQYQAENQ------K---IKSARSILIVGGGPTG  148 (369)
Q Consensus        85 ~~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~p~~~---~~~---~~~~~~~~~------~---~~~~~~v~vvG~G~~g  148 (369)
                      +  . +.|.+.+ ..+.||+||+|||+.+ ..|+++   ...   ..++....+      .   ...+++++|||+|++|
T Consensus        82 v--~-~~V~~~~-~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g  157 (460)
T 1cjc_A           82 V--G-RDVTVQE-LQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVA  157 (460)
T ss_dssp             B--T-TTBCHHH-HHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHH
T ss_pred             E--e-eEEEecc-ceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHH
Confidence            2  1 2333333 3478999999999984 434332   111   122221110      0   1146899999999999


Q ss_pred             HHHHHHHhhh------------------CCCC-eEEEEEcCccc--------------cccCC-----cc----------
Q 046865          149 VELAGEIAVD------------------FPEK-KVTLVHKGSRL--------------LEFIG-----PK----------  180 (369)
Q Consensus       149 ~e~a~~l~~~------------------~~~~-~v~lv~~~~~~--------------l~~~~-----~~----------  180 (369)
                      +|+|..|.+.                  ..+. +|+++.|.+.+              +|..+     .+          
T Consensus       158 ~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~  237 (460)
T 1cjc_A          158 LDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKE  237 (460)
T ss_dssp             HHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTT
T ss_pred             HHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhh
Confidence            9999999831                  2354 89999998765              22110     01          


Q ss_pred             -------hHHHHHHHHHh--------------CCcEEEeCceeeeccCCC-C-Ce-EEEcC---------------CC--
Q 046865          181 -------AGDKTLDWLIS--------------KKVDVKLGQRVNLDSVSE-G-SD-TYLTS---------------TG--  219 (369)
Q Consensus       181 -------~~~~~~~~l~~--------------~gv~i~~~~~v~~i~~~~-~-~~-~v~~~---------------~g--  219 (369)
                             +.+.+.+.+++              +||++++++.+.++..++ + .+ .+++.               +|  
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~  317 (460)
T 1cjc_A          238 AARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDV  317 (460)
T ss_dssp             SCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCce
Confidence                   23444455555              899999999998886542 2 22 23321               34  


Q ss_pred             cEEeccEEEEcCCCCCCchhhcccccCC-CCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHH
Q 046865          220 DTIKADCHFLCTGKPVGSDWLKDTILKD-SLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL  298 (369)
Q Consensus       220 ~~i~~d~vi~a~G~~p~~~~l~~~~~~~-~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i  298 (369)
                      +++++|.||+|+|++|++ +     .++ +++++|+|.||+++|+++.|+|||+|||+..+.. ....|+.+|+.+|.||
T Consensus       318 ~~i~~d~Vi~a~G~~p~~-l-----~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~-~i~~a~~~g~~aa~~i  390 (460)
T 1cjc_A          318 EDLPCGLVLSSIGYKSRP-I-----DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTG-VITTTMTDSFLTGQIL  390 (460)
T ss_dssp             EEEECSEEEECCCEECCC-C-----CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTC-CHHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEECCCCCCCC-C-----CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCc-cHHHHHHHHHHHHHHH
Confidence            579999999999999987 2     233 5677889999999999547999999999954431 3458999999999999


Q ss_pred             HHHhhCC
Q 046865          299 KVLMVGE  305 (369)
Q Consensus       299 ~~~~~g~  305 (369)
                      +..+.+.
T Consensus       391 ~~~l~~~  397 (460)
T 1cjc_A          391 LQDLKAG  397 (460)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            9888653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.97  E-value=3.8e-30  Score=244.65  Aligned_cols=261  Identities=15%  Similarity=0.168  Sum_probs=175.3

Q ss_pred             cceEEEECCChHHHHHHHHcc----cCCc---EEEEcCCCCcccccccccc-------------c---cC----------
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ----FSAD---VTLIDPKEYFEITWASLRA-------------M---VE----------   59 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~----~g~~---V~lie~~~~~~~~~~~~~~-------------~---~~----------   59 (369)
                      .+||+|||||++|++||+.|+    .|.+   |+|||+++.+|..|.....             .   ..          
T Consensus         2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~   81 (464)
T 2xve_A            2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEF   81 (464)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCB
T ss_pred             CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhccc
Confidence            379999999999999999885    5899   9999999877755432100             0   00          


Q ss_pred             Ccccc--------cceecc-------ccccc--cce--EE-Eeeeeeeec--c----eEEecC---C--eEEeccEEEEc
Q 046865           60 PSFGE--------RSVINH-------TDYLV--NGR--IV-ASPAINITE--N----EVLTAE---G--RRVVYDYLVIA  108 (369)
Q Consensus        60 ~~~~~--------~~~~~~-------~~~~~--~~~--~~-~~~~~~~~~--~----~v~~~~---g--~~~~~d~lviA  108 (369)
                      +.+..        ..+...       ..+..  +++  +. ...+..++.  .    +|.+.+   |  .++.||+||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvA  161 (464)
T 2xve_A           82 ADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCC  161 (464)
T ss_dssp             TTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             CCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEEC
Confidence            00000        000000       00011  222  32 345555542  2    455543   4  57899999999


Q ss_pred             cC--CCCCCCCChHHH------HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcc
Q 046865          109 TG--HKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK  180 (369)
Q Consensus       109 tG--~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~  180 (369)
                      ||  +.|.+|.++...      ++...........+++++|||+|++|+|+|.+|++  .+.+|+++++.+.+++..-  
T Consensus       162 tG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~--~g~~V~li~~~~~~~~~~~--  237 (464)
T 2xve_A          162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYK--YGAKKLISCYRTAPMGYKW--  237 (464)
T ss_dssp             CCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHH--TTCSEEEEECSSCCCCCCC--
T ss_pred             CCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHH--hCCeEEEEEECCCCCCCCC--
Confidence            99  777766543210      11110001122457999999999999999999985  3899999999887765321  


Q ss_pred             hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCc
Q 046865          181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDEN  260 (369)
Q Consensus       181 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~  260 (369)
                                ..||+++  ..|.+++.  +  .+.+.+|+++++|.||+|||++|+++++... +++.++++|++ ++.+
T Consensus       238 ----------~~~V~~~--~~V~~i~~--~--~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~-~gl~~~~~~~v-~~~~  299 (464)
T 2xve_A          238 ----------PENWDER--PNLVRVDT--E--NAYFADGSSEKVDAIILCTGYIHHFPFLNDD-LRLVTNNRLWP-LNLY  299 (464)
T ss_dssp             ----------CTTEEEC--SCEEEECS--S--EEEETTSCEEECSEEEECCCBCCCCTTBCTT-TCCCCCSSSCC-SSEE
T ss_pred             ----------CCceEEc--CCeEEEeC--C--EEEECCCCEEeCCEEEECCCCCCCCCCcCcc-cccccCCCccc-cccc
Confidence                      2478887  67777752  2  4778899999999999999999999998752 34455655565 4433


Q ss_pred             ---eeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          261 ---LRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       261 ---l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                         +++ +.|+||++||++...   ..+.|..||+++|++|.
T Consensus       300 ~~~~~t-~~p~i~aiGd~~~~~---~~~~a~~qa~~~a~~l~  337 (464)
T 2xve_A          300 KGVVWE-DNPKFFYIGMQDQWY---SFNMFDAQAWYARDVIM  337 (464)
T ss_dssp             TTTEES-SSTTEEECSCSCCSS---CHHHHHHHHHHHHHHHT
T ss_pred             ceEecC-CCCCEEEEeCccccc---chHHHHHHHHHHHHHHc
Confidence               555 799999999998643   46789999999999997

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.97  E-value=7.6e-32  Score=268.23  Aligned_cols=268  Identities=15%  Similarity=0.119  Sum_probs=185.8

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCccc-cccee-ccccc---cccceEEEe
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVI-NHTDY---LVNGRIVAS   82 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~---~~~~~~~~~   82 (369)
                      +...++||+|||||+||++||+.|+ +|++|+|||+++.++..+......  +... ..... .....   +.++++..+
T Consensus       387 ~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~gv~~~~~  464 (690)
T 3k30_A          387 AKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESAL--PGLSAWGRVKEYREAVLAELPNVEIYRE  464 (690)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTS--TTCGGGGHHHHHHHHHHHTCTTEEEESS
T ss_pred             cccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCC--CchhHHHHHHHHHHHHHHHcCCCEEEEC
Confidence            3445789999999999999999997 599999999998877543321111  1110 01111 11111   113444333


Q ss_pred             eeeeeecceEEecCCeEEeccEEEEccCCCC--------CCC---CChHHHHHHHHHHHH-HHhcCCeEEEEc--CChhH
Q 046865           83 PAINITENEVLTAEGRRVVYDYLVIATGHKD--------PVP---KTRTERLNQYQAENQ-KIKSARSILIVG--GGPTG  148 (369)
Q Consensus        83 ~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~--------~~p---~~~~~~~~~~~~~~~-~~~~~~~v~vvG--~G~~g  148 (369)
                      +       .+...+++++.||+||+|||+.|        ..|   +.+...+.+..+... .....++++|+|  +|++|
T Consensus       465 ~-------~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g  537 (690)
T 3k30_A          465 S-------PMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLG  537 (690)
T ss_dssp             C-------CCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHH
T ss_pred             C-------eecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccH
Confidence            2       22223345688999999999983        233   332211111222211 234467899999  99999


Q ss_pred             HHHHHHHhhhCCCCeEEEEEcCccccccCC-cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE---cCCCcEEec
Q 046865          149 VELAGEIAVDFPEKKVTLVHKGSRLLEFIG-PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL---TSTGDTIKA  224 (369)
Q Consensus       149 ~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~i~~  224 (369)
                      +|+|..|.+  .+.+|+++++.+.+++..+ +.....+.+.++++||+++++++|.+++.+  ...+.   +.+++++++
T Consensus       538 ~e~A~~L~~--~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~v~~~~~~~~~~i~a  613 (690)
T 3k30_A          538 GVVAELLAQ--KGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAG--GVTVRDTYASIERELEC  613 (690)
T ss_dssp             HHHHHHHHH--TTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETT--EEEEEETTTCCEEEEEC
T ss_pred             HHHHHHHHh--CCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECC--eEEEEEccCCeEEEEEC
Confidence            999999985  3899999999998887543 567888999999999999999999988743  33343   234568999


Q ss_pred             cEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          225 DCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       225 d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      |.||+|+|++|+++++.....      .+.       ++ +.|+||++|||+..+   ....|+.||+.+|.||...+.+
T Consensus       614 D~VV~A~G~~p~~~l~~~l~~------~~~-------~t-~~~~VyaiGD~~~~~---~~~~A~~~g~~aa~~i~~~l~g  676 (690)
T 3k30_A          614 DAVVMVTARLPREELYLDLVA------RRD-------AG-EIASVRGIGDAWAPG---TIAAAVWSGRRAAEEFDAVLPS  676 (690)
T ss_dssp             SEEEEESCEEECCHHHHHHHH------HHH-------HT-SCSEEEECGGGTSCB---CHHHHHHHHHHHHHHTTCCCCC
T ss_pred             CEEEECCCCCCChHHHHHHhh------hhc-------cc-CCCCEEEEeCCCchh---hHHHHHHHHHHHHHHHHhhccC
Confidence            999999999999987654321      111       44 799999999999754   3556999999999999977766


Q ss_pred             CC
Q 046865          305 ER  306 (369)
Q Consensus       305 ~~  306 (369)
                      ++
T Consensus       677 ~~  678 (690)
T 3k30_A          677 ND  678 (690)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.97  E-value=1.1e-31  Score=268.17  Aligned_cols=271  Identities=18%  Similarity=0.139  Sum_probs=181.4

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccc-cceEE---Eeee
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLV-NGRIV---ASPA   84 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~   84 (369)
                      ...++||+|||||+||++||..|+ +|++|+|||+++.++..+.....  .+...  .+....+++. .++.+   ...+
T Consensus       386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~--~pg~~--~~~~~~~~~~~~i~~~~~~~~~~  461 (729)
T 1o94_A          386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA--LPGLG--EWSYHRDYRETQITKLLKKNKES  461 (729)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT--STTCG--GGHHHHHHHHHHHHHHHHHSTTC
T ss_pred             ccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeeccc--CCChH--HHHHHHHHHHHHHHHhhcccCCc
Confidence            345789999999999999999996 59999999999887654322111  01111  0000011100 01100   0011


Q ss_pred             eeee-cceEEecCCeEEeccEEEEccCCC--------CCC---CCCh--HHHHHHHHHHHH-HHhcCCeEEEEc--CChh
Q 046865           85 INIT-ENEVLTAEGRRVVYDYLVIATGHK--------DPV---PKTR--TERLNQYQAENQ-KIKSARSILIVG--GGPT  147 (369)
Q Consensus        85 ~~~~-~~~v~~~~g~~~~~d~lviAtG~~--------~~~---p~~~--~~~~~~~~~~~~-~~~~~~~v~vvG--~G~~  147 (369)
                      +.+. ...+.+.++..+.||+||+|||+.        |..   |+.+  ...+.+..+... .....++++|||  +|++
T Consensus       462 v~i~~~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~  541 (729)
T 1o94_A          462 QLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFM  541 (729)
T ss_dssp             EEECSCCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSH
T ss_pred             eEEEeCeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCch
Confidence            2222 123444445568999999999997        333   3332  111222222222 223467999999  9999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEEcCcccccc--CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc--CCC-cE-
Q 046865          148 GVELAGEIAVDFPEKKVTLVHKGSRLLEF--IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT--STG-DT-  221 (369)
Q Consensus       148 g~e~a~~l~~~~~~~~v~lv~~~~~~l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~--~~g-~~-  221 (369)
                      |+|+|..|.+  .+.+|+++++.+ +++.  ++.. ...+.+.|+++||++++++.+.+++.+  .+.+..  .++ ++ 
T Consensus       542 g~e~A~~l~~--~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~~~~~~~~~~~~~  615 (729)
T 1o94_A          542 APSLAEKLAT--AGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPG--RMEIYNIWGDGSKRT  615 (729)
T ss_dssp             HHHHHHHHHH--TTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEETT--EEEEEETTCSCSCCC
T ss_pred             HHHHHHHHHH--cCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEECC--eEEEEEecCCceEEe
Confidence            9999999985  388999999998 6652  3434 567888899999999999999988643  333332  233 23 


Q ss_pred             -----------------EeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchh
Q 046865          222 -----------------IKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG  284 (369)
Q Consensus       222 -----------------i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~  284 (369)
                                       +++|.||+|+|++|+++++.....          .+|+++|| +.|+|||+|||+..   +..
T Consensus       616 ~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~----------~vd~~~~t-~~~~VyAiGD~~~~---~~~  681 (729)
T 1o94_A          616 YRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA----------RESEWAEN-DIKGIYLIGDAEAP---RLI  681 (729)
T ss_dssp             CCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH----------TGGGTGGG-TCCEEEECGGGTSC---CCH
T ss_pred             cccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh----------hccccccc-CCCCeEEEeCccch---hhH
Confidence                             999999999999999987653211          26888997 79999999999963   356


Q ss_pred             HHHHHHHHHHHHHHHHHhhC
Q 046865          285 FLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       285 ~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ..|+.||+.+|.||...+.+
T Consensus       682 ~~A~~~G~~aA~~i~~~l~~  701 (729)
T 1o94_A          682 ADATFTGHRVAREIEEANPQ  701 (729)
T ss_dssp             HHHHHHHHHHHHTTTSSCTT
T ss_pred             HHHHHHHHHHHHHhhhhccc
Confidence            78999999999999865543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.97  E-value=2e-30  Score=265.69  Aligned_cols=270  Identities=15%  Similarity=0.125  Sum_probs=183.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc-cccCCcccccceecccc---ccccceEEEe-eee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-AMVEPSFGERSVINHTD---YLVNGRIVAS-PAI   85 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~   85 (369)
                      .++||||||||+||++||..|+ .|++|+|||+++.++..+.... ..+.............+   .+.+++++.+ .+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~  206 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVF  206 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEE
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEE
Confidence            3689999999999999999986 5999999999988774433110 11110000000000000   1124455433 333


Q ss_pred             eeecc-------------eEEe------cCCeEEeccEEEEccCCCCCCCCCh---HHHH---HHHHHHHHH--HhcCCe
Q 046865           86 NITEN-------------EVLT------AEGRRVVYDYLVIATGHKDPVPKTR---TERL---NQYQAENQK--IKSARS  138 (369)
Q Consensus        86 ~~~~~-------------~v~~------~~g~~~~~d~lviAtG~~~~~p~~~---~~~~---~~~~~~~~~--~~~~~~  138 (369)
                      .++..             .+..      .++.++.||+||||||+.|..|+++   ...+   .++......  ....++
T Consensus       207 ~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~  286 (965)
T 2gag_A          207 GSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGAR  286 (965)
T ss_dssp             EEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSS
T ss_pred             eeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCe
Confidence            33321             1111      1124789999999999986655432   1111   122222221  123589


Q ss_pred             EEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC-CCC-eEEEc
Q 046865          139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGS-DTYLT  216 (369)
Q Consensus       139 v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~  216 (369)
                      ++|||+|++|+|+|..|.+.  +.+|+++++.+++++.         .+.+++.||++++++.+.+++.+ ++. ..+++
T Consensus       287 vvViGgG~~g~E~A~~L~~~--G~~Vtvv~~~~~~~~~---------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~  355 (965)
T 2gag_A          287 IAVATTNDSAYELVRELAAT--GGVVAVIDARSSISAA---------AAQAVADGVQVISGSVVVDTEADENGELSAIVV  355 (965)
T ss_dssp             EEEEESSTTHHHHHHHHGGG--TCCSEEEESCSSCCHH---------HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEE
T ss_pred             EEEEcCCHHHHHHHHHHHHc--CCcEEEEECCCccchh---------HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEE
Confidence            99999999999999999853  8889999999876531         56788999999999999998753 232 23444


Q ss_pred             CC-------C--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceee----ccCCCeEEecccCCccccch
Q 046865          217 ST-------G--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRV----KGQKNIFAIGDITDIREIKQ  283 (369)
Q Consensus       217 ~~-------g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~----~~~~~i~a~GD~~~~~~~~~  283 (369)
                      .+       |  +++++|.|++++|++||++++...        .|+|.+|++++.    ++.|+|||+|||++.+.  .
T Consensus       356 ~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~--------~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~--l  425 (965)
T 2gag_A          356 AELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR--------QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLD--T  425 (965)
T ss_dssp             EEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT--------TCCEEEETTTTEEEECSCCTTEEECGGGGTCCS--H
T ss_pred             EeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC--------CCcEEEcCcccccccCCCCCCEEEEEecCCchh--H
Confidence            33       4  579999999999999999876532        367999998772    47999999999998754  3


Q ss_pred             hHHHHHHHHHHHHHHHHHhh
Q 046865          284 GFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~~~  303 (369)
                       ..|..||++||.||+..+.
T Consensus       426 -~~A~~~G~~aA~~i~~~lg  444 (965)
T 2gag_A          426 -ASALSTGAATGAAAATAAG  444 (965)
T ss_dssp             -HHHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHHHHHHHHcC
Confidence             4899999999999998774

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.96  E-value=6.4e-30  Score=244.91  Aligned_cols=250  Identities=16%  Similarity=0.116  Sum_probs=175.0

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCCccccccccccc-cC-Ccccccceecccc-ccccceEE-Eeeeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAM-VE-PSFGERSVINHTD-YLVNGRIV-ASPAINI   87 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~   87 (369)
                      .++||+|||||++|+++|.+|++.++|+|||+++++++.+...... .. +.........+.+ +..++++. ...+..+
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLETSALGV  186 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTTCCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTCCTTEEEETTEEECCC
T ss_pred             ccCCEEEECccHHHHHHHHHHHhcCCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHHhcCCEEEcCCEEEEE
Confidence            3579999999999999999986339999999998877554321110 00 0000000011111 11244443 3344444


Q ss_pred             ecc--eE--Ee-cCCe--EEeccEEEEccCCCCCCCCChH---HH---HHHHHHHHHH--HhcCCeEEEEcCChhHHHHH
Q 046865           88 TEN--EV--LT-AEGR--RVVYDYLVIATGHKDPVPKTRT---ER---LNQYQAENQK--IKSARSILIVGGGPTGVELA  152 (369)
Q Consensus        88 ~~~--~v--~~-~~g~--~~~~d~lviAtG~~~~~p~~~~---~~---~~~~~~~~~~--~~~~~~v~vvG~G~~g~e~a  152 (369)
                      +..  .+  .. .+++  .+.||+||+|||+.|..|+++.   ..   ..++....+.  ....++++|+|+|++|+|  
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle--  264 (493)
T 1y56_A          187 FDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI--  264 (493)
T ss_dssp             EECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH--
T ss_pred             EcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH--
Confidence            432  22  11 3443  6899999999999876554331   11   1222222222  234589999999999988  


Q ss_pred             HHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       153 ~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G  232 (369)
                                                        +.++++||++++++.|.+++.+++...+.+.+|+++++|.||+|+|
T Consensus       265 ----------------------------------~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G  310 (493)
T 1y56_A          265 ----------------------------------QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADG  310 (493)
T ss_dssp             ----------------------------------HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCC
T ss_pred             ----------------------------------HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCC
Confidence                                              4567789999999999998765544567788888999999999999


Q ss_pred             CCCCchhhcccccCCCCCCCCcEE-eCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHh
Q 046865          233 KPVGSDWLKDTILKDSLDTDGMLM-VDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       233 ~~p~~~~l~~~~~~~~~~~~g~i~-vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~  302 (369)
                      ++|+++++...++.+.++++|++. ||+++|  +.|+|||+|||++.+   ++..|..||+++|.||...+
T Consensus       311 ~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~--s~~~vya~GD~~~~~---~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          311 RRPDINPITQAGGKLRFRRGYYSPVLDEYHR--IKDGIYVAGSAVSIK---PHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             EEECCHHHHHTTCCEEEETTEEEECCCTTSE--EETTEEECSTTTCCC---CHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcCchHHHhcCCCccccCCceeeccccccC--cCCCEEEEeccCCcc---CHHHHHHHHHHHHHHHHHHc
Confidence            999999888777654456788888 899999  589999999999764   46789999999999998766

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.96  E-value=6.6e-29  Score=235.56  Aligned_cols=263  Identities=18%  Similarity=0.219  Sum_probs=172.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCCCccccccccccc---------------------------cCCc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEYFEITWASLRAM---------------------------VEPS   61 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~~~~~~~~~~~~~---------------------------~~~~   61 (369)
                      +.+||+|||||++|+++|+.|+ .|.  +|+|||+++.++..|......                           ....
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            4689999999999999999986 488  999999987665443221100                           0000


Q ss_pred             c-------------------cc--cce------ecc-ccccc--cceE-EEeeeeeeecc----eEEecC---Ce---EE
Q 046865           62 F-------------------GE--RSV------INH-TDYLV--NGRI-VASPAINITEN----EVLTAE---GR---RV  100 (369)
Q Consensus        62 ~-------------------~~--~~~------~~~-~~~~~--~~~~-~~~~~~~~~~~----~v~~~~---g~---~~  100 (369)
                      +                   ..  ..+      ..+ .++..  +..+ ...+++.++..    .|.+.+   |.   ++
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~  164 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKD  164 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEE
Confidence            0                   00  000      000 00000  1122 23455555432    455544   55   79


Q ss_pred             eccEEEEccCC--CCCCCCChHHH-HH--------HHHHH-HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCe-EEEE
Q 046865          101 VYDYLVIATGH--KDPVPKTRTER-LN--------QYQAE-NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKK-VTLV  167 (369)
Q Consensus       101 ~~d~lviAtG~--~~~~p~~~~~~-~~--------~~~~~-~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv  167 (369)
                      .||+||+|||.  .|.+|.++... +.        ..... ......+++|+|||+|++|+|+|..|++  .+.+ |+++
T Consensus       165 ~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~--~~~~~V~l~  242 (447)
T 2gv8_A          165 IFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTP--VAKHPIYQS  242 (447)
T ss_dssp             EESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTT--TSCSSEEEE
T ss_pred             EeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHH--HhCCcEEEE
Confidence            99999999998  67776654321 10        00000 0112357899999999999999999984  4778 9999


Q ss_pred             EcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcE-EeccEEEEcCCCCCCchh-----hc
Q 046865          168 HKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDT-IKADCHFLCTGKPVGSDW-----LK  241 (369)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~d~vi~a~G~~p~~~~-----l~  241 (369)
                      ++++.+               ++..||++  +..|.++..++  ..|++.+|++ +++|.||+|||++|++++     +.
T Consensus       243 ~r~~~~---------------l~~~~i~~--~~~v~~~~~~~--~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~  303 (447)
T 2gv8_A          243 LLGGGD---------------IQNESLQQ--VPEITKFDPTT--REIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLK  303 (447)
T ss_dssp             CTTCCS---------------CBCSSEEE--ECCEEEEETTT--TEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCC
T ss_pred             eCCCCc---------------CCCCCeEE--ecCeEEEecCC--CEEEECCCCEeccCCEEEECCCCCcCCCCCcccccc
Confidence            998755               34567764  56777775333  3577888976 799999999999999998     65


Q ss_pred             ccccCCCCCCCCcEEeCCceee--ccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHH
Q 046865          242 DTILKDSLDTDGMLMVDENLRV--KGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV  300 (369)
Q Consensus       242 ~~~~~~~~~~~g~i~vd~~l~~--~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~  300 (369)
                      ....+  +..++.+.++.+.++  +++|++|++||+....   ..+.|..||+++|+||..
T Consensus       304 ~~~~~--i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~---~~~~a~~qa~~~a~~~~g  359 (447)
T 2gv8_A          304 SPETK--LIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV---PFPTSQAQAAFLARVWSG  359 (447)
T ss_dssp             STTTC--CCSSSSSCCSEETTTEETTCTTEEESSCCBSSC---HHHHHHHHHHHHHHHHTT
T ss_pred             cccCc--eecCCCcccccccccccCCCCcEEEEecccccc---CchHHHHHHHHHHHHHcC
Confidence            43222  223455556655442  4799999999998653   568899999999999973

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.96  E-value=1e-28  Score=245.19  Aligned_cols=255  Identities=15%  Similarity=0.158  Sum_probs=175.1

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEeeeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVASPAINI   87 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (369)
                      ..++||+|||||+||++||..|+ +|++|+|||+++.+++.+..................+..++  .+++++.++.+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  450 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  450 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH
Confidence            45689999999999999999986 59999999999888765432111111000000011111111  1455554442211


Q ss_pred             ecceEEecCCeEE-eccEEEEccCCCCCCCCChH---HHHHHHHHHHH-HHhcCCeEEEEcCChhHHHHHHHHhhhC---
Q 046865           88 TENEVLTAEGRRV-VYDYLVIATGHKDPVPKTRT---ERLNQYQAENQ-KIKSARSILIVGGGPTGVELAGEIAVDF---  159 (369)
Q Consensus        88 ~~~~v~~~~g~~~-~~d~lviAtG~~~~~p~~~~---~~~~~~~~~~~-~~~~~~~v~vvG~G~~g~e~a~~l~~~~---  159 (369)
                                ..+ .||+||+|||+.|..|+++.   ..+.++.+... ....+++++|||+|++|+|+|..|.+..   
T Consensus       451 ----------~~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~v  520 (671)
T 1ps9_A          451 ----------DQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGEST  520 (671)
T ss_dssp             ----------SSSCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ----------HHhhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCc
Confidence                      224 89999999999977665432   11112222221 2245789999999999999999987421   


Q ss_pred             --------------------------------CCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          160 --------------------------------PEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       160 --------------------------------~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                                                      ...+|+++++.+..+. .+++.....+++.|+++||++++++.+.+++
T Consensus       521 tv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  600 (671)
T 1ps9_A          521 SQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID  600 (671)
T ss_dssp             GGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE
T ss_pred             ccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEe
Confidence                                            0146788888776554 5677788888999999999999999999886


Q ss_pred             CCCCCeEEEcCCC--cEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchh
Q 046865          207 VSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQG  284 (369)
Q Consensus       207 ~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~  284 (369)
                      .  +.+.++ .+|  +++++|.||+|+|++||++++...                  +. ..++||++|||+.... +.+
T Consensus       601 ~--~~v~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l------------------~~-~g~~v~aiGD~~~~~~-~~~  657 (671)
T 1ps9_A          601 D--DGLHVV-INGETQVLAVDNVVICAGQEPNRALAQPL------------------ID-SGKTVHLIGGCDVAME-LDA  657 (671)
T ss_dssp             T--TEEEEE-ETTEEEEECCSEEEECCCEEECCTTHHHH------------------HT-TTCCEEECGGGTCCSS-CCH
T ss_pred             C--CeEEEe-cCCeEEEEeCCEEEECCCccccHHHHHHH------------------Hh-cCCCEEEECCcCccCc-hhH
Confidence            3  334443 566  579999999999999998776431                  11 2478999999997653 357


Q ss_pred             HHHHHHHHHHHHHH
Q 046865          285 FLAQKHAQVAAKNL  298 (369)
Q Consensus       285 ~~A~~~g~~~a~~i  298 (369)
                      ..|++||..+|.||
T Consensus       658 ~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          658 RRAIAQGTRLALEI  671 (671)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            89999999999985

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.95  E-value=9.8e-28  Score=231.44  Aligned_cols=285  Identities=15%  Similarity=0.150  Sum_probs=181.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCCCccccccccc--c--------ccCCccc--------c-cceecc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASLR--A--------MVEPSFG--------E-RSVINH   70 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~~~~~~~~~~~--~--------~~~~~~~--------~-~~~~~~   70 (369)
                      .++||+|||||++|+++|..|+ + |.+|+|||+++.++..|....  .        .....+.        . ..+...
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~   86 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQ   86 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCH
Confidence            3589999999999999999997 4 899999999887764432110  0        0000000        0 000000


Q ss_pred             ---ccc----cc--cc--eE-EEeeeeeee--cc----eEEecCCeEEeccEEEEccC--CCCCCCCChHHH------HH
Q 046865           71 ---TDY----LV--NG--RI-VASPAINIT--EN----EVLTAEGRRVVYDYLVIATG--HKDPVPKTRTER------LN  124 (369)
Q Consensus        71 ---~~~----~~--~~--~~-~~~~~~~~~--~~----~v~~~~g~~~~~d~lviAtG--~~~~~p~~~~~~------~~  124 (369)
                         .++    ..  ++  .+ ...++..++  .+    .|.+.+|+++.||+||+|||  +.|..|.++...      ++
T Consensus        87 ~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~  166 (540)
T 3gwf_A           87 PEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIH  166 (540)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEE
T ss_pred             HHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEEE
Confidence               000    00  11  22 233444443  22    67788888899999999999  566666543211      11


Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc-ccccCCcchHHHHHHHHH-------------
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LLEFIGPKAGDKTLDWLI-------------  190 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~-~l~~~~~~~~~~~~~~l~-------------  190 (369)
                      ...........+++++|||+|.+|+|+|..|++  .+.+|++++|.+. ++|..++++.+.+++.++             
T Consensus       167 ~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~  244 (540)
T 3gwf_A          167 TAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAP--EVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNS  244 (540)
T ss_dssp             GGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTT--TCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTS
T ss_pred             eecCCCccccccceEEEECCCchHHHHHHHHHh--hCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhc
Confidence            111011122457899999999999999999985  4899999999998 566665554444333332             


Q ss_pred             --------------------------------------------------------------------------------
Q 046865          191 --------------------------------------------------------------------------------  190 (369)
Q Consensus       191 --------------------------------------------------------------------------------  190 (369)
                                                                                                      
T Consensus       245 ~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~  324 (540)
T 3gwf_A          245 AVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKG  324 (540)
T ss_dssp             SSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCS
T ss_pred             cccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCC
Confidence                                                                                            


Q ss_pred             -----------------hCCcEEEe--CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhccccc----CC
Q 046865          191 -----------------SKKVDVKL--GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTIL----KD  247 (369)
Q Consensus       191 -----------------~~gv~i~~--~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~----~~  247 (369)
                                       +.+|+++.  +..|.+++.+    .+.+++|+++++|.||+|||+.+++.++....+    +.
T Consensus       325 ~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~----gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~  400 (540)
T 3gwf_A          325 LFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK----GVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGL  400 (540)
T ss_dssp             CCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS----EEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGC
T ss_pred             CCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC----eEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCc
Confidence                             34788875  6778777643    378899999999999999999998755543221    00


Q ss_pred             CCCC--CCcEEeCCceeeccCCCeEEe-cccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          248 SLDT--DGMLMVDENLRVKGQKNIFAI-GDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       248 ~~~~--~g~i~vd~~l~~~~~~~i~a~-GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      .+++  ++.......+.+.+.||+|.+ |..+..  ......+..|++++++.|.....+
T Consensus       401 ~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~--~s~~~~~e~q~~~i~~~i~~~~~~  458 (540)
T 3gwf_A          401 HINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPF--TNLPPSIETQVEWISDTIGYAERN  458 (540)
T ss_dssp             BHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBC--SCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHhhccChhhccccccCCCCceEEEecCCCCC--ccHHHHHHHHHHHHHHHHHHHHHC
Confidence            1110  011222333667789999998 876642  223567888999999988765543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.93  E-value=3.9e-26  Score=220.52  Aligned_cols=283  Identities=16%  Similarity=0.159  Sum_probs=170.6

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccccc--c------------cCC------cccc-----
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA--M------------VEP------SFGE-----   64 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~--~------------~~~------~~~~-----   64 (369)
                      ..++||||||||++|+++|..|+ .|.+|+|||+++.+|..|.....  .            ..+      ....     
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~   86 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQ   86 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCH
Confidence            34689999999999999999997 59999999999877654421100  0            000      0000     


Q ss_pred             cceeccc-cccc--cc--eE-EEeeeeeee--cc----eEEecCCeEEeccEEEEccC--CCCCCCCChHHH------HH
Q 046865           65 RSVINHT-DYLV--NG--RI-VASPAINIT--EN----EVLTAEGRRVVYDYLVIATG--HKDPVPKTRTER------LN  124 (369)
Q Consensus        65 ~~~~~~~-~~~~--~~--~~-~~~~~~~~~--~~----~v~~~~g~~~~~d~lviAtG--~~~~~p~~~~~~------~~  124 (369)
                      ..+..+. ....  ++  .+ ...++..++  .+    .|.+.+|+++.||+||+|||  +.|..|.++...      ++
T Consensus        87 ~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h  166 (545)
T 3uox_A           87 PEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFH  166 (545)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEE
T ss_pred             HHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEE
Confidence            0000000 0000  11  11 223444443  22    67788898999999999999  676666543211      11


Q ss_pred             HHHHHHH-------HHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc-ccccCCcchHHHHHHH--------
Q 046865          125 QYQAENQ-------KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LLEFIGPKAGDKTLDW--------  188 (369)
Q Consensus       125 ~~~~~~~-------~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~-~l~~~~~~~~~~~~~~--------  188 (369)
                      .......       ....+++|+|||+|++|+|+|..|++  .+.+|+++.|+++ ++|..++++....++.        
T Consensus       167 ~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~--~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~  244 (545)
T 3uox_A          167 SSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAE--TAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTI  244 (545)
T ss_dssp             GGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTT--TBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHH
T ss_pred             cccccccccccccccccCCCeEEEECCCccHHHHHHHHHh--hCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHH
Confidence            1110011       12357899999999999999999985  4899999999997 4554443322221111        


Q ss_pred             --------------------------------------------------------------------------------
Q 046865          189 --------------------------------------------------------------------------------  188 (369)
Q Consensus       189 --------------------------------------------------------------------------------  188 (369)
                                                                                                      
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~  324 (545)
T 3uox_A          245 LEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAE  324 (545)
T ss_dssp             HHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                                                                                            


Q ss_pred             -----------------------HHhCCcEEEe--CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhccc
Q 046865          189 -----------------------LISKKVDVKL--GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT  243 (369)
Q Consensus       189 -----------------------l~~~gv~i~~--~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~  243 (369)
                                             |.+.+|+++.  ++.|.+++.+    .+.+.+| ++++|.||+|||+.+++.++...
T Consensus       325 ~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~----gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~  399 (545)
T 3uox_A          325 KLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPE----GIKTADA-AYDLDVIIYATGFDAVTGSLDRI  399 (545)
T ss_dssp             HTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETT----EEEESSC-EEECSEEEECCCCBSSSCSCTTS
T ss_pred             hCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccC----eEEeCCC-eeecCEEEECCccccccccCCCc
Confidence                                   1223677775  6677777532    3778899 99999999999999876554322


Q ss_pred             ccCCCCCCCCcEEeCC----------ceeeccCCCeEEecccC-CccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          244 ILKDSLDTDGMLMVDE----------NLRVKGQKNIFAIGDIT-DIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       244 ~~~~~~~~~g~i~vd~----------~l~~~~~~~i~a~GD~~-~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      .+   ...+| ..+++          -+.+.+.||+|.+.--. ..........+..|++++++.|.....+
T Consensus       400 ~i---~g~~G-~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~  467 (545)
T 3uox_A          400 DI---RGKDN-VRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMISYMKDN  467 (545)
T ss_dssp             EE---ECGGG-CBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eE---ECCCC-ccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHHHHHHC
Confidence            11   11223 22322          24556899999974221 1111123457788999999988765543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.93  E-value=1.8e-25  Score=216.60  Aligned_cols=286  Identities=15%  Similarity=0.193  Sum_probs=175.6

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc--cc-cc-----------CC------cccc----
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL--RA-MV-----------EP------SFGE----   64 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~--~~-~~-----------~~------~~~~----   64 (369)
                      ...++||+|||||++|+++|..|+ .|.+|+|||+++.++..|...  .. ..           .+      ....    
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~   92 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYAS   92 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCB
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCC
Confidence            344689999999999999999997 599999999998776443210  00 00           00      0000    


Q ss_pred             -cceeccc----cccc-cceEE-Eeeeeeee--cc----eEEecCCeEEeccEEEEccCC--CCCCCCChHHH------H
Q 046865           65 -RSVINHT----DYLV-NGRIV-ASPAINIT--EN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTRTER------L  123 (369)
Q Consensus        65 -~~~~~~~----~~~~-~~~~~-~~~~~~~~--~~----~v~~~~g~~~~~d~lviAtG~--~~~~p~~~~~~------~  123 (369)
                       ..+..+.    +.+. ...+. ..++..++  ..    +|.+.+|+++.+|+||+|||.  .|.+|.++...      +
T Consensus        93 ~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~  172 (542)
T 1w4x_A           93 QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLY  172 (542)
T ss_dssp             HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEE
T ss_pred             HHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceE
Confidence             0000000    0000 11222 23344442  21    567778888999999999994  56665443110      1


Q ss_pred             HHHHHH-HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc-cccCCcchHHHH----------------
Q 046865          124 NQYQAE-NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-LEFIGPKAGDKT----------------  185 (369)
Q Consensus       124 ~~~~~~-~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~-l~~~~~~~~~~~----------------  185 (369)
                      ++.... ......+++++|||+|.+|+|++..+...  +.+|+++.|.+.+ ++..+.++...+                
T Consensus       173 hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~--~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~  250 (542)
T 1w4x_A          173 HTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESR  250 (542)
T ss_dssp             EGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHH
T ss_pred             ECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhc--CceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHH
Confidence            111000 00113579999999999999999999864  8899999998866 343221111000                


Q ss_pred             -----------------------------------------------------------HHH------------------
Q 046865          186 -----------------------------------------------------------LDW------------------  188 (369)
Q Consensus       186 -----------------------------------------------------------~~~------------------  188 (369)
                                                                                 ++.                  
T Consensus       251 ~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~  330 (542)
T 1w4x_A          251 NTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKG  330 (542)
T ss_dssp             TSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCS
T ss_pred             hhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCC
Confidence                                                                       001                  


Q ss_pred             -----------------HHhCCcEEE--eCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCC
Q 046865          189 -----------------LISKKVDVK--LGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSL  249 (369)
Q Consensus       189 -----------------l~~~gv~i~--~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~  249 (369)
                                       +.+.+|+++  .++.|.+++.    ..|+++| +++++|.||+|||+.++++++....+   .
T Consensus       331 ~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~----~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i---~  402 (542)
T 1w4x_A          331 YPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP----RGVRTSE-REYELDSLVLATGFDALTGALFKIDI---R  402 (542)
T ss_dssp             SCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS----SEEEESS-CEEECSEEEECCCCCCTTHHHHTSEE---E
T ss_pred             CCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC----CeEEeCC-eEEecCEEEEcCCccccccCcCceee---E
Confidence                             111346665  3556776653    2367778 89999999999999998776654321   2


Q ss_pred             CCCCcEEeC---------CceeeccCCCeEEe-cccCCccccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865          250 DTDGMLMVD---------ENLRVKGQKNIFAI-GDITDIREIKQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       250 ~~~g~i~vd---------~~l~~~~~~~i~a~-GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                      ..+|....+         ..+.+.+.||+|++ |+.+..........|..|+++++++|....++.
T Consensus       403 g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~~  468 (542)
T 1w4x_A          403 GVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNG  468 (542)
T ss_dssp             CGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHCC
Confidence            233433332         12566689999998 998753333345789999999999998776553

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.93  E-value=1.7e-25  Score=216.24  Aligned_cols=283  Identities=17%  Similarity=0.169  Sum_probs=170.3

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc--c--------ccCCccc--------------c-
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR--A--------MVEPSFG--------------E-   64 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~--~--------~~~~~~~--------------~-   64 (369)
                      ..++||||||||++|+++|..|+ .|.+|+|||+++.++..|....  .        .....+.              . 
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~   98 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQ   98 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBH
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCH
Confidence            45689999999999999999996 5999999999887765442110  0        0000000              0 


Q ss_pred             cceecc-ccccc--cc--eEE-Eeeeeeee--cc----eEEecCCeEEeccEEEEccC--CCCCCCCChHHH------HH
Q 046865           65 RSVINH-TDYLV--NG--RIV-ASPAINIT--EN----EVLTAEGRRVVYDYLVIATG--HKDPVPKTRTER------LN  124 (369)
Q Consensus        65 ~~~~~~-~~~~~--~~--~~~-~~~~~~~~--~~----~v~~~~g~~~~~d~lviAtG--~~~~~p~~~~~~------~~  124 (369)
                      ..+..+ .....  ++  .+. ..+++.++  .+    +|.+.+|+++.||+||+|||  +.|..|.++...      ++
T Consensus        99 ~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~  178 (549)
T 4ap3_A           99 PEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVH  178 (549)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEE
T ss_pred             HHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEE
Confidence            000000 00000  11  222 23444443  33    67788888999999999999  666666543211      11


Q ss_pred             HHHHH-HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc-cccCCcchHHHHHHH--------------
Q 046865          125 QYQAE-NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-LEFIGPKAGDKTLDW--------------  188 (369)
Q Consensus       125 ~~~~~-~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~-l~~~~~~~~~~~~~~--------------  188 (369)
                      ..... ......+++++|||+|.+|+|+|..|++.  +.+|++++|++.+ +|..++++.+..++.              
T Consensus       179 ~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~--~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r~  256 (549)
T 4ap3_A          179 TARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQ--AEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRE  256 (549)
T ss_dssp             GGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHHH
T ss_pred             eccccccccccCCCEEEEECCCchHHHHHHHHHhh--CCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHHh
Confidence            11100 01123579999999999999999999864  8999999999874 444433322222111              


Q ss_pred             --------------------------------------------------------------------------------
Q 046865          189 --------------------------------------------------------------------------------  188 (369)
Q Consensus       189 --------------------------------------------------------------------------------  188 (369)
                                                                                                      
T Consensus       257 ~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~  336 (549)
T 4ap3_A          257 SGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDH  336 (549)
T ss_dssp             SSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSC
T ss_pred             hccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCC
Confidence                                                                                            


Q ss_pred             ----------------HHhCCcEEE--eCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCC
Q 046865          189 ----------------LISKKVDVK--LGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLD  250 (369)
Q Consensus       189 ----------------l~~~gv~i~--~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~  250 (369)
                                      +.+.+|+++  ....|.+++.+    .+.+.+| ++++|.||+|||+.+++.++....+    .
T Consensus       337 ~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~----gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i----~  407 (549)
T 4ap3_A          337 AIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDET----GIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEI----V  407 (549)
T ss_dssp             CBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETT----EEEESSC-EEECSEEEECCCEEESSTTGGGSEE----E
T ss_pred             CCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCC----cEEeCCC-ceecCEEEECCcccccccccCceeE----E
Confidence                            112367776  24567766532    3778899 9999999999999987654433221    1


Q ss_pred             CCCcEEeCC----------ceeeccCCCeEEe-cccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          251 TDGMLMVDE----------NLRVKGQKNIFAI-GDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       251 ~~g~i~vd~----------~l~~~~~~~i~a~-GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      .++.+.+++          -+.+.+.||+|.+ |-............+..|++++++.|....++
T Consensus       408 g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~  472 (549)
T 4ap3_A          408 GRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYLDAR  472 (549)
T ss_dssp             CGGGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHHHHHHC
Confidence            122233332          2455679999996 43322222223457788999999888655443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.92  E-value=1.2e-24  Score=180.47  Aligned_cols=158  Identities=22%  Similarity=0.203  Sum_probs=133.4

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------cC-----CcchHHHHHHHHHhCCcEEEeCceee
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FI-----GPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------~~-----~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      +++|||+|++|+|+|..|.+  .+.+|+++++.+.+++         .+     ++++.+.+.+.+++.||+++++ +|+
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~   79 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLAR--AGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVK   79 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCC
T ss_pred             eEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEE
Confidence            68999999999999999985  3899999999886652         23     3678889999999999999999 999


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccch
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ  283 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~  283 (369)
                      +++.+++.+.+++++| ++++|.||+|+|.+|+.  +...++  +++ +|+|.||+++|| +.|+|||+|||+..+. ++
T Consensus        80 ~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~--~~~~g~--~~~-~g~i~vd~~~~t-~~~~i~a~GD~~~~~~-~~  151 (180)
T 2ywl_A           80 GVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTL--PSLLGL--TRR-GAYIDTDEGGRT-SYPRVYAAGVARGKVP-GH  151 (180)
T ss_dssp             EEEECSSSEEEECSSC-EEEEEEEEECCTTCCHH--HHHHTC--CEE-TTEECCCTTCBC-SSTTEEECGGGGTCCS-CC
T ss_pred             EEEEcCCEEEEEECCC-EEEECEEEECCCCCCCc--cccCCC--Ccc-CceEEeCCCCCc-CCCCEEEeecccCcch-hh
Confidence            8876666678888888 89999999999999853  333333  566 899999999998 7999999999998754 26


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCC
Q 046865          284 GFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      ++.|..||+++|.||...+++.+
T Consensus       152 ~~~A~~~g~~aa~~i~~~~~~~~  174 (180)
T 2ywl_A          152 AIISAGDGAYVAVHLVSDLRGEP  174 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhHHHHHHHHHHHhhhcc
Confidence            78999999999999998887753

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.84  E-value=1.9e-19  Score=172.41  Aligned_cols=197  Identities=14%  Similarity=0.182  Sum_probs=119.1

Q ss_pred             eEEeccEEEEccCCCCCCCCCh---H-----HHH-HHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEE
Q 046865           98 RRVVYDYLVIATGHKDPVPKTR---T-----ERL-NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVH  168 (369)
Q Consensus        98 ~~~~~d~lviAtG~~~~~p~~~---~-----~~~-~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~  168 (369)
                      +++.+++||+|||..|.+|+..   .     ..+ ............+|+|+|||+|.+|+|++..|.+...+.+|+++.
T Consensus       199 ~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~  278 (501)
T 4b63_A          199 SARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIM  278 (501)
T ss_dssp             EEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred             EEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEe
Confidence            4688999999999999888642   1     111 112111122356789999999999999999998777789999999


Q ss_pred             cCcccccc---------CCcchHHHH-------------------------------HHH-----HH-----hCCcEEEe
Q 046865          169 KGSRLLEF---------IGPKAGDKT-------------------------------LDW-----LI-----SKKVDVKL  198 (369)
Q Consensus       169 ~~~~~l~~---------~~~~~~~~~-------------------------------~~~-----l~-----~~gv~i~~  198 (369)
                      |++.+.|.         +.++..+.+                               .+.     +.     .....+..
T Consensus       279 R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~  358 (501)
T 4b63_A          279 RDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILP  358 (501)
T ss_dssp             SSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEEC
T ss_pred             CCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecC
Confidence            98765432         122211111                               011     10     01224555


Q ss_pred             CceeeeccCCC--CCe------------EEEcCCCcEEeccEEEEcCCCCCCch-hhcccccCCCCCCCCcEEeCCceee
Q 046865          199 GQRVNLDSVSE--GSD------------TYLTSTGDTIKADCHFLCTGKPVGSD-WLKDTILKDSLDTDGMLMVDENLRV  263 (369)
Q Consensus       199 ~~~v~~i~~~~--~~~------------~v~~~~g~~i~~d~vi~a~G~~p~~~-~l~~~~~~~~~~~~g~i~vd~~l~~  263 (369)
                      +..+..++...  +.+            .+.+.+|+++++|.||+|||++|+.+ +|....-.+..+.+|.+.|+.+++.
T Consensus       359 ~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~  438 (501)
T 4b63_A          359 ERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRV  438 (501)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBB
T ss_pred             CcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEE
Confidence            55554443221  112            23456788999999999999998753 3333222335677888999888765


Q ss_pred             c-------cCCCeEEecccC---CccccchhHHHHHHHHHH
Q 046865          264 K-------GQKNIFAIGDIT---DIREIKQGFLAQKHAQVA  294 (369)
Q Consensus       264 ~-------~~~~i~a~GD~~---~~~~~~~~~~A~~~g~~~  294 (369)
                      .       ..++||+.|-+-   +...+.+...|.+.++++
T Consensus       439 ~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~~a~R~~~I~  479 (501)
T 4b63_A          439 EMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMV  479 (501)
T ss_dssp             CCCTTTBCTTCEEEECSCCHHHHCTTTTSSTTHHHHHHHHH
T ss_pred             eecCCccCCCceEEecCCCcccCCcchhhHHHHHHHHHHHH
Confidence            2       135699998432   122223445677777654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.65  E-value=2.9e-16  Score=135.20  Aligned_cols=158  Identities=18%  Similarity=0.117  Sum_probs=108.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc-----------------ccccCC-------cchHHHHHHHHHhC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-----------------LLEFIG-------PKAGDKTLDWLISK  192 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~-----------------~l~~~~-------~~~~~~~~~~l~~~  192 (369)
                      -+++|||+|++|+++|..|++  .+.+|+++++...                 ++..++       ..+.+.+.+.+++.
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~--~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~   81 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGL   81 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcC
Confidence            479999999999999999985  3899999998721                 111111       26677788888887


Q ss_pred             -CcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCCCCchh-----------------------hcccccCC
Q 046865          193 -KVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKPVGSDW-----------------------LKDTILKD  247 (369)
Q Consensus       193 -gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~p~~~~-----------------------l~~~~~~~  247 (369)
                       |++++ +++|+++..+++.+ .+.+.+|+++++|.||+|+|..++...                       +...++  
T Consensus        82 ~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~--  158 (232)
T 2cul_A           82 RPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGF--  158 (232)
T ss_dssp             TTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTC--
T ss_pred             CCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCC--
Confidence             99999 56888887655543 567788888999999999999543221                       111111  


Q ss_pred             CCCCC--------Cc-------EEeCC------ceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHh
Q 046865          248 SLDTD--------GM-------LMVDE------NLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       248 ~~~~~--------g~-------i~vd~------~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~  302 (369)
                      .+...        |.       ..+..      .+..++.|+|||+|||+ ...  +...|..||+.+|+||...+
T Consensus       159 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g--~~~~~~~~g~~~a~~i~~~l  231 (232)
T 2cul_A          159 RFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG--DYARMSEEGKRLAEHLLHEL  231 (232)
T ss_dssp             CEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC--CHHHHHHHHHHHHHHHHHHC
T ss_pred             eEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc--cHHHHHHHHHHHHHHHHhhc
Confidence            11100        00       11110      12223799999999999 543  56788999999999998754

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.63  E-value=9.4e-17  Score=152.63  Aligned_cols=203  Identities=14%  Similarity=0.072  Sum_probs=117.3

Q ss_pred             cceEEEee-eeeee--cceE---Eec-CCeEEeccEEEEccCCCCCCCCC-------hHHHHHHHHHHHHHHhc------
Q 046865           76 NGRIVASP-AINIT--ENEV---LTA-EGRRVVYDYLVIATGHKDPVPKT-------RTERLNQYQAENQKIKS------  135 (369)
Q Consensus        76 ~~~~~~~~-~~~~~--~~~v---~~~-~g~~~~~d~lviAtG~~~~~p~~-------~~~~~~~~~~~~~~~~~------  135 (369)
                      +++++.+. + .+.  ...+   ... ++.++.+|.+|+|||..+.++..       ..+.+.-..........      
T Consensus       133 gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~  211 (472)
T 2e5v_A          133 GIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQF  211 (472)
T ss_dssp             TCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEE
T ss_pred             CCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEE
Confidence            45665554 4 543  2332   222 23357899999999998654332       22222222111000111      


Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcch--------HHHHHHHHHhCCcEEEeCceeeeccC
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA--------GDKTLDWLISKKVDVKLGQRVNLDSV  207 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~--------~~~~~~~l~~~gv~i~~~~~v~~i~~  207 (369)
                      ....+++|+|  +++++..+..  .+..+ +..+++++++.++++.        ...+.+.+++.+. ++++...  +. 
T Consensus       212 ~p~~~~~ggg--~~~~ae~~~~--~G~~~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~~-  282 (472)
T 2e5v_A          212 HPTVTSLDGE--VFLLTETLRG--EGAQI-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--IE-  282 (472)
T ss_dssp             EEEEECGGGC--CEECCTHHHH--TTCEE-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--CT-
T ss_pred             EeEEEccCCC--ceeeehhhcC--CceEE-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--hH-
Confidence            1123455666  7788777753  36666 7788889998776654        6677777776664 4433221  11 


Q ss_pred             CCCCeEEEcCCCcEEe-ccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc---cch
Q 046865          208 SEGSDTYLTSTGDTIK-ADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE---IKQ  283 (369)
Q Consensus       208 ~~~~~~v~~~~g~~i~-~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~---~~~  283 (369)
                        .     +  .++++ .+.++++.|..|+ +.+.....  .....|.|.||+++|| +.|+|||+|||++...   ..+
T Consensus       283 --~-----~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~--~~~~~GGI~vd~~~~t-~ipgLyAaGd~a~~~~hg~~rl  349 (472)
T 2e5v_A          283 --D-----F--ERKFPVVAKYLARHGHNYK-VKIPIFPA--AHFVDGGIRVNIRGES-NIVNLYAIGEVSDSGLHGANRL  349 (472)
T ss_dssp             --T-----H--HHHCHHHHHHHHHTTCCTT-SCEECEEE--EEEESCEEECCTTCBC-SSBTEEECGGGEECSSSTTSCC
T ss_pred             --H-----H--HHHhHHHHHHHHHhCcCcc-cceEeehh--hceeCCCeEECCCCcc-ccCCEEecchhcccccCCCCCC
Confidence              0     1  01233 4777888999998 55543221  1234689999999999 7999999999987211   134


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 046865          284 GFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~  301 (369)
                      +..|..++.+.++++...
T Consensus       350 ~~~sl~~~~v~G~~a~~~  367 (472)
T 2e5v_A          350 ASNSLLEGLVFGINLPRY  367 (472)
T ss_dssp             TTHHHHHHHHHHHHGGGT
T ss_pred             CcccHHHHHHHHHHHHHH
Confidence            556666655555555433

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.46  E-value=4e-15  Score=140.08  Aligned_cols=97  Identities=12%  Similarity=0.028  Sum_probs=75.9

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCC--------CCCCchhhcccccCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG--------KPVGSDWLKDTILKDSL  249 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G--------~~p~~~~l~~~~~~~~~  249 (369)
                      +..+...+.+.+++.| +|+++++|++|+.+++.+.|++.+|+++++|.||+|+|        +.|+.+......+.. +
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~-~  280 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE-G  280 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH-C
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh-C
Confidence            4456666777777778 99999999999877777888888898899999999999        888876554443332 2


Q ss_pred             CCCCcEEeCCceeeccCCCeEEecccCC
Q 046865          250 DTDGMLMVDENLRVKGQKNIFAIGDITD  277 (369)
Q Consensus       250 ~~~g~i~vd~~l~~~~~~~i~a~GD~~~  277 (369)
                      .....++|+..+++ ..++||+.||+..
T Consensus       281 ~~~~~~kv~~~~~~-~~~~i~~~~d~~~  307 (431)
T 3k7m_X          281 HGGQGLKILIHVRG-AEAGIECVGDGIF  307 (431)
T ss_dssp             CCCCEEEEEEEEES-CCTTEEEEBSSSS
T ss_pred             CCcceEEEEEEECC-CCcCceEcCCCCE
Confidence            23345899999998 5899999999854

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.37  E-value=5.5e-14  Score=130.70  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=32.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ++||+|||||++|+++|..|+ +|.+|+|||+++..+
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g   40 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG   40 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            589999999999999999986 599999999988653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.34  E-value=4.8e-12  Score=122.46  Aligned_cols=142  Identities=15%  Similarity=0.164  Sum_probs=81.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC-Ccccccc-----c---------c---ccc--------------c
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE-YFEITWA-----S---------L---RAM--------------V   58 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~-~~~~~~~-----~---------~---~~~--------------~   58 (369)
                      ..+||||||||+||++||..|+ .|.+|+|||++. .++....     .         +   ...              .
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l  106 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL  106 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence            4689999999999999999986 599999999974 2221000     0         0   000              0


Q ss_pred             ----CCcccc-------ccee-ccccc---cccceEEEeeeeeee--cc---eEEecCCeEEeccEEEEccCCCCCCCCC
Q 046865           59 ----EPSFGE-------RSVI-NHTDY---LVNGRIVASPAINIT--EN---EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (369)
Q Consensus        59 ----~~~~~~-------~~~~-~~~~~---~~~~~~~~~~~~~~~--~~---~v~~~~g~~~~~d~lviAtG~~~~~p~~  118 (369)
                          .+....       ..+. ...+.   ..+++++.+.+..+.  ..   .|.+.+|.++.+|.+|+|||..+..+.+
T Consensus       107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i  186 (651)
T 3ces_A          107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIH  186 (651)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEE
T ss_pred             hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCccc
Confidence                000000       0000 00011   135777788888774  23   3566778889999999999998664432


Q ss_pred             hHHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEc
Q 046865          119 RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK  169 (369)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~  169 (369)
                      ....  .+        .+.+   +| +.++++++..|.+  .|.+|+.+..
T Consensus       187 ~G~~--~~--------~~gr---iG-g~~a~eLA~~L~~--lG~~v~~~~t  221 (651)
T 3ces_A          187 IGLD--NY--------SGGR---AG-DPPSIPLSRRLRE--LPLRVGRLKT  221 (651)
T ss_dssp             CC---------------------------CCHHHHHHHT--TTCCEEEECC
T ss_pred             cCcc--cC--------CCCC---cc-chhhhHHHHHHHh--cCCeEEEecC
Confidence            2111  11        1223   45 7889999999974  4888887753

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.33  E-value=7.1e-12  Score=111.03  Aligned_cols=166  Identities=13%  Similarity=-0.010  Sum_probs=109.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc--------------------------------------CC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------IG  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~--------------------------------------~~  178 (369)
                      .+++|||+|++|+.+|..|++ .++.+|+++++.+.+...                                      ..
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~-~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  118 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  118 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT-STTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             cCEEEECccHHHHHHHHHHHH-cCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence            479999999999999999984 248999999998754210                                      11


Q ss_pred             cchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe-EEEcC---------CC-----cEEeccEEEEcCCCCCCchhhcc
Q 046865          179 PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD-TYLTS---------TG-----DTIKADCHFLCTGKPVGSDWLKD  242 (369)
Q Consensus       179 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---------~g-----~~i~~d~vi~a~G~~p~~~~l~~  242 (369)
                      .++...+.+.+.+ .|+++++++.|.++..+++.+ .+.+.         +|     .++++|.||+|+|..++......
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~  198 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV  198 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence            2344456666655 699999999999887655432 23321         22     57999999999998765422111


Q ss_pred             c-----ccCCCCCCCCcEEeCC-------ceeeccCCCeEEecccCCc----c-ccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          243 T-----ILKDSLDTDGMLMVDE-------NLRVKGQKNIFAIGDITDI----R-EIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       243 ~-----~~~~~~~~~g~i~vd~-------~l~~~~~~~i~a~GD~~~~----~-~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      .     ++...+.+...+.++.       ..++ ..|++|++||++..    + ..+....+..+|+.+|.+|...+..
T Consensus       199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~-~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~  276 (284)
T 1rp0_A          199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLTRE-VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGL  276 (284)
T ss_dssp             HHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEE-EETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhhccCCCCcCCcCCchhhhhhHHHhhcccc-ccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhh
Confidence            1     1111122222343332       3344 57999999998632    1 1122346789999999999988754

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.24  E-value=3e-11  Score=111.42  Aligned_cols=55  Identities=11%  Similarity=-0.026  Sum_probs=48.0

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+++.|++++++++|++++.+++.+.|++.+| ++.+|.||+|+|..
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~  208 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAW  208 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChh
Confidence            47788888999999999999999999987666677888777 89999999999974

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.18  E-value=1.7e-10  Score=111.28  Aligned_cols=46  Identities=20%  Similarity=0.212  Sum_probs=39.0

Q ss_pred             CCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          258 DENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       258 d~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      ++.|+++..||+|++|.+++....   ..|..||.+|+.|++..+.|++
T Consensus       381 ~~tLe~k~~~gLf~AGqinGt~Gy---eEAaaqGl~AG~nAa~~~~~~~  426 (637)
T 2zxi_A          381 YPTLETKKIRGLFHAGNFNGTTGY---EEAAGQGIVAGINAALRAFGKE  426 (637)
T ss_dssp             CTTSBBSSSBTEEECGGGGTBCSH---HHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CccccccCCCCEEEeeecCCcchH---HHHHHHHHHHHHHHHHHhcCCC
Confidence            467899889999999999987542   4788899999999999988865

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.18  E-value=1.3e-10  Score=108.30  Aligned_cols=56  Identities=14%  Similarity=0.111  Sum_probs=49.0

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .++.+.+.+.+++.||+++++++|+.++.+++.+.+.+.+| ++.+|.||+|+|..+
T Consensus       132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          132 KDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            46778888999999999999999999987666778888887 899999999999875

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.14  E-value=4.2e-11  Score=115.89  Aligned_cols=45  Identities=18%  Similarity=0.238  Sum_probs=38.2

Q ss_pred             CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      +.|+++..+|+|++|++++....   ..|..||.+|+.|++..+.|++
T Consensus       371 ~tle~k~~~gLf~AGqi~g~~Gy---~eA~a~G~~AG~naa~~~~~~~  415 (641)
T 3cp8_A          371 STMETRPVENLFFAGQINGTSGY---EEAAAQGLMAGINAVRKILGKE  415 (641)
T ss_dssp             TTSBBSSSBTEEECSGGGTBCCH---HHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CcccccCcCCEEEEEeecCCccH---HHHHHHHHHHHHHHHHHhcCCC
Confidence            47898779999999999987542   3788999999999999888865

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.13  E-value=3.9e-10  Score=104.05  Aligned_cols=56  Identities=9%  Similarity=-0.130  Sum_probs=48.2

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ..+.+.+.+.+++.|++++++++|.+++.+++.+.+++.+| ++.+|.||+|+|...
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence            47888899999999999999999999887666667777777 899999999999863

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.10  E-value=1.1e-09  Score=100.94  Aligned_cols=56  Identities=13%  Similarity=-0.136  Sum_probs=47.3

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ..+...+.+.+++.|++++.+++|++++.+++.+. +++.+| ++.+|.||+|+|...
T Consensus       149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            46778888999999999999999999876666655 777777 899999999999763

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.10  E-value=8.5e-10  Score=101.06  Aligned_cols=56  Identities=7%  Similarity=-0.166  Sum_probs=48.3

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCC--cEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTG--DTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g--~~i~~d~vi~a~G~~  234 (369)
                      ..+.+.+.+.+++.|++++++++|++++.+++. +.+.+.+|  .++.+|.||+|+|..
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~  208 (369)
T 3dme_A          150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLH  208 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcc
Confidence            478888999999999999999999999876554 77888887  489999999999986

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.08  E-value=1.4e-09  Score=101.17  Aligned_cols=56  Identities=16%  Similarity=-0.074  Sum_probs=46.4

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ..+.+.+.+.+++.|++++++++|+++..+++. ..+++.+| ++.+|.||+|+|...
T Consensus       174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          174 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            367888889999999999999999998765554 45677777 799999999999753

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.08  E-value=1.5e-09  Score=100.39  Aligned_cols=72  Identities=18%  Similarity=0.076  Sum_probs=57.3

Q ss_pred             CCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          161 EKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       161 ~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      +....++.+....+.  +..+...+.+.+++.|++++++++|++++.+++.+.+++.+| ++.+|.||+|+|...
T Consensus       134 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          134 ENYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             TTEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             CCceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence            456777777655443  347888899999999999999999999887666677777666 799999999999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.06  E-value=9.4e-10  Score=103.53  Aligned_cols=56  Identities=21%  Similarity=0.194  Sum_probs=48.6

Q ss_pred             cchHHHHHHHHHhCCcEEEeCc---eeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQ---RVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~---~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+++.|++|++++   +|+++..+++.+. |++.+|+++.+|.||+|+|..
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~  220 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGAS  220 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCC
Confidence            4678888899999999999999   9999877666665 888888889999999999975

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.06  E-value=1.7e-10  Score=110.62  Aligned_cols=58  Identities=19%  Similarity=0.212  Sum_probs=49.9

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      +.+.+.+.+.+++.|++++++++|+++..+++.+ .+++.+|+++++|.||+|+|..+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            4677888889999999999999999987766544 478888989999999999999874

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.99  E-value=1.3e-10  Score=111.28  Aligned_cols=55  Identities=9%  Similarity=-0.035  Sum_probs=47.5

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .+.+.+.+.+++.|++|+++++|++|..+++.+ .|++++|+++.+|.||++++..
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            678889999999999999999999998877654 4789999999999999988754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.99  E-value=1.2e-08  Score=101.31  Aligned_cols=56  Identities=5%  Similarity=-0.029  Sum_probs=48.8

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc-EEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD-TIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+++.|++|+++++|++++.+++.+.+.+.+|+ ++.+|.||+|+|..
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~  468 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHR  468 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence            478888889999999999999999999877777888888887 89999999999986

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.98  E-value=5.5e-09  Score=103.72  Aligned_cols=56  Identities=7%  Similarity=0.016  Sum_probs=49.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+++.|++++++++|++++.+++.+.|++.+|.++.+|.||+|+|..
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~  472 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ  472 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcc
Confidence            47788888999999999999999999987777778888888889999999999986

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.97  E-value=5.6e-09  Score=96.92  Aligned_cols=55  Identities=9%  Similarity=-0.080  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+  .|++++.+++|++++.+++.+.+++.+|+++++|.||.|.|....
T Consensus       100 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          100 SIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             HHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             HHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            3444444443  489999999999998777778888999989999999999998643

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.97  E-value=2.8e-10  Score=106.57  Aligned_cols=60  Identities=13%  Similarity=0.080  Sum_probs=49.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhh
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL  240 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l  240 (369)
                      ..+.+.+.+.+++.|++|+++++|++++.+++.+ + +.+|+++++|.||+|+|......++
T Consensus       189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          189 KAVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETVKLI  248 (421)
T ss_dssp             HHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence            5788899999999999999999999998776666 5 4677899999999999976444443

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.92  E-value=6e-10  Score=107.29  Aligned_cols=50  Identities=12%  Similarity=-0.088  Sum_probs=40.7

Q ss_pred             HHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          185 TLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       185 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .....++.|++|+++++|++|+.+++.+.+.+.+|+++++|.||+|++..
T Consensus       218 ~~~l~~~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          218 SERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             HHHHHHHHGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHHHcCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHH
Confidence            33333444789999999999987777788888899899999999999864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.92  E-value=7.4e-09  Score=97.64  Aligned_cols=57  Identities=16%  Similarity=0.234  Sum_probs=48.4

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ..+.+.+.+.+++.||+++++++|+++..+++. ..+++.+|+++.+|.||+|+|..+
T Consensus       134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            467788888999999999999999998765554 667788887899999999999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.92  E-value=1.2e-08  Score=93.66  Aligned_cols=55  Identities=15%  Similarity=0.059  Sum_probs=47.0

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+++.|++++.+++|++++.+++.+.+++.+| ++.+|.||+|+|..
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~  203 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTW  203 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCcc
Confidence            36778888899999999999999999887666677777777 59999999999975

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.91  E-value=3.4e-09  Score=99.12  Aligned_cols=56  Identities=18%  Similarity=0.047  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCC--eEEEcCCCc--EEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS--DTYLTSTGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~--~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++.|++++.+++|+.++.+++.  +.+.+.+|+  ++.+|.||.|+|...
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            56677778888889999999999988765554  455667887  799999999999753

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.91  E-value=9.4e-09  Score=95.69  Aligned_cols=55  Identities=18%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.+.+.+.+++  ++++++++|+.++.+++.+.+++.+|+++.+|.||.|.|....
T Consensus       128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSA  182 (407)
T ss_dssp             HHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCS
T ss_pred             HHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChH
Confidence            566777777766  8999999999998777778888999999999999999998643

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.90  E-value=2.5e-09  Score=87.77  Aligned_cols=97  Identities=19%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcc----ccccee-cccccc--ccceEEEeeee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF----GERSVI-NHTDYL--VNGRIVASPAI   85 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~--~~~~~~~~~~~   85 (369)
                      +||+|||||++|+.+|..|+ .|.+|+|||+++........+..+  +.+    ....+. ...+.+  .+++++.+++.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~~v~   79 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNY--PGLLDEPSGEELLRRLEAHARRYGAEVRPGVVK   79 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCS--TTCTTCCCHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhcc--CCCcCCCCHHHHHHHHHHHHHHcCCEEEeCEEE
Confidence            79999999999999999986 599999999987432111111000  011    000111 111111  25677666666


Q ss_pred             eeecc----eEEecCCeEEeccEEEEccCCCC
Q 046865           86 NITEN----EVLTAEGRRVVYDYLVIATGHKD  113 (369)
Q Consensus        86 ~~~~~----~v~~~~g~~~~~d~lviAtG~~~  113 (369)
                      .++..    .+.+.++ ++.+|.+|+|+|..|
T Consensus        80 ~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           80 GVRDMGGVFEVETEEG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             EEEECSSSEEEECSSC-EEEEEEEEECCTTCC
T ss_pred             EEEEcCCEEEEEECCC-EEEECEEEECCCCCC
Confidence            66532    4666677 899999999999986

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.89  E-value=1.6e-08  Score=93.85  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .+...+.+.+++.|++++++++|++++.+++.+.+.+.+| ++.+|.||+|+|..
T Consensus       154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          154 GTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence            5677788888899999999999999876666666776665 79999999999975

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.89  E-value=2.4e-09  Score=102.26  Aligned_cols=135  Identities=17%  Similarity=0.152  Sum_probs=95.5

Q ss_pred             eccEEEEccCCCCCCCCChHHHH---------HHHHHH---------HHH--HhcCCeEEEEcCChhHHHHHHHHhhhCC
Q 046865          101 VYDYLVIATGHKDPVPKTRTERL---------NQYQAE---------NQK--IKSARSILIVGGGPTGVELAGEIAVDFP  160 (369)
Q Consensus       101 ~~d~lviAtG~~~~~p~~~~~~~---------~~~~~~---------~~~--~~~~~~v~vvG~G~~g~e~a~~l~~~~~  160 (369)
                      .||++++++|+.|..|++....+         .+....         ...  .....+|+|||||++|+.+|..|++  .
T Consensus        37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~--~  114 (497)
T 2bry_A           37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELAL--L  114 (497)
T ss_dssp             HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHH--C
Confidence            56889999999987665432221         111111         000  1235789999999999999999985  3


Q ss_pred             CCeEEEEEcCcccccc-----CC----------------------------cchHHHHHHHHHhCCcEEEeCceeeeccC
Q 046865          161 EKKVTLVHKGSRLLEF-----IG----------------------------PKAGDKTLDWLISKKVDVKLGQRVNLDSV  207 (369)
Q Consensus       161 ~~~v~lv~~~~~~l~~-----~~----------------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  207 (369)
                      |.+|+++++.+.+...     .+                            .++.+.+.+.+++.||++++++.|.+++.
T Consensus       115 G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~  194 (497)
T 2bry_A          115 GARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQP  194 (497)
T ss_dssp             TCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEC
T ss_pred             CCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            8999999988654210     00                            35566777888889999999999998875


Q ss_pred             C---CCCeEEEc--C-CC--cEEeccEEEEcCCCCCCc
Q 046865          208 S---EGSDTYLT--S-TG--DTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       208 ~---~~~~~v~~--~-~g--~~i~~d~vi~a~G~~p~~  237 (369)
                      +   ++.+.+++  . +|  +++++|.||.|+|..+..
T Consensus       195 ~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          195 PPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             CCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             ecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            3   23456665  4 56  479999999999998654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.85  E-value=5.7e-09  Score=100.11  Aligned_cols=52  Identities=13%  Similarity=-0.057  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      .+.+.+.+.+++.|++++++++|+++..+++  .+++.+|+++.+|.||+++..
T Consensus       223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~--~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNK--TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHHHHTSCGGGEEESGGGCEEEEETTTT--EEEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHHHHhcCeeeecceEEEEEEccCC--EEEEcCCCEEECCEEEECCCH
Confidence            5677788888889999999999999986554  466789999999999998753

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.85  E-value=8.7e-09  Score=100.18  Aligned_cols=56  Identities=18%  Similarity=0.064  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCC-CCCeEEEcC-CC--cEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGSDTYLTS-TG--DTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~~v~~~-~g--~~i~~d~vi~a~G~~p  235 (369)
                      .+...+.+.+++.|++++.+++|+.+..+ ++...|++. +|  .++.+|.||.|+|...
T Consensus       129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            56677888888899999999999988765 445667766 66  5799999999999854

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.83  E-value=2.9e-09  Score=99.68  Aligned_cols=57  Identities=14%  Similarity=0.092  Sum_probs=47.2

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ..+.+.+.+.++++|++|+++++|+++..+++.+. |++ +|+++++|.||+|+|....
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHH
Confidence            46888999999999999999999999987666554 555 4778999999999987543

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.83  E-value=5.2e-09  Score=89.64  Aligned_cols=99  Identities=19%  Similarity=0.066  Sum_probs=61.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC-ccccccccccccC---Cc----cc------ccce----eccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWASLRAMVE---PS----FG------ERSV----INHTDY   73 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~-~~~~~~~~~~~~~---~~----~~------~~~~----~~~~~~   73 (369)
                      ++||+|||||++|+++|..|+ .|.+|+|||++.. .+ .+. ......   ..    +.      ...+    ....+.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G-~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~   80 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM-MPF-LPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG   80 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT-CCS-SCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC-ccc-CccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHc
Confidence            589999999999999999997 5999999999732 22 110 000000   00    00      0000    001111


Q ss_pred             cccceEEEeeeeeeecc-----eEEecCCeEEeccEEEEccCCCC
Q 046865           74 LVNGRIVASPAINITEN-----EVLTAEGRRVVYDYLVIATGHKD  113 (369)
Q Consensus        74 ~~~~~~~~~~~~~~~~~-----~v~~~~g~~~~~d~lviAtG~~~  113 (369)
                      ..+++++..++..+...     .+.+.+|.++.+|++|+|+|...
T Consensus        81 ~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           81 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             CCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            12567776677666432     35667788899999999999864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.83  E-value=1.7e-08  Score=91.60  Aligned_cols=49  Identities=16%  Similarity=0.114  Sum_probs=39.9

Q ss_pred             HHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          185 TLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       185 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ++...++.|++|+++++|++++.+++.+.+++.+|+++.+|.||+|+..
T Consensus       115 ~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          115 IKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            3333344489999999999998877778888888888999999999873

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.77  E-value=3e-08  Score=90.20  Aligned_cols=95  Identities=12%  Similarity=-0.016  Sum_probs=78.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------------------ccCC-----------cchHHH
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------------EFIG-----------PKAGDK  184 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------------------~~~~-----------~~~~~~  184 (369)
                      .+++|||+|+.|+.+|..|+++  +.+|+++++.+.+.                     +.++           .++.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRS--GLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAY   81 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHS--SCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHH
Confidence            3799999999999999999853  88999999886531                     1110           467778


Q ss_pred             HHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCC
Q 046865          185 TLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       185 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      +.+.+++.|++++++++|..++.+++.+. +++.+| ++++|.+|+|+|..
T Consensus        82 l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           82 LAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence            88888899999999999999887766677 888887 89999999999963

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.77  E-value=8.9e-09  Score=97.12  Aligned_cols=70  Identities=17%  Similarity=0.118  Sum_probs=50.9

Q ss_pred             CeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccC---------------CCCCe-EEEcCCCcEE--e
Q 046865          162 KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV---------------SEGSD-TYLTSTGDTI--K  223 (369)
Q Consensus       162 ~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~---------------~~~~~-~v~~~~g~~i--~  223 (369)
                      ....++.+....+  .+..+...+.+.+++.|++++++++|++++.               +++.+ .+.+.+| ++  .
T Consensus       166 ~~~~~~~~~~~~~--~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~  242 (448)
T 3axb_A          166 VEGAVLIRSAGFL--DAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEV  242 (448)
T ss_dssp             CCEEEEESSEEEC--CHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEE
T ss_pred             ceEEEEeCCCeEE--cHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeec
Confidence            3334554443322  1237888899999999999999999998875               34433 5667777 68  9


Q ss_pred             ccEEEEcCCCC
Q 046865          224 ADCHFLCTGKP  234 (369)
Q Consensus       224 ~d~vi~a~G~~  234 (369)
                      +|.||+|+|..
T Consensus       243 Ad~VV~AtG~~  253 (448)
T 3axb_A          243 GEKLVVAAGVW  253 (448)
T ss_dssp             EEEEEECCGGG
T ss_pred             CCEEEECCCcC
Confidence            99999999975

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.77  E-value=7.7e-10  Score=108.32  Aligned_cols=60  Identities=15%  Similarity=0.103  Sum_probs=45.1

Q ss_pred             HhCCcEEEeCceeeeccCCCC--C-eEEEc---CCCc--EEeccEEEEcCCCCCCchhhcccccCCCC
Q 046865          190 ISKKVDVKLGQRVNLDSVSEG--S-DTYLT---STGD--TIKADCHFLCTGKPVGSDWLKDTILKDSL  249 (369)
Q Consensus       190 ~~~gv~i~~~~~v~~i~~~~~--~-~~v~~---~~g~--~i~~d~vi~a~G~~p~~~~l~~~~~~~~~  249 (369)
                      ++.|++|++++.|+++..+++  . ..|++   .+|+  ++.+|.||+|+|..|++.+|..++++...
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~~  338 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLG  338 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCCS
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCccc
Confidence            345899999999999876532  2 23333   3454  68899999999999999999888876543

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.77  E-value=6.9e-09  Score=100.63  Aligned_cols=56  Identities=11%  Similarity=0.129  Sum_probs=47.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc--CCC-cEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT--STG-DTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~--~~g-~~i~~d~vi~a~G~~  234 (369)
                      ..+.+.+.+.+++.|++|+.+++|+.++.+++.+.+++  .+| +++.+|.||.|.|..
T Consensus       148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~  206 (570)
T 3fmw_A          148 SRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGR  206 (570)
T ss_dssp             HHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSS
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCC
Confidence            35677788888888999999999999988777777777  678 689999999999974

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.75  E-value=6.2e-08  Score=98.38  Aligned_cols=56  Identities=23%  Similarity=0.103  Sum_probs=46.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ..+...+.+.+++.|++++++++|++++.+++.+ .+.+.+| ++.+|.||+|+|...
T Consensus       151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            4788889999999999999999999987655543 4667777 799999999999853

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.74  E-value=3.3e-08  Score=88.58  Aligned_cols=99  Identities=19%  Similarity=0.038  Sum_probs=78.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC--cccc--------ccC----CcchHHHHHHHHHhCCcEEEeCcee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG--SRLL--------EFI----GPKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~--~~~l--------~~~----~~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      .+++|||+|+.|+.+|..|++.  +.+|+++++.  ..+.        +.+    ..++.+.+.+.+++.|++++. +.|
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   92 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARY--MLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIV   92 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCE
T ss_pred             cCEEEECccHHHHHHHHHHHHC--CCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            5899999999999999999864  8899999986  1111        222    235677778888889999999 888


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.+++...+.+.+|+++.+|.+|+|+|..|...
T Consensus        93 ~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           93 EKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccC
Confidence            888776667788888888999999999999987643

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.73  E-value=1.1e-08  Score=96.64  Aligned_cols=40  Identities=20%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      .++||+|||||++||+||..|+ .|++|+|+|+++.+|...
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   44 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT   44 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence            3589999999999999999997 599999999998887543

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.73  E-value=9.7e-09  Score=98.56  Aligned_cols=56  Identities=20%  Similarity=0.079  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCC---eEEEcCCCc--EEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS---DTYLTSTGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++.|++++.+++|+++..+++.   +.+...+|+  ++++|.||.|+|...
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            56677888888899999999999998876553   445556674  799999999999853

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.73  E-value=4.6e-08  Score=92.64  Aligned_cols=40  Identities=23%  Similarity=0.178  Sum_probs=36.1

Q ss_pred             cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          194 VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       194 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ++|+++++|++++.+++.+.|++.+|+++.+|.||+|++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCH
Confidence            7999999999998777778888999989999999999875

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.71  E-value=6.5e-08  Score=93.60  Aligned_cols=55  Identities=22%  Similarity=0.178  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHhC-CcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++. ||+++.+ +|+.++.+++.  ..+++.+|+++++|.||.|+|...
T Consensus       195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          195 LVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            6778888888888 9999999 89988754433  567788888899999999999754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.71  E-value=3.1e-08  Score=89.27  Aligned_cols=98  Identities=15%  Similarity=0.115  Sum_probs=79.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------------ccC----CcchHHHHHHHHHhCCcEEE
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------EFI----GPKAGDKTLDWLISKKVDVK  197 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------------~~~----~~~~~~~~~~~l~~~gv~i~  197 (369)
                      .+++|||+|+.|+.+|..|++  .+.+|+++++.+.+.               +.+    ..++...+.+.+++.+++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGM--RQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTIC   85 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence            579999999999999999985  489999999976432               111    24667778888888899999


Q ss_pred             eCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCC---CCCc
Q 046865          198 LGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGK---PVGS  237 (369)
Q Consensus       198 ~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~---~p~~  237 (369)
                      +++.|..++.+++ ...+.+.+|+ +.+|.+|+|+|.   .|..
T Consensus        86 ~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           86 LEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             CSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred             ccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence            9999999876655 5678888875 999999999999   6543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.70  E-value=1.2e-08  Score=95.63  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=74.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--cc--------C-CcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EF--------I-GPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~~--------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      .++|+|||||+.|+.+|..|++..++.+||+|++.+.+.  |.        . ..++...+.+.+++.||+++.+ +|+.
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~   80 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES   80 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence            368999999999999999998766778999999987532  11        1 1122333455677789999877 5777


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ++.++  .+|++++|+++++|.+|+|||.++.
T Consensus        81 Id~~~--~~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           81 IDPDA--NTVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             EETTT--TEEEETTCCEEECSEEEECCCCEEE
T ss_pred             EECCC--CEEEECCCCEEECCEEEEeCCCCcc
Confidence            76543  4678899999999999999998753

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.69  E-value=4.7e-08  Score=94.65  Aligned_cols=56  Identities=13%  Similarity=-0.018  Sum_probs=44.2

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcC---CC--cEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTS---TG--DTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g--~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+++.|++++++++|+.+..+++.+ .+++.   +|  .++.+|.||.|+|..
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~  231 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW  231 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcc
Confidence            4677888888999999999999999988766543 35443   23  379999999999975

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.68  E-value=2.1e-08  Score=96.86  Aligned_cols=55  Identities=13%  Similarity=0.008  Sum_probs=47.0

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCC----CeEEEcCCC---cEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEG----SDTYLTSTG---DTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~----~~~v~~~~g---~~i~~d~vi~a~G~~  234 (369)
                      .+...+.+.+++.|++++.+++|+.++.+++    .+.+++.++   .++.+|.||.|.|..
T Consensus       121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~  182 (535)
T 3ihg_A          121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNR  182 (535)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCc
Confidence            6777888888889999999999999987766    677777665   689999999999985

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.67  E-value=1e-07  Score=86.08  Aligned_cols=96  Identities=18%  Similarity=0.142  Sum_probs=76.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------------ccC----CcchHHHHHHHHHhCCcEEE
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------EFI----GPKAGDKTLDWLISKKVDVK  197 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------------~~~----~~~~~~~~~~~l~~~gv~i~  197 (369)
                      .+++|||+|+.|+.+|..|++  .+.+|+++++.+.+.               +.+    ..++.+.+.+.+++.+++++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGM--RGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYS   83 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            579999999999999999985  388999999876431               111    13556677777888899999


Q ss_pred             eCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          198 LGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       198 ~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .++.|..++.+++.+.+.+.+|+++.+|.+|+|+|..
T Consensus        84 ~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           84 LGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             ESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             eCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            9999998876555566777888889999999999984

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.67  E-value=9.6e-08  Score=86.19  Aligned_cols=101  Identities=17%  Similarity=0.120  Sum_probs=80.0

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc----cc------------cccCC-----cchHHHHHHHHHhCC
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS----RL------------LEFIG-----PKAGDKTLDWLISKK  193 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~----~~------------l~~~~-----~~~~~~~~~~l~~~g  193 (369)
                      ...+++|||+|+.|+.+|..|++.  +.+|+++++.+    .+            .+.++     +++...+.+.+++.|
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   98 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARA--EIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFG   98 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999864  88999999843    11            11222     367788888899999


Q ss_pred             cEEEeCceeeeccCCCCCeEEEc---CCCcEEeccEEEEcCCCCCCch
Q 046865          194 VDVKLGQRVNLDSVSEGSDTYLT---STGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       194 v~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ++++.++ +..++.+++.+.+.+   .++.++.+|.+|+|+|.+|...
T Consensus        99 v~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A           99 TEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             CEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             CEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            9999998 888877766777766   3667899999999999977543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.66  E-value=4.6e-08  Score=90.25  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=76.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---ccC---------CcchHHHHHHHHHhCCcEEEeCceee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFI---------GPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~~~---------~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      .-+++|||+|+.|+.+|..|.  .++.+|+++++.+.+.   +.+         ..++.....+.+++.||+++++++|+
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~--~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~   86 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFAT   86 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHT--TTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEE
T ss_pred             CCCEEEEcCcHHHHHHHHHHh--CCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEE
Confidence            457999999999999999994  5689999999887531   110         11233334667788999999999999


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .++.++.  .+++++|+++.+|.+|+|||.+|..+
T Consensus        87 ~id~~~~--~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           87 SIDPNNK--LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             EEETTTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEECCCC--EEEECCCCEEECCEEEEecCCCcCCC
Confidence            8875543  67788899999999999999987643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.64  E-value=9.2e-08  Score=84.66  Aligned_cols=99  Identities=19%  Similarity=0.106  Sum_probs=76.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------ccC----CcchHHHHHHHHHhC-CcEEEeCcee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------EFI----GPKAGDKTLDWLISK-KVDVKLGQRV  202 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------~~~----~~~~~~~~~~~l~~~-gv~i~~~~~v  202 (369)
                      .+++|||+|+.|+.+|..|++.  +.+|+++++.+...         +..    ..++...+.+.+++. +++++.+ +|
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v   79 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRA--RKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RV   79 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CE
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EE
Confidence            4799999999999999999853  78999999754211         111    125667777778776 7888765 78


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.+++...+.+.+|+++.+|.+|+|+|.+|..+
T Consensus        80 ~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           80 TDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             EEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCC
Confidence            888766666788888898999999999999987543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.63  E-value=1.5e-07  Score=85.97  Aligned_cols=97  Identities=19%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------c--------cC----CcchHHHHHHHHHhCCcEE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--------FI----GPKAGDKTLDWLISKKVDV  196 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------~--------~~----~~~~~~~~~~~l~~~gv~i  196 (369)
                      ..+++|||+|+.|+.+|..|++  .+.+|+++++.+.+.       +        .+    ..++.+.+.+.+++.++++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   91 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGM--NNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDV   91 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEE
Confidence            4579999999999999999985  489999999876431       1        11    1356677778888889999


Q ss_pred             EeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCCC
Q 046865          197 KLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       197 ~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      +.++.|..++.+++ .+.+.+.+|+++.+|.+|+|+|..
T Consensus        92 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           92 VLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             ECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred             EcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence            99999998876544 567888888899999999999984

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.63  E-value=5.2e-08  Score=91.55  Aligned_cols=100  Identities=16%  Similarity=0.176  Sum_probs=76.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhh-CCCCeEEEEEcCcccc--cc---------CCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          137 RSILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLL--EF---------IGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~-~~~~~v~lv~~~~~~l--~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      ++++|||||+.|+++|..|+++ ..+.+|+++++.+.+.  +.         ...++...+.+.+++.||+++. ..++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            6899999999999999999861 2488999999987541  11         1123334456778889999985 57877


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchh
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDW  239 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~  239 (369)
                      ++.+++  .+++++|+++.+|.+|+|+|.+|+.+.
T Consensus        84 id~~~~--~V~~~~g~~i~~d~lviAtG~~~~~~~  116 (437)
T 3sx6_A           84 IDAEAQ--NITLADGNTVHYDYLMIATGPKLAFEN  116 (437)
T ss_dssp             EETTTT--EEEETTSCEEECSEEEECCCCEECGGG
T ss_pred             EEcCCC--EEEECCCCEEECCEEEECCCCCcCccc
Confidence            765443  677888888999999999999887543

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.62  E-value=2.2e-07  Score=88.73  Aligned_cols=55  Identities=11%  Similarity=0.177  Sum_probs=47.2

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc---EEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD---TIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---~i~~d~vi~a~G~~  234 (369)
                      .+.+.+.+.+++.|++++.++++..++.+++.+++++.+++   ++.+|.||.|.|..
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  165 (499)
T 2qa2_A          108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR  165 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence            56778888888889999999999999877777888877765   79999999999975

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.62  E-value=8.5e-08  Score=89.01  Aligned_cols=101  Identities=20%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc----------cCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------FIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~----------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      +|+|+|||+|+.|+.+|..|++..++.+|++|++.+....          ..+.+....-.+.+.++||+++.+ .|+.+
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            6899999999999999999987666789999998865321          111111111124456789999876 56667


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchh
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDW  239 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~  239 (369)
                      +.++  ..+++.+|+++++|.+|+|+|.+++.+.
T Consensus        81 d~~~--~~v~~~~g~~i~yd~LviAtG~~~~~~~  112 (401)
T 3vrd_B           81 DPDK--KLVKTAGGAEFAYDRCVVAPGIDLLYDK  112 (401)
T ss_dssp             ETTT--TEEEETTSCEEECSEEEECCCEEECGGG
T ss_pred             EccC--cEEEecccceeecceeeeccCCccccCC
Confidence            5443  4677889999999999999999876543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.61  E-value=1.6e-07  Score=83.92  Aligned_cols=97  Identities=18%  Similarity=0.181  Sum_probs=75.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCcc---c--------cccCC-----cchHHHHHHHHHhCCcEEEeCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSR---L--------LEFIG-----PKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~---~--------l~~~~-----~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      +++|||+|+.|+.+|..|++.  +. +|+++++...   .        .+.++     +++.+.+.+.+++.|++++. +
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~--g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~   79 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRG--GVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-T   79 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-S
T ss_pred             eEEEECccHHHHHHHHHHHHC--CCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-E
Confidence            689999999999999999853  78 9999998531   0        12221     35667777888889999998 6


Q ss_pred             eeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          201 RVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      .+..++.+++...+.+.+|+++++|.+|+|+|..|..
T Consensus        80 ~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           80 AVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCC
Confidence            7887776555566777888899999999999987654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.60  E-value=7.6e-08  Score=89.59  Aligned_cols=99  Identities=13%  Similarity=0.074  Sum_probs=75.6

Q ss_pred             CeEEEEcCChhHHHHHHHHhh-hCCCCeEEEEEcCccccc-----------cCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          137 RSILIVGGGPTGVELAGEIAV-DFPEKKVTLVHKGSRLLE-----------FIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~-~~~~~~v~lv~~~~~~l~-----------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      ++|+|||||+.|+++|..|++ ...+.+|+++++.+.+..           ....++...+.+.+++.|++++.+ .|..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999986 225899999999875421           122355566778888899999988 7887


Q ss_pred             ccCCCCCeEEEcCCCc----EEeccEEEEcCCCCCCch
Q 046865          205 DSVSEGSDTYLTSTGD----TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~----~i~~d~vi~a~G~~p~~~  238 (369)
                      ++.++.  .+++.+++    ++++|.+|+|+|.+|+.+
T Consensus        81 i~~~~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDAKSS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EETTTT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeCCCC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            765544  34555554    499999999999988754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.59  E-value=2.9e-08  Score=86.61  Aligned_cols=38  Identities=26%  Similarity=0.306  Sum_probs=33.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      |++||+|||||||||+||+.|+ .|++|+||||++..|.
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG   39 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGG   39 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            3589999999999999999997 5999999999987764

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.59  E-value=3.3e-07  Score=87.65  Aligned_cols=58  Identities=17%  Similarity=0.059  Sum_probs=46.1

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc---CCCc--EEeccEEEEcCCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT---STGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~i~~d~vi~a~G~~p  235 (369)
                      +..+...+.+.+++.|++++++++|+++..+++...+++   .+|+  ++.+|.||.|+|...
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            346788888889999999999999999876554445555   3565  799999999999763

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.58  E-value=4e-07  Score=83.80  Aligned_cols=96  Identities=21%  Similarity=0.207  Sum_probs=77.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------------------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------------------  176 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------------------------------------  176 (369)
                      ..+|+|||+|+.|+.+|..|++  .|.+|+++++.+.+...                                       
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g   88 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQ--NGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN   88 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETT
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCC
Confidence            4689999999999999999985  38999999987643210                                       


Q ss_pred             -----CC-----------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          177 -----IG-----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       177 -----~~-----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                           ++           ..+.+.+.+.+++.|++++.+++|..++. + . .+++.+|+++++|.||.|+|..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           89 KSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V-G-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             EEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T-T-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             ceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C-EEEECCCCEEEcCEEEECCCccHH
Confidence                 00           23466777888889999999999998876 3 3 788888889999999999998754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.58  E-value=2.3e-07  Score=82.82  Aligned_cols=98  Identities=26%  Similarity=0.235  Sum_probs=75.7

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc--ccc-----c---c----CCcchHHHHHHHHHhCCcEEEeCceee
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL-----E---F----IGPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~--~~l-----~---~----~~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      +++|||+|+.|+.+|..|++  .+.+|+++++..  ...     +   .    ..+++.+.+.+.+++.|++++.+++|.
T Consensus         3 dvvIIG~G~aGl~aA~~l~~--~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~   80 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSAR--KGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSAS   80 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEE
Confidence            68999999999999999984  488999997531  111     0   0    113567778888888999999999998


Q ss_pred             eccCCC---CCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          204 LDSVSE---GSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       204 ~i~~~~---~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      .+..+.   +...+.+.+|+++++|.+|+|+|.+|..
T Consensus        81 ~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           81 KLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             EEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            885432   2567788888899999999999987654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.58  E-value=1.6e-07  Score=89.66  Aligned_cols=55  Identities=16%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc---EEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD---TIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---~i~~d~vi~a~G~~  234 (369)
                      .+.+.+.+.+++.|++++.+++|+.++.+++.+++++.+++   ++++|.||.|.|..
T Consensus       107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  164 (500)
T 2qa1_A          107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGR  164 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTT
T ss_pred             HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcc
Confidence            56778888888889999999999999877777777777664   79999999999975

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.57  E-value=4.6e-08  Score=93.75  Aligned_cols=56  Identities=16%  Similarity=0.103  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCC-CCCe-EEEcC-CCc--EEecc-EEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGSD-TYLTS-TGD--TIKAD-CHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~-~g~--~i~~d-~vi~a~G~~p  235 (369)
                      .+...+.+.+++.|++|+++++|+++..+ ++.+ .|... +++  ++.+| .||+|+|-..
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            67888889999999999999999998766 3432 24332 332  58996 9999999654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.56  E-value=3.3e-07  Score=82.34  Aligned_cols=98  Identities=15%  Similarity=0.178  Sum_probs=74.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc---c--------cccCC-----cchHHHHHHHHHhCCcEEEeCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFIG-----PKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~---~--------l~~~~-----~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      .+++|||+|+.|+.+|..|++  .+.+|+++++...   +        .+.++     .++.+.+.+.+++.|++++. .
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~   85 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGR--AQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-D   85 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-C
T ss_pred             CCEEEECCCHHHHHHHHHHHH--cCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-e
Confidence            579999999999999999985  3889999998721   0        11221     25667777888889999988 4


Q ss_pred             eeeeccCC--CCC-eEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          201 RVNLDSVS--EGS-DTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       201 ~v~~i~~~--~~~-~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      .+..++.+  ++. ..+.+.+|+++.+|.+|+|+|..|..
T Consensus        86 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           86 EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            77777654  332 56777788899999999999987754

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.55  E-value=1.4e-07  Score=83.25  Aligned_cols=37  Identities=27%  Similarity=0.348  Sum_probs=32.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~~~~   48 (369)
                      ..+||+|||||++|+++|..|+ . |.+|+|||+++..+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~g   76 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG   76 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCC
Confidence            4579999999999999999986 4 89999999987654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.55  E-value=3e-07  Score=85.19  Aligned_cols=97  Identities=14%  Similarity=0.088  Sum_probs=76.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc--------------c--------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--------------F--------------------------  176 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~--------------~--------------------------  176 (369)
                      .+++|||+|+.|+.+|..++++  |.+|+++++.+.+..              .                          
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~--G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhC--CCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            4699999999999999999853  889999998764310              0                          


Q ss_pred             ------------------------CCcchHHHHHHHHHhCCcEEEeCceeeeccCC----CCCeEEEcCCCcEEeccEEE
Q 046865          177 ------------------------IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS----EGSDTYLTSTGDTIKADCHF  228 (369)
Q Consensus       177 ------------------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~----~~~~~v~~~~g~~i~~d~vi  228 (369)
                                              ...++.+.+.+.+++.||++++++.|+++..+    ++.+.+.+.+| ++++|.||
T Consensus        83 ~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VV  161 (401)
T 2gqf_A           83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLI  161 (401)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEE
T ss_pred             HHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEE
Confidence                                    11234466777888899999999999988754    45567777766 79999999


Q ss_pred             EcCCCCCC
Q 046865          229 LCTGKPVG  236 (369)
Q Consensus       229 ~a~G~~p~  236 (369)
                      +|+|..+.
T Consensus       162 lAtG~~s~  169 (401)
T 2gqf_A          162 VATGGLSM  169 (401)
T ss_dssp             ECCCCSSC
T ss_pred             ECCCCccC
Confidence            99998873

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.54  E-value=1.6e-07  Score=88.64  Aligned_cols=102  Identities=20%  Similarity=0.174  Sum_probs=76.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--c-cC----------CcchHHHHHHHHHhCCcEEEeCceee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--E-FI----------GPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--~-~~----------~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      ++++|||+|+.|+.+|..|++..++.+|+++++.+.+.  + ..          ..++.....+.+++.|++++.++.|.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            58999999999999999999776789999999987542  1 00          01111114567788999999999999


Q ss_pred             eccCCCCCeEEE-cCCCcEEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYL-TSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~-~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .++.+++.+.+. ..+++++.+|.+|+|||.+|..+
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCCcccCCC
Confidence            887766655554 23556899999999999988653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.53  E-value=3.2e-07  Score=82.67  Aligned_cols=98  Identities=21%  Similarity=0.095  Sum_probs=76.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEc----Cccc------------cccC-----CcchHHHHHHHHHhCCcE
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK----GSRL------------LEFI-----GPKAGDKTLDWLISKKVD  195 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~----~~~~------------l~~~-----~~~~~~~~~~~l~~~gv~  195 (369)
                      .+++|||+|+.|+.+|..|++.  +.+|+++++    ...+            .+.+     ..++...+.+.+++.|++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~   86 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   86 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCE
Confidence            5799999999999999999853  889999998    2211            1111     135667777888889999


Q ss_pred             EEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          196 VKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       196 i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ++.++ +..++.+++.+.+++ +|+++++|.+|+|+|..|..+
T Consensus        87 ~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~  127 (333)
T 1vdc_A           87 IFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRL  127 (333)
T ss_dssp             EECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred             EEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence            99987 887776666667777 777899999999999887543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.53  E-value=6.1e-07  Score=82.02  Aligned_cols=96  Identities=21%  Similarity=0.186  Sum_probs=74.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCcccc--------------cc-------C-----------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLL--------------EF-------I-----------------  177 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~~l--------------~~-------~-----------------  177 (369)
                      .+++|||+|+.|+.+|..|++.  +. +|+++++.+ +.              +.       +                 
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~--g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   81 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDF--GITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN   81 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred             CcEEEECcCHHHHHHHHHHHHc--CCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence            4699999999999999999853  77 999999875 10              00       0                 


Q ss_pred             -----CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          178 -----GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       178 -----~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                           ..++...+.+.+++.|++++.++.|..++.+++...+.+.++ ++.+|.||+|+|..+.
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence                 013445567777889999999999998876655677777776 6999999999998754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.52  E-value=4e-07  Score=84.36  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=77.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-----------------------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------------------------------------  175 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-----------------------------------------  175 (369)
                      .+|+|||+|+.|+.+|..|++.  |.+|+++++.+...+                                         
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g   84 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQ--GHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDG   84 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETT
T ss_pred             CCEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCC
Confidence            4799999999999999999853  899999998643200                                         


Q ss_pred             ----cC---------------CcchHHHHHHHHHhC-CcEEEeCceeeeccCCCCCe--EEEcCCCcEEeccEEEEcCCC
Q 046865          176 ----FI---------------GPKAGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSD--TYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       176 ----~~---------------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~--~v~~~~g~~i~~d~vi~a~G~  233 (369)
                          .+               ...+.+.+.+.+++. |++++.+++|+.++.+++.+  .+++.+|+++++|.||.|+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~  164 (399)
T 2x3n_A           85 ELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGI  164 (399)
T ss_dssp             EEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCT
T ss_pred             CEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCC
Confidence                00               013456667777777 99999999999998776677  788888989999999999998


Q ss_pred             CCC
Q 046865          234 PVG  236 (369)
Q Consensus       234 ~p~  236 (369)
                      ...
T Consensus       165 ~s~  167 (399)
T 2x3n_A          165 ASY  167 (399)
T ss_dssp             TCH
T ss_pred             ChH
Confidence            754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.51  E-value=4e-07  Score=85.33  Aligned_cols=101  Identities=21%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---ccCC----------cchHHHHHHHHHhCCcEEEeCcee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFIG----------PKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~~~~----------~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      ..+++|||+|+.|+.+|..|++.....+|+++++.+.+.   +.+.          .++.....+.+++.||+++.++.|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            468999999999999999998643334899999875421   0000          111112246677899999999999


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.++.  .+++.+|+++++|.+|+|||.+|..+
T Consensus        84 ~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~p~~~  117 (431)
T 1q1r_A           84 TAINRDRQ--QVILSDGRALDYDRLVLATGGRPRPL  117 (431)
T ss_dssp             EEEETTTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEEECCCC--EEEECCCCEEECCEEEEcCCCCccCC
Confidence            88875443  57777888999999999999988654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.50  E-value=1.4e-07  Score=86.80  Aligned_cols=35  Identities=34%  Similarity=0.442  Sum_probs=31.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~   47 (369)
                      .+||+|||||++|+++|..|+ .|.+|+|||+++..
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~   46 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL   46 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            589999999999999999997 59999999998754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.50  E-value=7.4e-07  Score=82.91  Aligned_cols=99  Identities=22%  Similarity=0.335  Sum_probs=74.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchH-------------HHHHHHHHhCCcEEEeCceee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG-------------DKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~-------------~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      ++++|||+|+.|+.+|..|++.....+|+++++.+.+. ...+.+.             ....+.+++.+++++.++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~-y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP-YDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS-BCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC-cCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEE
Confidence            58999999999999999998754445699999876431 1111111             122356778899999999999


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .++.+.  ..+.+.+|+++.+|.+|+|||.+|..+
T Consensus        82 ~id~~~--~~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           82 ALDVQT--RTISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EEETTT--TEEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEECCC--CEEEECCCCEEECCEEEEccCCcccCC
Confidence            886543  367778888999999999999887543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.49  E-value=4.3e-07  Score=85.57  Aligned_cols=100  Identities=20%  Similarity=0.150  Sum_probs=74.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCC--eEEEEEcCccccc-----c--------------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLE-----F--------------------------------  176 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~--~v~lv~~~~~~l~-----~--------------------------------  176 (369)
                      ..+|+|||+|+.|+.+|..|++  .+.  +|+++++.+.+..     .                                
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~--~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~   83 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLA--EKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP   83 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHh--cCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCc
Confidence            5689999999999999999985  377  9999998753310     0                                


Q ss_pred             ---------------C--------------CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC---Cc---E
Q 046865          177 ---------------I--------------GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST---GD---T  221 (369)
Q Consensus       177 ---------------~--------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~---~  221 (369)
                                     +              ..++.+.+.+.+++.++.++++++|+.++.+++...|++.+   |+   +
T Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~  163 (447)
T 2gv8_A           84 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISK  163 (447)
T ss_dssp             CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEE
T ss_pred             hhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEE
Confidence                           0              01344556666666678899999999987666556666654   66   7


Q ss_pred             EeccEEEEcCCC--CCCc
Q 046865          222 IKADCHFLCTGK--PVGS  237 (369)
Q Consensus       222 i~~d~vi~a~G~--~p~~  237 (369)
                      +.+|.||+|+|.  .|+.
T Consensus       164 ~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          164 DIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEESEEEECCCSSSSBCB
T ss_pred             EEeCEEEECCCCCCCCCC
Confidence            999999999998  5554

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.49  E-value=3.4e-07  Score=88.39  Aligned_cols=57  Identities=21%  Similarity=0.275  Sum_probs=45.8

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ..+.+.+.+.+++.|++++.+ +|+.++.+++.  ..+++.+|+++.+|.||.|+|....
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            367788888888899999999 78888754433  4677788888999999999998643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.48  E-value=3.9e-07  Score=85.92  Aligned_cols=101  Identities=16%  Similarity=0.208  Sum_probs=72.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------ccC------CcchHHHHHHHH-HhCCcEEEeCcee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EFI------GPKAGDKTLDWL-ISKKVDVKLGQRV  202 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------~~~------~~~~~~~~~~~l-~~~gv~i~~~~~v  202 (369)
                      ..+++|||+|+.|+.+|..|++..++.+|+++++.+.+.      +.+      ..++.....+.+ ++.|+++++++.+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            368999999999999999998766688999999987431      110      112222222334 6789999999999


Q ss_pred             eeccCCCCCeEEEcCCC-cEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLTSTG-DTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g-~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.+  ...+.+.++ .++.+|.+|+|||.+|..+
T Consensus        83 ~~i~~~--~~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDTG--YVRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECSS--EEEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEecC--CCEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            888643  356677777 4899999999999887643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.47  E-value=2.3e-06  Score=83.12  Aligned_cols=57  Identities=21%  Similarity=0.215  Sum_probs=43.3

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCe-EEEc--CCCc--EEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSD-TYLT--STGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~--~~g~--~i~~d~vi~a~G~~p  235 (369)
                      ..+...+.+.+++.||+|+++++|.++..++ +.+ .+..  .+|+  ++.+|.||+|+|..+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            3677888888999999999999999986554 432 2333  3664  689999999999654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.46  E-value=3.3e-07  Score=88.43  Aligned_cols=99  Identities=17%  Similarity=0.167  Sum_probs=77.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc--------c-------------C----------------Cc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--------F-------------I----------------GP  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~--------~-------------~----------------~~  179 (369)
                      .+++|||+|+.|+.+|..|.+  .+.+|+++++.+.+..        .             +                .+
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~   99 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRS--QGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQP   99 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHH
T ss_pred             CCEEEECchHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHH
Confidence            579999999999999999985  5889999999653310        0             0                13


Q ss_pred             chHHHHHHHHHhCCc--EEEeCceeeeccCCCC--CeEEEcCCCcEEeccEEEEcCC--CCCCc
Q 046865          180 KAGDKTLDWLISKKV--DVKLGQRVNLDSVSEG--SDTYLTSTGDTIKADCHFLCTG--KPVGS  237 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vi~a~G--~~p~~  237 (369)
                      ++.+.+.+.+++.++  +++++++|+.++.+++  ...|++.+|+++.+|.||+|+|  .+|..
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            566777888888888  8999999998875544  5678888998999999999999  45543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.46  E-value=6.1e-07  Score=86.34  Aligned_cols=99  Identities=13%  Similarity=0.088  Sum_probs=77.6

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc--------c-------------C----------------Cc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--------F-------------I----------------GP  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~--------~-------------~----------------~~  179 (369)
                      .+++|||+|+.|+.+|..|+++ .|.+|+++++.+.+..        .             +                .+
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~-~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHE-LGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHc-CCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            4799999999999999999822 4889999999753310        0             0                12


Q ss_pred             chHHHHHHHHHhCCc--EEEeCceeeeccCCCC--CeEEEcCCCcEEeccEEEEcCCC--CCC
Q 046865          180 KAGDKTLDWLISKKV--DVKLGQRVNLDSVSEG--SDTYLTSTGDTIKADCHFLCTGK--PVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vi~a~G~--~p~  236 (369)
                      ++.+.+.+.+++.|+  +++++++|..++.+++  ...|++.+|+++.+|.||+|+|.  +|.
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~  150 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN  150 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC
Confidence            566777888888898  8999999998876544  56788889989999999999994  444

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.46  E-value=4.1e-07  Score=84.28  Aligned_cols=36  Identities=19%  Similarity=0.327  Sum_probs=32.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~   47 (369)
                      .++||+|||||++|+++|..|+ .|.+|+|||+++..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4689999999999999999997 59999999998653

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.46  E-value=1.9e-07  Score=89.14  Aligned_cols=39  Identities=28%  Similarity=0.468  Sum_probs=34.1

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ....+||+|||||++|+++|..|+ .|.+|+|||+++.++
T Consensus        89 ~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g  128 (497)
T 2bry_A           89 ACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS  128 (497)
T ss_dssp             TTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCC
T ss_pred             ccCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccC
Confidence            345789999999999999999987 599999999987654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.45  E-value=6.8e-07  Score=79.70  Aligned_cols=97  Identities=20%  Similarity=0.169  Sum_probs=73.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEE-EEcCccc------------cccCC-----cchHHHHHHHHHhCCcEEE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTL-VHKGSRL------------LEFIG-----PKAGDKTLDWLISKKVDVK  197 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~l-v~~~~~~------------l~~~~-----~~~~~~~~~~l~~~gv~i~  197 (369)
                      ..+++|||+|+.|+.+|..|++.  +.+|++ +++. .+            .+.++     .++...+.+.+++.+++++
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRG--GLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHE   80 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH--TCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEE
Confidence            35799999999999999999864  889999 8873 21            12222     3677788888889999999


Q ss_pred             eCceeeeccCCC--CCeEE-EcCCCcEEeccEEEEcCCCCCCch
Q 046865          198 LGQRVNLDSVSE--GSDTY-LTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       198 ~~~~v~~i~~~~--~~~~v-~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .+ .+..+ .++  +...+ ...++ ++.+|.+|+|+|.+|+.+
T Consensus        81 ~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           81 MV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             CC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             EE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence            98 77777 444  45553 33344 899999999999977654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.45  E-value=4.8e-07  Score=85.58  Aligned_cols=102  Identities=16%  Similarity=0.110  Sum_probs=74.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhC-CCCe---EEEEEcCccccc-------------------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDF-PEKK---VTLVHKGSRLLE-------------------------------------  175 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~-~~~~---v~lv~~~~~~l~-------------------------------------  175 (369)
                      ++++|||+|+.|+.+|..|++.. .+.+   |+++++.+.+..                                     
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            58999999999999999998511 3777   999998764310                                     


Q ss_pred             cC---------------CcchHHHHHHHHHhCCcE--EEeCceeeeccCCCC--CeEEEcCC---C--cEEeccEEEEcC
Q 046865          176 FI---------------GPKAGDKTLDWLISKKVD--VKLGQRVNLDSVSEG--SDTYLTST---G--DTIKADCHFLCT  231 (369)
Q Consensus       176 ~~---------------~~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~--~~~v~~~~---g--~~i~~d~vi~a~  231 (369)
                      .+               ..++.+.+.+.+++.|++  +++++.|..++.+++  ...|++.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            00               023455667777777998  999999998875544  44555543   4  578999999999


Q ss_pred             C--CCCCch
Q 046865          232 G--KPVGSD  238 (369)
Q Consensus       232 G--~~p~~~  238 (369)
                      |  ..|+.+
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  666543

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.44  E-value=1.5e-06  Score=84.35  Aligned_cols=57  Identities=9%  Similarity=-0.122  Sum_probs=43.2

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcC---CCc--EEeccEEEEcCCCC
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTS---TGD--TIKADCHFLCTGKP  234 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~i~~d~vi~a~G~~  234 (369)
                      +..+...+.+.+++.|++++++++|+.+..+++.+ .+++.   +|+  ++.+|.||+|+|..
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w  249 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW  249 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence            34677777888889999999999999987665532 34432   343  79999999999975

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.44  E-value=5.7e-07  Score=87.73  Aligned_cols=104  Identities=18%  Similarity=0.158  Sum_probs=79.7

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc----------cc-C-C--cchHHHHHHHHHhCCcEEEeCc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----------EF-I-G--PKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l----------~~-~-~--~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      ..++++|||+|+.|+.+|..|++..++.+|+++++.+.+.          .. . +  ..+...+....++.++++++++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            4578999999999999999999776789999999987631          11 1 1  1234455666678899999999


Q ss_pred             eeeeccCCCCCeEEEc-CCCc--EEeccEEEEcCCCCCCch
Q 046865          201 RVNLDSVSEGSDTYLT-STGD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p~~~  238 (369)
                      .|..++.+++.+.+.. .+|+  ++.+|.+|+|||.+|..+
T Consensus       115 ~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (588)
T 3ics_A          115 EVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVP  155 (588)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence            9999887666555543 4565  789999999999887643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.42  E-value=9.2e-07  Score=79.84  Aligned_cols=99  Identities=22%  Similarity=0.287  Sum_probs=75.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc---cc--------cccC-----CcchHHHHHHHHHhCCcEEEeC
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS---RL--------LEFI-----GPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~---~~--------l~~~-----~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      ..+++|||+|+.|+.+|..|++  .+.+|+++++..   .+        .+.+     .+++.+.+.+.+++.|++++.+
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~   91 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAAR--AQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRME   91 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHH--TTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECC
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEe
Confidence            4579999999999999999985  388999998641   11        1112     1356677778888899999998


Q ss_pred             ceeeeccCCCCCeEE-EcCCCcEEeccEEEEcCCCCCCch
Q 046865          200 QRVNLDSVSEGSDTY-LTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       200 ~~v~~i~~~~~~~~v-~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      + +..++. ++...+ .+.+|+++.+|.+|+|+|..|..+
T Consensus        92 ~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~  129 (335)
T 2a87_A           92 D-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAARYL  129 (335)
T ss_dssp             C-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             e-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCccCC
Confidence            7 777765 445567 777888999999999999877543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.41  E-value=5.9e-07  Score=83.42  Aligned_cols=98  Identities=15%  Similarity=0.181  Sum_probs=73.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------c-----c--CCcchHHHHHHHHHhCCcEEEeCceee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------E-----F--IGPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------~-----~--~~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      ++++|||+|+.|+.+|..|++.....+|+++++.+.+.      +     .  ...++.....+.+.+.+++++. +++.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            68999999999999999998753344999999876321      1     0  1122333345677889999999 8888


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      .++.++  ..+.+.+|+++.+|.+|+|||.+|..
T Consensus        81 ~id~~~--~~v~~~~g~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           81 SIDREG--RKLLLASGTAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEETTT--TEEEESSSCEEECSEEEECCCEEECC
T ss_pred             EEECCC--CEEEECCCCEEECCEEEEeeCCCccC
Confidence            886543  35777888899999999999987654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.41  E-value=1e-06  Score=84.62  Aligned_cols=100  Identities=25%  Similarity=0.233  Sum_probs=77.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc--ccc--------c----cCCcchHHHHHHHHHhCCcEEEeCce
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL--------E----FIGPKAGDKTLDWLISKKVDVKLGQR  201 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~--~~l--------~----~~~~~~~~~~~~~l~~~gv~i~~~~~  201 (369)
                      ..+++|||||+.|+.+|..+++  .+.+|+++++..  ...        .    ...+++...+.+.+++.|++++.+++
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~--~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~  289 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSAR--KGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQS  289 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred             cccEEEECCcHHHHHHHHHHHh--CCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCE
Confidence            4579999999999999999985  388999997631  111        0    01235677788888899999999999


Q ss_pred             eeeccCC---CCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          202 VNLDSVS---EGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       202 v~~i~~~---~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      |..+..+   ++...+.+.+|+++.+|.+|+|+|.+|..
T Consensus       290 v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          290 ASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            9888543   23567888888899999999999987653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.41  E-value=8.4e-07  Score=79.40  Aligned_cols=98  Identities=15%  Similarity=0.178  Sum_probs=74.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc-----------ccccC-----CcchHHHHHHHHHhCCcEEEeCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-----------LLEFI-----GPKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~-----------~l~~~-----~~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      .+++|||+|+.|+.+|..|++  .+.+|+++++...           ..+.+     .+++.+.+.+.+++.+++++.++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence            579999999999999999985  4889999986420           01112     13566777788888999999986


Q ss_pred             eeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          201 RVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                       +..++.+++.+.+ +.+++++.+|.+|+|+|.+|..+
T Consensus        84 -v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~~  119 (320)
T 1trb_A           84 -INKVDLQNRPFRL-NGDNGEYTCDALIIATGASARYL  119 (320)
T ss_dssp             -EEEEECSSSSEEE-EESSCEEEEEEEEECCCEEECCC
T ss_pred             -eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCcCCC
Confidence             7777665556666 56778899999999999876543

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.41  E-value=1.4e-06  Score=77.55  Aligned_cols=99  Identities=16%  Similarity=0.171  Sum_probs=68.9

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc---cc---ccC-------CcchHHHHHHHHHhCC-cEEEeCceee
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---LL---EFI-------GPKAGDKTLDWLISKK-VDVKLGQRVN  203 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~---~l---~~~-------~~~~~~~~~~~l~~~g-v~i~~~~~v~  203 (369)
                      .++|||+|+.|+..|..+++  .+.+|+++++...   +.   +.+       ++++.+...+.+.+.+ +.++..+.+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGR--ARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVM   85 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEE
Confidence            68999999999999988874  4899999997632   10   111       1244555555555554 5565554444


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ....+++...+.+.+|+++++|.+|+|||.+|..+
T Consensus        86 ~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p  120 (304)
T 4fk1_A           86 ITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFP  120 (304)
T ss_dssp             EEECTTSCEEEEETTCCEEEEEEEEECCCCEEECC
T ss_pred             eeecCCCcEEEEECCCCEEEeCEEEEccCCccccc
Confidence            33334456778889999999999999999887543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.41  E-value=3.7e-07  Score=83.63  Aligned_cols=98  Identities=23%  Similarity=0.404  Sum_probs=71.9

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-----------cCC-cchHHHHHHHHHhCCcEEEeCcee
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------FIG-PKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-----------~~~-~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      ...+++|||+|+.|+.+|..+++  .+ +|+++++.+....           ..+ .++.....+.+++.||+++.++.+
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~--~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v   83 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQ--TY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEA   83 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTT--TS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhh--cC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEE
Confidence            46789999999999999999974  36 9999998764210           011 122223456677889999999988


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.+.  ..++ .+|+++++|.+|+|||.+|..+
T Consensus        84 ~~id~~~--~~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           84 KLIDRGR--KVVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EEEETTT--TEEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EEEECCC--CEEE-ECCcEEECCEEEECCCCCCCCC
Confidence            8776543  3455 6778899999999999987643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.40  E-value=7.2e-07  Score=84.61  Aligned_cols=103  Identities=19%  Similarity=0.239  Sum_probs=66.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc------cccC-------Ccch-------HHHHHHHHHhCCcE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL------LEFI-------GPKA-------GDKTLDWLISKKVD  195 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~------l~~~-------~~~~-------~~~~~~~l~~~gv~  195 (369)
                      .++++|||+|+.|+.+|..|++..++.+|+++++.+.+      ++..       ..++       ........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999977678999999998763      1110       1111       22222233357999


Q ss_pred             EEeCceeeeccCCCCCeEEEc-CCCc--EEeccEEEEcCCCCCCch
Q 046865          196 VKLGQRVNLDSVSEGSDTYLT-STGD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       196 i~~~~~v~~i~~~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p~~~  238 (369)
                      ++.+++|..++.+++.+.+.. .+|+  ++.+|.+|+|||.+|..+
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            999999999877666555543 3465  799999999999887543

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.40  E-value=8.3e-07  Score=85.07  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++.|++++.+ +|+.++.+++.  ..+++.+|+++++|.||.|+|...
T Consensus       174 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          174 EVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            66778888888899999999 89888764433  567788888899999999999854

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.40  E-value=9.7e-07  Score=79.05  Aligned_cols=98  Identities=19%  Similarity=0.119  Sum_probs=73.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc---c--------cccC----CcchHHHHHHHHHhCCcEEEeCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI----GPKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~---~--------l~~~----~~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      ..+++|||+|+.|+.+|..|++.  +.+|+++++...   +        .+.+    ..++.+.+.+.+++.|++++. .
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~   92 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARS--GFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-V   92 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-C
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-e
Confidence            35799999999999999999853  889999998521   0        1111    134566777788889999988 6


Q ss_pred             eeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          201 RVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      .+..++.+++...+.+ +++++.+|.+|+|+|..|..
T Consensus        93 ~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           93 EVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             CEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             eEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCccc
Confidence            7877765555455665 56689999999999987654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.39  E-value=5e-07  Score=87.74  Aligned_cols=102  Identities=17%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------cc-----CC--c-chHHHHHHHHHhCCcEEEeCcee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EF-----IG--P-KAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------~~-----~~--~-~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      ++++|||+|+.|+.+|..|++..++.+|+++++.+.+.      +.     ..  . .+........++.|++++++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            57999999999999999998776689999999987531      10     00  1 12223344445579999999999


Q ss_pred             eeccCCCCCeEEEc-CCCc--EEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLT-STGD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.+++.+.+.. .+|+  ++.+|.+|+|||.+|..+
T Consensus        82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  120 (565)
T 3ntd_A           82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP  120 (565)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence            99887666555543 3354  789999999999987643

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.38  E-value=1.1e-06  Score=81.93  Aligned_cols=101  Identities=19%  Similarity=0.170  Sum_probs=75.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------c-c------CCcchHHHHHHHHHhCCcEEEeCcee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------E-F------IGPKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------~-~------~~~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      ..+++|||+|+.|+.+|..|++.....+|+++++.+.+.      + .      ...++.....+.+++.+++++.++.+
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   88 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV   88 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence            358999999999999999998753344599999876421      1 0      11223333456778899999999999


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..+..++  ..+.+.+|+++.+|.+|+|||.+|...
T Consensus        89 ~~id~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~~  122 (415)
T 3lxd_A           89 VSLDPAA--HTVKLGDGSAIEYGKLIWATGGDPRRL  122 (415)
T ss_dssp             EEEETTT--TEEEETTSCEEEEEEEEECCCEECCCC
T ss_pred             EEEECCC--CEEEECCCCEEEeeEEEEccCCccCCC
Confidence            9886543  467778888999999999999877543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.38  E-value=1.5e-06  Score=80.57  Aligned_cols=36  Identities=36%  Similarity=0.489  Sum_probs=31.9

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ...+||+|||||++|+++|..|+ .|.+|+|||+++.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            34679999999999999999997 4999999999864

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.38  E-value=1.1e-06  Score=87.90  Aligned_cols=49  Identities=16%  Similarity=0.124  Sum_probs=40.3

Q ss_pred             HHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          184 KTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       184 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      .+.+.+. .|++|+++++|++|+.+++.+.|++.+|+++.+|.||+|+..
T Consensus       535 ~l~~aLa-~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          535 VIIEKLA-EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             HHHHHHH-TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred             HHHHHHH-hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence            3334443 478999999999998877788899899989999999999853

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.38  E-value=9.5e-07  Score=83.16  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=74.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------c----c-C--CcchHHHHHHHHHhCCcEEEeCceee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------E----F-I--GPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------~----~-~--~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      .+++|||+|+.|+.+|..+++..++.+|+++++.+.+.      +    . .  ..++.....+.+++.||+++.++.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            36899999999999999998765689999999987431      0    0 0  11223334566778899999999998


Q ss_pred             eccCCCCCeEEEc-CCCc--EEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLT-STGD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p~~~  238 (369)
                      .+..+++.+.+.. .+|+  ++++|.+|+|||.+|..+
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  118 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL  118 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCC
Confidence            8866555555443 3465  489999999999887643

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.37  E-value=1.6e-06  Score=80.59  Aligned_cols=100  Identities=17%  Similarity=0.176  Sum_probs=73.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHH-H---------HHHhCCcEEEeCceeeec
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTL-D---------WLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~-~---------~l~~~gv~i~~~~~v~~i  205 (369)
                      ..+++|||+|+.|+.+|..|++.....+|+++++.+.+. ...+.+...+. .         .+++.|++++.+++|..+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   85 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP-YDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   85 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC-BCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc-ccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEE
Confidence            467999999999999999998764444799999886532 11111211111 0         356779999999999888


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      +.++  ..+++.+|+++++|.+|+|||.+|..+
T Consensus        86 ~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~  116 (408)
T 2gqw_A           86 DPQA--HTVALSDGRTLPYGTLVLATGAAPRAL  116 (408)
T ss_dssp             ETTT--TEEEETTSCEEECSEEEECCCEEECCC
T ss_pred             ECCC--CEEEECCCCEEECCEEEECCCCCCCCC
Confidence            6543  357777888999999999999987653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.36  E-value=1.6e-07  Score=86.60  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=32.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      +|||+||||||||+++|+.|+ .|++|+||||++.++
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~   40 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIG   40 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            599999999999999999997 599999999987654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.35  E-value=7.7e-07  Score=84.60  Aligned_cols=102  Identities=19%  Similarity=0.178  Sum_probs=74.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc------ccc------C-CcchHHHHHHHH-HhCCcEEEeCcee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL------LEF------I-GPKAGDKTLDWL-ISKKVDVKLGQRV  202 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~------l~~------~-~~~~~~~~~~~l-~~~gv~i~~~~~v  202 (369)
                      .+++|||+|+.|+.+|..|++..++.+|+++++.+.+      ++.      . ..++.....+.+ ++.|++++.++.+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5899999999999999999865568999999987643      110      0 112222234455 4459999999999


Q ss_pred             eeccCCCCCeEEEc-CCCc--EEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLT-STGD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.+++.+.+.. .+|+  ++.+|.+|+|||.+|..+
T Consensus       117 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (480)
T 3cgb_A          117 TKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMP  155 (480)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence            88876555555554 4566  799999999999887643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.35  E-value=7.3e-07  Score=84.10  Aligned_cols=101  Identities=16%  Similarity=0.091  Sum_probs=74.1

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc----------c-cC----CcchHHHHHHHHHhCCcEEEeCcee
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----------E-FI----GPKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l----------~-~~----~~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      +++|||+|+.|+.+|..+++..++.+|+++++.+.+.          . ..    ..++...+.+.+++.|++++.++.+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            6899999999999999998766689999999987421          1 10    1122223456677889999999999


Q ss_pred             eeccCCCCCeEEEc-CC--CcEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLT-ST--GDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~-~~--g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.+++.+.+.. .+  ++++++|.+|+|||.+|..+
T Consensus        82 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p  120 (452)
T 2cdu_A           82 TNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVP  120 (452)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCC
Confidence            88865555454443 12  45799999999999887643

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.34  E-value=2e-06  Score=83.05  Aligned_cols=52  Identities=10%  Similarity=0.111  Sum_probs=40.4

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC---C--cEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST---G--DTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g--~~i~~d~vi~a~G~~  234 (369)
                      .+.+.+.+.+++.   ++.+++++.++.+++.+++++.+   |  .++.+|.||.|.|..
T Consensus       139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~  195 (549)
T 2r0c_A          139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGAS  195 (549)
T ss_dssp             HHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCC
Confidence            4556677777665   89999999998777777776654   6  479999999999974

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.33  E-value=7.1e-07  Score=86.01  Aligned_cols=99  Identities=16%  Similarity=0.087  Sum_probs=75.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-------------------------c------c------CCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------------------------E------F------IGP  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-------------------------~------~------~~~  179 (369)
                      .+++|||+|+.|+.+|..|.+  .+.+|+++++.+.+.                         +      .      ..+
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~--~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~   87 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQ--AGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP   87 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred             CCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence            479999999999999999985  588999999976431                         0      0      123


Q ss_pred             chHHHHHHHHHhCCc--EEEeCceeeeccCCC--CCeEEEcCCCcEEeccEEEEcCC--CCCCc
Q 046865          180 KAGDKTLDWLISKKV--DVKLGQRVNLDSVSE--GSDTYLTSTGDTIKADCHFLCTG--KPVGS  237 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~d~vi~a~G--~~p~~  237 (369)
                      ++...+.+.+++.++  .++++++|..++.++  +...|++.+|+++.+|.||+|+|  .+|..
T Consensus        88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            566777777788787  789999999886543  34578888998999999999999  55543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.31  E-value=1.3e-06  Score=81.83  Aligned_cols=101  Identities=17%  Similarity=0.100  Sum_probs=71.4

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------c----cC--Cc--chHHHHHHHHHhCCcEEEeCceee
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------E----FI--GP--KAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------~----~~--~~--~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      +|+|||+|+.|+.+|..+++..++.+|+++++.+...      |    ..  +.  .+.....+.+++.+|+++.+++|.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            5899999999999999998765567899999876431      1    00  00  111122455677899999999999


Q ss_pred             eccCCCCCeEEEcC---CCcEEeccEEEEcCCCCCCch
Q 046865          204 LDSVSEGSDTYLTS---TGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       204 ~i~~~~~~~~v~~~---~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .+..+...+.+...   ++.++.+|.+|+|||.+|+.+
T Consensus        82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p  119 (437)
T 4eqs_A           82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL  119 (437)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCC
T ss_pred             EEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccc
Confidence            88765554444322   224689999999999988654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.29  E-value=2.7e-06  Score=75.86  Aligned_cols=99  Identities=12%  Similarity=0.058  Sum_probs=73.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc----c---c---------ccCC-----cchHHHHHHHHHhCCcE
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR----L---L---------EFIG-----PKAGDKTLDWLISKKVD  195 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~----~---l---------~~~~-----~~~~~~~~~~l~~~gv~  195 (369)
                      ..++|||+|+.|+..|..+++  .+.+|+++++...    +   +         +.++     +++...+.+.+++.+++
T Consensus         5 yDvvIIG~GpAGl~AA~~la~--~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~   82 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGR--SSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTT   82 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcE
Confidence            369999999999999998885  4899999997541    0   0         1111     35667777888889999


Q ss_pred             EEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          196 VKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       196 i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      +...+ +.......+...+.+.++.++.+|.+|+|||.+|..+
T Consensus        83 ~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~  124 (314)
T 4a5l_A           83 IITET-IDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRM  124 (314)
T ss_dssp             EECCC-EEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred             EEEeE-EEEeecCCCceEEEECCCeEEEEeEEEEccccccccc
Confidence            88765 4434444555667778888999999999999877543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.29  E-value=3.5e-06  Score=81.96  Aligned_cols=55  Identities=15%  Similarity=0.030  Sum_probs=41.9

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCC-CCCe-EEE---cCCCc--EEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVS-EGSD-TYL---TSTGD--TIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~---~~~g~--~i~~d~vi~a~G~  233 (369)
                      ..+...+.+.+++.||+|++++.|.++..+ ++.+ .+.   +.+|+  ++.++.||+|||.
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            356777888888899999999999998764 4432 233   24665  6899999999996

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.26  E-value=4.1e-06  Score=77.70  Aligned_cols=97  Identities=18%  Similarity=0.193  Sum_probs=70.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc------------cc-cccC-C------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS------------RL-LEFI-G------------------------  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~------------~~-l~~~-~------------------------  178 (369)
                      .+|+|||+|.+|+-+|..|+++.++.+|+++++..            .+ .+.. .                        
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  116 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTL  116 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCCC
Confidence            47999999999999999999766689999999753            12 0100 0                        


Q ss_pred             -------------------------------------------------------cchHHHHHHHHHhCCcEEEeCceee
Q 046865          179 -------------------------------------------------------PKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       179 -------------------------------------------------------~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                                                                             ..+...+.+.+++.|++++++++|+
T Consensus       117 ~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~  196 (405)
T 3c4n_A          117 EVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAE  196 (405)
T ss_dssp             CEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEE
T ss_pred             cEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence                                                                   1144566777888899999999999


Q ss_pred             ---------eccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          204 ---------LDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       204 ---------~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                               .+..+++.+.+.+.+| ++.+|.||+|+|..
T Consensus       197 ~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~  235 (405)
T 3c4n_A          197 LVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAA  235 (405)
T ss_dssp             EETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGG
T ss_pred             eccccccccceEeeCCeEEEEECCc-EEECCEEEECCCcc
Confidence                     8876665556666666 89999999999975

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.24  E-value=1.5e-06  Score=82.23  Aligned_cols=99  Identities=13%  Similarity=0.048  Sum_probs=73.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCC-----CeEEEEEcCcccc-------cc-----------------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPE-----KKVTLVHKGSRLL-------EF-----------------------------  176 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~-----~~v~lv~~~~~~l-------~~-----------------------------  176 (369)
                      +|+|||+|+.|+.+|..|++.  +     .+|+++++.+.+.       +.                             
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~--g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~  109 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQER--AQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHK  109 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH--HHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHhc--ccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhh
Confidence            799999999999999999865  5     8999999887321       00                             


Q ss_pred             ---------------CCcchHHHHHHHHHhCCcEEEeCceeeeccCC---CCC--eEEEcCCCc----EEeccEEEEcCC
Q 046865          177 ---------------IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS---EGS--DTYLTSTGD----TIKADCHFLCTG  232 (369)
Q Consensus       177 ---------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~---~~~--~~v~~~~g~----~i~~d~vi~a~G  232 (369)
                                     ...++.+.+....++.+++++++++|..++.+   ++.  +.+++.+|+    ++.+|.||+|||
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG  189 (463)
T 3s5w_A          110 HDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG  189 (463)
T ss_dssp             TTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCC
T ss_pred             cCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCC
Confidence                           01233345555566678999999999988754   221  366666665    899999999999


Q ss_pred             CCCCch
Q 046865          233 KPVGSD  238 (369)
Q Consensus       233 ~~p~~~  238 (369)
                      ..|..+
T Consensus       190 ~~p~~p  195 (463)
T 3s5w_A          190 GTPRIP  195 (463)
T ss_dssp             CEECCC
T ss_pred             CCCCCc
Confidence            877643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.24  E-value=5.3e-06  Score=76.58  Aligned_cols=98  Identities=11%  Similarity=0.045  Sum_probs=74.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc------------------cc-----------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL------------------LE-----------------------  175 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~------------------l~-----------------------  175 (369)
                      .+|+|||+|+.|+.+|..|++.  |.+|+++++.+..                  +.                       
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   80 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA   80 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred             ccEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEEC
Confidence            3699999999999999999864  8999999987531                  00                       


Q ss_pred             -------------c------CCcchHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeEEEc-CCCc--EEeccEEEEcCC
Q 046865          176 -------------F------IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDTYLT-STGD--TIKADCHFLCTG  232 (369)
Q Consensus       176 -------------~------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~v~~-~~g~--~i~~d~vi~a~G  232 (369)
                                   .      ..+.+.+.+.+.+.+.|++++.+++|+.++.++ +.+.+++ .+|+  ++++|.||.|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG  160 (394)
T 1k0i_A           81 GQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDG  160 (394)
T ss_dssp             TEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCC
T ss_pred             CceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCC
Confidence                         0      002344556677777899999999999987653 4567776 6786  799999999999


Q ss_pred             CCCC
Q 046865          233 KPVG  236 (369)
Q Consensus       233 ~~p~  236 (369)
                      ....
T Consensus       161 ~~S~  164 (394)
T 1k0i_A          161 FHGI  164 (394)
T ss_dssp             TTCS
T ss_pred             CCcH
Confidence            8654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.22  E-value=1.8e-06  Score=82.33  Aligned_cols=100  Identities=21%  Similarity=0.272  Sum_probs=71.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---ccCCcch--------HHH--------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFIGPKA--------GDK--------------------  184 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---~~~~~~~--------~~~--------------------  184 (369)
                      ..+++|||+|+.|+.+|..|++..++.+|+++++.+.+.   +.+...+        ...                    
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   90 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHh
Confidence            357999999999999999988766789999999886431   0000000        000                    


Q ss_pred             H---HH--HHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          185 T---LD--WLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       185 ~---~~--~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      +   .+  .+.+.||+++.++.|..++.++  ..|++.+|+++.+|.+|+|||.+|..
T Consensus        91 ~~~~~~l~~~~~~gv~~~~g~~v~~id~~~--~~V~~~~g~~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           91 YVSAQDLPHIENGGVAVLTGKKVVQLDVRD--NMVKLNDGSQITYEKCLIATGGTPRS  146 (493)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGG--TEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             hcchhhhhhhhcCCeEEEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCCCCCC
Confidence            0   00  0124689999999998876543  35777889899999999999998764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.20  E-value=2.3e-06  Score=79.27  Aligned_cols=33  Identities=27%  Similarity=0.502  Sum_probs=30.2

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .+|+|||||++||++|..|+ .|++|+|+||.+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            68999999999999999997 5999999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.20  E-value=7.8e-06  Score=72.86  Aligned_cols=97  Identities=18%  Similarity=0.270  Sum_probs=70.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc---cc--------ccC----CcchHHHHHHHHHhCCcEEEeCcee
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---LL--------EFI----GPKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~---~l--------~~~----~~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      .++|||+|+.|+.+|..+++  .+.+|+++++...   ++        |.+    .+++.....+...+.+..+..+..+
T Consensus         8 DvvIIG~GpAGl~aA~~l~~--~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASR--ANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIK   85 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeee
Confidence            58999999999999999885  4899999997531   11        111    1355666677777888888877666


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      .....  ........+++++++|.+|+|||.+|...
T Consensus        86 ~~~~~--~~~~~~~~~~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A           86 SVEDK--GEYKVINFGNKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             EEEEC--SSCEEEECSSCEEEEEEEEECCCEEECCC
T ss_pred             eeeee--ecceeeccCCeEEEeceeEEcccCccCcC
Confidence            54432  22344556778999999999999887543

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.18  E-value=1e-05  Score=78.57  Aligned_cols=97  Identities=20%  Similarity=0.124  Sum_probs=72.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc-cc-----------------------cc----------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LL-----------------------EF----------------  176 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~-~l-----------------------~~----------------  176 (369)
                      -.|+|||||+.|+++|..+++  .|.+|.++++.+. +.                       ..                
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l  106 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAAR--MGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL  106 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred             CCEEEECChHHHHHHHHHHHh--CCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence            479999999999999999985  4899999998631 10                       00                


Q ss_pred             --------------CC-cchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCCCC
Q 046865          177 --------------IG-PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       177 --------------~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                                    .+ ..+...+.+.+++ .|++++ ++.|..+..+++.+ .|.+.+|.++.+|.||+|+|..+.
T Consensus       107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                          00 1245666777877 699995 56888886555543 577788888999999999998653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.16  E-value=1.2e-05  Score=76.63  Aligned_cols=100  Identities=24%  Similarity=0.253  Sum_probs=71.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCC-CCeEEEEEcCcccc---------------------------c--cCC-------c
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLL---------------------------E--FIG-------P  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~-~~~v~lv~~~~~~l---------------------------~--~~~-------~  179 (369)
                      .+++|||+|+.|+.+|..+++..+ +.+|+++++.+ +.                           .  .++       .
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            369999999999999999987655 88999999885 10                           0  000       0


Q ss_pred             c--------------hHHHHHHHHHhCCcEEEeCceeeeccCC----CCCeEEEcCCCc--EEeccEEEEcCCCCCCch
Q 046865          180 K--------------AGDKTLDWLISKKVDVKLGQRVNLDSVS----EGSDTYLTSTGD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       180 ~--------------~~~~~~~~l~~~gv~i~~~~~v~~i~~~----~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~  238 (369)
                      +              +...+.+.+++.||+++.++ +..+...    ++.+.+.+.+|+  ++.+|.+|+|||.+|..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p  159 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL  159 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            1              12224566788899999996 5555431    145567777776  799999999999987643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.15  E-value=3.2e-06  Score=80.58  Aligned_cols=100  Identities=14%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-----c-----cCC-cchHHHHHHHH--HhCCcEEEeCcee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----E-----FIG-PKAGDKTLDWL--ISKKVDVKLGQRV  202 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-----~-----~~~-~~~~~~~~~~l--~~~gv~i~~~~~v  202 (369)
                      ..+|||||+|+.|+.+|..|..  .+.+|+||++.+.++     +     ..+ .++...+.+.+  ++.+++++.+ .+
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~--~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v  118 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDT--KKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EA  118 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCT--TTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EE
T ss_pred             CCCEEEECCcHHHHHHHHHhhh--CCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EE
Confidence            3589999999999999999873  478999999987531     1     111 12223344443  3347888776 56


Q ss_pred             eeccCCCCCeEEE------------------cCCCcEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYL------------------TSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~------------------~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      +.|+.+...+.+.                  ..++.++++|.+|+|||.+|+..
T Consensus       119 ~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          119 TSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             EEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            6666554444332                  23466899999999999988754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.14  E-value=9.9e-06  Score=74.90  Aligned_cols=99  Identities=15%  Similarity=0.185  Sum_probs=71.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------C-Ccc---------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------I-GPK---------------------------  180 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~-~~~---------------------------  180 (369)
                      ..+|+|||+|+.|+.+|..|++  .|.+|+++++.+.....       . +..                           
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~  103 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIAD  103 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT--TTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEEC
Confidence            4689999999999999999984  48999999987532110       0 000                           


Q ss_pred             ----------------------hHHHHHHHHHhC--CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          181 ----------------------AGDKTLDWLISK--KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       181 ----------------------~~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                                            -...+.+.|.+.  +++++++++|+.++.+++.+.+++.+|+++++|.||.|.|....
T Consensus       104 ~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          104 EKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             SSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             CCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence                                  011222333221  36789999999988776778888889989999999999998643

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.12  E-value=2.3e-05  Score=70.26  Aligned_cols=165  Identities=17%  Similarity=0.083  Sum_probs=99.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------------cC-----------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------FI-----------  177 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------------------~~-----------  177 (369)
                      .-.++|||+|+.|+.+|..|+++.++.+|+++++.+.+..                           .+           
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            4579999999999999999986546899999998753310                           00           


Q ss_pred             CcchHHHHHHHHHh-CCcEEEeCceeeeccCCC-----------------C--Ce-EEEc------C--------CCcEE
Q 046865          178 GPKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSE-----------------G--SD-TYLT------S--------TGDTI  222 (369)
Q Consensus       178 ~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~-----------------~--~~-~v~~------~--------~g~~i  222 (369)
                      ..++.+.+.+.+++ .|++++.++.+.++..++                 +  .+ .+..      .        +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            11233556666766 599999999988775433                 1  11 1111      1        22479


Q ss_pred             eccEEEEcCCCCCCc-h----hhcccccCCCCCCCCcEE--------eCCceeeccCCCeEEecccCCc----c--ccch
Q 046865          223 KADCHFLCTGKPVGS-D----WLKDTILKDSLDTDGMLM--------VDENLRVKGQKNIFAIGDITDI----R--EIKQ  283 (369)
Q Consensus       223 ~~d~vi~a~G~~p~~-~----~l~~~~~~~~~~~~g~i~--------vd~~l~~~~~~~i~a~GD~~~~----~--~~~~  283 (369)
                      .++.||.|||..... .    .+...++...+...+.+.        |+..-+.  +|++|++|=.+.-    +  .|.+
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v--~~gl~~~gm~~~~~~g~~rmgp~f  316 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREI--VPGLIVGGMELSEIDGANRMGPTF  316 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEE--ETTEEECGGGHHHHHTCEECCSCC
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceE--cCCEEEechhhHhhcCCCCCCccc
Confidence            999999999976431 1    122222110011111111        2222333  7999999976431    1  1112


Q ss_pred             hHHHHHHHHHHHHHHHHHhh
Q 046865          284 GFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       284 ~~~A~~~g~~~a~~i~~~~~  303 (369)
                      + .-...|+.+|+-|+..++
T Consensus       317 g-~m~~sg~~~a~~~~~~~~  335 (344)
T 3jsk_A          317 G-AMALSGVKAAHEAIRVFD  335 (344)
T ss_dssp             H-HHHHHHHHHHHHHHHHHH
T ss_pred             c-eeeecCHHHHHHHHHHHH
Confidence            2 234678889998887764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.12  E-value=2.2e-06  Score=80.91  Aligned_cols=92  Identities=14%  Similarity=0.034  Sum_probs=69.7

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--------ccC--CcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------EFI--GPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--------~~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      .+.+++|||+|+.|+.+|..|.+..++.+|+++++.+.+.        |.+  ..++...+.+.+++.||+++.++.+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~   84 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR   84 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEee
Confidence            4678999999999999999998764448999999987654        222  235667778888899999999977631


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                            .  +.+.+. ++.+|.+|+|||..|
T Consensus        85 ------~--V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           85 ------D--VTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T--BCHHHH-HHHSSEEEECCCCCE
T ss_pred             ------E--EEeccc-eEEcCEEEEecCcCC
Confidence                  1  333332 478999999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.11  E-value=2.2e-06  Score=80.69  Aligned_cols=88  Identities=17%  Similarity=0.180  Sum_probs=68.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc-------ccc--CCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-------LEF--IGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~-------l~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .++++|||+|+.|+.+|..|++.  +.+|+++++.+.+       +|.  ++.++.....+.+++.||++++++.+..  
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~--G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--  197 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAK--GYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR--  197 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT--
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc--
Confidence            56899999999999999999864  8899999998765       232  3456777778889999999999987631  


Q ss_pred             CCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          207 VSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       207 ~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                            .+.++++ .+++|.||+|||..
T Consensus       198 ------~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          198 ------DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             ------TBCHHHH-HSSCSEEEECCCCC
T ss_pred             ------EEEhhHh-HhhCCEEEEecCCC
Confidence                  1222222 35799999999986

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.11  E-value=2.2e-06  Score=80.82  Aligned_cols=56  Identities=11%  Similarity=-0.193  Sum_probs=46.2

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCC--CCCe-EEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSD-TYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ..+.+.+.+.+++.|++++++++|+++..+  ++.+ .|.+ +|+++.+|.||+|+|..|
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~  300 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFP  300 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccc
Confidence            478889999999999999999999998765  4443 4554 578899999999999865

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.11  E-value=1.1e-05  Score=77.85  Aligned_cols=95  Identities=17%  Similarity=0.170  Sum_probs=71.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc--------c-------------cCC----------------c
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------E-------------FIG----------------P  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l--------~-------------~~~----------------~  179 (369)
                      .+++|||+|+.|+.+|..|++.  +.+|+++++.+.+.        |             .+.                +
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~--G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~   94 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLREL--GRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   94 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCEEEECccHHHHHHHHHHHhC--CCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHH
Confidence            4799999999999999999864  88999999875431        1             001                1


Q ss_pred             chHHHHHHHHHhCC--cEEEeCceeeeccCCCC--CeEEEcCCCcEEeccEEEEcCCC
Q 046865          180 KAGDKTLDWLISKK--VDVKLGQRVNLDSVSEG--SDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~~g--v~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ++.+.+....++.+  ++++++++|..++.+++  ...|++.+|+++++|.||+|+|.
T Consensus        95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A           95 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence            24455555556655  67999999998875433  46778888989999999999995

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.10  E-value=1.8e-05  Score=76.73  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=72.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc-cc-----------------------cc---------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LL-----------------------EF---------------  176 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~-~l-----------------------~~---------------  176 (369)
                      .-+|+|||||+.|+++|..+++  .|.+|.++++.+. +.                       ..               
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~   98 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVAR--GGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRM   98 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHH--CCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhh
Confidence            4589999999999999999985  4899999998631 10                       00               


Q ss_pred             ---------------CC-cchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCCCC
Q 046865          177 ---------------IG-PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       177 ---------------~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                                     .+ ..+...+.+.+++ .|++++.+ .|..+..+++.+. |.+.+|+++.+|.||+|||..++
T Consensus        99 l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A           99 LNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             ECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             cccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                           00 0345566777777 49999654 7777765555544 77788889999999999998754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.10  E-value=7e-06  Score=77.74  Aligned_cols=98  Identities=24%  Similarity=0.174  Sum_probs=70.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------------------------------------CC
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------------------------------------IG  178 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------------------------------------~~  178 (369)
                      ..+++|||+|+.|+.+|..+++.  +.+|+++++.+.+...                                     .+
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEID   83 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence            35799999999999999999864  8899999998643100                                     00


Q ss_pred             c-c-----------hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCch
Q 046865          179 P-K-----------AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       179 ~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~  238 (369)
                      . .           +...+.+.+++.||+++.++.+. +  +.+.+.+.+.+|  +++++|.+|+|||.+|..+
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p  154 (470)
T 1dxl_A           84 LAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-V--SPSEISVDTIEGENTVVKGKHIIIATGSDVKSL  154 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-E--ETTEEEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cCCEEEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence            0 0           11223456677899999998654 3  334566666677  6899999999999987643

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.09  E-value=2.1e-05  Score=76.10  Aligned_cols=98  Identities=16%  Similarity=0.136  Sum_probs=72.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc-cc-----------------------cc----------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LL-----------------------EF----------------  176 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~-~l-----------------------~~----------------  176 (369)
                      -.|+|||||+.|+++|..+++  .|.+|.++++.+. +.                       ..                
T Consensus        28 yDVIVIGgG~AGl~AAlalAr--~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l  105 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAAR--MGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKML  105 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeec
Confidence            579999999999999999985  4899999998631 10                       00                


Q ss_pred             -------C-------C-cchHHHHHHHHHh-CCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          177 -------I-------G-PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       177 -------~-------~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                             .       + ..+...+.+.+++ .|++++ ++.|+.+..+++.+ .|.+.+|.++.+|.||+|||..++.
T Consensus       106 ~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          106 NTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             ccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence                   0       0 1245666777777 599995 56888876555544 5778888899999999999986543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.09  E-value=7.1e-06  Score=77.64  Aligned_cols=97  Identities=19%  Similarity=0.155  Sum_probs=69.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc------------------------------c--------CC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------------------------------F--------IG  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~------------------------------~--------~~  178 (369)
                      .+++|||+|+.|+.+|..+++.  +.+|+++++.+.+..                              .        .+
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   80 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQL--GMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMD   80 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            4699999999999999999853  899999999864310                              0        00


Q ss_pred             c-c-----------hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCch
Q 046865          179 P-K-----------AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       179 ~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~  238 (369)
                      . +           +...+.+.+++.||+++.++.+. +  +.+.+.+.+.+|  +++.+|.+|+|||.+|..+
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~-i--~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p  151 (468)
T 2qae_A           81 SAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF-E--TAHSIRVNGLDGKQEMLETKKTIIATGSEPTEL  151 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE-E--ETTEEEEEETTSCEEEEEEEEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-e--eCCEEEEEecCCceEEEEcCEEEECCCCCcCCC
Confidence            0 0           11123456677899999987553 3  334566777777  6899999999999987643

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.08  E-value=9.9e-06  Score=76.30  Aligned_cols=97  Identities=19%  Similarity=0.154  Sum_probs=72.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------cC------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------FI------------------------  177 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------~~------------------------  177 (369)
                      -+|+|||||+.|+.+|..|++  .|.+|+++++.+....               .+                        
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~--~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   84 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSR--RGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDM   84 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSS--SSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCC
Confidence            479999999999999999984  4899999998653200               00                        


Q ss_pred             -------------C-cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcC---CCc--EEeccEEEEcCCCCC
Q 046865          178 -------------G-PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTS---TGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       178 -------------~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~---~g~--~i~~d~vi~a~G~~p  235 (369)
                                   + ..+.+.+.+.+++.|++++.+++|+.+..+++.+. +++.   +|+  ++++|.||.|+|...
T Consensus        85 ~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A           85 QTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             SCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             ceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence                         0 12456667777788999999999998876555433 4433   665  799999999999753

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.06  E-value=1.6e-06  Score=81.15  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=30.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .+++||+|||||++|+++|..|+ .|++|+|||+.+
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45689999999999999999997 599999999986

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.06  E-value=1.6e-05  Score=74.97  Aligned_cols=96  Identities=25%  Similarity=0.204  Sum_probs=69.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-----------------------------c-------CCc-
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------------------------F-------IGP-  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-----------------------------~-------~~~-  179 (369)
                      .+++|||+|+.|+.+|..+++.  +.+|+++++. .+..                             .       .+. 
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFA   80 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            4699999999999999999853  8999999987 2210                             0       000 


Q ss_pred             -----------chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC-cEEeccEEEEcCCCCCCch
Q 046865          180 -----------KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG-DTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       180 -----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~d~vi~a~G~~p~~~  238 (369)
                                 .+.+.+.+.+++.||+++.++.+. +  +.+.+.+.+.+| +++++|.+|+|||.+|..+
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-i--d~~~v~V~~~~G~~~i~~d~lViATGs~p~~~  148 (455)
T 1ebd_A           81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-V--DANTVRVVNGDSAQTYTFKNAIIATGSRPIEL  148 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-E--ETTEEEEEETTEEEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-c--cCCeEEEEeCCCcEEEEeCEEEEecCCCCCCC
Confidence                       022234566778899999998654 3  344566777777 6899999999999987643

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.05  E-value=2.6e-06  Score=81.36  Aligned_cols=40  Identities=33%  Similarity=0.420  Sum_probs=34.6

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~   50 (369)
                      ...+||+|||||++||+||+.|+ .|++|+|+|+++.+|..
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~   51 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGK   51 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence            44689999999999999999997 49999999999988754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.05  E-value=2.1e-05  Score=74.54  Aligned_cols=94  Identities=22%  Similarity=0.198  Sum_probs=68.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc----------------------------cc----------CC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----------------------------EF----------IG  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l----------------------------~~----------~~  178 (369)
                      .+++|||+|+.|+.+|..+++.  +.+|+++++.+.+.                            ..          ++
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~   83 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQL--GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKIN   83 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            4799999999999999999853  88999999854321                            00          00


Q ss_pred             c-c-----------hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cE------EeccEEEEcCCCCC
Q 046865          179 P-K-----------AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DT------IKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~------i~~d~vi~a~G~~p  235 (369)
                      . +           +...+.+.+++.||+++.++.+..   +.+.+.+.+.+|  ++      +++|.+|+|||.+|
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A           84 VANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc---cCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence            0 0           111244567788999999987652   344566777776  56      99999999999887

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.04  E-value=2e-05  Score=76.52  Aligned_cols=98  Identities=21%  Similarity=0.249  Sum_probs=72.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------------------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------------------  176 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------------------------------------  176 (369)
                      ..+|+|||+|+.|+.+|..++++  |.+|+++++.+.+...                                       
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~--G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~  203 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNI  203 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            45799999999999999999853  8999999987543110                                       


Q ss_pred             --------------------------C-----------------------CcchHHHHHHHHHhCCcEEEeCceeeeccC
Q 046865          177 --------------------------I-----------------------GPKAGDKTLDWLISKKVDVKLGQRVNLDSV  207 (369)
Q Consensus       177 --------------------------~-----------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  207 (369)
                                                +                       ...+...+.+.+++.||+|+++++|+++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~  283 (571)
T 1y0p_A          204 NDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLK  283 (571)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEE
T ss_pred             CCHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEE
Confidence                                      0                       013445667777889999999999999876


Q ss_pred             CC-CCe-EEEc--CCCc--EEeccEEEEcCCCCC
Q 046865          208 SE-GSD-TYLT--STGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       208 ~~-~~~-~v~~--~~g~--~i~~d~vi~a~G~~p  235 (369)
                      ++ +.+ .++.  .+|+  ++.+|.||+|+|...
T Consensus       284 ~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          284 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            54 432 2333  3665  689999999999743

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.03  E-value=3.7e-06  Score=76.73  Aligned_cols=43  Identities=26%  Similarity=0.473  Sum_probs=36.9

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCC-CCcccccc
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK-EYFEITWA   52 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~-~~~~~~~~   52 (369)
                      +...+||+|||||++||+||+.|+ .|++|+|+|++ +.+|..+.
T Consensus        41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~   85 (376)
T 2e1m_A           41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIK   85 (376)
T ss_dssp             CCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCC
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCcee
Confidence            345789999999999999999997 59999999999 88776543

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.03  E-value=4e-06  Score=77.17  Aligned_cols=43  Identities=26%  Similarity=0.358  Sum_probs=37.2

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~   52 (369)
                      ....+||+|||||++|+++|++|+ .|.+|+|+|+++.+|..+.
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~   69 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY   69 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGC
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccc
Confidence            345789999999999999999986 5999999999998886544

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.02  E-value=1.5e-05  Score=77.22  Aligned_cols=98  Identities=23%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------------------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------------------  176 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------------------------------------  176 (369)
                      .-+|+|||+|..|+..|..+++.  |.+|+++++.+.+...                                       
T Consensus       121 ~~DVvVVG~G~aGl~aA~~la~~--G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~  198 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ  198 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            34799999999999999999865  8899999987532100                                       


Q ss_pred             --------------------------C-----------------------CcchHHHHHHHHHhCCcEEEeCceeeeccC
Q 046865          177 --------------------------I-----------------------GPKAGDKTLDWLISKKVDVKLGQRVNLDSV  207 (369)
Q Consensus       177 --------------------------~-----------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  207 (369)
                                                +                       ...+...+.+.+++.||+|+++++|.++..
T Consensus       199 ~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~  278 (566)
T 1qo8_A          199 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVV  278 (566)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEE
T ss_pred             CCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE
Confidence                                      0                       012345667777889999999999999876


Q ss_pred             CC-CCe-EEEc--CCCc--EEeccEEEEcCCCCC
Q 046865          208 SE-GSD-TYLT--STGD--TIKADCHFLCTGKPV  235 (369)
Q Consensus       208 ~~-~~~-~v~~--~~g~--~i~~d~vi~a~G~~p  235 (369)
                      ++ +.+ .+++  .+|+  ++.+|.||+|+|...
T Consensus       279 ~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          279 NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             CCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            55 433 2333  3675  689999999999654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.00  E-value=2.6e-06  Score=80.31  Aligned_cols=90  Identities=12%  Similarity=0.000  Sum_probs=68.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHhh-hCC----CCeEEEEEcCcccc--------cc--CCcchHHHHHHHHHhCCcEEEeCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAV-DFP----EKKVTLVHKGSRLL--------EF--IGPKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~-~~~----~~~v~lv~~~~~~l--------~~--~~~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      +.+++|||+|+.|+.+|..|.+ ..+    +.+|+++++.+.+.        |.  ...++...+.+.+++.||+++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4689999999999999999986 433    78999999987543        11  223677788888888999999885


Q ss_pred             eeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          201 RVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .+   .   ..  +++.++ ++.+|.||+|||..
T Consensus        83 ~v---~---~~--v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV---G---EH--VQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB---T---TT--BCHHHH-HHHSSEEEECCCCC
T ss_pred             EE---C---CE--EEECCC-eEeCCEEEEeeCCC
Confidence            53   1   11  334444 57899999999996

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.99  E-value=2.5e-05  Score=73.98  Aligned_cols=97  Identities=20%  Similarity=0.152  Sum_probs=69.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc--------------------------------------CC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------IG  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~--------------------------------------~~  178 (369)
                      .+++|||+|+.|+.+|..+++.  +.+|+++++.+.+...                                      .+
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~   84 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQL--GFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLN   84 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccC
Confidence            4699999999999999999853  8999999998633100                                      00


Q ss_pred             c-c-----------hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC-C-cEEeccEEEEcCCCCCCch
Q 046865          179 P-K-----------AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST-G-DTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       179 ~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g-~~i~~d~vi~a~G~~p~~~  238 (369)
                      . .           +...+.+.+++.||+++.++.+. +  +.+.+.+.+.+ + +++.+|.+|+|||.+|..+
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p  155 (474)
T 1zmd_A           85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKI-T--GKNQVTATKADGGTQVIDTKNILIATGSEVTPF  155 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-E--ETTEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-e--cCCEEEEEecCCCcEEEEeCEEEECCCCCCCCC
Confidence            0 0           11123566778899999987542 3  33456677766 4 5799999999999987643

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.99  E-value=3.1e-06  Score=81.19  Aligned_cols=40  Identities=25%  Similarity=0.471  Sum_probs=35.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCCCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEYFEITW   51 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~~~~~~~   51 (369)
                      +.+||+|||||++||+||+.|+ .| .+|+|+|+++.+|+..
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCce
Confidence            3579999999999999999997 58 9999999999888654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.99  E-value=3.8e-06  Score=79.63  Aligned_cols=54  Identities=19%  Similarity=0.024  Sum_probs=45.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCC-eEEEcCCCcEEeccEEEEcCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS-DTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ..+.+.+.+.+++.|++|+++++|++++.+++. ..|.+ ++.++.+|.||+|++.
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPA  288 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCH
Confidence            368889999999999999999999999866554 66665 4558999999999875

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.99  E-value=4.9e-06  Score=77.60  Aligned_cols=54  Identities=7%  Similarity=-0.082  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .+.....+..+..+.+++++++|++|+.+++.+.|++.+| ++++|.||+|++..
T Consensus       204 g~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          204 GTQAMFEHLNATLEHPAERNVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLE  257 (424)
T ss_dssp             CHHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHH
T ss_pred             hHHHHHHHHHHhhcceEEcCCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHH
Confidence            4444445555555678899999999987777777888877 49999999999863

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.99  E-value=4.1e-05  Score=72.87  Aligned_cols=94  Identities=23%  Similarity=0.276  Sum_probs=67.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc----------------------------cCC----------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------------------------FIG----------  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~----------------------------~~~----------  178 (369)
                      .+++|||+|+.|+.+|..+++  .|.+|+++++.+.+..                            .+.          
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  103 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQ--LGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNL  103 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECH
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCH
Confidence            579999999999999999985  4899999998654311                            000          


Q ss_pred             -----------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCC
Q 046865          179 -----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 -----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p  235 (369)
                                 ..+...+...+++.+++++.++...   .+.+.+.+.+.+|  .++.+|.+|+|||.+|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~v~~~~g~~~~~~~d~lViATGs~p  170 (491)
T 3urh_A          104 QKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV---LGQGKVSVTNEKGEEQVLEAKNVVIATGSDV  170 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---CSSSEEEEECTTSCEEEEECSEEEECCCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ecCCEEEEEeCCCceEEEEeCEEEEccCCCC
Confidence                       0111234455677899999886543   2345567777777  4799999999999876

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.98  E-value=2.9e-05  Score=73.32  Aligned_cols=95  Identities=14%  Similarity=0.076  Sum_probs=68.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------cc---------------------------CCc-
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------EF---------------------------IGP-  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------~~---------------------------~~~-  179 (369)
                      .+++|||+|+.|+.+|..+++.  +.+|+++++.. +.         |.                           .+. 
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~--G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~   80 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQL--GLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYG   80 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHH
Confidence            3699999999999999999853  89999999872 11         00                           000 


Q ss_pred             -----------chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCc
Q 046865          180 -----------KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       180 -----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~  237 (369)
                                 .+...+.+.+++.||+++.++.+. +  +.+.+.+.+.+|  +++.+|.+|+|+|.+|..
T Consensus        81 ~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i--d~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~  148 (464)
T 2a8x_A           81 IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A--DANTLLVDLNDGGTESVTFDNAIIATGSSTRL  148 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S--SSSEEEEEETTSCCEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cCCeEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence                       011224566778899999988654 3  345567777777  689999999999998754

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.98  E-value=1e-05  Score=76.50  Aligned_cols=97  Identities=12%  Similarity=0.131  Sum_probs=69.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------------------------------CCc-c----
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------------------------------IGP-K----  180 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------------------------------~~~-~----  180 (369)
                      -+++|||+|+.|+.+|..+++  .+.+|+++++.+.+...                               ++. .    
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~--~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAK--AKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDR   82 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHH
Confidence            369999999999999999985  38999999976643210                               000 0    


Q ss_pred             ------hH--HHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcE--EeccEEEEcCCCCCCch
Q 046865          181 ------AG--DKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDT--IKADCHFLCTGKPVGSD  238 (369)
Q Consensus       181 ------~~--~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~--i~~d~vi~a~G~~p~~~  238 (369)
                            +.  ..+.+.+++.||+++.+ .+..++  .+.+.+.+.+|++  +.+|.+|+|||.+|..+
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id--~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           83 KDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKD--PTHVIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEE--TTEEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             HHhheeccccchHHHHHHhCCCEEEEe-EEEEec--CCeEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence                  01  33445556779999888 455553  3456777788888  99999999999887643

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.98  E-value=6.1e-06  Score=78.59  Aligned_cols=98  Identities=19%  Similarity=0.136  Sum_probs=69.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc----------cCCc---chHHHHHHHHHhCCcEEEeCcee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------FIGP---KAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~----------~~~~---~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      ..+++|||+|+.|+.+|..|++.   .+|+++++.+.+..          .++.   ++...+.+.+ +.+++++.++.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v  183 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSA  183 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEE
Confidence            35799999999999999999853   89999999875411          1111   1222333333 569999999999


Q ss_pred             eeccCCCCCeEEEc-CCCc--EEeccEEEEcCCCCCCc
Q 046865          203 NLDSVSEGSDTYLT-STGD--TIKADCHFLCTGKPVGS  237 (369)
Q Consensus       203 ~~i~~~~~~~~v~~-~~g~--~i~~d~vi~a~G~~p~~  237 (369)
                      ..+..++..+.+.. .+++  ++.+|.+|+|||..|..
T Consensus       184 ~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~  221 (493)
T 1y56_A          184 LGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDST  221 (493)
T ss_dssp             CCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECC
T ss_pred             EEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccC
Confidence            88765555444433 4453  68999999999987754

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.98  E-value=5.5e-06  Score=76.70  Aligned_cols=42  Identities=17%  Similarity=0.206  Sum_probs=36.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCCCccccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWAS   53 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~~~~~~~~~   53 (369)
                      .++||+|||||++|++||+.|+ . |.+|+|+|+++.+|.....
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~   49 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS   49 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence            3689999999999999999996 4 8999999999988865433

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.98  E-value=4.6e-06  Score=76.13  Aligned_cols=36  Identities=33%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +.+++||+|||||++|+++|++|+ +|.+|+|||++.
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            345789999999999999999996 599999999976

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.97  E-value=1.2e-05  Score=75.73  Aligned_cols=95  Identities=21%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-----------------------------------cCCc-c-
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------------------------------FIGP-K-  180 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-----------------------------------~~~~-~-  180 (369)
                      +++|||+|+.|+.+|..+++.  +.+|+++++.+.+..                                   ..+. + 
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQL--GMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPAL   80 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHH
T ss_pred             CEEEECCChhHHHHHHHHHHC--CCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHH
Confidence            689999999999999999853  899999999853310                                   0000 0 


Q ss_pred             ----------hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          181 ----------AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       181 ----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                                +...+.+.+++.||+++.++.+. +  +.+.+.+.+ +|+++.+|.+|+|||.+|..+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~-i--~~~~~~v~~-~g~~~~~d~lviAtG~~p~~~  144 (455)
T 2yqu_A           81 MAHKDKVVQANTQGVEFLFKKNGIARHQGTARF-L--SERKVLVEE-TGEELEARYILIATGSAPLIP  144 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-S--SSSEEEETT-TCCEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cCCeEEEee-CCEEEEecEEEECCCCCCCCC
Confidence                      11123456677899999987543 2  334455555 678899999999999987543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.97  E-value=1.5e-05  Score=73.92  Aligned_cols=98  Identities=19%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCe-EEEEEcCcccccc--------------------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEF--------------------------------------  176 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~-v~lv~~~~~~l~~--------------------------------------  176 (369)
                      ..+|+|||+|+.|+-+|..|++  .|.+ |+++++.+.+.+.                                      
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~   81 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ   81 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECT
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcC
Confidence            3579999999999999999985  3889 9999987542100                                      


Q ss_pred             ---------------CC--------cchHHHHHHHHHh-CC-cEEEeCceeeeccCCCCCeEEEcCC---C--cEEeccE
Q 046865          177 ---------------IG--------PKAGDKTLDWLIS-KK-VDVKLGQRVNLDSVSEGSDTYLTST---G--DTIKADC  226 (369)
Q Consensus       177 ---------------~~--------~~~~~~~~~~l~~-~g-v~i~~~~~v~~i~~~~~~~~v~~~~---g--~~i~~d~  226 (369)
                                     ..        ..+.+.+.+.+++ .| ++++.+++|+.++. ++.+.+++.+   |  +++.+|.
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           82 SGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             TSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESE
T ss_pred             CCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCE
Confidence                           00        0234456666655 35 68999999999876 5667777654   7  5799999


Q ss_pred             EEEcCCCCCC
Q 046865          227 HFLCTGKPVG  236 (369)
Q Consensus       227 vi~a~G~~p~  236 (369)
                      ||.|.|....
T Consensus       161 vV~AdG~~S~  170 (410)
T 3c96_A          161 LVGADGIHSA  170 (410)
T ss_dssp             EEECCCTTCH
T ss_pred             EEECCCccch
Confidence            9999998643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.96  E-value=1e-05  Score=74.44  Aligned_cols=100  Identities=14%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc------ccc-C--CcchHH----HHHHHHHhCCcEEEeCcee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL------LEF-I--GPKAGD----KTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~------l~~-~--~~~~~~----~~~~~l~~~gv~i~~~~~v  202 (369)
                      ..+++|||+|+.|+.+|..|++.....+|+++++.+..      ++. +  .....+    .+.+.+++.|++++.++.+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            35799999999999999999864334679999876422      111 1  111111    2345567889999999888


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..+..++.  .+.+.+ .++++|.+|+|||.+|..+
T Consensus        84 ~~i~~~~~--~v~~~~-~~~~~d~lviAtG~~p~~p  116 (384)
T 2v3a_A           84 TGIDPGHQ--RIWIGE-EEVRYRDLVLAWGAEPIRV  116 (384)
T ss_dssp             CEEEGGGT--EEEETT-EEEECSEEEECCCEEECCC
T ss_pred             EEEECCCC--EEEECC-cEEECCEEEEeCCCCcCCC
Confidence            87764333  455544 4799999999999987643

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.94  E-value=5.5e-06  Score=78.57  Aligned_cols=43  Identities=26%  Similarity=0.429  Sum_probs=34.0

Q ss_pred             ccCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865            8 QSEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (369)
Q Consensus         8 ~~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~   50 (369)
                      .+....+||+|||||++||+||+.|+ .|++|+|+|+++.+|..
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr   54 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGA   54 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTT
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCce
Confidence            34456789999999999999999997 49999999999988754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.94  E-value=5.3e-05  Score=71.85  Aligned_cols=96  Identities=23%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------------------------cc--CC------c--
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------------------EF--IG------P--  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------------------------~~--~~------~--  179 (369)
                      .+++|||+|+.|+.+|..+++  .+.+|+++++++ +.                           ..  +.      +  
T Consensus        12 ~dVvVIGgG~aGl~aA~~l~~--~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   88 (479)
T 2hqm_A           12 YDYLVIGGGSGGVASARRAAS--YGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH   88 (479)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred             CCEEEEcCCHHHHHHHHHHHH--CCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence            579999999999999999985  489999999864 10                           00  00      0  


Q ss_pred             -----------------chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCch
Q 046865          180 -----------------KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       180 -----------------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~  238 (369)
                                       .+...+.+.+++.||+++.++ +..+  +.+.+.+.+.+|+  ++.+|.+|+|||.+|..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  163 (479)
T 2hqm_A           89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN--KDGNVEVQKRDNTTEVYSANHILVATGGKAIFP  163 (479)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC--TTSCEEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe--eCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence                             011223455677899999885 4444  3345667777776  899999999999987654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.93  E-value=4e-06  Score=79.01  Aligned_cols=35  Identities=37%  Similarity=0.569  Sum_probs=31.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +++||+|||||++|+++|..|+ .|.+|+|||+.+.
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~   40 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW   40 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            3589999999999999999997 5999999999875

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.93  E-value=4.1e-05  Score=72.37  Aligned_cols=98  Identities=18%  Similarity=0.235  Sum_probs=67.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc--------------------------cccc---CC-----cch
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR--------------------------LLEF---IG-----PKA  181 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~--------------------------~l~~---~~-----~~~  181 (369)
                      ..+++|||+|+.|+.+|..+++  .+.+|+++++..-                          ..+.   .+     .+.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVE--QGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR   81 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence            4679999999999999999985  3889999998730                          0111   10     011


Q ss_pred             HH----------H-----HHHHHHhC-CcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCch
Q 046865          182 GD----------K-----TLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       182 ~~----------~-----~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~  238 (369)
                      .+          .     ..+.+++. ||+++.++ +..++  .+.+.+.+.+|  +++++|.+|+|||.+|..+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  153 (467)
T 1zk7_A           82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFKD--DQSLTVRLNEGGERVVMFDRCLVATGASPAVP  153 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEEE--TTEEEEEETTSSEEEEECSEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEcc--CCEEEEEeCCCceEEEEeCEEEEeCCCCCCCC
Confidence            11          1     12445666 99999875 54443  34566777777  6799999999999887643

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.92  E-value=7e-06  Score=78.09  Aligned_cols=52  Identities=15%  Similarity=0.063  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC---cEEeccEEEEcCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG---DTIKADCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~i~~d~vi~a~G~  233 (369)
                      .+.+.+.+.+.+  .+|+++++|++|+.+++.+.|++.+|   +++.+|.||+|++.
T Consensus       240 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~  294 (489)
T 2jae_A          240 RIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPP  294 (489)
T ss_dssp             HHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCH
T ss_pred             HHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCH
Confidence            455666655532  78999999999987777777877776   57999999999865

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.92  E-value=1.3e-05  Score=76.03  Aligned_cols=96  Identities=21%  Similarity=0.180  Sum_probs=67.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------c---------------------------cCCc-
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------E---------------------------FIGP-  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------~---------------------------~~~~-  179 (369)
                      .+++|||+|+.|+.+|..+++  .+.+|+++++.+.+.         |                           ..+. 
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDID   84 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            469999999999999999885  489999999865431         0                           0000 


Q ss_pred             c-----------hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC------------cEEeccEEEEcCCCCCC
Q 046865          180 K-----------AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG------------DTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g------------~~i~~d~vi~a~G~~p~  236 (369)
                      .           +...+.+.+++.||+++.++.+. +  +++.+.+.+.+|            .++.+|.+|+|||.+|.
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A           85 MLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-L--DPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-E--ETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-c--cCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence            0           11123456677899999988654 2  334455655555            57999999999999875


Q ss_pred             c
Q 046865          237 S  237 (369)
Q Consensus       237 ~  237 (369)
                      .
T Consensus       162 ~  162 (482)
T 1ojt_A          162 K  162 (482)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.92  E-value=8.1e-05  Score=72.31  Aligned_cols=55  Identities=18%  Similarity=0.029  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHhCCcEEEeCceeeeccCCC-CCeE-EEcC------CC---------cEEeccEEEEcCCCCC
Q 046865          181 AGDKTLDWLISKKVDVKLGQRVNLDSVSE-GSDT-YLTS------TG---------DTIKADCHFLCTGKPV  235 (369)
Q Consensus       181 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~-v~~~------~g---------~~i~~d~vi~a~G~~p  235 (369)
                      +.+.+.+.+++.||+|+.++.+.++..++ +.+. |.+.      +|         .++.+|.||.|+|...
T Consensus       146 l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          146 LVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence            45567777888899999999999887654 3343 6554      33         5899999999999864

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.89  E-value=7.1e-06  Score=75.71  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=31.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ++||+|||||++|+++|..|+ .|.+|+|||+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            579999999999999999997 4999999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.88  E-value=1.2e-05  Score=75.59  Aligned_cols=94  Identities=17%  Similarity=0.261  Sum_probs=62.7

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEe-eeeeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVAS-PAINIT   88 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (369)
                      ..+|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+...       .++....    ...+.+  .+++++.+ .+..++
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------~~~~~~~----~l~~~l~~~Gv~i~~~~~v~~i~  235 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-------FDPMISE----TLVEVMNAEGPQLHTNAIPKAVV  235 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------SCHHHHH----HHHHHHHHHSCEEECSCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-------hhHHHHH----HHHHHHHHCCCEEEeCCEEEEEE
Confidence            579999999999999999886 59999999998754310       1111100    001111  24555543 344443


Q ss_pred             c-----ceEEecCCeEEeccEEEEccCCCCCCCC
Q 046865           89 E-----NEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        89 ~-----~~v~~~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                      .     ..+.+.+|+++.+|.+++|+|.+|+.+.
T Consensus       236 ~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~  269 (450)
T 1ges_A          236 KNTDGSLTLELEDGRSETVDCLIWAIGREPANDN  269 (450)
T ss_dssp             ECTTSCEEEEETTSCEEEESEEEECSCEEESCTT
T ss_pred             EeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCC
Confidence            2     1566778888999999999999988753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.88  E-value=1.2e-05  Score=75.90  Aligned_cols=96  Identities=25%  Similarity=0.319  Sum_probs=61.1

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (369)
                      ..+|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+...       .++.+.. .+.... ...+++++.+ .+..++..
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------~~~~~~~-~l~~~l-~~~gV~i~~~~~v~~i~~~  239 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-------GDPETAA-LLRRAL-EKEGIRVRTKTKAVGYEKK  239 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------SCHHHHH-HHHHHH-HHTTCEEECSEEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-------cCHHHHH-HHHHHH-HhcCCEEEcCCEEEEEEEe
Confidence            479999999999999999886 59999999998754311       0111100 000000 0125566543 44444321


Q ss_pred             ----eEEec-C--Ce--EEeccEEEEccCCCCCCCC
Q 046865           91 ----EVLTA-E--GR--RVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        91 ----~v~~~-~--g~--~~~~d~lviAtG~~~~~p~  117 (369)
                          .+.+. +  |+  ++.+|.+++|+|.+|+.+.
T Consensus       240 ~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  275 (464)
T 2eq6_A          240 KDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG  275 (464)
T ss_dssp             TTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred             CCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence                34443 5  65  8999999999999988764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.88  E-value=8e-06  Score=73.20  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=32.7

Q ss_pred             CcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~   48 (369)
                      ..+||+|||||++|+++|+.|++   |++|+|||+++..+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G  117 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG  117 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence            35899999999999999999964   99999999987654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.86  E-value=1.2e-05  Score=73.58  Aligned_cols=39  Identities=18%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             cceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~   51 (369)
                      ++||+|||||++|+++|++|++ |.+|+|+|+++.+|...
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~   40 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcce
Confidence            3799999999999999999975 89999999998887543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.85  E-value=9.7e-06  Score=75.29  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=31.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCc-EEEEcCCCCc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYF   47 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~-V~lie~~~~~   47 (369)
                      ++||+|||||++|+++|..|+ .|.+ |+|||+.+..
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   40 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence            589999999999999999997 5999 9999998653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.83  E-value=1.6e-05  Score=75.00  Aligned_cols=96  Identities=19%  Similarity=0.294  Sum_probs=62.7

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE-   89 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (369)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...       .++.........+.  ..+++++.+ .+..++. 
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-------~~~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~~  236 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-------FDPLLSATLAENMH--AQGIETHLEFAVAALERD  236 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------SCHHHHHHHHHHHH--HTTCEEESSCCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-------cCHHHHHHHHHHHH--HCCCEEEeCCEEEEEEEe
Confidence            569999999999999999886 59999999998654311       11111000000000  124555543 3444432 


Q ss_pred             ---ceEEecCCe-EEeccEEEEccCCCCCCCC
Q 046865           90 ---NEVLTAEGR-RVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        90 ---~~v~~~~g~-~~~~d~lviAtG~~~~~p~  117 (369)
                         ..+.+.+|+ ++.+|.+++|+|.+|+.+.
T Consensus       237 ~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~  268 (463)
T 2r9z_A          237 AQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRD  268 (463)
T ss_dssp             TTEEEEEETTCCEEEEESEEEECSCEEESCTT
T ss_pred             CCeEEEEEeCCcEEEEcCEEEECCCCCcCCCC
Confidence               256677888 8999999999999987753

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.82  E-value=8.4e-05  Score=68.60  Aligned_cols=96  Identities=17%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CCcch----------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGPKA----------------------------  181 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~~~~----------------------------  181 (369)
                      -+|+|||+|+.|+-+|..|++  .|.+|+++++.+.+...       +.+..                            
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~--~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~   79 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRK--HGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSR   79 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCE
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCccee
Confidence            479999999999999999985  48999999986432110       00000                            


Q ss_pred             -------------------------------HHHHHHHHHh-CCcEEEeCceeeeccCC-CCCeEEEcCCCcEEeccEEE
Q 046865          182 -------------------------------GDKTLDWLIS-KKVDVKLGQRVNLDSVS-EGSDTYLTSTGDTIKADCHF  228 (369)
Q Consensus       182 -------------------------------~~~~~~~l~~-~gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~d~vi  228 (369)
                                                     ...+.+.|.+ .+.+++.+++++.++.. ++.++++++||+++++|+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvV  159 (412)
T 4hb9_A           80 FYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLV  159 (412)
T ss_dssp             EECTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEE
T ss_pred             EecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEE
Confidence                                           0123343332 35568889888888654 44688999999999999999


Q ss_pred             EcCCCC
Q 046865          229 LCTGKP  234 (369)
Q Consensus       229 ~a~G~~  234 (369)
                      -|-|..
T Consensus       160 gADG~~  165 (412)
T 4hb9_A          160 GADGSN  165 (412)
T ss_dssp             ECCCTT
T ss_pred             ECCCCC
Confidence            999975

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.81  E-value=8.8e-05  Score=70.24  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=67.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc------c----------------------------cccC-----
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR------L----------------------------LEFI-----  177 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~------~----------------------------l~~~-----  177 (369)
                      -+++|||+|+.|+..|..+++.  |.+|+++++.+.      +                            +..+     
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            4699999999999999999864  899999998751      0                            0000     


Q ss_pred             ----C------------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCC
Q 046865          178 ----G------------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVG  236 (369)
Q Consensus       178 ----~------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~  236 (369)
                          +            ..+...+...+++.+|+++.++... +  +.+.+.+.+.+|  .++.+|.+|+|||.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~--~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~  155 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL-L--AGKKVEVTAADGSSQVLDTENVILASGSKPV  155 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE-C--STTCEEEECTTSCEEEECCSCEEECCCEEEC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cCCEEEEEcCCCceEEEEcCEEEEcCCCCCC
Confidence                0            0111223345667799999887543 2  345677777777  57999999999999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.80  E-value=1.3e-05  Score=83.06  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=69.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCcccc-------cc--CCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLL-------EF--IGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~~l-------~~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      .++|+|||+|+.|+.+|..|++.  |. +|+++++.+.+.       +.  .+.+..+...+.+++.||++++++.+.. 
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~--G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE-  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST-
T ss_pred             CCEEEEECccHHHHHHHHHHHhc--CCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc-
Confidence            46899999999999999999853  76 799999986542       11  2345566667788999999999987742 


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCC-CCC
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGK-PVG  236 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~-~p~  236 (369)
                          .  .+++.++.++.+|.||+|||. +|.
T Consensus       264 ----~--~v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          264 ----N--EITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             ----T--SBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             ----c--eEEhhhcCccCCCEEEEecCCCCCC
Confidence                1  133444556789999999998 464

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.80  E-value=1.5e-05  Score=75.76  Aligned_cols=43  Identities=21%  Similarity=0.116  Sum_probs=36.6

Q ss_pred             CCcceEEEECCChHHHHHHHHccc-C-CcEEEEcCCCCccccccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEYFEITWAS   53 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~-g-~~V~lie~~~~~~~~~~~   53 (369)
                      .+++||+|||||++||++|+.|++ | .+|+|+|+++.+|..+..
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            456899999999999999999974 6 799999999988765443

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.80  E-value=1.3e-05  Score=76.47  Aligned_cols=56  Identities=7%  Similarity=-0.058  Sum_probs=48.8

Q ss_pred             cchHHHHHHHHHhCC-cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKK-VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+.+.+.+.+++.| ++|+++++|++|+.+++.+.|++.+|+++++|.||+|+|..
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence            367788888898888 99999999999987777788888888889999999999963

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.79  E-value=4.5e-05  Score=75.48  Aligned_cols=86  Identities=23%  Similarity=0.266  Sum_probs=64.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc------cCC-----cchHHHHHHHHHhCCcEEEeCceeee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------FIG-----PKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~------~~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      .++++|||+|+.|+.+|..+++  .+.+|+++++.+.+..      ..+     .+....+.+.+++.||++++++.+..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH
Confidence            4689999999999999999985  4899999999865421      111     12344566777888999999986642


Q ss_pred             ccCCCCCeEEEcCCCcEE-eccEEEEcCCCCCCch
Q 046865          205 DSVSEGSDTYLTSTGDTI-KADCHFLCTGKPVGSD  238 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i-~~d~vi~a~G~~p~~~  238 (369)
                      .               .+ .+|.+|+|||.+|..+
T Consensus       451 ~---------------~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          451 D---------------QLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             S---------------SSCCSSEEEECCCEEECCC
T ss_pred             H---------------HhhcCCEEEEccCCCcCCC
Confidence            1               13 8999999999987654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.77  E-value=1.6e-05  Score=75.34  Aligned_cols=39  Identities=21%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             cEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          194 VDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       194 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ++|+++++|++|+.+++.+.|++.+| ++.+|.||+|++.
T Consensus       249 ~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~  287 (475)
T 3lov_A          249 SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPH  287 (475)
T ss_dssp             CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCH
T ss_pred             CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCH
Confidence            79999999999987777788888888 8999999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.77  E-value=2.1e-05  Score=75.41  Aligned_cols=97  Identities=13%  Similarity=0.109  Sum_probs=61.0

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeeec
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINITE   89 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   89 (369)
                      .+.+++|||||+.|+..|..+++ |.+|+|+++...+.        ..+++........+.  ..++++..+. +..+..
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~--------~~D~ei~~~l~~~l~--~~gi~~~~~~~v~~~~~  291 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR--------GFDQQCAVKVKLYME--EQGVMFKNGILPKKLTK  291 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST--------TSCHHHHHHHHHHHH--HTTCEEEETCCEEEEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc--------ccchhHHHHHHHHHH--hhcceeecceEEEEEEe
Confidence            45799999999999999998874 99999999754321        011111110000011  1245554332 222221


Q ss_pred             --c--eEEecCCeEEeccEEEEccCCCCCCCCC
Q 046865           90 --N--EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (369)
Q Consensus        90 --~--~v~~~~g~~~~~d~lviAtG~~~~~p~~  118 (369)
                        .  .+.+.++..+.+|.+++|+|.+|+...+
T Consensus       292 ~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L  324 (542)
T 4b1b_A          292 MDDKILVEFSDKTSELYDTVLYAIGRKGDIDGL  324 (542)
T ss_dssp             ETTEEEEEETTSCEEEESEEEECSCEEESCGGG
T ss_pred             cCCeEEEEEcCCCeEEEEEEEEcccccCCcccc
Confidence              1  4566777889999999999999887543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.76  E-value=2e-05  Score=74.07  Aligned_cols=56  Identities=9%  Similarity=-0.120  Sum_probs=46.9

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccC-CCCC-eEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSV-SEGS-DTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~-~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .++.+.+.+.+++.|++|+++++|+++.. +++. ..|++.+|++++||.||+++++.
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            48889999999999999999999999876 4443 46778888899999999999988

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.76  E-value=2e-05  Score=72.54  Aligned_cols=39  Identities=21%  Similarity=0.511  Sum_probs=34.8

Q ss_pred             cceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~   51 (369)
                      ++||+|||||++|+++|+.|++ |.+|+|+|+++.+|..+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~   42 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   42 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcc
Confidence            4799999999999999999974 89999999999887654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.76  E-value=1.2e-05  Score=78.11  Aligned_cols=37  Identities=27%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-c------CCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-F------SADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~------g~~V~lie~~~~~~   48 (369)
                      +.+||||||||++|+++|..|+ .      |.+|+||||.+..+
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g   77 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   77 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCC
Confidence            3589999999999999999986 4      89999999987654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.76  E-value=4.2e-05  Score=70.23  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=66.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc----------------------c-cc-----------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL----------------------L-EF-----------------  176 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~----------------------l-~~-----------------  176 (369)
                      .+|+|||||+.|+.+|..|++..+|.+|+++++.+.+                      . ..                 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            3699999999999999999876569999999987543                      0 00                 


Q ss_pred             ---------------CCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          177 ---------------IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       177 ---------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                                     ...++.+.+.+.+++.|++++++++|++++..           +++++|.||.|.|...
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S  143 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNH  143 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGG
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCc
Confidence                           00235566777788889999999999887531           1357899999998754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.76  E-value=4.7e-05  Score=72.62  Aligned_cols=95  Identities=14%  Similarity=0.185  Sum_probs=61.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec-
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE-   89 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (369)
                      ..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...       .++...........  -.+++++.+ .+..++. 
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------~d~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~~  246 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-------FDESVINVLENDMK--KNNINIVTFADVVEIKKV  246 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-------SCHHHHHHHHHHHH--HTTCEEECSCCEEEEEES
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-------cchhhHHHHHHHHH--hCCCEEEECCEEEEEEEc
Confidence            579999999999999999886 59999999998754310       11111100000000  124555543 3444432 


Q ss_pred             ----ceEEecCCeE-EeccEEEEccCCCCCCC
Q 046865           90 ----NEVLTAEGRR-VVYDYLVIATGHKDPVP  116 (369)
Q Consensus        90 ----~~v~~~~g~~-~~~d~lviAtG~~~~~p  116 (369)
                          ..+.+.+|++ +.+|.+++|+|.+|+.+
T Consensus       247 ~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~  278 (500)
T 1onf_A          247 SDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE  278 (500)
T ss_dssp             STTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred             CCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence                1466678877 99999999999998764

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.74  E-value=1.9e-05  Score=75.23  Aligned_cols=41  Identities=29%  Similarity=0.344  Sum_probs=35.9

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      ..++||+|||||++||+||+.|+ .|.+|+|+|+++.+|...
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   72 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCce
Confidence            34689999999999999999997 499999999998887543

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.74  E-value=1.7e-05  Score=73.47  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=31.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-c--CCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~--g~~V~lie~~~~   46 (369)
                      ..+||+|||||++|+++|+.|+ +  |++|+|||+++.
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            3589999999999999999985 5  999999999754

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.73  E-value=2.3e-05  Score=73.29  Aligned_cols=58  Identities=9%  Similarity=-0.083  Sum_probs=47.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ..+.+.+.+.+++.|++|+++++|+++..+++.+.....+|+++.+|.||+|+|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence            4788889998999999999999999987666655433457888999999999998753

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.73  E-value=0.00011  Score=70.38  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=66.6

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------------------------------ccC------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------------------------EFI------  177 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------------------------------~~~------  177 (369)
                      .+++|||+|+.|+.+|..|++.  +.+|+++++.+.+.                                 +..      
T Consensus        44 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~  121 (523)
T 1mo9_A           44 YDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVG  121 (523)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhh
Confidence            5799999999999999999853  89999999987321                                 100      


Q ss_pred             CcchHHHH----H---HHH-----HhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          178 GPKAGDKT----L---DWL-----ISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       178 ~~~~~~~~----~---~~l-----~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                      ..++.+.+    .   +.+     ++.|++++++..+..+..  .  .+.+. ++++.+|.+|+|||.+|..+
T Consensus       122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~--~v~~~-g~~~~~d~lViATGs~p~~p  189 (523)
T 1mo9_A          122 IKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--H--TVEAA-GKVFKAKNLILAVGAGPGTL  189 (523)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--T--EEEET-TEEEEBSCEEECCCEECCCC
T ss_pred             HHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--C--EEEEC-CEEEEeCEEEECCCCCCCCC
Confidence            01122222    2   455     778999996666666542  2  34444 67899999999999987643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.72  E-value=0.00015  Score=68.35  Aligned_cols=92  Identities=23%  Similarity=0.183  Sum_probs=64.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------c-----------------------cC-----Cc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------E-----------------------FI-----GP  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------~-----------------------~~-----~~  179 (369)
                      .+++|||+|+.|+.+|..+++.  +.+|+++++. .+.         |                       ..     ..
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~   82 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRL   82 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCcc
Confidence            5799999999999999999864  8899999984 220         0                       00     00


Q ss_pred             chH--------------HHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          180 KAG--------------DKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       180 ~~~--------------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      +..              ..+.+.+++.||+++.++.+. +  +.  ..+.+.+ +++++|.+|+|||.+|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~--~~--~~v~v~~-~~~~~d~lviATGs~p~~  148 (458)
T 1lvl_A           83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-L--DG--KQVEVDG-QRIQCEHLLLATGSSSVE  148 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-E--ET--TEEEETT-EEEECSEEEECCCEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-c--cC--CEEEEee-EEEEeCEEEEeCCCCCCC
Confidence            111              113356778899999997654 2  22  2455554 689999999999998753

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.71  E-value=2e-05  Score=76.46  Aligned_cols=37  Identities=35%  Similarity=0.373  Sum_probs=33.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ..+||||||||++|++||..|+ +|.+|+||||.+..+
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~g  162 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG  162 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            3689999999999999999986 599999999988654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.71  E-value=2.1e-05  Score=75.64  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             CCcceEEEECCChHHHHHHHHcccCCcEEEEcCCCCc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF   47 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~   47 (369)
                      ...+||||||||++|++||..|++|.+|+||||.+..
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~G~~V~vlEk~~~~   42 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVT   42 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTSCEEEECSSCTT
T ss_pred             CCCCCEEEECccHHHHHHHHHHhcCCcEEEEECCCCC
Confidence            3468999999999999999998669999999998754

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.70  E-value=2e-05  Score=76.35  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ..+||||||||++|++||..|+ .|.+|+||||.+..+
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~g  157 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG  157 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            4689999999999999999987 599999999987654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.69  E-value=2.4e-05  Score=69.68  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=32.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-c--CCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~--g~~V~lie~~~~~~   48 (369)
                      ..+||+|||||++|+++|..|+ .  |.+|+|+|+++..+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~g  103 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccc
Confidence            3469999999999999999986 4  89999999987654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.69  E-value=0.00026  Score=63.01  Aligned_cols=165  Identities=18%  Similarity=0.139  Sum_probs=97.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc--------------------------------------CC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------IG  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~--------------------------------------~~  178 (369)
                      .+++|||+|+.|+.+|..|++..++.+|+++++.+.....                                      ..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~  145 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA  145 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence            4799999999999999999875568999999986543200                                      01


Q ss_pred             cchHHHHHHHHHh-CCcEEEeCceeeeccCCC----C--Ce-EEEc------C--------CCcEEec------------
Q 046865          179 PKAGDKTLDWLIS-KKVDVKLGQRVNLDSVSE----G--SD-TYLT------S--------TGDTIKA------------  224 (369)
Q Consensus       179 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~----~--~~-~v~~------~--------~g~~i~~------------  224 (369)
                      .++...+.+.+.+ .||+++.++.|.++..++    +  .+ .+.+      .        ++.++.+            
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~  225 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS  225 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence            2234556666666 499999999998876542    2  22 1221      1        3357999            


Q ss_pred             ---cEEEEcCCCCCC-chhhcccc--cCC--CCCCCCcE--------EeCCceeeccCCCeEEecccCC----cc--ccc
Q 046865          225 ---DCHFLCTGKPVG-SDWLKDTI--LKD--SLDTDGML--------MVDENLRVKGQKNIFAIGDITD----IR--EIK  282 (369)
Q Consensus       225 ---d~vi~a~G~~p~-~~~l~~~~--~~~--~~~~~g~i--------~vd~~l~~~~~~~i~a~GD~~~----~~--~~~  282 (369)
                         +.||.|||.... ..++....  ++.  .+.....+        .|+..-...-+|++|++|-.+.    .+  .|-
T Consensus       226 ~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~~  305 (326)
T 2gjc_A          226 QKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPT  305 (326)
T ss_dssp             TTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCSC
T ss_pred             ccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCChh
Confidence               999999997633 23322211  100  01100111        1222222124899999998652    21  111


Q ss_pred             hhHHHHHHHHHHHHHHHHHh
Q 046865          283 QGFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       283 ~~~~A~~~g~~~a~~i~~~~  302 (369)
                      ++ .-.-+|+.+|+.|+..+
T Consensus       306 fg-~m~~sg~~~a~~~~~~~  324 (326)
T 2gjc_A          306 FG-AMALSGVHAAEQILKHF  324 (326)
T ss_dssp             CH-HHHHHHHHHHHHHHHHH
T ss_pred             hh-hhhhhhHHHHHHHHHHh
Confidence            12 23457888888887654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=97.69  E-value=0.00013  Score=66.74  Aligned_cols=95  Identities=18%  Similarity=0.125  Sum_probs=67.9

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc--------------C--------------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------I--------------------------  177 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~--------------~--------------------------  177 (369)
                      .|+|||+|+.|+-+|..|++  .|.+|+++++.+.+...              +                          
T Consensus         6 DViIVGaGpaGl~~A~~La~--~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP   83 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence            58999999999999999985  48999999986432100              0                          


Q ss_pred             ----------------C-cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EE-cCCC--cEEeccEEEEcCCCC
Q 046865          178 ----------------G-PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YL-TSTG--DTIKADCHFLCTGKP  234 (369)
Q Consensus       178 ----------------~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~-~~~g--~~i~~d~vi~a~G~~  234 (369)
                                      + ..+...+.+.+++.|++++.++.+..+..+++.+. +. ..++  .++.+|.||-|.|..
T Consensus        84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~  161 (397)
T 3oz2_A           84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFE  161 (397)
T ss_dssp             EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred             eeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccc
Confidence                            0 12334566677788999999999988766555432 22 2233  368999999999974

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.68  E-value=0.00018  Score=68.28  Aligned_cols=98  Identities=15%  Similarity=0.134  Sum_probs=64.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEc--------Cccccc---------------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK--------GSRLLE---------------------------------  175 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~--------~~~~l~---------------------------------  175 (369)
                      .+++|||+|+.|+.+|..+++. .+.+|+++++        .+.+..                                 
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~-~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASL-HKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             ccEEEECCCHHHHHHHHHHHHH-cCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            3699999999999999999861 3899999992        222100                                 


Q ss_pred             -----cCCc-c-----------hHHHHHHHHHhC-CcEEEeCceeeeccCCCCCeEEEc---CCC---cEEeccEEEEcC
Q 046865          176 -----FIGP-K-----------AGDKTLDWLISK-KVDVKLGQRVNLDSVSEGSDTYLT---STG---DTIKADCHFLCT  231 (369)
Q Consensus       176 -----~~~~-~-----------~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~v~~---~~g---~~i~~d~vi~a~  231 (369)
                           .++. +           +...+.+.+++. ||+++.++ +..+.  ...+.+..   .+|   +++.+|.+|+||
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~--~~~v~v~~~~~~~g~~~~~~~~d~lviAt  159 (490)
T 1fec_A           83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQD--NHTVLVRESADPNSAVLETLDTEYILLAT  159 (490)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEEE--TTEEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEee--CCEEEEEeeccCCCCceEEEEcCEEEEeC
Confidence                 0000 1           112234456677 99999986 44443  23344443   366   689999999999


Q ss_pred             CCCCCch
Q 046865          232 GKPVGSD  238 (369)
Q Consensus       232 G~~p~~~  238 (369)
                      |.+|..+
T Consensus       160 Gs~p~~p  166 (490)
T 1fec_A          160 GSWPQHL  166 (490)
T ss_dssp             CEEECCC
T ss_pred             CCCCCCC
Confidence            9887643

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.67  E-value=2.5e-05  Score=71.73  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=30.7

Q ss_pred             ceEEEECCChHHHHHHHHcc-c--CCcEEEEcCCCCc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF   47 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~--g~~V~lie~~~~~   47 (369)
                      +||+|||||++|+++|..|+ .  |.+|+|+|+++..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            48999999999999999986 4  9999999998765

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.66  E-value=2.2e-05  Score=75.38  Aligned_cols=55  Identities=15%  Similarity=0.103  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHh-CCcEEEeCceeeeccCCCCC--eEEEcCCCcEEeccEEEEcCCCCC
Q 046865          180 KAGDKTLDWLIS-KKVDVKLGQRVNLDSVSEGS--DTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .+.+.+.+.+++ .|++++.+ .|+.++.+++.  +.+++.+|+++++|.||.|+|...
T Consensus       176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred             HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence            567788888888 89999999 58888755433  356777877899999999999864

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.65  E-value=2.9e-05  Score=70.35  Aligned_cols=44  Identities=18%  Similarity=0.040  Sum_probs=34.9

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+...+.+.+++.|++++. ++|+.++..+           .+.+|.||+|+|..
T Consensus       142 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~  185 (351)
T 3g3e_A          142 KNYLQWLTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVW  185 (351)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcC
Confidence            47788888999999999998 8887764321           26799999999975

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.65  E-value=3.4e-05  Score=76.57  Aligned_cols=87  Identities=20%  Similarity=0.184  Sum_probs=66.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------cc--CCcchHHHHHHHHHhC-CcEEEeCceee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------EF--IGPKAGDKTLDWLISK-KVDVKLGQRVN  203 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------~~--~~~~~~~~~~~~l~~~-gv~i~~~~~v~  203 (369)
                      .++|+|||||+.|+.+|..|+++  +.+|+++++++.+.         +.  ...++...+.+.+++. ||++++++.+.
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~--G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  468 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVR--GYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT  468 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC
T ss_pred             cceEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec
Confidence            46899999999999999999865  89999999976542         11  1235566777788887 99999887543


Q ss_pred             eccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          204 LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .            .+++++.+|.+|+|||..|.
T Consensus       469 ~------------~~~~~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          469 G------------DDIVEFGFEHVITATGATWR  489 (690)
T ss_dssp             H------------HHHHHTTCCEEEECCCEEEC
T ss_pred             H------------HHHhhcCCCEEEEcCCCccc
Confidence            2            23346789999999999854

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.65  E-value=5.2e-05  Score=72.20  Aligned_cols=95  Identities=18%  Similarity=0.248  Sum_probs=62.3

Q ss_pred             cceEEEECCChHHHHHHHHcc-c---CCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINI   87 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   87 (369)
                      ..+++|||||+.|+.+|..|+ .   |.+|++|++.+.+...       .++...........  ..+++++.+ .+..+
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-------~d~~~~~~l~~~l~--~~GV~i~~~~~v~~i  261 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-------FDETIREEVTKQLT--ANGIEIMTNENPAKV  261 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-------SCHHHHHHHHHHHH--HTTCEEEESCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-------cCHHHHHHHHHHHH--hCCCEEEeCCEEEEE
Confidence            579999999999999998875 5   9999999998754311       11111100000000  125666544 34444


Q ss_pred             ec-----ceEEecCCeEEeccEEEEccCCCCCCC
Q 046865           88 TE-----NEVLTAEGRRVVYDYLVIATGHKDPVP  116 (369)
Q Consensus        88 ~~-----~~v~~~~g~~~~~d~lviAtG~~~~~p  116 (369)
                      ..     ..+.+.+|+++.+|.+++|+|.+|+..
T Consensus       262 ~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          262 SLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             EECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred             EEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence            32     146677888899999999999998764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.64  E-value=0.00012  Score=69.39  Aligned_cols=96  Identities=18%  Similarity=0.231  Sum_probs=66.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc------------------------------------cCC-
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------------------------------------FIG-  178 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~------------------------------------~~~-  178 (369)
                      ..+++|||+|+.|+.+|..+++.  +.+|+++++.. +..                                    .++ 
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~--G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAEL--GARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW   96 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            35799999999999999999853  89999999763 100                                    000 


Q ss_pred             -----------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          179 -----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       179 -----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                                 ..+...+...+++.+|+++.++.. .+.  .....+. .+++++.+|.+|+|||.+|..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~--~~~~~v~-~~g~~~~~d~lviAtG~~p~~p  163 (478)
T 3dk9_A           97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAA-FTS--DPKPTIE-VSGKKYTAPHILIATGGMPSTP  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEE-ECS--CSSCEEE-ETTEEEECSCEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEE-Eee--CCeEEEE-ECCEEEEeeEEEEccCCCCCCC
Confidence                       012233455667789999988633 222  2234455 4677899999999999887643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.63  E-value=0.00015  Score=68.86  Aligned_cols=92  Identities=20%  Similarity=0.215  Sum_probs=65.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------------c---------CC--
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------F---------IG--  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------------------~---------~~--  178 (369)
                      .+++|||+|+.|+.+|..|++.  |.+|+++++.. +..                           .         ++  
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~-~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~  103 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGAL--GKRVAIAEEYR-IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWE  103 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhC--cCEEEEEeCCC-CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            4799999999999999999853  89999999842 110                           0         00  


Q ss_pred             ----------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC-CCcEEeccEEEEcCCCCCC
Q 046865          179 ----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS-TGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 ----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g~~i~~d~vi~a~G~~p~  236 (369)
                                ..+...+.+.+++.+++++.+. +..+.  ..  .+.+. +++++.+|.+|+|||.+|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~i~--~~--~v~v~~~~~~~~~d~lviAtG~~p~  167 (484)
T 3o0h_A          104 KLVAAKNKEISRLEGLYREGLQNSNVHIYESR-AVFVD--EH--TLELSVTGERISAEKILIATGAKIV  167 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEE--TT--EEEETTTCCEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEee--CC--EEEEecCCeEEEeCEEEEccCCCcc
Confidence                      0223345566778899999884 33332  22  34444 6789999999999998876

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.62  E-value=0.00014  Score=68.52  Aligned_cols=92  Identities=17%  Similarity=0.201  Sum_probs=64.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc---------------------------cc---------CC--
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------------------EF---------IG--  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l---------------------------~~---------~~--  178 (369)
                      -+++|||+|+.|+.+|..|++  .|.+|+++++.. +.                           +.         ++  
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~--~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAA--LGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWA   82 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHH
T ss_pred             CcEEEECcCHHHHHHHHHHHh--CCCEEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHH
Confidence            379999999999999999985  489999999842 11                           00         00  


Q ss_pred             ----------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc-CCCcEEeccEEEEcCCCCCC
Q 046865          179 ----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT-STGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 ----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~i~~d~vi~a~G~~p~  236 (369)
                                ..+...+.+.+++.+++++.+. +..+.  .  ..+.+ .+++++.+|.+|+|||.+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~--~--~~v~~~~~~~~~~~d~lviAtG~~p~  146 (463)
T 4dna_A           83 KLVAAKEQEIARLEGLYRKGLANAGAEILDTR-AELAG--P--NTVKLLASGKTVTAERIVIAVGGHPS  146 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEESS--S--SEEEETTTTEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEee--C--CEEEEecCCeEEEeCEEEEecCCCcc
Confidence                      0222334555677799999883 33332  2  24555 56778999999999998876

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.61  E-value=0.0001  Score=70.60  Aligned_cols=97  Identities=21%  Similarity=0.094  Sum_probs=65.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc--------ccc---------c------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--------RLL---------E------------------------  175 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~--------~~l---------~------------------------  175 (369)
                      -+++|||+|+.|+.+|..+++  .+.+|+++++.+        .+.         |                        
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQ--YGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            479999999999999999985  389999999743        000         0                        


Q ss_pred             ----cCCc------------chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCc
Q 046865          176 ----FIGP------------KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGS  237 (369)
Q Consensus       176 ----~~~~------------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~  237 (369)
                          ..+.            .+...+...+++.+|+++.+.. ..+  +...+.+.+.+|+  ++++|.+|+|||.+|..
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a-~~~--d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~  187 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYG-QFI--GPHRIKATNNKGKEKIYSAERFLIATGERPRY  187 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEE-EEE--ETTEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEe--eCCEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence                0000            0111223456678999987753 222  2345667766664  79999999999988765


Q ss_pred             h
Q 046865          238 D  238 (369)
Q Consensus       238 ~  238 (369)
                      +
T Consensus       188 p  188 (519)
T 3qfa_A          188 L  188 (519)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.60  E-value=0.00012  Score=75.17  Aligned_cols=100  Identities=18%  Similarity=0.086  Sum_probs=68.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---c-----CC----cchHHHHHHHHHhC-CcEEEeCcee
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---F-----IG----PKAGDKTLDWLISK-KVDVKLGQRV  202 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---~-----~~----~~~~~~~~~~l~~~-gv~i~~~~~v  202 (369)
                      ..+++|||+|+.|+.+|..+++  .+.+|+++++.+.+..   .     .+    .+....+.+.+.+. ++++++++.|
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~--~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V  205 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASR--SGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTV  205 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence            3579999999999999999985  3899999998765421   1     11    12334445556664 9999999988


Q ss_pred             eeccCCCC---------CeEEEc------CCCcEEeccEEEEcCCCCCCc
Q 046865          203 NLDSVSEG---------SDTYLT------STGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       203 ~~i~~~~~---------~~~v~~------~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      ..+...+.         .+.+.+      .++.++.+|.+|+|||..|..
T Consensus       206 ~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          206 FGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             EEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             EeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            77643221         111111      112368999999999987654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.59  E-value=4.4e-05  Score=69.20  Aligned_cols=46  Identities=15%  Similarity=0.215  Sum_probs=39.4

Q ss_pred             CCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          258 DENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       258 d~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      ++.|+++..+|+|++|++++...   -..|..||.+|+.|++..+.|++
T Consensus       320 ~~tle~k~~~~Lf~AGqi~G~~G---y~eAaa~Gl~AG~naa~~~~g~~  365 (443)
T 3g5s_A          320 GETLEFREAEGLYAAGVLAGVEG---YLESAATGFLAGLNAARKALGLP  365 (443)
T ss_dssp             CTTSEETTEEEEEECGGGGTBCS---HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ChhceecCCCCEEECccccccHH---HHHHHHhHHHHHHHHHHHhcCCC
Confidence            37799988999999999998743   24788999999999999998875

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.58  E-value=4.7e-05  Score=74.84  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~   46 (369)
                      ..+||+|||||++|+++|..|++  |.+|+||||.+.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            35799999999999999999965  999999999764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.58  E-value=3.3e-05  Score=75.87  Aligned_cols=34  Identities=26%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .+||||||||.+|++||++|+ .|.+|+||||.+.
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~   39 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV   39 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            579999999999999999987 4999999999764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.57  E-value=0.00033  Score=65.79  Aligned_cols=79  Identities=27%  Similarity=0.340  Sum_probs=50.1

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT  213 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  213 (369)
                      ...++++|+|||.+|..+|..|.+   ..+|.++++..        +-.+.+.+.|.  +..++.+-.-        ...
T Consensus       233 ~~~~~v~I~GgG~ig~~lA~~L~~---~~~v~iIE~d~--------~r~~~la~~l~--~~~Vi~GD~t--------d~~  291 (461)
T 4g65_A          233 KPYRRIMIVGGGNIGASLAKRLEQ---TYSVKLIERNL--------QRAEKLSEELE--NTIVFCGDAA--------DQE  291 (461)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHTT---TSEEEEEESCH--------HHHHHHHHHCT--TSEEEESCTT--------CHH
T ss_pred             ccccEEEEEcchHHHHHHHHHhhh---cCceEEEecCH--------HHHHHHHHHCC--CceEEecccc--------chh
Confidence            456899999999999999999863   57899998765        44445555443  3444333110        001


Q ss_pred             EEcCCCcEEeccEEEEcCCCC
Q 046865          214 YLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       214 v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      +..+.| --.+|.++.+|+.-
T Consensus       292 ~L~ee~-i~~~D~~ia~T~~D  311 (461)
T 4g65_A          292 LLTEEN-IDQVDVFIALTNED  311 (461)
T ss_dssp             HHHHTT-GGGCSEEEECCSCH
T ss_pred             hHhhcC-chhhcEEEEcccCc
Confidence            111112 34689999998864

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.55  E-value=4.3e-05  Score=75.37  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=30.6

Q ss_pred             cceEEEECCChHHHHHHHHccc------CCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF------SADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~------g~~V~lie~~~~   46 (369)
                      ++||+|||||++||++|..|++      |.+|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            5899999999999999999854      999999998754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.49  E-value=0.00015  Score=68.96  Aligned_cols=95  Identities=23%  Similarity=0.273  Sum_probs=58.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceecccccc-ccceEEEe-eeeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL-VNGRIVAS-PAINIT   88 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~   88 (369)
                      ...+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...       .++.+...    ..+.+ ..+++..+ .+..+.
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------~d~~~~~~----l~~~l~~~V~i~~~~~v~~i~  241 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-------QDEEMKRY----AEKTFNEEFYFDAKARVISTI  241 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-------CCHHHHHH----HHHHHHTTSEEETTCEEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-------CCHHHHHH----HHHHHhhCcEEEECCEEEEEE
Confidence            3579999999999999999886 59999999998765311       01111000    00000 01333322 223332


Q ss_pred             c--c--eEEec--CC--eEEeccEEEEccCCCCCCCC
Q 046865           89 E--N--EVLTA--EG--RRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        89 ~--~--~v~~~--~g--~~~~~d~lviAtG~~~~~p~  117 (369)
                      .  .  .+.+.  +|  .++.+|.+++|+|..|+.+.
T Consensus       242 ~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~  278 (492)
T 3ic9_A          242 EKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDK  278 (492)
T ss_dssp             ECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSS
T ss_pred             EcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCC
Confidence            1  1  23332  56  68999999999999987654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.49  E-value=6.4e-05  Score=73.31  Aligned_cols=35  Identities=23%  Similarity=0.167  Sum_probs=31.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ..+||||||||.||++||..|+ .|.+|+||||...
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~   52 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            3579999999999999999987 5999999999764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.48  E-value=4.2e-05  Score=74.50  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             CCcEEeCCceeeccCCCeEEecccCC--ccc---c--chhHHHHHHHHHHHHHHHHHhh
Q 046865          252 DGMLMVDENLRVKGQKNIFAIGDITD--IRE---I--KQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       252 ~g~i~vd~~l~~~~~~~i~a~GD~~~--~~~---~--~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      -|.|.||.+.|+ +.|++||+|+|++  ...   +  .....|.-.|++|+++++..+.
T Consensus       359 ~GGi~vd~~~~~-~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa~~~~  416 (602)
T 1kf6_A          359 MGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAA  416 (602)
T ss_dssp             CCEEECCTTSBC-SSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEECCCCcc-ccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHhhh
Confidence            588999999999 7999999999973  211   0  1123566779999999987653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.47  E-value=0.00067  Score=64.35  Aligned_cols=97  Identities=21%  Similarity=0.115  Sum_probs=64.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc--------ccc----------------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--------RLL----------------------------------  174 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~--------~~l----------------------------------  174 (369)
                      -.++|||+|+.|+.+|..+++  .+.+|+++++.+        .+.                                  
T Consensus         7 ~DvvVIG~G~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            7 FDLLVIGGGSGGLACAKEAAQ--LGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            369999999999999999985  389999998621        000                                  


Q ss_pred             ---ccCCc-c-----------hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCc
Q 046865          175 ---EFIGP-K-----------AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       175 ---~~~~~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~  237 (369)
                         ...+. .           +...+...+++.+|+++.+. +..+  +...+.+.+.+|  .++.+|.+|+|||.+|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~  161 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFV--DEHTVRGVDKGGKATLLSAEHIVIATGGRPRY  161 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEES--SSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence               00010 0           11123345667899998765 3322  234566777777  479999999999988764


Q ss_pred             h
Q 046865          238 D  238 (369)
Q Consensus       238 ~  238 (369)
                      +
T Consensus       162 p  162 (488)
T 3dgz_A          162 P  162 (488)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.46  E-value=7.6e-05  Score=70.60  Aligned_cols=54  Identities=15%  Similarity=0.041  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHhC--------CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          180 KAGDKTLDWLISK--------KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       180 ~~~~~~~~~l~~~--------gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      .+.+.+.+.+.+.        |.+|+++++|++|+.+++.+.|++.+|+++++|.||+|++.
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCH
Confidence            4555555555443        68899999999998777778888999989999999999875

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.46  E-value=7.1e-05  Score=73.57  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=31.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-----cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-----~g~~V~lie~~~~   46 (369)
                      ..+||||||||+||++||..|+     .|.+|+||||.+.
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            3589999999999999999987     3999999999864

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.45  E-value=7.9e-05  Score=71.50  Aligned_cols=35  Identities=43%  Similarity=0.619  Sum_probs=31.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc--cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~--~g~~V~lie~~~~   46 (369)
                      ..||+||||||+||+.+|.+|+  .+++|+|||+++.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            4799999999999999999997  4789999999865

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.44  E-value=6.9e-05  Score=73.61  Aligned_cols=46  Identities=9%  Similarity=0.039  Sum_probs=34.0

Q ss_pred             CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865          259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                      ..++| +.|++||+|||++......+..+.-+|++++.+++..+.+.
T Consensus       446 ~~~~t-~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~~~~~~~  491 (662)
T 3gyx_A          446 YNRMT-TVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDH  491 (662)
T ss_dssp             CTTBC-SSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCC-ccCCeEeCccccccccCccHhHHHHHHHHHHHHHHHHHhhC
Confidence            56777 79999999999854322224566678999999998887653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.43  E-value=9.9e-05  Score=72.85  Aligned_cols=40  Identities=38%  Similarity=0.639  Sum_probs=35.5

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~   50 (369)
                      ...+||+|||||++|++||+.|. +|++|+|+|+++.+|..
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~  145 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR  145 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            45689999999999999999996 59999999999887754

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.43  E-value=0.00049  Score=67.58  Aligned_cols=97  Identities=26%  Similarity=0.404  Sum_probs=70.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-----------------------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------------------------------------  175 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-----------------------------------------  175 (369)
                      .+|+|||+|++|+-+|..|++. .|.+|+++++.+....                                         
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~-~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~  111 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAF-PDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDP  111 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTC-TTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECT
T ss_pred             CcEEEECcCHHHHHHHHHHHHh-CCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCC
Confidence            4699999999999999999840 5889999987532100                                         


Q ss_pred             -----------------c--------CC-cchHHHHHHHHHhCCc--EEEeCceeeeccCCCC----CeEEEcC------
Q 046865          176 -----------------F--------IG-PKAGDKTLDWLISKKV--DVKLGQRVNLDSVSEG----SDTYLTS------  217 (369)
Q Consensus       176 -----------------~--------~~-~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~----~~~v~~~------  217 (369)
                                       .        .+ ..+.+.+.+.+++.|+  +++.+++++.++.+++    .+.+++.      
T Consensus       112 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~  191 (639)
T 2dkh_A          112 GQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAH  191 (639)
T ss_dssp             TSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGG
T ss_pred             CCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccC
Confidence                             0        00 1344567777888876  9999999998876542    4666554      


Q ss_pred             CC--cEEeccEEEEcCCCC
Q 046865          218 TG--DTIKADCHFLCTGKP  234 (369)
Q Consensus       218 ~g--~~i~~d~vi~a~G~~  234 (369)
                      +|  +++.+|.||.|.|..
T Consensus       192 ~G~~~~i~a~~vVgADG~~  210 (639)
T 2dkh_A          192 AGQIETVQARYVVGCDGAR  210 (639)
T ss_dssp             TTCEEEEEEEEEEECCCTT
T ss_pred             CCCeEEEEeCEEEECCCcc
Confidence            45  479999999999974

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.40  E-value=7.9e-05  Score=71.61  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=32.7

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCCc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF   47 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~   47 (369)
                      ..+|+||||||.||+.+|.+|+.+.+|+|+|+++..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhcCCcEEEEecCCCc
Confidence            468999999999999999999779999999998754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.38  E-value=0.00013  Score=73.62  Aligned_cols=40  Identities=38%  Similarity=0.639  Sum_probs=35.4

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~   50 (369)
                      ...++|+|||||++||+||+.|. +|++|+|+|+++.+|..
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~  316 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR  316 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCc
Confidence            45689999999999999999996 59999999999887754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.38  E-value=0.00033  Score=66.41  Aligned_cols=97  Identities=20%  Similarity=0.161  Sum_probs=64.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC---c----c---------------------------------c-cc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG---S----R---------------------------------L-LE  175 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~---~----~---------------------------------~-l~  175 (369)
                      -+++|||+|+.|+.+|..+++  .|.+|+++++.   +    .                                 + ++
T Consensus        10 ~DvvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~   87 (483)
T 3dgh_A           10 YDLIVIGGGSAGLACAKEAVL--NGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN   87 (483)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence            479999999999999999985  38999999831   1    0                                 0 00


Q ss_pred             -----cCCc-ch-----------HHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc-EEeccEEEEcCCCCCCc
Q 046865          176 -----FIGP-KA-----------GDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD-TIKADCHFLCTGKPVGS  237 (369)
Q Consensus       176 -----~~~~-~~-----------~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~d~vi~a~G~~p~~  237 (369)
                           ..+. .+           ...+...+++.+|+++.+... .+  +.+.+.+.+.+|+ ++.+|.+|+|||.+|..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~-~~--~~~~v~v~~~~g~~~~~~d~lviATGs~p~~  164 (483)
T 3dgh_A           88 VDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGS-FV--DSHTLLAKLKSGERTITAQTFVIAVGGRPRY  164 (483)
T ss_dssp             CCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEE-EE--ETTEEEEECTTCCEEEEEEEEEECCCEEECC
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Ec--cCCEEEEEeCCCeEEEEcCEEEEeCCCCcCC
Confidence                 0010 01           111223466789998877543 12  2345667777775 79999999999988765


Q ss_pred             h
Q 046865          238 D  238 (369)
Q Consensus       238 ~  238 (369)
                      +
T Consensus       165 p  165 (483)
T 3dgh_A          165 P  165 (483)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.38  E-value=0.00059  Score=64.46  Aligned_cols=54  Identities=19%  Similarity=0.081  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc-CCCcEEeccEEEEcCCCCCC
Q 046865          182 GDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT-STGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       182 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~-~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ...+.+.+++.||+++.++.+ ++..+++.+ .+.. .++.++.+|.||+|||..+.
T Consensus       122 ~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          122 FNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred             HHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence            455666667789999999999 886554433 2222 22335889999999998654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.36  E-value=0.00079  Score=64.51  Aligned_cols=36  Identities=36%  Similarity=0.626  Sum_probs=30.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhC----------CCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDF----------PEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~----------~~~~v~lv~~~~  171 (369)
                      ..+|+|||||+.|+-+|..|++..          .|.+|+|+++.+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            468999999999999999998621          589999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.31  E-value=9.2e-05  Score=73.88  Aligned_cols=87  Identities=21%  Similarity=0.192  Sum_probs=57.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------CC--cchHHHHHHHHHh------CCcEEEe
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IG--PKAGDKTLDWLIS------KKVDVKL  198 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------~~--~~~~~~~~~~l~~------~gv~i~~  198 (369)
                      .++++|||+|+.|+++|..|+++  +.+|+++++.+.+...         ..  ....+.+.+.++.      .++++..
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~--G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~  466 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALG  466 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECS
T ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEe
Confidence            46899999999999999999853  8999999998754211         10  1122233333332      2555544


Q ss_pred             CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ++.            ++++++.++.+|.||+|||..|.
T Consensus       467 ~~~------------v~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          467 QKP------------MTADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             CCC------------CCHHHHHTSCCSEEEECCCEEEC
T ss_pred             CeE------------EehhhccccCCCEEEEcCCCCcc
Confidence            332            22334456889999999999854

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.29  E-value=0.00016  Score=69.75  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ..+|+||||+|++|+.+|.+|+ .|.+|+|+|+++.
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            5699999999999999999996 5999999999864

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.20  E-value=0.0003  Score=68.02  Aligned_cols=35  Identities=26%  Similarity=0.478  Sum_probs=31.8

Q ss_pred             CCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~   45 (369)
                      ...||+||||||.||+.+|.+|+.  +.+|+|||+++
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            457999999999999999999973  79999999987

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.20  E-value=0.0046  Score=58.75  Aligned_cols=101  Identities=13%  Similarity=0.066  Sum_probs=67.6

Q ss_pred             eEEEEcCChhHHHHHHHHhhhC------------CCCeEEEEEcCccc-------ccc----------------------
Q 046865          138 SILIVGGGPTGVELAGEIAVDF------------PEKKVTLVHKGSRL-------LEF----------------------  176 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~------------~~~~v~lv~~~~~~-------l~~----------------------  176 (369)
                      .++|||+|++|+-+|..|.+..            .+....++++.+.+       ++.                      
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s  120 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT  120 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred             cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence            5999999999999998886531            12356677765432       110                      


Q ss_pred             --------------------CC--cchHHHHHHHHHhCCcEEEeCceeeeccCCCC--------CeEEEcCCC-----cE
Q 046865          177 --------------------IG--PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG--------SDTYLTSTG-----DT  221 (369)
Q Consensus       177 --------------------~~--~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--------~~~v~~~~g-----~~  221 (369)
                                          ++  .++.++++...++.+..+.++++|++++..+.        ...|++.++     ++
T Consensus       121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~  200 (501)
T 4b63_A          121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA  200 (501)
T ss_dssp             HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred             hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence                                00  14556666666777778999999998864221        245555433     36


Q ss_pred             EeccEEEEcCCCCCCch
Q 046865          222 IKADCHFLCTGKPVGSD  238 (369)
Q Consensus       222 i~~d~vi~a~G~~p~~~  238 (369)
                      +.++.||+|+|..|..+
T Consensus       201 ~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          201 RRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             EEEEEEEECCCCEECCC
T ss_pred             EEeCEEEECcCCCCCCC
Confidence            88999999999887654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.20  E-value=0.001  Score=64.84  Aligned_cols=99  Identities=17%  Similarity=0.116  Sum_probs=63.4

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC-cc-------cc---------c----------------------
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SR-------LL---------E----------------------  175 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~-~~-------~l---------~----------------------  175 (369)
                      ...+++|||+|+.|+.+|..+++  .+.+|+++++. +.       +.         |                      
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~--~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~  183 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAK--YGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGW  183 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccEEEECCCccHHHHHHHHHh--CCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCc
Confidence            34579999999999999999985  38999999962 21       10         0                      


Q ss_pred             cCCc--------chHHH-----------HHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCC
Q 046865          176 FIGP--------KAGDK-----------TLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKP  234 (369)
Q Consensus       176 ~~~~--------~~~~~-----------~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~  234 (369)
                      .+++        ++.+.           ....+++.+|+++.+.. ..+.  ...+.+.+.+|  +++.+|.+|+|||.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~~~--~~~v~v~~~~g~~~~~~~d~lviAtGs~  260 (598)
T 2x8g_A          184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKG-RLIS--PHEVQITDKNQKVSTITGNKIILATGER  260 (598)
T ss_dssp             CCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEE-EEEE--TTEEEEECTTCCEEEEEEEEEEECCCEE
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEcC--CCEEEEEeCCCCeEEEEeCEEEEeCCCC
Confidence            0011        11111           12235667898886642 2222  23455566667  469999999999988


Q ss_pred             CCch
Q 046865          235 VGSD  238 (369)
Q Consensus       235 p~~~  238 (369)
                      |..+
T Consensus       261 p~~p  264 (598)
T 2x8g_A          261 PKYP  264 (598)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            7643

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.11  E-value=0.00041  Score=67.35  Aligned_cols=37  Identities=32%  Similarity=0.468  Sum_probs=32.8

Q ss_pred             CCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCCc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~~   47 (369)
                      ...+|+||||+|++|+.+|.+|.+  +.+|+|||++...
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            457999999999999999999964  8999999998754

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.11  E-value=0.00037  Score=67.34  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             CcceEEEECCChHHHHHHHHccc-C-CcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g-~~V~lie~~~~   46 (369)
                      ..||+||||||.||+.+|.+|+. + .+|+|||+++.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            46999999999999999999974 4 79999999875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.11  E-value=0.00023  Score=69.94  Aligned_cols=36  Identities=28%  Similarity=0.550  Sum_probs=32.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cC--------CcEEEEcCCC-Cc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--------ADVTLIDPKE-YF   47 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g--------~~V~lie~~~-~~   47 (369)
                      ..++|+|||||++||+||+.|+ .|        ++|+|+|+++ .+
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            3579999999999999999996 46        8999999998 77

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.10  E-value=0.0017  Score=63.26  Aligned_cols=53  Identities=15%  Similarity=0.060  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhCC-cEEEeCceeeeccCCCCC---eEEE-cCCCc--EEeccEEEEcCCCC
Q 046865          182 GDKTLDWLISKK-VDVKLGQRVNLDSVSEGS---DTYL-TSTGD--TIKADCHFLCTGKP  234 (369)
Q Consensus       182 ~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~---~~v~-~~~g~--~i~~d~vi~a~G~~  234 (369)
                      ...+.+.+++.| |+++.++.+.++..+++.   +.+. +.+|+  ++.++.||+|+|..
T Consensus       137 ~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          137 LHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             HHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            344556666678 999999999988765542   2222 36676  68999999999963

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.89  E-value=0.0008  Score=64.13  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=32.8

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~   47 (369)
                      ...+|++|||+|++|+.+|.+|. .+.+|+|||++...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            45799999999999999999986 59999999998754

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.88  E-value=0.00048  Score=66.37  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=31.5

Q ss_pred             cceEEEECCChHHHHHHHHccc--CCcEEEEcCCCCc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~~   47 (369)
                      .||+||||||.||+.+|.+|+.  +.+|+|||+++..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999974  7999999998754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.87  E-value=0.00065  Score=64.72  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ..+|++|||+|++|+.+|.+|. .+.+|+|||++..+.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            4689999999999999999986 599999999987544

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.87  E-value=0.00093  Score=64.30  Aligned_cols=38  Identities=29%  Similarity=0.430  Sum_probs=33.1

Q ss_pred             CCCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCCc
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~~   47 (369)
                      ....+|+||||+|++|+.+|.+|.+  +.+|+|||+++..
T Consensus        10 ~~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           10 SDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             ccCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            3457999999999999999999964  7999999998754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.78  E-value=0.0012  Score=64.24  Aligned_cols=57  Identities=9%  Similarity=-0.118  Sum_probs=46.6

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCC--CCe-EEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GSD-TYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      .++.+.+.+.++..|.++++++.|.+|..++  +.+ .+.+.+|+++.||.||....+.|
T Consensus       378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp  437 (650)
T 1vg0_A          378 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLS  437 (650)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBC
T ss_pred             hHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcC
Confidence            4788999999999999999999999987655  433 44557799999999999776655

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.65  E-value=0.0048  Score=60.75  Aligned_cols=34  Identities=35%  Similarity=0.573  Sum_probs=27.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhh---CCCCeEEEEEcC
Q 046865          137 RSILIVGGGPTGVELAGEIAVD---FPEKKVTLVHKG  170 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~---~~~~~v~lv~~~  170 (369)
                      -.|+|||+|+.|+-+|..|++.   ..|.+|+++++.
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~   45 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   45 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence            3699999999999999999851   048899999875

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.43  E-value=0.0056  Score=58.71  Aligned_cols=47  Identities=15%  Similarity=-0.011  Sum_probs=32.8

Q ss_pred             HHHHh-CCcEEEeCceeeeccC-CCC------Ce-EEEc---CCCc--EEeccEEEEcCCC
Q 046865          187 DWLIS-KKVDVKLGQRVNLDSV-SEG------SD-TYLT---STGD--TIKADCHFLCTGK  233 (369)
Q Consensus       187 ~~l~~-~gv~i~~~~~v~~i~~-~~~------~~-~v~~---~~g~--~i~~d~vi~a~G~  233 (369)
                      +.+++ .||++++++.|.++.. +++      .+ .+..   .+|+  ++.++.||+|||-
T Consensus       146 ~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  206 (540)
T 1chu_A          146 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGG  206 (540)
T ss_dssp             HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCC
T ss_pred             HHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            34445 6899999999998865 323      32 2333   3565  7899999999985

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.32  E-value=0.021  Score=55.57  Aligned_cols=53  Identities=9%  Similarity=0.004  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEc---CCCc--EEeccEEEEcCCC
Q 046865          181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLT---STGD--TIKADCHFLCTGK  233 (369)
Q Consensus       181 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~--~i~~d~vi~a~G~  233 (369)
                      +...+.+.+++.||+|+.++.+.++..+++.+ .+..   .+|+  .+.++.||+|||-
T Consensus       157 l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  215 (621)
T 2h88_A          157 LLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGG  215 (621)
T ss_dssp             HHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            34455556667799999999998886554422 2322   4665  6899999999985

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.0043  Score=55.38  Aligned_cols=69  Identities=17%  Similarity=0.162  Sum_probs=50.1

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------C-CcchHHHHHHHHHhCCcEEEeCceee
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------I-GPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~-~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      ....|+|||+||.|+-.|..|+++..|.+|+++++.+.+...       + ...+...+.+.+++.|+++..+....
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~~~  140 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYV  140 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSSEE
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCcce
Confidence            345799999999999999999866679999999987654211       1 12233445666778899888775443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.17  E-value=0.0059  Score=47.09  Aligned_cols=36  Identities=19%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ...+.+|+|+|+|..|...|..|. .|++|+++|+++
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            344679999999999999999996 599999999975

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.98  E-value=0.026  Score=52.81  Aligned_cols=84  Identities=17%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..+++.|+|.|.+|+.+|..|.+  .|.+|+..+..+..        .....+.|++.|++++.+.......        
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~~~--------~~~~~~~L~~~gi~~~~g~~~~~~~--------   69 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKPFD--------ENPTAQSLLEEGIKVVCGSHPLELL--------   69 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSCGG--------GCHHHHHHHHTTCEEEESCCCGGGG--------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCccc--------CChHHHHHHhCCCEEEECCChHHhh--------
Confidence            46899999999999999888875  49999999876521        1123456788899998875422110        


Q ss_pred             EcCCCcEEeccEEEEcCCCCCCchhhcc
Q 046865          215 LTSTGDTIKADCHFLCTGKPVGSDWLKD  242 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~p~~~~l~~  242 (369)
                        . +   .+|.||+++|..++.+.+..
T Consensus        70 --~-~---~~d~vv~spgi~~~~p~~~~   91 (451)
T 3lk7_A           70 --D-E---DFCYMIKNPGIPYNNPMVKK   91 (451)
T ss_dssp             --G-S---CEEEEEECTTSCTTSHHHHH
T ss_pred             --c-C---CCCEEEECCcCCCCChhHHH
Confidence              0 1   27999999999887765543

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=95.88  E-value=0.029  Score=55.03  Aligned_cols=51  Identities=16%  Similarity=0.082  Sum_probs=35.7

Q ss_pred             HHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEE---cCCCc--EEeccEEEEcCCC
Q 046865          183 DKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYL---TSTGD--TIKADCHFLCTGK  233 (369)
Q Consensus       183 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~i~~d~vi~a~G~  233 (369)
                      ..+.+.+++.||+|+.++.|.++..+++.+ .+.   +.+|+  .+.++.||+|||-
T Consensus       162 ~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          162 FAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            444555666789999999998886544422 222   25665  5899999999985

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=95.84  E-value=0.012  Score=55.62  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=33.9

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~   50 (369)
                      +||+|||||++||+||+.|+ .|++|+|+|+++.+|..
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr   77 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR   77 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            79999999999999999997 59999999999988754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.80  E-value=0.0077  Score=51.45  Aligned_cols=43  Identities=23%  Similarity=0.051  Sum_probs=33.4

Q ss_pred             ceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 046865          260 NLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGER  306 (369)
Q Consensus       260 ~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~~  306 (369)
                      .+++ +.++||++||++..+   ....|+.+|+.||+.|+..|+++.
T Consensus       289 ~~~~-~~~~v~l~GDa~~g~---gv~~A~~sG~~aA~~I~~~L~~e~  331 (336)
T 3kkj_A          289 ALSD-ADLGIYVCGDWCLSG---RVEGAWLSGQEAARRLLEHLQLEH  331 (336)
T ss_dssp             SEEE-TTTTEEECCGGGTTS---SHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             ceee-CCCCEEEEecccCCc---CHHHHHHHHHHHHHHHHHHhhccC
Confidence            3444 578999999987654   357899999999999999887753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.61  E-value=0.011  Score=46.36  Aligned_cols=34  Identities=35%  Similarity=0.532  Sum_probs=30.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ...+|+|+|+|..|..+|..|. .|.+|+++|+++
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3578999999999999999986 589999999875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.54  E-value=0.044  Score=48.81  Aligned_cols=82  Identities=22%  Similarity=0.131  Sum_probs=58.8

Q ss_pred             cCCeEEEEcCChhHHH-HHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE
Q 046865          135 SARSILIVGGGPTGVE-LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT  213 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e-~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  213 (369)
                      ..+++.|+|.|.+|+. +|..|.+  .|.+|++.+..+.      +.    ..+.|++.|++++.+.....+.       
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~~------~~----~~~~L~~~gi~v~~g~~~~~l~-------   63 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKMY------PP----MSTQLEALGIDVYEGFDAAQLD-------   63 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSCC------TT----HHHHHHHTTCEEEESCCGGGGG-------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCCC------cH----HHHHHHhCCCEEECCCCHHHcC-------
Confidence            3578999999999997 7777764  4999999987653      11    3456778899998764322110       


Q ss_pred             EEcCCCcEEeccEEEEcCCCCCCchhhcc
Q 046865          214 YLTSTGDTIKADCHFLCTGKPVGSDWLKD  242 (369)
Q Consensus       214 v~~~~g~~i~~d~vi~a~G~~p~~~~l~~  242 (369)
                          .   -.+|.||.+.|..|+.+.+..
T Consensus        64 ----~---~~~d~vV~Spgi~~~~p~~~~   85 (326)
T 3eag_A           64 ----E---FKADVYVIGNVAKRGMDVVEA   85 (326)
T ss_dssp             ----S---CCCSEEEECTTCCTTCHHHHH
T ss_pred             ----C---CCCCEEEECCCcCCCCHHHHH
Confidence                0   147999999999988776544

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=95.53  E-value=0.054  Score=53.04  Aligned_cols=52  Identities=10%  Similarity=-0.080  Sum_probs=35.9

Q ss_pred             HHHHHHHHhC-Cc-EEEeCceeeeccCCCC---Ce-EEE---cCCCc--EEeccEEEEcCCCC
Q 046865          183 DKTLDWLISK-KV-DVKLGQRVNLDSVSEG---SD-TYL---TSTGD--TIKADCHFLCTGKP  234 (369)
Q Consensus       183 ~~~~~~l~~~-gv-~i~~~~~v~~i~~~~~---~~-~v~---~~~g~--~i~~d~vi~a~G~~  234 (369)
                      ..+.+.+++. || +++.++.+.++..+++   .+ .+.   ..+|+  .+.++.||+|||-.
T Consensus       155 ~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~  217 (643)
T 1jnr_A          155 PIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGA  217 (643)
T ss_dssp             HHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred             HHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcc
Confidence            3445555566 89 9999999988865544   32 222   35665  68999999999953

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.52  E-value=0.063  Score=44.75  Aligned_cols=77  Identities=18%  Similarity=0.262  Sum_probs=52.4

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..++++|||||.+|...+..|.+.  |.+|+++.+.          ....+.+..++.+++++....-.           
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~----------~~~~l~~l~~~~~i~~i~~~~~~-----------   86 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQE--GAAITVVAPT----------VSAEINEWEAKGQLRVKRKKVGE-----------   86 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGG--CCCEEEECSS----------CCHHHHHHHHTTSCEEECSCCCG-----------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCC----------CCHHHHHHHHcCCcEEEECCCCH-----------
Confidence            368999999999999999999854  8999999753          22345555556668776432110           


Q ss_pred             EcCCCcEEeccEEEEcCCCCCCch
Q 046865          215 LTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                          ..--.+|+||.|||......
T Consensus        87 ----~dL~~adLVIaAT~d~~~N~  106 (223)
T 3dfz_A           87 ----EDLLNVFFIVVATNDQAVNK  106 (223)
T ss_dssp             ----GGSSSCSEEEECCCCTHHHH
T ss_pred             ----hHhCCCCEEEECCCCHHHHH
Confidence                00113899999998765433

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.40  E-value=0.016  Score=45.35  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +.+|+|+|+|..|...|..|. .|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            568999999999999999986 599999999963

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.40  E-value=0.02  Score=53.67  Aligned_cols=41  Identities=17%  Similarity=0.477  Sum_probs=36.3

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      ...+||+|||+|.+|+++|..|+ .|++|+++|+++++|...
T Consensus        18 ~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~   59 (475)
T 3p1w_A           18 GEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGET   59 (475)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            45689999999999999999996 599999999999887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.26  E-value=0.017  Score=44.38  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +++|+|+|+|..|...|..|. .|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            468999999999999999986 599999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.22  E-value=0.015  Score=44.32  Aligned_cols=33  Identities=33%  Similarity=0.462  Sum_probs=28.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .++|+|+|+|..|...|..|. .|++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            368999999999999999986 589999999864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.11  E-value=0.04  Score=52.04  Aligned_cols=61  Identities=16%  Similarity=0.243  Sum_probs=46.6

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCC----------cc--------hHHHHHHHHHhCCcEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG----------PK--------AGDKTLDWLISKKVDV  196 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~----------~~--------~~~~~~~~l~~~gv~i  196 (369)
                      .+.+++|||+|++|+.+|..|.+.  |.+|+++++.+++.....          .+        ....+.+.+++.|+++
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~--g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~  109 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL  109 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCc
Confidence            367899999999999999999864  899999999877644210          01        1456778888889875


Q ss_pred             E
Q 046865          197 K  197 (369)
Q Consensus       197 ~  197 (369)
                      .
T Consensus       110 ~  110 (498)
T 2iid_A          110 N  110 (498)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.04  E-value=0.02  Score=42.21  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=28.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~   45 (369)
                      .++|+|+|+|..|..++..|. .| ++|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            468999999999999998885 57 8999999864

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=94.92  E-value=0.045  Score=50.09  Aligned_cols=57  Identities=19%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCC--cchHHHHHHHHHhCCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG--PKAGDKTLDWLISKKV  194 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~--~~~~~~~~~~l~~~gv  194 (369)
                      ..+|+|||+|+.|+.+|..|++  .|.+|+++++.+.......  -.+.....+.|++.|+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~   63 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGV   63 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCccccccccChhHHHHHHHcCC
Confidence            4689999999999999999985  4899999999876422211  1234455566776665

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.71  E-value=0.026  Score=52.13  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=30.5

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~   45 (369)
                      ..++|.|||.|+.|+..|..|++|++|+++|+++
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~G~~V~~~D~~~   68 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQNHEVVALDIVQ   68 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTSEEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHcCCeEEEEecCH
Confidence            4569999999999999999887799999999875

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=94.59  E-value=0.053  Score=49.76  Aligned_cols=37  Identities=11%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ...+|+|||||+.|+-+|..|++.  |.+|+++++.+.+
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~--G~~V~v~E~~~~~   58 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQS--GIDCDVYEAVKEI   58 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence            456899999999999999999854  8999999998754

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=94.48  E-value=0.017  Score=53.73  Aligned_cols=43  Identities=19%  Similarity=0.362  Sum_probs=37.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL   54 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~   54 (369)
                      ..+||+|||+|++|+++|..|+ .|++|+++|+++.+|..+...
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~   48 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI   48 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccccc
Confidence            4689999999999999999997 599999999999888654443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.47  E-value=0.038  Score=44.51  Aligned_cols=33  Identities=21%  Similarity=0.252  Sum_probs=29.7

Q ss_pred             cceEEEECCChHHHHHHHHcc-c-CCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~-g~~V~lie~~~   45 (369)
                      ..+|+|+|+|..|..+|..|. . |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            568999999999999999986 6 99999999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.41  E-value=0.035  Score=48.81  Aligned_cols=37  Identities=35%  Similarity=0.469  Sum_probs=30.6

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      |....++|.|||+|..|...|..|. .|++|+++|+++
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3344568999999999999998875 599999999875

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.37  E-value=0.027  Score=53.29  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      ++|+|||+|..|+-.|..|++.  |.+|+++++.+++.
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~--G~~V~VlEa~~~~G   37 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAA--GIPVLLLEQRDKPG   37 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT--TCCEEEECCC----
T ss_pred             CCEEEECCcHHHHHHHHHHHHC--CCcEEEEccCCCCC
Confidence            6899999999999999999864  99999999987763

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.28  E-value=0.047  Score=45.52  Aligned_cols=34  Identities=29%  Similarity=0.515  Sum_probs=29.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|+|||||..|...+..|. .|.+|+||+++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4679999999999999998875 599999999864

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=94.20  E-value=0.055  Score=50.73  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=34.3

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCCCccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEYFEITW   51 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~~~~~~~   51 (369)
                      ++||+|||||++||+||++|+ +|.  +|+|+|+++..|...
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~   43 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWI   43 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTC
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCce
Confidence            479999999999999999997 488  999999998877543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=94.13  E-value=0.083  Score=51.14  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      ..+|+|||||+.|+-+|..|++.  |.+|+++++.+.
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~--G~~V~LiEr~~~   57 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKL--GHDVTIYERSAF   57 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHcC--CCCEEEEcCCCC
Confidence            46899999999999999999853  899999998753

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=94.07  E-value=0.061  Score=51.62  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhC-CCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~-~~~~v~lv~~~~  171 (369)
                      ..+|+|||||+.|+-+|..|++.. .+.+|+|+++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            568999999999999999998644 689999999864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=94.06  E-value=0.058  Score=49.63  Aligned_cols=33  Identities=30%  Similarity=0.508  Sum_probs=29.6

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+|+|||||+.|+-+|..|++  .|.+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~--~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            479999999999999999985  489999999875

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=94.01  E-value=0.085  Score=49.94  Aligned_cols=58  Identities=24%  Similarity=0.387  Sum_probs=40.3

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv  194 (369)
                      ...+|+|||+|++|+-+|..|++  .|.+|+++++.+..... -...+.....+.|++.|+
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl   69 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRL--GGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGI   69 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCC
Confidence            34579999999999999999985  49999999998654321 111233444455555554

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.00  E-value=0.033  Score=48.01  Aligned_cols=34  Identities=35%  Similarity=0.583  Sum_probs=30.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|+|||||..|...+..|. .|.+|+||+++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4689999999999999998875 599999999854

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.90  E-value=0.04  Score=42.10  Aligned_cols=33  Identities=36%  Similarity=0.523  Sum_probs=28.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+|+|+|+|..|...|..|. .|.+|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357999999999999999986 589999999864

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=93.82  E-value=0.089  Score=49.82  Aligned_cols=58  Identities=22%  Similarity=0.390  Sum_probs=40.0

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-CCcchHHHHHHHHHhCCc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-~~~~~~~~~~~~l~~~gv  194 (369)
                      ...+|+|||+|++|+-+|..|++  .|.+|+++++.+..... -...+.....+.|++.|+
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl   68 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRL--AGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGI   68 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCC
Confidence            34679999999999999999985  49999999998654321 111233444455555554

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=93.68  E-value=0.076  Score=50.79  Aligned_cols=36  Identities=28%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhC-CCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~-~~~~v~lv~~~~  171 (369)
                      ..+|+|||||+.|+-+|..|++.+ .|.+|+++++.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            468999999999999999998633 589999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.68  E-value=0.21  Score=38.09  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL  215 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~  215 (369)
                      .++++|+|.|.+|..++..|.+  .+.+|+++++++        +.    .+.+++.|+.++.+..-. .+      .+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~--------~~----~~~~~~~g~~~i~gd~~~-~~------~l~   65 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSR--------TR----VDELRERGVRAVLGNAAN-EE------IMQ   65 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCH--------HH----HHHHHHTTCEEEESCTTS-HH------HHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCH--------HH----HHHHHHcCCCEEECCCCC-HH------HHH
Confidence            4689999999999999999985  388999999865        21    233455788776542110 00      000


Q ss_pred             cCCCcEEeccEEEEcCCCC
Q 046865          216 TSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       216 ~~~g~~i~~d~vi~a~G~~  234 (369)
                       .-+ .-.+|.+|++++..
T Consensus        66 -~a~-i~~ad~vi~~~~~~   82 (140)
T 3fwz_A           66 -LAH-LECAKWLILTIPNG   82 (140)
T ss_dssp             -HTT-GGGCSEEEECCSCH
T ss_pred             -hcC-cccCCEEEEECCCh
Confidence             011 12689999998764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.64  E-value=0.065  Score=47.79  Aligned_cols=37  Identities=27%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      |..++++|.|||+|..|.+.|..|. .|+ +|+|+|.++
T Consensus         5 ~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            5 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            3334579999999999999999886 576 899999875

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=93.55  E-value=0.1  Score=50.00  Aligned_cols=35  Identities=31%  Similarity=0.530  Sum_probs=30.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .+|+|||+|++|+-+|..|++  .|.+|+++++.+..
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~--~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAH--RQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            479999999999999999985  48999999998754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=93.46  E-value=0.063  Score=50.16  Aligned_cols=42  Identities=24%  Similarity=0.330  Sum_probs=37.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS   53 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~   53 (369)
                      ..+||||||||++||+||..|+ .|++|+|+|+++++|.....
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            4689999999999999999997 59999999999998865433

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.40  E-value=0.053  Score=45.10  Aligned_cols=32  Identities=25%  Similarity=0.462  Sum_probs=28.8

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|+|+|+|..|...|..|. .|++|+++|+++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            37999999999999999986 699999999865

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=93.40  E-value=0.12  Score=49.86  Aligned_cols=35  Identities=31%  Similarity=0.552  Sum_probs=30.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ..|+|||+|++|+-+|..|++  .|.+|+++++.+..
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~--~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRA--GGVGALVLEKLVEP   84 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHH--TTCCEEEEBSCSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCC
Confidence            479999999999999999985  38999999987654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=93.37  E-value=0.065  Score=48.49  Aligned_cols=39  Identities=28%  Similarity=0.458  Sum_probs=30.1

Q ss_pred             cccCCCcceEEEECCChHHHHHHHHcccCCcEEEEcCCC
Q 046865            7 QQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (369)
Q Consensus         7 ~~~~~~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~   45 (369)
                      ..+..++++|+|+|+|..|-.+|..|++..+|++.+++.
T Consensus        10 ~~~~g~~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~   48 (365)
T 3abi_A           10 HHIEGRHMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNN   48 (365)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCH
T ss_pred             ccccCCccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCH
Confidence            345567789999999999999999999889999998764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=93.36  E-value=0.13  Score=49.18  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=30.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .+|+|||||+.|+-+|..|++  .|.+|+++++.+..
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~--~G~~v~viEr~~~~   40 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLAR--QGVRVLVVERRPGL   40 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            479999999999999999985  48999999998754

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.34  E-value=0.072  Score=49.38  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ..+|+|||||+.|+-+|..|++  .|.+|+++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~--~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQ--HDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHH--TTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHH--CCCeEEEEcCCC
Confidence            4689999999999999999985  399999999875

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=93.23  E-value=0.28  Score=46.32  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             hcCCeEEEEcCChhHHH-HHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe
Q 046865          134 KSARSILIVGGGPTGVE-LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD  212 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e-~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~  212 (369)
                      ...+++.|+|-|-+|+- +|..|.+  .|.+|+..+..+.           ...+.|++.|++++.+.....+       
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~--~G~~V~~~D~~~~-----------~~~~~l~~~gi~~~~g~~~~~~-------   79 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLAN--EGYQISGSDLAPN-----------SVTQHLTALGAQIYFHHRPENV-------   79 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHH--TTCEEEEECSSCC-----------HHHHHHHHTTCEEESSCCGGGG-------
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHh--CCCeEEEEECCCC-----------HHHHHHHHCCCEEECCCCHHHc-------
Confidence            34689999999999996 7887774  4999999876531           2235688899999877432211       


Q ss_pred             EEEcCCCcEEeccEEEEcCCCCCCchhhc
Q 046865          213 TYLTSTGDTIKADCHFLCTGKPVGSDWLK  241 (369)
Q Consensus       213 ~v~~~~g~~i~~d~vi~a~G~~p~~~~l~  241 (369)
                               -.+|.||+++|..++.+.+.
T Consensus        80 ---------~~~d~vV~Spgi~~~~p~~~   99 (494)
T 4hv4_A           80 ---------LDASVVVVSTAISADNPEIV   99 (494)
T ss_dssp             ---------TTCSEEEECTTSCTTCHHHH
T ss_pred             ---------CCCCEEEECCCCCCCCHHHH
Confidence                     13789999999988766543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.17  E-value=0.074  Score=48.47  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ..+|+|||+|.+|+.+|..|+ .|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            579999999999999999886 5999999999753

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=93.17  E-value=0.066  Score=50.25  Aligned_cols=40  Identities=25%  Similarity=0.424  Sum_probs=33.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCCCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITW   51 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~~~~~~~   51 (369)
                      ..+||+|||||++|+++|+.|+ .|. +|+|+|+++.+|..+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~   44 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM   44 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCce
Confidence            3579999999999999999997 588 899999998877543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=93.12  E-value=0.22  Score=45.13  Aligned_cols=62  Identities=24%  Similarity=0.291  Sum_probs=46.2

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC-ccccccC--------------------------CcchHHHHHH
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRLLEFI--------------------------GPKAGDKTLD  187 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~-~~~l~~~--------------------------~~~~~~~~~~  187 (369)
                      ...+|+|||+|.+|+-+|..|.+.  |.+|+++++. +++....                          -+.....+.+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~--G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~  120 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRA--GHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLA  120 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHT--SCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC--CCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHH
Confidence            357899999999999999999853  8999999998 5542110                          0233567788


Q ss_pred             HHHhCCcEEEe
Q 046865          188 WLISKKVDVKL  198 (369)
Q Consensus       188 ~l~~~gv~i~~  198 (369)
                      .+++.|++...
T Consensus       121 ~~~~lGl~~~~  131 (376)
T 2e1m_A          121 LIDKLGLKRRL  131 (376)
T ss_dssp             HHHHTTCCEEE
T ss_pred             HHHHcCCCcce
Confidence            88899986543

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=93.01  E-value=0.1  Score=49.36  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      -.|+|||||++|+-+|..|++. .|.+|+++++++++.
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~-~G~~V~VlE~~~~~G   47 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQI-DGPSWMIVDSNETPG   47 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-CCSCEEEEESSSSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhh-CCCCEEEEECCCCCc
Confidence            4699999999999999999753 489999999987764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=92.99  E-value=0.083  Score=46.24  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++++|.|||.|..|...|..|. .|++|+++|+++
T Consensus        14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~   48 (296)
T 3qha_A           14 EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI   48 (296)
T ss_dssp             -CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3568999999999999999886 589999999875

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=92.97  E-value=0.073  Score=47.03  Aligned_cols=34  Identities=24%  Similarity=0.280  Sum_probs=28.7

Q ss_pred             cceEEEECCChHHHHHHHHc-ccCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l-~~g~~V~lie~~~~   46 (369)
                      ..+|.|||+|..|...|..+ ..|++|+|+|.++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35899999999999999765 47999999998753

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=92.93  E-value=0.1  Score=48.10  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ++|+|||+|..|+-.|..|+++  |.+|+++++.+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~--G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARN--GHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence            3799999999999999999864  8999999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.84  E-value=0.081  Score=47.79  Aligned_cols=34  Identities=29%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ...+|+|||+|..|+.+|..|+ .|.+|+++|+++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999886 499999999874

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=92.81  E-value=0.074  Score=50.45  Aligned_cols=35  Identities=43%  Similarity=0.658  Sum_probs=28.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhC-CCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~-~~~~v~lv~~~~  171 (369)
                      .+|+|||||+.|+-+|..|++.+ .|.+|+++++.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            47999999999999999998622 489999999865

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.71  E-value=0.09  Score=46.59  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +++|.|||+|.-|...|..|. .|.+|+++++++
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            368999999999999999986 589999999975

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.69  E-value=0.065  Score=49.85  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=29.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .++|.|||.|.+|+++|..|. +|++|++.|.++.
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            468999999999999998875 6999999998764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.65  E-value=0.11  Score=46.74  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=30.6

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      |....++|.|||+|.-|.+.|..|. .|++|+++++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3344579999999999999999886 589999999974

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=92.51  E-value=0.1  Score=48.66  Aligned_cols=34  Identities=38%  Similarity=0.475  Sum_probs=30.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|.|||.|.+|+++|..|. +|++|++.|.++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4579999999999999998886 699999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.48  E-value=0.11  Score=46.05  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=29.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~   45 (369)
                      +++|+|||+|..|...|..|. .|.  +|+++|+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            468999999999999999886 577  999999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.43  E-value=0.39  Score=36.49  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=47.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL  215 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~  215 (369)
                      .++++|+|+|.+|..++..|.+.  |.+|+++++.+        +    ..+.+++.++.++.+.. .     +.. .+.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~--------~----~~~~~~~~~~~~~~gd~-~-----~~~-~l~   64 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSK--------E----KIELLEDEGFDAVIADP-T-----DES-FYR   64 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCH--------H----HHHHHHHTTCEEEECCT-T-----CHH-HHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCH--------H----HHHHHHHCCCcEEECCC-C-----CHH-HHH
Confidence            46899999999999999999853  88999998754        2    12334456776654321 1     000 000


Q ss_pred             cCCCcEEeccEEEEcCCC
Q 046865          216 TSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       216 ~~~g~~i~~d~vi~a~G~  233 (369)
                      -. + .-.+|.+|++++.
T Consensus        65 ~~-~-~~~~d~vi~~~~~   80 (141)
T 3llv_A           65 SL-D-LEGVSAVLITGSD   80 (141)
T ss_dssp             HS-C-CTTCSEEEECCSC
T ss_pred             hC-C-cccCCEEEEecCC
Confidence            00 1 1258999999883

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=92.41  E-value=0.11  Score=47.88  Aligned_cols=36  Identities=19%  Similarity=0.391  Sum_probs=30.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ..+|+|||||+.|+.+|..++++  |.+|+++++.+.+
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~--G~~V~llEk~~~~   62 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKR--GRRVLVIDHARAP   62 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            35799999999999999999854  8999999998753

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=92.41  E-value=0.13  Score=47.38  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      +|+|||+|..|+-.|..|+++  |.+|+++++.+++
T Consensus         2 dVvVIGaGiaGLsaA~~La~~--G~~V~vlE~~~~~   35 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKA--GHEVEVFERLPIT   35 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhC--CCceEEEeCCCCC
Confidence            689999999999999999864  8999999998765

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.39  E-value=0.1  Score=47.06  Aligned_cols=34  Identities=35%  Similarity=0.500  Sum_probs=29.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      ...+|||+|||.||+.+|..|. .|. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4579999999999999998775 487 999999873

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=92.34  E-value=0.12  Score=46.23  Aligned_cols=34  Identities=18%  Similarity=0.383  Sum_probs=30.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      .+|+|||+|..|+-+|..|++  .|.+|+++++.+.
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~--~G~~V~vlE~~~~   38 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEG   38 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence            479999999999999999986  4899999999853

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.32  E-value=0.11  Score=45.92  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=28.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~   45 (369)
                      ++.+|+|||+|..|.+.|..|. .+.  +++|+|.++
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3579999999999999999886 455  899999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=92.08  E-value=0.14  Score=46.55  Aligned_cols=34  Identities=26%  Similarity=0.552  Sum_probs=29.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      -+|+|||+|++|+-+|..|+++  |.+|+++++.+.
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~--G~~V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAER--GHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence            3799999999999999999864  899999998754

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=92.06  E-value=0.053  Score=51.91  Aligned_cols=48  Identities=10%  Similarity=0.081  Sum_probs=39.5

Q ss_pred             EEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          255 LMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       255 i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      |..|++||+.+.+++|++||.++...  ....|..+|..+|+.|+..+.+
T Consensus       497 i~~~~~~~~~~~~gly~~GegaG~a~--gi~~Aa~~G~~~a~~i~~~~~~  544 (549)
T 3nlc_A          497 IKRGKDFQSVNLKGFYPAGEGAGYAG--GILSAGIDGIKVAEAVARDIVA  544 (549)
T ss_dssp             CCCTTTTSCTTCBTEEECHHHHTSCC--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCceECCcCCEEEccccCChhh--HHHHHHHHHHHHHHHHHHHhhh
Confidence            67889999878999999999998654  3456778999999999887754

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=92.06  E-value=0.13  Score=47.40  Aligned_cols=34  Identities=38%  Similarity=0.669  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      +|+|||+|..|+-.|..|++.  |.+|+++++.+++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~--G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNA--GKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCCc
Confidence            689999999999999999864  8999999987654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.06  E-value=0.1  Score=46.00  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=28.3

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +++|.|||+|.-|.+.|..|. .|.+|+++++++
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            368999999999999999886 589999999975

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=92.05  E-value=0.14  Score=45.52  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHhh-hCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAV-DFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~-~~~~~~v~lv~~~~~  172 (369)
                      +|+|||+|++|+-+|..|++ ...|.+|+++++++.
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            69999999999999999984 115899999998754

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=92.05  E-value=0.27  Score=45.56  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=43.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC------------C----cchHHHHHHHHHhCCcEEEe
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI------------G----PKAGDKTLDWLISKKVDVKL  198 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~------------~----~~~~~~~~~~l~~~gv~i~~  198 (369)
                      .+++|||+|..|+-+|..|.+.  +.+|+++++.+++....            .    ......+.+.+++.|++...
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~   81 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKA--GLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFE   81 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCcEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCcccc
Confidence            4799999999999999999853  88999999987653211            0    01145667778888887643

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=91.98  E-value=0.12  Score=46.53  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             cceEEEECCChHHHHHHHHccc-CCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~   46 (369)
                      +++|+|||||.-|..+++.+++ |++|+++|+++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3689999999999999998874 999999998753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=91.87  E-value=0.14  Score=46.24  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=29.6

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+|+|||+|.+|+-+|..|++  .|.+|+++++.+
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~--~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCC
Confidence            579999999999999999986  389999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=91.85  E-value=0.45  Score=36.37  Aligned_cols=35  Identities=31%  Similarity=0.463  Sum_probs=29.2

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ..++++|+|+|.+|..++..|..  .+.+|+++.|.+
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~--~g~~v~v~~r~~   54 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSY--PQYKVTVAGRNI   54 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCT--TTCEEEEEESCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCH
Confidence            48899999999999999988874  477788888764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.78  E-value=0.17  Score=43.94  Aligned_cols=33  Identities=33%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .++|.|||+|.-|...|..|+ .|++|+++|+++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            468999999999999998875 699999999875

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=91.72  E-value=0.16  Score=44.89  Aligned_cols=33  Identities=33%  Similarity=0.482  Sum_probs=28.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      +++|.|||+|..|.+.|..|. .|+ +|+|+|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            468999999999999998875 577 999999875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=91.68  E-value=0.17  Score=44.67  Aligned_cols=34  Identities=41%  Similarity=0.478  Sum_probs=29.6

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPK   44 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~   44 (369)
                      ....+|.|||+|..|.+.|..|. .++ +|+|+|.+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            34578999999999999998875 578 99999986

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=91.67  E-value=0.13  Score=39.45  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=28.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+|+|||+|..|...+..|. .|.+|+++++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            579999999999999999886 588899999864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.60  E-value=0.15  Score=44.84  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ...++|.|||.|..|...|..|. .|++|+++|+++
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34579999999999999999886 589999999875

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.58  E-value=0.15  Score=46.03  Aligned_cols=33  Identities=36%  Similarity=0.470  Sum_probs=29.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPK   44 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~   44 (369)
                      ...+|||+|+|.+|..+|+.|. .|. +|+++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4679999999999999999875 477 89999997

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.57  E-value=0.33  Score=37.71  Aligned_cols=39  Identities=26%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             HHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       132 ~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      ......+++|+|+|.+|..++..|..  .+.+|+++++.+.
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~~   53 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNEY   53 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGG
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHH
Confidence            34556899999999999999999975  3789999988753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=91.53  E-value=0.18  Score=45.07  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhC----CCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDF----PEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~----~~~~v~lv~~~~  171 (369)
                      +|+|||+|.+|+-+|..|+++.    ++.+|+++++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6899999999999999998752    348999999874

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=91.52  E-value=0.12  Score=46.49  Aligned_cols=33  Identities=15%  Similarity=0.235  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      +|+|||+|.+|+.+|..|+++  |.+|+++++.+.
T Consensus         4 dvvIIG~Gi~Gl~~A~~La~~--G~~V~vle~~~~   36 (372)
T 2uzz_A            4 DLIIIGSGSVGAAAGYYATRA--GLNVLMTDAHMP   36 (372)
T ss_dssp             EEEESCTTHHHHHHHHHHHHT--TCCEEEECSSCS
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence            699999999999999999864  899999998753

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=91.51  E-value=0.27  Score=46.63  Aligned_cols=33  Identities=30%  Similarity=0.645  Sum_probs=29.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+|+|||||+.|+-+|..|++  .|.+|+++++.+
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~--~G~~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAM--RGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHh--CCCCEEEEccCC
Confidence            479999999999999999984  489999999986

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.51  E-value=0.16  Score=44.65  Aligned_cols=33  Identities=33%  Similarity=0.573  Sum_probs=29.4

Q ss_pred             cceEEEECCChHHHHHHHHcccCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~   45 (369)
                      +++|.|||+|.-|...|..|..|.+|+++++++
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~~g~~V~~~~r~~   34 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLSLYHDVTVVTRRQ   34 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHhcCCceEEEECCH
Confidence            468999999999999998877789999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.49  E-value=0.14  Score=47.65  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=29.2

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|.|||+|+.|+..|..|. .|++|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            58999999999999999886 589999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=91.47  E-value=0.17  Score=45.88  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=29.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      -+|+|||+|.+|+-+|..|+++  |.+|+++++.+
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~--G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCC
Confidence            3699999999999999999864  89999999865

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.44  E-value=0.17  Score=44.54  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=29.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|.|||+|..|...|..|. .|++|+++++++
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3478999999999999998885 589999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=91.41  E-value=0.13  Score=47.82  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhC----CCCeEEEEEcCcccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDF----PEKKVTLVHKGSRLL  174 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~----~~~~v~lv~~~~~~l  174 (369)
                      .+|+|||||.+|+-.|..|.+..    ++.+|+++++.+++.
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~G   47 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVG   47 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCC
Confidence            57999999999999999998752    238999999987653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.41  E-value=0.19  Score=46.45  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+.+|.|||.|+.||..|..++ .|++|+.+|-++
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            45679999999999999998886 699999999875

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=91.39  E-value=0.17  Score=45.67  Aligned_cols=36  Identities=14%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ..++|+|||+|.+|+-+|..|+ +  |.+|+++++.+.+
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~--G~~V~vlE~~~~~   43 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-A--HGRVVVLEREAQP   43 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-T--TSCEEEECSSSST
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-C--CCCEEEEECCCCc
Confidence            3578999999999999999998 3  8999999998644

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=91.34  E-value=0.87  Score=40.13  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=28.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~  170 (369)
                      .++.|+|+|.+|.-+|..|.+.  +.+|+++.|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT--GHCVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT--TCEEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCC
Confidence            5799999999999999999853  7899999875

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=91.33  E-value=0.21  Score=44.82  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~  170 (369)
                      ..+|+|||+|.+|+-+|..|+++  +.+|+++++.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~--G~~V~vle~~   38 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARK--GYSVHILARD   38 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCEEEEEecc
Confidence            35799999999999999999853  8999999975

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.29  E-value=0.82  Score=35.24  Aligned_cols=80  Identities=10%  Similarity=0.131  Sum_probs=49.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL  215 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~  215 (369)
                      .++++|+|+|.+|..++..|.+  .+.+|+++++.+.       +..+.+.+. ...|++++.+.... .+      .+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~--~g~~V~vid~~~~-------~~~~~~~~~-~~~~~~~i~gd~~~-~~------~l~   65 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQ--RGQNVTVISNLPE-------DDIKQLEQR-LGDNADVIPGDSND-SS------VLK   65 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCH-------HHHHHHHHH-HCTTCEEEESCTTS-HH------HHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCh-------HHHHHHHHh-hcCCCeEEEcCCCC-HH------HHH
Confidence            4689999999999999999985  3889999987531       222233332 34577776653110 00      000


Q ss_pred             cCCCcEEeccEEEEcCCCC
Q 046865          216 TSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       216 ~~~g~~i~~d~vi~a~G~~  234 (369)
                       ..+ .-.+|.||++++..
T Consensus        66 -~a~-i~~ad~vi~~~~~d   82 (153)
T 1id1_A           66 -KAG-IDRCRAILALSDND   82 (153)
T ss_dssp             -HHT-TTTCSEEEECSSCH
T ss_pred             -HcC-hhhCCEEEEecCCh
Confidence             001 12579999998764

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.28  E-value=0.2  Score=44.34  Aligned_cols=33  Identities=27%  Similarity=0.527  Sum_probs=28.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      .++|.|||+|..|...|..|. +|+ +|+|+|.++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            468999999999999998875 566 899999865

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.27  E-value=0.19  Score=47.02  Aligned_cols=34  Identities=32%  Similarity=0.590  Sum_probs=31.1

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~   45 (369)
                      ..++|+|+|||-.|..+|..|.++++|.+||++.
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~  267 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNL  267 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCH
T ss_pred             cccEEEEEcchHHHHHHHHHhhhcCceEEEecCH
Confidence            3579999999999999999999889999999975

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.22  E-value=0.16  Score=47.23  Aligned_cols=79  Identities=16%  Similarity=0.108  Sum_probs=54.2

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..+++.|+|.|.+|+..|..|.+  .|.+|+..+..+.. +.   .      ..|+ .|+++..+....+.         
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~--~G~~v~~~D~~~~~-~~---~------~~l~-~G~~~~~g~~~~~~---------   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMTP-PG---L------DKLP-EAVERHTGSLNDEW---------   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHT--TTCCCEEEESSSSC-TT---G------GGSC-TTSCEEESSCCHHH---------
T ss_pred             CCCEEEEEeecHHHHHHHHHHHh--CCCEEEEEECCCCc-ch---h------HHhh-CCCEEEECCCcHHH---------
Confidence            35789999999999999988874  59999999876532 10   1      3355 78888766421100         


Q ss_pred             EcCCCcEEeccEEEEcCCCCCCchhhc
Q 046865          215 LTSTGDTIKADCHFLCTGKPVGSDWLK  241 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~p~~~~l~  241 (369)
                       +    . .+|.||+++|..|..+.+.
T Consensus        62 -~----~-~~d~vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A           62 -L----M-AADLIVASPGIALAHPSLS   82 (439)
T ss_dssp             -H----H-TCSEEEECTTSCTTCHHHH
T ss_pred             -h----c-cCCEEEeCCCCCCCCHHHH
Confidence             0    1 3689999999887665443

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.18  E-value=0.16  Score=44.57  Aligned_cols=32  Identities=34%  Similarity=0.465  Sum_probs=28.7

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|.|||+|..|...|..|. .|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            58999999999999999886 589999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.17  E-value=0.16  Score=46.50  Aligned_cols=33  Identities=33%  Similarity=0.470  Sum_probs=29.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+|+|||+|.+|+.++..|+ .|.+|+++|+++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            568999999999999998886 589999999875

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=91.17  E-value=0.17  Score=45.66  Aligned_cols=33  Identities=36%  Similarity=0.626  Sum_probs=29.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+|+|||+|.+|+.+|..|+++  +.+|+++++..
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~--G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKR--GEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            4799999999999999999864  88999999873

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.15  E-value=0.2  Score=44.18  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~   45 (369)
                      +.++|.|||.|..|.+.|..|. .|+  +|+++|+++
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            3478999999999999999886 588  999999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=91.14  E-value=0.14  Score=44.80  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=28.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +++|.|||+|.-|...|..|. .|.+|++++|++
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            368999999999999999886 589999999874

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.14  E-value=0.2  Score=44.45  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=29.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~   45 (369)
                      ....+|.|||+|..|.++|..|. .+.  +++|+|.++
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            34578999999999999999885 465  899999854

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=91.13  E-value=0.19  Score=45.72  Aligned_cols=33  Identities=33%  Similarity=0.467  Sum_probs=29.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhh-hCCC-CeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAV-DFPE-KKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~-~~~~-~~v~lv~~~~  171 (369)
                      .+|+|||+|.+|+.+|..|++ +  + .+|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~--G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNH--GITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHH--CCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhc--CCCcEEEEeCCC
Confidence            479999999999999999986 5  7 8999999875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=91.09  E-value=0.16  Score=45.80  Aligned_cols=31  Identities=29%  Similarity=0.421  Sum_probs=28.0

Q ss_pred             eEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +|.|||+|..|...|..|. .|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            8999999999999999886 589999999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.06  E-value=0.21  Score=44.39  Aligned_cols=33  Identities=36%  Similarity=0.488  Sum_probs=28.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      +++|.|||+|..|.+.|..|. .|+ +|+|+|.++
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            368999999999999998876 577 899999875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.04  E-value=0.17  Score=44.54  Aligned_cols=33  Identities=30%  Similarity=0.417  Sum_probs=28.5

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~   46 (369)
                      ++|.|||+|..|.+.|..|..   +.+|+++|+++.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            379999999999999988863   789999999753

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=90.94  E-value=0.19  Score=47.68  Aligned_cols=39  Identities=18%  Similarity=0.087  Sum_probs=33.4

Q ss_pred             EEEeCceeeeccCC-CCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          195 DVKLGQRVNLDSVS-EGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       195 ~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      +|+++++|++|+.+ ++.+.|++.+|+++++|.||+|++.
T Consensus       216 ~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~  255 (516)
T 1rsg_A          216 WLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQ  255 (516)
T ss_dssp             GEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCH
T ss_pred             EEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCH
Confidence            58999999999865 4568888889988999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=90.89  E-value=0.24  Score=46.48  Aligned_cols=38  Identities=32%  Similarity=0.489  Sum_probs=32.4

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      ...+|+|||+|..|+-+|..|.+  .|.+|+++++.+++.
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~--~g~~v~v~E~~~~~G   47 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQK--AGYKVTVLEARTRPG   47 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCC
Confidence            35689999999999999999985  388999999887643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.87  E-value=0.2  Score=45.65  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ...+|+|+|+|.+|+.++..++ .|.+|+++|+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999998886 588999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.85  E-value=0.18  Score=47.40  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      -.++|.|||.|+.|+..|..|+ .|++|+++|+++
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999886 599999999864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.83  E-value=0.12  Score=45.64  Aligned_cols=35  Identities=23%  Similarity=0.196  Sum_probs=30.3

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~   45 (369)
                      .+.++|.|||.|..|...|..|. .| ++|+++|+++
T Consensus        22 ~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           22 SMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             TSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            34578999999999999999886 58 9999999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=90.83  E-value=0.16  Score=49.77  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=30.0

Q ss_pred             cceEEEECCChHHHHHHHHccc-------CCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-------g~~V~lie~~~   45 (369)
                      .+||||||||.|||+||+.|++       |.+|+||||..
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~   61 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS   61 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence            5899999999999999999863       89999999964

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.80  E-value=0.2  Score=46.09  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +.+|+|+|.|..|...|..|. .|.+|++||+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            468999999999999999996 5999999999753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=90.76  E-value=0.22  Score=41.06  Aligned_cols=34  Identities=18%  Similarity=0.426  Sum_probs=28.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|.|||+|..|.+.|..|. .|.+|+++++++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3568999999999999999886 589999999865

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=90.64  E-value=0.21  Score=47.35  Aligned_cols=61  Identities=15%  Similarity=0.164  Sum_probs=45.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC---------C--------cchHHHHHHHHHhCCcEEEe
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI---------G--------PKAGDKTLDWLISKKVDVKL  198 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~---------~--------~~~~~~~~~~l~~~gv~i~~  198 (369)
                      ..+++|||+|..|+-.|..|++.  |.+|+++++.+++....         .        ......+.+.+++.|++...
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~   81 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYK   81 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHT--TCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCccee
Confidence            35799999999999999999863  88999999987663210         0        01135677788888987654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=90.60  E-value=0.22  Score=45.69  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=28.2

Q ss_pred             eEEEECCChHHHHHHHHcccCCcEEEEcCCC
Q 046865           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~   45 (369)
                      +|.|||+|..|+..|..|.+|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhCCCEEEEEECCH
Confidence            7999999999999999886699999999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=90.51  E-value=0.21  Score=43.21  Aligned_cols=31  Identities=23%  Similarity=0.235  Sum_probs=28.0

Q ss_pred             eEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +|.|||+|..|...|..|. .|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            6999999999999999886 589999999875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.47  E-value=0.16  Score=42.53  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=28.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .+.+++|+|+|..|...|..|. .|+ |+++|+++
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            4578999999999999999996 478 99999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=90.46  E-value=0.24  Score=43.56  Aligned_cols=32  Identities=38%  Similarity=0.566  Sum_probs=27.7

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      ++|.|||+|..|...|..|. .|. +|+|+|.++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            68999999999999998875 465 899999865

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=90.42  E-value=0.23  Score=43.60  Aligned_cols=33  Identities=24%  Similarity=0.451  Sum_probs=27.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~   45 (369)
                      ..+|.|||+|..|...|..|. ++.  +++|+|.++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            478999999999999998775 577  999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.38  E-value=0.23  Score=43.57  Aligned_cols=32  Identities=34%  Similarity=0.504  Sum_probs=27.9

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~   45 (369)
                      ++|.|||+|..|.+.|..|. .|+  +|+|+|.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            37999999999999998886 577  999999864

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=90.38  E-value=0.18  Score=47.16  Aligned_cols=38  Identities=29%  Similarity=0.474  Sum_probs=33.8

Q ss_pred             cceEEEECCChHHHHHHHHccc-C--CcEEEEcCCCCcccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEIT   50 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g--~~V~lie~~~~~~~~   50 (369)
                      ++||+|||||++|+++|++|++ |  .+|+|+|+++..|..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~   44 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGK   44 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTT
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCce
Confidence            5899999999999999999974 7  999999998887643

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=90.36  E-value=0.82  Score=43.43  Aligned_cols=83  Identities=17%  Similarity=-0.010  Sum_probs=56.7

Q ss_pred             HHhcCCeEEEEcCChhHHHH-HHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCC
Q 046865          132 KIKSARSILIVGGGPTGVEL-AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG  210 (369)
Q Consensus       132 ~~~~~~~v~vvG~G~~g~e~-a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  210 (369)
                      .....+++.++|-|-+|+-. |..|.+  .|.+|+..+....      +.    ..+.|++.|++++.+.....+.    
T Consensus        15 ~~~~~~~i~~iGiGg~Gms~lA~~l~~--~G~~V~~sD~~~~------~~----~~~~L~~~gi~~~~G~~~~~~~----   78 (524)
T 3hn7_A           15 LYFQGMHIHILGICGTFMGSLALLARA--LGHTVTGSDANIY------PP----MSTQLEQAGVTIEEGYLIAHLQ----   78 (524)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESCCC------TT----HHHHHHHTTCEEEESCCGGGGC----
T ss_pred             eeecCCEEEEEEecHhhHHHHHHHHHh--CCCEEEEECCCCC------cH----HHHHHHHCCCEEECCCCHHHcC----
Confidence            34567999999999999974 655553  4999999987642      11    3456778899998774322110    


Q ss_pred             CeEEEcCCCcEEeccEEEEcCCCCCCchhhc
Q 046865          211 SDTYLTSTGDTIKADCHFLCTGKPVGSDWLK  241 (369)
Q Consensus       211 ~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~  241 (369)
                                 -.+|.||.+.|..|+.+.+.
T Consensus        79 -----------~~~d~vV~Spgi~~~~p~l~   98 (524)
T 3hn7_A           79 -----------PAPDLVVVGNAMKRGMDVIE   98 (524)
T ss_dssp             -----------SCCSEEEECTTCCTTSHHHH
T ss_pred             -----------CCCCEEEECCCcCCCCHHHH
Confidence                       13789999999988776654

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=90.36  E-value=0.33  Score=44.17  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=31.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      .+++|||+|.+|+-+|..|.+  .+.+|+++++.+++.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEEecCCcC
Confidence            479999999999999999985  389999999987654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=90.19  E-value=0.26  Score=43.71  Aligned_cols=34  Identities=26%  Similarity=0.190  Sum_probs=28.6

Q ss_pred             cceEEEECCChHHHH-HHHHc-ccCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSL-VAKSL-QFSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~-aA~~l-~~g~~V~lie~~~~   46 (369)
                      .++|.|||.|.+|++ +|..| ++|++|++.|+++.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            468999999999997 66666 47999999998753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=90.16  E-value=0.28  Score=45.21  Aligned_cols=36  Identities=22%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ....++|+|||+|.-|...+..++ .|++|+++|+++
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            345679999999999999999887 499999999764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.11  E-value=0.25  Score=43.97  Aligned_cols=32  Identities=16%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~   44 (369)
                      .++|.|||+|..|...|..|. .|.+|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            368999999999999999886 58999999985

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=90.10  E-value=0.31  Score=44.33  Aligned_cols=33  Identities=36%  Similarity=0.514  Sum_probs=30.2

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +||+|||||+||+.||..|+ .|.+|+|||+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            79999999999999999986 5999999998763

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=90.09  E-value=0.25  Score=45.87  Aligned_cols=35  Identities=34%  Similarity=0.664  Sum_probs=30.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .+|+|||+|+.|+.+|..+++.  +.+|+++++.+.+
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~--G~~V~llEk~~~~   61 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKL   61 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHC--CCCEEEEECCCCC
Confidence            5799999999999999999853  8999999987643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.08  E-value=0.23  Score=42.25  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=28.8

Q ss_pred             cceEEEECCChHHHHHHHHccc-CC-cEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g~-~V~lie~~~   45 (369)
                      ..+|+|||+|-.|..+|..|.+ |. +++|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            5689999999999999999864 86 899999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=90.07  E-value=0.23  Score=44.47  Aligned_cols=33  Identities=27%  Similarity=0.249  Sum_probs=29.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +++|.|||+|..|...|..|. .|++|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            368999999999999998886 589999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=90.04  E-value=0.29  Score=43.30  Aligned_cols=33  Identities=30%  Similarity=0.481  Sum_probs=28.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      ..+|.|||+|..|.+.|..|. .++ +|+|+|.++
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            568999999999999998875 566 999999875

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.01  E-value=0.27  Score=46.02  Aligned_cols=35  Identities=20%  Similarity=0.133  Sum_probs=30.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-c-CC-cEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SA-DVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~-g~-~V~lie~~~~   46 (369)
                      ..++|.|||+|+.|+..|..|+ . |+ +|+++|+++.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            3468999999999999998875 6 89 9999999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=89.97  E-value=0.29  Score=45.22  Aligned_cols=34  Identities=32%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCcc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSR  172 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~  172 (369)
                      .+|+|||+|..|+-+|..|+++  |. +|+++++.+.
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~--G~~~V~vlE~~~~   41 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARR--GYTNVTVLDPYPV   41 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCCcEEEEeCCCC
Confidence            5799999999999999999864  77 9999998764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=89.87  E-value=1.2  Score=33.25  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=28.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+++|+|+|.+|..++..|.+  .+.+|+++++.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            579999999999999999985  378999998754

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=89.84  E-value=0.31  Score=44.56  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      ..+++|||+|++|+-+|..|++.  +.+|+++++.+++.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASS--GQRVLIVDRRPHIG   65 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHC--CCceEEEeccCCCC
Confidence            34799999999999999999853  89999999887653

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=89.82  E-value=0.32  Score=44.09  Aligned_cols=36  Identities=33%  Similarity=0.507  Sum_probs=31.1

Q ss_pred             CCcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~   46 (369)
                      ...++|.|||+|.-|..++..+++ |++|+++|+.+.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            346799999999999999999874 999999998653

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=89.81  E-value=0.39  Score=44.04  Aligned_cols=39  Identities=26%  Similarity=0.406  Sum_probs=34.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCCCcccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEYFEIT   50 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~~~~~~   50 (369)
                      +++||+|||||++||+||+.|+ .| .+|+|+|+++.+|..
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~   45 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGK   45 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCc
Confidence            4689999999999999999997 58 899999999988754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.77  E-value=0.29  Score=42.19  Aligned_cols=33  Identities=9%  Similarity=0.184  Sum_probs=29.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +++|+|.|+|+.|...+..|. +|++|+++.+++
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            478999999999999999885 699999999864

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=89.76  E-value=0.24  Score=46.31  Aligned_cols=52  Identities=13%  Similarity=0.035  Sum_probs=39.5

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc---CCCcEEeccEEEEcCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT---STGDTIKADCHFLCTGKP  234 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~d~vi~a~G~~  234 (369)
                      .+.+.+.+.+   |++|+++++|++|+.+++.+.|++   .+|+++.+|.||+|++..
T Consensus       239 ~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~  293 (478)
T 2ivd_A          239 VLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  293 (478)
T ss_dssp             HHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHH
Confidence            4555555544   679999999999987766777877   677789999999999753

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=89.75  E-value=0.26  Score=43.89  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=29.6

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+.++|.|||+|..|...|..|. .|++|+++++++
T Consensus        11 ~~~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           11 HHMEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cccCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            345789999999999999999885 589999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.74  E-value=0.26  Score=44.40  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=29.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+|+|+|+|.+|..++..|+ .|.+|+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            379999999999999999886 588999999864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=89.64  E-value=0.34  Score=47.71  Aligned_cols=35  Identities=26%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .+|+|||||..|+-+|..|++  .|.+|+++++.+.+
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~  307 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLR--RGWQVTLYCADEAP  307 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCcc
Confidence            589999999999999999985  48999999986433

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=89.57  E-value=0.28  Score=42.96  Aligned_cols=34  Identities=21%  Similarity=0.095  Sum_probs=29.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++++|.|||.|..|...|..|. .|++|+++|+++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3468999999999999999886 599999999875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.39  E-value=0.23  Score=43.64  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=28.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-c-----C-CcEEEEcC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-F-----S-ADVTLIDP   43 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~-----g-~~V~lie~   43 (369)
                      .++++|.|||+|..|...|..|. .     | ++|+++++
T Consensus         6 ~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            6 QQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            34468999999999999998885 5     7 89999998

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=89.25  E-value=0.36  Score=47.63  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .+|+|||||..|+-+|..|++  .|.+|+++++.+.+
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~  299 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQR--RGAVVTLYCADAQP  299 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSST
T ss_pred             CCEEEECCcHHHHHHHHHHHH--CCCcEEEEeCCCcc
Confidence            579999999999999999985  48999999986533

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=89.21  E-value=0.31  Score=46.09  Aligned_cols=33  Identities=21%  Similarity=0.490  Sum_probs=29.4

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      -+|+|||||.+|+-+|..|+++  |.+|+++++.+
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~--G~~V~llE~~~   36 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGR--GLSVLMLEAQD   36 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhC--CCCEEEEECCC
Confidence            4699999999999999999864  89999999864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=89.21  E-value=0.31  Score=40.70  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             CcceEEEECC-ChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +.++|+|.|| |.-|...+..|. +|++|++++|++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            4678999998 999999999875 699999999864

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=89.17  E-value=0.42  Score=45.02  Aligned_cols=36  Identities=19%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ..+++|||+|..|+-+|..|.+  .|.+|+++++.+++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~   48 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKA   48 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCC
Confidence            5689999999999999999985  48999999998765

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=89.14  E-value=0.36  Score=44.08  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=32.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      ..+++|||+|..|+-+|..|++. +|.+|+++++++++.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~-~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQ-LDKRVLVLERRPHIG   44 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHH-SCCCEEEECSSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCC
Confidence            35799999999999999999864 478999999887653

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=89.13  E-value=0.39  Score=43.33  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      +++|||+|..|+-+|..|++.  +.+|+++++.+++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCC
Confidence            689999999999999999864  8899999988654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=88.92  E-value=0.26  Score=45.99  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|+|||||..|...+..|. .|.+|++++++.
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            3578999999999999998875 699999999863

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=88.89  E-value=0.42  Score=42.22  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=28.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      ..+|.|||+|..|.+.|..|. .+. +++|+|.++
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            468999999999999998875 455 999999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.74  E-value=0.34  Score=43.79  Aligned_cols=33  Identities=36%  Similarity=0.588  Sum_probs=29.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+|+|+|+|..|..+|..|+ .|.+|+++|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            478999999999999999886 599999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.69  E-value=0.68  Score=36.93  Aligned_cols=77  Identities=17%  Similarity=0.081  Sum_probs=47.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCC-CCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~-~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..+++|+|.|.+|..++..|.+  . +.+|+++++++        +.    .+.+++.|++++.+.. ...+      .+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~--------~~----~~~~~~~g~~~~~gd~-~~~~------~l   97 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIRE--------EA----AQQHRSEGRNVISGDA-TDPD------FW   97 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCH--------HH----HHHHHHTTCCEEECCT-TCHH------HH
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCH--------HH----HHHHHHCCCCEEEcCC-CCHH------HH
Confidence            4589999999999999999974  4 67899998764        11    1234556777654321 0000      00


Q ss_pred             EcCCCcEEeccEEEEcCCCC
Q 046865          215 LTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~  234 (369)
                      .-..+ .-.+|.||.+++..
T Consensus        98 ~~~~~-~~~ad~vi~~~~~~  116 (183)
T 3c85_A           98 ERILD-TGHVKLVLLAMPHH  116 (183)
T ss_dssp             HTBCS-CCCCCEEEECCSSH
T ss_pred             HhccC-CCCCCEEEEeCCCh
Confidence            00001 12589999998753

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=88.69  E-value=0.52  Score=41.73  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=29.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~   45 (369)
                      ...+|.|||+|..|.++|..|. ++.  +++|+|.++
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            4579999999999999998875 465  899999864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=88.60  E-value=0.4  Score=41.73  Aligned_cols=35  Identities=31%  Similarity=0.456  Sum_probs=29.3

Q ss_pred             CCcceEEEECCChHHHHHHHHcccCCcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~   45 (369)
                      ..+++|.|||+|..|...|..|..|++|+++|+++
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~laaG~~V~v~d~~~   44 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIASKHEVVLQDVSE   44 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHHcCCEEEEEECCH
Confidence            34789999999999999887655889999999875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.48  E-value=0.37  Score=39.82  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=28.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|.|||+|..|...|..|. .|++|+++++++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3468999999999999998885 589999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=88.44  E-value=0.38  Score=40.69  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=29.8

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ...++|.|||+|..|.+.|..|. .|++|+++++++
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34689999999999999999886 589999999864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=88.43  E-value=0.49  Score=41.97  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=29.2

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~   45 (369)
                      .....+|.|||+|..|.++|..|. ++.  +++|+|.+.
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            345679999999999999998875 565  899999863

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=88.39  E-value=0.37  Score=46.37  Aligned_cols=34  Identities=32%  Similarity=0.466  Sum_probs=30.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .-+|+|||||.+|+-+|..|+++  |.+|+++++.+
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~r--G~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAAS--GIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            46899999999999999999864  89999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-12
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	6e-07
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	9e-11
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-04
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	8e-10
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	6e-05
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	3e-08
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	8e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	3e-08
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	1e-07
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	2e-07
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	2e-07
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	0.001
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	2e-05
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	2e-05
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	4e-05
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	5e-05
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	7e-05
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	1e-04
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	2e-04
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	4e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	9e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.001
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	0.001
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.001
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	0.002
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	0.002
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	0.002
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	0.002
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	0.002
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.003

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 62.5 bits (150), Expect = 3e-12
 Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 14/185 (7%)

Query: 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EFIGPKAGDKTLD 187
           + R +++VGGG  G   A  I +  P  +VTL+   +             G +  +    
Sbjct: 1   AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKH 60

Query: 188 WLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILK- 246
                +         +   +        T+ G     D   +  G  +  D ++    K 
Sbjct: 61  GYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKI 120

Query: 247 -----DSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI-KQGFLAQKHAQVAAKNLKV 300
                 + D     +  +       K I  IGD +    + K G+ A    +VAA  + V
Sbjct: 121 AQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVV 180

Query: 301 LMVGE 305
           L+ GE
Sbjct: 181 LLKGE 185

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 47.1 bits (110), Expect = 6e-07
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINH 70
           ++VVV+GGG  G+  AK ++    S +VTLI+P   +   + S   +      E     +
Sbjct: 3   RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY 62

Query: 71  TDYLVNGRIVASP---AINITENEVLTAEGRRVVYDYLVIATGHK 112
                +G  V       I+  +  V TA G    YD  V+A G +
Sbjct: 63  DGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIE 107

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 58.2 bits (139), Expect = 9e-11
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 17/177 (9%)

Query: 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-------LLEFIGPKAGDKTLDWLI 190
            ++++G G   V    E+     +  +T+V   +        L +        + +    
Sbjct: 5   PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDC 64

Query: 191 SKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDS-L 249
            +  +V+    V   S    + T   S G T+      L TG    +    D + + + L
Sbjct: 65  KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGL 124

Query: 250 DTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL--------AQKHAQVAAKNL 298
             D  + VD   R     +++A+GD+T  R    G          AQ      A++L
Sbjct: 125 ACDDGIFVDAYGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHL 180

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 24/164 (14%)

Query: 14  KRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTD 72
             VVV+G G+A       L Q      +    +  E  +       +      +     D
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 73  YLVNGRI-----VASPAINITENEVLTAEGRRVVYDYLVIATGHK--------------- 112
                 +     V + + +   + V  ++GR + Y  LV+ATG                 
Sbjct: 64  CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAG 123

Query: 113 ---DPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAG 153
              D                       R    + G    +E   
Sbjct: 124 LACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWS 167

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 55.1 bits (131), Expect = 8e-10
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----EFIGPKAGDKTLDWLISKKV 194
           ++IVG GP G ELA +++  +   +VT++ K               AG    + L    +
Sbjct: 3   VVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59

Query: 195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGM 254
           D    + + +    E             +       T          D   +  + T   
Sbjct: 60  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119

Query: 255 LMVDENLRVKGQKNIFAIGDITDIRE--IKQGFLAQKHAQVAAKNLK 299
           +++D+N R    K+++AIGD  +           A + A+V A  LK
Sbjct: 120 ILIDDNFRTS-AKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILK 165

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 24/163 (14%)

Query: 15  RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITW-----ASLRAMVEPSFGERSVIN 69
           +VV++G G  G  +AK L  + +VT+ID +     +           +        S+  
Sbjct: 2   KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW 61

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDP--------------- 114
           +    +  R+     +     +V+  E   V YD LV+ATG  +                
Sbjct: 62  YRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGIL 121

Query: 115 -VPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA 156
                RT   + Y   +       S +I G     +E A  +A
Sbjct: 122 IDDNFRTSAKDVYAIGDCA---EYSGIIAGTAKAAMEQARVLA 161

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEFIGP- 179
           +  +++  +  +  +SI I+GGG  G ELA  +         +V  +      +  I P 
Sbjct: 24  IGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPE 83

Query: 180 KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG 232
              + T++ +  + V V     V    VS G        G  ++ D      G
Sbjct: 84  YLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 8e-04
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL-----QFSADVTLIDPKEYFEITWA--SLRAMVEPSFGE 64
           + K + +IGGG  GS +A +L         +V  + P++          L          
Sbjct: 36  EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR 95

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
             V           IV S  ++  +  +   +GR+V  D++V A G
Sbjct: 96  EGVKVMP-----NAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 28/188 (14%)

Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------------EFIGPKAGDKT 185
           ++++G    G E   E+    P+ ++    KG  +                        T
Sbjct: 3   VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62

Query: 186 LDWLISKKVDVKL---GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK----PVGSD 238
            + + S+ V+V        +            ++        D   +  G       G  
Sbjct: 63  GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVR 122

Query: 239 WLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL--------AQKH 290
                +          L+  +      + ++FA+GD T I+               A+K 
Sbjct: 123 PNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQ 182

Query: 291 AQVAAKNL 298
            + A KNL
Sbjct: 183 GRFAVKNL 190

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 39/223 (17%), Positives = 66/223 (29%), Gaps = 55/223 (24%)

Query: 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL--------------------- 173
           S    L++GGG      A  I    P  +V +V +   L                     
Sbjct: 3   SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTK 62

Query: 174 ---------------LEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST 218
                           +        + L  + +  V V  G++V    +    +    + 
Sbjct: 63  TLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKV--VQLDVRDNMVKLND 120

Query: 219 GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI 278
           G  I  +   + TG    +  L  T   +     G   V+  L+   + NI+  GD    
Sbjct: 121 GSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQ--ARSNIWVAGDAACF 178

Query: 279 REIKQGFL-------AQKHAQVAAKNLKVLMVGERESKMATYW 314
            +IK G         A    ++A +N    M G  +     YW
Sbjct: 179 YDIKLGRRRVEHHDHAVVSGRLAGEN----MTGAAKP----YW 213

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 27/182 (14%)

Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTLD 187
           ++IVG G  GVE+A  +     E  + LV   + +                         
Sbjct: 6   VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65

Query: 188 WLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCT-GKPV--GSDWLKDTI 244
                  +++L     + +++      + S G  +  D   L T G+P+    +      
Sbjct: 66  PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAG 125

Query: 245 LKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFL--------AQKHAQVAAK 296
               L  D  ++++E+++      I A+GD                    A + A+  A 
Sbjct: 126 ----LQVDNGIVINEHMQT-SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAA 180

Query: 297 NL 298
            L
Sbjct: 181 IL 182

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 110 GHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK 169
           G   PV   RT  L   +     ++    +LIVGGG  G+ELA           V+LV  
Sbjct: 6   GATMPVHTLRT--LEDARRIQAGLRPQSRLLIVGGGVIGLELAATA--RTAGVHVSLVET 61

Query: 170 GSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHF 228
             RL+         D    +  ++ VD++  + V            L   G  I AD   
Sbjct: 62  QPRLMSRAAPATLADFVARYHAAQGVDLRFERSVT----GSVDGVVLLDDGTRIAADMVV 117

Query: 229 LCTG 232
           +  G
Sbjct: 118 VGIG 121

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITW--ASLRAMVEPSFGERSVI 68
              R++++GGGV G  +A +       V+L++ +         A+L   V      + V 
Sbjct: 29  PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVD 88

Query: 69  NHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
              +  V G           +  VL  +G R+  D +V+  G
Sbjct: 89  LRFERSVTG---------SVDGVVLLDDGTRIAADMVVVGIG 121

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLI 190
           + I+++   +I+GGG  G+ELAG +        V L+H+G+  L     +  +   D L 
Sbjct: 27  ESIENSGEAIIIGGGFIGLELAGNL--AEAGYHVKLIHRGAMFLGL-DEELSNMIKDMLE 83

Query: 191 SKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG 232
              V   L        + E ++  + +    I+        G
Sbjct: 84  ETGVKFFLNSE-----LLEANEEGVLTNSGFIEGKVKICAIG 120

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD 195
           R +L VGGG   VE AG      P+  +VTL ++G  +L        ++    L +  + 
Sbjct: 21  RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQ 80

Query: 196 VKLGQRV-NLDSVSEGSDTYLTSTGDTIKADC 226
           +   +    ++  ++GS +    +G  +  D 
Sbjct: 81  ILTKENPAKVELNADGSKSVTFESGKKMDFDL 112

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVI 68
           ++ + K VV+IG G+ G               +            L   VE   G  +  
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDE 60

Query: 69  NHTDYLVNGRIVASPAINITENEVLTAEGRRV 100
                     IVASP I +    +  A    +
Sbjct: 61  WLMAA---DLIVASPGIALAHPSLSAAADAGI 89

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 3/100 (3%)

Query: 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK 193
                + +VG G  GVE      ++    K  L       L    P   +  ++ + ++ 
Sbjct: 19  ALPERVAVVGAGYIGVE--LGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEG 76

Query: 194 VDVKLGQRV-NLDSVSEGSDTYLTSTGDTIKADCHFLCTG 232
             +        +   ++GS T     G +   DC     G
Sbjct: 77  PQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 23/172 (13%), Positives = 48/172 (27%), Gaps = 10/172 (5%)

Query: 12  KNKRVVVIGGGVAGSLVA--KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVIN 69
               V+++G G +GS  A                ++                +       
Sbjct: 48  NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYR 107

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAE 129
            T      +      + + +  +   +  +   D ++IATG  +       +      AE
Sbjct: 108 ETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAE 167

Query: 130 NQKI------KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE 175
           N          +    LI     TG  +A EI       ++ + +K   +  
Sbjct: 168 NDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEA--NPQIAIPYKRETIAW 217

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 26/190 (13%), Positives = 63/190 (33%), Gaps = 7/190 (3%)

Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI----GPKAGDKTLDWLISKKV 194
           I ++G GP  +  A  +A       +T+  K   +                +     + +
Sbjct: 7   IALLGAGPASISCASFLA-RLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 65

Query: 195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGM 254
                + +   S+SE   T  T   +  KA    +   + +    +K+ +     +   +
Sbjct: 66  KDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDL 125

Query: 255 LMVDENLRVKGQKNIFAIGDITDIRE--IKQGFLAQKHAQVAAKNLKVLMVGERESKMAT 312
             VD       +  +FA GDI  +    ++     ++ +    K ++        +K   
Sbjct: 126 PEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPEL 185

Query: 313 YWPHSAIAIV 322
              ++ + +V
Sbjct: 186 PLFYTPVDLV 195

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 2/98 (2%)

Query: 137 RSILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD 195
           +  L VGGG   +E AG          +V L ++G  +L     +   +  + L +  ++
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 196 VKLGQRV-NLDSVSEGSDTYLTSTGDTIKADCHFLCTG 232
           V+  +    +   ++G+   +  +G     D   L  G
Sbjct: 79  VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 6/131 (4%)

Query: 12  KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINH 70
           K+KR+++IGGG V  + + K +     +TL+ P         S+          +   ++
Sbjct: 12  KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD-----LHKSIIPKFGKFIQNKDQPDY 66

Query: 71  TDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAEN 130
            +                  E + ++ +    D           +        +      
Sbjct: 67  REDAKRFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHL 126

Query: 131 QKIKSARSILI 141
            K +  +  L+
Sbjct: 127 CKERFGKQQLV 137

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 38.0 bits (87), Expect = 9e-04
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 224 ADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQ 283
            +C      +      +       ++   G + VD+ +R     +I+AIGDI     +  
Sbjct: 150 KNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVGQPMLAH 208

Query: 284 GFLAQKHAQVAAKNL 298
              A     VAA+N 
Sbjct: 209 --KAVHEGHVAAENC 221

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 25/214 (11%), Positives = 56/214 (26%), Gaps = 59/214 (27%)

Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------------------ 174
            + +GGG  G   +  +       +  +V +   L                         
Sbjct: 45  AIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLA 102

Query: 175 -----EFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCH-- 227
                ++  P   +K +       +        +     +  +           A     
Sbjct: 103 RTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN 162

Query: 228 -----------FLCTGKPVGSDWLKDTILKDSLDTD------------GMLMVDENLRVK 264
                             VG+      + +     +            G ++V+E L+  
Sbjct: 163 HTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQT- 221

Query: 265 GQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNL 298
              N++A+GD+       + F A+K    AA+N+
Sbjct: 222 SVPNVYAVGDLI--GGPMEMFKARKSGCYAARNV 253

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKE 45
          ++   VVIGGG+ GS +A  L + + +  L +   
Sbjct: 3  RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15 RVVVIGGGVAGSLVAKSL--QFSADVTLIDPKEYFEITWASLRA 56
          R+V+IG G+ G+ +A  L  +   ++T++D         ++  A
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHA 46

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLID 42
          K+K+++++G G +G+++ + L +    V +ID
Sbjct: 1  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIID 32

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDV 196
           + +++VGGG  G+EL    A      +V++V    R+L     +      + L    + +
Sbjct: 22  QHLVVVGGGYIGLELGI--AYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIAL 79

Query: 197 KLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTG 232
            LG  V  +    G        G    ++AD   +  G
Sbjct: 80  HLGHSV--EGYENGCLLANDGKGGQLRLEADRVLVAVG 115

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 24/159 (15%)

Query: 2   ESQRQQQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLIDPKEYFEITWASLRAMV 58
           E++       + K + V+G G AG   A +         +     +   +   A      
Sbjct: 32  ETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPG- 90

Query: 59  EPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT 118
                +        Y     ++    + +  N  +TA+  +  +D  ++A+G  +     
Sbjct: 91  -----KEEFYETLRYYRR--MIEVTGVTLKLNHTVTADQLQ-AFDETILASGIPNRALA- 141

Query: 119 RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAV 157
                         I S +++ ++GG    +EL    A+
Sbjct: 142 -----------QPLIDSGKTVHLIGGCDVAMELDARRAI 169

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 13 NKRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKE 45
           KRVVV+G GV G   A  L      V ++    
Sbjct: 6  QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS 191
            IK ++ I IVG G   VEL   I     +    +  +G+R+L        +   + +  
Sbjct: 18  NIKESKKIGIVGSGYIAVELINVIKRLGIDS--YIFARGNRILRKFDESVINVLENDMKK 75

Query: 192 KKVDVKLGQRV-NLDSVSEGSDTYLTSTGDTIKA 224
             +++     V  +  VS+ + +   S G   + 
Sbjct: 76  NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEH 109

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 22/176 (12%)

Query: 139 ILIVGGGPTGVELA--------------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 184
           +LI+G GP G   A              G            + +      +  GP   ++
Sbjct: 8   LLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMER 67

Query: 185 TLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTI 244
             +     + ++       +D   +     L         D   + TG           I
Sbjct: 68  MHEHATKFETEIIFDHINKVD--LQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAI 125

Query: 245 LKDSLDTD-GMLMVDENLRVKGQKN----IFAIGDITDIREIKQGFLAQKHAQVAA 295
            +  L+ + G + V   +     +     +FA GD+ D    +Q   +     +AA
Sbjct: 126 FEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAA 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.89
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.89
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.88
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.87
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.86
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.85
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.85
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.84
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.83
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.82
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.81
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.81
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.8
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.8
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.79
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.79
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.78
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.78
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.78
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.78
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.78
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.77
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.77
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.77
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.76
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.74
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.73
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.73
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.72
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.72
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.72
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.71
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.71
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.7
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.68
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.68
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.67
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.66
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.64
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.56
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.55
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.54
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.47
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.46
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.45
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.42
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.4
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.39
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.37
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.37
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.37
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.34
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.31
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.3
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.27
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.23
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.23
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.2
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.08
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.07
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.05
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.05
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.03
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.02
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.02
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.0
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.99
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.99
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.97
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.95
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.94
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.92
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.89
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.89
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.87
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.85
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.85
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.83
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.81
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.79
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.79
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.79
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.77
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.76
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.76
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.74
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.73
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.68
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.67
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.66
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.64
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.62
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.62
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.62
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.6
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.57
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.57
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.54
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.52
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.5
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.5
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.5
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.47
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.46
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.46
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.44
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.42
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.41
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.4
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.39
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.36
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.34
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.33
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.32
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.3
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.29
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.27
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.2
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.18
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.15
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.13
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.09
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.07
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.05
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.04
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.82
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.8
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.77
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.71
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.71
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.68
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.67
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.61
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.61
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.59
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.55
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.51
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.49
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.44
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.43
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.4
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.39
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.35
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.31
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.31
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.28
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.28
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.27
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	97.25
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.17
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.13
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.13
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.12
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.07
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	97.02
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.01
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.94
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	96.86
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.83
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.76
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.73
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.7
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.63
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	96.62
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.59
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.46
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.35
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.31
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.3
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.1
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.07
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.97
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.92
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.91
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.86
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.84
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.79
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.77
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.76
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.7
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.63
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.55
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.5
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.39
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.38
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.38
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.37
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.36
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.29
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.27
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.26
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.21
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.1
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.08
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.02
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.84
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	94.75
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.75
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.61
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.6
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	94.56
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.42
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.41
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.33
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	94.3
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.3
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.26
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.22
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.17
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	94.01
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.98
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.83
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.73
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.66
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.57
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.54
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.46
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.33
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.31
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.3
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.27
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.25
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.24
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	93.0
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.95
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.87
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.72
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	92.68
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.67
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.67
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.43
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.39
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.38
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.24
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.09
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.0
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	92.0
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.87
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	91.77
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.57
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.56
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	91.42
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.42
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.36
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.35
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	91.29
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	91.23
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.1
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.03
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	90.98
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	90.8
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	90.71
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	90.69
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.64
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.64
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.62
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	90.58
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.55
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.51
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.29
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.19
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.18
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	90.08
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	90.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.75
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.72
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	89.69
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	89.56
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.53
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	89.43
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	89.25
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.17
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.63
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.56
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	88.23
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	88.01
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.98
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	87.91
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.91
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	87.89
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.88
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.87
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	87.84
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	87.53
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	87.51
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	87.46
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.36
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	87.32
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	87.18
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	87.13
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	87.09
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	86.97
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.91
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	86.77
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.58
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	86.58
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.47
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.47
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	86.44
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	86.19
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	86.17
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	86.04
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	86.01
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.99
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	85.91
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	85.5
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.07
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	85.05
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	85.01
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.7
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	84.68
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	84.57
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.44
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	84.17
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	84.13
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	83.66
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	83.6
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	83.49
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	83.49
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	83.16
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.06
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	82.61
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	82.48
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	82.36
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	82.35
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	82.32
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	82.26
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.21
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	82.18
d1vp8a_	190	Hypothetical protein AF0103 {Archaeoglobus fulgidu	82.17
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	81.99
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	81.88
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	81.78
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	81.55
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	81.42
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	81.28
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	81.06
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	80.95
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	80.67
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.01

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.89  E-value=1.7e-23  Score=174.18  Aligned_cols=158  Identities=23%  Similarity=0.293  Sum_probs=122.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc------c----c---CCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------E----F---IGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l------~----~---~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      +|+|||||++|+|+|..|++..++.+|+++++.+.+.      +    .   ..+.+.....+.++++||++++++.|.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            6999999999999999999877888999999876541      1    0   0122333345678899999999999999


Q ss_pred             ccCCCCCeEEE-cCCCc--EEeccEEEEcCCCCC--------CchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEec
Q 046865          205 DSVSEGSDTYL-TSTGD--TIKADCHFLCTGKPV--------GSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIG  273 (369)
Q Consensus       205 i~~~~~~~~v~-~~~g~--~i~~d~vi~a~G~~p--------~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~G  273 (369)
                      ++.+++.+++. +.+|+  ++++|.+|+|+|..|        ++.++..   ...++++|+|.||+++|| +.|+|||+|
T Consensus        82 i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~---~~~~~~~G~i~vd~~~~T-~~~~IyA~G  157 (198)
T d1nhpa1          82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG---TLELHPNGLIKTDEYMRT-SEPDVFAVG  157 (198)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT---TSCBCTTSCBCCCTTCBC-SSTTEEECG
T ss_pred             EeeccccceeeecccccccccccceeeEeecceeecccccccccccccc---cceeccCCceecCCcccc-cccceEEec
Confidence            98776666654 45554  578999999998764        3444443   225788999999999998 799999999


Q ss_pred             ccCCcccc--------chhHHHHHHHHHHHHHHH
Q 046865          274 DITDIREI--------KQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       274 D~~~~~~~--------~~~~~A~~~g~~~a~~i~  299 (369)
                      ||+..+..        ..+..|.+||+++|+||.
T Consensus       158 D~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~  191 (198)
T d1nhpa1         158 DATLIKYNPADTEVNIALATNARKQGRFAVKNLE  191 (198)
T ss_dssp             GGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             ceeecccccCCCcccccHHHHHHHHHHHHHHhhC
Confidence            99975421        246789999999999985

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.89  E-value=4.6e-24  Score=180.86  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             CCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          232 GKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       232 G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      |+.|+++.+..+.+++++|++|+|.||+++|| +.|+|||+|||+..+.  +.+.|..+|+.||++|+
T Consensus       150 gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T-~v~gi~A~GDv~~g~~--l~~~A~~~g~~aa~~i~  214 (221)
T d1dxla1         150 GRTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIPGPM--LAHKAEEDGVACVEYLA  214 (221)
T ss_dssp             CEEECCTTSCCTTTTCCBCSSSCBCCCTTCBC-SSTTEEECSTTSSSCC--CHHHHHHHHHHHHHHHT
T ss_pred             CccccCCCCChHhcCceEcCCCcEEeCCCccc-CCCCEEEEeccCCCcc--cHHHHHHHHHHHHHHHc
Confidence            67788888877777889999999999999998 7999999999997654  68999999999999997

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.88  E-value=3.7e-23  Score=170.01  Aligned_cols=158  Identities=20%  Similarity=0.235  Sum_probs=114.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCC-cchHHHHH----------HHHHhCCcEEEeCceeeec
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG-PKAGDKTL----------DWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~-~~~~~~~~----------~~l~~~gv~i~~~~~v~~i  205 (369)
                      .+|+|||||++|+|+|..|++.  +.+++++.++++.++.++ +.+...+.          +.....+|++++++.+.++
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~--g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i   81 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQA--GYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   81 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHH--TCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhc--CCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccc
Confidence            5699999999999999999865  555555555444443322 22222222          2234568999999999887


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhccccc-CCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc---
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTIL-KDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI---  281 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~-~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~---  281 (369)
                      ..+.  ..+.+++|+++++|.+|+|+|..|++.++..... ...++.++.|.||+++|| +.|+|||+|||+..+.+   
T Consensus        82 ~~~~--~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~~~~t-s~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          82 DPQA--HTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYGRT-TCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             ETTT--TEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCTTCBC-SSTTEEECGGGEEEECTTTC
T ss_pred             cccc--ceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEeccceec-cccccchhhhhhccceeeCC
Confidence            6443  4577889999999999999999998765543211 011334567999999998 79999999999865421   


Q ss_pred             -----chhHHHHHHHHHHHHHHH
Q 046865          282 -----KQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       282 -----~~~~~A~~~g~~~a~~i~  299 (369)
                           .++..|.+||+++|+||+
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil  181 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLV  181 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHH
T ss_pred             ceechhHHHHHHHHHHHHHHHHc
Confidence                 357789999999999997

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-22  Score=170.04  Aligned_cols=170  Identities=20%  Similarity=0.233  Sum_probs=120.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc-------cccccc-------------ccc----CCcccccce
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI-------TWASLR-------------AMV----EPSFGERSV   67 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~-------~~~~~~-------------~~~----~~~~~~~~~   67 (369)
                      +||||||||||||++||..++ .|.+|+|||++..-|.       +...+.             ...    ...+.....
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVI   82 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhh
Confidence            699999999999999999887 4999999999764321       000000             000    000000000


Q ss_pred             ecc------------ccc--cccceEEEeeeeeeecceE-EecCCeEEeccEEEEccCCCCCCCCChHHHHHHHHHHHHH
Q 046865           68 INH------------TDY--LVNGRIVASPAINITENEV-LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQK  132 (369)
Q Consensus        68 ~~~------------~~~--~~~~~~~~~~~~~~~~~~v-~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~~~~~~~~~  132 (369)
                      ...            ...  ..+++++.+.+.+...+.+ .......+..+.++++||+.|.+|.               
T Consensus        83 ~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~---------------  147 (221)
T d3grsa1          83 KEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPH---------------  147 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCC---------------
T ss_pred             hhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCC---------------
Confidence            000            000  1257888888777765422 2234467889999999999988874               


Q ss_pred             HhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe
Q 046865          133 IKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD  212 (369)
Q Consensus       133 ~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~  212 (369)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (221)
T d3grsa1         148 --------------------------------------------------------------------------------  147 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHH
Q 046865          213 TYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQ  292 (369)
Q Consensus       213 ~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~  292 (369)
                                         |+.||++.|..+.++++++++|+|.||+++|| +.|+|||+|||++.+.  +.+.|..+|+
T Consensus       148 -------------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T-~~~gvyA~GDv~~~~~--l~~~A~~~G~  205 (221)
T d3grsa1         148 -------------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCGKAL--LTPVAIAAGR  205 (221)
T ss_dssp             -------------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGTSSC--CHHHHHHHHH
T ss_pred             -------------------ccccCCCCcCchhcCcEECCCccEEeCCCccc-cCCcEEEEEEccCCcC--cHHHHHHHHH
Confidence                               34577777766667778999999999999998 8999999999997654  6789999999


Q ss_pred             HHHHHHH
Q 046865          293 VAAKNLK  299 (369)
Q Consensus       293 ~~a~~i~  299 (369)
                      .||++|.
T Consensus       206 ~aa~~~~  212 (221)
T d3grsa1         206 KLAHRLF  212 (221)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999998

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=7.5e-22  Score=168.72  Aligned_cols=112  Identities=17%  Similarity=0.110  Sum_probs=83.5

Q ss_pred             HHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCc--EEeccEEEEcCCCCCCch--------hhcccccCCCCCC-
Q 046865          183 DKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGD--TIKADCHFLCTGKPVGSD--------WLKDTILKDSLDT-  251 (369)
Q Consensus       183 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~--------~l~~~~~~~~~~~-  251 (369)
                      ..+...+++++|+++.+...-.   ..+...+...+++  .+.++.+++++|.+|...        .+.....++.++. 
T Consensus       105 ~g~~~~l~~~~V~vi~G~~~~~---~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~  181 (235)
T d1h6va1         105 WGYRVALREKKVVYENAYGKFI---GPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKINEK  181 (235)
T ss_dssp             HHHHHHHHHHTCEEECCEEEEE---ETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCCSS
T ss_pred             chhhhhhhccCceEEEeEEeec---cccceecccccccccccccccceeecCCCceeEEEeeccceeeccccceeeeccc
Confidence            3455567778999987765432   2234445555554  588999999999988642        2333444556775 


Q ss_pred             CCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          252 DGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       252 ~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      .|+|.||++||| +.|+|||+|||+..+ +.+++.|+.+|++||+||+
T Consensus       182 ~g~I~vd~~~~T-svpgIyA~GDv~~g~-~~l~~~A~~eG~~aa~~~~  227 (235)
T d1h6va1         182 TGKIPVTDEEQT-NVPYIYAIGDILEGK-LELTPVAIQAGRLLAQRLY  227 (235)
T ss_dssp             SCCBCCCTTSBC-SSTTEEECGGGBTTS-CCCHHHHHHHHHHHHHHHH
T ss_pred             cCccccCCcccc-CCCCEEEEEeccCCC-cccHHHHHHHHHHHHHHHc
Confidence            599999999998 799999999998653 3478999999999999998

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.85  E-value=1.2e-21  Score=158.36  Aligned_cols=151  Identities=25%  Similarity=0.405  Sum_probs=113.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-----------C-CcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------I-GPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-----------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      .+++|||||++|+|+|..|++   +.+||++++.+.....           . ...+.....+.+++.++++++++.++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~   77 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ---TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   77 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT---TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CeEEEECCcHHHHHHHHHHHc---CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccc
Confidence            379999999999999999863   6799999987642110           0 111223335667788999999999988


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc--cc
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE--IK  282 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~--~~  282 (369)
                      ++...   .+.+.+++++++|.+|||+|.+| ++++...++  ..+  +.|.||+++|+ +.|+|||+|||+..+.  +.
T Consensus        78 i~~~~---~~~~~~~~~i~~D~li~a~G~~~-~~~~~~~gl--~~~--~~i~v~~~~~t-~~~~i~aiGD~~~~~~~~~~  148 (167)
T d1xhca1          78 IDRGR---KVVITEKGEVPYDTLVLATGAPN-VDLARRSGI--HTG--RGILIDDNFRT-SAKDVYAIGDCAEYSGIIAG  148 (167)
T ss_dssp             EETTT---TEEEESSCEEECSEEEECCCEEC-CHHHHHTTC--CBS--SSEECCTTSBC-SSTTEEECGGGEEBTTBCCC
T ss_pred             ccccc---ccccccccccccceeEEEEEecC-CchhhhcCc--eeC--CceeeccccEe-cCCCeEEeeecccCCCeEEC
Confidence            75332   24455667899999999999876 456655554  333  35999999998 7999999999986643  34


Q ss_pred             hhHHHHHHHHHHHHHHH
Q 046865          283 QGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       283 ~~~~A~~~g~~~a~~i~  299 (369)
                      .++.|++||+.+|+||+
T Consensus       149 ~~~~a~~~a~~~a~~i~  165 (167)
T d1xhca1         149 TAKAAMEQARVLADILK  165 (167)
T ss_dssp             SHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHcC
Confidence            67899999999999986

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.5e-22  Score=165.15  Aligned_cols=157  Identities=21%  Similarity=0.298  Sum_probs=118.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC-----------------------------------Ccc-
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------------------------------GPK-  180 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~-----------------------------------~~~-  180 (369)
                      .+++|||+|++|+|+|..|+++.+..+|+++.+.+.+ |..                                   +++ 
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~-py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL-PYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   83 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC-CBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC-CccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence            4689999999999999999887777899999875432 100                                   000 


Q ss_pred             -hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc-hhhcccccCCCCCCCCcEEeC
Q 046865          181 -AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS-DWLKDTILKDSLDTDGMLMVD  258 (369)
Q Consensus       181 -~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~-~~l~~~~~~~~~~~~g~i~vd  258 (369)
                       ........+++.||+++++++|+.++.++  .+|++++|++++||.+|+|+|..|+. ++....++.+ .+..|.|.||
T Consensus        84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~~--~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~-~~~~~~i~vd  160 (213)
T d1m6ia1          84 YVSAQDLPHIENGGVAVLTGKKVVQLDVRD--NMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEI-DSDFGGFRVN  160 (213)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGG--TEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCB-CTTTCSEECC
T ss_pred             hhhhhhHHHHHHCCeEEEeCCEEEEeeccC--ceeeeccceeeccceEEEeeeeecchhhhhhccchhh-hhhhhhhhhh
Confidence             11122334567899999999999986543  36888999999999999999976544 4555555532 1345789999


Q ss_pred             CceeeccCCCeEEecccCCccc-------cchhHHHHHHHHHHHHHHH
Q 046865          259 ENLRVKGQKNIFAIGDITDIRE-------IKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       259 ~~l~~~~~~~i~a~GD~~~~~~-------~~~~~~A~~~g~~~a~~i~  299 (369)
                      ++||+ + |+|||+|||+..+.       +..+..|..||++||+||+
T Consensus       161 ~~l~~-~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~  206 (213)
T d1m6ia1         161 AELQA-R-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMT  206 (213)
T ss_dssp             TTCEE-E-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred             HhcCc-C-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhc
Confidence            99998 4 99999999986543       2346789999999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.84  E-value=4.2e-20  Score=151.30  Aligned_cols=167  Identities=24%  Similarity=0.269  Sum_probs=123.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCC----------cchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG----------PKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~----------~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      +++|+|||||++|+|+|..|++..+..+|+++++.+.++....          ..........+...++++..++.+...
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGID   81 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEeee
Confidence            5899999999999999999998777789999999886543211          111111234456678888877554422


Q ss_pred             cCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCC-----CCCCCCcEEeCC-ceeeccCCCeEEecccCCc-
Q 046865          206 SVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKD-----SLDTDGMLMVDE-NLRVKGQKNIFAIGDITDI-  278 (369)
Q Consensus       206 ~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~-----~~~~~g~i~vd~-~l~~~~~~~i~a~GD~~~~-  278 (369)
                         .....+.+.+++++++|.+|+|+|.+|+++++.......     ....++++.+++ .++.++.++||++||++.. 
T Consensus        82 ---~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~  158 (186)
T d1fcda1          82 ---PDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIAN  158 (186)
T ss_dssp             ---TTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEECT
T ss_pred             ---eccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccccC
Confidence               233456778889999999999999999987765543210     112345666654 4676789999999999854 


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865          279 REIKQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       279 ~~~~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                      +.++.++.|.+||+++|+||.+.+.|+
T Consensus       159 ~~p~~~~~A~~q~~~~A~ni~~~~~G~  185 (186)
T d1fcda1         159 PMPKSGYSANSQGKVAAAAVVVLLKGE  185 (186)
T ss_dssp             TCCSSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCchHhHHHHHHHHHHHHHHHHhcCC
Confidence            346778999999999999999999885

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=8.3e-21  Score=155.89  Aligned_cols=156  Identities=20%  Similarity=0.187  Sum_probs=113.7

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-C--------------CcchHHHHHHHHHhCCcEEEeC
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-I--------------GPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-~--------------~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      ..++|+|||||++|+|+|..|++.  +.+++++.+.++.... .              ...............++++..+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~--g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRAS--GWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGG   79 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHc--CCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecc
Confidence            357999999999999999999854  6666666554432211 0              1122222344566778888888


Q ss_pred             ceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch---hhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccC
Q 046865          200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD---WLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDIT  276 (369)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~---~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~  276 (369)
                      ..+..+..  ....+.+.++.++++|.+++++|.+|+++   ++...+    +..+|++.||++||| +.|+|||+|||+
T Consensus        80 ~~~~~~~~--~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~----~~~~~~i~Vd~~~~t-s~~~vya~GD~~  152 (185)
T d1q1ra1          80 TQVTAINR--DRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAG----LQVDNGIVINEHMQT-SDPLIMAVGDCA  152 (185)
T ss_dssp             CCEEEEET--TTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTT----CCBSSSEECCTTSBC-SSTTEEECGGGE
T ss_pred             ceeeeecc--cccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCC----ccccCccccCCcccc-chhhhhcchhhh
Confidence            87776653  33457778888999999999999887544   333322    344678999999998 799999999998


Q ss_pred             Cccc--------cchhHHHHHHHHHHHHHHH
Q 046865          277 DIRE--------IKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       277 ~~~~--------~~~~~~A~~~g~~~a~~i~  299 (369)
                      ..+.        ..+++.|.+||+.||+||+
T Consensus       153 ~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~  183 (185)
T d1q1ra1         153 RFHSQLYDRWVRIESVPNALEQARKIAAILC  183 (185)
T ss_dssp             EEEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             ccccccCCcccchhhHHHHHHHHHHHHHHcc
Confidence            7643        2367899999999999997

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.82  E-value=9.4e-21  Score=160.87  Aligned_cols=111  Identities=17%  Similarity=0.177  Sum_probs=82.3

Q ss_pred             HHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC--cEEeccEEEEcCCCCCCch-------hhcccccCCCCCCCC
Q 046865          183 DKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG--DTIKADCHFLCTGKPVGSD-------WLKDTILKDSLDTDG  253 (369)
Q Consensus       183 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~-------~l~~~~~~~~~~~~g  253 (369)
                      ..+...++..||+++.+......   ..........+  .++.++.+++++|.+|...       .+..+.+++.+|++|
T Consensus       103 ~~~~~~~~~~gV~vi~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G  179 (229)
T d3lada1         103 GGVASLIKANGVTLFEGHGKLLA---GKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERG  179 (229)
T ss_dssp             HHHHHHHHHHTCEEEESEEEECS---TTCEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTS
T ss_pred             hhHHHHhhcCCeEEEEeEEcccc---cceeeccccCccceeeecccccccCCcccccccccccccccchHhcCeeecCCC
Confidence            44556677789999887655422   22233333332  4688999999999876432       122334566889999


Q ss_pred             cEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          254 MLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       254 ~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      +|.||+++|| +.|+|||+|||+..+.  +.+.|..+|+.+|++|+
T Consensus       180 ~i~vd~~~~T-~vpgiyA~GDv~~g~~--l~~~A~~~G~~aa~~i~  222 (229)
T d3lada1         180 FIYVDDYCAT-SVPGVYAIGDVVRGAM--LAHKASEEGVVVAERIA  222 (229)
T ss_dssp             CBCCCTTSBC-SSTTEEECGGGSSSCC--CHHHHHHHHHHHHHHHH
T ss_pred             cEEecccccC-CCCCEEEEeCCcchHH--HHHHHHHHHHHHHHHHc
Confidence            9999999998 7999999999997654  67899999999999998

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=9.6e-20  Score=154.01  Aligned_cols=155  Identities=27%  Similarity=0.295  Sum_probs=115.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc--------------------------cc---------cCC---
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL--------------------------LE---------FIG---  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~--------------------------l~---------~~~---  178 (369)
                      ..++|||+|+.|+++|..+++  .|.+|+++++...-                          ..         .++   
T Consensus         4 ~DviVIG~GpaGl~aA~~aar--~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAK   81 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHH
Confidence            468999999999999998874  58999999875310                          00         000   


Q ss_pred             ---------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc-CCCcEEeccEEEEcC--------CCCCCchhh
Q 046865          179 ---------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT-STGDTIKADCHFLCT--------GKPVGSDWL  240 (369)
Q Consensus       179 ---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~i~~d~vi~a~--------G~~p~~~~l  240 (369)
                               ..+.......++..+|+++.+...  +.. .....+.. .+..++.++.+|+++        |++||++.|
T Consensus        82 ~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~--f~~-~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l  158 (223)
T d1ebda1          82 VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY--FVD-ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDEL  158 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE--EEE-TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSS
T ss_pred             HhhHHHHHHHHHHhhHHHhhhccceeeeccEEE--Ecc-CcccceeccccceEEecccEEEEcCCCccccccceecCCCC
Confidence                     012233345567789999877532  211 22223333 334578999999985        889999988


Q ss_pred             cccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          241 KDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       241 ~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      ..+.+++++|++|+|.||++||| +.|+|||+|||++.+.  +.+.|..||+.||++|+
T Consensus       159 ~l~~~gv~~~~~G~I~vd~~~~T-~~~gvyA~GDv~~~~~--~~~~A~~~g~~aa~~i~  214 (223)
T d1ebda1         159 GLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDIVPGPA--LAHKASYEGKVAAEAIA  214 (223)
T ss_dssp             STTTTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSSSCC--CHHHHHHHHHHHHHHHT
T ss_pred             ChHhcCceECCCCCEeECCCCCC-CCCCEEEEeccCCCcc--cHHHHHHHHHHHHHHHc
Confidence            77777888999999999999999 7999999999998764  68899999999999997

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.81  E-value=6.8e-20  Score=155.72  Aligned_cols=76  Identities=20%  Similarity=0.283  Sum_probs=61.8

Q ss_pred             EEeccEEEEc-CCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          221 TIKADCHFLC-TGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       221 ~i~~d~vi~a-~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      ...++-++++ .++.|++..+..+.+++++|++|+|.||++||| +.|+|||+|||++.+.  +.+.|+.||++||+||+
T Consensus       146 ~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~T-svpgVyAaGDv~~~~~--l~~~A~~eG~~Aa~~i~  222 (229)
T d1ojta1         146 IVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVGQPM--LAHKAVHEGHVAAENCA  222 (229)
T ss_dssp             EEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEECGGGTCSSC--CHHHHHHHHHHHHHHHT
T ss_pred             ceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccC-CCCCEEEEEecCCCcc--hHHHHHHHHHHHHHHHc
Confidence            3445555445 455677766666667779999999999999998 7999999999998764  68899999999999997

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=8.9e-20  Score=137.21  Aligned_cols=104  Identities=18%  Similarity=0.164  Sum_probs=92.8

Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .........|++++|||+|++|+|+|..|++  .|.+||++++++++++.+++++++.+.+.|+++||++++++.+++++
T Consensus        12 ~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~   89 (116)
T d1gesa2          12 DGFFALPALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVV   89 (116)
T ss_dssp             HHHHHCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEE
T ss_pred             HHHhChhhCCCEEEEECCChhhHHHHHHhhc--cccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            3334444678999999999999999999984  49999999999999999999999999999999999999999999987


Q ss_pred             CCCC-CeEEEcCCCcEEeccEEEEcCC
Q 046865          207 VSEG-SDTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       207 ~~~~-~~~v~~~~g~~i~~d~vi~a~G  232 (369)
                      .+++ .+.+++++|+++++|.||+|+|
T Consensus        90 ~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          90 KNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             ECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            6543 5788899999999999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=1.4e-19  Score=152.81  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=41.7

Q ss_pred             CCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          251 TDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       251 ~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      ++|+|.||+++|| +.|+|||+|||++.+.  +++.|..+|+++|++|+
T Consensus       168 ~~g~i~vd~~~~T-~~~~I~A~GDv~~~~~--l~~~a~~~g~~~a~~i~  213 (220)
T d1lvla1         168 NGAAIAIDERCQT-SMHNVWAIGDVAGEPM--LAHRAMAQGEMVAEIIA  213 (220)
T ss_dssp             ETTEECCCTTCBC-SSTTEEECGGGGCSSC--CHHHHHHHHHHHHHHHT
T ss_pred             cCCcccccchhhc-CCCCEEEEEEeCCccc--chhhhhhhHHHHHHHHc
Confidence            3588999999999 7999999999998764  78999999999999997

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.79  E-value=2.4e-19  Score=155.32  Aligned_cols=152  Identities=20%  Similarity=0.217  Sum_probs=107.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------------------cCC---cch
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------------FIG---PKA  181 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------------------------~~~---~~~  181 (369)
                      .++|||+|+.|+++|..+++  .+.+|+++++.+.+..                                 ...   ...
T Consensus        44 DvvVIGgG~aG~~aA~~~a~--~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  121 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGI  121 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCH
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccH
Confidence            59999999999999999885  4899999998765421                                 000   000


Q ss_pred             ---HHH------------HHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccc--
Q 046865          182 ---GDK------------TLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTI--  244 (369)
Q Consensus       182 ---~~~------------~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~--  244 (369)
                         .+.            ..+.+...++....+....-+.  .  .++. .+|+++++|.+++|+|.+|+++.+....  
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d--~--~~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~  196 (261)
T d1mo9a1         122 KEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID--N--HTVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRS  196 (261)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE--T--TEEE-ETTEEEEBSCEEECCCEECCCCCSTCEECC
T ss_pred             HHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee--e--cccc-cccceEeeeeeeeccCCCCCcCcccccccc
Confidence               000            0111222333333322222111  1  1222 3577899999999999999987665432  


Q ss_pred             ------cCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          245 ------LKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       245 ------~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                            ++++++++|+|.||++||| +.|+|||+|||++.|.  +++.|..||++||.||+
T Consensus       197 ~~l~~~~Gl~~~~~G~I~Vn~~~~T-s~~~IyA~GDv~~~~~--l~~~A~~~G~~aa~~i~  254 (261)
T d1mo9a1         197 AELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIGGPM--EMFKARKSGCYAARNVM  254 (261)
T ss_dssp             HHHHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGCSSC--SHHHHHHHHHHHHHHHT
T ss_pred             cccccceeeeeccCCEEEeCCCccc-CCCCEEEEEEeCCCcc--cHHHHHHHHHHHHHHHC
Confidence                  4568899999999999999 7999999999997654  78999999999999997

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.79  E-value=3.9e-19  Score=134.14  Aligned_cols=101  Identities=19%  Similarity=0.286  Sum_probs=90.5

Q ss_pred             HhcCCeEEEEcCChhHHHHHHHHhhh-CCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCC-CC
Q 046865          133 IKSARSILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVS-EG  210 (369)
Q Consensus       133 ~~~~~~v~vvG~G~~g~e~a~~l~~~-~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~  210 (369)
                      ...|++++|||||++|+|+|..|... ..+.+|+++++++++++.+++++++.+++.++++||++++++.+++++.+ ++
T Consensus        15 ~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g   94 (117)
T d1feca2          15 DEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADG   94 (117)
T ss_dssp             SSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTS
T ss_pred             cccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCC
Confidence            35689999999999999999887653 24789999999999999999999999999999999999999999999754 44


Q ss_pred             CeEEEcCCCcEEeccEEEEcCCC
Q 046865          211 SDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       211 ~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      ...+.+++|+++++|.||||+|+
T Consensus        95 ~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          95 TRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             CEEEEETTSCEEEESEEEECSCE
T ss_pred             EEEEEECCCCEEEcCEEEEecCC
Confidence            56788999999999999999996

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5.4e-19  Score=150.36  Aligned_cols=73  Identities=19%  Similarity=0.141  Sum_probs=64.3

Q ss_pred             ccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          224 ADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       224 ~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      .+..+.++|++|+++.|..+.++++++++|+|.||++++| +.|+|||+||++..+.  +++.|..+|+.||++|+
T Consensus       154 ~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T-~~~~v~A~GD~~~g~~--l~~~a~~~G~~aa~~i~  226 (233)
T d1v59a1         154 GSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS-KFPHIKVVGDVTFGPM--LAHKAEEEGIAAVEMLK  226 (233)
T ss_dssp             CEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBC-SSTTEEECGGGSSSCC--CHHHHHHHHHHHHHHHH
T ss_pred             ccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEec-CCCCEEEEcCCcccHH--HHHHHHHHHHHHHHHHc
Confidence            3455558999999998877777888999999999999998 7999999999997765  68899999999999997

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.78  E-value=5.6e-19  Score=133.49  Aligned_cols=105  Identities=26%  Similarity=0.368  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCc
Q 046865          122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      .+.+...+.+....+++++|||||++|+|+|..|++  .+.+||++++++++++ .+++++++.+++.++++||++++++
T Consensus        16 tl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~   93 (121)
T d1d7ya2          16 TLEDARRIQAGLRPQSRLLIVGGGVIGLELAATART--AGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER   93 (121)
T ss_dssp             SHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESC
T ss_pred             CHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhc--ccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCC
Confidence            345666666667778999999999999999999985  4999999999999997 6799999999999999999999999


Q ss_pred             eeeeccCCCCCeEEEcCCCcEEeccEEEEcCC
Q 046865          201 RVNLDSVSEGSDTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G  232 (369)
                      .|+++..  +  .++++||+++++|.||+|+|
T Consensus        94 ~v~~~~~--~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          94 SVTGSVD--G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             CEEEEET--T--EEEETTSCEEECSEEEECSC
T ss_pred             EEEEEeC--C--EEEECCCCEEECCEEEEeeC
Confidence            9987753  2  47789999999999999998

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.78  E-value=3.2e-19  Score=152.67  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=47.9

Q ss_pred             cccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          243 TILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       243 ~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      +.++++++++|+|.||+++|| +.|+|||+|||++.+.  +.+.|..||+.||+||+
T Consensus       179 ~~~gv~~~~~G~I~vd~~~~T-s~~~iyA~GDv~~~~~--~~~~A~~eg~~aa~~~~  232 (240)
T d1feca1         179 EKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTDRVM--LTPVAINEGAAFVDTVF  232 (240)
T ss_dssp             GGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGCSCC--CHHHHHHHHHHHHHHHH
T ss_pred             cccCeEECCCCcEEcCcccCc-CCCCEEEEEECCCCcc--chhhHHHHHHHHHHHHh
Confidence            344568899999999999998 7999999999997754  67899999999999998

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=3.4e-18  Score=145.36  Aligned_cols=159  Identities=25%  Similarity=0.252  Sum_probs=113.1

Q ss_pred             eEEEEcCChhHHHHHHHHhhh-CCCCeEEEEEcCcc--------------c---------c---cc-----------CC-
Q 046865          138 SILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSR--------------L---------L---EF-----------IG-  178 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~-~~~~~v~lv~~~~~--------------~---------l---~~-----------~~-  178 (369)
                      +++|||+||.|+..|...++. ..+.+|+++++..-              +         +   +.           ++ 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            689999999999998766543 23578999987430              0         0   00           00 


Q ss_pred             -----------cchHHHHHHHHHhCCcEEEeCceeeeccCC---CCCeEEEcCCCc--EEeccEEEEcCCCCCCc-----
Q 046865          179 -----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVS---EGSDTYLTSTGD--TIKADCHFLCTGKPVGS-----  237 (369)
Q Consensus       179 -----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~---~~~~~v~~~~g~--~i~~d~vi~a~G~~p~~-----  237 (369)
                                 ......+...++..||+++.+.........   ...+.++..+|+  ++++|.+|+|+|.+|..     
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~  162 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGS  162 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCE
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccc
Confidence                       011123456678899999987543211111   123456666764  69999999999998753     


Q ss_pred             ----hhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          238 ----DWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       238 ----~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                          +.+..+..+++++++|+|.||++||| +.|+|||+|||++.+.  +.+.|..+|++||.||+
T Consensus       163 ~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T-~~~gIyA~GDv~~~~~--l~~~A~~~g~~aa~~~~  225 (233)
T d1xdia1         163 VPNTSGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGDCTGLLP--LASVAAMQGRIAMYHAL  225 (233)
T ss_dssp             EECCSSSCTTTTTCCCBTTTBCCCCSSSBC-SSTTEEECSGGGTSCS--CHHHHHHHHHHHHHHHT
T ss_pred             cccccccccchhhhcccCCCcCCcCCCccc-CCCCEEEEEEeCCCch--hHHHHHHHHHHHHHHHc
Confidence                23333445567889999999999998 7999999999998653  68899999999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.78  E-value=5.7e-19  Score=132.64  Aligned_cols=114  Identities=18%  Similarity=0.145  Sum_probs=94.1

Q ss_pred             CCCCCChHHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC
Q 046865          113 DPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK  192 (369)
Q Consensus       113 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~  192 (369)
                      |.+|+.+.  ..+..+.. ....+++++|+|||++|+|+|..|+  ..|.+||++++++++++.+++++++.+++.|+++
T Consensus         2 P~IpG~e~--~~ts~~~~-~l~~p~~v~IiGgG~iG~E~A~~l~--~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~   76 (117)
T d1onfa2           2 PPVKGIEN--TISSDEFF-NIKESKKIGIVGSGYIAVELINVIK--RLGIDSYIFARGNRILRKFDESVINVLENDMKKN   76 (117)
T ss_dssp             CSCTTGGG--CEEHHHHT-TCCCCSEEEEECCSHHHHHHHHHHH--TTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHT
T ss_pred             cccCCHhH--cCchhHHh-ccCCCCEEEEECCchHHHHHHHHHH--hccccceeeehhccccccccHHHHHHHHHHHHhC
Confidence            66777531  12222222 2345899999999999999999998  4699999999999999999999999999999999


Q ss_pred             CcEEEeCceeeeccCC-CCCeEEEcCCCcEEe-ccEEEEcC
Q 046865          193 KVDVKLGQRVNLDSVS-EGSDTYLTSTGDTIK-ADCHFLCT  231 (369)
Q Consensus       193 gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~-~d~vi~a~  231 (369)
                      ||++++++.|++++.. ++.+.+++++|++++ +|.||||.
T Consensus        77 gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          77 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             CCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            9999999999999754 446788999998875 79999984

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.77  E-value=1.8e-19  Score=136.14  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=91.8

Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .........|++++|+|+|++|+|+|..|++  .|++|+++++.++++|.+++++.+.+++.|+++||++++++++++++
T Consensus        13 ~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~   90 (119)
T d3lada2          13 TGALDFQNVPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTE   90 (119)
T ss_dssp             HHHTSCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEE
T ss_pred             hHhhCcccCCCeEEEECCChHHHHHHHHHHH--cCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEE
Confidence            3334444678999999999999999999984  59999999999999999999999999999999999999999999998


Q ss_pred             CCCCCeEEEcCCC---cEEeccEEEEcCC
Q 046865          207 VSEGSDTYLTSTG---DTIKADCHFLCTG  232 (369)
Q Consensus       207 ~~~~~~~v~~~~g---~~i~~d~vi~a~G  232 (369)
                      .+++.+.+++.++   +++++|.||+|+|
T Consensus        91 ~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          91 VKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            8777777776544   5799999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.77  E-value=1.2e-19  Score=137.95  Aligned_cols=107  Identities=11%  Similarity=0.095  Sum_probs=92.4

Q ss_pred             HHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       125 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      +..+.......|++++|+|+|++|+|+|..|+..  |.+||++++++++++.+|+++.+.+++.++++||++++++.+.+
T Consensus        15 ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~--G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~   92 (125)
T d1ojta2          15 DSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVA   92 (125)
T ss_dssp             CHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred             cHHHhhCccccCCeEEEECCCHHHHHHHHHhhcC--CCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEE
Confidence            4444445557799999999999999999999854  99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCeEEEc--CCC--cEEeccEEEEcCCC
Q 046865          205 DSVSEGSDTYLT--STG--DTIKADCHFLCTGK  233 (369)
Q Consensus       205 i~~~~~~~~v~~--~~g--~~i~~d~vi~a~G~  233 (369)
                      ++.+++.+.+.+  .+|  +++++|.|++|+|+
T Consensus        93 v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          93 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            987766665554  333  47999999999996

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.77  E-value=1.1e-18  Score=131.53  Aligned_cols=105  Identities=19%  Similarity=0.252  Sum_probs=90.6

Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhC-CCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~-~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      .+.......|++++|||||++|+|+|..|.... .+.+||++++++++++.+|+++++.+++.|+++||+++++++++++
T Consensus        11 ~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~i   90 (117)
T d1aoga2          11 NEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKV   90 (117)
T ss_dssp             HHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEE
T ss_pred             HHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEE
Confidence            333344466899999999999999998877542 3568999999999999999999999999999999999999999999


Q ss_pred             cCC-CCCeEEEcCCCcEEeccEEEEcC
Q 046865          206 SVS-EGSDTYLTSTGDTIKADCHFLCT  231 (369)
Q Consensus       206 ~~~-~~~~~v~~~~g~~i~~d~vi~a~  231 (369)
                      +.. ++.+.+++++|++++||.||||.
T Consensus        91 e~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          91 ELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             EEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            754 44678899999999999999984

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2e-18  Score=133.80  Aligned_cols=111  Identities=19%  Similarity=0.220  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhh--CCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeC
Q 046865          123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD--FPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~--~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      +.++..+.+....+++++|||||++|+|+|.+|.+.  ..+.+|+++++.+++++ .+|+++++.+.+.++++||+++++
T Consensus        24 ~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~  103 (137)
T d1m6ia2          24 IGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPN  103 (137)
T ss_dssp             HHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECS
T ss_pred             HHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeC
Confidence            455666666667799999999999999999999642  24889999999999997 589999999999999999999999


Q ss_pred             ceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      +.|.+++.+++.+.+++++|+++++|.||||+|.
T Consensus       104 ~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         104 AIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             CCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             CEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence            9999998877788899999999999999999994

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.74  E-value=2.6e-18  Score=146.52  Aligned_cols=66  Identities=24%  Similarity=0.223  Sum_probs=53.9

Q ss_pred             cCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          230 CTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       230 a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      ..|..|++..+.....++.+ ++|+|.||++||| +.|+|||+|||.+.+.  +.+.|..+|++||++|+
T Consensus       166 ~~~~~~~~~~l~~~~~gv~~-~~G~I~vde~~~T-~~~~iyAvGDv~~~~~--l~~~A~~eg~~aa~~i~  231 (238)
T d1aoga1         166 PNGRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRT-NVSNIYAIGDVTNRVM--LTPVAINEAAALVDTVF  231 (238)
T ss_dssp             CCCEEECCGGGCGGGTTCCE-ETTEECCCTTCBC-SSTTEEECGGGGTSCC--CHHHHHHHHHHHHHHHH
T ss_pred             ccccccceeeecccccEEEE-cCCeEEecCCeee-ccCCEEEEEEecCCcc--chhhHHHHHHHHHHHHc
Confidence            44556666666555555555 4799999999999 7999999999998754  68899999999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.73  E-value=5.2e-18  Score=128.67  Aligned_cols=113  Identities=19%  Similarity=0.298  Sum_probs=93.3

Q ss_pred             CCCCCCh----HHHHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHH
Q 046865          113 DPVPKTR----TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDW  188 (369)
Q Consensus       113 ~~~p~~~----~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~  188 (369)
                      |.+|+.+    ...+.+...+.+....+++++|+|||++|+|+|..|++  .|.+||++++++++++ +++++++.+.+.
T Consensus         5 p~ipG~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~l~~-~d~~~~~~~~~~   81 (122)
T d1xhca2           5 PQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFLG-LDEELSNMIKDM   81 (122)
T ss_dssp             CCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSCCTT-CCHHHHHHHHHH
T ss_pred             cCCCCccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhc--ccceEEEEeccccccC-CCHHHHHHHHHH
Confidence            5566542    12355566666666778999999999999999999985  4999999999999886 899999999999


Q ss_pred             HHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC
Q 046865          189 LISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       189 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      |+++||++++++.+.+++.+.    + +.+++++++|.+|||+|.
T Consensus        82 l~~~GV~~~~~~~v~~~~~~~----v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          82 LEETGVKFFLNSELLEANEEG----V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHTTEEEECSCCEEEECSSE----E-EETTEEEECSCEEEECCE
T ss_pred             HHHCCcEEEeCCEEEEEeCCE----E-EeCCCEEECCEEEEEEEe
Confidence            999999999999999886432    2 456779999999999995

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.73  E-value=3.1e-18  Score=129.07  Aligned_cols=103  Identities=22%  Similarity=0.230  Sum_probs=88.4

Q ss_pred             HHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       126 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..+.......|++++|||||++|+|+|..|.+  .|.+||++++++++++.+|+++++.+.+.|+++||++++++.++++
T Consensus        12 s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i   89 (117)
T d1ebda2          12 STGALNLGEVPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGA   89 (117)
T ss_dssp             HHHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEE
T ss_pred             hhHhhChhhcCCeEEEECCCccceeeeeeecc--cccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEE
Confidence            34444555678999999999999999999985  5999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCeEEEc-CCC--cEEeccEEEEc
Q 046865          206 SVSEGSDTYLT-STG--DTIKADCHFLC  230 (369)
Q Consensus       206 ~~~~~~~~v~~-~~g--~~i~~d~vi~a  230 (369)
                      +..++.+.+.+ .+|  +++++|.||++
T Consensus        90 ~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          90 EEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            87666666654 344  47999999974

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.5e-18  Score=130.20  Aligned_cols=102  Identities=17%  Similarity=0.254  Sum_probs=85.9

Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .+.......|++++|||+|++|+|+|..|.+  .|.+||++++.++++|.+++++++.+++.|+++||++++++.+.+++
T Consensus        14 ~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~   91 (122)
T d1v59a2          14 TGALSLKEIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAK   91 (122)
T ss_dssp             HHHTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             HHhhCcccCCCeEEEECCCchHHHHHHHHHh--hCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEE
Confidence            3333444578999999999999999999985  59999999999999999999999999999999999999999999987


Q ss_pred             CCCCC--eEEEcCCC-----cEEeccEEEEc
Q 046865          207 VSEGS--DTYLTSTG-----DTIKADCHFLC  230 (369)
Q Consensus       207 ~~~~~--~~v~~~~g-----~~i~~d~vi~a  230 (369)
                      ..++.  +.+++.++     +++++|.|++|
T Consensus        92 ~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          92 RNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            65544  34444333     47999999986

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.72  E-value=2.8e-17  Score=126.39  Aligned_cols=109  Identities=22%  Similarity=0.327  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeCc
Q 046865          122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      .+.+...+.+....+++++|||||++|+|+|..|++  .+.+|+++++.+++++ .+++++.+.+++.++++||++++++
T Consensus        21 ~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~--~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~   98 (133)
T d1q1ra2          21 TLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGT   98 (133)
T ss_dssp             SHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSC
T ss_pred             CHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHh--hCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCC
Confidence            345555566666778999999999999999999985  4999999999999998 4688999999999999999999999


Q ss_pred             eeeeccCCCC--C-eEEEcCCCcEEeccEEEEcCC
Q 046865          201 RVNLDSVSEG--S-DTYLTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       201 ~v~~i~~~~~--~-~~v~~~~g~~i~~d~vi~a~G  232 (369)
                      .|++++...+  . ..+.+++|+++++|.||+|+|
T Consensus        99 ~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          99 QVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             eEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            9998865432  2 347789999999999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=4.6e-17  Score=134.00  Aligned_cols=159  Identities=22%  Similarity=0.199  Sum_probs=121.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc----------------cc-----CCcchHHHHHHHHHhCCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----------------EF-----IGPKAGDKTLDWLISKKV  194 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l----------------~~-----~~~~~~~~~~~~l~~~gv  194 (369)
                      .++|+|||||++|++.|..+++  .+.++.++++.....                ..     ..+++...+++.+++.|+
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~   82 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT   82 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             cceEEEECCCHHHHHHHHHHHH--cCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcc
Confidence            4689999999999999998884  489999998654210                11     124566667777788899


Q ss_pred             EEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCC-----CCCchhhcccccCCCCCCCCcEEeCC-ceeeccCCC
Q 046865          195 DVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGK-----PVGSDWLKDTILKDSLDTDGMLMVDE-NLRVKGQKN  268 (369)
Q Consensus       195 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~-----~p~~~~l~~~~~~~~~~~~g~i~vd~-~l~~~~~~~  268 (369)
                      ++..+ .|..++..++...+.+. ..+..+|.+++++|.     .|++.++..   +++++++|+|.+|+ +++| +.|+
T Consensus        83 ~i~~~-~V~~~~~~~~~~~v~~~-~~~~~~~~~~~a~g~~~~g~~p~~~~~~~---~veld~~G~i~~~~~~~~T-s~~G  156 (192)
T d1vdca1          83 TIFTE-TVTKVDFSSKPFKLFTD-SKAILADAVILAIGAVAKGHEPATKFLDG---GVELDSDGYVVTKPGTTQT-SVPG  156 (192)
T ss_dssp             EEECC-CCCEEECSSSSEEEECS-SEEEEEEEEEECCCEEECCEEESCGGGTT---SSCBCTTSCBCCCTTSCBC-SSTT
T ss_pred             eeeee-eEEecccccCcEEeccc-ceeeeeeeEEEEeeeeecccCchHHHhcC---ceeecCCCeEEeCCCceEe-cCCC
Confidence            99866 57676655555666554 447899999999985     477776653   34789999999996 6777 7999


Q ss_pred             eEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865          269 IFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       269 i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      |||+|||.+.+. ++...|..+|..||.++.++|.
T Consensus       157 V~a~GDv~~~~~-r~~v~A~g~G~~aA~~~~~yl~  190 (192)
T d1vdca1         157 VFAAGDVQDKKY-RQAITAAGTGCMAALDAEHYLQ  190 (192)
T ss_dssp             EEECGGGGCSSC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeecCCccc-ceEEEEEechHHHHHHHHHHHh
Confidence            999999998653 4678899999999999987764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=9.4e-18  Score=125.88  Aligned_cols=97  Identities=20%  Similarity=0.229  Sum_probs=83.7

Q ss_pred             HHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC
Q 046865          132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS  211 (369)
Q Consensus       132 ~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  211 (369)
                      ....|++++|+|||++|+|+|..|++.  |++||++++.+++++.+++++++.+++.|+++||+++++++|++++  ++.
T Consensus        17 ~~~~p~~vvIiGgG~~G~E~A~~l~~~--g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~   92 (115)
T d1lvla2          17 PKALPQHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYE--NGC   92 (115)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEE--TTE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHhhc--ccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEc--CCe
Confidence            345689999999999999999999854  9999999999999999999999999999999999999999999885  333


Q ss_pred             eEEEcCC--CcEEeccEEEEcCC
Q 046865          212 DTYLTST--GDTIKADCHFLCTG  232 (369)
Q Consensus       212 ~~v~~~~--g~~i~~d~vi~a~G  232 (369)
                      ..+...+  ++++++|.||+|+|
T Consensus        93 ~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          93 LLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEECSSSCCCEECCSCEEECCC
T ss_pred             EEEEEcCCCeEEEEcCEEEEecC
Confidence            3333333  35799999999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.9e-18  Score=127.86  Aligned_cols=99  Identities=19%  Similarity=0.195  Sum_probs=85.0

Q ss_pred             HHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC
Q 046865          132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS  211 (369)
Q Consensus       132 ~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  211 (369)
                      ....|++++|+|||++|+|+|..|++  .|.+||++++++++++.+|+++++.+.+.|+++||++++++.+++++.+++.
T Consensus        18 l~~~pk~vvIvGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g   95 (125)
T d3grsa2          18 LEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSG   95 (125)
T ss_dssp             CCSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTE
T ss_pred             hhhcCCEEEEEcCCccHHHHHHHHhc--CCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe
Confidence            34568999999999999999999984  5999999999999999999999999999999999999999999999776655


Q ss_pred             eEEEc---CCCc------EEeccEEEEcCC
Q 046865          212 DTYLT---STGD------TIKADCHFLCTG  232 (369)
Q Consensus       212 ~~v~~---~~g~------~i~~d~vi~a~G  232 (369)
                      +.+.+   ..|+      .+++|.||||+|
T Consensus        96 ~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          96 LEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            44332   3332      467999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.70  E-value=9.4e-18  Score=127.26  Aligned_cols=104  Identities=17%  Similarity=0.195  Sum_probs=88.4

Q ss_pred             HHHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeec
Q 046865          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLD  205 (369)
Q Consensus       126 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  205 (369)
                      ..........|++++|||+|++|+|+|..|..  .|.+||++++++++++.+++++.+.+.+.|+++||++++++.+.++
T Consensus        15 s~~~l~l~~~p~~~viiG~G~iglE~A~~~~~--~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i   92 (123)
T d1dxla2          15 STGALALSEIPKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGV   92 (123)
T ss_dssp             HHHHTTCSSCCSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEE
T ss_pred             HHHhhCccccCCeEEEEccchHHHHHHHHHHh--cCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEE
Confidence            34444445679999999999999999999985  4999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCeEEE--cC-CC--cEEeccEEEEcC
Q 046865          206 SVSEGSDTYL--TS-TG--DTIKADCHFLCT  231 (369)
Q Consensus       206 ~~~~~~~~v~--~~-~g--~~i~~d~vi~a~  231 (369)
                      +..++++++.  .. +|  +++++|.|++|+
T Consensus        93 ~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          93 DTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             ECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            8776665544  32 33  358999999884

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.3e-16  Score=128.65  Aligned_cols=159  Identities=16%  Similarity=0.205  Sum_probs=117.2

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc-----------cc-----CCcchHHHHHHHHHhCCcEEEe
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----------EF-----IGPKAGDKTLDWLISKKVDVKL  198 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l-----------~~-----~~~~~~~~~~~~l~~~gv~i~~  198 (369)
                      +.++|+|||||++|++.|..++  +.+.+|+++++.+...           +.     .+.++.+.+...+.+.++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~a--r~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAA--RANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF   81 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHH--TTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHH--HcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEec
Confidence            3568999999999999999887  4599999998764311           11     1235666677778889999886


Q ss_pred             CceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC-----chhhcccccCCCCCCCCcEEeCC-----ceeeccCCC
Q 046865          199 GQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG-----SDWLKDTILKDSLDTDGMLMVDE-----NLRVKGQKN  268 (369)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~-----~~~l~~~~~~~~~~~~g~i~vd~-----~l~~~~~~~  268 (369)
                      + .|..+...++...++... .++.++.+++++|..|.     ..++...   +++ ++|+|.+|+     .++| +.|+
T Consensus        82 ~-~V~~~~~~~~~~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~~---~e~-~~g~i~~~~~~~~~~~~T-~v~g  154 (190)
T d1trba1          82 D-HINKVDLQNRPFRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEGQ---LEL-ENGYIKVQSGIHGNATQT-SIPG  154 (190)
T ss_dssp             C-CEEEEECSSSSEEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTTT---SCE-ETTEECCCCSSSSCTTBC-SSTT
T ss_pred             c-eeEEEecCCCcEEEEEee-eeEeeeeeeeecceeeeeecccceeecce---Eec-CCcEEEEecCCccccccc-ccCe
Confidence            5 577776666666666544 47999999999997654     3333221   123 468899985     4577 7999


Q ss_pred             eEEecccCCccccchhHHHHHHHHHHHHHHHHHhh
Q 046865          269 IFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMV  303 (369)
Q Consensus       269 i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  303 (369)
                      |||+|||++.+ .+++..|..+|..||.++.++|.
T Consensus       155 V~aaGDv~~~~-~~q~i~Aag~G~~AA~~a~~yl~  188 (190)
T d1trba1         155 VFAAGDVMDHI-YRQAITSAGTGCMAALDAERYLD  188 (190)
T ss_dssp             EEECGGGGCSS-SCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeEEecCcc-eeEEEEEeccHHHHHHHHHHHHh
Confidence            99999999754 35678899999999999987775

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.68  E-value=3.3e-16  Score=118.62  Aligned_cols=106  Identities=18%  Similarity=0.220  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHH--hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc-cCCcchHHHHHHHHHhCCcEEEeC
Q 046865          123 LNQYQAENQKI--KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       123 ~~~~~~~~~~~--~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~-~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      +.+.....+..  ..+++++|+|+|++|+|+|..|++  .|.+||++++.+++++ .+++++++.+++.++++||+++++
T Consensus        15 ~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~--~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~   92 (123)
T d1nhpa2          15 RQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATG   92 (123)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEES
T ss_pred             HHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhc--cceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeC
Confidence            34444444433  346899999999999999999985  4999999999999997 579999999999999999999999


Q ss_pred             ceeeeccCCCCCeEEEcCCCcEEeccEEEEcC
Q 046865          200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCT  231 (369)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~  231 (369)
                      +.+++++.++ .+...+.+|++++||.||+|.
T Consensus        93 ~~v~~i~~~~-~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          93 ETVERYEGDG-RVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             CCEEEEECSS-BCCEEEESSCEEECSEEEECS
T ss_pred             ceEEEEEcCC-CEEEEEeCCCEEECCEEEEEC
Confidence            9999998654 344446788899999999984

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.67  E-value=2.8e-19  Score=152.22  Aligned_cols=163  Identities=17%  Similarity=0.144  Sum_probs=98.6

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceec-ccccccc--ceEEEeee
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVIN-HTDYLVN--GRIVASPA   84 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~   84 (369)
                      +....++|+|||||+|||+||..|+ +|++|+|+|+++.++..+.......... ....... ....+..  .... ...
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~  122 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLG-EWSYHRDYRETQITKLLKKNK-ESQ  122 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCG-GGGHHHHHHHHHHHHHHTTCT-TCE
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceee-cccccchhHHHHHHHHhhcce-eee
Confidence            4456799999999999999999986 5999999999998886554322111000 0000000 0000000  0000 000


Q ss_pred             eeeecceEEecCCeEEeccEEEEccCCCCCCCCChHHHHHHHHHHHH------HHhcCCeEEEEcCChhHHHHHHHHhhh
Q 046865           85 INITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQ------KIKSARSILIVGGGPTGVELAGEIAVD  158 (369)
Q Consensus        85 ~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~~~~~~~~------~~~~~~~v~vvG~G~~g~e~a~~l~~~  158 (369)
                      .....+.+...+..++.||++|+|||+.+..|...............      .....++++|+|+|++|+|+|.+|++ 
T Consensus       123 ~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~-  201 (233)
T d1djqa3         123 LALGQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEE-  201 (233)
T ss_dssp             EECSCCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTS-
T ss_pred             eecccccccchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHh-
Confidence            11111122222334678999999999987765543322221111110      11346889999999999999999984 


Q ss_pred             CCCCeEEEEEcCccccc
Q 046865          159 FPEKKVTLVHKGSRLLE  175 (369)
Q Consensus       159 ~~~~~v~lv~~~~~~l~  175 (369)
                       .+.+|+++++.+.++.
T Consensus       202 -~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         202 -ANPQIAIPYKRETIAW  217 (233)
T ss_dssp             -SCTTSCCCCCCCCCCT
T ss_pred             -cCCceEEEEecccccc
Confidence             4899999999987754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.66  E-value=2.4e-16  Score=119.45  Aligned_cols=97  Identities=16%  Similarity=0.237  Sum_probs=84.2

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-  212 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-  212 (369)
                      ..+++++|+|||++|+|+|..|+.  .+.+|+++++.+++++.+++++++.+++.++++||++++++.+.+++.+++.. 
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~--~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~   97 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRV   97 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--cchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceE
Confidence            346899999999999999999984  49999999999999999999999999999999999999999999998665432 


Q ss_pred             E-E---EcCCCcEEeccEEEEcCC
Q 046865          213 T-Y---LTSTGDTIKADCHFLCTG  232 (369)
Q Consensus       213 ~-v---~~~~g~~i~~d~vi~a~G  232 (369)
                      . +   ...+++++++|.||+|+|
T Consensus        98 ~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          98 QAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEEEETTEEEEEECSCEEECCC
T ss_pred             EEEEEEeCCCCEEEEcCEEEEEEC
Confidence            1 1   234556899999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.5e-16  Score=118.94  Aligned_cols=103  Identities=16%  Similarity=0.077  Sum_probs=83.2

Q ss_pred             HHHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeecc
Q 046865          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDS  206 (369)
Q Consensus       127 ~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  206 (369)
                      .........|++++|||+|++|+|+|..|++  .|.+||+++++ ++++.+|+++++.+.+.|+++||+|++++.|++++
T Consensus        11 d~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~--lG~~Vtii~~~-~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~   87 (122)
T d1h6va2          11 DDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE   87 (122)
T ss_dssp             HHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-SSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEE
T ss_pred             hHHhCcccCCCeEEEECCCccHHHHHHHHhh--cCCeEEEEEec-hhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            3444445678999999999999999999984  59999999975 78999999999999999999999999999998876


Q ss_pred             CCC----CCeEEEcCC--C-c--EEeccEEEEcCC
Q 046865          207 VSE----GSDTYLTST--G-D--TIKADCHFLCTG  232 (369)
Q Consensus       207 ~~~----~~~~v~~~~--g-~--~i~~d~vi~a~G  232 (369)
                      ..+    ..+.++..+  + +  .+++|.|++|+|
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          88 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            422    234444332  2 2  467999999998

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=1.7e-14  Score=123.70  Aligned_cols=121  Identities=11%  Similarity=0.000  Sum_probs=80.3

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCC--Ce-EEEcCCCcEEeccEEEEcCCCCCCch---------hhcccccC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEG--SD-TYLTSTGDTIKADCHFLCTGKPVGSD---------WLKDTILK  246 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~~g~~i~~d~vi~a~G~~p~~~---------~l~~~~~~  246 (369)
                      .++.+.+.+.+++.||+++++++|++++..++  .+ .+...++++++||.||+|||-.+.+.         +....++.
T Consensus       109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~  188 (253)
T d2gqfa1         109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP  188 (253)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcccc
Confidence            46778888999999999999999998865433  22 23445677999999999999653221         11111111


Q ss_pred             CCC---CCCCcEE---eC-CceeeccCCCeEEecccCCccccc---hhHHHHHHHHHHHHHHH
Q 046865          247 DSL---DTDGMLM---VD-ENLRVKGQKNIFAIGDITDIREIK---QGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       247 ~~~---~~~g~i~---vd-~~l~~~~~~~i~a~GD~~~~~~~~---~~~~A~~~g~~~a~~i~  299 (369)
                      +.-   -..|.+.   +| ..|+++..|++|.+|-+.+.....   --++|...|..+++.|.
T Consensus       189 i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~  251 (253)
T d2gqfa1         189 VIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSIS  251 (253)
T ss_dssp             EEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHh
Confidence            100   0012222   44 358887899999999776643211   23689999999999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.55  E-value=6.6e-15  Score=126.11  Aligned_cols=121  Identities=15%  Similarity=0.211  Sum_probs=80.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EEEcCCCcEEeccEEEEcCCCCCCch---------hhcccccCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TYLTSTGDTIKADCHFLCTGKPVGSD---------WLKDTILKDS  248 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vi~a~G~~p~~~---------~l~~~~~~~~  248 (369)
                      .++.+.+.+.+++.||+++++++|+.+..+++.+ .+.+++|+++++|.||+|+|-...+.         ++...+.  .
T Consensus       110 ~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~--~  187 (251)
T d2i0za1         110 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGH--T  187 (251)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTC--C
T ss_pred             HHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhccccee--e
Confidence            3567788889999999999999999988766544 57788999999999999999753221         1222111  1


Q ss_pred             CCC--CCcEEe---C-CceeeccCCCeEEecccCCcccc---chhHHHHHHHHHHHHHHHHH
Q 046865          249 LDT--DGMLMV---D-ENLRVKGQKNIFAIGDITDIREI---KQGFLAQKHAQVAAKNLKVL  301 (369)
Q Consensus       249 ~~~--~g~i~v---d-~~l~~~~~~~i~a~GD~~~~~~~---~~~~~A~~~g~~~a~~i~~~  301 (369)
                      +.+  .+.+.+   + ..+..+..|++|++|++......   .....|...|++++.++...
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~~~  249 (251)
T d2i0za1         188 ITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGEN  249 (251)
T ss_dssp             EEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            111  011111   1 23444468999999998754221   12357888999999988643

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1e-13  Score=112.78  Aligned_cols=161  Identities=22%  Similarity=0.236  Sum_probs=119.1

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc--ccc--------ccC----CcchHHHHHHHHHhCCcEEEeCceee
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL--------EFI----GPKAGDKTLDWLISKKVDVKLGQRVN  203 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~--~~l--------~~~----~~~~~~~~~~~l~~~gv~i~~~~~v~  203 (369)
                      .|+|||||++|+++|..+.  ..+.+|+++++..  ++.        +.+    .+.+...++...++.+++......+.
T Consensus         3 DViIIGgGpaGl~AAi~aa--r~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSA--RKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSAS   80 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHH--TTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cEEEECcCHHHHHHHHHHH--HcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceee
Confidence            5899999999999998887  4599999999742  111        111    24556666777778888888887776


Q ss_pred             eccCCC---CCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccc
Q 046865          204 LDSVSE---GSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIRE  280 (369)
Q Consensus       204 ~i~~~~---~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~  280 (369)
                      .+....   ........+++++.++.++.++|..++........+  .....|.|.+|+..++ +.|+||++|||.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~g~i~v~~~~~t-~~~gv~a~gd~~~~~~  157 (184)
T d1fl2a1          81 KLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAV--ERNRMGEIIIDAKCET-NVKGVFAAGDCTTVPY  157 (184)
T ss_dssp             EEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTS--CBCTTSCBCCCTTCBC-SSTTEEECSTTBSCSS
T ss_pred             eecccccccceeeeeeecceeeecccccccccccccccccccccc--cccccceeccCCceee-eCCCEEEEeeecCccc
Confidence            554322   233445566678999999999997655444433333  4567799999999998 7999999999997653


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhC
Q 046865          281 IKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       281 ~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                       +....|..+|..+|.++.+.|..
T Consensus       158 -~~~vva~g~G~~aA~~~~~~l~~  180 (184)
T d1fl2a1         158 -KQIIIATGEGAKASLSAFDYLIR  180 (184)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcEEEEECcHHHHHHHHHHHhh
Confidence             45778999999999999887753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5.2e-15  Score=118.71  Aligned_cols=122  Identities=18%  Similarity=0.236  Sum_probs=77.1

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEeeee
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVASPAI   85 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   85 (369)
                      +....++|+|||||||||+||+.|+ +|++|+|+|+.+.+|..+......-...........+....  .++++..++.+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~V  118 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV  118 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEE
Confidence            4456789999999999999999996 69999999999988854321111100000001011111111  14555433221


Q ss_pred             eeecceEEecCCeEEeccEEEEccCCCCCCCCChHHHHHHHHHHHHHHhcCCeEEEEcCChhHHHH
Q 046865           86 NITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVEL  151 (369)
Q Consensus        86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~  151 (369)
                              +.+ ....||.+|+|||+.|..+..+            ....+++++|+|+|.+++++
T Consensus       119 --------t~~-~~~~~d~vilAtG~~~~~~~~p------------g~~~g~~v~vigggd~a~~~  163 (179)
T d1ps9a3         119 --------TAD-QLQAFDETILASGIPNRALAQP------------LIDSGKTVHLIGGCDVAMEL  163 (179)
T ss_dssp             --------CSS-SSCCSSEEEECCCEECCTTHHH------------HHTTTCCEEECGGGTCCSSC
T ss_pred             --------ccc-ccccceeEEEeecCCCcccccc------------hhccCCEEEEECCcHhhhhc
Confidence                    112 2467999999999987765432            12358899999999988776

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=8e-13  Score=110.31  Aligned_cols=150  Identities=22%  Similarity=0.246  Sum_probs=107.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc----------------------------cc---------CC--
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----------------------------EF---------IG--  178 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l----------------------------~~---------~~--  178 (369)
                      .++|||+|+.|+++|..+++  .|.+|+++++++ +.                            +.         ++  
T Consensus         4 DvvVIG~G~aG~~aA~~a~~--~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   80 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAM--YGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE   80 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHH
Confidence            48999999999999999984  599999999853 10                            00         00  


Q ss_pred             ----------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch------hhcc
Q 046865          179 ----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD------WLKD  242 (369)
Q Consensus       179 ----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~------~l~~  242 (369)
                                ..+...++..+++.||++..........   .   ....+++.+.++.+++|||.+|..+      .+..
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~---~---~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l  154 (217)
T d1gesa1          81 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA---K---TLEVNGETITADHILIATGGRPSHPREPANDNINL  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET---T---EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee---e---eecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence                      0112233445677888887765443221   1   1223567899999999999876543      2222


Q ss_pred             cccCCCCCCCCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          243 TILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       243 ~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      ...++.++++|++.+|+++++ +.|+||++||+.....  +++.+..+|+.++.++.
T Consensus       155 ~~~gv~~~~~~~i~~d~~~~t-~~~~i~~iG~g~~g~e--la~~~~~~G~~v~~~~~  208 (217)
T d1gesa1         155 EAAGVKTNEKGYIVVDKYQNT-NIEGIYAVGDNTGAVE--LTPVAVAAGRRLSERLF  208 (217)
T ss_dssp             HHHTCCBCTTSCBCCCTTSBC-SSTTEEECSGGGTSCC--CHHHHHHHHHHHHHHHH
T ss_pred             ccccEEEcCCccEeeCchhcc-CCCcEEEECCCccHHH--HHHHHHHHHHHHHHHHh
Confidence            233557889999999999998 6899999999987654  67889999999998887

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.45  E-value=5.5e-15  Score=130.85  Aligned_cols=108  Identities=12%  Similarity=0.003  Sum_probs=67.7

Q ss_pred             CcEEEeCceeeeccCCCCC------eEEE--c---CCCcEEeccEEEEcCCCCCCch--------hhcccccCC--CCCC
Q 046865          193 KVDVKLGQRVNLDSVSEGS------DTYL--T---STGDTIKADCHFLCTGKPVGSD--------WLKDTILKD--SLDT  251 (369)
Q Consensus       193 gv~i~~~~~v~~i~~~~~~------~~v~--~---~~g~~i~~d~vi~a~G~~p~~~--------~l~~~~~~~--~~~~  251 (369)
                      +.+|+++++|++++.+.+.      ..+.  .   .+++.+++|.||+|++......        .+....+..  ..+.
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            6789999999888654321      1122  1   2345789999999986422100        000000000  0011


Q ss_pred             CCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          252 DGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       252 ~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      ++.+.+++.+++ +.|+||++||+.+.+   ....|+.+|+.||+.|.++|+.
T Consensus       323 ~~~~~~~~~~~t-~~pglf~aGd~~~g~---~~~~A~~~G~~aA~~i~~~L~~  371 (373)
T d1seza1         323 DSVLDAIDKMEK-NLPGLFYAGNHRGGL---SVGKALSSGCNAADLVISYLES  371 (373)
T ss_dssp             HHHHHHHHHHHH-HSTTEEECCSSSSCS---SHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CcEeecccccCC-CCCCEEEEecCCCch---hHHHHHHHHHHHHHHHHHHHhc
Confidence            122334556776 689999999998754   3578999999999999998865

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.43  E-value=2.1e-14  Score=128.46  Aligned_cols=115  Identities=15%  Similarity=0.069  Sum_probs=69.5

Q ss_pred             HHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc----CCCcEEeccEEEEcCCCCC--------CchhhcccccCCCCCC
Q 046865          184 KTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT----STGDTIKADCHFLCTGKPV--------GSDWLKDTILKDSLDT  251 (369)
Q Consensus       184 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~----~~g~~i~~d~vi~a~G~~p--------~~~~l~~~~~~~~~~~  251 (369)
                      .....+++.|++++++++|++++.+++.+++..    .++++++||.||+|++...        ..+......+.....+
T Consensus       240 l~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~  319 (370)
T d2iida1         240 LPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTP  319 (370)
T ss_dssp             HHHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCT
T ss_pred             HHHHHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCc
Confidence            344455778999999999999988777766553    3346899999999986321        1000000000000000


Q ss_pred             CCcEEeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHH
Q 046865          252 DGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV  300 (369)
Q Consensus       252 ~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~  300 (369)
                      .......+.+.. ...+||++||++..+.. ....|+.+|..||.+|..
T Consensus       320 ~~~~~~~~~~~~-~~g~v~~aGd~~~~~~~-~~~~a~~sG~~aA~~i~~  366 (370)
T d2iida1         320 YQFQHFSDPLTA-SQGRIYFAGEYTAQAHG-WIDSTIKSGLRAARDVNL  366 (370)
T ss_dssp             THHHHHHHHHHC-CBTTEEECSGGGSSSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhc-ccCCEEEecccccCCCc-ccHHHHHHHHHHHHHHHh
Confidence            001112223333 35679999998765431 246789999999999964

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.42  E-value=9.3e-15  Score=126.78  Aligned_cols=115  Identities=17%  Similarity=-0.020  Sum_probs=77.8

Q ss_pred             HHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhccc--ccCC----CCCCCCcEEeC----
Q 046865          189 LISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT--ILKD----SLDTDGMLMVD----  258 (369)
Q Consensus       189 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~--~~~~----~~~~~g~i~vd----  258 (369)
                      .+..+.++..++.+..++..++.+.+++.+|+.+++|.++++.........+...  .++.    ..+..++..++    
T Consensus       220 ~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~  299 (347)
T d1b5qa1         220 GKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEY  299 (347)
T ss_dssp             CCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHH
T ss_pred             hhhcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccch
Confidence            3456788999999999988778888999999999999999987542111000000  0000    01112222232    


Q ss_pred             CceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          259 ENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       259 ~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      +.+++ +.++||++||++....+..++-|+.+|+.+|+.|++.++.
T Consensus       300 ~~~~~-~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~  344 (347)
T d1b5qa1         300 DQLRA-PVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  344 (347)
T ss_dssp             HHHHC-CBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccc-ccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            23455 5799999999987655556788999999999999988764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.40  E-value=6.3e-12  Score=109.00  Aligned_cols=78  Identities=19%  Similarity=0.109  Sum_probs=58.8

Q ss_pred             EEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhccc
Q 046865          164 VTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT  243 (369)
Q Consensus       164 v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~  243 (369)
                      ..++.+....+  .+..+...+.+.+++.|++++++++|.+++.+++.+.|.+++| ++.+|.||+|+|... ..++...
T Consensus       137 ~~~~~~~~g~~--~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s-~~l~~~l  212 (281)
T d2gf3a1         137 NAIFEPNSGVL--FSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN-SKLLSKL  212 (281)
T ss_dssp             EEEEETTCEEE--EHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH-HHHGGGG
T ss_pred             eeeeccccccc--cccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcc-hhhHHhc
Confidence            34454443322  2347788889999999999999999999998888888988887 699999999999763 3444444


Q ss_pred             cc
Q 046865          244 IL  245 (369)
Q Consensus       244 ~~  245 (369)
                      ++
T Consensus       213 g~  214 (281)
T d2gf3a1         213 NL  214 (281)
T ss_dssp             TE
T ss_pred             CC
Confidence            43

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.7e-13  Score=121.89  Aligned_cols=122  Identities=16%  Similarity=0.043  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhh-c-------ccccCCCCCCC
Q 046865          181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL-K-------DTILKDSLDTD  252 (369)
Q Consensus       181 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l-~-------~~~~~~~~~~~  252 (369)
                      ......+.+++.|++++++++|.+|..+++.+.+++.+|+++++|.||+|++...-.... .       ...+. .....
T Consensus       209 ~~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~-~~~~~  287 (383)
T d2v5za1         209 SGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMIT-RVFPP  287 (383)
T ss_dssp             THHHHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTT-SCCCT
T ss_pred             hhHHHHHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHH-HhccC
Confidence            344455556778999999999999998888889999999999999999998642111100 0       00000 01111


Q ss_pred             CcE-EeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhC
Q 046865          253 GML-MVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG  304 (369)
Q Consensus       253 g~i-~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g  304 (369)
                      +.. .....+.. ...+|+.+|+.......-...-|+.+|+.+|..|+..+..
T Consensus       288 ~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~~~~~~  339 (383)
T d2v5za1         288 GILTQYGRVLRQ-PVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGK  339 (383)
T ss_dssp             THHHHHGGGTTC-CBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CccchhhhhhcC-CcCceEeccccccccCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            111 11122222 3567999997654332223456889999999999876643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=5.9e-14  Score=117.36  Aligned_cols=149  Identities=20%  Similarity=0.310  Sum_probs=89.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccc------------------cc-cC-------Ccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR------------------AM-VE-------PSFGE   64 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~------------------~~-~~-------~~~~~   64 (369)
                      ++||||||||||||++||..|+ .|.+|+|||+++ +|..|....                  .. ..       ..+..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~   79 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW   79 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccH
Confidence            4799999999999999999987 499999999965 443221100                  00 00       00000


Q ss_pred             cceecc------------cccc--ccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCChHH---HHHHHH
Q 046865           65 RSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE---RLNQYQ  127 (369)
Q Consensus        65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~~~---~~~~~~  127 (369)
                      ..+...            ..++  .++++............+.. +++.+.++++++|||+.|.+|.++..   .+....
T Consensus        80 ~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~-~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~g  158 (217)
T d1gesa1          80 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGGRPSHPREPANDNINLEAAG  158 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE-TTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecC-CCceeeeeeeeeecCccccCCCCCCcCCccccccc
Confidence            000000            0001  24566666555555544433 67889999999999999887754311   111110


Q ss_pred             -----H----HHH-HHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeE
Q 046865          128 -----A----ENQ-KIKSARSILIVGGGPTGVELAGEIAVDFPEKKV  164 (369)
Q Consensus       128 -----~----~~~-~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v  164 (369)
                           .    ... ....++++.++|+|.+|+|+|..+...  |.+|
T Consensus       159 v~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~--G~~v  203 (217)
T d1gesa1         159 VKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAA--GRRL  203 (217)
T ss_dssp             CCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHH--HHHH
T ss_pred             EEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHH--HHHH
Confidence                 0    000 012346899999999999999977642  5555

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.37  E-value=1.7e-13  Score=108.33  Aligned_cols=133  Identities=10%  Similarity=-0.079  Sum_probs=97.2

Q ss_pred             EccCCCCC----CCCChHH--HHHHHHHHHHHHhcCCe-EEEE--cCChhHHHHHHHHhhhCCCCeEEEEEcCccccccC
Q 046865          107 IATGHKDP----VPKTRTE--RLNQYQAENQKIKSARS-ILIV--GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI  177 (369)
Q Consensus       107 iAtG~~~~----~p~~~~~--~~~~~~~~~~~~~~~~~-v~vv--G~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~  177 (369)
                      -|||+.|.    +|+.+..  .+.+..+.......+.+ ++|+  |||++|+|+|..|++  .|++||++++.+++++.+
T Consensus         3 ~atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~--~G~~Vtlv~~~~~~~~~~   80 (156)
T d1djqa2           3 NTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGVHLANYMH   80 (156)
T ss_dssp             CSSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESSCTTTHHH
T ss_pred             cCCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHH--cCCeEEEEecCCcccccc
Confidence            37898864    5655432  22244444444444454 4444  999999999999985  499999999999999988


Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhccccc
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTIL  245 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~  245 (369)
                      ++.....+.+.|+++||++++++.+.+++.+  .+.+  .+.....++.++.++|..|+........+
T Consensus        81 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~l--~~~~~~~~~~v~~~~g~~~~~~~~~~~~l  144 (156)
T d1djqa2          81 FTLEYPNMMRRLHELHVEELGDHFCSRIEPG--RMEI--YNIWGDGSKRTYRGPGVSPRDANTSHRWI  144 (156)
T ss_dssp             HTTCHHHHHHHHHHTTCEEEETEEEEEEETT--EEEE--EETTCSCSCCCCCCTTSCSSCCCCCCEEE
T ss_pred             chhHHHHHHHHHhhccceEEeccEEEEecCc--ceEE--EeeeccccceeeeeeEEEecccCCccCcE
Confidence            9999999999999999999999999988743  2223  23333456788888888887766555443

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.34  E-value=1.5e-12  Score=111.67  Aligned_cols=58  Identities=24%  Similarity=0.383  Sum_probs=42.6

Q ss_pred             CcEEeccEEEEcCCCCC-----CchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCc
Q 046865          219 GDTIKADCHFLCTGKPV-----GSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDI  278 (369)
Q Consensus       219 g~~i~~d~vi~a~G~~p-----~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~  278 (369)
                      ++++++|.+|+|||.+|     +.+.+..+..++ +++++.+.+|+..++ ...++|++||++..
T Consensus       136 ~~~i~a~~iiIATGs~P~~~~~~~~~~~l~~~~i-~ts~~~~~~d~~~~t-~Vig~gaiGdv~~~  198 (259)
T d1onfa1         136 EEILEGRNILIAVGNKPVGRSPDTENLKLEKLNV-ETNNNYIVVDENQRT-SVNNIYAVGDCCMV  198 (259)
T ss_dssp             ----CBSSEEECCCCCBCCBCCTTTTSSCTTTTC-CBSSSCEEECTTCBC-SSSSEEECSTTEEE
T ss_pred             eEEEeeeeEEEecCCCCcccccccccccccccee-eecccccccccCCce-eEeeEEEEEEeeeh
Confidence            45799999999999998     455554444443 356788999998888 69999999999854

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.31  E-value=5.4e-14  Score=123.78  Aligned_cols=115  Identities=13%  Similarity=-0.012  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcC-CC--cEEeccEEEEcCCCCCCchhhcccccCC-----CCCCC
Q 046865          181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTS-TG--DTIKADCHFLCTGKPVGSDWLKDTILKD-----SLDTD  252 (369)
Q Consensus       181 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g--~~i~~d~vi~a~G~~p~~~~l~~~~~~~-----~~~~~  252 (369)
                      +...+.+..++.|++|+++++|++|+.+++.+++++. ++  +++++|.||+|+|......++.......     .....
T Consensus       221 ~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~  300 (347)
T d2ivda1         221 LQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNL  300 (347)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBT
T ss_pred             hHHHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceec
Confidence            4444555556668999999999999887776666553 33  4789999999998532222222110000     11112


Q ss_pred             CcE---EeCCceeeccCCCeEEecccCCccccchhHHHHHHHHHHHHHHH
Q 046865          253 GML---MVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       253 g~i---~vd~~l~~~~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~  299 (369)
                      |..   ...+... ++.|++|++||..+...   ...|+++|+.+|+.|.
T Consensus       301 ~~~~~~~~~~~~~-~~~p~~~~~G~~~~g~~---~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         301 GHLERVAAIDAAL-QRLPGLHLIGNAYKGVG---LNDCIRNAAQLADALV  346 (347)
T ss_dssp             THHHHHHHHHHHH-HTSTTEEECSTTTSCCS---HHHHHHHHHHHHHHHC
T ss_pred             Ccccceecccccc-cCCCCEEEecccccCCC---HHHHHHHHHHHHHHhh
Confidence            211   1111122 36899999999976543   3567889999998874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.30  E-value=2.7e-12  Score=110.99  Aligned_cols=65  Identities=11%  Similarity=-0.084  Sum_probs=53.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhccccc
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTIL  245 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~  245 (369)
                      ..+...+.+.++++|++|+.+++|+.++.+++...|++++| ++.||.||+|+|... ..++...++
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s-~~l~~~~G~  215 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS-GMFFKQLGL  215 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT-HHHHHHTTC
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH-HHHHhhcCC
Confidence            36778888889999999999999999988777788888877 799999999999763 445554443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.27  E-value=1.1e-11  Score=109.82  Aligned_cols=122  Identities=15%  Similarity=0.110  Sum_probs=72.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCC-CC-eEE--EcCCCc--EEeccEEEEcCCC-CCCchhhc----------
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE-GS-DTY--LTSTGD--TIKADCHFLCTGK-PVGSDWLK----------  241 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v--~~~~g~--~i~~d~vi~a~G~-~p~~~~l~----------  241 (369)
                      ..+.+.+.+.+.++|++|++++++.++..++ +. ..+  ...++.  .+.++.||+|||- ..|.+++.          
T Consensus       152 ~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~  231 (322)
T d1d4ca2         152 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFK  231 (322)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCC
T ss_pred             HHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCccccccc
Confidence            4567788888889999999999999876543 32 223  323332  5899999999983 22222111          


Q ss_pred             ------------------------ccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcc--ccch----hHHHHHHH
Q 046865          242 ------------------------DTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIR--EIKQ----GFLAQKHA  291 (369)
Q Consensus       242 ------------------------~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~--~~~~----~~~A~~~g  291 (369)
                                              .+..++.++..+.+.. +..++ ..|++||+|+|++.-  .-.+    ...+.-.|
T Consensus       232 ~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~~~-~~~~~-~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v~g  309 (322)
T d1d4ca2         232 ATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEVKS-EKTGK-PITGLYAAGEVTGGVHGANRLGGNAISDIVTYG  309 (322)
T ss_dssp             BCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEEEB-TTTSS-EEEEEEECGGGBCSSSTTSCCTTHHHHHHHHHH
T ss_pred             ccCCCCccCHHHHHHHHcCCcceecccceEEecCceEEEE-CCCCC-EeCceEEchhhcCCccccccchhhHHHHHHHHH
Confidence                                    0000112233343332 22333 479999999997431  1112    23455568


Q ss_pred             HHHHHHHHHHh
Q 046865          292 QVAAKNLKVLM  302 (369)
Q Consensus       292 ~~~a~~i~~~~  302 (369)
                      ++|+++++.+.
T Consensus       310 ~~ag~~aa~~~  320 (322)
T d1d4ca2         310 RIAGASAAKFA  320 (322)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88888887654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.23  E-value=7.9e-12  Score=100.95  Aligned_cols=105  Identities=29%  Similarity=0.326  Sum_probs=68.7

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCcccccceecccc-ccccceEEEeeeeeeec
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTD-YLVNGRIVASPAINITE   89 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   89 (369)
                      ++|||||||++|+.+|..|++   ..+|+|||+++.+...+..................... ....+.+..+.....+.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   82 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDP   82 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECCT
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEeeee
Confidence            699999999999999999863   47899999998765432221111111111111111111 11245666676666654


Q ss_pred             c--eEEecCCeEEeccEEEEccCCCCCCCCC
Q 046865           90 N--EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (369)
Q Consensus        90 ~--~v~~~~g~~~~~d~lviAtG~~~~~p~~  118 (369)
                      .  .+.+.+++++.||+|++|||..+..+.+
T Consensus        83 ~~~~~~~~~~~~i~~D~li~atG~~~~~~~i  113 (186)
T d1fcda1          83 DKKLVKTAGGAEFGYDRCVVAPGIELIYDKI  113 (186)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCEEECCTTS
T ss_pred             ccceeecccceeeccceEEEEeccccchhhh
Confidence            3  6777888999999999999999876654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=7.5e-12  Score=106.71  Aligned_cols=57  Identities=9%  Similarity=-0.175  Sum_probs=44.8

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCC--CCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSE--GSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +.+...+.+|++++||.||....+-|
T Consensus       236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~  294 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFP  294 (297)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhcc
Confidence            3678889999999999999999999986543  33444567888999999998644444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.20  E-value=5.5e-11  Score=97.10  Aligned_cols=159  Identities=14%  Similarity=0.184  Sum_probs=105.8

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCcccccc---------CCcchHHHHHHHHHhCCcEEEeCceeee
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLEF---------IGPKAGDKTLDWLISKKVDVKLGQRVNL  204 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~~l~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v~~  204 (369)
                      .+++|+|||+|++|+++|..|++.  |. +|+++++++.+...         ............+...+..+.....+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~--G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE   80 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST
T ss_pred             CCCEEEEECChHHHHHHHHHHHHC--CCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEecc
Confidence            578999999999999999999853  75 69999999876431         2334445555566677888888776643


Q ss_pred             ccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch--hhcccccCCCCCCCCcEEeCCc-eeeccCCCeEEecccCCcccc
Q 046865          205 DSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD--WLKDTILKDSLDTDGMLMVDEN-LRVKGQKNIFAIGDITDIREI  281 (369)
Q Consensus       205 i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~--~l~~~~~~~~~~~~g~i~vd~~-l~~~~~~~i~a~GD~~~~~~~  281 (369)
                      ...       ...+..+..++.+++++|..+...  ..............+....+.. +++ +.+.||+.||+++.+. 
T Consensus        81 ~~~-------~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~g~vigg~~-  151 (196)
T d1gtea4          81 NEI-------TLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMAN-  151 (196)
T ss_dssp             TSB-------CHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCC-
T ss_pred             cee-------eeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCC-CcccccccccccCCcc-
Confidence            211       111222345788899988653322  1111111112334455555544 666 7999999999987654 


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhCC
Q 046865          282 KQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       282 ~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                       ++..|..+|+.+|..+.+.+.+.
T Consensus       152 -~av~a~~~g~~~a~~v~r~~~~~  174 (196)
T d1gtea4         152 -TTVESVNDGKQASWYIHKYIQAQ  174 (196)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHhhhehhHhhccHhh
Confidence             67788889999998888766553

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.08  E-value=1.8e-10  Score=102.26  Aligned_cols=121  Identities=12%  Similarity=-0.030  Sum_probs=76.7

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe---EE-EcCCCc--EEeccEEEEcCCCCCC-------c-----hhh
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD---TY-LTSTGD--TIKADCHFLCTGKPVG-------S-----DWL  240 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~---~v-~~~~g~--~i~~d~vi~a~G~~p~-------~-----~~l  240 (369)
                      ..+...+.+.+++.|++|+.++.+.++..+++.+   .+ ...+|+  ++.++.||+|||--..       .     +.+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~  237 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT  237 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHH
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhh
Confidence            3566777888888999999999998776555532   12 235665  5789999999984321       1     000


Q ss_pred             cc-cccC-CCCCCCCcEEeCCceeeccCCCeEEecccCCcccc-------chhHHHHHHHHHHHHHHHH
Q 046865          241 KD-TILK-DSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI-------KQGFLAQKHAQVAAKNLKV  300 (369)
Q Consensus       241 ~~-~~~~-~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~-------~~~~~A~~~g~~~a~~i~~  300 (369)
                      .. ...+ ..+.+-++|++++..++ +.|++|++||+......       .+...+...+..+++++..
T Consensus       238 ~~~~~~G~~~l~~~~~iq~~~~~~t-~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~  305 (336)
T d2bs2a2         238 AIALETGIAQLGNMGGIRTDYRGEA-KLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE  305 (336)
T ss_dssp             HHHHTTSSSCEECCCEEECCTTSBC-SSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccccceeechhhcc-cCCcceeccccccccccccccchhhccchhhhhcchhHHHHHh
Confidence            00 0111 13445678999999998 69999999997643210       1223444555666666553

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.07  E-value=1.3e-10  Score=102.52  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=34.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ...+||||||+|++||+||++|+ .|.+|+||||.+..+.
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG   56 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG   56 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            44789999999999999999986 5999999999876653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.1e-10  Score=93.89  Aligned_cols=107  Identities=19%  Similarity=0.259  Sum_probs=68.6

Q ss_pred             CcceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCc-------------c---cccceecccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPS-------------F---GERSVINHTD   72 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~   72 (369)
                      .++++||||||++|+.+|.+|++   ..+|++|++++++.+....+.......             .   .........+
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   82 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence            46899999999999999999963   467999999877654322221110000             0   0000000000


Q ss_pred             ---------c--cccceEEEe-eeeeeec--ceEEecCCeEEeccEEEEccCCCCCCCCC
Q 046865           73 ---------Y--LVNGRIVAS-PAINITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (369)
Q Consensus        73 ---------~--~~~~~~~~~-~~~~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~p~~  118 (369)
                               .  ..++++..+ ++..++.  ++|.+++|+++.||+||+|||+.|..+.+
T Consensus        83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l  142 (213)
T d1m6ia1          83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVEL  142 (213)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTT
T ss_pred             hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhh
Confidence                     0  124666554 5777764  48999999999999999999988665543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.05  E-value=2.4e-10  Score=99.99  Aligned_cols=66  Identities=21%  Similarity=0.057  Sum_probs=52.2

Q ss_pred             CcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EEcCCCcEEeccEEEEcCCCCCCchhhccccc
Q 046865          178 GPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YLTSTGDTIKADCHFLCTGKPVGSDWLKDTIL  245 (369)
Q Consensus       178 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~  245 (369)
                      +..+...+.+.+++.|++++.+++|++++.+++.++ |.+++| +++||.||+|+|... ..++...+.
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s-~~l~~~~g~  213 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG-AKIGAMIGM  213 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH-HHHHHTTTC
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhH-HHHHHHcCC
Confidence            347788888899999999999999999988777544 677666 799999999999763 445554444

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.03  E-value=7.5e-11  Score=103.52  Aligned_cols=39  Identities=33%  Similarity=0.304  Sum_probs=34.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~   49 (369)
                      ...+||||||||++|++||++|+ +|.+|+||||.+..+.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG   53 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG   53 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            34689999999999999999986 5999999999886653

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=2.4e-10  Score=94.17  Aligned_cols=100  Identities=19%  Similarity=0.157  Sum_probs=63.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC-Cccccccccc----------cccCCccc----c-cceeccccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE-YFEITWASLR----------AMVEPSFG----E-RSVINHTDYLV   75 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~-~~~~~~~~~~----------~~~~~~~~----~-~~~~~~~~~~~   75 (369)
                      .|||||||||+||++||..++ .|.+++||+++- ..+..+....          ...+..-.    . ...........
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~   81 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR   81 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence            599999999999999998876 599999999862 2221111000          00000000    0 00001111223


Q ss_pred             cceEEEeeeeeeec--c---eEEecCCeEEeccEEEEccCCC
Q 046865           76 NGRIVASPAINITE--N---EVLTAEGRRVVYDYLVIATGHK  112 (369)
Q Consensus        76 ~~~~~~~~~~~~~~--~---~v~~~~g~~~~~d~lviAtG~~  112 (369)
                      +..++++++..+-.  +   .|.+.+|.++.++.+||+||.-
T Consensus        82 nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          82 PLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             CHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            67888888877632  2   4678889999999999999985

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=3.6e-09  Score=95.20  Aligned_cols=121  Identities=15%  Similarity=0.043  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhCCcEEEeCceeeeccCCCCCe-EE-E---------------cCCCcEEeccEEEEcCCCCCCch--hhcc
Q 046865          182 GDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-TY-L---------------TSTGDTIKADCHFLCTGKPVGSD--WLKD  242 (369)
Q Consensus       182 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v-~---------------~~~g~~i~~d~vi~a~G~~p~~~--~l~~  242 (369)
                      ...+.+..+..|+++..+..+.++..+++.. .. .               ...+....++..+++.|.+....  ++..
T Consensus       144 ~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~  223 (380)
T d2gmha1         144 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKK  223 (380)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhh
Confidence            3444555566666666666665544332211 11 0               11122456788899998764331  2221


Q ss_pred             cccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc---chhHHHHHHHHHHHHHHHHHhhCC
Q 046865          243 TILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI---KQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       243 ~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~---~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                      ..+.......+.+.   .+.....|++..+||+++.-.+   +-.+.|+.+|+.||+.+...+...
T Consensus       224 ~~l~~~~~~~~G~~---sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~  286 (380)
T d2gmha1         224 FDLRANCEPQGGFQ---SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSE  286 (380)
T ss_dssp             TTTTTTSCCCCGGG---GCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhccccccccccc---cccccccCCeeEEeccccccchhhcCCeeeeeccHHHHHHHHHHHHHcC
Confidence            11211122222211   1111236899999999987443   335789999999999999888643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=3.2e-10  Score=89.61  Aligned_cols=117  Identities=15%  Similarity=0.256  Sum_probs=80.0

Q ss_pred             CCCCCChHHHHHHHHHHH-HHHhcCCeEEEEcCChhHHHHHHHHhhhCCCC-----------------------------
Q 046865          113 DPVPKTRTERLNQYQAEN-QKIKSARSILIVGGGPTGVELAGEIAVDFPEK-----------------------------  162 (369)
Q Consensus       113 ~~~p~~~~~~~~~~~~~~-~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~-----------------------------  162 (369)
                      |.+|+.+...+.+..+.+ .....+++++|||||++|+|+|..+.+  .|.                             
T Consensus         5 p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (162)
T d1ps9a2           5 PPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQ--PGESTSQNIAGFCNEWGIDSSLQQAGGLSPQG   82 (162)
T ss_dssp             CCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTC--CSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTC
T ss_pred             CCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHH--cCCccceeHhhhhhhccCCcchhhhccccccc
Confidence            455665544433333322 234567999999999999999998874  232                             


Q ss_pred             --------eEEEEEcCc-cccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCC-cEEeccEEEEcCC
Q 046865          163 --------KVTLVHKGS-RLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG-DTIKADCHFLCTG  232 (369)
Q Consensus       163 --------~v~lv~~~~-~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~d~vi~a~G  232 (369)
                              +++.+.... .+...++..........++..||++++++.+.+++  ++++.+...+. ++++||.||+|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2          83 MQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             CCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCC
T ss_pred             ceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCC
Confidence                    344444433 34445666777888899999999999999999885  33444443322 3589999999999


Q ss_pred             C
Q 046865          233 K  233 (369)
Q Consensus       233 ~  233 (369)
                      .
T Consensus       161 q  161 (162)
T d1ps9a2         161 Q  161 (162)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.99  E-value=4.1e-10  Score=83.98  Aligned_cols=91  Identities=19%  Similarity=0.338  Sum_probs=62.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE   89 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (369)
                      ..++++|||||+.|+.+|..|+ +|.+|+|||+++.+...      ..++.........+.  -.+++++.+ .+..+..
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~------~~~~~~~~~~~~~l~--~~GV~i~~~~~v~~~~~  100 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR------AAPATLADFVARYHA--AQGVDLRFERSVTGSVD  100 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------TSCHHHHHHHHHHHH--TTTCEEEESCCEEEEET
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc------cCCHHHHHHHHHHHH--HCCcEEEeCCEEEEEeC
Confidence            3579999999999999999986 69999999998864311      111111100000011  126776544 4555666


Q ss_pred             ceEEecCCeEEeccEEEEccC
Q 046865           90 NEVLTAEGRRVVYDYLVIATG  110 (369)
Q Consensus        90 ~~v~~~~g~~~~~d~lviAtG  110 (369)
                      ..+.+.+|+++.+|.+++|+|
T Consensus       101 ~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2         101 GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TEEEETTSCEEECSEEEECSC
T ss_pred             CEEEECCCCEEECCEEEEeeC
Confidence            688899999999999999998

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.99  E-value=4.2e-10  Score=96.21  Aligned_cols=108  Identities=20%  Similarity=0.295  Sum_probs=70.4

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc------------------ccc----cCCccccc--
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------------------RAM----VEPSFGER--   65 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~------------------~~~----~~~~~~~~--   65 (369)
                      .+.||+||||||++|+.+|..++ .|.+|++||+.+.+|..+...                  ..+    ..+.....  
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~  119 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV  119 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccc
Confidence            45799999999999999999886 599999999988776421100                  000    00000000  


Q ss_pred             ---ceecc----cc------------ccccceEEEeeeeeeecceEEecCCeEEeccEEEEccCCCCCCCCCh
Q 046865           66 ---SVINH----TD------------YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR  119 (369)
Q Consensus        66 ---~~~~~----~~------------~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~~p~~~  119 (369)
                         .....    ..            ......++.+.+..++.+++.. +++++++|++++|+|.+|..|+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~-~g~~i~ad~viiAtG~~P~~~~i~  191 (261)
T d1mo9a1         120 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA-AGKVFKAKNLILAVGAGPGTLDVP  191 (261)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEE-TTEEEEBSCEEECCCEECCCCCST
T ss_pred             cHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeeccccc-ccceEeeeeeeeccCCCCCcCccc
Confidence               00000    00            0001235567777788877766 678999999999999999988764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=4.9e-10  Score=88.86  Aligned_cols=99  Identities=27%  Similarity=0.325  Sum_probs=64.3

Q ss_pred             eEEEECCChHHHHHHHHcccCCcEEEEcCCCCccccccccccccCCccccccee-cccccc--ccceEEEe-eeeeeecc
Q 046865           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERSVI-NHTDYL--VNGRIVAS-PAINITEN   90 (369)
Q Consensus        15 ~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~-~~~~~~~~   90 (369)
                      +|||||||++|+.+|..|+++.+|+|+++++...+....+.............. ...+++  .++++..+ .+..++..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~   81 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRG   81 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEETT
T ss_pred             eEEEECCcHHHHHHHHHHHcCCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccccc
Confidence            799999999999999999989999999998866544333322222211111111 111111  24555533 45566543


Q ss_pred             -eEEecCCeEEeccEEEEccCCCC
Q 046865           91 -EVLTAEGRRVVYDYLVIATGHKD  113 (369)
Q Consensus        91 -~v~~~~g~~~~~d~lviAtG~~~  113 (369)
                       .+...++.++.||++++|+|..|
T Consensus        82 ~~~~~~~~~~i~~D~li~a~G~~~  105 (167)
T d1xhca1          82 RKVVITEKGEVPYDTLVLATGAPN  105 (167)
T ss_dssp             TTEEEESSCEEECSEEEECCCEEC
T ss_pred             cccccccccccccceeEEEEEecC
Confidence             45666777899999999999865

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=3.6e-09  Score=79.27  Aligned_cols=99  Identities=13%  Similarity=0.161  Sum_probs=78.7

Q ss_pred             HHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCC
Q 046865          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSE  209 (369)
Q Consensus       130 ~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  209 (369)
                      ...+...++++|||+|.+++|.|.+|.+  ...+|++++|++.+-  .++...+.+++..+..++.+++++.+.++..++
T Consensus        21 D~~~~~~k~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~   96 (126)
T d1trba2          21 DGFFYRNQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ   96 (126)
T ss_dssp             HGGGGTTSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECS
T ss_pred             chHHhCCCEEEEECCCHHHHHHHHHHhh--cCCcEEEEeeccccc--chhHHHHHHHHhhcccceeEecceEEEEEECCC
Confidence            4456788999999999999999999985  489999999998652  355677777877788899999999999988765


Q ss_pred             CCe-EEEcCC---C---cEEeccEEEEcCC
Q 046865          210 GSD-TYLTST---G---DTIKADCHFLCTG  232 (369)
Q Consensus       210 ~~~-~v~~~~---g---~~i~~d~vi~a~G  232 (369)
                      ..+ .+++.+   +   +++++|-++++.|
T Consensus        97 ~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          97 MGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            433 344433   2   3699999999987

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=3.7e-09  Score=84.06  Aligned_cols=88  Identities=23%  Similarity=0.224  Sum_probs=69.6

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-----------CCcchHHHHHHHHHhCCcEEEeCcee
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-----------~~~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      ..+++|+|||+|+.|++.|..|++  .|.+|+++++.+.+...           ...++.+.+.+.+++.||++++|+.|
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~--~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~V  118 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV  118 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh--hccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEE
Confidence            457999999999999999999984  59999999998866321           12356677888889999999999887


Q ss_pred             eeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCc
Q 046865          203 NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGS  237 (369)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~  237 (369)
                      +.-             . ...+|.||+|||..|..
T Consensus       119 t~~-------------~-~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         119 TAD-------------Q-LQAFDETILASGIPNRA  139 (179)
T ss_dssp             CSS-------------S-SCCSSEEEECCCEECCT
T ss_pred             ccc-------------c-cccceeEEEeecCCCcc
Confidence            521             1 24679999999987754

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=2.3e-10  Score=100.24  Aligned_cols=92  Identities=20%  Similarity=0.135  Sum_probs=60.8

Q ss_pred             HHHHHHHhCCcEEEeCceeeeccCCCC-------Ce-EEE---cCCCc--EEeccEEEEcCCCCCC-------chh----
Q 046865          184 KTLDWLISKKVDVKLGQRVNLDSVSEG-------SD-TYL---TSTGD--TIKADCHFLCTGKPVG-------SDW----  239 (369)
Q Consensus       184 ~~~~~l~~~gv~i~~~~~v~~i~~~~~-------~~-~v~---~~~g~--~i~~d~vi~a~G~~p~-------~~~----  239 (369)
                      .+.+.+++.+++++.++.+..+..+++       .+ .+.   ..+++  .+.++.||+|||-...       .+.    
T Consensus       143 ~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGD  222 (305)
T d1chua2         143 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGD  222 (305)
T ss_dssp             CHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCH
T ss_pred             HHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecc
Confidence            345667788999999999887654332       11 222   23443  5789999999984221       111    


Q ss_pred             -hcc-cccCCCCCCCCcEEeCCceeeccCCCeEEecccC
Q 046865          240 -LKD-TILKDSLDTDGMLMVDENLRVKGQKNIFAIGDIT  276 (369)
Q Consensus       240 -l~~-~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~  276 (369)
                       +.. ...+..+..-++|++|++.+| +.|++||+|+++
T Consensus       223 G~~mA~~aGa~l~~m~~iq~~~~g~t-~~~g~~a~G~~~  260 (305)
T d1chua2         223 GIAMAWRAGCRVANCGGVMVDDHGRT-DVEGLYAIGEVS  260 (305)
T ss_dssp             HHHHHHHTTCCEECSCEEECCTTCBC-SSBTEEECGGGE
T ss_pred             cEeeccccceeeEecceeEECCcccC-CCCCceecccEE
Confidence             000 113345667789999999998 799999999974

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.89  E-value=2e-09  Score=86.70  Aligned_cols=106  Identities=18%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CC--cEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINI   87 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~--~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   87 (369)
                      ++.+|+|||||++|+.+|..|++ |.  .+++++++....+....+...+.................+++++.+ .+..+
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i   81 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   81 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEE
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccc
Confidence            35679999999999999999864 54  4555555544333222222211111111111111111225666544 45555


Q ss_pred             ecc--eEEecCCeEEeccEEEEccCCCCCCCC
Q 046865           88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (369)
Q Consensus        88 ~~~--~v~~~~g~~~~~d~lviAtG~~~~~p~  117 (369)
                      +..  .+.+.+|+++.||.+++|+|..|..+.
T Consensus        82 ~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~  113 (183)
T d1d7ya1          82 DPQAHTVALSDGRTLPYGTLVLATGAAPRAVL  113 (183)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCEEECCEE
T ss_pred             ccccceeEecCCcEeeeeeEEEEEEEEccccc
Confidence            543  788889999999999999999886543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=6.7e-10  Score=82.27  Aligned_cols=90  Identities=20%  Similarity=0.273  Sum_probs=59.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEee-eeeeec
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVASP-AINITE   89 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   89 (369)
                      .+++|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+...       .++.........+.+  .+++++.+. +..+..
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-------~d~~~~~~~~~~l~~--~GV~~~~~~~v~~i~~   90 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-------FDPMISETLVEVMNA--EGPQLHTNAIPKAVVK   90 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------SCHHHHHHHHHHHHH--HSCEEECSCCEEEEEE
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-------cchhhHHHHHHHHHH--CCCEEEeCCEEEEEEE
Confidence            4579999999999999999886 59999999998865311       111111100001111  256665443 334432


Q ss_pred             c-----eEEecCCeEEeccEEEEccC
Q 046865           90 N-----EVLTAEGRRVVYDYLVIATG  110 (369)
Q Consensus        90 ~-----~v~~~~g~~~~~d~lviAtG  110 (369)
                      .     ++.+++|+++.+|.+++|||
T Consensus        91 ~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          91 NTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             CTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             cCCcEEEEEECCCCEEEcCEEEEecC
Confidence            1     57788899999999999998

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.87  E-value=9.1e-09  Score=91.04  Aligned_cols=99  Identities=20%  Similarity=0.164  Sum_probs=74.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc----------------------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------------------------------------  175 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~----------------------------------------  175 (369)
                      -|+|+|||+|++|+-+|..|+++..+.+|+++++++.+..                                        
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            4789999999999999999876544569999999976520                                        


Q ss_pred             ------------------------cCC--cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCC---Cc---EEe
Q 046865          176 ------------------------FIG--PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTST---GD---TIK  223 (369)
Q Consensus       176 ------------------------~~~--~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~---~i~  223 (369)
                                              .+.  +++.+.+....+..+..|++++.|++++.+++...|++.+   ++   +..
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~  163 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI  163 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEE
Confidence                                    000  1455666677777788999999999998877766665533   22   456


Q ss_pred             ccEEEEcCCCC
Q 046865          224 ADCHFLCTGKP  234 (369)
Q Consensus       224 ~d~vi~a~G~~  234 (369)
                      +|.||+|+|..
T Consensus       164 ~d~VI~AtG~~  174 (335)
T d2gv8a1         164 FDAVSICNGHY  174 (335)
T ss_dssp             ESEEEECCCSS
T ss_pred             eeEEEEccccc
Confidence            99999999974

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.85  E-value=3.3e-09  Score=92.10  Aligned_cols=40  Identities=23%  Similarity=0.437  Sum_probs=36.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      ...||+|||||++||++|++|+ .|.+|+|+|+++.+|..|
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW   46 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW   46 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccc
Confidence            4689999999999999999997 599999999999888665

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.85  E-value=1.3e-08  Score=88.21  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=105.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc---------------------cC----------------Cc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------FI----------------GP  179 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~---------------------~~----------------~~  179 (369)
                      -+|+|||+|++|+-+|..|.+  .|.+++++++.+.+..                     ..                .+
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~--~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~   85 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   85 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCEEEECccHHHHHHHHHHHh--CCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccc
Confidence            469999999999999999985  4889999998754310                     00                12


Q ss_pred             chHHHHHHHHHhCCc--EEEeCceeeeccCC--CCCeEEEcCCCcEEeccEEEEcCCC--CCCchhhcccc-cC---CCC
Q 046865          180 KAGDKTLDWLISKKV--DVKLGQRVNLDSVS--EGSDTYLTSTGDTIKADCHFLCTGK--PVGSDWLKDTI-LK---DSL  249 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~--~~~~~v~~~~g~~i~~d~vi~a~G~--~p~~~~l~~~~-~~---~~~  249 (369)
                      ++.+++++..++.++  .|.++++|++++.+  .+.-.|++.+++++++|.+|+|+|.  .|..+.+.... .+   ..+
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~g~~l  165 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVAL  165 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGGGCBH
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccccccCCCeee
Confidence            566778888888888  59999999988743  3456788889999999999999996  33333221111 00   000


Q ss_pred             ---CCCCcEEeCCceeeccCCCeEEec-ccCCccccchhHHHHHHHHHHHHHHHHHh
Q 046865          250 ---DTDGMLMVDENLRVKGQKNIFAIG-DITDIREIKQGFLAQKHAQVAAKNLKVLM  302 (369)
Q Consensus       250 ---~~~g~i~vd~~l~~~~~~~i~a~G-D~~~~~~~~~~~~A~~~g~~~a~~i~~~~  302 (369)
                         -++| ...---+.+.+.||.|.++ =-+..........+..|+.++++-|....
T Consensus       166 ~~~W~~~-p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~~~~  221 (298)
T d1w4xa1         166 KEKWAAG-PRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMF  221 (298)
T ss_dssp             HHHTTTS-CCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhchhh-HHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence               0111 1111124556899999974 33322211233556778888888776543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=2.5e-09  Score=86.61  Aligned_cols=104  Identities=16%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccc--cccccC--Ccccccceec-ccccc--ccceEEEe
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS--LRAMVE--PSFGERSVIN-HTDYL--VNGRIVAS   82 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~--~~~~~~--~~~~~~~~~~-~~~~~--~~~~~~~~   82 (369)
                      .+++||+||||||+||+||..|+ .|.+|+|||+++..+.....  +..+..  .......+.. .....  .++.+..+
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD   82 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc
Confidence            34689999999999999999986 49999999987654421111  000000  0000000100 00000  13455555


Q ss_pred             eeeeeecc---eEEecCCeEEeccEEEEccCCCCC
Q 046865           83 PAINITEN---EVLTAEGRRVVYDYLVIATGHKDP  114 (369)
Q Consensus        83 ~~~~~~~~---~v~~~~g~~~~~d~lviAtG~~~~  114 (369)
                      .+..++.+   .........+..+.+++++|..++
T Consensus        83 ~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          83 HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             eeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence            66665533   222334567889999999998754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.81  E-value=3.2e-09  Score=94.05  Aligned_cols=40  Identities=28%  Similarity=0.468  Sum_probs=33.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCCCccccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFEITW   51 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~~~~~~~   51 (369)
                      ..++|+|||||++||+||+.|. .+  .+|+|+||++.+|+.|
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W   45 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVW   45 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcc
Confidence            3578999999999999999885 33  6999999998877544

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=2e-09  Score=95.13  Aligned_cols=37  Identities=24%  Similarity=0.222  Sum_probs=33.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      +.+||+|||+|+|||+||.+++ +|.+|+|+||.+..+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~g   43 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR   43 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            4689999999999999999986 699999999987655

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.7e-08  Score=75.48  Aligned_cols=98  Identities=24%  Similarity=0.273  Sum_probs=74.2

Q ss_pred             HHHHHHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceeeecc
Q 046865          128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVNLDS  206 (369)
Q Consensus       128 ~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~  206 (369)
                      .........++++|+|+|.+++|.|.+|.+  ...+|++++|++.+      ...+.+.+.+++ .+|++++++++.++.
T Consensus        22 ~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~--~a~~V~li~r~~~~------~~~~~~~~~~~~~~~I~v~~~~~v~~i~   93 (126)
T d1fl2a2          22 HCDGPLFKGKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPEM------KADQVLQDKLRSLKNVDIILNAQTTEVK   93 (126)
T ss_dssp             HHHGGGGBTCEEEEECCSHHHHHHHHHHHT--TBSEEEEECSSSSC------CSCHHHHHHHHTCTTEEEESSEEEEEEE
T ss_pred             ecChhhcCCceEEEEeCCHHHHHHHHhhhc--cCCceEEEeccccc------ccccccccccccccceeEEcCcceEEEE
Confidence            334566789999999999999999999985  38899999999865      233445555554 569999999999988


Q ss_pred             CCCCCe-EEEc---CCC--cEEeccEEEEcCCC
Q 046865          207 VSEGSD-TYLT---STG--DTIKADCHFLCTGK  233 (369)
Q Consensus       207 ~~~~~~-~v~~---~~g--~~i~~d~vi~a~G~  233 (369)
                      .+++.+ .+++   .+|  +++++|-++++.|.
T Consensus        94 G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          94 GDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             ESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             ccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            764433 3443   234  36999999999883

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.79  E-value=5.3e-09  Score=79.25  Aligned_cols=91  Identities=24%  Similarity=0.300  Sum_probs=59.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE   89 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (369)
                      ..++|+|||||+.|+.+|..|+ .|.+|+|+|+++.+...      ...+.... ...... ...+++++.+ .+..++.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~------~~~~~~~~-~~~~~~-~~~GV~i~~~~~v~~i~~  105 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER------VTAPPVSA-FYEHLH-REAGVDIRTGTQVCGFEM  105 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT------TSCHHHHH-HHHHHH-HHHTCEEECSCCEEEEEE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc------ccchhhhh-hhhhcc-cccccEEEeCCeEEEEEE
Confidence            4679999999999999999986 59999999998865311      11111100 000000 0125666543 3344432


Q ss_pred             -------ceEEecCCeEEeccEEEEccC
Q 046865           90 -------NEVLTAEGRRVVYDYLVIATG  110 (369)
Q Consensus        90 -------~~v~~~~g~~~~~d~lviAtG  110 (369)
                             ..+.+.+|+++++|.+++|+|
T Consensus       106 ~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         106 STDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             eCCCceEEEEECCCCCEEECCEEEEeeC
Confidence                   147788999999999999998

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=2.2e-09  Score=94.12  Aligned_cols=93  Identities=18%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             HHHHHHHhCCcEEEeCceeeeccCCCCCeE-E---EcCCCc--EEeccEEEEcCCC-----CCCc--hhhcc------cc
Q 046865          184 KTLDWLISKKVDVKLGQRVNLDSVSEGSDT-Y---LTSTGD--TIKADCHFLCTGK-----PVGS--DWLKD------TI  244 (369)
Q Consensus       184 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v---~~~~g~--~i~~d~vi~a~G~-----~p~~--~~l~~------~~  244 (369)
                      .+.+..+..+|+++.++.+.++..+++.+. +   ...+|+  .+.++.||+|||-     .+++  +....      ..
T Consensus       140 ~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~  219 (311)
T d1kf6a2         140 LFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALS  219 (311)
T ss_dssp             HHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHT
T ss_pred             HHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHh
Confidence            344455556899999999998766665332 2   245675  4679999999983     2221  11111      01


Q ss_pred             cCCCCCCCCcEEeCCceeeccCCCeEEecccCC
Q 046865          245 LKDSLDTDGMLMVDENLRVKGQKNIFAIGDITD  277 (369)
Q Consensus       245 ~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~  277 (369)
                      .+..+.+-.+|+++++..+ ..+++|+.+++..
T Consensus       220 aGa~l~dme~iq~~p~~~~-~~~~~~~~~~~~~  251 (311)
T d1kf6a2         220 HGVPLRDMGGIETDQNCET-RIKGLFAVGECSS  251 (311)
T ss_dssp             TTCCEESCCEEECCTTSBC-SSBTEEECGGGEE
T ss_pred             cccceeecccccccccchh-cccCCCcCcceee
Confidence            2223434567888888877 6899999999764

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.76  E-value=6.8e-09  Score=84.58  Aligned_cols=102  Identities=19%  Similarity=0.270  Sum_probs=63.6

Q ss_pred             ceEEEECCChHHHHHHHHccc---CCcEEEEcCCCCccccccccccccCCccccc-ce-ecccccc--ccceEE-Eeeee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGER-SV-INHTDYL--VNGRIV-ASPAI   85 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~---g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~-~~~~~   85 (369)
                      ++|+|||||++|+.+|..|++   +.+|+++|++++..+....+..++....... .. ....+.+  .++++. ...+.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~   80 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence            479999999999999998863   6799999998877554333333322222111 11 1111111  256664 44666


Q ss_pred             eeecc--eEEe---cCC--eEEeccEEEEccCCCCCC
Q 046865           86 NITEN--EVLT---AEG--RRVVYDYLVIATGHKDPV  115 (369)
Q Consensus        86 ~~~~~--~v~~---~~g--~~~~~d~lviAtG~~~~~  115 (369)
                      .++..  .+..   .+|  .++.||++++|+|+.+..
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             eEeeccccceeeecccccccccccceeeEeecceeec
Confidence            77643  4432   333  368999999999988653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.76  E-value=4.1e-09  Score=77.79  Aligned_cols=89  Identities=18%  Similarity=0.296  Sum_probs=56.3

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEe-eeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVAS-PAIN   86 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~   86 (369)
                      ..+.+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+...       .++....    ...+.+  .+++++.+ ++..
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-------~d~~~~~----~l~~~l~~~gV~i~~~~~V~~   87 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-------YDSELTA----PVAESLKKLGIALHLGHSVEG   87 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-------SCHHHHH----HHHHHHHHHTCEEETTCEEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-------ccchhHH----HHHHHHHhhcceEEcCcEEEE
Confidence            34579999999999999999987 59999999998865311       1111110    111111  14565433 3455


Q ss_pred             eecceEE--ecC--CeEEeccEEEEccC
Q 046865           87 ITENEVL--TAE--GRRVVYDYLVIATG  110 (369)
Q Consensus        87 ~~~~~v~--~~~--g~~~~~d~lviAtG  110 (369)
                      ++.....  ..+  ++++.+|.+++|+|
T Consensus        88 i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          88 YENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             EcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            5444222  222  35799999999998

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.74  E-value=9.4e-10  Score=92.06  Aligned_cols=36  Identities=25%  Similarity=0.255  Sum_probs=32.1

Q ss_pred             ceEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEI   49 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~   49 (369)
                      ++|+|||||||||+||..|+   .+++|+|+|+.+.+|.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            59999999999999999885   3789999999988764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.73  E-value=5.3e-09  Score=78.03  Aligned_cols=88  Identities=17%  Similarity=0.192  Sum_probs=59.2

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeecc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITEN   90 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (369)
                      .++++|||||+.|+.+|..|+ .|.+|+|||+++.+..        +++.........+.+  .+++++.+ .+..++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--------~d~~~~~~~~~~l~~--~GV~~~~~~~v~~~~~~  101 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--------LDEELSNMIKDMLEE--TGVKFFLNSELLEANEE  101 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--------CCHHHHHHHHHHHHH--TTEEEECSCCEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--------CCHHHHHHHHHHHHH--CCcEEEeCCEEEEEeCC
Confidence            468999999999999999986 5999999999876531        111111110001111  26777654 45556555


Q ss_pred             eEEecCCeEEeccEEEEccCC
Q 046865           91 EVLTAEGRRVVYDYLVIATGH  111 (369)
Q Consensus        91 ~v~~~~g~~~~~d~lviAtG~  111 (369)
                      .+ +.++..+.+|.+++|+|.
T Consensus       102 ~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         102 GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             EE-EETTEEEECSCEEEECCE
T ss_pred             EE-EeCCCEEECCEEEEEEEe
Confidence            54 447788999999999994

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.68  E-value=3.2e-07  Score=81.38  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=31.8

Q ss_pred             CcceEEEECCChHHHHHHHHcc-----cCCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-----~g~~V~lie~~~~~~   48 (369)
                      ..+||||||+|+|||+||.+|+     +|.+|+||||.+..+
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            3689999999999999998874     489999999987544

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.67  E-value=1.1e-08  Score=84.79  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ..||||||||||||++||..++ .|.+|+|||+...
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            3699999999999999999886 5999999999764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.66  E-value=1.8e-08  Score=74.60  Aligned_cols=90  Identities=20%  Similarity=0.319  Sum_probs=57.1

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEe-eee
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVAS-PAI   85 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~   85 (369)
                      ...+.+++|||||+.|+.+|..|+ .|.+|+++++++.+...       .++...    ....+.+  .++++..+ .+.
T Consensus        19 ~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-------~d~ei~----~~l~~~l~~~Gv~i~~~~~v~   87 (119)
T d3lada2          19 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-------VDEQVA----KEAQKILTKQGLKILLGARVT   87 (119)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-------SCHHHH----HHHHHHHHHTTEEEEETCEEE
T ss_pred             ccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-------ccchhH----HHHHHHHHhcCceeecCcEEE
Confidence            345689999999999999999886 59999999998764311       111111    1111111  24555544 234


Q ss_pred             eeecc----eEEecCC---eEEeccEEEEccC
Q 046865           86 NITEN----EVLTAEG---RRVVYDYLVIATG  110 (369)
Q Consensus        86 ~~~~~----~v~~~~g---~~~~~d~lviAtG  110 (369)
                      .+...    ++...++   +++.+|++++|+|
T Consensus        88 ~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          88 GTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            44322    3444333   5799999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.64  E-value=2.2e-08  Score=81.00  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccccc---ccccC--Ccccc----ccee-ccccc--cccce
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RAMVE--PSFGE----RSVI-NHTDY--LVNGR   78 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~---~~~~~--~~~~~----~~~~-~~~~~--~~~~~   78 (369)
                      .++||+||||||+|++||..|+ .|.+++|+|+...........   .....  ..+..    ..+. .+.+.  .-+++
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~   83 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   83 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence            4689999999999999999886 599999999876433211110   00000  01110    0010 00000  01456


Q ss_pred             EEEeeeeeeecc---eEEecCCeEEeccEEEEccCCC
Q 046865           79 IVASPAINITEN---EVLTAEGRRVVYDYLVIATGHK  112 (369)
Q Consensus        79 ~~~~~~~~~~~~---~v~~~~g~~~~~d~lviAtG~~  112 (369)
                      +..+.+..++..   .....+.....+|.+++++|..
T Consensus        84 i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          84 IFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAV  120 (192)
T ss_dssp             EECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred             eeeeeEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence            666666666532   2233345678899999999964

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.6e-08  Score=75.76  Aligned_cols=90  Identities=20%  Similarity=0.275  Sum_probs=59.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-----cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeee
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAIN   86 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   86 (369)
                      .++++|||||+.|+.+|..|.     .|.+|++|++++.+...      .+++.........+.  -.+++++.+ .+..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~------~~~~~~~~~~~~~l~--~~GV~~~~~~~V~~  108 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK------ILPEYLSNWTMEKVR--REGVKVMPNAIVQS  108 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT------TSCHHHHHHHHHHHH--TTTCEEECSCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc------cCCHHHHHHHHHHHH--hCCcEEEeCCEEEE
Confidence            468999999999999998773     38999999998764311      111111100000011  125677654 3444


Q ss_pred             eecc----eEEecCCeEEeccEEEEccC
Q 046865           87 ITEN----EVLTAEGRRVVYDYLVIATG  110 (369)
Q Consensus        87 ~~~~----~v~~~~g~~~~~d~lviAtG  110 (369)
                      ++..    .+.+++|+++.+|.+++|+|
T Consensus       109 i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         109 VGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             EEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             EEecCCEEEEEECCCCEEECCEEEEeec
Confidence            5432    68888999999999999998

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.62  E-value=6.8e-08  Score=72.29  Aligned_cols=92  Identities=20%  Similarity=0.220  Sum_probs=68.5

Q ss_pred             HHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHH-HhCCcEEEeCceeeeccCCCC
Q 046865          132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWL-ISKKVDVKLGQRVNLDSVSEG  210 (369)
Q Consensus       132 ~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~  210 (369)
                      .+.+.++|+|+|+|.+++|.|.+|++  ...+|++++|++.+-      ..+.+.+.+ +..+|++++++.+.++..++.
T Consensus        30 ~~frgk~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~~r------a~~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~  101 (130)
T d1vdca2          30 PIFRNKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDAFR------ASKIMQQRALSNPKIDVIWNSSVVEAYGDGE  101 (130)
T ss_dssp             GGGTTSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSSSSCC------SCHHHHHHHHTCTTEEEECSEEEEEEEESSS
T ss_pred             HHhCCCEEEEEcCchHHHHHHHHHhC--CCCcEEEEEeccccc------cchhhhhccccCCceEEEeccEEEEEEccCC
Confidence            36789999999999999999999984  479999999998762      234444444 445799999999999876543


Q ss_pred             --Ce-EEEc---CCC--cEEeccEEEEcC
Q 046865          211 --SD-TYLT---STG--DTIKADCHFLCT  231 (369)
Q Consensus       211 --~~-~v~~---~~g--~~i~~d~vi~a~  231 (369)
                        .+ .+.+   .+|  +++++|-+++++
T Consensus       102 ~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2         102 RDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             cccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence              22 2322   334  479999999874

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.62  E-value=1.5e-08  Score=74.92  Aligned_cols=89  Identities=20%  Similarity=0.261  Sum_probs=59.1

Q ss_pred             CCcceEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEe-e
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVAS-P   83 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~   83 (369)
                      ..+++++|||||+.|+.+|..+.    .|.+|+++|+.+.+..       ..++...    ....+.+  .+++++.+ .
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-------~~d~~~~----~~~~~~l~~~GI~v~~~~~   84 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-------GFDSELR----KQLTEQLRANGINVRTHEN   84 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-------TSCHHHH----HHHHHHHHHTTEEEEETCC
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc-------cccchhh----HHHHHHHhhCcEEEEcCCE
Confidence            34579999999999999996543    3899999999875431       1111111    1111111  25666544 3


Q ss_pred             eeeeecc-----eEEecCCeEEeccEEEEccC
Q 046865           84 AINITEN-----EVLTAEGRRVVYDYLVIATG  110 (369)
Q Consensus        84 ~~~~~~~-----~v~~~~g~~~~~d~lviAtG  110 (369)
                      +..+...     .+.+++|.++.+|.+++|+|
T Consensus        85 v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          85 PAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             EEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            4555422     57888999999999999998

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.60  E-value=3.1e-08  Score=84.14  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=31.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ...+|+|||||++|+++|..|+ +|++|+|+||++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3579999999999999999996 5999999999754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=4.6e-09  Score=88.05  Aligned_cols=175  Identities=14%  Similarity=0.135  Sum_probs=87.8

Q ss_pred             cceEEEECCChHHHHHHHHccc-C-------CcEEEEcCCCCccccccccccccCCcccc-ccee-ccccc--cccceEE
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-S-------ADVTLIDPKEYFEITWASLRAMVEPSFGE-RSVI-NHTDY--LVNGRIV   80 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g-------~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~--~~~~~~~   80 (369)
                      +++|+|||||||||+||+.|.+ |       ++|+|+|+.+.+|..+.   ..+.+.... .... ....+  ..++++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~---~gi~p~~~~~~~~~~~~~~~~~~~g~~~~   78 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR---SGVAPDHPKIKSISKQFEKTAEDPRFRFF   78 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH---HTSCTTCTGGGGGHHHHHHHHTSTTEEEE
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee---eccCcccccchhhhhhhhhhhccCCceEE
Confidence            5799999999999999999853 4       68999999998885431   111111111 1111 11111  1244444


Q ss_pred             EeeeeeeecceEEecCCeEEeccEEEEccCCCCC---CCCChHHHH-------H------HHHHHHHHHhcCCeEEEEcC
Q 046865           81 ASPAINITENEVLTAEGRRVVYDYLVIATGHKDP---VPKTRTERL-------N------QYQAENQKIKSARSILIVGG  144 (369)
Q Consensus        81 ~~~~~~~~~~~v~~~~g~~~~~d~lviAtG~~~~---~p~~~~~~~-------~------~~~~~~~~~~~~~~v~vvG~  144 (369)
                      .+.....+   +.. +.....||.+++|||+.+.   .|+......       .      ............++.+|+|+
T Consensus        79 ~~~~v~~~---~~~-~~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~  154 (239)
T d1lqta2          79 GNVVVGEH---VQP-GELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTN  154 (239)
T ss_dssp             ESCCBTTT---BCH-HHHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHH
T ss_pred             EEEEeccc---cch-hhhhccccceeeecCCCccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCC
Confidence            43221111   111 1112469999999998732   222110000       0      00000001123567778888


Q ss_pred             ChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCc
Q 046865          145 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       145 G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      +..+++++..+.... +...    .... .............+.+.++++++....
T Consensus       155 g~~a~d~a~~~v~vi-g~g~----~~~~-~~~~~~~~~~~~~~~l~~~~v~~v~~~  204 (239)
T d1lqta2         155 KKDAQDTVDTLIKNL-GNAK----EGAE-CKSFPEDHADQVADWLAARQPKLVTSA  204 (239)
T ss_dssp             HHHHHHHHHHHHHHH-HHHH----HTTC-SCCC--CHHHHHHHHHHHHCTTCEEHH
T ss_pred             CchHHHHHHHHHhhc-cCCc----cccc-cccccccchhHHHHHHHhcCCCccCcc
Confidence            999998887544210 1000    0000 111122445556666777788776543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.57  E-value=4.6e-08  Score=72.81  Aligned_cols=88  Identities=22%  Similarity=0.234  Sum_probs=56.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceecccccc--ccceEEEe-eeeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYL--VNGRIVAS-PAINI   87 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~   87 (369)
                      ..++|+|||||+.|+.+|..|+ .|.+|+|||+.+.+...      ..++....    ...+++  .+++++.+ .+..+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~------~~d~~~~~----~~~~~l~~~gv~~~~~~~v~~i   98 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV------YLDKEFTD----VLTEEMEANNITIATGETVERY   98 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------TCCHHHHH----HHHHHHHTTTEEEEESCCEEEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCccccc------ccchhhHH----HHHHHhhcCCeEEEeCceEEEE
Confidence            3579999999999999999886 59999999998754211      11111110    011111  25666544 34444


Q ss_pred             ecc---eEEecCCeEEeccEEEEcc
Q 046865           88 TEN---EVLTAEGRRVVYDYLVIAT  109 (369)
Q Consensus        88 ~~~---~v~~~~g~~~~~d~lviAt  109 (369)
                      ...   .....+++++++|.+++|.
T Consensus        99 ~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          99 EGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             ECSSBCCEEEESSCEEECSEEEECS
T ss_pred             EcCCCEEEEEeCCCEEECCEEEEEC
Confidence            332   3446688899999999873

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.54  E-value=6.9e-09  Score=84.20  Aligned_cols=38  Identities=24%  Similarity=0.423  Sum_probs=33.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCCCcccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEIT   50 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~~~~~~   50 (369)
                      +++|+|||||++||+||..|+ .|+ +|+|+||++.++..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~   43 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL   43 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccch
Confidence            579999999999999999997 588 59999999987643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.6e-08  Score=88.22  Aligned_cols=41  Identities=37%  Similarity=0.622  Sum_probs=36.6

Q ss_pred             CCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccc
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~   50 (369)
                      +.++.+|||||||++||+||+.|+ +|++|+|+|+++.+|+.
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr   43 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR   43 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCccc
Confidence            456789999999999999999997 59999999999998853

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=4e-08  Score=85.26  Aligned_cols=39  Identities=18%  Similarity=0.361  Sum_probs=35.4

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      ++||||||||++|++||++|+ +|.+|+|+|+++++|+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~   40 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccce
Confidence            479999999999999999997 599999999999998654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.50  E-value=2.6e-07  Score=71.26  Aligned_cols=94  Identities=18%  Similarity=0.159  Sum_probs=63.3

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe-E
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD-T  213 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~  213 (369)
                      ..++|+|||||.+|+|+|..+.+ .....|++++|.+..-.    .....-...+...+++++.+..+.++..+++.. .
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r-~GA~~V~vi~rr~~~~~----~a~~~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~  118 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALR-CGARRVFLVFRKGFVNI----RAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVA  118 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHH-TTCSEEEEECSSCGGGC----CSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHH-cCCcceeEEEeCChhhh----ccchhheeecccccceeEeccccEEEEecCCceEE
Confidence            35789999999999999988764 33467999998765322    222334445566889999888777665443321 1


Q ss_pred             EE------cCCC---------cEEeccEEEEcCCC
Q 046865          214 YL------TSTG---------DTIKADCHFLCTGK  233 (369)
Q Consensus       214 v~------~~~g---------~~i~~d~vi~a~G~  233 (369)
                      +.      .++|         .+++||.||+|.|.
T Consensus       119 v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         119 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            11      1222         26899999999983

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=8.8e-08  Score=79.90  Aligned_cols=33  Identities=36%  Similarity=0.495  Sum_probs=27.9

Q ss_pred             ceEEEECCChHHHHHHHHcc----cCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~   46 (369)
                      .+|+||||||||++||.+++    ++.+|+|||++..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            58999999999999998663    3678999998653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.47  E-value=8.8e-08  Score=70.51  Aligned_cols=89  Identities=13%  Similarity=0.203  Sum_probs=56.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeeec
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINITE   89 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (369)
                      ..++|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+.-       ..++.........+.+  .+++++.+ .+..+..
T Consensus        21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-------~~d~~~~~~~~~~l~~--~gV~i~~~~~v~~i~~   91 (117)
T d1onfa2          21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-------KFDESVINVLENDMKK--NNINIVTFADVVEIKK   91 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-------TSCHHHHHHHHHHHHH--TTCEEECSCCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHhccccceeeehhccccc-------cccHHHHHHHHHHHHh--CCCEEEECCEEEEEEE
Confidence            3579999999999999999986 5999999999876431       1111111100001111  25666543 3444431


Q ss_pred             ---c--eEEecCCeEE-eccEEEEcc
Q 046865           90 ---N--EVLTAEGRRV-VYDYLVIAT  109 (369)
Q Consensus        90 ---~--~v~~~~g~~~-~~d~lviAt  109 (369)
                         .  ++.+.+|+.+ .||.+++|.
T Consensus        92 ~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          92 VSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             SSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             cCCCeEEEEECCCCEEEeCCEEEEeC
Confidence               1  5778888877 589999883

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.46  E-value=1.7e-07  Score=74.95  Aligned_cols=107  Identities=25%  Similarity=0.337  Sum_probs=59.9

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCccccc--cccccccC-Ccccccce-ecccccc--ccceEEEe-e
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW--ASLRAMVE-PSFGERSV-INHTDYL--VNGRIVAS-P   83 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~~~~--~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~~-~   83 (369)
                      .+.||||||||++|+.+|..|++ |.++++++..+....++  ..+..... ........ .......  ....+... .
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            35799999999999999999974 77766665544322211  11111111 00000000 0000000  11222222 2


Q ss_pred             eeeee--cceEEecCCeEEeccEEEEccCCCCCCCCC
Q 046865           84 AINIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (369)
Q Consensus        84 ~~~~~--~~~v~~~~g~~~~~d~lviAtG~~~~~p~~  118 (369)
                      ...++  ...+...++.++.+|.+++++|..|..|..
T Consensus        82 ~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~  118 (185)
T d1q1ra1          82 VTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNC  118 (185)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECC
T ss_pred             eeeecccccEEEeeceeEEEeeeeeeeeecccCCCCc
Confidence            22333  336777888899999999999998877765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.46  E-value=1.3e-07  Score=69.62  Aligned_cols=89  Identities=19%  Similarity=0.249  Sum_probs=57.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc----cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeee
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAIN   86 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   86 (369)
                      ...+++|||||+.|+.+|..++    ++.+|+|||+.+.+..       ..++.........+++  .+++++.+ .+..
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-------~~d~~~~~~l~~~l~~--~GV~v~~~~~v~~   89 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-------GFDHTLREELTKQLTA--NGIQILTKENPAK   89 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-------TSCHHHHHHHHHHHHH--TTCEEEESCCEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc-------ccchHHHHHHHHHHHh--cCcEEEcCCEEEE
Confidence            4579999999999999996553    4678999999875431       0111111100001111  26777644 3455


Q ss_pred             eec-----ceEEecCCeEEeccEEEEcc
Q 046865           87 ITE-----NEVLTAEGRRVVYDYLVIAT  109 (369)
Q Consensus        87 ~~~-----~~v~~~~g~~~~~d~lviAt  109 (369)
                      ++.     ..+.+++|+++.+|.+++|.
T Consensus        90 ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          90 VELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             EEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            542     25788899999999999883

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.44  E-value=1.1e-07  Score=70.07  Aligned_cols=89  Identities=22%  Similarity=0.291  Sum_probs=54.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccccccccccCCcccccceeccccccccceEEEe-eeeeee
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGERSVINHTDYLVNGRIVAS-PAINIT   88 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   88 (369)
                      ..+++++|||||+.|+.+|..|+ .|.+|+|+|+++.+..       ..++.........+.+  .+++++.+ .+..++
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~-------~~d~~~~~~l~~~l~~--~GI~i~~~~~v~~i~   90 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-------GFEKQMAAIIKKRLKK--KGVEVVTNALAKGAE   90 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------TSCHHHHHHHHHHHHH--TTCEEEESEEEEEEE
T ss_pred             hcCCeEEEECCCccceeeeeeecccccEEEEEEecceecc-------cccchhHHHHHHHHHh--cCCEEEcCCEEEEEE
Confidence            44579999999999999999886 5999999999987531       1111111110001111  25666543 344454


Q ss_pred             cc----eEEe-cCC--eEEeccEEEEc
Q 046865           89 EN----EVLT-AEG--RRVVYDYLVIA  108 (369)
Q Consensus        89 ~~----~v~~-~~g--~~~~~d~lviA  108 (369)
                      .+    .+.. .+|  +++.+|.+++.
T Consensus        91 ~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          91 EREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            22    3333 234  57899999874

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.42  E-value=1.2e-07  Score=80.21  Aligned_cols=38  Identities=32%  Similarity=0.302  Sum_probs=33.6

Q ss_pred             cCCCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus         9 ~~~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      |++.++||||||||++||++|++|+ +|.+|+||||+..
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4566789999999999999999997 5999999999764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.41  E-value=7.4e-07  Score=75.28  Aligned_cols=99  Identities=14%  Similarity=0.078  Sum_probs=73.8

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc------CCcc----------------------------
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGPK----------------------------  180 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~------~~~~----------------------------  180 (369)
                      ..++|+|||+|+.|+-+|..|++.  |.+|+++++++.....      +.+.                            
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~--G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDAL   80 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETT
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEecc
Confidence            357899999999999999999853  9999999987543211      0110                            


Q ss_pred             ----------------hHHHHHHHH-HhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          181 ----------------AGDKTLDWL-ISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       181 ----------------~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                                      ....+...+ ...++.++.++.+..+...++.+.++++||+++++|++|.|.|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          81 TGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             CCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence                            011111112 2356789999999998877778889999999999999999999764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.40  E-value=1.4e-07  Score=70.27  Aligned_cols=38  Identities=13%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ....+++|||||+.|+.+|..++ .|.+|+++|+.+.+.
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            44679999999999999998886 599999999987653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.39  E-value=9.8e-08  Score=83.33  Aligned_cols=39  Identities=21%  Similarity=0.516  Sum_probs=35.6

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCccccc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~   51 (369)
                      +++|+|||||++||+||+.|+ +|++|+|+|+++++|+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCee
Confidence            579999999999999999997 489999999999998754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=2.4e-07  Score=68.64  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=33.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ..+++++|||||+.|+.+|..|+ .|.+|+|+|+++.+.
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             cCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            34679999999999999999886 599999999988653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=3.4e-07  Score=67.79  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=30.5

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+.+++|||||+.|+.+|..|+ .|.+|+||++++
T Consensus        18 ~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          18 YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            34579999999999999999886 599999999764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.4e-07  Score=68.17  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      .+++++|||||+.|+.+|..|+ .|.+|+|+++++.+.
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            3579999999999999999886 599999999988653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.32  E-value=1.8e-07  Score=80.19  Aligned_cols=39  Identities=26%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             CcceEEEECCChHHHHHHHHc-cc-CCcEEEEcCCCCcccc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSL-QF-SADVTLIDPKEYFEIT   50 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l-~~-g~~V~lie~~~~~~~~   50 (369)
                      ..+||+|||||++||+||++| ++ |++|+|||+++.+|..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~   72 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG   72 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCc
Confidence            568999999999999999998 44 9999999999887743

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=9.3e-07  Score=73.21  Aligned_cols=127  Identities=15%  Similarity=0.076  Sum_probs=79.9

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc----------cCCcchHHHHHHHHHhCCcEEEeCceeeeccC
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------FIGPKAGDKTLDWLISKKVDVKLGQRVNLDSV  207 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~----------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  207 (369)
                      +|+|||+|+.|+.+|..|.+...+.+|+++++.+.+..          .....+.......+++.|++++.++.|..-. 
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-   81 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDV-   81 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTTTB-
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCccc-
Confidence            79999999999999999987667889999999987531          1223455666777888999999998763210 


Q ss_pred             CCCCeEEEcCCCcEEeccEEEEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccC
Q 046865          208 SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDIT  276 (369)
Q Consensus       208 ~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~  276 (369)
                        ..  ..+    .-.+|.+++|+|..+.........   .......+......+..+.+..+..|+..
T Consensus        82 --~~--~~l----~~~~d~v~~a~Ga~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  139 (230)
T d1cjca2          82 --TV--QEL----QDAYHAVVLSYGAEDKSRPIDPSV---PFDPKLGVVPNMEGRVVDVPGLYCSGWVK  139 (230)
T ss_dssp             --CH--HHH----HHHSSEEEECCCCCEECCCCCTTS---CCBTTTTBCCEETTEETTCTTEEECTHHH
T ss_pred             --cH--HHH----HhhhceEEEEeecccccccccccc---cccccccccccccceeecccccccccccc
Confidence              00  001    125799999999865432221111   11111122222222344567888887754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.29  E-value=2.8e-07  Score=68.30  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      .++|+|||||+.|+..|..|+ .|.+|+++++.+.+.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            579999999999999999887 599999999987543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=2.5e-07  Score=73.83  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=29.3

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~   44 (369)
                      .|||+||||||+|++||..++ .|.+|+|||++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            389999999999999999986 59999999985

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.20  E-value=4.1e-07  Score=78.25  Aligned_cols=35  Identities=23%  Similarity=0.434  Sum_probs=31.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +++||+|||||++||++|..|+ .|++|+||||++.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4679999999999999999997 5999999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.18  E-value=8.3e-07  Score=65.78  Aligned_cols=38  Identities=24%  Similarity=0.342  Sum_probs=33.2

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ..+.+++|||||+.|+.+|..++ .|.+|+|+|+++.+.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            34679999999999999999886 599999999988653

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.15  E-value=5.9e-06  Score=67.47  Aligned_cols=93  Identities=17%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc-ccc-----c----c--------C---Ccc---hHHHHHHHHHh-C
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS-RLL-----E----F--------I---GPK---AGDKTLDWLIS-K  192 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~-~~l-----~----~--------~---~~~---~~~~~~~~l~~-~  192 (369)
                      .|+|||+|+.|+|.|...++  .+.++.+++.+. .+.     |    .        .   .+.   ....+++.+++ .
T Consensus         4 DVIVIGgG~AG~eAA~~aAR--~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~   81 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR   81 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             cEEEECcCHHHHHHHHHHHH--CCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence            58999999999999998874  599999998642 110     0    0        0   111   22334444543 4


Q ss_pred             CcEEEeCceeeeccCCCC-CeEEEcCCCcEEeccEEEEcCCC
Q 046865          193 KVDVKLGQRVNLDSVSEG-SDTYLTSTGDTIKADCHFLCTGK  233 (369)
Q Consensus       193 gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~d~vi~a~G~  233 (369)
                      +++++.++.+ ++..+++ ...|++.+|.++.+..||+|||.
T Consensus        82 nL~i~q~~V~-dli~e~~~v~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          82 PLHLFQATAT-GLLLEGNRVVGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             TEEEEECCEE-EEEEETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             CHHHHhccce-eeEecccceeeEEeccccEEEEeEEEEccCc
Confidence            8888877654 4433444 45688999999999999999996

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.13  E-value=8.8e-06  Score=68.97  Aligned_cols=153  Identities=20%  Similarity=0.124  Sum_probs=94.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCcccccc-----CCcc-----------------------------
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLEF-----IGPK-----------------------------  180 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~~l~~-----~~~~-----------------------------  180 (369)
                      |-+|+|||+|+.|+-+|..|++  .|. +|+++++.+.+...     +.+.                             
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~--~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   78 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ   78 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECT
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcC
Confidence            4589999999999999999985  374 99999997654210     0000                             


Q ss_pred             ---------------------------hHHHHHH--HHHhCCcEEEeCceeeeccCCCCCeEEEcCCC----cEEeccEE
Q 046865          181 ---------------------------AGDKTLD--WLISKKVDVKLGQRVNLDSVSEGSDTYLTSTG----DTIKADCH  227 (369)
Q Consensus       181 ---------------------------~~~~~~~--~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~i~~d~v  227 (369)
                                                 ......+  .....++.+..++.++.++..++.+.+.+.++    +++.+|++
T Consensus        79 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~v  158 (288)
T d3c96a1          79 SGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVL  158 (288)
T ss_dssp             TSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEE
T ss_pred             CCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeecee
Confidence                                       0011111  12335788999999988877677777777665    37999999


Q ss_pred             EEcCCCCCCchhhcccccCCCCCCCCcEEeCCceeeccCCCeEEecccCCcccc---chhHHHHHHHHHHHHHHH
Q 046865          228 FLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI---KQGFLAQKHAQVAAKNLK  299 (369)
Q Consensus       228 i~a~G~~p~~~~l~~~~~~~~~~~~g~i~vd~~l~~~~~~~i~a~GD~~~~~~~---~~~~~A~~~g~~~a~~i~  299 (369)
                      |.|-|............      .   ......+......++..+||++....+   ..+..|+..+..++..+.
T Consensus       159 i~ADG~~S~vr~~~~~~------~---~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         159 VGADGIHSAVRAHLHPD------Q---RPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA  224 (288)
T ss_dssp             EECCCTTCHHHHHHCTT------C---CCCCCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHH
T ss_pred             eccCCccceeeeeeccc------c---ccccccccccccCcceecccccceeCCccccchhhhhhhHHHHHHHHh
Confidence            99999863321111100      0   000111112246789999998754322   123466777777776664

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.09  E-value=9.3e-07  Score=78.68  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=33.0

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~   47 (369)
                      ..+|||||||+|+||+.+|.+|+ .|++|+|||++...
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            45799999999999999999997 59999999997643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.07  E-value=1.2e-06  Score=77.41  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=32.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc------cCCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ------FSADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~------~g~~V~lie~~~~~~   48 (369)
                      ..|||+|||||++|+++|..|+      .|++|+||||++.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            3699999999999999999883      599999999987543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.05  E-value=1.2e-06  Score=74.65  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=31.0

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCCCcc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFE   48 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~~~~   48 (369)
                      .||+|||||++||++|..|+ .|. +|+|+||++.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            69999999999999999996 585 899999987653

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=1.3e-06  Score=75.96  Aligned_cols=41  Identities=17%  Similarity=0.118  Sum_probs=35.4

Q ss_pred             CCcceEEEECCChHHHHHHHHcc---cCCcEEEEcCCCCccccc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITW   51 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~---~g~~V~lie~~~~~~~~~   51 (369)
                      ...+||+||||||+||+||+.|+   .|++|+|+|+++.++..+
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   91 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS   91 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCccee
Confidence            34689999999999999999986   389999999998887543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=9.8e-06  Score=67.00  Aligned_cols=92  Identities=12%  Similarity=-0.019  Sum_probs=66.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhh-----CCCCeEEEEEcCccccc----------cCCcchHHHHHHHHHhCCcEEEeCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVD-----FPEKKVTLVHKGSRLLE----------FIGPKAGDKTLDWLISKKVDVKLGQ  200 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~-----~~~~~v~lv~~~~~~l~----------~~~~~~~~~~~~~l~~~gv~i~~~~  200 (369)
                      |.+|+|||+|++|+.+|..|.++     ..+.+|+++++.+.+..          .....+.+...+.+.+.|+++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            57999999999999999999864     23468999999886532          1234566777778889999999998


Q ss_pred             eeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          201 RVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      .+.....        .+ .-...+|.+++|||..+.
T Consensus        82 ~v~~~~~--------~~-~~~~~~~~v~~atGa~~~  108 (239)
T d1lqta2          82 VVGEHVQ--------PG-ELSERYDAVIYAVGAQSR  108 (239)
T ss_dssp             CBTTTBC--------HH-HHHHHSSEEEECCCCCEE
T ss_pred             Eeccccc--------hh-hhhccccceeeecCCCcc
Confidence            7642110        00 012358999999998643

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.80  E-value=1e-05  Score=71.72  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=32.5

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~   47 (369)
                      ..++||||||+|++|+.+|.+|+ .|++|+|+|++..+
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~   42 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   42 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            35799999999999999999996 69999999997543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.77  E-value=2.2e-06  Score=71.06  Aligned_cols=39  Identities=33%  Similarity=0.493  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      ..+++++|||+|+.|+..|..|++  .|.+|+++++.+++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIG   85 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHH--hccceeeEeeccccC
Confidence            457999999999999999999985  489999999988764

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.71  E-value=8.3e-06  Score=71.93  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=31.7

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~   46 (369)
                      ..||+||||||+||+.+|.+|+..++|+|||+++.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCCCCEEEEecCCC
Confidence            35899999999999999999987799999999864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.71  E-value=6.6e-05  Score=53.61  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=52.2

Q ss_pred             HhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe
Q 046865          133 IKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD  212 (369)
Q Consensus       133 ~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~  212 (369)
                      ....++|+|||+|.+|+++|.+|+.  ..++++++.+.+.....              ..++..  ...+.+++..  ..
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~--~ak~v~~~~~r~~~~~~--------------~~~~~~--~~~i~~~~~~--~~   88 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTP--VAKHPIYQSLLGGGDIQ--------------NESLQQ--VPEITKFDPT--TR   88 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTT--TSCSSEEEECTTCCSCB--------------CSSEEE--ECCEEEEETT--TT
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHH--hcCEEEEEEecCccccc--------------ccccee--cCCeeEEecC--CC
Confidence            3567999999999999999999984  36677777665543211              112222  2234444332  33


Q ss_pred             EEEcCCCcEEe-ccEEEEc
Q 046865          213 TYLTSTGDTIK-ADCHFLC  230 (369)
Q Consensus       213 ~v~~~~g~~i~-~d~vi~a  230 (369)
                      .+.+.||+++. .|.||+|
T Consensus        89 ~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          89 EIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEEETTTEEECCCSEEEEC
T ss_pred             EEEEcCCCEEeCCCEEEEC
Confidence            57889998876 6999987

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.68  E-value=1.3e-05  Score=71.06  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCc
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~   47 (369)
                      .||||||+|++|+.+|.+|. +|++|+|||++..+
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~   37 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCC
Confidence            48999999999999999996 69999999997543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.67  E-value=3.2e-05  Score=62.99  Aligned_cols=95  Identities=20%  Similarity=0.197  Sum_probs=62.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------------------------------CC-----
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------------IG-----  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------------------------------~~-----  178 (369)
                      -.++|||+|+.|+++|..+++  .+.+|+++++.+.+...                                 ..     
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~--~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~   81 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL   81 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecH
Confidence            368999999999999999885  48999999987654110                                 00     


Q ss_pred             -----------cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE--EcCCCcEEeccEEEEcCCCCCC
Q 046865          179 -----------PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY--LTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       179 -----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v--~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                                 ..+.+.+...++..+|+++........   ......  ...+...+.+|.||+|||.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~---~~~~~~~~~~~~~~~~~a~~VIiATGs~~~  149 (221)
T d1dxla1          82 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVS---PSEISVDTIEGENTVVKGKHIIIATGSDVK  149 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEE---TTEEEECCSSSCCEEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEecccccc---ccccccccccccccccccceEEEeECCCcc
Confidence                       012334455666778888766433211   111111  1233457899999999998874

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.61  E-value=1.8e-05  Score=70.01  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=30.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .||+||||+|+||+.+|.+|+ .|.+|+|||++..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            599999999999999999996 5899999999853

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.61  E-value=2.4e-05  Score=69.81  Aligned_cols=37  Identities=27%  Similarity=0.524  Sum_probs=32.3

Q ss_pred             CCCcceEEEECCChHHHHHHHHccc--CCcEEEEcCCCC
Q 046865           10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (369)
Q Consensus        10 ~~~~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~~   46 (369)
                      ..+.||+||||||.||+.+|.+|..  +++|+|||++++
T Consensus        14 ~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          14 SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             cCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            3457999999999999999999964  589999999864

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.59  E-value=2.4e-05  Score=69.89  Aligned_cols=36  Identities=33%  Similarity=0.520  Sum_probs=31.8

Q ss_pred             CCcceEEEECCChHHHHHHHHccc-C-CcEEEEcCCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~~-g-~~V~lie~~~~   46 (369)
                      .+.||+||||||.||+.+|.+|++ + .+|+|||+++.
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            357999999999999999999974 4 79999999864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.55  E-value=0.00019  Score=60.91  Aligned_cols=97  Identities=11%  Similarity=0.125  Sum_probs=66.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc--c-----CC-------------------------------
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--F-----IG-------------------------------  178 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~--~-----~~-------------------------------  178 (369)
                      .+|+|||+|++|+-+|..|++.  |.+|+++++.+...+  .     +.                               
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~   80 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA   80 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEec
Confidence            3699999999999999999864  899999998753110  0     00                               


Q ss_pred             ----------------------cchHHHHHHHHHhCCcEEEeCceee-eccCCCCCeEEEc-CCCc--EEeccEEEEcCC
Q 046865          179 ----------------------PKAGDKTLDWLISKKVDVKLGQRVN-LDSVSEGSDTYLT-STGD--TIKADCHFLCTG  232 (369)
Q Consensus       179 ----------------------~~~~~~~~~~l~~~gv~i~~~~~v~-~i~~~~~~~~v~~-~~g~--~i~~d~vi~a~G  232 (369)
                                            ..+.+.+.+.+++.+..++.+.... .+..+++...+++ .+|+  ++.+|+||-|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG  160 (292)
T d1k0ia1          81 GQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDG  160 (292)
T ss_dssp             TEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCC
T ss_pred             ccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCC
Confidence                                  1234445666666776666665444 4444555566654 4554  578999999999


Q ss_pred             CCC
Q 046865          233 KPV  235 (369)
Q Consensus       233 ~~p  235 (369)
                      .+.
T Consensus       161 ~~S  163 (292)
T d1k0ia1         161 FHG  163 (292)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.51  E-value=0.00013  Score=55.70  Aligned_cols=36  Identities=28%  Similarity=0.265  Sum_probs=29.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCCCc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYF   47 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~~~   47 (369)
                      ...+|||||||..|+-+|..|. .|. +|+++.+++..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            4568999999999999998764 565 58899987653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.49  E-value=0.00013  Score=59.23  Aligned_cols=33  Identities=30%  Similarity=0.389  Sum_probs=28.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~  170 (369)
                      .-.++|||+|+.|+++|..+++.  |.+|+++++.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~--G~~V~liE~~   37 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQ   37 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHH--TCCEEEECSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCcEEEEecC
Confidence            35799999999999999999854  9999999865

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.44  E-value=0.00019  Score=54.99  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             cceEEEE--CCChHHHHHHHHcc-cCCcEEEEcCCCCcc
Q 046865           13 NKRVVVI--GGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (369)
Q Consensus        13 ~~~vvII--GgG~aGl~aA~~l~-~g~~V~lie~~~~~~   48 (369)
                      ...++|+  |||+.|+.+|..|+ .|.+|+||++.+.+.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            4466665  99999999999986 699999999987654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.43  E-value=0.00024  Score=58.09  Aligned_cols=36  Identities=17%  Similarity=0.419  Sum_probs=30.3

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ...|+|+|||+|.+|+++|.++...  +.+++++.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~--~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhh--hcccccccccc
Confidence            4679999999999999999999864  67777776664

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=3.4e-06  Score=61.66  Aligned_cols=53  Identities=21%  Similarity=0.143  Sum_probs=41.4

Q ss_pred             CCCcEEEEeecCCCc--------eEEcCccc-----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDA--------VAQLPFMT-----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~--------~~~~~~~~-----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+|+++.+|+++.++        +..+++..     ..+...|++|+  ++++++++|||+|++|.||
T Consensus        10 t~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKl--v~d~~~~~ilGa~ivG~~A   75 (118)
T d1xdia2          10 TRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKI--FCRRSTGVVIGGVVVAPIA   75 (118)
T ss_dssp             SSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             CCChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEE--EEecCCCceEEEEEEcCcH
Confidence            479999999976554        33443332     35778899999  9999999999999999875

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.39  E-value=0.00015  Score=59.31  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhh-------------------CCCCeEEEEEcCcc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVD-------------------FPEKKVTLVHKGSR  172 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~-------------------~~~~~v~lv~~~~~  172 (369)
                      .++++|||+|.+++++|..+.+.                   ..-.+|+++.|...
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            69999999999999999988741                   13478999998764

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=5.6e-06  Score=60.19  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=41.2

Q ss_pred             CCCcEEEEeecCCCce--------EEcCccc-----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+|+++.||++++++.        ..+++..     ..+...|++|+  ++++++++|||+|++|.||
T Consensus         8 t~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKl--i~~~~~~~iLG~~ivg~~A   73 (115)
T d1ebda3           8 SDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKL--VVRKEDGVIIGAQIIGPNA   73 (115)
T ss_dssp             SSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEE--EEETTTTEEEEEEEESTTH
T ss_pred             CCCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEE--EEeCCcceEEEEEEEcCCH
Confidence            4789999999876652        3333322     45677899999  9999999999999999875

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=5.4e-06  Score=61.08  Aligned_cols=53  Identities=25%  Similarity=0.340  Sum_probs=41.5

Q ss_pred             CCCcEEEEeecCCCc--------eEEcCcc-----cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDA--------VAQLPFM-----TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~--------~~~~~~~-----~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..|+++.||++++++        +..+++.     ...+...||+|+  ++++++++|||+|++|.||
T Consensus        10 t~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kl--i~d~~~~~ilGa~ivG~~A   75 (123)
T d1v59a3          10 SHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKI--LIDSKTERILGAHIIGPNA   75 (123)
T ss_dssp             SSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             cCCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEE--EEECCCCEEEEEEEEchHH
Confidence            468999999986655        3333332     246778999999  9999999999999999875

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.31  E-value=7.1e-06  Score=60.84  Aligned_cols=53  Identities=21%  Similarity=0.259  Sum_probs=42.0

Q ss_pred             CCCcEEEEeecCCCc--------eEEcCccc-----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDA--------VAQLPFMT-----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~--------~~~~~~~~-----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+|+++.||+++.++        +..+++..     ..+...||+|+  ++++++++|||+|++|.||
T Consensus        10 t~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kl--i~d~~~g~iLGa~ivG~~A   75 (128)
T d1ojta3          10 TSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKL--IFDAETGRIIGGGIVGPNG   75 (128)
T ss_dssp             SSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEE--EEETTTCBEEEEEEESTTH
T ss_pred             CCCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEE--EEeCCCCeEEEEEEEhhhH
Confidence            479999999976665        33343322     45778999999  9999999999999999885

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.28  E-value=9.5e-06  Score=59.67  Aligned_cols=53  Identities=15%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             CCCcEEEEeecCCCce--------EEcCccc-----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDAV--------AQLPFMT-----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~~--------~~~~~~~-----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+|+++.||++++++.        ..+++..     ..+...|++|+  ++++++++|||+|++|.||
T Consensus        10 t~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vkl--v~d~~t~~ILG~~ivG~~A   75 (123)
T d1lvla3          10 TDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRV--VARRDNHLILGWQAVGVAV   75 (123)
T ss_dssp             SSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEE--EEETTTCBEEEEEEEETTG
T ss_pred             CCCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheee--eeecccccceEEEEEeCch
Confidence            4699999999876553        3333322     45778899999  9999999999999999876

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.28  E-value=5.9e-08  Score=82.39  Aligned_cols=197  Identities=16%  Similarity=0.172  Sum_probs=90.5

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCCcccccc--------ccc-------------cc-cC--Cccccccee
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--------SLR-------------AM-VE--PSFGERSVI   68 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~~~~~~~--------~~~-------------~~-~~--~~~~~~~~~   68 (369)
                      ||++||||||||++||.+++ .|.+|+|||++. +|..+.        .+.             .+ +.  ..+......
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~   80 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLV   80 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHH
Confidence            89999999999999999986 599999999975 443211        000             00 00  111111111


Q ss_pred             cc------------ccc--cccceEEEeeeeeeecceEEec-------------CCeEEeccEEEEccCCCCC-----CC
Q 046865           69 NH------------TDY--LVNGRIVASPAINITENEVLTA-------------EGRRVVYDYLVIATGHKDP-----VP  116 (369)
Q Consensus        69 ~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~-------------~g~~~~~d~lviAtG~~~~-----~p  116 (369)
                      ..            ...  ..+++++.+++.+++.+++...             +.+++++|++++|||++|.     .|
T Consensus        81 ~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~  160 (259)
T d1onfa1          81 ERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTE  160 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTT
T ss_pred             hhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccc
Confidence            00            000  1367889998888887754432             2356999999999999983     34


Q ss_pred             CChHH--HHHHHHHHHHHHhcCCeEEEEcCChhH--HHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhC
Q 046865          117 KTRTE--RLNQYQAENQKIKSARSILIVGGGPTG--VELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK  192 (369)
Q Consensus       117 ~~~~~--~~~~~~~~~~~~~~~~~v~vvG~G~~g--~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~  192 (369)
                      ++..+  .+.+..... ....+.+..|+|+|++|  ++.+....  ..+..+..+......+            ...+..
T Consensus       161 ~~~l~~~~i~ts~~~~-~~d~~~~t~Vig~gaiGdv~~~~~~~~--~~~~~~~~~~~~~~~~------------~~~~~~  225 (259)
T d1onfa1         161 NLKLEKLNVETNNNYI-VVDENQRTSVNNIYAVGDCCMVKKSKE--IEDLNLLKLYNEERYL------------NKKENV  225 (259)
T ss_dssp             TSSCTTTTCCBSSSCE-EECTTCBCSSSSEEECSTTEEEC----------------------------------------
T ss_pred             ccccccceeeeccccc-ccccCCceeEeeEEEEEEeeehhhhhh--hcchhhHhhhcCCccc------------cccCCc
Confidence            33211  111111111 11223345677888776  22222111  1122333332222111            111222


Q ss_pred             CcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCC
Q 046865          193 KVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       193 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ..+++++..++.+.         ...| ++.+|.+++|+|++||
T Consensus       226 ~~~~~~~~~~~~V~---------~~~G-~~~ad~vlvatGR~PN  259 (259)
T d1onfa1         226 TEDIFYNVQLTPVA---------INAG-RLLADRLFLKKTRKTN  259 (259)
T ss_dssp             ----CBCCCCHHHH---------HHHH-HHHHHHHHSCTTCCCC
T ss_pred             ceEEecCcEEEEEE---------cccc-eeEeceeEeCCCcCCC
Confidence            34455554444321         2234 4679999999999997

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.27  E-value=1.7e-05  Score=65.64  Aligned_cols=45  Identities=22%  Similarity=0.052  Sum_probs=32.1

Q ss_pred             cchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCC
Q 046865          179 PKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       179 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p  235 (369)
                      +.+...+.+.++++|++|+.. +|++++.           .....+|.||.|+|...
T Consensus       142 ~~~~~~L~~~~~~~G~~~~~~-~v~~l~~-----------~~~~~~d~vVnctG~~a  186 (246)
T d1kifa1         142 RKYLQWLTERLTERGVKFFLR-KVESFEE-----------VARGGADVIINCTGVWA  186 (246)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCCHHH-----------HHHTTCSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-EeCCHHH-----------hccCCCCEEEECCcccc
Confidence            367788899999999999865 3544321           11345799999999864

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=4.3e-06  Score=60.82  Aligned_cols=53  Identities=21%  Similarity=0.280  Sum_probs=41.1

Q ss_pred             CCCcEEEEeecCCCceEE----------cCcc-----cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDAVAQ----------LPFM-----TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~~~~----------~~~~-----~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..|+++.||+++++|..+          +++.     ...+...|++|+  ++++++++|||+|++|.+|
T Consensus        10 t~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~--i~~~~~~~ilG~~ivG~~A   77 (115)
T d3grsa3          10 SHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKM--VCANKEEKVVGIHMQGLGC   77 (115)
T ss_dssp             CSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEE--EEETTTTEEEEEEEESTTH
T ss_pred             CcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEE--EEecCCceEEEEEEeccCH
Confidence            469999999987766322          2221     246777899998  9999999999999999875

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.17  E-value=1.9e-05  Score=59.53  Aligned_cols=53  Identities=25%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             CCCcEEEEeecCCCce--------EEcCccc---------------------ccccccceecccccchHHHHHHcCCCCC
Q 046865          315 PHSAIAIVSLGRKDAV--------AQLPFMT---------------------TIGCVPGLIKSRDLFVGKTRKQMGLEPD  365 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~~--------~~~~~~~---------------------~~g~~~~~~k~~~~~~~~~~~ilG~~~~  365 (369)
                      .+|+++.||+++.+|.        ..++...                     ..+...|++|+  ++++++++|||+|++
T Consensus        10 T~PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKl--v~d~~t~~IlGa~iv   87 (140)
T d1mo9a3          10 THYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKI--VIDAKTRKVLGAHHV   87 (140)
T ss_dssp             SSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEE--EEETTTCBEEEEEEE
T ss_pred             cCCccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEE--EEecCCCcEEEEEEE
Confidence            4799999999877663        3332211                     24567899999  999999999999999


Q ss_pred             ccCC
Q 046865          366 VAHA  369 (369)
Q Consensus       366 ~~~~  369 (369)
                      |.||
T Consensus        88 G~~A   91 (140)
T d1mo9a3          88 GYGA   91 (140)
T ss_dssp             ESSC
T ss_pred             CCCH
Confidence            9886

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.13  E-value=1e-05  Score=59.71  Aligned_cols=53  Identities=25%  Similarity=0.312  Sum_probs=40.7

Q ss_pred             CCCcEEEEeecCCCc--------eEEcCccc-----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDA--------VAQLPFMT-----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~--------~~~~~~~~-----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..|+++.||+++.++        +..+++..     ..+...|++|+  ++++++++|||+|++|-||
T Consensus        10 t~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKl--v~d~~t~~ILGa~ivg~~A   75 (124)
T d3lada3          10 THPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKV--IADAKTDRVLGVHVIGPSA   75 (124)
T ss_dssp             SSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             CcCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEE--EEECCCCEEEEEEEEcccH
Confidence            468999999976554        23333321     35678899998  9999999999999999875

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0014  Score=52.85  Aligned_cols=95  Identities=16%  Similarity=0.200  Sum_probs=62.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc------------------------------c-cc----cCCc---
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR------------------------------L-LE----FIGP---  179 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~------------------------------~-l~----~~~~---  179 (369)
                      .++|||+|+.|+++|..+++  .+.+|.++++...                              . .+    .++.   
T Consensus         5 DviIIG~GpaG~~aA~~aar--~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAE--LGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVI   82 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhh
Confidence            48999999999999999884  4899999987531                              0 00    0000   


Q ss_pred             ---------chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEcCCCCCCch
Q 046865          180 ---------KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSD  238 (369)
Q Consensus       180 ---------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  238 (369)
                               .+.....+.+++.||+++.+......   ....++.. ...++.++.+++++|.+|..+
T Consensus        83 ~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~---~~~~~~~~-~~~~~~~~~~~iatG~~p~vp  146 (221)
T d3grsa1          83 KEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTS---DPKPTIEV-SGKKYTAPHILIATGGMPSTP  146 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECS---CSSCEEEE-TTEEEECSCEEECCCEEECCC
T ss_pred             hhhhheEEeeeccchhhhhccCceEEEEEeeeecc---ccceeeee-eccccccceeEEecCccccCC
Confidence                     12223345678899999877543211   12223332 335789999999999988654

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.12  E-value=1.1e-05  Score=59.46  Aligned_cols=53  Identities=26%  Similarity=0.412  Sum_probs=40.9

Q ss_pred             CCCcEEEEeecCCCc--------eEEcCccc-----ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDA--------VAQLPFMT-----TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~--------~~~~~~~~-----~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+|+++.+|+++.++        +..+++..     ..+...|++|+  ++++++++|||+|++|-||
T Consensus        10 t~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Kl--v~d~~~~~ilG~~ivG~~A   75 (123)
T d1dxla3          10 TNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKI--IAEKETDKILGVHIMAPNA   75 (123)
T ss_dssp             SSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEE--EEETTTCBEEEEEEEETTH
T ss_pred             cCCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEE--EEECCCCEEEEEEEehhhH
Confidence            469999999976554        23333322     45678899999  9999999999999999875

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.00048  Score=55.72  Aligned_cols=37  Identities=14%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhh-------------------hCCCCeEEEEEcCcc
Q 046865          136 ARSILIVGGGPTGVELAGEIAV-------------------DFPEKKVTLVHKGSR  172 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~-------------------~~~~~~v~lv~~~~~  172 (369)
                      .++++|||+|.+++++|..+..                   +..-.+|+++.|...
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            6899999999999999987752                   233568999988653

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=9.4e-06  Score=58.95  Aligned_cols=53  Identities=25%  Similarity=0.252  Sum_probs=40.5

Q ss_pred             CCCcEEEEeecCCCceE----------EcCcc-----cccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDAVA----------QLPFM-----TTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~~~----------~~~~~-----~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..|+++.||+++++|..          .+++.     ...+...|++|+  ++++++++|||+|++|-||
T Consensus        10 t~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~--v~~~~~~~IlGa~ivG~~A   77 (115)
T d1gesa3          10 SHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKL--VCVGSEEKIVGIHGIGFGM   77 (115)
T ss_dssp             CSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEE--EEETTTTEEEEEEEESTTH
T ss_pred             CCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEE--EEecCCcEEEEEEEECCCH
Confidence            46999999998766532          22221     135667899999  9999999999999999875

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00098  Score=51.03  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=21.8

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SAD   37 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~   37 (369)
                      ..++|+|||||..|+-+|..+.+ |.+
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            45799999999999999998864 654

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.94  E-value=0.00086  Score=50.09  Aligned_cols=108  Identities=16%  Similarity=0.112  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHhcCCeEEEE-cC-----ChhHHHHHHHH----hhhCCCCeEEEEEcCccc--cccCCcchHHHHHHHHH
Q 046865          123 LNQYQAENQKIKSARSILIV-GG-----GPTGVELAGEI----AVDFPEKKVTLVHKGSRL--LEFIGPKAGDKTLDWLI  190 (369)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~vv-G~-----G~~g~e~a~~l----~~~~~~~~v~lv~~~~~~--l~~~~~~~~~~~~~~l~  190 (369)
                      ...+.+..+.+..+.++++. .+     +..-.|++..+    +++....++.++...+..  .+.+.+...+.+.+.++
T Consensus        20 ~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (141)
T d1fcda2          20 TAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTE   99 (141)
T ss_dssp             HHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTS
T ss_pred             HHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHH
Confidence            34444444555555566553 22     33345555443    333344677777665532  22223345566666678


Q ss_pred             hCCcEEEeCceeeeccCCCCCeEEEcCCCcEEeccEEEEc
Q 046865          191 SKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLC  230 (369)
Q Consensus       191 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vi~a  230 (369)
                      ++||+++.+.....++.+.....+++.+|+++++|++++.
T Consensus       100 ~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2         100 NAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI  139 (141)
T ss_dssp             SCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred             hcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence            8999999987655455555556788899999999999875

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.86  E-value=2.1e-05  Score=57.42  Aligned_cols=53  Identities=21%  Similarity=0.181  Sum_probs=38.8

Q ss_pred             CCCcEEEEeecCCCceEE------------cCc-------ccccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDAVAQ------------LPF-------MTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~~~~------------~~~-------~~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      ..|+++.||+++.+|...            +..       ....+...|++|+  ++++++++|||+|++|.||
T Consensus        10 T~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kl--i~~~~~~~IlGa~ivG~~A   81 (119)
T d1onfa3          10 SHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKL--VCVGKDELIKGLHIIGLNA   81 (119)
T ss_dssp             CSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEE--EEETTTTEEEEEEEESTTH
T ss_pred             cCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEE--EEecCCCcEEEEEEeCCCH
Confidence            469999999987655321            111       1123345689998  9999999999999999886

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.83  E-value=0.0047  Score=51.64  Aligned_cols=100  Identities=14%  Similarity=0.109  Sum_probs=65.2

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc-------CC-----c-----------------------
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IG-----P-----------------------  179 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~-------~~-----~-----------------------  179 (369)
                      ....|+|||+|+.|+.+|..|++ ..|.+|+++++.+.+...       ++     .                       
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~-~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  110 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVK  110 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHT-STTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEES
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH-ccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceec
Confidence            34569999999999999999874 369999999998654210       00     0                       


Q ss_pred             ----chHHHHHHHHHhCCcEEEeCceeeeccCCCCCeE-EE--------------cCCCcEEeccEEEEcCCCCC
Q 046865          180 ----KAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDT-YL--------------TSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       180 ----~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~--------------~~~g~~i~~d~vi~a~G~~p  235 (369)
                          .+...+.+.++..++.+..++.+..+...++.+. +.              ..++.++.++.++.++|...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         111 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             CHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             ccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence                1222334455567788888877766544333221 11              11234789999999999753

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.76  E-value=5e-05  Score=56.02  Aligned_cols=51  Identities=10%  Similarity=-0.038  Sum_probs=38.5

Q ss_pred             CCcEEEEeecCCCce--------EEcCc----ccccccccceecccccchHHHHHHcCCCCCccC
Q 046865          316 HSAIAIVSLGRKDAV--------AQLPF----MTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAH  368 (369)
Q Consensus       316 ~~~~~~v~lg~~~~~--------~~~~~----~~~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~  368 (369)
                      +++++.+|+++.+|.        ..++.    ....+...+++|+  ++++++++|||+|++|.|
T Consensus        12 d~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kl--i~d~~t~~IlG~~ivG~~   74 (126)
T d1nhpa3          12 DYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKL--VYDPETTQILGAQLMSKA   74 (126)
T ss_dssp             TEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEE--EECTTTCBEEEEEEEESS
T ss_pred             CccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEE--EEECCCCCEEEEEEEech
Confidence            579999999877652        22211    1234666899998  999999999999999976

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.73  E-value=0.00052  Score=53.44  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .++|+|||+|..|..+|..|. .|++|+|+||+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            479999999999999999996 5899999999753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00065  Score=46.79  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=30.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      +.++|+|+|.|-+|+++|+.|. .|.+|++.|.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            3578999999999999999886 6999999998653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.63  E-value=0.00065  Score=58.47  Aligned_cols=39  Identities=26%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             HhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          133 IKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       133 ~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ...+++|+|||+|++|+-+|..|+++  |.+|+++++.+++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~~~   65 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERP   65 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            46689999999999999999999965  8999999998765

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.62  E-value=6e-05  Score=55.63  Aligned_cols=53  Identities=8%  Similarity=0.045  Sum_probs=38.5

Q ss_pred             CCCcEEEEeecCCCce--------EEcCccc------ccccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDAV--------AQLPFMT------TIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~~--------~~~~~~~------~~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+|+++.||+++.++.        ...++..      ..+...+++|+  ++++++++|||+|++|.||
T Consensus        10 T~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~kl--v~~~~~g~iLGa~ivG~~A   76 (128)
T d1feca3          10 SIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRI--VTNHADGEVLGVHMLGDSS   76 (128)
T ss_dssp             CSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEE--EEETTTTEEEEEEEESTTH
T ss_pred             CCCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEE--eecCCCCceeEEEEECCCH
Confidence            4799999999876653        2222211      12344568898  9999999999999999886

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.59  E-value=0.0063  Score=42.77  Aligned_cols=34  Identities=15%  Similarity=0.191  Sum_probs=27.5

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~   45 (369)
                      ..++|+|||+|.+|+-.|..|++ ..+++++.+.+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            46899999999999999999875 55666666654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.46  E-value=0.0013  Score=55.72  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=32.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      .|+|+|||+|+.|+-+|..|++  .|.+|+++++++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~~~G   37 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAG   37 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCCCCc
Confidence            4789999999999999999985  489999999987653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.35  E-value=0.0012  Score=48.76  Aligned_cols=32  Identities=34%  Similarity=0.472  Sum_probs=29.3

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|+|+|+|.-|...|..|. .|++|++||+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            48999999999999999996 699999999975

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.31  E-value=0.0014  Score=51.10  Aligned_cols=33  Identities=27%  Similarity=0.249  Sum_probs=29.9

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +++|.|||+|..|+..|..|. .|++|+++++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999999999986 699999999975

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0023  Score=46.70  Aligned_cols=37  Identities=35%  Similarity=0.527  Sum_probs=32.6

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~   48 (369)
                      +.++|+|||||-+.+..|..|.+ ..+|+||-|++.+.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            46899999999999999999986 68899999987654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.10  E-value=0.0022  Score=49.49  Aligned_cols=33  Identities=33%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .-+|+|||+|.+|+.||..+. -|.+|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            469999999999999998775 599999999875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.07  E-value=0.0025  Score=48.42  Aligned_cols=34  Identities=38%  Similarity=0.596  Sum_probs=30.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..-+|+|||+|.+|+.|+..+. -|.+|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            4679999999999999999876 599999999864

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.97  E-value=0.0039  Score=53.24  Aligned_cols=38  Identities=24%  Similarity=0.458  Sum_probs=34.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~  175 (369)
                      .++|+|||||++|+-+|..|++  .|.+|+++++++++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k--~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--CCCCEEEEECCCCCcC
Confidence            5789999999999999999985  4899999999998765

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0031  Score=48.22  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=29.5

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ++|+|||+|..|...|..|. .|++|++++|++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            58999999999999999986 5999999999764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0035  Score=53.83  Aligned_cols=38  Identities=24%  Similarity=0.397  Sum_probs=33.4

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      +..+|+|||+|.+|+-+|..|+++  |.+|+++++++++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVG   41 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCCc
Confidence            456799999999999999999864  89999999988764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.86  E-value=0.0065  Score=52.29  Aligned_cols=37  Identities=35%  Similarity=0.595  Sum_probs=31.4

Q ss_pred             eEEEEcCChhHHHHHHHHhh---hCCCCeEEEEEcCcccc
Q 046865          138 SILIVGGGPTGVELAGEIAV---DFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~---~~~~~~v~lv~~~~~~l  174 (369)
                      .|+|||||++|+-+|..|++   +..|.+|+++++.+.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            69999999999999999974   24589999999987654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0047  Score=44.88  Aligned_cols=37  Identities=41%  Similarity=0.484  Sum_probs=32.1

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~   48 (369)
                      +.++|+|||||.+.+..|..|.+ ..+|+||-+++.+.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~   66 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK   66 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc
Confidence            46899999999999999999975 67899999887653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.79  E-value=0.0035  Score=52.67  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=31.2

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      +|+|||+|+.|+.+|..|++  .|.+|+++++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCC
Confidence            69999999999999999985  489999999987663

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.77  E-value=0.0049  Score=46.52  Aligned_cols=39  Identities=28%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             ccCCCcceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCCC
Q 046865            8 QSEGKNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (369)
Q Consensus         8 ~~~~~~~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~~   46 (369)
                      +++.++++|.|||+|..|.++|+.|. .+ .+++|+|.++.
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            35667899999999999999998765 34 48999998753

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.76  E-value=0.0024  Score=47.07  Aligned_cols=32  Identities=34%  Similarity=0.500  Sum_probs=29.1

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++++|+|+|..|..+|..|. .|++|++||+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            47899999999999999996 699999999975

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.70  E-value=0.0041  Score=51.18  Aligned_cols=35  Identities=14%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCcccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLL  174 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~~l  174 (369)
                      +|+|||+|+.|+-+|..|+++  |. +|+++++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~--G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEA--GITDLLILEATDHIG   37 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSSSSB
T ss_pred             CEEEECCcHHHHHHHHHHHhC--CCCcEEEEECCCCCC
Confidence            589999999999999999863  74 799999988653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.63  E-value=0.006  Score=49.92  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ..++|+|||+|..|+-.|..|+++  |.+|+++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARK--GYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            457899999999999999999964  88999999853

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.55  E-value=0.029  Score=44.94  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=27.3

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|+|||+|..|+-+|..|. .+.+++++-+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            4689999999999999999986 466666665544

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0048  Score=46.36  Aligned_cols=33  Identities=36%  Similarity=0.629  Sum_probs=29.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~   44 (369)
                      ..++|+|||||..|+.-|..|. .|.+|+||.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999999998875 59999999764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0065  Score=41.46  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=53.3

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..++++|+|-|-+|..+|..|.+  .+.+|++++..+..      +..+    .+ +.++.++++..-            
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~~~------~~~~----~~-~~~~~~~~~~~~------------   58 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMTP------PGLD----KL-PEAVERHTGSLN------------   58 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSSSC------TTGG----GS-CTTSCEEESBCC------------
T ss_pred             CCCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCcCc------hhHH----HH-hhccceeecccc------------
Confidence            46889999999999999998885  49999999875431      1111    11 224444433210            


Q ss_pred             EcCCCcEEeccEEEEcCCCCCCchhhcc
Q 046865          215 LTSTGDTIKADCHFLCTGKPVGSDWLKD  242 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~p~~~~l~~  242 (369)
                         ....-.+|.+|+++|..++.+.+..
T Consensus        59 ---~~~~~~~d~vi~SPGi~~~~~~~~~   83 (93)
T d2jfga1          59 ---DEWLMAADLIVASPGIALAHPSLSA   83 (93)
T ss_dssp             ---HHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred             ---hhhhccCCEEEECCCCCCCCHHHHH
Confidence               0012357999999999998877654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.0093  Score=44.69  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=29.9

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcC
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~  170 (369)
                      ..++++|||||.+|.+-+..|.+.  |.+|+++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~--GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            468999999999999999999864  9999999653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.38  E-value=0.011  Score=44.70  Aligned_cols=39  Identities=28%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             cccCCCcceEEEECCChHHHHHHHHcc-cCC--cEEEEcCCC
Q 046865            7 QQSEGKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (369)
Q Consensus         7 ~~~~~~~~~vvIIGgG~aGl~aA~~l~-~g~--~V~lie~~~   45 (369)
                      +....++++|.|||+|..|-++|+.|. ++.  ++.|+|.++
T Consensus        14 ~~~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          14 EEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SCCCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             ccccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            334455789999999999999999885 454  899999864

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0065  Score=49.34  Aligned_cols=35  Identities=31%  Similarity=0.467  Sum_probs=31.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      .++|||+|..|+-+|..|+++  |.+|+++++++.+.
T Consensus         7 DviViGaG~~Gl~~A~~La~~--G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVD--GKKVLHIDKQDHYG   41 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCCEEEEcCCCCCC
Confidence            589999999999999999864  89999999988764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.36  E-value=0.0058  Score=48.44  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=28.8

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|.|||.|+.|+..|..|+ +|++|+.+|.++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            47999999999999999886 699999999875

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0079  Score=50.81  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=32.2

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~  175 (369)
                      .++|||||++|+-+|..|++.  |.+|+++++++++..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSSSG
T ss_pred             cEEEECCcHHHHHHHHHHHhC--CCcEEEEECCCCccc
Confidence            589999999999999999864  899999999988755

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.27  E-value=0.0076  Score=47.44  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             ceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~   46 (369)
                      ++|.|||.|+.|+.+|..+++|++|+.+|.++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSLQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHHCCCcEEEEECCHH
Confidence            479999999999999988888999999998753

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.21  E-value=0.0088  Score=53.63  Aligned_cols=57  Identities=9%  Similarity=-0.119  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHhCCcEEEeCceeeeccCC--CCCe-EEEcCCCcEEeccEEEEcCCCCCC
Q 046865          180 KAGDKTLDWLISKKVDVKLGQRVNLDSVS--EGSD-TYLTSTGDTIKADCHFLCTGKPVG  236 (369)
Q Consensus       180 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~~g~~i~~d~vi~a~G~~p~  236 (369)
                      ++.+.+-+...-.|-.+++++.|..+..+  ++.+ .+.+.+|+++.++.+|....+-|.
T Consensus       377 EipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~  436 (491)
T d1vg0a1         377 ELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  436 (491)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence            78888888888899999999999987653  3333 466788999999999998766553

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.10  E-value=0.032  Score=39.31  Aligned_cols=74  Identities=16%  Similarity=0.052  Sum_probs=50.7

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEE
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTY  214 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  214 (369)
                      ..++++|+|+|.+|..-+..|.+  .|.+|+++.+..          .+.+.+..++.+++++....-            
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~----------~~~~~~~~~~~~i~~~~~~~~------------   66 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTF----------IPQFTVWANEGMLTLVEGPFD------------   66 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSC----------CHHHHHHHTTTSCEEEESSCC------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccC----------ChHHHHHHhcCCceeeccCCC------------
Confidence            46899999999999999999885  389999986533          345555566667777643211            


Q ss_pred             EcCCCcEEeccEEEEcCCCCC
Q 046865          215 LTSTGDTIKADCHFLCTGKPV  235 (369)
Q Consensus       215 ~~~~g~~i~~d~vi~a~G~~p  235 (369)
                         ...-..++.++.|++-..
T Consensus        67 ---~~dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1          67 ---ETLLDSCWLAIAATDDDT   84 (113)
T ss_dssp             ---GGGGTTCSEEEECCSCHH
T ss_pred             ---HHHhCCCcEEeecCCCHH
Confidence               011124678888877653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.08  E-value=0.0084  Score=42.55  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|+|||+|..|..-|+.|. .|.+|+++++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            4689999999999999999885 599999998754

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.02  E-value=0.011  Score=44.01  Aligned_cols=34  Identities=24%  Similarity=0.478  Sum_probs=29.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      .+++|.|||+|..|.++|+.|. ++  .+++|+|.++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4679999999999999999886 34  5899999865

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.01  Score=46.51  Aligned_cols=34  Identities=38%  Similarity=0.535  Sum_probs=29.8

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      -++|.|||+|..|...|..++ .|++|+++|+++.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            479999999999999997765 6999999999763

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.75  E-value=0.025  Score=47.85  Aligned_cols=39  Identities=28%  Similarity=0.473  Sum_probs=34.0

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ....++|||+|+.|+.+|..|+++.++.+|+++++.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            345799999999999999999876779999999998654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.75  E-value=0.0098  Score=46.50  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=30.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      .+.+|.|||+|.-|.+.|..|. .|.+|+|..+++.
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            3468999999999999999987 4789999998753

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.61  E-value=0.014  Score=47.74  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=30.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      ..|+|||+|+.|+.+|..++++  +.+|+++++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~--G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence            4699999999999999999853  8999999998654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.015  Score=49.84  Aligned_cols=59  Identities=15%  Similarity=0.199  Sum_probs=43.1

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccccc---------C--C------cchHHHHHHHHHhCCcEEEe
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------I--G------PKAGDKTLDWLISKKVDVKL  198 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~---------~--~------~~~~~~~~~~l~~~gv~i~~  198 (369)
                      .|+|||+|++|+-.|..|+++  |.+|+++++++++...         .  +      ......+.+.+++.|++...
T Consensus         1 DViVIGaG~aGL~aA~~L~~~--G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~   76 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYK   76 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT--TCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCccee
Confidence            489999999999999999864  8999999998765321         0  0      01235667778888876543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=94.56  E-value=0.015  Score=47.35  Aligned_cols=34  Identities=35%  Similarity=0.670  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .|+|||+|++|+-+|..|++  .|.+|+++++++.+
T Consensus         4 DViIIGaG~aGl~aA~~la~--~G~~V~liEk~~~~   37 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKL   37 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            58999999999999999985  48999999987654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.42  E-value=0.024  Score=42.37  Aligned_cols=38  Identities=21%  Similarity=0.492  Sum_probs=32.3

Q ss_pred             cCCCcceEEEEC-CChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865            9 SEGKNKRVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus         9 ~~~~~~~vvIIG-gG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ++...++|.||| .|.-|.+.|+.|+ .|++|+++|++..
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            445568999999 6999999999996 5999999998753

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.41  E-value=0.021  Score=45.87  Aligned_cols=34  Identities=32%  Similarity=0.491  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      .++|||+||.|+.+|..+++  .+.+|+++++.+.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~--~G~~V~viE~~~~~   41 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCCC
Confidence            58999999999999999985  48999999987654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.027  Score=39.86  Aligned_cols=35  Identities=14%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             CcceEEEECCC-----------hHHHHHHHHccc-CCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGG-----------VAGSLVAKSLQF-SADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG-----------~aGl~aA~~l~~-g~~V~lie~~~~   46 (369)
                      ..++|+|||+|           +++..|+++|++ |++++||..|+.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            46799999999           577888888874 999999998863

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.30  E-value=0.0011  Score=48.89  Aligned_cols=54  Identities=13%  Similarity=0.020  Sum_probs=33.7

Q ss_pred             CCCcEEEEeecCCCceEE----------cCccc-----c-cccccceecccccchHHHHHHcCCCCCccCC
Q 046865          315 PHSAIAIVSLGRKDAVAQ----------LPFMT-----T-IGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA  369 (369)
Q Consensus       315 ~~~~~~~v~lg~~~~~~~----------~~~~~-----~-~g~~~~~~k~~~~~~~~~~~ilG~~~~~~~~  369 (369)
                      .+|+++.||+++.++..+          ..+..     . .....++.|. .+..+++++|||+|++|-||
T Consensus        10 T~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~ILGa~ivg~~A   79 (133)
T d1h6va3          10 TPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKV-ICNLKDNERVVGFHVLGPNA   79 (133)
T ss_dssp             SSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEE-EEEGGGTTEEEEEEEESTTH
T ss_pred             CcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEE-EEEecCcccEEEEEEeCCCH
Confidence            479999999987666321          11111     1 1223344443 14456899999999999875

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.025  Score=40.52  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=29.6

Q ss_pred             CCcceEEEECCCh-----------HHHHHHHHccc-CCcEEEEcCCCC
Q 046865           11 GKNKRVVVIGGGV-----------AGSLVAKSLQF-SADVTLIDPKEY   46 (369)
Q Consensus        11 ~~~~~vvIIGgG~-----------aGl~aA~~l~~-g~~V~lie~~~~   46 (369)
                      ...++|+|||+|+           ++..|+++|++ |+++++|..|+.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            4568999999985           67777788874 999999998863

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.26  E-value=0.018  Score=44.81  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=28.8

Q ss_pred             cceEEEECCChHHHHHHHHc-ccCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l-~~g~~V~lie~~~   45 (369)
                      -++|.|||+|..|...|..+ ..|++|+++|+++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            46899999999999999655 5799999999975

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.22  E-value=0.024  Score=45.37  Aligned_cols=35  Identities=31%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~  173 (369)
                      -.++|||+|+.|+.+|..+++  .+.+|.++++.+.+
T Consensus         6 yDviVIG~GpAGl~aA~~aa~--~G~kV~lie~~~~~   40 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSS
T ss_pred             cCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCc
Confidence            368999999999999999985  49999999987654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.17  E-value=0.02  Score=47.22  Aligned_cols=32  Identities=28%  Similarity=0.548  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .|+|||+|.+|+-+|.+|+++  |.+|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~--G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKE--NKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            599999999999999999964  89999999864

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.01  E-value=0.032  Score=40.43  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=32.8

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCCcc
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~~~   48 (369)
                      +.++|+|||||-+.+..|..|++ -.+|+||-|++.+.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r   70 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR   70 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc
Confidence            46899999999999999999986 67899999988764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.025  Score=44.14  Aligned_cols=37  Identities=27%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~  175 (369)
                      ++|.|+|+|..|..+|..++.  .|.+|+++++++..+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHHH
Confidence            789999999999999998884  4999999999876544

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.83  E-value=0.027  Score=42.69  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=28.6

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|.|||.|..|.+.|+.|+ +|++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            47999999999999999886 699999999874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.73  E-value=0.027  Score=41.95  Aligned_cols=35  Identities=37%  Similarity=0.555  Sum_probs=29.1

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      ....+|.|||+|..|.++|+.|. ++  -++.|+|.++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            44679999999999999999885 34  4899999865

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.66  E-value=0.12  Score=37.34  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      +|+|+|+|.+|..++..|.+  .+.+|++++.++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCCcceecCCh
Confidence            68999999999999999985  389999998765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.57  E-value=0.059  Score=39.01  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT  216 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~  216 (369)
                      |+++|+|.|..|..+|..|.+.  |.+|++++.++            ...+.+++.+..++.+-. +     +..  +..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~------------~~~~~~~~~~~~~~~gd~-~-----~~~--~l~   58 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINE------------EKVNAYASYATHAVIANA-T-----EEN--ELL   58 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCH------------HHHHHTTTTCSEEEECCT-T-----CTT--HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcH------------HHHHHHHHhCCcceeeec-c-----cch--hhh
Confidence            5799999999999999999853  89999998765            222345567776655421 1     100  000


Q ss_pred             CCCcEEeccEEEEcCCCC
Q 046865          217 STGDTIKADCHFLCTGKP  234 (369)
Q Consensus       217 ~~g~~i~~d~vi~a~G~~  234 (369)
                      .-| --.+|.++++++..
T Consensus        59 ~a~-i~~a~~vi~~~~~~   75 (134)
T d2hmva1          59 SLG-IRNFEYVIVAIGAN   75 (134)
T ss_dssp             HHT-GGGCSEEEECCCSC
T ss_pred             ccC-CccccEEEEEcCch
Confidence            111 23578999998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.041  Score=41.04  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++-+|||+|.|..|...+..|. .|.+|++||.++
T Consensus         2 ~knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            3568999999999999999986 599999999865

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.054  Score=37.94  Aligned_cols=35  Identities=29%  Similarity=0.352  Sum_probs=30.9

Q ss_pred             CcceEEEECCChHHHHHHHHccc-CCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~   46 (369)
                      ...+|.|||||.=|...|..+++ |+++.++|+++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            35689999999999999998875 999999998764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.33  E-value=0.035  Score=45.88  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .++|||+|.+|+-+|..|+++  |.+|+++++.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~--G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            489999999999999999964  89999999864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.31  E-value=0.019  Score=44.70  Aligned_cols=38  Identities=13%  Similarity=0.184  Sum_probs=32.1

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcccc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l  174 (369)
                      +-+++.|||+|..|..+|..++.  .|.+|+++++++.-+
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l   40 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINEHGI   40 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHH
Confidence            34789999999999999988874  499999999887544

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.30  E-value=0.04  Score=40.62  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=26.7

Q ss_pred             ceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~~   46 (369)
                      .+|.|||+|..|.++|+.|. ++  -++.|+|.++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            58999999999999998875 44  48999997653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.27  E-value=0.034  Score=46.59  Aligned_cols=32  Identities=31%  Similarity=0.656  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCC-CeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~-~~v~lv~~~~  171 (369)
                      +|+|||+|.+|+-+|..|+++  | .+|+|+++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~--G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTR--GWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHc--CCCcEEEEeCCC
Confidence            699999999999999999863  5 5799999874

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.25  E-value=0.037  Score=40.98  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=27.2

Q ss_pred             ceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      ++|.|||+|..|.++|+.|. ++  -+++|+|.++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            68999999999999999875 44  4899999864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.24  E-value=0.039  Score=40.66  Aligned_cols=33  Identities=36%  Similarity=0.526  Sum_probs=27.6

Q ss_pred             ceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~~   46 (369)
                      ++|.|||+|..|.++|+.|. ++ .++.++|.++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            58999999999999998875 34 48999997653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.00  E-value=0.055  Score=41.19  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .++|+|+|+|.+|..+|..|.+.  +.+|+++.|+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCh
Confidence            57899999999999999999854  88999999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.95  E-value=0.04  Score=42.43  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=27.7

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~   44 (369)
                      ++|.|||+|.-|.+.|..|. .|.+|+|+.+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            58999999999999999987 58999999763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.87  E-value=0.051  Score=40.84  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      .+.+|.|||+|..|.++|+.|. ++  -++.|+|.++
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4568999999999999999885 34  4899999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.72  E-value=0.044  Score=41.61  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=29.2

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ....|+|+|+|+.|+.++..++ .|.+|+++|+++
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            3468999999999999998775 589999999875

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.68  E-value=0.069  Score=42.68  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      .++|||+|+.|+.+|..+++  .|.+|.+++..+.
T Consensus         5 DviVIG~GpaGl~aA~~aa~--~G~kV~viE~~~~   37 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAK--FDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGG--GCCCEEEECCCCC
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence            58999999999999999884  4999999997653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.22  Score=36.80  Aligned_cols=80  Identities=11%  Similarity=0.153  Sum_probs=52.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEE
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYL  215 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~  215 (369)
                      ..+++|+|.|..|..++..|.+.  +.++++++..+        +......+.+...|+.++.+-....-       .+.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~--------~~~~~~~~~~~~~~~~vi~Gd~~d~~-------~L~   65 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQR--GQNVTVISNLP--------EDDIKQLEQRLGDNADVIPGDSNDSS-------VLK   65 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCC--------HHHHHHHHHHHCTTCEEEESCTTSHH-------HHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEeccc--------hhHHHHHHHhhcCCcEEEEccCcchH-------HHH
Confidence            45799999999999999999853  88999998654        33344445566678988876322110       000


Q ss_pred             cCCCcEEeccEEEEcCCCC
Q 046865          216 TSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       216 ~~~g~~i~~d~vi~a~G~~  234 (369)
                       .-| --++|.+|.+++..
T Consensus        66 -~a~-i~~a~~vi~~~~~d   82 (153)
T d1id1a_          66 -KAG-IDRCRAILALSDND   82 (153)
T ss_dssp             -HHT-TTTCSEEEECSSCH
T ss_pred             -Hhc-cccCCEEEEccccH
Confidence             001 12578888887653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.67  E-value=0.056  Score=42.79  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .++|||+||.|+..|..+++.  +.+|.++++..
T Consensus         5 DviIIGgGpAGl~aA~~aar~--G~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH--TCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCeEEEEeccc
Confidence            589999999999999998854  89999999754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.055  Score=41.16  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=28.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      ....|+|+|+|+.|+.++..++ .|. +|+++|+++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            3458999999999999998876 577 799999875

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.39  E-value=0.052  Score=40.01  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=27.1

Q ss_pred             ceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      .+|.|||+|..|.++|+.|. ++  -++.|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            58999999999999998875 44  4899999764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.38  E-value=0.061  Score=40.77  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=29.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ....|+|+|+|+.|+.++..++ .|.+|+++++++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            4568999999999999988775 5999999998753

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.061  Score=40.90  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|+|+|+|-++-++++.|. .|.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4679999999999999999986 588999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.09  E-value=0.064  Score=40.48  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=29.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ...+|+|+|+|+.|+.++..++ .|.+|+.+|+++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            4568999999999999988775 589999999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.085  Score=34.13  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             ceEEEECCChHHHHHHHHccc-CCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~-g~~V~lie~~~~   46 (369)
                      +.|.|||||-=|-..+.+.++ |+++.++|+++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            689999999999999998875 999999998754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=92.00  E-value=0.079  Score=40.52  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=29.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      +++.|+|+|..|.-+|..|.+.  |.+|+++.|.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCH
Confidence            7899999999999999999863  89999998865

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.87  E-value=0.069  Score=44.71  Aligned_cols=33  Identities=27%  Similarity=0.392  Sum_probs=29.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      -.|+|||+|+.|+-.|..+++  .|.+|.|+++.+
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~--~G~~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATD--SGAKVILIEKEP   49 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            369999999999999999986  489999999865

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=91.77  E-value=0.075  Score=39.06  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=27.6

Q ss_pred             ceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~~   46 (369)
                      ++|.|||+|..|.++|+.|. .+  -+++|+|.++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            47999999999999998875 33  58999998764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.57  E-value=1.1  Score=29.93  Aligned_cols=78  Identities=12%  Similarity=0.091  Sum_probs=54.4

Q ss_pred             hcCCeEEEEcCChhHHHH-HHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCe
Q 046865          134 KSARSILIVGGGPTGVEL-AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSD  212 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~-a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~  212 (369)
                      ...+++-++|-|-+|+-. |..|.++  |.+|+-.+....           ...+.|++.|++++.+.....+.      
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~-----------~~~~~L~~~Gi~v~~g~~~~~i~------   66 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADG-----------VVTQRLAQAGAKIYIGHAEEHIE------   66 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCS-----------HHHHHHHHTTCEEEESCCGGGGT------
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCC-----------hhhhHHHHCCCeEEECCccccCC------
Confidence            457889999988888665 7777754  899998876531           33356677899998876543321      


Q ss_pred             EEEcCCCcEEeccEEEEcCCCCCCchhh
Q 046865          213 TYLTSTGDTIKADCHFLCTGKPVGSDWL  240 (369)
Q Consensus       213 ~v~~~~g~~i~~d~vi~a~G~~p~~~~l  240 (369)
                                .+|.||.+++...+.+.+
T Consensus        67 ----------~~d~vV~S~AI~~~npel   84 (96)
T d1p3da1          67 ----------GASVVVVSSAIKDDNPEL   84 (96)
T ss_dssp             ----------TCSEEEECTTSCTTCHHH
T ss_pred             ----------CCCEEEECCCcCCCCHHH
Confidence                      247899998887655433

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.56  E-value=0.073  Score=41.02  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=27.8

Q ss_pred             ceEEEE-CCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVI-GGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvII-GgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|.|| |+|.-|.+.|..|. .|++|++.+|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999 66999999999886 599999999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.42  E-value=0.18  Score=37.17  Aligned_cols=37  Identities=11%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ..++|.|||+|.+|.-+|..+.......++.|++..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            4578999999999999999988765566899998655

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.42  E-value=0.089  Score=45.12  Aligned_cols=33  Identities=33%  Similarity=0.553  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      .++|||+|+.|+-+|..|++  .+.+|.+++++..
T Consensus         6 DviIVGsG~aG~v~A~~La~--~G~kVlvLEaG~~   38 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVG--AGYKVAMFDIGEI   38 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCC
T ss_pred             cEEEECcCHHHHHHHHHHhh--CCCeEEEEecCCC
Confidence            58999999999999999996  4899999998753

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.36  E-value=0.085  Score=38.73  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=26.9

Q ss_pred             ceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      ++|.|||+|..|.++|+.|. ++  -++.|+|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            48999999999999999875 34  4799999765

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.35  E-value=0.097  Score=44.94  Aligned_cols=32  Identities=13%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .|+|||+|+.|+-+|..|++  .|.+|.+++++.
T Consensus         4 ~VIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHH--CcCeEEEEecCC
Confidence            58999999999999999986  489999999974

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=91.29  E-value=0.41  Score=35.02  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ..++.|||+|.+|.-+|..|.......++.++++.+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            468999999999999999998765557899998764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.23  E-value=0.094  Score=45.53  Aligned_cols=37  Identities=30%  Similarity=0.561  Sum_probs=31.0

Q ss_pred             CeEEEEcCChhHHHHHHHHhh----hCCCCeEEEEEcCccc
Q 046865          137 RSILIVGGGPTGVELAGEIAV----DFPEKKVTLVHKGSRL  173 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~----~~~~~~v~lv~~~~~~  173 (369)
                      -.|+||||||.|+-+|..|++    ...|.+|.|++++..+
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            479999999999999998874    1358999999998654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.10  E-value=0.074  Score=38.19  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=25.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc--cCCc-EEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ--FSAD-VTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~--~g~~-V~lie~~~   45 (369)
                      ++++|+|+|||.+|.+.+.++.  .+++ |..||.++
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            4679999999999999998775  3555 44666544

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.03  E-value=0.15  Score=37.51  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+++.|||+|.+|.-+|..+..+....++.|++..+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            378999999999999999888654456888887654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.13  Score=38.58  Aligned_cols=33  Identities=15%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      +|+|+|+|.+|.-+|..|.+  .|.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCK--QGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHH--CCCceEEEEcCHH
Confidence            68999999999999999985  4899999998764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=90.80  E-value=0.1  Score=44.00  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=29.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      -.|+|||+|+.|+-.|..+++  .|.+|.++++.+.
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~--~G~~V~llEk~~~   57 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPI   57 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHT--TTCCEEEECSSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence            469999999999999999985  4899999998653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=90.71  E-value=0.11  Score=44.72  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .++|||+|+.|+-+|..|++  .|.+|.+++++.
T Consensus         9 dvIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            58999999999999999986  389999999863

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=90.69  E-value=0.11  Score=39.34  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      ..++|+|+|+|-++-++++.|. .|. +|+|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4678999999999999999996 474 899998864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.64  E-value=0.095  Score=37.64  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=27.6

Q ss_pred             ceEEEECCChHHHHHHHHcccCCcEEEEcCCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~~~   46 (369)
                      +++||+|.|..|..++..|+ +.+|.+||.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~-~~~i~vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR-GSEVFVLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC-GGGEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHc-CCCCEEEEcchH
Confidence            47999999999999999995 678899988653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.64  E-value=0.097  Score=38.56  Aligned_cols=32  Identities=34%  Similarity=0.466  Sum_probs=26.8

Q ss_pred             ceEEEECC-ChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           14 KRVVVIGG-GVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGg-G~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      ++|.|||+ |..|.++|+.|. ++  .++.|+|.++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            47999996 999999999885 44  4899999864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.62  E-value=0.9  Score=29.91  Aligned_cols=75  Identities=12%  Similarity=0.007  Sum_probs=50.3

Q ss_pred             eEEEEcCChhHHH-HHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCCeEEEc
Q 046865          138 SILIVGGGPTGVE-LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLT  216 (369)
Q Consensus       138 ~v~vvG~G~~g~e-~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~  216 (369)
                      ++-++|-|-+|+- +|..|.+  .|.+|+-.++.+.           ...+.|++.|++++.+.....+           
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~--~G~~VsGSD~~~~-----------~~t~~L~~~Gi~i~~gh~~~~i-----------   58 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFS--NGNDVYGSNIEET-----------ERTAYLRKLGIPIFVPHSADNW-----------   58 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEECSSCC-----------HHHHHHHHTTCCEESSCCTTSC-----------
T ss_pred             EEEEEeECHHHHHHHHHHHHh--CCCeEEEEeCCCC-----------hhHHHHHHCCCeEEeeeccccc-----------
Confidence            5667887777764 4666664  4899988875431           3444689999999876433221           


Q ss_pred             CCCcEEeccEEEEcCCCCCCchhhc
Q 046865          217 STGDTIKADCHFLCTGKPVGSDWLK  241 (369)
Q Consensus       217 ~~g~~i~~d~vi~a~G~~p~~~~l~  241 (369)
                           ..+|.||++++.+.+.+.+.
T Consensus        59 -----~~~d~vV~SsAI~~~npel~   78 (89)
T d1j6ua1          59 -----YDPDLVIKTPAVRDDNPEIV   78 (89)
T ss_dssp             -----CCCSEEEECTTCCTTCHHHH
T ss_pred             -----CCCCEEEEecCcCCCCHHHH
Confidence                 13689999999876655443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.58  E-value=0.13  Score=37.98  Aligned_cols=33  Identities=27%  Similarity=0.551  Sum_probs=27.1

Q ss_pred             cceEEEECCChHHHHHHHHccc-C-CcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g-~~V~lie~~~   45 (369)
                      +.+|.|||+|..|.++|+.|.. + .++.|+|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4689999999999999987653 2 4899999865

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.55  E-value=0.079  Score=40.68  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=28.1

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      ..+|+|+|+|+.|+.++..++ .|. +|+++|+++
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCEEEEECCCccchhheeccccccccccccccccc
Confidence            468999999999999998775 586 799999875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.51  E-value=0.21  Score=34.71  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=29.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      ..++.|+|||..|..++.+..  ..|.++.++++++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~--~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQ--RLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHH--TTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHH--HCCCEEEEEcCCCC
Confidence            357999999999999998766  46999999998753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.29  E-value=0.13  Score=39.21  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=28.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      ....|+|+|+|+.|+.++..++ .|. +|+++|+++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            3568999999999999998886 475 799999865

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.19  E-value=0.21  Score=35.06  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=27.1

Q ss_pred             cCCeEEEEcCChh-----------HHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          135 SARSILIVGGGPT-----------GVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       135 ~~~~v~vvG~G~~-----------g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      ..++++|+|+|+.           ++.++..|++  .|.++.++...|.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~--~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE--DGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH--TTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHh--cCCeEEEEecChh
Confidence            4578999999864           5666777775  4889999987754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.18  E-value=0.31  Score=36.41  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=27.5

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      +|.|||.|..|.-+|..|.+  .|.+|+.++|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHH--CCCEEEEEECCc
Confidence            58999999999999999985  488999887764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.08  E-value=0.13  Score=37.57  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=26.7

Q ss_pred             ceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      ++|.|||+|..|.++|+.|. ++  .++.|+|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            48999999999999998775 33  5899999764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.07  E-value=0.14  Score=43.02  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=29.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      -.|+|||+|+.|+-.|..+++.  |.+|.++++.+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKA--GANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            4599999999999999999865  89999999865

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.75  E-value=0.28  Score=36.86  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=28.1

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      +++.|||.|.+|.-+|..|.+.....+|+.+++++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            46999999999999999998654456787776653

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.72  E-value=0.13  Score=37.72  Aligned_cols=31  Identities=29%  Similarity=0.418  Sum_probs=26.0

Q ss_pred             eEEEECC-ChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           15 RVVVIGG-GVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        15 ~vvIIGg-G~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      +|.|||| |..|.++|+.|. ++  -+++|+|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 999999999886 34  4799999764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.15  Score=39.72  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=28.5

Q ss_pred             cceEEEECC-ChHHHHHHHHc-ccCCcEEEEcCCC
Q 046865           13 NKRVVVIGG-GVAGSLVAKSL-QFSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~l-~~g~~V~lie~~~   45 (369)
                      +++|+|+|| |..|-.++.+| ++|++|+++.|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            568999996 99999999876 5799999999864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=89.56  E-value=0.14  Score=43.26  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .|+|||+|+.|+-.|..+++  .|.+|.++++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~--~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHT--TTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCCEEEEecCC
Confidence            59999999999999999885  489999999854

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.53  E-value=1  Score=35.14  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=27.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc---------------------cC-CcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ---------------------FS-ADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~---------------------~g-~~V~lie~~~~   46 (369)
                      ..++|||||+|-.++=||+.|.                     .+ .+|+++-|+..
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            3579999999999999997653                     23 47999998754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=89.43  E-value=0.29  Score=35.70  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      ++.|+|+|.+|.-+|..+.......++.|++..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            58999999999999998886544568999987653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.25  E-value=0.19  Score=42.87  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=29.3

Q ss_pred             CcceEEEECC-ChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++++|+|.|| |+-|-.++..|. +|++|+.+|+..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            5778999997 999999998875 799999998654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.17  E-value=0.18  Score=37.94  Aligned_cols=34  Identities=29%  Similarity=0.340  Sum_probs=28.7

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ....|+|+|+|+.|+.++..++ .|.++++++.++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            3568999999999999998776 599999998764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.63  E-value=0.27  Score=36.68  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=29.2

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGS  171 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~  171 (369)
                      ..++++|+|+|.+|..++..|...  +. +++++.|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~--g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhc--CCcEEEEEcCcH
Confidence            568999999999999999999864  54 788888763

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.56  E-value=0.23  Score=37.71  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~~   45 (369)
                      ....|+|+|+|+.|+.++..++ .|. +|++.|.++
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            3468999999999999998886 476 677888765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.23  E-value=0.19  Score=37.65  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=28.7

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|-+||-|..|...|++|. +|++|.++|+++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            47999999999999999986 589999999864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.01  E-value=0.22  Score=37.42  Aligned_cols=32  Identities=28%  Similarity=0.396  Sum_probs=27.2

Q ss_pred             ceEEEECCChHHHHHHHHcc-cC--CcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g--~~V~lie~~~   45 (369)
                      ++|.|||.|.-|.+.|+.|+ .|  .+|..+|+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            47999999999999999996 35  4788899874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.98  E-value=0.2  Score=38.11  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=28.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~~   46 (369)
                      ...|+|+|+|+.|+.++..++ .| .+|+.+|.++.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            456999999999999998886 46 68999998753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.91  E-value=0.27  Score=37.32  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=28.5

Q ss_pred             CcceEEEECCChHHHHHHHHcccCCcEEEEcCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPK   44 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~g~~V~lie~~   44 (369)
                      +.++|+|+|+|-++-++++.|.+..+|+|+.|+
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDNNIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSSEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHccccceeeehhh
Confidence            467999999999999999998764489999886

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.91  E-value=0.2  Score=37.54  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=28.6

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ....|+|+|+|+.|+.++..++ .|.+|++++.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            4568999999999999887776 588999999765

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=87.89  E-value=0.58  Score=34.76  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ..++.|||+|.+|..+|..+.....-.++.|++..+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            468999999999999999998654556899997654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.88  E-value=0.23  Score=40.94  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=29.6

Q ss_pred             CcceEEEECC-ChHHHHHHHHcc-cCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~l~-~g~~V~lie~~~~   46 (369)
                      ++.+|+|+|| |+.|...+.+|. +|++|+++.|+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            3567999997 999999998874 6999999998643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.87  E-value=0.24  Score=40.58  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=30.5

Q ss_pred             CcceEEEECC-ChHHHHHHHHc-ccCCcEEEEcCCCC
Q 046865           12 KNKRVVVIGG-GVAGSLVAKSL-QFSADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~l-~~g~~V~lie~~~~   46 (369)
                      .+++|+|+|| |+-|-..+.+| ++|++|++++|+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            4689999998 99999999887 47999999998753

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.84  E-value=0.2  Score=37.41  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|-|||-|..|...|..|. .|++|.++|+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            36999999999999999885 699999999874

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.53  E-value=0.66  Score=34.38  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=28.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+|.|+|+|.+|.-+|..+.......++.|++..+
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            46999999999999999888654456899987654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.51  E-value=0.58  Score=34.11  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=27.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGG-GPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~-G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ++.|+|+ |.+|..+|..+..+..-.++.|++..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5899995 999999999888543346899998754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=87.46  E-value=0.3  Score=40.77  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      -.|+|||+|..|+-.|..+++..++.+|.|+++.+
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            46899999999999998888766788999999764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.36  E-value=0.39  Score=34.14  Aligned_cols=47  Identities=15%  Similarity=0.254  Sum_probs=34.8

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeC
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      ++++|+|.|..|.+++..|.    +.+|.+++..+        +..    +.++..|+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~----~~~i~vi~~d~--------~~~----~~~~~~~~~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR----GSEVFVLAEDE--------NVR----KKVLRSGANFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC----GGGEEEEESCT--------THH----HHHHHTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHc----CCCCEEEEcch--------HHH----HHHHhcCcccccc
Confidence            58999999999999999875    45777776554        222    3455678888766

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=87.32  E-value=0.27  Score=37.28  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=29.5

Q ss_pred             cceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+|-|||-|..|...|..|. +|++|.++|+++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            358999999999999999986 699999999875

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=87.18  E-value=0.31  Score=42.18  Aligned_cols=34  Identities=35%  Similarity=0.606  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      .++|||+|..|+-+|..|++ .++.+|.|+++++.
T Consensus        26 D~IIVGsG~aG~vlA~rLae-~~~~~VLlLEaG~~   59 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTE-NPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-STTCCEEEEESSCC
T ss_pred             eEEEECcCHHHHHHHHHHHH-CCCCeEEEEcCCCC
Confidence            58899999999999999985 34579999999864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.13  E-value=0.24  Score=36.49  Aligned_cols=32  Identities=25%  Similarity=0.180  Sum_probs=28.1

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|-|||.|..|...|+.|. .|++|++.++.+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            47999999999999999986 589999998765

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=87.09  E-value=0.27  Score=42.03  Aligned_cols=32  Identities=38%  Similarity=0.669  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .++|||+|..|+-+|..|++.  +.+|.+++++.
T Consensus         4 D~IIVGsG~aG~v~A~rLae~--g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEA--GKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhC--CCeEEEEEccC
Confidence            589999999999999999963  78999999985

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=86.97  E-value=0.79  Score=37.46  Aligned_cols=58  Identities=14%  Similarity=0.146  Sum_probs=40.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeC
Q 046865          136 ARSILIVGG-GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLG  199 (369)
Q Consensus       136 ~~~v~vvG~-G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~  199 (369)
                      .++|+|.|| |.+|..++..|.++  |.+|+.+.|.+....    .........+...+++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~~~~----~~~~~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEVVSN----IDKVQMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCCSSC----HHHHHHHHHHHTTTCEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCCcccc----hhHHHHHhhhccCCcEEEEe
Confidence            467999996 99999999999864  899999988653221    11223344566778887654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.91  E-value=0.19  Score=38.10  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=29.1

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..++|+|+|+|-++-++++.|. .+.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4679999999999999998875 467999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.77  E-value=0.28  Score=37.15  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|-|||-|..|...|++|. +|++|.++|+++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            57999999999999999986 699999999864

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=0.32  Score=35.62  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=25.9

Q ss_pred             ceEEEEC-CChHHHHHHHHcc-c---CCcEEEEcCCC
Q 046865           14 KRVVVIG-GGVAGSLVAKSLQ-F---SADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIG-gG~aGl~aA~~l~-~---g~~V~lie~~~   45 (369)
                      ++|.||| +|..|.++|+.|. +   ..++.|+|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4899999 5999999998774 2   46899999754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.58  E-value=0.65  Score=33.70  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ++.|+|+|.+|..+|..+.....-.++.|++..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            6899999999999999888654456899997655

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.47  E-value=0.87  Score=35.12  Aligned_cols=32  Identities=31%  Similarity=0.299  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      +|.|+|.|++|+-+|..|++.  |.+|+.++..+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCH
Confidence            589999999999999999853  88999998765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.47  E-value=0.26  Score=40.12  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             cceEEEECC-ChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      +++|+|.|| |+.|-..+.+|. +|++|+.+++++
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            467999998 999999999985 699999999864

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.44  E-value=0.28  Score=36.52  Aligned_cols=34  Identities=32%  Similarity=0.404  Sum_probs=30.5

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .-+.++|+|-|..|-.+|..|+ .|.+|++.|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            3578999999999999999997 599999999864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=86.19  E-value=0.76  Score=34.54  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=28.7

Q ss_pred             HHhcCCeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCc
Q 046865          132 KIKSARSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGS  171 (369)
Q Consensus       132 ~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~  171 (369)
                      ..+..++++|+|+|++|+-.++..+  ..+. +|..+++++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak--~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAK--LRGAGRIIGVGSRP   62 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHH--TTTCSCEEEECCCH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhh--cccccccccccchh
Confidence            3567889999999999998887665  3464 687776543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=86.17  E-value=0.36  Score=41.68  Aligned_cols=33  Identities=33%  Similarity=0.588  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .++|||+|..|+-+|..|++ .++.+|.++++++
T Consensus        19 D~IIVGsG~aG~vlA~rLse-~~~~~VLvLEaG~   51 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTE-NPNISVLVIESGS   51 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-STTCCEEEEESSC
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCCeEEEECCCC
Confidence            68999999999999999985 3568999999885

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.04  E-value=0.3  Score=37.73  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=27.4

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~   45 (369)
                      ....|+|+|+|+.|+.++..++ .| .+|+++|.++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            4568999999999999998775 44 4888998764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.01  E-value=0.067  Score=42.78  Aligned_cols=33  Identities=18%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCC----CeEEEEEcC
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPE----KKVTLVHKG  170 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~----~~v~lv~~~  170 (369)
                      +|+|||+|.+|+-.|..|+++...    .+++++.+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            699999999999999999875322    257777654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.99  E-value=0.34  Score=36.49  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=26.9

Q ss_pred             cceEEEECCChHHHHHHHHccc--CCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~--g~~V~lie~~~   45 (369)
                      ...|+|+|+|+.|+.++..++.  +.+|+.+|+++
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            4569999999999999987753  56799999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=85.91  E-value=0.38  Score=35.79  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=28.9

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCC-cEEEEcCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPK   44 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~-~V~lie~~   44 (369)
                      -..++|+|||+|-.|-.++..|. .|. +++++.|.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            35689999999999999999986 576 68899875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=85.50  E-value=0.31  Score=36.22  Aligned_cols=34  Identities=29%  Similarity=0.355  Sum_probs=30.9

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      .-+.++|+|=|..|-.+|.+|+ .|.+|++.|..|
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            3579999999999999999998 599999999875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.07  E-value=0.47  Score=31.89  Aligned_cols=38  Identities=21%  Similarity=0.138  Sum_probs=31.5

Q ss_pred             ccCCCcceEEEECCChHHHHH-HHHcc-cCCcEEEEcCCC
Q 046865            8 QSEGKNKRVVVIGGGVAGSLV-AKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus         8 ~~~~~~~~vvIIGgG~aGl~a-A~~l~-~g~~V~lie~~~   45 (369)
                      ++....++|-+||-|=+|+++ |..|. +|++|+--|...
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            445667899999999999999 66665 699999999864

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=85.05  E-value=0.25  Score=41.68  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=27.8

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .|+|||+|+.|+-.|..++++  |.+|+|+++.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~--G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQS--GQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHT--TCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHc--CCeEEEEeCCC
Confidence            589999999999999999854  88999998753

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=85.01  E-value=1  Score=33.50  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             cCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       135 ~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .|-+++|+|+|..|.+.+....  ..|.+|++++.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~--~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAV--GLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHh--hCCCEEEEEeCcH
Confidence            4789999999999999998766  4699999998764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.70  E-value=0.43  Score=36.33  Aligned_cols=34  Identities=21%  Similarity=0.463  Sum_probs=28.2

Q ss_pred             CcceEEEECCChHHHHHHHHccc-C-CcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~-g-~~V~lie~~~   45 (369)
                      ..++|+|+|+|-++-+++..|.+ | .+++++.|++
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            45799999999999999888863 4 4799999865

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.68  E-value=0.42  Score=40.39  Aligned_cols=41  Identities=24%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             cCCCeEEecccCCccccchhHHHHHHHHHHHHHHHHHhhCC
Q 046865          265 GQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGE  305 (369)
Q Consensus       265 ~~~~i~a~GD~~~~~~~~~~~~A~~~g~~~a~~i~~~~~g~  305 (369)
                      ..+++|++||+++....+....+...++++++++...+...
T Consensus       284 ~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~i~~~  324 (356)
T d1jnra2         284 TVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRFILEQ  324 (356)
T ss_dssp             SSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhcCCccccCccccccccchhHHHHHHHHHcC
Confidence            47899999999876544455667788999999998877643

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.57  E-value=2.7  Score=30.24  Aligned_cols=35  Identities=29%  Similarity=0.587  Sum_probs=27.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHhh-hCCCCeEEEEEcC
Q 046865          136 ARSILIVGG-GPTGVELAGEIAV-DFPEKKVTLVHKG  170 (369)
Q Consensus       136 ~~~v~vvG~-G~~g~e~a~~l~~-~~~~~~v~lv~~~  170 (369)
                      +-+|.|+|+ |++|.|+...|.+ .+|..++..+...
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~   38 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA   38 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence            467999996 9999999998864 3577888877544

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.44  E-value=0.77  Score=34.18  Aligned_cols=38  Identities=13%  Similarity=0.034  Sum_probs=28.8

Q ss_pred             HHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       132 ~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ..+..++++|+|+|.+|.-.++..+  ..|.++..+.+.+
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak--~~Ga~~i~~~~~~   64 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAH--AMGAHVVAFTTSE   64 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSG
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhh--cccccchhhccch
Confidence            3466799999999999987776555  2488887777654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.17  E-value=0.51  Score=30.27  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=27.9

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ++|.|+|||..|-.++.+-.  ..|.++.++++.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~--~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGE--PLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHG--GGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHH--HcCCEEEEEcCCC
Confidence            57899999999999998765  4599999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.13  E-value=0.49  Score=37.38  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=28.3

Q ss_pred             CcceEEEECCChHHHHHHHHccc---------------------C-CcEEEEcCCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQF---------------------S-ADVTLIDPKEY   46 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~~---------------------g-~~V~lie~~~~   46 (369)
                      ..++|||||+|-.++=||+.|.+                     + .+|++|.|+..
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            36899999999999999987754                     2 47888887754

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=83.66  E-value=0.57  Score=35.24  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=25.0

Q ss_pred             cceEEEECCChHHHHHHHH--c-c-c---CCcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKS--L-Q-F---SADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~--l-~-~---g~~V~lie~~~   45 (369)
                      +.+|.|||||..|.+.+..  | + .   +.+++|+|.++
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            4699999999999876542  2 2 1   46999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=83.60  E-value=1.3  Score=32.98  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ...++++|+|+|-++--++..|.+.  +.+|+++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~--g~~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSL--DCAVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhccc--ceEEEeccchH
Confidence            3468999999999998888888753  67899998865

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=83.49  E-value=1.4  Score=36.97  Aligned_cols=62  Identities=15%  Similarity=0.164  Sum_probs=45.6

Q ss_pred             hcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHh-CCcEEEeCceee
Q 046865          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS-KKVDVKLGQRVN  203 (369)
Q Consensus       134 ~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~  203 (369)
                      ...+++.|+|+|..+..-+..+...++-.+|.++.|.+        +-.+.+.+.+++ .|+++..-..+.
T Consensus       126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~--------~~~~~~~~~l~~~~g~~v~~~~s~~  188 (340)
T d1x7da_         126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDP--------LATAKLIANLKEYSGLTIRRASSVA  188 (340)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSH--------HHHHHHHHHHTTCTTCEEEECSSHH
T ss_pred             cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecCh--------HHHHHHHHhhhhccCCCceecCCHH
Confidence            45789999999999988777777666667888888764        555667777765 488876544443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=83.49  E-value=0.84  Score=34.53  Aligned_cols=34  Identities=15%  Similarity=0.176  Sum_probs=28.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      |-+++|+|+|..|...+....  ..|.+|++++.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~--~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAK--RLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHH--HcCCEEEEEeccH
Confidence            679999999999999887665  3699999998765

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=83.16  E-value=0.83  Score=33.14  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       136 ~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      |.++.|||+|.+|.-+|..+..+....++.|++..+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            568999999999999999888655566898887654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.06  E-value=0.51  Score=36.16  Aligned_cols=34  Identities=38%  Similarity=0.436  Sum_probs=29.3

Q ss_pred             CcceEEEECC-ChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGg-G~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ..+.++|.|| |-.|..+|+.|. .|.+|++++|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            5689999995 888999998875 699999999974

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.61  E-value=0.67  Score=34.80  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=26.3

Q ss_pred             CCcceEEEECCChHHHHHHHHcc-cCCcE-EEEcCCC
Q 046865           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADV-TLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGgG~aGl~aA~~l~-~g~~V-~lie~~~   45 (369)
                      ....+|+|+|+|+.|+.++..++ .|.++ ++.|+++
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            34568999999999999998775 46654 5566654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=82.48  E-value=1.6  Score=35.11  Aligned_cols=58  Identities=16%  Similarity=0.138  Sum_probs=40.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEe
Q 046865          136 ARSILIVGG-GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKL  198 (369)
Q Consensus       136 ~~~v~vvG~-G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~  198 (369)
                      .++|+|.|+ |.+|-.++..|.+.  |.+|+.+.|.+.....   .......+.+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~--G~~V~~l~R~~~~~~~---~~~~~~~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVRESTASSN---SEKAQLLESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCCCTTTT---HHHHHHHHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEECCCccccc---hhHHHHHHhhccCCcEEEE
Confidence            478999996 99999999999864  8899999987643221   1122333456667787754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=82.36  E-value=0.66  Score=34.89  Aligned_cols=34  Identities=12%  Similarity=0.116  Sum_probs=28.0

Q ss_pred             CcceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCC
Q 046865           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (369)
Q Consensus        12 ~~~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~   45 (369)
                      ....|+|+|+|+.|+.++..++ .| .+|+.+|.++
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            3457999999999999998886 46 4788998865

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.35  E-value=0.69  Score=33.92  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=27.5

Q ss_pred             ceEEEECCChHHHHHHHHcc-cCCcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g~~V~lie~~~   45 (369)
                      ++|.|||+|--|.+.|..|. .++++++.+++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            47999999999999998875 589999998863

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=82.32  E-value=0.61  Score=33.87  Aligned_cols=30  Identities=23%  Similarity=0.485  Sum_probs=24.8

Q ss_pred             eEEEEC-CChHHHHHHHHcc-cC--CcEEEEcCC
Q 046865           15 RVVVIG-GGVAGSLVAKSLQ-FS--ADVTLIDPK   44 (369)
Q Consensus        15 ~vvIIG-gG~aGl~aA~~l~-~g--~~V~lie~~   44 (369)
                      +|.||| +|..|.++|+.|. ++  -++.|+|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            799999 6999999999885 33  379999953

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=82.26  E-value=0.6  Score=34.21  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=27.1

Q ss_pred             ceEEEECCChHHHHHHHHcc-cC-CcEEEEcCCC
Q 046865           14 KRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (369)
Q Consensus        14 ~~vvIIGgG~aGl~aA~~l~-~g-~~V~lie~~~   45 (369)
                      ++|.+||+|.-|-+.|..|. .+ ++|.+++|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            47999999999999998764 44 8999999874

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.21  E-value=0.69  Score=36.28  Aligned_cols=31  Identities=26%  Similarity=0.470  Sum_probs=25.3

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHK  169 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~  169 (369)
                      .++|||+||.|+.+|..+++. ..+.|.+++.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~-g~k~V~iie~   35 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATL-YKKRVAVIDV   35 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-SCCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHc-CCCEEEEEEe
Confidence            589999999999999988853 3467888875

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=82.18  E-value=0.52  Score=40.03  Aligned_cols=31  Identities=39%  Similarity=0.701  Sum_probs=22.5

Q ss_pred             eEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       138 ~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .++|||+|..|+-+|..|++   ..+|.|+++++
T Consensus        28 D~IIVGsG~aG~vlA~rLae---~~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSE---KYKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTT---TSCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcC---CCCEEEEecCC
Confidence            56777777777777777764   35777787775

>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein AF0103
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.17  E-value=6.6  Score=29.09  Aligned_cols=63  Identities=8%  Similarity=0.051  Sum_probs=48.1

Q ss_pred             CCeEEEEc-CChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCcee
Q 046865          136 ARSILIVG-GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRV  202 (369)
Q Consensus       136 ~~~v~vvG-~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v  202 (369)
                      -++++|.- .|.++.-++..+.    +.++.+++....+-...-.++.+..++.|++.|+++++++.+
T Consensus        33 i~~iVvAStsG~TA~~~~e~~~----g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH~   96 (190)
T d1vp8a_          33 IKHLVVASSYGDTAMKALEMAE----GLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHI   96 (190)
T ss_dssp             CCEEEEECSSSHHHHHHHHHCT----TCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCCT
T ss_pred             CCeEEEEeCCcHHHHHHHHHhc----CCeEEEEecccCCCCCCcccCCHHHHHHHHHcCCEEEEeccc
Confidence            46777654 6788877776552    789999988776655545578888999999999999988765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=81.99  E-value=0.51  Score=37.79  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=28.2

Q ss_pred             cceEEEECCChHHHHHHHHccc-CC-cEEEEcCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPK   44 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g~-~V~lie~~   44 (369)
                      +.+|+|||+|--|-.+|..|.+ |. +++|+|..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            5799999999999999999975 75 89999964

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=81.88  E-value=1.3  Score=33.36  Aligned_cols=37  Identities=16%  Similarity=0.216  Sum_probs=28.4

Q ss_pred             HhcCCeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCc
Q 046865          133 IKSARSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGS  171 (369)
Q Consensus       133 ~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~  171 (369)
                      .+..++++|+|+|++|.-.+...+.  .|. +|+.+++++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~--~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGSP   63 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccchhheecccc--ccccccccccccc
Confidence            3567899999999999887776653  475 788887764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.78  E-value=1.3  Score=32.64  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=29.3

Q ss_pred             HhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          133 IKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       133 ~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      .+..++++|+|+|++|.-.+..++  ..|.+|..+.+.+
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak--~~G~~Vi~~~~~~   61 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYAR--AMGLHVAAIDIDD   61 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHH--HcCCccceecchh
Confidence            466789999999999988777655  3478998887654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=1.4  Score=32.70  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=48.1

Q ss_pred             HhcCCeEEEEcCChhHHHHHHHHhhhCCCC-eEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC
Q 046865          133 IKSARSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS  211 (369)
Q Consensus       133 ~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~-~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  211 (369)
                      ....++++|+|+|++|+-.+..+..  .+. +|.++++.+            .-.+.+++.|.+...+..-......  .
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~--~G~~~Vi~~d~~~------------~rl~~a~~~Ga~~~~~~~~~~~~~~--~   87 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLSA------------TRLSKAKEIGADLVLQISKESPQEI--A   87 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCH------------HHHHHHHHTTCSEEEECSSCCHHHH--H
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHH--cCCceEEeccCCH------------HHHHHHHHhCCcccccccccccccc--c
Confidence            3567899999999999988776653  355 788887654            2223456677765433221110000  0


Q ss_pred             eEEEcCCCcEEeccEEEEcCCCC
Q 046865          212 DTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       212 ~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ..+....|  ..+|.++-|+|..
T Consensus        88 ~~~~~~~g--~g~Dvvid~~G~~  108 (171)
T d1pl8a2          88 RKVEGQLG--CKPEVTIECTGAE  108 (171)
T ss_dssp             HHHHHHHT--SCCSEEEECSCCH
T ss_pred             ccccccCC--CCceEEEeccCCc
Confidence            00000112  2568899998864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.42  E-value=2.5  Score=32.16  Aligned_cols=84  Identities=12%  Similarity=0.098  Sum_probs=49.2

Q ss_pred             HHhcCCeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCccccccCCcchHHHHHHHHHhCCcEEEeCceeeeccCCCCC
Q 046865          132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGS  211 (369)
Q Consensus       132 ~~~~~~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~~l~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  211 (369)
                      ..+..++++|+|+|++|+-.+...+ .....+|..+++.+            .-.+.+++.|.+...+..-..+..    
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak-~~ga~~Vi~~d~~~------------~rl~~a~~~Ga~~~~~~~~~~~~~----   84 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASAR-LLGAAVVIVGDLNP------------ARLAHAKAQGFEIADLSLDTPLHE----   84 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESCH------------HHHHHHHHTTCEEEETTSSSCHHH----
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHH-hhcccceeeecccc------------hhhHhhhhccccEEEeCCCcCHHH----
Confidence            4567899999999999977776554 34455788887654            222456677877654432111110    


Q ss_pred             eEEEcCCCcEEeccEEEEcCCCC
Q 046865          212 DTYLTSTGDTIKADCHFLCTGKP  234 (369)
Q Consensus       212 ~~v~~~~g~~i~~d~vi~a~G~~  234 (369)
                      ....+.+|  .-+|.++-|+|..
T Consensus        85 ~i~~~t~g--~g~D~vid~vG~~  105 (195)
T d1kola2          85 QIAALLGE--PEVDCAVDAVGFE  105 (195)
T ss_dssp             HHHHHHSS--SCEEEEEECCCTT
T ss_pred             HHHHHhCC--CCcEEEEECcccc
Confidence            00011222  2368888888854

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=81.28  E-value=1  Score=32.51  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=28.7

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCcc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~~  172 (369)
                      .+|.|||+|.+|..+|..+.......++.|++..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            479999999999999998886555568999987654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=81.06  E-value=0.5  Score=36.25  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=28.2

Q ss_pred             CeEEEEcCChhHHHHHHHHhhhCCCCeEEEEEcCc
Q 046865          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (369)
Q Consensus       137 ~~v~vvG~G~~g~e~a~~l~~~~~~~~v~lv~~~~  171 (369)
                      ++|+|+|+|..|.-+|..|.+  .+.+|+++.|.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~--~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSK--KCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHH--cCCeEEEEEecH
Confidence            469999999999999999984  377999998764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=80.95  E-value=0.79  Score=34.38  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=27.3

Q ss_pred             cceEEEECCChHHHHHHHHccc-C-CcEEEEcCCC
Q 046865           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (369)
Q Consensus        13 ~~~vvIIGgG~aGl~aA~~l~~-g-~~V~lie~~~   45 (369)
                      ...|+|+|+|..|+.++..++. + .+|+.++.++
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            4579999999999999988763 4 6899999865

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=80.67  E-value=0.75  Score=34.70  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=25.9

Q ss_pred             CCcceEEEECC-ChHHHHHHHHccc----C----CcEEEEcCCC
Q 046865           11 GKNKRVVVIGG-GVAGSLVAKSLQF----S----ADVTLIDPKE   45 (369)
Q Consensus        11 ~~~~~vvIIGg-G~aGl~aA~~l~~----g----~~V~lie~~~   45 (369)
                      .+.-+|.|+|| |..|.++++.|..    |    ..+.|+|...
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~   65 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER   65 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc
Confidence            34568999996 9999999998863    2    2566666543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.01  E-value=0.79  Score=38.48  Aligned_cols=32  Identities=31%  Similarity=0.384  Sum_probs=28.1

Q ss_pred             cceEEEECC-ChHHHHHHHHc-ccCCcEEEEcCC
Q 046865           13 NKRVVVIGG-GVAGSLVAKSL-QFSADVTLIDPK   44 (369)
Q Consensus        13 ~~~vvIIGg-G~aGl~aA~~l-~~g~~V~lie~~   44 (369)
                      .++|+|.|| |+.|-..+..| ++|++|+.+|+-
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            479999998 99999999887 579999999964