Citrus Sinensis ID: 046895

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
KSRPKLNLKILFQAFLCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPVDGDITTTKKEEKIEETIK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHEEEEEEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHEEEEccHHHHHHcccccccccccccccEEEEccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
KSRPKLNLKILFQAFLCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLihsnghvaslhadpgKRFLGALFALGSCFGYAIWLVIQAKmseeypcqfssTALMCVMGAIQAVVFALCMEkdwsqwklgwnIRLLTVAYSGIVASGLMVTLISWCvrtrgplfasifNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLwgkgkemkkitqlvpakingessksIEIVItspvdgditttKKEEKIEETIK
Flexible Loop (DISEMBL)
ksrpklnlKILFQAFLCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLvpakingessksieivitspvdgditttkkeekieetik
Low Complexity Region (SEG)
KSRPKLNLKILFQAFLCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPlmlvvvailsslilDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPVDGDitttkkeekieetik
Disordered region (IsUnstruct)
*****LNLKILFQAFLCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKIN******IEIVIT*********************
Disordered Region (DISOPRED)
***PKLNLKILFQAFLCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWS*********************RFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG**************************************************
Disordered Region (DISEMBL)
KSRPKLNLKILFQAFLCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPVDGDITTTK**********
Disordered Region (DISPRO)
*SRPKLNLKILFQAFLCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWST*******************KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGK***********************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KSRPKLNLKILFQAFLCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPVDGDITTTKKEEKIEETIK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
F4HVM3	356	WAT1-related protein At1g	yes	no	0.858	0.662	0.415	2e-53
Q4PT23	355	WAT1-related protein At1g	no	no	0.88	0.681	0.403	4e-51
Q8GXB4	374	WAT1-related protein At1g	no	no	0.949	0.697	0.337	6e-43
Q9SUF1	384	WAT1-related protein At4g	no	no	0.76	0.544	0.380	1e-40
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.810	0.586	0.380	3e-40
Q9FNA5	377	WAT1-related protein At5g	no	no	0.752	0.549	0.4	4e-40
Q9M130	365	WAT1-related protein At4g	no	no	0.792	0.597	0.381	5e-39
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.927	0.621	0.323	7e-39
Q9FL41	402	WAT1-related protein At5g	no	no	0.894	0.611	0.362	9e-38
Q9LV20	383	WAT1-related protein At3g	no	no	0.727	0.522	0.395	3e-37

>sp|F4HVM3|WTR10_ARATH WAT1-related protein At1g68170 OS=Arabidopsis thaliana GN=At1g68170 PE=3 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/236 (41%), Positives = 151/236 (63%)

Query: 16  LCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVAS 75
              L  +E + + +  G AKV G+L G+GGA++  FYRG+EI +WST++NL++     + 
Sbjct: 110 FAALLRMESVRLGSSVGLAKVFGTLFGVGGALVFIFYRGIEIRLWSTHVNLVNQPRDSSR 169

Query: 76  LHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALC 135
                    LGAL   G     ++W ++Q K+S+++   + +  LM +MG + A++ ALC
Sbjct: 170 DATTHHISILGALLVFGGNISISLWFLLQVKISKQFGGPYWNATLMNMMGGVVAMLVALC 229

Query: 136 MEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAIL 195
            E D  +W+LGWNIRLLT+AY+ I+ SG++V + +WC+ +RGPLF S+F+P+ LV+VA++
Sbjct: 230 WEHDLDEWRLGWNIRLLTIAYAAILISGMVVAVNAWCIESRGPLFVSVFSPVGLVIVALV 289

Query: 196 SSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEI 251
            S +LDE LHLGSI+G  +IV  LY VLW K KEMK +          ++SK I +
Sbjct: 290 GSFLLDETLHLGSIIGTVIIVGALYIVLWAKNKEMKSMLTTSDHNETNKTSKDITV 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PT23|WTR6_ARATH WAT1-related protein At1g25270 OS=Arabidopsis thaliana GN=At1g25270 PE=2 SV=1

 Score =  201 bits (511), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 162/243 (66%), Gaps = 1/243 (0%)

Query: 19  LFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHA 78
           +F +E L + +  G+AK++G+L+G  GA++  FY+G+EI+IWST+++L+  + H      
Sbjct: 113 VFRMETLRLGSNEGRAKLVGTLLGACGALVFVFYKGIEIHIWSTHVDLLKGS-HTGRATT 171

Query: 79  DPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEK 138
           +     LG L  LGS    ++WL++QAK+ +E    + +T+LM  +G++  V+ ALC + 
Sbjct: 172 NHHVSILGVLMVLGSNVSTSLWLLLQAKIGKELGGLYWNTSLMNGVGSLVCVIIALCSDH 231

Query: 139 DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL 198
           DW QW+LGW+I LL   YSGIV SG++V L++WC+ T+GPLF ++F+P+ LV+VA++ S 
Sbjct: 232 DWEQWQLGWDINLLATLYSGIVVSGMVVPLVAWCIATKGPLFVTVFSPIRLVIVALIGSF 291

Query: 199 ILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPVD 258
            L+E LHLGSI+GA ++V G+Y V+W K KE K  +         +++K +++   S V+
Sbjct: 292 ALEEPLHLGSIIGAMIMVGGVYLVVWCKMKEKKSASTTSDHIETNKNNKELDLGNLSSVN 351

Query: 259 GDI 261
            D+
Sbjct: 352 RDV 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 165/311 (53%), Gaps = 50/311 (16%)

Query: 1   KSRPKLNLKILFQAFLC---------------------------------------GLFG 21
           K+RPK+ L+IL Q F C                                        +F 
Sbjct: 61  KTRPKITLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFR 120

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNG---HVASLHA 78
            E +GI+  +G+AKV+G+L+ + GAM+L+FY G  I I  + I+  ++     H +S  +
Sbjct: 121 QETVGIKKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWAYAENITKHGSS--S 178

Query: 79  DPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEK 138
                FLG    + +   +A W +IQ KMSE +   ++ST LMC+MG+IQ    AL  + 
Sbjct: 179 GHSNFFLGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDH 238

Query: 139 DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL 198
             S W L   +R ++  Y+G+VAS L   L+SW ++ +GPL+ S+F+PL+LVVVAI S  
Sbjct: 239 TISDWSLSSPLRFISALYAGVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVAIFSWA 298

Query: 199 ILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPA------KINGESSKSIEIV 252
           +L+EKL+ G+ +G+ L+V GLY VLWGK +E+ +  +          K+  ES++ IE  
Sbjct: 299 LLEEKLYTGTFMGSALVVIGLYGVLWGKDREVSEKEEEREKVKQQNHKVKSESNEDIESR 358

Query: 253 ITSPVDGDITT 263
           +     G+ +T
Sbjct: 359 LPVASSGNGST 369

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 133/210 (63%), Gaps = 1/210 (0%)

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPG 81
           +EK+ I     KAK++G+L+G+GGA+++T Y+G  I +  +N N+   NGH  +   D  
Sbjct: 126 MEKVNIAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNN-SQDHN 184

Query: 82  KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWS 141
              +G L  L  C  ++ + V+Q+   + YP   S +AL+C+ GA+Q+   AL +E+  S
Sbjct: 185 NWVVGTLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPS 244

Query: 142 QWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILD 201
            W +GW+ RL    Y+GIV+SG+   +    ++TRGP+F + FNPL +++VA+++S IL 
Sbjct: 245 GWAVGWDARLFAPLYTGIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILH 304

Query: 202 EKLHLGSILGATLIVCGLYAVLWGKGKEMK 231
           E++H G ++G  +I  GLY V+WGKGK+ +
Sbjct: 305 EQIHFGCVIGGAVIAAGLYMVVWGKGKDYE 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 144/234 (61%), Gaps = 11/234 (4%)

Query: 16  LCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINI-WSTNINLIHSNGHVA 74
           L  +FGLE++ +R      KV+G+L  +GGAMI+T  +G  +++ W+  ++  ++ G   
Sbjct: 122 LAYIFGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAG--- 178

Query: 75  SLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFAL 134
               D      GA+     CF YA ++++QA     YP + S TA +C+MG I+    AL
Sbjct: 179 ---TDIHSAIKGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVAL 235

Query: 135 CMEK-DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVA 193
            MEK + S W +GW+ +LLT  YSGIV S L   +    ++TRGP+F + F+PL +++VA
Sbjct: 236 VMEKGNPSAWAIGWDTKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVA 295

Query: 194 ILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSK 247
           I+S++I  E+++LG +LGA +I  GLY V+WGKGK+ K  + L   +++ ES++
Sbjct: 296 IMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKYNSTL---QLDDESAQ 346

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score =  165 bits (417), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 141/215 (65%), Gaps = 8/215 (3%)

Query: 19  LFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINI-WSTNINLIHSNGHVASL- 76
           +F LEK+ I  R  +AK++G+++ IGGAM++TF +G  I + W++N   ++ + H   + 
Sbjct: 118 VFKLEKVTIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLNGHTHAMRIP 177

Query: 77  -HADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALC 135
             AD  +   G++  + SCF ++ ++++QAK+  +Y  + S TALMC+MG ++A V  L 
Sbjct: 178 KQADIAR---GSIMLVASCFSWSCYIILQAKILAQYKAELSLTALMCIMGMLEATVMGLI 234

Query: 136 ME-KDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAI 194
            E K+ S WK+  ++ LL   Y G+V SGL   +I W  + RGP+F S FNPL +V+VAI
Sbjct: 235 WERKNMSVWKINPDVTLLASIYGGLV-SGLAYYVIGWASKERGPVFVSAFNPLSMVLVAI 293

Query: 195 LSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE 229
           LS+ +  EK+++G ++G+ +IV G+Y VLWGK K+
Sbjct: 294 LSTFVFLEKVYVGRVIGSVVIVIGIYLVLWGKSKD 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M130|WTR29_ARATH WAT1-related protein At4g01440 OS=Arabidopsis thaliana GN=At4g01440 PE=2 SV=1

 Score =  161 bits (407), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 142/228 (62%), Gaps = 10/228 (4%)

Query: 19  LFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHA 78
           +F +EKL ++++AG   V+G+LI IGGA++LT Y+GV +    T +  + ++  + + HA
Sbjct: 120 IFRVEKLNMKSKAGMGMVMGALICIGGALLLTMYKGVPL----TKLRKLETHQLINNNHA 175

Query: 79  -DPGKRFLGA--LFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALC 135
             P    +G   LFA  SCFG   W++IQAK++E+YPCQ+SST ++   G IQ  + +L 
Sbjct: 176 MKPENWIIGCVLLFAGSSCFGS--WMLIQAKVNEKYPCQYSSTVVLSFFGTIQCALLSLI 233

Query: 136 MEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAIL 195
             +D + W L   + ++T+ Y+G VA G+     SWC+R RGP+F SIF P+ L+   + 
Sbjct: 234 KSRDITAWILTDKLDIVTIVYAGAVAQGICTVGTSWCIRKRGPIFTSIFTPVGLIFATLF 293

Query: 196 SSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMK-KITQLVPAKIN 242
             LIL  ++ LGS++G+ +++ GLY  L GK + MK +  + +P + N
Sbjct: 294 DFLILHRQIFLGSVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFN 341

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score =  160 bits (406), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 150/303 (49%), Gaps = 48/303 (15%)

Query: 1   KSRPKLNLKILFQAFL---CGLFG------------------------------------ 21
           K RP L L  L Q FL   CG+ G                                    
Sbjct: 72  KERPALTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALR 131

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEI-NIWSTNINLIHSNGHV---ASLH 77
           LEK+ I  R G AK++G++  + GA I+T Y+G  I +IW  N+ +  S         L 
Sbjct: 132 LEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLS 191

Query: 78  ADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCME 137
           A      LG ++ LG+C  ++ W+V+QA + + YP + S T+  C  G IQ ++ A   E
Sbjct: 192 AKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFE 251

Query: 138 KDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSS 197
            D   WK+     L T+ Y+G VASG+  ++  WC+   GP+F +++ P+  + VAI++S
Sbjct: 252 TDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMAS 311

Query: 198 LILDEKLHLGSILGATLIVCGLYAVLWGKGKE-----MKKITQLVPAKINGESSKSIEIV 252
           +IL E+ +LG I GA LI+ GLY VLWGK +E     ++  + +VP        +S  ++
Sbjct: 312 IILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRLGLLQAKSSMVPENQPDNMDQSATLI 371

Query: 253 ITS 255
           I S
Sbjct: 372 INS 374

Pinus taeda (taxid: 3352)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  157 bits (396), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 149/262 (56%), Gaps = 16/262 (6%)

Query: 16  LCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVAS 75
           L  LF +E L ++    +AK+ G+++ + GAM++T Y+G  + ++ T    I  + H  +
Sbjct: 125 LAVLFRMEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANT 184

Query: 76  LHADPGK---RFL-GALFALGSCFGYAIWLVIQAKMSEEYP-CQFSSTALMCVMGAIQAV 130
             +        FL G++  + +   +A   V+QAK+ + Y   Q S T L+C +G +QAV
Sbjct: 185 TSSKNSSSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAV 244

Query: 131 VFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLV 190
                ME + S W++GW++ LL  AYSGIVAS +   +    ++ RGP+FA+ F+PLM+V
Sbjct: 245 AVTFVMEHNPSAWRIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMV 304

Query: 191 VVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIE 250
           +VA++ S +L EK+ LG ++GA LIV GLYAVLWGK KE  ++T    AKI+  S     
Sbjct: 305 IVAVMGSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQKE-NQVTICELAKIDSNSK---- 359

Query: 251 IVITSPVDGDITTTKKEEKIEE 272
                 V  D+     + KI E
Sbjct: 360 ------VTEDVEANGSKMKISE 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 129/215 (60%), Gaps = 15/215 (6%)

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNIN----LIHSNGHVASLH 77
           LE + +  + G AKVLG+L+ IGGA ++T YRG  I     N+     +   N H  +L 
Sbjct: 148 LEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTL- 206

Query: 78  ADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCME 137
                   G L+ +G C  +A W+V+QA + ++YP + + T+  C  G IQ +V AL +E
Sbjct: 207 --------GWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVE 258

Query: 138 KDWSQWKL-GWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILS 196
            D + W +  W   L T+ Y+GI+ASGL+V L +WC+   GP+F ++F PL  ++VA ++
Sbjct: 259 TDLNNWIIVSWE-ELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMA 317

Query: 197 SLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMK 231
            LIL ++L+ G I+GA  I+ GLY VLWGK +E K
Sbjct: 318 FLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERK 352

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
357445673	394	Auxin-induced protein 5NG4 [Medicago tru	0.941	0.657	0.563	1e-91
255580296	385	Auxin-induced protein 5NG4, putative [Ri	0.985	0.703	0.533	1e-85
356525918	405	PREDICTED: auxin-induced protein 5NG4-li	0.978	0.664	0.502	1e-85
356557527	401	PREDICTED: auxin-induced protein 5NG4-li	0.934	0.640	0.537	2e-85
225431613	373	PREDICTED: auxin-induced protein 5NG4-li	0.963	0.710	0.540	3e-85
296088618	366	unnamed protein product [Vitis vinifera]	0.930	0.699	0.549	8e-84
225431611	383	PREDICTED: auxin-induced protein 5NG4-li	0.930	0.668	0.549	9e-84
449511209	392	PREDICTED: auxin-induced protein 5NG4-li	0.927	0.650	0.524	2e-83
449442495	392	PREDICTED: auxin-induced protein 5NG4-li	0.927	0.650	0.524	2e-83
356510721	385	PREDICTED: auxin-induced protein 5NG4-li	0.945	0.675	0.515	1e-82

>gi|357445673|ref|XP_003593114.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355482162|gb|AES63365.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 172/305 (56%), Positives = 215/305 (70%), Gaps = 46/305 (15%)

Query: 1   KSRPKLNLKILFQAFLCGLFG--------------------------------------- 21
             RPKL  ++LF AFLCGLFG                                       
Sbjct: 66  NKRPKLTWRVLFMAFLCGLFGGSLFQNLFYEALALTSATFASAIYNLIPAITFIMAISCG 125

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIH-----SNGHVASL 76
            E+L +R  AGKAKVLG+LIGIGGAM+L F +G+EINIW  +INL+H      N HVAS+
Sbjct: 126 FERLNLRAAAGKAKVLGTLIGIGGAMMLIFLKGLEINIWPFHINLMHPHHQHQNSHVASV 185

Query: 77  HADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCM 136
           HAD G ++LG L A+ SCF +A+WL+IQAKMS+EYP  +SSTALM  MGAIQA  F LC+
Sbjct: 186 HADFGSKWLGVLCAVASCFSFALWLIIQAKMSKEYPSHYSSTALMSTMGAIQATAFGLCV 245

Query: 137 EKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILS 196
           E+DWSQWKLGWNIRLL VAYSG+VASGL+V + SWC++ RGPLFAS+FNPLML+ V I++
Sbjct: 246 ERDWSQWKLGWNIRLLAVAYSGVVASGLVVIVTSWCIKMRGPLFASVFNPLMLLFVTIVA 305

Query: 197 SLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITS- 255
           SL+LDEKL+LGS +GA LIVCGLY VLWGK KEMK+I QLVP+K N + +++I++V+ S 
Sbjct: 306 SLMLDEKLYLGSAIGAVLIVCGLYMVLWGKSKEMKRIAQLVPSK-NTQEAEAIQVVVMST 364

Query: 256 PVDGD 260
           P+  D
Sbjct: 365 PMVDD 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580296|ref|XP_002530977.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223529453|gb|EEF31412.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/317 (53%), Positives = 206/317 (64%), Gaps = 46/317 (14%)

Query: 1   KSRPKLNLKILFQAFLCGLFG--------------------------------------- 21
           K+RPKL   ILFQAF CGLFG                                       
Sbjct: 69  KNRPKLTWTILFQAFFCGLFGGSLSQNMYLESLVLTSATFATAIFNLVPAVTFILAFSFG 128

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLI-----HSNGHVASL 76
           LEK+ IRT  GKAKV+G+L+GI GAM+LTFY+G EINIW T+INLI     H  G  +S 
Sbjct: 129 LEKVEIRTPPGKAKVIGTLLGISGAMLLTFYKGTEINIWRTHINLIKDYQSHEGGLASSD 188

Query: 77  HADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCM 136
           H   G   LG+L A+ +CF YA WL+IQAKMSE YPC +SSTALM  M +IQAVV+ALC+
Sbjct: 189 HHHHGSLALGSLLAVANCFSYAFWLIIQAKMSERYPCPYSSTALMSFMASIQAVVYALCV 248

Query: 137 EKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILS 196
           EKD+ QWKLGWNIRLLT AY+GI  +G+MVTL+ WCVR +GPLF SIF+PL+L+  AI  
Sbjct: 249 EKDFEQWKLGWNIRLLTAAYAGIAVAGIMVTLVIWCVRLKGPLFVSIFSPLLLICTAIAG 308

Query: 197 SLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSP 256
           S++L+E LHLGSILG TLI+CGLY VLW K  EMK ++QLVP K   E  K IE+VI++P
Sbjct: 309 SILLNETLHLGSILGGTLIICGLYGVLWAKSLEMKIVSQLVPFKSCREGEK-IEVVISTP 367

Query: 257 V-DGDITTTKKEEKIEE 272
             D +        K +E
Sbjct: 368 KNDSNFNVENCSAKHDE 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525918|ref|XP_003531568.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/336 (50%), Positives = 217/336 (64%), Gaps = 67/336 (19%)

Query: 1   KSRPKLNLKILFQAFLCGLFG--------------------------------------- 21
             RPK+  ++LF A LCGLFG                                       
Sbjct: 69  NKRPKMTWRVLFMACLCGLFGGSLFQNLFYESLALTSATFASALYNLIPAITFVLAISCG 128

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIH----SNGHVASLH 77
            E+L +R  AG+AKVLG+L+GIGGAM+LTF +G EINIW  +INL+H     N HVASL+
Sbjct: 129 FERLNLRVAAGRAKVLGTLLGIGGAMLLTFIKGAEINIWPFHINLMHPDQHQNSHVASLN 188

Query: 78  ADPGK-RFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCM 136
            D G  + LGA+ +L SCF +A+WL IQAKMS+EYPC +SSTALM   GAIQA  F  C 
Sbjct: 189 TDSGNNKLLGAICSLASCFSFALWLTIQAKMSKEYPCHYSSTALMSTAGAIQATAFGFCF 248

Query: 137 EKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILS 196
           E+D +QWKLGWNIRLL VAYSGIVASG++V + +WC++ RGPLFAS+FNPLMLV+VAI  
Sbjct: 249 ERDLTQWKLGWNIRLLAVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAG 308

Query: 197 SLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIV---I 253
           SL+L+E L++GS++GA LIVCGLY VLWGK KEMK ITQLVP++   E +++IE+V   I
Sbjct: 309 SLMLNENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIRE-AEAIEVVVMSI 367

Query: 254 TSPVD-------------------GDITTTKKEEKI 270
           ++P+D                    D+T  K+E+ I
Sbjct: 368 STPIDYEKCDQNNQGERNVDKEDCDDLTKNKEEDDI 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557527|ref|XP_003547067.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 164/305 (53%), Positives = 211/305 (69%), Gaps = 48/305 (15%)

Query: 1   KSRPKLNLKILFQAFLCGLFG--------------------------------------- 21
             RPK+  ++LF A LCGLFG                                       
Sbjct: 66  NKRPKMTWRVLFMACLCGLFGGSLFQNLFYESLALTSATFASALYNLIPAITFVLAISCG 125

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIH----SNGHVASLH 77
            E+L ++  AGKAKVLG+L+GIGGAM+LTF +G EINIW  +INL+H     NG VASL+
Sbjct: 126 FERLNLKAAAGKAKVLGTLLGIGGAMLLTFIKGAEINIWPFHINLMHPHQHQNGQVASLN 185

Query: 78  ADPGK-RFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCM 136
           AD G  + LGA+ +L SCF +A+WL+IQAKMS+EYPC +SSTALM   GAIQA  F  C 
Sbjct: 186 ADSGNNKLLGAICSLASCFSFALWLIIQAKMSKEYPCHYSSTALMSTAGAIQATAFGFCF 245

Query: 137 EKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILS 196
           E+D +QWKLGWNIRLL VAYSGIVASG++V + +WC++ RGPLFAS+FNPLMLV+VAI  
Sbjct: 246 ERDLTQWKLGWNIRLLAVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAITG 305

Query: 197 SLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVI--- 253
           SL+L+E L++GS++GA LIVCGLY VLWGK KEMK ITQLVP++   E +++IE+V+   
Sbjct: 306 SLMLNENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIRE-AEAIEVVVMPM 364

Query: 254 TSPVD 258
           ++P+D
Sbjct: 365 STPID 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431613|ref|XP_002277101.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 168/311 (54%), Positives = 201/311 (64%), Gaps = 46/311 (14%)

Query: 1   KSRPKLNLKILFQAFLCGLFG--------------------------------------- 21
           KS P+L   I  Q FLCGLFG                                       
Sbjct: 67  KSSPRLTWMIALQGFLCGLFGGALGQNLYLESLALTSPTFSAAMVNLIPAVTFIFAISLG 126

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPG 81
           LEKL IRT AGKAKV G+L+GIGGAM+LTFY+G +INIWST ++L++ + HVA+ H    
Sbjct: 127 LEKLAIRTWAGKAKVGGTLLGIGGAMVLTFYKGPQINIWSTKVHLLNKDQHVAASHRMMD 186

Query: 82  KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWS 141
              LG+L  + SCF YAIWL+IQAKM E YP Q+SSTALMC    +QA+V+A CME +WS
Sbjct: 187 NHVLGSLLDVASCFSYAIWLIIQAKMGERYPYQYSSTALMCAAATVQAIVYATCMEGNWS 246

Query: 142 QWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILD 201
            WKLGWNIRLLTVAY+G +ASG MVTLI+WC+R RGPLF SIFNPLMLV VAIL SLILD
Sbjct: 247 TWKLGWNIRLLTVAYTGFLASGFMVTLITWCIRKRGPLFVSIFNPLMLVFVAILGSLILD 306

Query: 202 EKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIV---ITSPVD 258
           EKLHLGSI+G  LIV GLYA+LW KG EMK + +L  +K    SSK  EI+     S  D
Sbjct: 307 EKLHLGSIIGGVLIVIGLYAMLWAKGVEMKSMARLSHSK----SSKEAEIINVGTASAED 362

Query: 259 GDITTTKKEEK 269
            D++      +
Sbjct: 363 DDVSAAATNPR 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088618|emb|CBI37609.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (809), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 166/302 (54%), Positives = 198/302 (65%), Gaps = 46/302 (15%)

Query: 1   KSRPKLNLKILFQAFLCGLFG--------------------------------------- 21
           KS P+L   I  Q FLCGLFG                                       
Sbjct: 51  KSGPRLTWMIALQGFLCGLFGGALGQNLYLESLALTSPTFSAAMANLIPAVTFIFALFLG 110

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLI-HSNGHVASLHADP 80
           LE+L IRT AG+AKV+G+++GIGGAM+LTFY+G +INIWST +NL+ H + HVA+ H + 
Sbjct: 111 LERLKIRTWAGRAKVIGTVLGIGGAMVLTFYKGPQINIWSTKVNLLKHKDQHVAASHGEL 170

Query: 81  GKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDW 140
               LG++ A+ SCF YAIWL+IQAKM E YP  +S TALMC    +QA+V+A+C EK+W
Sbjct: 171 DNHVLGSILAVASCFSYAIWLIIQAKMGERYPFDYSCTALMCASATVQAIVYAMCKEKNW 230

Query: 141 SQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLIL 200
           S WKLGWNIRLLTVAY+G  ASG MV L+SWCVR RGPLF SIFNPLMLV VAIL SLIL
Sbjct: 231 SAWKLGWNIRLLTVAYTGFFASGFMVVLVSWCVRKRGPLFVSIFNPLMLVFVAILGSLIL 290

Query: 201 DEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEI--VITSPVD 258
           DEKLHLGSI+G  LIV GLYA+LW KG EMK +  L  +K    SSK  EI  V T+P  
Sbjct: 291 DEKLHLGSIIGGVLIVIGLYAMLWAKGAEMKSMATLSHSK----SSKEAEIINVGTAPAK 346

Query: 259 GD 260
            D
Sbjct: 347 DD 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431611|ref|XP_002277059.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  316 bits (809), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 166/302 (54%), Positives = 198/302 (65%), Gaps = 46/302 (15%)

Query: 1   KSRPKLNLKILFQAFLCGLFG--------------------------------------- 21
           KS P+L   I  Q FLCGLFG                                       
Sbjct: 68  KSGPRLTWMIALQGFLCGLFGGALGQNLYLESLALTSPTFSAAMANLIPAVTFIFALFLG 127

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLI-HSNGHVASLHADP 80
           LE+L IRT AG+AKV+G+++GIGGAM+LTFY+G +INIWST +NL+ H + HVA+ H + 
Sbjct: 128 LERLKIRTWAGRAKVIGTVLGIGGAMVLTFYKGPQINIWSTKVNLLKHKDQHVAASHGEL 187

Query: 81  GKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDW 140
               LG++ A+ SCF YAIWL+IQAKM E YP  +S TALMC    +QA+V+A+C EK+W
Sbjct: 188 DNHVLGSILAVASCFSYAIWLIIQAKMGERYPFDYSCTALMCASATVQAIVYAMCKEKNW 247

Query: 141 SQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLIL 200
           S WKLGWNIRLLTVAY+G  ASG MV L+SWCVR RGPLF SIFNPLMLV VAIL SLIL
Sbjct: 248 SAWKLGWNIRLLTVAYTGFFASGFMVVLVSWCVRKRGPLFVSIFNPLMLVFVAILGSLIL 307

Query: 201 DEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEI--VITSPVD 258
           DEKLHLGSI+G  LIV GLYA+LW KG EMK +  L  +K    SSK  EI  V T+P  
Sbjct: 308 DEKLHLGSIIGGVLIVIGLYAMLWAKGAEMKSMATLSHSK----SSKEAEIINVGTAPAK 363

Query: 259 GD 260
            D
Sbjct: 364 DD 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511209|ref|XP_004163894.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/305 (52%), Positives = 209/305 (68%), Gaps = 50/305 (16%)

Query: 3   RPKLNLKILFQAFLCGLFG---------------------------------------LE 23
           RPKL   ++F AFLCGLFG                                       LE
Sbjct: 66  RPKLTWSVIFYAFLCGLFGGSLSQNLYVESLALTSAIYASAIGNLAPAITFILAVSFRLE 125

Query: 24  KLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKR 83
           ++ I T  GKAKV+G+LIGI GAMILTFY+GVE++ WST ++L+H  GH ++ H  P + 
Sbjct: 126 RMNIGTMRGKAKVMGTLIGIVGAMILTFYKGVELHPWSTRVDLLH-KGHNSTEHVAPTEH 184

Query: 84  -----FLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEK 138
                 LG++  +GSCF YA+WL++QAKMSE YPC +SSTALMC+MG++QAV FALC+E 
Sbjct: 185 TIHSHVLGSVMGVGSCFSYALWLIVQAKMSECYPCHYSSTALMCMMGSVQAVGFALCVET 244

Query: 139 DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL 198
            WS+WKLGWNIRLL+VAY+GIVASG+MVTLI+WCVR RGP+F S+F+PL+LV+VAI +SL
Sbjct: 245 QWSRWKLGWNIRLLSVAYTGIVASGVMVTLITWCVRIRGPMFVSVFSPLILVLVAIAASL 304

Query: 199 ILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGES-----SKSIEIVI 253
            L EKL+LG ++G  L+VCGLY VLWGK KE++KITQL P +   E       + I++VI
Sbjct: 305 FLQEKLYLGCVVGGMLMVCGLYMVLWGKSKEIRKITQLAPMESIEEQLQQLGGEGIDLVI 364

Query: 254 TSPVD 258
           +SP+ 
Sbjct: 365 SSPIT 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442495|ref|XP_004139017.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/305 (52%), Positives = 209/305 (68%), Gaps = 50/305 (16%)

Query: 3   RPKLNLKILFQAFLCGLFG---------------------------------------LE 23
           RPKL   ++F AFLCGLFG                                       LE
Sbjct: 66  RPKLTWSVIFYAFLCGLFGGSLSQNLYVESLALTSATYASAIGNLAPAITFILAVSFRLE 125

Query: 24  KLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKR 83
           ++ I T  GKAKV+G+LIGI GAMILTFY+GVE++ WST ++L+H  GH ++ H  P + 
Sbjct: 126 RMNIGTMRGKAKVMGTLIGIVGAMILTFYKGVELHPWSTRVDLLH-KGHNSTEHVAPTEH 184

Query: 84  -----FLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEK 138
                 LG++  +GSCF YA+WL++QAKMSE YPC +SSTALMC+MG++QAV FALC+E 
Sbjct: 185 TIHSHVLGSVMGVGSCFSYALWLIVQAKMSECYPCHYSSTALMCMMGSVQAVGFALCVET 244

Query: 139 DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL 198
            WS+WKLGWNIRLL+VAY+GIVASG+MVTLI+WCVR RGP+F S+F+PL+LV+VAI +SL
Sbjct: 245 QWSRWKLGWNIRLLSVAYTGIVASGVMVTLITWCVRIRGPMFVSVFSPLILVLVAIAASL 304

Query: 199 ILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGES-----SKSIEIVI 253
            L EKL+LG ++G  L+VCGLY VLWGK KE++KITQL P +   E       + I++VI
Sbjct: 305 FLQEKLYLGCVVGGMLMVCGLYMVLWGKSKEIRKITQLAPMESIEEQLQQLGGEGIDLVI 364

Query: 254 TSPVD 258
           +SP+ 
Sbjct: 365 SSPIT 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510721|ref|XP_003524084.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/299 (51%), Positives = 201/299 (67%), Gaps = 39/299 (13%)

Query: 1   KSRPKLNLKILFQAFLCGLFG--------------------------------------- 21
           KSRPKL  ++LF +F  GLFG                                       
Sbjct: 66  KSRPKLTWRVLFMSFFSGLFGASLFHNLFLEALDLVSATFATAVYNLVPAVTFILAILCG 125

Query: 22  LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPG 81
           +EKL +RT AGKAKV+G++IGIGG+M+LTF++G EIN+ S   NL+  N  V +LH D G
Sbjct: 126 MEKLNVRTAAGKAKVMGTIIGIGGSMLLTFFKGQEINVKSFGTNLLQKNEQVVALHTDSG 185

Query: 82  KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWS 141
           K+FLG L   GSCF +A+WL+IQ+KMS+EYP   SSTALM +M AIQA  FAL +EKDWS
Sbjct: 186 KKFLGVLCGFGSCFSFALWLIIQSKMSKEYPSHHSSTALMSLMAAIQATAFALYVEKDWS 245

Query: 142 QWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILD 201
           QWKLG +IR+LTVAY+ IVASGL+V +I+WCVR RGP+F S+FNPLMLV+VA+  SL+  
Sbjct: 246 QWKLGSSIRILTVAYTAIVASGLVVIVIAWCVRMRGPMFVSVFNPLMLVLVAVADSLMFG 305

Query: 202 EKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPVDGD 260
           E L++GS++GA LIV GLY VLWGK KEMKK    V ++IN E   +  +V+++ ++ D
Sbjct: 306 ENLYVGSVMGAMLIVGGLYMVLWGKSKEMKKANLSVSSEINQEHEATEVVVMSTTINDD 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2032960	355	UMAMIT24 "Usually multiple aci	0.876	0.678	0.380	2.9e-50
TAIR|locus:2199327	356	UMAMIT23 "Usually multiple aci	0.847	0.654	0.394	2e-47
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.847	0.622	0.352	2e-43
TAIR|locus:2125172	365	UMAMIT31 "Usually multiple aci	0.810	0.610	0.356	6.6e-41
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.752	0.549	0.367	4.6e-40
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.854	0.584	0.352	1.7e-38
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.850	0.570	0.329	2.8e-38
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.749	0.536	0.363	3.5e-38
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.756	0.543	0.375	3.5e-38
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.843	0.596	0.340	1.5e-37

TAIR|locus:2032960 UMAMIT24 "Usually multiple acids move in and out Transporters 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
 Identities = 92/242 (38%), Positives = 151/242 (62%)

Query:    19 LFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHA 78
             +F +E L + +  G+AK++G+L+G  GA++  FY+G+EI+IWST+++L+  + H      
Sbjct:   113 VFRMETLRLGSNEGRAKLVGTLLGACGALVFVFYKGIEIHIWSTHVDLLKGS-HTGRATT 171

Query:    79 DPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEK 138
             +     LG L  LGS    ++WL++QAK+ +E    + +T+LM  +G++  V+ ALC + 
Sbjct:   172 NHHVSILGVLMVLGSNVSTSLWLLLQAKIGKELGGLYWNTSLMNGVGSLVCVIIALCSDH 231

Query:   139 DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXXXXXXXXXXX 198
             DW QW+LGW+I LL   YSGIV SG++V L++WC+ T+GPLF ++F+P            
Sbjct:   232 DWEQWQLGWDINLLATLYSGIVVSGMVVPLVAWCIATKGPLFVTVFSPIRLVIVALIGSF 291

Query:   199 XXDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEIVITSPVD 258
               +E LHLGSI+GA ++V G+Y V+W K KE K  +         +++K +++   S V+
Sbjct:   292 ALEEPLHLGSIIGAMIMVGGVYLVVWCKMKEKKSASTTSDHIETNKNNKELDLGNLSSVN 351

Query:   259 GD 260
              D
Sbjct:   352 RD 353

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2199327 UMAMIT23 "Usually multiple acids move in and out Transporters 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 92/233 (39%), Positives = 140/233 (60%)

Query:    19 LFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHA 78
             L  +E + + +  G AKV G+L G+GGA++  FYRG+EI +WST++NL++     +    
Sbjct:   113 LLRMESVRLGSSVGLAKVFGTLFGVGGALVFIFYRGIEIRLWSTHVNLVNQPRDSSRDAT 172

Query:    79 DPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEK 138
                   LGAL   G     ++W ++Q K+S+++   + +  LM +MG + A++ ALC E 
Sbjct:   173 THHISILGALLVFGGNISISLWFLLQVKISKQFGGPYWNATLMNMMGGVVAMLVALCWEH 232

Query:   139 DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXXXXXXXXXXX 198
             D  +W+LGWNIRLLT+AY+ I+ SG++V + +WC+ +RGPLF S+F+P            
Sbjct:   233 DLDEWRLGWNIRLLTIAYAAILISGMVVAVNAWCIESRGPLFVSVFSPVGLVIVALVGSF 292

Query:   199 XXDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIEI 251
               DE LHLGSI+G  +IV  LY VLW K KEMK +          ++SK I +
Sbjct:   293 LLDETLHLGSIIGTVIIVGALYIVLWAKNKEMKSMLTTSDHNETNKTSKDITV 345

GO:0016020 "membrane" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 86/244 (35%), Positives = 139/244 (56%)

Query:    16 LCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVAS 75
             L  +F  E +GI+  +G+AKV+G+L+ + GAM+L+FY G  I I  + I+  ++  ++  
Sbjct:   115 LAAIFRQETVGIKKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWAYAE-NITK 173

Query:    76 LHADPGKR--FLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFA 133
               +  G    FLG    + +   +A W +IQ KMSE +   ++ST LMC+MG+IQ    A
Sbjct:   174 HGSSSGHSNFFLGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIA 233

Query:   134 LCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXXXXXX 193
             L  +   S W L   +R ++  Y+G+VAS L   L+SW ++ +GPL+ S+F+P       
Sbjct:   234 LISDHTISDWSLSSPLRFISALYAGVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVA 293

Query:   194 XXXXXXXDEKLHLGSILGATLIVCGLYAVLWGKGKEM-------KKITQLVPAKINGESS 246
                    +EKL+ G+ +G+ L+V GLY VLWGK +E+       +K+ Q    K+  ES+
Sbjct:   294 IFSWALLEEKLYTGTFMGSALVVIGLYGVLWGKDREVSEKEEEREKVKQQ-NHKVKSESN 352

Query:   247 KSIE 250
             + IE
Sbjct:   353 EDIE 356

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2125172 UMAMIT31 "Usually multiple acids move in and out Transporters 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
 Identities = 83/233 (35%), Positives = 137/233 (58%)

Query:    19 LFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHA 78
             +F +EKL ++++AG   V+G+LI IGGA++LT Y+GV +    T +  + ++  + + HA
Sbjct:   120 IFRVEKLNMKSKAGMGMVMGALICIGGALLLTMYKGVPL----TKLRKLETHQLINNNHA 175

Query:    79 -DPGKRFLGA--LFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALC 135
               P    +G   LFA  SCFG   W++IQAK++E+YPCQ+SST ++   G IQ  + +L 
Sbjct:   176 MKPENWIIGCVLLFAGSSCFGS--WMLIQAKVNEKYPCQYSSTVVLSFFGTIQCALLSLI 233

Query:   136 MEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXXXXXXXX 195
               +D + W L   + ++T+ Y+G VA G+     SWC+R RGP+F SIF P         
Sbjct:   234 KSRDITAWILTDKLDIVTIVYAGAVAQGICTVGTSWCIRKRGPIFTSIFTPVGLIFATLF 293

Query:   196 XXXXXDEKLHLGSILGATLIVCGLYAVLWGKGKEMKK-ITQLVPAKINGESSK 247
                    ++ LGS++G+ +++ GLY  L GK + MK+   + +P + N +  +
Sbjct:   294 DFLILHRQIFLGSVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQE 346

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 79/215 (36%), Positives = 130/215 (60%)

Query:    19 LFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINI-WSTNINLIHSNGHVASL- 76
             +F LEK+ I  R  +AK++G+++ IGGAM++TF +G  I + W++N   ++ + H   + 
Sbjct:   118 VFKLEKVTIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLNGHTHAMRIP 177

Query:    77 -HADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALC 135
               AD  +   G++  + SCF ++ ++++QAK+  +Y  + S TALMC+MG ++A V  L 
Sbjct:   178 KQADIAR---GSIMLVASCFSWSCYIILQAKILAQYKAELSLTALMCIMGMLEATVMGLI 234

Query:   136 ME-KDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXXXXXXX 194
              E K+ S WK+  ++ LL   Y G+V SGL   +I W  + RGP+F S FNP        
Sbjct:   235 WERKNMSVWKINPDVTLLASIYGGLV-SGLAYYVIGWASKERGPVFVSAFNPLSMVLVAI 293

Query:   195 XXXXXXDEKLHLGSILGATLIVCGLYAVLWGKGKE 229
                    EK+++G ++G+ +IV G+Y VLWGK K+
Sbjct:   294 LSTFVFLEKVYVGRVIGSVVIVIGIYLVLWGKSKD 328

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 85/241 (35%), Positives = 136/241 (56%)

Query:    16 LCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHV-- 73
             L  LF +E L ++    +AK+ G+++ + GAM++T Y+G  + ++ T    I  + H   
Sbjct:   125 LAVLFRMEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANT 184

Query:    74 -ASLHADPGKRFL-GALFALGSCFGYAIWLVIQAKMSEEYPC-QFSSTALMCVMGAIQAV 130
              +S ++   K FL G++  + +   +A   V+QAK+ + Y   Q S T L+C +G +QAV
Sbjct:   185 TSSKNSSSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAV 244

Query:   131 VFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXXX 190
                  ME + S W++GW++ LL  AYSGIVAS +   +    ++ RGP+FA+ F+P    
Sbjct:   245 AVTFVMEHNPSAWRIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMV 304

Query:   191 XXXXXXXXXXDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSIE 250
                        EK+ LG ++GA LIV GLYAVLWGK KE  ++T    AKI+  S  + +
Sbjct:   305 IVAVMGSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQKE-NQVTICELAKIDSNSKVTED 363

Query:   251 I 251
             +
Sbjct:   364 V 364

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 375 (137.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
 Identities = 80/243 (32%), Positives = 126/243 (51%)

Query:    22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEI-NIWSTNINLIHSNGHVAS---LH 77
             LEK+ I  R G AK++G++  + GA I+T Y+G  I +IW  N+ +  S         L 
Sbjct:   132 LEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLS 191

Query:    78 ADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCME 137
             A      LG ++ LG+C  ++ W+V+QA + + YP + S T+  C  G IQ ++ A   E
Sbjct:   192 AKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFE 251

Query:   138 KDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXXXXXXXXXX 197
              D   WK+     L T+ Y+G VASG+  ++  WC+   GP+F +++ P           
Sbjct:   252 TDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMAS 311

Query:   198 XXXDEKLHLGSILGATLIVCGLYAVLWGKGKE-----MKKITQLVPAKINGESSKSIEIV 252
                 E+ +LG I GA LI+ GLY VLWGK +E     ++  + +VP        +S  ++
Sbjct:   312 IILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRLGLLQAKSSMVPENQPDNMDQSATLI 371

Query:   253 ITS 255
             I S
Sbjct:   372 INS 374

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 76/209 (36%), Positives = 121/209 (57%)

Query:    22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINI-WSTNINLIHSNGHVASLHADP 80
             +EK+ I     KAK++G+L+G+GGA+++T Y+G  I + WS N N+   NGH  +   D 
Sbjct:   126 MEKVNIAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWS-NPNMDQQNGHTNNSQ-DH 183

Query:    81 GKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDW 140
                 +G L  L  C  ++ + V+Q+   + YP   S +AL+C+ GA+Q+   AL +E+  
Sbjct:   184 NNWVVGTLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHP 243

Query:   141 SQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXXXXXXXXXXXXX 200
             S W +GW+ RL    Y+GIV+SG+   +    ++TRGP+F + FNP              
Sbjct:   244 SGWAVGWDARLFAPLYTGIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFIL 303

Query:   201 DEKLHLGSILGATLIVCGLYAVLWGKGKE 229
              E++H G ++G  +I  GLY V+WGKGK+
Sbjct:   304 HEQIHFGCVIGGAVIAAGLYMVVWGKGKD 332

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 81/216 (37%), Positives = 123/216 (56%)

Query:    17 CGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASL 76
             C L  LE + +  + G AKVLG+L+ IGGA ++T YRG  I  +   +N+      V S 
Sbjct:   144 CAL-RLEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPI--FDQGLNM-QKEEVVGSD 199

Query:    77 HADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCM 136
             ++      LG L+ +G C  +A W+V+QA + ++YP + + T+  C  G IQ +V AL +
Sbjct:   200 NSH--SLTLGWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFV 257

Query:   137 EKDWSQWKL-GWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXXXXXXXX 195
             E D + W +  W   L T+ Y+GI+ASGL+V L +WC+   GP+F ++F P         
Sbjct:   258 ETDLNNWIIVSWE-ELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAM 316

Query:   196 XXXXXDEKLHLGSILGATLIVCGLYAVLWGKGKEMK 231
                   ++L+ G I+GA  I+ GLY VLWGK +E K
Sbjct:   317 AFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERK 352

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 82/241 (34%), Positives = 130/241 (53%)

Query:    16 LCGLFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNIN--LIHSNGHV 73
             +  L  +EK+ I  R G +K+LG+ + + GA ++T Y+G  I   +++++  L+ +N  V
Sbjct:   127 MAALLRIEKVRINRRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAV 186

Query:    74 -ASL-HADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVV 131
              A L +A P    LG ++ +G C  ++ WLV QA + + YP + S T+  C  G IQ ++
Sbjct:   187 LAPLGNAAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLI 246

Query:   132 FALCMEKDWSQWKL--GWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPXXX 189
              A   E+D   W    GW   L T+ Y+GIVASG+   +  WC+   GP+F +++ P   
Sbjct:   247 IAAFCERDSQAWVFHSGWE--LFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQT 304

Query:   190 XXXXXXXXXXXDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKITQLVPAKINGESSKSI 249
                         E+ +LG I+GA LI+ GLY VL+GK +E +K   L  A I   +   I
Sbjct:   305 LVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEE-RKFAALEKAAIQSSAEHGI 363

Query:   250 E 250
             E
Sbjct:   364 E 364

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034906001 SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (965 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-28
pfam00892	126	pfam00892, EamA, EamA-like transporter family	7e-09
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	1e-06
TIGR00950	260	TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran	6e-06
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	6e-04

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  110 bits (276), Expect = 3e-28
 Identities = 68/216 (31%), Positives = 125/216 (57%), Gaps = 7/216 (3%)

Query: 19  LFGLEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTN--INLIHSNGHVASL 76
           +F +EK+  + R+  AKV+G+++ + GA+++ FY G  + + S+   +N    +  ++S 
Sbjct: 124 IFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSS 183

Query: 77  HADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCM 136
           ++D      GAL  +   F  ++  ++QA +  EYP  F+ + L  V  +I   +  L +
Sbjct: 184 NSD--WLIGGALLTIQGIF-VSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVV 240

Query: 137 EKD-WSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAIL 195
           EK+  S W + ++I L+T+    I+ S   V + SW VR +GPL+ +IF PL +++  ++
Sbjct: 241 EKNNPSVWIIHFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVM 299

Query: 196 SSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMK 231
            ++ L++ L+LG ++G  LI  G YAV+WGK  E K
Sbjct: 300 GAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK 335

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 52.6 bits (127), Expect = 7e-09
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 95  FGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTV 154
             +A++ V   K+ E      + TA   ++  I  ++    + K ++   L     +L +
Sbjct: 1   LSWALYFVFSKKLLERIS-PLTFTAYRFLIAGILLILLLFLLRKPFALLSLKA---ILAL 56

Query: 155 AYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATL 214
            Y G+  + L   L  + ++      AS+   L  V   ILS L+L EKL L  +LG  L
Sbjct: 57  LYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVL 116

Query: 215 IVCGLYAVLW 224
           I+ G+  +L 
Sbjct: 117 ILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 6/145 (4%)

Query: 85  LGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWK 144
           LG L AL +   +A++  +  ++S   P   +   L+ ++ A+  ++             
Sbjct: 154 LGLLLALAAALLWALYTALVKRLSRLGP--VTLALLLQLLLALLLLLLFFLSGFGAPILS 211

Query: 145 LGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKL 204
             W    L + Y G+ ++GL   L  + +R  G    ++ + L  V  A+L  L+L E L
Sbjct: 212 RAW----LLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPL 267

Query: 205 HLGSILGATLIVCGLYAVLWGKGKE 229
               +LGA L+V G+        + 
Sbjct: 268 SPAQLLGAALVVLGVLLASLRARRR 292

Length = 292

>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 9/137 (6%)

Query: 86  GALFALGSCFGYAIWLVIQAKMSEEYPC---QFSSTALMCVMGAIQAVVFALCMEKDWSQ 142
           G L  LGS   +A+  V+  ++ ++      QF+   L+   GA+  + FA  +  +   
Sbjct: 129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLL--GALLLLPFAWFLGPNPQA 186

Query: 143 WKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDE 202
             L W      + Y G++ + L   L +  +    P  ASI      +V  +L  LIL E
Sbjct: 187 LSLQW----GALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGE 242

Query: 203 KLHLGSILGATLIVCGL 219
            L L  ++G  LI+  +
Sbjct: 243 TLSLPQLIGGALIIAAV 259

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 260

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 86  GALFALGSCFGYAI-WLVIQAKMSEEYPCQFSSTALMCVMGAIQA---VVFALCMEK--- 138
           G + AL +   +A+  ++ Q  + ++   + +   L+  +  +     +   L  E    
Sbjct: 1   GFILALAASALFALRLILSQKLLKKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKL 60

Query: 139 ----DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAI 194
                     L  +  +L +  SG++A    ++      RT  PL +S+   +  VVV +
Sbjct: 61  GKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRT-SPLTSSVAGTVKRVVVIV 119

Query: 195 LSSLILDEKLHLGSILGATLIVCGLYA 221
           LS +I  + +   +ILG  + + G+  
Sbjct: 120 LSVIIFGDPVTFLNILGLAIAILGVVL 146

This family includes transporters with a specificity for triose phosphate. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
PLN00411	358	nodulin MtN21 family protein; Provisional	99.95
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.89
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.89
PRK11272	292	putative DMT superfamily transporter inner membran	99.88
PRK11689	295	aromatic amino acid exporter; Provisional	99.88
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.87
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.86
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.85
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.84
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.82
PRK15430	296	putative chloramphenical resistance permease RarD;	99.79
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.71
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.7
COG2510	140	Predicted membrane protein [Function unknown]	99.68
COG2962	293	RarD Predicted permeases [General function predict	99.64
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.63
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.63
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.6
KOG2765	416	consensus Predicted membrane protein [Function unk	99.58
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.57
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.51
PRK15430	296	putative chloramphenical resistance permease RarD;	99.44
KOG1580	337	consensus UDP-galactose transporter related protei	99.41
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.38
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.32
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.3
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.28
KOG2766	336	consensus Predicted membrane protein [Function unk	99.27
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.24
PLN00411	358	nodulin MtN21 family protein; Provisional	99.2
KOG1581	327	consensus UDP-galactose transporter related protei	99.14
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.14
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.14
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.14
PRK11272	292	putative DMT superfamily transporter inner membran	99.12
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.09
PRK11689	295	aromatic amino acid exporter; Provisional	99.08
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.08
COG2962	293	RarD Predicted permeases [General function predict	99.03
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.01
KOG1582	367	consensus UDP-galactose transporter related protei	98.97
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.92
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.91
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.85
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.84
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.83
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.76
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.71
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.68
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.65
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.58
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.52
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.44
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.36
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.33
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.32
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.26
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.23
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.2
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.14
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.09
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.04
PRK10650	109	multidrug efflux system protein MdtI; Provisional	98.03
PRK11431	105	multidrug efflux system protein; Provisional	98.01
COG2076	106	EmrE Membrane transporters of cations and cationic	97.99
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.88
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.84
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.76
PRK13499	345	rhamnose-proton symporter; Provisional	97.76
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.75
PRK13499	345	rhamnose-proton symporter; Provisional	97.41
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.4
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.29
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.13
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	97.12
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.91
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.62
COG2510	140	Predicted membrane protein [Function unknown]	96.35
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.13
KOG1580	337	consensus UDP-galactose transporter related protei	96.09
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.03
PF13536	113	EmrE: Multidrug resistance efflux transporter	95.73
KOG2765	416	consensus Predicted membrane protein [Function unk	95.68
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.66
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.4
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	95.3
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.15
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	94.98
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	94.97
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	94.82
KOG1443	349	consensus Predicted integral membrane protein [Fun	94.61
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	93.45
PRK02237	109	hypothetical protein; Provisional	93.09
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	93.07
PRK09541	110	emrE multidrug efflux protein; Reviewed	92.08
KOG3912	372	consensus Predicted integral membrane protein [Gen	91.82
PRK10650	109	multidrug efflux system protein MdtI; Provisional	91.5
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	91.19
COG2076	106	EmrE Membrane transporters of cations and cationic	90.71
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	90.18
PRK11431	105	multidrug efflux system protein; Provisional	90.04
KOG2766	336	consensus Predicted membrane protein [Function unk	88.45
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	88.15
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	87.24
KOG1581	327	consensus UDP-galactose transporter related protei	87.06
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	85.85
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	85.81
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	85.4
COG1742	109	Uncharacterized conserved protein [Function unknow	84.31
KOG4831	125	consensus Unnamed protein [Function unknown]	83.81
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	82.81

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.95  E-value=8.7e-26  Score=200.27  Aligned_cols=226  Identities=29%  Similarity=0.580  Sum_probs=164.4

Q ss_pred             CCccHHHHHHHHHHHHHh--------------------------------HHHhc------cccccCcceeehhhhhhhh
Q 046895            4 PKLNLKILFQAFLCGLFG--------------------------------LEKLG------IRTRAGKAKVLGSLIGIGG   45 (275)
Q Consensus         4 ~~~~~~~~~~~~~~g~~g--------------------------------l~~~~------~~e~~s~~~~~~~~l~~~G   45 (275)
                      |+.+++++..++++|+++                                +++++      +|||+++++++|++++++|
T Consensus        71 ~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~G  150 (358)
T PLN00411         71 PPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIG  150 (358)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHH
Confidence            445688888888888766                                77777      6999999999999999999


Q ss_pred             hhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHH
Q 046895           46 AMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMG  125 (275)
Q Consensus        46 v~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~  125 (275)
                      +.++..+++........+. +.+.............+...|++++++++++||+|+++.|+..+++++....+++++.++
T Consensus       151 v~ll~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~  229 (358)
T PLN00411        151 ALVVIFYHGPRVFVASSPP-YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCV  229 (358)
T ss_pred             HHHHHHccCcccccccccc-cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHH
Confidence            9998754332110000000 000000000011122345779999999999999999999999888877556677888777


Q ss_pred             HHHHHHHHHHhcc-CccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCcc
Q 046895          126 AIQAVVFALCMEK-DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKL  204 (275)
Q Consensus       126 ~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~  204 (275)
                      .+...+..+..+. +...|........+.+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++
T Consensus       230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~l  308 (358)
T PLN00411        230 SIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSL  308 (358)
T ss_pred             HHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCC
Confidence            7777666665443 2222322122234446677764 6789999999999999999999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHhhhccccccc
Q 046895          205 HLGSILGATLIVCGLYAVLWGKGKEMK  231 (275)
Q Consensus       205 s~~~~iG~~li~~G~~l~~~~~~~~~~  231 (275)
                      ++.+++|+++|+.|+++..+.++++.+
T Consensus       309 t~~~~iG~~LIl~Gv~l~~~~~~~~~~  335 (358)
T PLN00411        309 YLGCLIGGILITLGFYAVMWGKANEEK  335 (358)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            999999999999999999876555433

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.89  E-value=3.7e-22  Score=174.44  Aligned_cols=199  Identities=15%  Similarity=0.095  Sum_probs=154.8

Q ss_pred             CCCCccHHHHHHHHHHHHHh--------------------------------HHHhccccccCcceeehhhhhhhhhhhh
Q 046895            2 SRPKLNLKILFQAFLCGLFG--------------------------------LEKLGIRTRAGKAKVLGSLIGIGGAMIL   49 (275)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~g--------------------------------l~~~~~~e~~s~~~~~~~~l~~~Gv~li   49 (275)
                      ++++.+++++.+++..|+++                                ++++++|||++++++.+++++++|+++.
T Consensus        56 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        56 KRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            45667888999988888888                                9999999999999999999999999875


Q ss_pred             hhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhh--hCCccchHHHHHHHHHHH
Q 046895           50 TFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSE--EYPCQFSSTALMCVMGAI  127 (275)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i  127 (275)
                      ..                          .+.+....|++++++|+++|++|.++.|+..+  +.++ ...+.+++.++++
T Consensus       136 ~~--------------------------~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~  188 (302)
T TIGR00817       136 SD--------------------------TELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDK-TNLYAYISIMSLF  188 (302)
T ss_pred             cC--------------------------CcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-ccHHHHHHHHHHH
Confidence            31                          11123457999999999999999999999887  6777 8999999999999


Q ss_pred             HHHHHHHHhccCccc---cch-----hhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHH
Q 046895          128 QAVVFALCMEKDWSQ---WKL-----GWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLI  199 (275)
Q Consensus       128 ~~~~~~~~~~~~~~~---~~~-----~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li  199 (275)
                      .+.|+....+.....   +..     .....+...+..++......+.++++++++.++++++++.+++|++++++++++
T Consensus       189 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~  268 (302)
T TIGR00817       189 LLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF  268 (302)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence            999888765431110   000     000111112222222233333466689999999999999999999999999999


Q ss_pred             hcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          200 LDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       200 ~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      +||++++.+++|+++++.|++++.+.|+
T Consensus       269 lge~lt~~~~~G~~lil~Gv~l~~~~k~  296 (302)
T TIGR00817       269 FGTKISPQQVFGTGIAIAGVFLYSRVKA  296 (302)
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999986543

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.89  E-value=1.6e-21  Score=170.24  Aligned_cols=183  Identities=20%  Similarity=0.222  Sum_probs=140.5

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++++|||++++++++++++++|++++...+ .                      +.......|++++++++++|+.|.
T Consensus       103 l~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~-~----------------------~~~~~~~~G~~l~l~aal~~a~~~  159 (299)
T PRK11453        103 LGAFTFGERLQGKQLAGIALAIFGVLVLIEDS-L----------------------NGQHVAMLGFMLTLAAAFSWACGN  159 (299)
T ss_pred             HHHHHhcCcCcHHHHHHHHHHHHhHHHhcccc-C----------------------CCcchhHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999886210 0                      111233579999999999999999


Q ss_pred             HHHHhhhhhCCcc--chHHHHHHHHHHHHHHHHHHHhccCc---cccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895          102 VIQAKMSEEYPCQ--FSSTALMCVMGAIQAVVFALCMEKDW---SQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTR  176 (275)
Q Consensus       102 v~~k~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~  176 (275)
                      ++.|+..++.+..  .....+.+.++.+.........+.+.   ..+...+...|+.++++++++++++|.+|++++++.
T Consensus       160 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~  239 (299)
T PRK11453        160 IFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRY  239 (299)
T ss_pred             HHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999986654431  22334444444433333333333211   111122234577799999999999999999999999


Q ss_pred             CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      ++.+++.+.+++|+++.+++++++||++++.+++|++++++|+++..+.++
T Consensus       240 ~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        240 ETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            999999999999999999999999999999999999999999998876543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.88  E-value=2.2e-21  Score=168.71  Aligned_cols=175  Identities=19%  Similarity=0.226  Sum_probs=142.8

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++.+ +|||+++++++|++++++|++++...+                         ..+....|++++++++++||.|.
T Consensus       113 la~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~-------------------------~~~~~~~G~l~~l~a~~~~a~~~  166 (292)
T PRK11272        113 FSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGG-------------------------NLSGNPWGAILILIASASWAFGS  166 (292)
T ss_pred             HHHH-hcccCchhHHHHHHHHHHhHHHHhcCc-------------------------ccccchHHHHHHHHHHHHHHHHH
Confidence            6664 699999999999999999999875210                         01133579999999999999999


Q ss_pred             HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895          102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA  181 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~  181 (275)
                      +..|+..+. ++ ...+.+++.++++...++....+.....  ..+...|..+++++++++.++|.+|++++++.+++++
T Consensus       167 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~  242 (292)
T PRK11272        167 VWSSRLPLP-VG-MMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALA  242 (292)
T ss_pred             HHHHhcCCC-cc-hHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence            999997543 33 5567788888888777766654332111  1223457778999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      +++.+++|++++++++++++|++++.+++|+++++.|+++..+.+
T Consensus       243 s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~  287 (292)
T PRK11272        243 TSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK  287 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999986643

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.88  E-value=1.7e-21  Score=169.62  Aligned_cols=182  Identities=12%  Similarity=0.080  Sum_probs=134.3

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++++|||+++++++|++++++|++++...+.. . .+            . ....+......|++++++|+++||+|+
T Consensus       108 l~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~-~-~~------------~-~~~~~~~~~~~G~~~~l~aa~~~A~~~  172 (295)
T PRK11689        108 FAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNG-L-SL------------A-ELINNIASNPLSYGLAFIGAFIWAAYC  172 (295)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHhHhheecCCcc-c-hh------------h-hhhhccccChHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999998631100 0 00            0 000011123569999999999999999


Q ss_pred             HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895          102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA  181 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~  181 (275)
                      ++.|+..++.++ ...   .+..+.+.+.+...+.+..  .... +...|..+++.++ .++++|.+|++++++.+++++
T Consensus       173 v~~k~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~--~~~~-~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~  244 (295)
T PRK11689        173 NVTRKYARGKNG-ITL---FFILTALALWIKYFLSPQP--AMVF-SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLL  244 (295)
T ss_pred             HHHhhccCCCCc-hhH---HHHHHHHHHHHHHHHhcCc--cccC-CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHH
Confidence            999998766665 443   2233333333333332211  1111 1234666666674 789999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      +.+.+++|+++++++++++||++++.+++|+++++.|+++.....
T Consensus       245 s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        245 ATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            999999999999999999999999999999999999998886544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.87  E-value=6e-21  Score=163.11  Aligned_cols=169  Identities=24%  Similarity=0.336  Sum_probs=141.8

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++.+++|||++++++++++++++|++++...+                         +.+....|++++++++++|+.+.
T Consensus        90 ~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~-------------------------~~~~~~~G~~~~l~a~~~~a~~~  144 (260)
T TIGR00950        90 LSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG-------------------------NLSINPAGLLLGLGSGISFALGT  144 (260)
T ss_pred             HHHHHccCCCcHHHHHHHHHHHHhHHhhccCC-------------------------cccccHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999985211                         11244689999999999999999


Q ss_pred             HHHHhhhhhCCcc-chHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 046895          102 VIQAKMSEEYPCQ-FSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLF  180 (275)
Q Consensus       102 v~~k~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~  180 (275)
                      ++.|+..++.++. .....+++.++.+++.+.....++.. ..   +...|..+++.+++++.++|.+|++++++.++++
T Consensus       145 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  220 (260)
T TIGR00950       145 VLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSA  220 (260)
T ss_pred             HHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence            9999998776641 34455678888888887776654322 11   2345666888899899999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHH
Q 046895          181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGL  219 (275)
Q Consensus       181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~  219 (275)
                      ++.+.+++|++++++++++++|+++..+++|+++++.|+
T Consensus       221 ~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       221 ASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999986

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.86  E-value=1.4e-20  Score=164.05  Aligned_cols=190  Identities=18%  Similarity=0.186  Sum_probs=152.3

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++++|+|+++.+++|++++++|++++...|...                 +.++.+..+...|++++++++++||+++
T Consensus       122 LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~-----------------~~~~~~~~~~i~GDll~l~~a~lya~~n  184 (334)
T PF06027_consen  122 LSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS-----------------GSDSSSGSNPILGDLLALLGAILYAVSN  184 (334)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc-----------------cccCCCCCccchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987543211                 0111344578999999999999999999


Q ss_pred             HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccC-ccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 046895          102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKD-WSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLF  180 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~  180 (275)
                      ++.++..++.+. .....+..+++.++..+...+.+.. .....+.. ..+. +.....++..+.|.+....++..+|+.
T Consensus       185 V~~E~~v~~~~~-~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~-~~~~-~~v~~~~~lf~~y~l~p~~l~~ssAt~  261 (334)
T PF06027_consen  185 VLEEKLVKKAPR-VEFLGMLGLFGFIISGIQLAILERSGIESIHWTS-QVIG-LLVGYALCLFLFYSLVPIVLRMSSATF  261 (334)
T ss_pred             HHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHheehhhhhccCCCh-hhHH-HHHHHHHHHHHHHHHHHHHHHhCccce
Confidence            999999998887 8888999999999988888766543 22222222 1122 222233466677888889999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccccc
Q 046895          181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMK  231 (275)
Q Consensus       181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~~  231 (275)
                      .++-..+..+++++++++++|+++++..++|.++|++|.+++...+.+..+
T Consensus       262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            999999999999999999999999999999999999999999876554433

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.85  E-value=6.8e-20  Score=159.44  Aligned_cols=172  Identities=16%  Similarity=0.101  Sum_probs=131.1

Q ss_pred             HhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHH
Q 046895           24 KLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVI  103 (275)
Q Consensus        24 ~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~  103 (275)
                      .++-+|++++  ..++.++++|++++...+ .                      +.......|++++++++++|++|.+.
T Consensus       112 ~ll~~~~~~~--~~~~~i~~~Gv~li~~~~-~----------------------~~~~~~~~G~ll~l~aa~~~a~~~v~  166 (293)
T PRK10532        112 ALFSSRRPVD--FVWVVLAVLGLWFLLPLG-Q----------------------DVSHVDLTGAALALGAGACWAIYILS  166 (293)
T ss_pred             HHHhcCChHH--HHHHHHHHHHHheeeecC-C----------------------CcccCChHHHHHHHHHHHHHHHHHHH
Confidence            3334466654  456677899998875211 0                      01113457999999999999999999


Q ss_pred             HHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhh
Q 046895          104 QAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASI  183 (275)
Q Consensus       104 ~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~  183 (275)
                      .|+..++.++ ... .+..++++++..++....... ..+   +...|..++++|++++.++|.+|++++++.++++++.
T Consensus       167 ~r~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~  240 (293)
T PRK10532        167 GQRAGAEHGP-ATV-AIGSLIAALIFVPIGALQAGE-ALW---HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGT  240 (293)
T ss_pred             HHHHhccCCc-hHH-HHHHHHHHHHHHHHHHHccCc-ccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHH
Confidence            9999777666 554 455566666666665543321 111   1223445678999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          184 FNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       184 ~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      +.+++|+++.+++++++||++++.+++|++++++|++...+..
T Consensus       241 ~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        241 LMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999986554

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.84  E-value=7.8e-20  Score=158.17  Aligned_cols=172  Identities=19%  Similarity=0.225  Sum_probs=126.5

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++++|||+++++++|+.++++|++++...+.                         ......|..++++++++|+.|.
T Consensus       106 ~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~-------------------------~~~~~~g~~~~l~aal~~a~~~  160 (281)
T TIGR03340       106 WATLTLGETLSPLAWLGILIITLGLLVLGLSRF-------------------------AQHRRKAYAWALAAALGTAIYS  160 (281)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc-------------------------cccchhHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999998852110                         0122357889999999999999


Q ss_pred             HHHHhhhhhCCccchH---HHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 046895          102 VIQAKMSEEYPCQFSS---TALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGP  178 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~  178 (275)
                      ++.|+..++.++....   ..+.+...++...+.....+..  .+.. ....++.+++.+.+.+.++|.+|++++++.++
T Consensus       161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a  237 (281)
T TIGR03340       161 LSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMFP-YARQILPSATLGGLMIGGAYALVLWAMTRLPV  237 (281)
T ss_pred             hhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            9998875444431221   1222222211111111111111  1111 12234556777888999999999999999999


Q ss_pred             eehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Q 046895          179 LFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYA  221 (275)
Q Consensus       179 ~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l  221 (275)
                      ++++.+.+++|+++.+++++++||++++.+++|++++++|+++
T Consensus       238 ~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       238 ATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             eEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            9999999999999999999999999999999999999999976

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.82  E-value=3.4e-19  Score=158.54  Aligned_cols=177  Identities=17%  Similarity=0.186  Sum_probs=139.0

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++++|||++++++++++++++|+++....                          +.+..+.|++++++|+++|++++
T Consensus       157 ls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~--------------------------~~~~~~~G~~~~l~s~~~~a~~~  210 (350)
T PTZ00343        157 LSILFLKQFLNLYAYLSLIPIVGGVALASVK--------------------------ELHFTWLAFWCAMLSNLGSSLRS  210 (350)
T ss_pred             HHHHHhCCCccHHHHHHHHHHHHHHHheecc--------------------------cchhHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999998621                          11245689999999999999999


Q ss_pred             HHHHhhhhhCC------ccchHHHHHHHHHHHHHHHHHHHhccCc--cccc----hhhhhhHHHHHHHHHhhhHHHHHHH
Q 046895          102 VIQAKMSEEYP------CQFSSTALMCVMGAIQAVVFALCMEKDW--SQWK----LGWNIRLLTVAYSGIVASGLMVTLI  169 (275)
Q Consensus       102 v~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~  169 (275)
                      ++.|+..++.+      +......+..++++++++|+.++.+...  ..+.    ......+..+++ .++.+++.|++|
T Consensus       211 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~  289 (350)
T PTZ00343        211 IFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLY  289 (350)
T ss_pred             HHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHH
Confidence            99999877543      1144555667889999888877554311  1110    000111222333 345678889998


Q ss_pred             HH----HHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          170 SW----CVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       170 ~~----a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      +.    +++++++...++..+++|+++++++++++||++++.+++|+++++.|++++.+.
T Consensus       290 n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        290 NEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            84    999999999999999999999999999999999999999999999999998764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.79  E-value=5.7e-18  Score=147.61  Aligned_cols=169  Identities=15%  Similarity=0.150  Sum_probs=119.4

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++++|||++++++++++++++|++++...+                          ++.    .+++++++++||+|.
T Consensus       116 ~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~--------------------------~~~----~~~~l~aa~~~a~~~  165 (296)
T PRK15430        116 LGMIFLGERFRRMQWLAVILAICGVLVQLWTF--------------------------GSL----PIIALGLAFSFAFYG  165 (296)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc--------------------------CCc----cHHHHHHHHHHHHHH
Confidence            88999999999999999999999999985210                          000    146888999999999


Q ss_pred             HHHHhhhhhCCc-cchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 046895          102 VIQAKMSEEYPC-QFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLF  180 (275)
Q Consensus       102 v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~  180 (275)
                      +..|+...+... ....+.+.+.++.....+.   .......+.......+..+.+.++ .+.++|.+|++++++.++++
T Consensus       166 i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~  241 (296)
T PRK15430        166 LVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLST  241 (296)
T ss_pred             HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHH
Confidence            999987432111 0122233333333222111   111111111111111232344454 67899999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      ++.+.+++|+++.++++++++|++++.+++|+++++.|+.+...
T Consensus       242 ~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        242 LGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888877653

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.71  E-value=6.2e-16  Score=126.30  Aligned_cols=194  Identities=15%  Similarity=0.089  Sum_probs=149.6

Q ss_pred             CCccHHHHHHHHHHHHHh-----------------------------HHHhccccccCcceeehhhhhhhhhhhhhhhcC
Q 046895            4 PKLNLKILFQAFLCGLFG-----------------------------LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRG   54 (275)
Q Consensus         4 ~~~~~~~~~~~~~~g~~g-----------------------------l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~   54 (275)
                      .|+++++++.+..-|..-                             ++.+-.|   +.+..+++.+++.|+.++.. ++
T Consensus        64 ~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~sR---r~~d~vwvaLAvlGi~lL~p-~~  139 (292)
T COG5006          64 RRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSSR---RLRDFVWVALAVLGIWLLLP-LG  139 (292)
T ss_pred             hccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhcc---chhhHHHHHHHHHHHHhhee-cc
Confidence            577888888777766544                             2222222   33456788889999998852 11


Q ss_pred             ccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHH
Q 046895           55 VEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFAL  134 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  134 (275)
                      +                      +...-+..|..+++.++.||+.|.+..||..+..+. ..-+...+.+++++..|+..
T Consensus       140 ~----------------------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a~gm~vAaviv~Pig~  196 (292)
T COG5006         140 Q----------------------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVAVGMLVAALIVLPIGA  196 (292)
T ss_pred             C----------------------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHHHHHHHHHHHHhhhhh
Confidence            1                      233456799999999999999999999999876676 77788999999999999887


Q ss_pred             HhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHH
Q 046895          135 CMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATL  214 (275)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~l  214 (275)
                      ....+  .  .........-+..+++++++.|.+-..++++++....+.+++++|.++++.|++++||++|+.||+|+..
T Consensus       197 ~~ag~--~--l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~  272 (292)
T COG5006         197 AQAGP--A--LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAA  272 (292)
T ss_pred             hhcch--h--hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            54332  1  1111223334667889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccc
Q 046895          215 IVCGLYAVLWGKGK  228 (275)
Q Consensus       215 i~~G~~l~~~~~~~  228 (275)
                      |+.+..-.....+|
T Consensus       273 ViaAsaG~~lt~~~  286 (292)
T COG5006         273 VIAASAGSTLTARK  286 (292)
T ss_pred             HHHHHhccccccCC
Confidence            99888755544333

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.70  E-value=1e-15  Score=132.24  Aligned_cols=173  Identities=23%  Similarity=0.358  Sum_probs=133.0

Q ss_pred             HHH-hccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcc-hhhHhHHHHHHHHHHHH
Q 046895           22 LEK-LGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGK-RFLGALFALGSCFGYAI   99 (275)
Q Consensus        22 l~~-~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~l~a~~~~a~   99 (275)
                      +++ +++|||++++++.+++++++|++++...+..                        ... ...|++++++++++|++
T Consensus       113 ~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~------------------------~~~~~~~g~~~~l~a~~~~a~  168 (292)
T COG0697         113 LAVLLLLGERLSLLQILGILLALAGVLLILLGGGG------------------------GGILSLLGLLLALAAALLWAL  168 (292)
T ss_pred             HHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc------------------------chhHHHHHHHHHHHHHHHHHH
Confidence            775 6679999999999999999999999732110                        001 57899999999999999


Q ss_pred             HHHHHHhhhhhCCccchHHH-HHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 046895          100 WLVIQAKMSEEYPCQFSSTA-LMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGP  178 (275)
Q Consensus       100 ~~v~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~  178 (275)
                      +.+..|+.. +.++ ..... +.+.  ............. .. . ......+..+.+.|++.+++++.+|++++++.++
T Consensus       169 ~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~  241 (292)
T COG0697         169 YTALVKRLS-RLGP-VTLALLLQLL--LALLLLLLFFLSG-FG-A-PILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGA  241 (292)
T ss_pred             HHHHHHHhc-CCCh-HHHHHHHHHH--HHHHHHHHHHhcc-cc-c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999887 4454 44444 3333  1111111111111 11 1 1112346668888988888999999999999999


Q ss_pred             eehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          179 LFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       179 ~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      ..++.+.+++|+++.++++++++|+++..+++|+++++.|+++...+
T Consensus       242 ~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         242 SLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999998765

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.68  E-value=7.5e-16  Score=112.99  Aligned_cols=135  Identities=21%  Similarity=0.122  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHH
Q 046895           87 ALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMV  166 (275)
Q Consensus        87 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  166 (275)
                      .+++++++++++...++.|-..++.++ ...+..|.++..+++..+.+..++.. .....+...|..+.+.|+ ++++++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp-~~At~IRtiVi~~~l~~v~~~~g~~~-~~~~~~~k~~lflilSGl-a~glsw   81 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVDP-DFATTIRTIVILIFLLIVLLVTGNWQ-AGGEIGPKSWLFLILSGL-AGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCc-cHHHHHHHHHHHHHHHHHHHhcCcee-cccccCcceehhhhHHHH-HHHHHH
Confidence            588999999999999999999998998 88899999999888888887766422 221223456777777785 999999


Q ss_pred             HHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          167 TLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       167 ~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      .+|+++++...++++..+..+.|+++++++++++||++|..+|+|+.+|++|++++.+
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            9999999999999999999999999999999999999999999999999999988654

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.64  E-value=1.2e-14  Score=121.68  Aligned_cols=172  Identities=13%  Similarity=0.188  Sum_probs=139.6

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++++|||+++.|+++++++.+|+...+...++                          -    -+.++.-+++|+.|.
T Consensus       115 lG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~--------------------------l----pwval~la~sf~~Yg  164 (293)
T COG2962         115 LGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS--------------------------L----PWVALALALSFGLYG  164 (293)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC--------------------------C----cHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988653322                          1    256777789999999


Q ss_pred             HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895          102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA  181 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~  181 (275)
                      ..-|+.  +.++ .+-....++.-....+.+.+..+...+-....+...++.+.+.|. .++++..+|..+-++++-+..
T Consensus       165 l~RK~~--~v~a-~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~  240 (293)
T COG2962         165 LLRKKL--KVDA-LTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTL  240 (293)
T ss_pred             HHHHhc--CCch-HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHH
Confidence            998876  3666 777777777777777777766654332011123345665677776 789999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      ++++|.+|..-.++++++++|+++..+++..+++-.|.+++..+.-
T Consensus       241 G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         241 GFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999876543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.63  E-value=3e-14  Score=124.62  Aligned_cols=191  Identities=18%  Similarity=0.182  Sum_probs=147.0

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++.+++|+|+++++++++++..+|+++....+..+..                ..+........|+++.+++.++.|+..
T Consensus       107 ~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~----------------~~~~~~~~~~~G~~ll~~sl~~~a~~~  170 (303)
T PF08449_consen  107 LGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS----------------SSNSSSFSSALGIILLLLSLLLDAFTG  170 (303)
T ss_pred             HHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc----------------ccccccccchhHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999998764432110                111111223349999999999999999


Q ss_pred             HHHHhhhhhCC-ccchHHHHHHHHHHHHHHHHHHH--hccCccccch--hhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895          102 VIQAKMSEEYP-CQFSSTALMCVMGAIQAVVFALC--MEKDWSQWKL--GWNIRLLTVAYSGIVASGLMVTLISWCVRTR  176 (275)
Q Consensus       102 v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~  176 (275)
                      +++++..++.+ +....+++..+++.+..++..+.  .+...+.++.  ..+..+..++... +...+++...++..++.
T Consensus       171 ~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i~~~~~~~  249 (303)
T PF08449_consen  171 VYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFIFYLIKKF  249 (303)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            99999987554 22678888888988888877776  3332222221  2222333334444 46778888888999999


Q ss_pred             CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895          177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE  229 (275)
Q Consensus       177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~  229 (275)
                      ++...+++..+..+++++++++++++++++.+|+|.++++.|+.+..+.++|+
T Consensus       250 ~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  250 SALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            99999999999999999999999999999999999999999999998876654

; GO: 0055085 transmembrane transport

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.63  E-value=9.1e-17  Score=132.04  Aligned_cols=190  Identities=13%  Similarity=0.033  Sum_probs=149.1

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++|.++|||+++...++..+.+.|+++++.  .+....-.          ....+.+.......|...++.++++-|...
T Consensus       140 faw~~LkE~~t~~eaL~s~itl~GVVLIvR--PpFlFG~~----------t~g~~~s~~~~~~~gt~aai~s~lf~asvy  207 (346)
T KOG4510|consen  140 FAWAFLKEPFTKFEALGSLITLLGVVLIVR--PPFLFGDT----------TEGEDSSQVEYDIPGTVAAISSVLFGASVY  207 (346)
T ss_pred             HHHHHHcCCCcHHHHHHHHHhhheEEEEec--CCcccCCC----------ccccccccccccCCchHHHHHhHhhhhhHH
Confidence            899999999999999999999999999972  32221100          011111222455677899999999999999


Q ss_pred             HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895          102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA  181 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~  181 (275)
                      ++.|+..++.+. .....+..+++++..++.....+.  ..++... .+|+.++.+|+ .+.+++.+.+.++|+-.+..+
T Consensus       208 IilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig~--~~lP~cg-kdr~l~~~lGv-fgfigQIllTm~lQiErAGpv  282 (346)
T KOG4510|consen  208 IILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIGA--VQLPHCG-KDRWLFVNLGV-FGFIGQILLTMGLQIERAGPV  282 (346)
T ss_pred             HHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhccc--eecCccc-cceEEEEEehh-hhhHHHHHHHHHhhhhccCCe
Confidence            999999998887 666677777777777766665542  2333333 45665778888 567999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcccc
Q 046895          182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGK  228 (275)
Q Consensus       182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~  228 (275)
                      +++.+.+.+++.+|.+++++|.||++.|.|+++++...+.....|..
T Consensus       283 aim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa  329 (346)
T KOG4510|consen  283 AIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWA  329 (346)
T ss_pred             ehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHh
Confidence            99999999999999999999999999999999999998887665443

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.60  E-value=6.2e-15  Score=111.46  Aligned_cols=125  Identities=23%  Similarity=0.317  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHh
Q 046895           95 FGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVR  174 (275)
Q Consensus        95 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~  174 (275)
                      ++||.+.++.|+..++.|+ .....+++..+.+ ..+...+.....  ....+...+..+++.+++++++++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISP-LSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccCCH-HHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            4789999999999999888 9999999999998 666666554432  12222344666788888788999999999999


Q ss_pred             cCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895          175 TRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL  223 (275)
Q Consensus       175 ~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~  223 (275)
                      +.+++.++.+.+++|+++.++++++++|++++.+++|+++++.|++++.
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.58  E-value=7.6e-15  Score=126.20  Aligned_cols=188  Identities=16%  Similarity=0.193  Sum_probs=148.5

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++.++..||+++.+++++.+++.|+++++++|+..                  .++.......+|+++++++++.||+|.
T Consensus       202 la~if~~e~ft~sKllav~~si~GViiVt~~~s~~------------------~~~~~a~~~llG~llaL~sA~~YavY~  263 (416)
T KOG2765|consen  202 LAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ------------------NSDLPASRPLLGNLLALLSALLYAVYT  263 (416)
T ss_pred             HHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc------------------cccCCccchhHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999998765421                  112344567899999999999999999


Q ss_pred             HHHHhhhhhCCccchHHHH---HHHHHHHHHHHHHHHhcc-CccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895          102 VIQAKMSEEYPCQFSSTAL---MCVMGAIQAVVFALCMEK-DWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG  177 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~  177 (275)
                      ++.|+-..+.+.++.+..+   ..++..+++.|..++... ..+.++.++......++..++++++++-++|.+|+-..+
T Consensus       264 vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs  343 (416)
T KOG2765|consen  264 VLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTS  343 (416)
T ss_pred             HHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhcc
Confidence            9999877665322443333   333444555544443322 234455555555666778889999999999999999999


Q ss_pred             ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      |.++++-+.++.+.+++...++-+.++|+.+++|.+.|++|.+++++...
T Consensus       344 ~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  344 PLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             chhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            99999999999999999999999999999999999999999999876543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.57  E-value=1e-13  Score=120.31  Aligned_cols=174  Identities=15%  Similarity=0.138  Sum_probs=129.0

Q ss_pred             HHHhccccccCcce----eehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAK----VLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGY   97 (275)
Q Consensus        22 l~~~~~~e~~s~~~----~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~   97 (275)
                      .+.+++||+.++++    .+|++++++|++++...+.+.                  ..+.+..+...|.+++++++++|
T Consensus       103 ~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~------------------~~~~~~~~~~~Gi~~~l~sg~~y  164 (290)
T TIGR00776       103 FGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS------------------AGIKSEFNFKKGILLLLMSTIGY  164 (290)
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc------------------cccccccchhhHHHHHHHHHHHH
Confidence            67889999999999    999999999999885322110                  00000023467999999999999


Q ss_pred             HHHHHHHHhhhhhCCccchHHHHHHH---HHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHh
Q 046895           98 AIWLVIQAKMSEEYPCQFSSTALMCV---MGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVR  174 (275)
Q Consensus        98 a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~  174 (275)
                      ++|.+..|..  +.++ ....+.++.   +++++.....  . .. .++  .... .+..+..|++ .++++.+|..+.+
T Consensus       165 ~~~~~~~~~~--~~~~-~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~--~~~~-~~~~~~~Gi~-~~ia~~~y~~~~~  233 (290)
T TIGR00776       165 LVYVVVAKAF--GVDG-LSVLLPQAIGMVIGGIIFNLGH--I-LA-KPL--KKYA-ILLNILPGLM-WGIGNFFYLFSAQ  233 (290)
T ss_pred             HHHHHHHHHc--CCCc-ceehhHHHHHHHHHHHHHHHHH--h-cc-cch--HHHH-HHHHHHHHHH-HHHHHHHHHHHcc
Confidence            9999999976  3666 666444443   3333222221  1 10 111  2222 3334447887 6999999999999


Q ss_pred             -cCCceehhhhhhHHHHHHHHHHHHHhcCccchhhh----hhHHHHHHHHHHhhh
Q 046895          175 -TRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSI----LGATLIVCGLYAVLW  224 (275)
Q Consensus       175 -~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~----iG~~li~~G~~l~~~  224 (275)
                       +.+++.++.+.+.+|+.+.++++++++|+.++.++    +|+++++.|+++...
T Consensus       234 ~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       234 PKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence             99999999999999999999999999999999999    999999999998754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00688 rarD rarD protein

Probab=99.51  E-value=3.3e-13  Score=115.18  Aligned_cols=143  Identities=10%  Similarity=0.101  Sum_probs=98.8

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++++|||++++++++++++++|++++...++                          +.    .+++++++++|+.|.
T Consensus       113 la~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~--------------------------~~----~~~~l~aa~~~a~~~  162 (256)
T TIGR00688       113 LGRVFLKERISRFQFIAVIIATLGVISNIVLKG--------------------------SL----PWEALVLAFSFTAYG  162 (256)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC--------------------------Cc----hHHHHHHHHHHHHHH
Confidence            889999999999999999999999998752110                          01    146789999999999


Q ss_pred             HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895          102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA  181 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~  181 (275)
                      +..|+..++ +. ..... ..+.......+..+..+. ...........|..+++.|++ +.++|.+|++++++.+++++
T Consensus       163 i~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~  237 (256)
T TIGR00688       163 LIRKALKNT-DL-AGFCL-ETLSLMPVAIYYLLQTDF-ATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLL  237 (256)
T ss_pred             HHHhhcCCC-Cc-chHHH-HHHHHHHHHHHHHHHhcc-CcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHH
Confidence            999987542 32 22111 112222222211111111 111111112357767777875 88999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHH
Q 046895          182 SIFNPLMLVVVAILSSLI  199 (275)
Q Consensus       182 s~~~~~~pv~~~i~~~li  199 (275)
                      +++.|++|+++.+++++.
T Consensus       238 s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       238 GLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.44  E-value=3.3e-12  Score=111.41  Aligned_cols=139  Identities=22%  Similarity=0.257  Sum_probs=111.7

Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccc--hhhhhhHHHHHHHHH
Q 046895           82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWK--LGWNIRLLTVAYSGI  159 (275)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~  159 (275)
                      +...|.+++++++++|+...+..|.. .+.++ ....++|+.++.++..+......+ .....  ......+. ....+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~-~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPA-DEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKIF-MLAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCH-HHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHHH-HHHHHH
Confidence            56689999999999999999999875 56787 899999999998877766544322 11110  00112222 334566


Q ss_pred             hhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          160 VASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       160 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      +..+..+.++++++++.+++.++++.++.|+++.++++++++|++++.+|+|+++.++|+++...
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            67788899999999999999999999999999999999999999999999999999999998753

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.41  E-value=7.7e-12  Score=101.46  Aligned_cols=182  Identities=19%  Similarity=0.115  Sum_probs=146.8

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++..+.|++.+|++.+++++.++|+.+... +..                  ...+....+..+|.++.+++-..-+...
T Consensus       128 lGVl~~~KsY~w~kY~cVL~IV~GValFmY-K~~------------------Kv~g~e~~t~g~GElLL~lSL~mDGlTg  188 (337)
T KOG1580|consen  128 LGVLFAHKSYHWRKYCCVLMIVVGVALFMY-KEN------------------KVGGAEDKTFGFGELLLILSLAMDGLTG  188 (337)
T ss_pred             eehhhhcccccHHHHHHHHHHHHHHHHhhc-ccc------------------ccCCCcccccchHHHHHHHHHHhcccch
Confidence            889999999999999999999999999854 321                  1112445578899999999999999988


Q ss_pred             HHHHhhhhhCC-ccchHHHHHHHHHHHHHHHHHHHhccCcc--ccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 046895          102 VIQAKMSEEYP-CQFSSTALMCVMGAIQAVVFALCMEKDWS--QWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGP  178 (275)
Q Consensus       102 v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~  178 (275)
                      ..+.+...... ...+++....+.+.+.+....++.+..+.  .+....+..|+-+..+++ ++.+++++.+.-+...+|
T Consensus       189 ~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgP  267 (337)
T KOG1580|consen  189 SIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGP  267 (337)
T ss_pred             hHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCC
Confidence            88887766442 22567888888999888877777765331  122222344555777777 889999999999999999


Q ss_pred             eehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895          179 LFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL  223 (275)
Q Consensus       179 ~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~  223 (275)
                      ...+++....-+|+++.++++++++++..||+|..+++.|...=.
T Consensus       268 LtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  268 LTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             eeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            999999999999999999999999999999999999999987743

>TIGR00688 rarD rarD protein

Probab=99.38  E-value=9.3e-12  Score=106.27  Aligned_cols=137  Identities=13%  Similarity=0.138  Sum_probs=108.9

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCc---cccchhhhhh-HHHHHHHHHh
Q 046895           85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDW---SQWKLGWNIR-LLTVAYSGIV  160 (275)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~g~~  160 (275)
                      .|.++.++++++|+...+..|.. .+.++ .++.++|++++++++.+......+..   ..++...... +..+...|+ 
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~-~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KPLPA-TDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL-   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-ccCCH-HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH-
Confidence            48899999999999999999984 56787 99999999999888766654433211   1111111111 333445555 


Q ss_pred             hhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          161 ASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       161 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      ...+.+.++++++++++++.++++.++.|+++.++++++++|+++..+++|.++.++|+++...
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999987654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.32  E-value=3e-11  Score=100.19  Aligned_cols=191  Identities=14%  Similarity=0.081  Sum_probs=128.9

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++++|+|.+.+|..++.+..+|+++.++.++.+...-       .++-+..+..++...+..|..+..+|-+.-|...
T Consensus       108 ~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~-------~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mg  180 (330)
T KOG1583|consen  108 LGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSK-------LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMG  180 (330)
T ss_pred             HHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhh-------hcccccCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988766544320       1111122233445567889999999999999999


Q ss_pred             HHHHhhhhhCCcc-chHHHHHHHHHHHHHHHHHHHhccCc-ccc--------------chhhhhhHHHHHHHHHhhhHHH
Q 046895          102 VIQAKMSEEYPCQ-FSSTALMCVMGAIQAVVFALCMEKDW-SQW--------------KLGWNIRLLTVAYSGIVASGLM  165 (275)
Q Consensus       102 v~~k~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~l~~~g~~~~~~~  165 (275)
                      ++++...+++..+ -...++..    .+.+|..++.+.++ ++|              ...-+..|+ .++..++....+
T Consensus       181 iyqE~~Y~kyGKh~~EalFytH----~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~-yLl~n~L~Qy~C  255 (330)
T KOG1583|consen  181 IYQETTYQKYGKHWKEALFYTH----FLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWV-YLLFNVLTQYFC  255 (330)
T ss_pred             HHHHHHHHHhcCChHHHHHHHH----HhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHH-HHHHHHHHHHHH
Confidence            9888777765432 23444444    44445555444322 111              111122233 233222222222


Q ss_pred             HHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          166 VTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       166 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      -=.-+..-...++..+++...+.-.++.+++.++++++++++.|+|..++++|.+++..
T Consensus       256 ikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~  314 (330)
T KOG1583|consen  256 IKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN  314 (330)
T ss_pred             HHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            22222333556788899999999999999999999999999999999999999999753

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.30  E-value=1.1e-11  Score=107.33  Aligned_cols=178  Identities=17%  Similarity=0.186  Sum_probs=143.7

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      +++++.+|+.++..+..++....|+.+.+.                          .+...++.|...++++.+..+..+
T Consensus       126 ~~~~~~~~~~s~~~~lsL~piv~GV~ias~--------------------------~e~~fn~~G~i~a~~s~~~~al~~  179 (316)
T KOG1441|consen  126 LSVLLLGKTYSSMTYLSLLPIVFGVAIASV--------------------------TELSFNLFGFISAMISNLAFALRN  179 (316)
T ss_pred             HHHHHhCCCCcceEEEEEEEeeeeEEEeee--------------------------ccccccHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999874                          233477899999999999999999


Q ss_pred             HHHHhhhh----hCCccchHHHHHHHHHHHHHH-HHHHHhccCcc------ccchhhhhhHHHHHHHHHhhhHHHHHHHH
Q 046895          102 VIQAKMSE----EYPCQFSSTALMCVMGAIQAV-VFALCMEKDWS------QWKLGWNIRLLTVAYSGIVASGLMVTLIS  170 (275)
Q Consensus       102 v~~k~~~~----~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  170 (275)
                      ++.++..+    +.++ ++...++..++.+.++ |+....+++..      .|...    .+.+++..+ ...+-...-+
T Consensus       180 I~~~~ll~~~~~~~~~-~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~----~~~~~~~sv-~~f~~Nls~f  253 (316)
T KOG1441|consen  180 ILSKKLLTSKGESLNS-MNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT----FLILLLNSV-LAFLLNLSAF  253 (316)
T ss_pred             HHHHHhhhccccccCc-hHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh----hHHHHHHHH-HHHHHHHHHH
Confidence            99999985    3566 8888888889998888 76665444322      22222    222333333 3344455667


Q ss_pred             HHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccccc
Q 046895          171 WCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMK  231 (275)
Q Consensus       171 ~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~~  231 (275)
                      ..+.+++|...++.....-+++++.++++++++.|+.+.+|+++.++|++++.+.|.++++
T Consensus       254 ~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  254 LVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             HHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            8999999999999999999999999999999999999999999999999999887665443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.28  E-value=1.2e-10  Score=100.73  Aligned_cols=133  Identities=15%  Similarity=0.079  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHH
Q 046895           87 ALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMV  166 (275)
Q Consensus        87 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  166 (275)
                      .++.++++++|+...++.|+..++.++   ...+++..+++...++...... ...++... ..++..+..+.+.....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPD---FLWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence            478899999999999999987766443   3455566666666665554311 12233222 223334445555778889


Q ss_pred             HHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          167 TLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       167 ~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      .++++++++.+++.++.+.++.|+++.++++++++|+++..+|+|.++++.|+++...
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999998764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.27  E-value=3.8e-12  Score=104.40  Aligned_cols=179  Identities=15%  Similarity=0.096  Sum_probs=139.4

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      +.|+++|.|.++.+..|+.+|++|++++++.|-.                  +.+.+++.+...|+++.++++-+||+.+
T Consensus       121 lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~------------------agd~aggsnp~~GD~lvi~GATlYaVSN  182 (336)
T KOG2766|consen  121 LSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH------------------AGDRAGGSNPVKGDFLVIAGATLYAVSN  182 (336)
T ss_pred             HHHHHHHHHHhhheeeeEEeEecceEEEEEeeec------------------cccccCCCCCccCcEEEEecceeeeecc
Confidence            8999999999999999999999999999753321                  1223455677899999999999999999


Q ss_pred             HHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeh
Q 046895          102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFA  181 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~  181 (275)
                      ++...+.++.|. ...+....+++++++.+-..+.........+.+  .....+. ..+...+-|.+....+|..+++..
T Consensus       183 v~EEflvkn~d~-~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~--~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~  258 (336)
T KOG2766|consen  183 VSEEFLVKNADR-VELMGFLGLFGAIISAIQFIFERHHVSTLHWDS--AIFLYLR-FALTMFLLYSLAPILIKTNSATMF  258 (336)
T ss_pred             ccHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHhhhccceeeEeehH--HHHHHHH-HHHHHHHHHHhhHHheecCCceEE
Confidence            999999999998 999999999999999998554333222222221  1221222 223444555555677788999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          182 SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       182 s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      ++-....-.++.+.  ..+|-+.+|...++...+..|.+++..
T Consensus       259 nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  259 NLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST  299 (336)
T ss_pred             EhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence            99999999999888  668888999999999999999998843

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.24  E-value=3.1e-10  Score=89.06  Aligned_cols=138  Identities=17%  Similarity=0.162  Sum_probs=109.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhhh------CCccchHHHHHHHHHHHHHHHHHHHhccCccccchh---------hhhh
Q 046895           86 GALFALGSCFGYAIWLVIQAKMSEE------YPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLG---------WNIR  150 (275)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~  150 (275)
                      |.+++++|.++.+++.++.|+..++      ..++.++..+....+.+.+.+..++.+.........         ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6789999999999999999988776      223378888999999999999888876533111110         1133


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          151 LLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       151 ~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      +..++..|+ ...+.....+..+++.+|...++...+..+..+++++++++|++|+.+++|+++.++|.+++.+
T Consensus        81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            443444455 4456667778999999999999999999999999999999999999999999999999988753

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.20  E-value=5.6e-10  Score=99.45  Aligned_cols=140  Identities=11%  Similarity=0.072  Sum_probs=113.8

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhH
Q 046895           84 FLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASG  163 (275)
Q Consensus        84 ~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  163 (275)
                      ..-++.+++.-++|+.+.++.|...+..-++....++|+.+++++++++.+..++... ++......+..+..+|++. .
T Consensus        12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-~~~~~~~~~~~l~l~g~~g-~   89 (358)
T PLN00411         12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-LPPLSVSILSKIGLLGFLG-S   89 (358)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHH-H
Confidence            3557888999999999999999999876555999999999999999888776543211 1111122345566677766 5


Q ss_pred             HHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHH------hcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          164 LMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLI------LDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       164 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li------~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      +.+.+++.++++++++.++++.++.|+++.++++++      ++|+++..+++|+++.++|+.++...
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            667788999999999999999999999999999999      69999999999999999999887643

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.14  E-value=1.1e-09  Score=92.32  Aligned_cols=188  Identities=12%  Similarity=0.115  Sum_probs=145.9

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++.++.|+|++..+.+...+.-.|+.+..+.+..+                 ...+...++.+.|..+....-..=++-+
T Consensus       126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~-----------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn  188 (327)
T KOG1581|consen  126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD-----------------SSSKSGRENSPIGILLLFGYLLFDGFTN  188 (327)
T ss_pred             HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC-----------------CccccCCCCchHhHHHHHHHHHHHhhHH
Confidence            88999999999999999999999999887653221                 1122334577899999999999999999


Q ss_pred             HHHHhhhhh--CCccchHHHHHHHHHHHHHHHHHHHhccCccccchh--hhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895          102 VIQAKMSEE--YPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLG--WNIRLLTVAYSGIVASGLMVTLISWCVRTRG  177 (275)
Q Consensus       102 v~~k~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~  177 (275)
                      ..+.++.+.  .+. ..++....+++++......+..+...+.....  .+..++-+++... +.++++.+.++-+++.+
T Consensus       189 ~tQd~lf~~~k~s~-~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FG  266 (327)
T KOG1581|consen  189 ATQDSLFKKYKVSS-LHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFG  266 (327)
T ss_pred             hHHHHHhccCCccH-hHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcc
Confidence            999888873  344 77888888888888776644433322222111  1222333555555 66789999999999999


Q ss_pred             ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcccc
Q 046895          178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGK  228 (275)
Q Consensus       178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~  228 (275)
                      +...+.++.+.-++++.++.+.++.++++.||+|..+++.|+.+=...+++
T Consensus       267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999986655444

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.14  E-value=2.2e-09  Score=81.45  Aligned_cols=122  Identities=18%  Similarity=0.157  Sum_probs=94.9

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHH
Q 046895           85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGL  164 (275)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  164 (275)
                      .|+++.+++.++-+...++.|+..++.+. ...... . .    ......  .   .         ....+++|++++++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~-~----~~~~~~--~---~---------p~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F-I----AALLAF--G---L---------ALRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H-H----HHHHHH--h---c---------cHHHHHHHHHHHHH
Confidence            47889999999999999999998877654 332221 1 0    000000  0   0         11146778889999


Q ss_pred             HHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHH--HhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          165 MVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL--ILDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       165 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~l--i~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      ++.+|.+++++.+.+.+..+....++++.+.++.  +++|++|+.+++|+++|++|++++.+.++
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            9999999999999999999999999888888885  79999999999999999999999876444

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.14  E-value=2.1e-09  Score=90.82  Aligned_cols=183  Identities=15%  Similarity=0.194  Sum_probs=121.4

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      +.++++|+|++++||+++.+.++|++++-..+......         +++.....++.......|.++.++++++-|+..
T Consensus        60 ~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~---------~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~ag  130 (244)
T PF04142_consen   60 FSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN---------SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAG  130 (244)
T ss_pred             HHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc---------ccccccccccccchhHhHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999985422111000         000000111234567899999999999999999


Q ss_pred             HHHHhhhhhCCccchHHHHH-HHHHHHHHHHHHHHhccC-ccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCce
Q 046895          102 VIQAKMSEEYPCQFSSTALM-CVMGAIQAVVFALCMEKD-WSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPL  179 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~  179 (275)
                      ++.++..|+.+........+ .+.+.++.++...+.+.. ...........++  .+.-++..+.+=.+....+|+.+..
T Consensus       131 Vy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~--~~~~i~~~a~gGllva~v~KyadnI  208 (244)
T PF04142_consen  131 VYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWW--VWIVIFLQAIGGLLVAFVLKYADNI  208 (244)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchH--HHHHHHHHHHhhHHHHHHHHHHhHH
Confidence            99999999764334444443 445555555444333221 1111111111111  2222223333444556788999999


Q ss_pred             ehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHH
Q 046895          180 FASIFNPLMLVVVAILSSLILDEKLHLGSILGATLI  215 (275)
Q Consensus       180 ~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li  215 (275)
                      .=+....+..+++.++++++++.+++....+|+.++
T Consensus       209 ~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  209 VKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            999999999999999999999999999999998753

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.14  E-value=6.8e-10  Score=82.75  Aligned_cols=108  Identities=17%  Similarity=0.243  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHH
Q 046895          119 ALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSL  198 (275)
Q Consensus       119 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~l  198 (275)
                      .+++.++.+.......+..+..+.++......+..++..|++....++.++++++++.++ .+.++..+.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence            467777777777766664432222222222334445666776667899999999999994 8889999999999999999


Q ss_pred             HhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          199 ILDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       199 i~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      +++|+++..+++|.+++++|++++.+.+.
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999987543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.12  E-value=2.2e-09  Score=93.45  Aligned_cols=132  Identities=11%  Similarity=0.079  Sum_probs=108.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHH
Q 046895           87 ALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMV  166 (275)
Q Consensus        87 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  166 (275)
                      .+..++..+.|+...+..|...++.++ ....++|+.+++++.+++.........     ....+.....+|++.....+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p-~~~~~~R~~~a~l~ll~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESWPP-LMMAGVRFLIAGILLLAFLLLRGHPLP-----TLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHHHHHHHH
Confidence            466788899999999999988888888 999999999999888877654332211     12335545667776666778


Q ss_pred             HHHHHHH-hcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          167 TLISWCV-RTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       167 ~~~~~a~-~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      .+++.+. ++.+++.++++.++.|+++.+++++ ++|+++..+++|.++.++|+.++...
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            8888898 9999999999999999999999986 79999999999999999999887643

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.09  E-value=1.5e-09  Score=92.68  Aligned_cols=119  Identities=18%  Similarity=0.080  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895           97 YAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTR  176 (275)
Q Consensus        97 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~  176 (275)
                      |+...+..|...+...+......++++.+.+...+.....         .....+...+..|.+...+.+.++++++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5667788888766544548888888888887776654322         1123344566777778889999999999999


Q ss_pred             CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      +++.++++..++|+++.++++++++|++++.+++|+.+.++|++++..
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            999999999999999999999999999999999999999999998764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.08  E-value=3.5e-09  Score=92.32  Aligned_cols=131  Identities=14%  Similarity=0.082  Sum_probs=99.5

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHH
Q 046895           85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGL  164 (275)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  164 (275)
                      .+++++++++++|+...+..|...+..+| ....++|+..++++..++..   .  +..+..   .+. .+..+.+....
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P-~~~~~~R~~~a~l~l~~~~~---~--~~~~~~---~~~-~~~~~~l~~~~   73 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLGP-VGGAAMIYSVSGLLLLLTVG---F--PRLRQF---PKR-YLLAGGLLFVS   73 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHHHHcc---c--cccccc---cHH-HHHHHhHHHHH
Confidence            45788999999999999999999989988 99999999999888775421   1  111111   111 22223333344


Q ss_pred             HHHHHHHHH----hcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          165 MVTLISWCV----RTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       165 ~~~~~~~a~----~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      .+.+++.++    +..++..++++.++.|+++.++++++++|++++.+++|+++.++|++++...
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            444455555    4567888899999999999999999999999999999999999999887643

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.08  E-value=3.1e-09  Score=92.78  Aligned_cols=127  Identities=15%  Similarity=0.154  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHH
Q 046895           87 ALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMV  166 (275)
Q Consensus        87 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  166 (275)
                      .+++++++++|+...+..|...++.++ ..+.++|+.++++...++..  ..+   .+      +..++..|++.....+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p-~~~~~~R~~~a~~~l~~~~~--~~~---~~------~~~~~~~g~~~~~~~~   73 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPP-LMLAGLRFMLVAFPAIFFVA--RPK---VP------LNLLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHhc--CCC---Cc------hHHHHHHHHHHHHHHH
Confidence            366899999999999999998888888 99999999988765544321  111   11      1123334544444555


Q ss_pred             HHHHHHHhc-CCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          167 TLISWCVRT-RGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       167 ~~~~~a~~~-~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      .+++.++++ .+++.++++.++.|+++.++++++++|+++..+++|+++.++|+.++...
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            667788887 67889999999999999999999999999999999999999999987743

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.03  E-value=5e-09  Score=88.19  Aligned_cols=141  Identities=20%  Similarity=0.170  Sum_probs=115.4

Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhh-hhhHHHHHHHHHh
Q 046895           82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGW-NIRLLTVAYSGIV  160 (275)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~  160 (275)
                      +...|+++++.|-+.|+....+.|.+ +..+. ..+..+|.+.+..+.+....+..+....+.... +..+..+...++ 
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~-~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-   80 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYFKLL-EPLPA-TEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-   80 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHH-ccCCH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-
Confidence            34579999999999999999998765 56777 899999999999988888777655333333222 234454445554 


Q ss_pred             hhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          161 ASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       161 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      -....+.+|.++..+.....+|+-.+++|++.+++|.++++|+++..||++.++..+|+....+.
T Consensus        81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999876543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.01  E-value=1.9e-08  Score=87.02  Aligned_cols=188  Identities=14%  Similarity=0.218  Sum_probs=128.3

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      +..+++++|++++||.++++.++|+.++-....+               +.++.+.......+.|....+.++++-++..
T Consensus       135 f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~---------------~~~a~~~~~~~n~~~G~~avl~~c~~SgfAg  199 (345)
T KOG2234|consen  135 FSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS---------------PTGAKSESSAQNPFLGLVAVLVACFLSGFAG  199 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC---------------CCCccCCCcccchhhhHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999998521111               1111112334567899999999999999999


Q ss_pred             HHHHhhhhhCCccchHHHHHH-HHHHHHHHHHHHHhccC-cc--ccchhh-hhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895          102 VIQAKMSEEYPCQFSSTALMC-VMGAIQAVVFALCMEKD-WS--QWKLGW-NIRLLTVAYSGIVASGLMVTLISWCVRTR  176 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-~~--~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~~a~~~~  176 (275)
                      ++.++..|+.+....+...++ +++.++.....+..+.. ..  .+-... ...|..     ++..+.+=.+....+|+.
T Consensus       200 vYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~v-----Vl~~a~gGLlvs~v~KyA  274 (345)
T KOG2234|consen  200 VYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLV-----VLLNAVGGLLVSLVMKYA  274 (345)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHH-----HHHHhccchhHHHHHHHh
Confidence            999999986554344444443 45555555444433321 11  011111 112222     223333334445667777


Q ss_pred             CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895          177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE  229 (275)
Q Consensus       177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~  229 (275)
                      +-..=+....+..+++.+.++.+++-++|....+|+.+++.++.++...+.+.
T Consensus       275 DnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  275 DNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            77777778888999999999999999999999999999999999998554443

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.97  E-value=5.3e-09  Score=86.85  Aligned_cols=202  Identities=14%  Similarity=0.149  Sum_probs=156.8

Q ss_pred             CCCCccHHHHHHHHHHHHHh-----------------------------HHHhccccccCcceeehhhhhhhhhhhhhhh
Q 046895            2 SRPKLNLKILFQAFLCGLFG-----------------------------LEKLGIRTRAGKAKVLGSLIGIGGAMILTFY   52 (275)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~g-----------------------------l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~   52 (275)
                      +++.++|+.+..+.++-+..                             .+.++=+.|.+++..++..+..+|.++.++.
T Consensus       100 k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLA  179 (367)
T KOG1582|consen  100 KRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLA  179 (367)
T ss_pred             cceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhc
Confidence            45567788887766653332                             5666778999999999999999999999876


Q ss_pred             cCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhhCC-ccchHHHHHHHHHHHHHHH
Q 046895           53 RGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSEEYP-CQFSSTALMCVMGAIQAVV  131 (275)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~  131 (275)
                      |+.                      .+...+..|+.+.-.|-++-|+-.-++.+..+..+ +...+.++...++.+.+..
T Consensus       180 Ds~----------------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~  237 (367)
T KOG1582|consen  180 DSQ----------------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFA  237 (367)
T ss_pred             ccc----------------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHH
Confidence            543                      33446778999999999999998888888877554 2256778888899988888


Q ss_pred             HHHHhccCccccchhhhhhH---HHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhh
Q 046895          132 FALCMEKDWSQWKLGWNIRL---LTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGS  208 (275)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~  208 (275)
                      .+...+.-++.|.......|   ...++.+. .+.++...-..-++..++..+..+....-.++++++++++..++|...
T Consensus       238 ~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy  316 (367)
T KOG1582|consen  238 PMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQY  316 (367)
T ss_pred             HHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHH
Confidence            88888776666665443323   22333333 556666666677888999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcc
Q 046895          209 ILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       209 ~iG~~li~~G~~l~~~~~  226 (275)
                      .-|..+++.|+++-.+.+
T Consensus       317 ~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  317 VWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             hhhhHHHHHHHHhhcccC
Confidence            999999999999976655

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.92  E-value=4.3e-08  Score=82.90  Aligned_cols=174  Identities=16%  Similarity=0.129  Sum_probs=125.3

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      .+.++-=|++++.-.+-+++..+|+++++.++                          .+....|..+...|.++-++-.
T Consensus       127 Fs~if~lEk~~w~L~l~v~lI~~Glflft~Ks--------------------------Tqf~i~Gf~lv~~aS~~sGlRW  180 (349)
T KOG1443|consen  127 FSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS--------------------------TQFNIEGFFLVLAASLLSGLRW  180 (349)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhheeEEEecc--------------------------cceeehhHHHHHHHHHhhhhhH
Confidence            45555559999999999999999999987532                          2366789999999999988888


Q ss_pred             HHHHhhhhhCC----ccchHHHHHHHHHHHHHHHHHHHhccCcc-----ccchhhh-hhHHHHHHHHHhhhHHHHHH---
Q 046895          102 VIQAKMSEEYP----CQFSSTALMCVMGAIQAVVFALCMEKDWS-----QWKLGWN-IRLLTVAYSGIVASGLMVTL---  168 (275)
Q Consensus       102 v~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~-~~~~~l~~~g~~~~~~~~~~---  168 (275)
                      .+.+.+.++.|    .+..+.........+.+++..+..++...     .+...+. ..+..+..+++ +..+++.+   
T Consensus       181 ~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~s  259 (349)
T KOG1443|consen  181 AFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFS  259 (349)
T ss_pred             HHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHH
Confidence            88887777554    22666666666666777777776665321     1222221 11222222222 22333332   


Q ss_pred             HHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895          169 ISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAV  222 (275)
Q Consensus       169 ~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~  222 (275)
                      -+..+.+++....++.....-+-+.+++..+.+++++...|+|..+...|+.+.
T Consensus       260 EflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  260 EFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            235678889999999999999999999999999999999999999999999998

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=4.1e-08  Score=83.80  Aligned_cols=181  Identities=14%  Similarity=0.127  Sum_probs=142.2

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      .+..++|.+++...+.++.+..+|.......|                          ......|+.+++...++-+.+.
T Consensus       120 ~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d--------------------------~sf~~~gY~w~~~n~~~~a~~~  173 (314)
T KOG1444|consen  120 GEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD--------------------------LSFNLRGYSWALANCLTTAAFV  173 (314)
T ss_pred             hHHhhcCcCchhhHHHHHHHHHHHHHhhcccc--------------------------ceecchhHHHHHHHHHHHHHHH
Confidence            78899999999999999999999988876422                          2244569999999999999999


Q ss_pred             HHHHhhhhhCC-ccchHHHHHHHHHHHHHHHHHHHhccCc---ccc-chhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895          102 VIQAKMSEEYP-CQFSSTALMCVMGAIQAVVFALCMEKDW---SQW-KLGWNIRLLTVAYSGIVASGLMVTLISWCVRTR  176 (275)
Q Consensus       102 v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~  176 (275)
                      +..|+..+..+ .++.+..+..+.+.....+..++.+...   ... .......+..+.+.++++.++.|+.+ ++.+..
T Consensus       174 v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~-~ct~~~  252 (314)
T KOG1444|consen  174 VYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSF-LCTRVN  252 (314)
T ss_pred             HHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH-HHHhhc
Confidence            99999876332 2367888888999988888887766411   011 11122335556777777777777775 899999


Q ss_pred             CceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895          177 GPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE  229 (275)
Q Consensus       177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~  229 (275)
                      +++..+++....-..+.+-+.++++++.++...+|..+-++|.+++.+.+.++
T Consensus       253 SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~  305 (314)
T KOG1444|consen  253 SATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRK  305 (314)
T ss_pred             cccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhh
Confidence            99999999988888888888888899999999999999999999998765443

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.85  E-value=1.5e-07  Score=84.02  Aligned_cols=135  Identities=18%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhCC-ccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHH
Q 046895           87 ALFALGSCFGYAIWLVIQAKMSEEYP-CQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLM  165 (275)
Q Consensus        87 ~~l~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  165 (275)
                      ..+.+.=-.+-..+....|...+..| | +.++.++++++.+++.+.......+.+... .....+..++.+|++... .
T Consensus        51 ~~~~~~wy~~s~~~~~~nK~vl~~~~~P-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~-~  127 (350)
T PTZ00343         51 ALLFLTWYALNVLYVVDNKLALNMLPLP-WTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLF-V  127 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCChh-HHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHH-H
Confidence            33333334444556788899988888 6 999999999998876554332111111111 012245556777775544 4


Q ss_pred             HHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          166 VTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       166 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      +...+.++++.+++.++++..++|++++++++++++|++++.++++++++++|+.+...
T Consensus       128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            66677999999999999999999999999999999999999999999999999998763

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.84  E-value=6.8e-08  Score=84.46  Aligned_cols=121  Identities=12%  Similarity=0.086  Sum_probs=94.3

Q ss_pred             HHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 046895           99 IWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRGP  178 (275)
Q Consensus        99 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~  178 (275)
                      .++++.|...++.+.++..+.+++.++.+...+.......+...   ....++..++.+|++ ..+.+.+.+.+++++++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~   91 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLK---ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAV   91 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccH
Confidence            34567788887756569999999988877665542111111111   113356667777876 47778999999999999


Q ss_pred             eehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895          179 LFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL  223 (275)
Q Consensus       179 ~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~  223 (275)
                      +.++++.++.|++++++++++++|+++..+++|.+++++|+++..
T Consensus        92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999998754

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.83  E-value=4.9e-08  Score=72.31  Aligned_cols=68  Identities=16%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             HHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          157 SGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       157 ~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      .+++..++++.++.+++++++.+++-.+.++.++++.+++++++||++++.+++|.+++++|++++..
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34456788999999999999999999999999999999999999999999999999999999988753

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.76  E-value=7.2e-07  Score=75.57  Aligned_cols=171  Identities=19%  Similarity=0.231  Sum_probs=116.2

Q ss_pred             HHHhccccccCcceee----hhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVL----GSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGY   97 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~----~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~   97 (275)
                      ++.++|+|.-+..+++    ++++.++|+++.+..+..                  ....++..+...|....+++.+.|
T Consensus        89 ~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~------------------~~~~~~~~~~~kgi~~Ll~stigy  150 (269)
T PF06800_consen   89 IGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK------------------SDKSSSKSNMKKGILALLISTIGY  150 (269)
T ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc------------------ccccccccchhhHHHHHHHHHHHH
Confidence            8899999999887754    777778888776542221                  011122345677999999999999


Q ss_pred             HHHHHHHHhhhhhCCccchHHHHHHHHHHHHH-HHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 046895           98 AIWLVIQAKMSEEYPCQFSSTALMCVMGAIQA-VVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTR  176 (275)
Q Consensus        98 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~  176 (275)
                      ..|.+..|..  +.++ +....-+. ++.++. .++..+..+..  +.   ...|. =+..|+ .-.++..++..+.+..
T Consensus       151 ~~Y~~~~~~~--~~~~-~~~~lPqa-iGm~i~a~i~~~~~~~~~--~~---k~~~~-nil~G~-~w~ignl~~~is~~~~  219 (269)
T PF06800_consen  151 WIYSVIPKAF--HVSG-WSAFLPQA-IGMLIGAFIFNLFSKKPF--FE---KKSWK-NILTGL-IWGIGNLFYLISAQKN  219 (269)
T ss_pred             HHHHHHHHhc--CCCh-hHhHHHHH-HHHHHHHHHHhhcccccc--cc---cchHH-hhHHHH-HHHHHHHHHHHhHHhc
Confidence            9999998763  3455 55444333 333332 22223222111  11   11122 244454 4567788899999999


Q ss_pred             CceehhhhhhHHHHHHHHHHHHHhcCccchh----hhhhHHHHHHHHHH
Q 046895          177 GPLFASIFNPLMLVVVAILSSLILDEKLHLG----SILGATLIVCGLYA  221 (275)
Q Consensus       177 ~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~----~~iG~~li~~G~~l  221 (275)
                      +.+..=.+..+..+++.+.+.++++|+=+..    .++|++++++|.++
T Consensus       220 G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  220 GVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             cchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999987765    46788888888765

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.71  E-value=6.4e-07  Score=77.13  Aligned_cols=143  Identities=21%  Similarity=0.218  Sum_probs=104.8

Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhh
Q 046895           82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVA  161 (275)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  161 (275)
                      ....+....+++++.|+......+.......+.......+.+.+.+...+.....  .....+..  ..+......+.+.
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~   79 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLE--PRGLRPAL--RPWLLLLLLALLG   79 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhh--cccccccc--cchHHHHHHHHHH
Confidence            3456788899999999999999998876523314444556666666522222211  11011111  1133356666778


Q ss_pred             hHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHH-HHhcCccchhhhhhHHHHHHHHHHhhhcccc
Q 046895          162 SGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSS-LILDEKLHLGSILGATLIVCGLYAVLWGKGK  228 (275)
Q Consensus       162 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~-li~~e~~s~~~~iG~~li~~G~~l~~~~~~~  228 (275)
                      ....+.+++.+++++++..++++.++.|+++.++++ ++++|++++.+++|..+.+.|++++.+....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            889999999999999999999999999999999997 7679999999999999999999998765443

>TIGR00803 nst UDP-galactose transporter

Probab=98.68  E-value=1.2e-07  Score=79.20  Aligned_cols=193  Identities=15%  Similarity=0.136  Sum_probs=110.1

Q ss_pred             HhccccccCcceeehhhhhhhhhhhhhhhcCcccccc--CCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           24 KLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIW--STNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        24 ~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      +...++|++..++++..+...|++.....+.......  ...-...+. +...+.....+..+.|....+.+.++-++..
T Consensus        23 ~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~-~~~~~~~~~~g~~~~g~~~~l~a~~~~~~~~  101 (222)
T TIGR00803        23 LLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQM-VQSSAKTLMFGNPVVGLSAVLSALLSSGFAG  101 (222)
T ss_pred             ccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeec-CCCCccccccccHHHHHHHHHHHHHHHhhhH
Confidence            5566777777777777777777765432221100000  000000000 0000001122356778888888888888888


Q ss_pred             HHHHhhhhhCCccchHHHHHH-HHHHHHHHHHHHHhccC-ccccc--hhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895          102 VIQAKMSEEYPCQFSSTALMC-VMGAIQAVVFALCMEKD-WSQWK--LGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG  177 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~  177 (275)
                      ++.++..++.+.........+ +++.+.........+.. ...+.  ...+...+   .. ++..+.+..+..+.+++.+
T Consensus       102 ~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~a~~~~~v~~vlk~~~  177 (222)
T TIGR00803       102 VYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW---IV-GLLNVGGGLCIGGVVRYAD  177 (222)
T ss_pred             HHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH---HH-HHHHHhcCceeeehhHHhH
Confidence            888887665433122212222 22222111111111111 11111  00111111   11 2244566777889999999


Q ss_pred             ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Q 046895          178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYA  221 (275)
Q Consensus       178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l  221 (275)
                      +...+....++++++.++++++++|+++..+++|+.+++.|+++
T Consensus       178 ~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       178 NTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            99999999999999999999999999999999999999998765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=3.8e-08  Score=81.98  Aligned_cols=188  Identities=14%  Similarity=0.077  Sum_probs=146.1

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      +.++++|+|-+.....++++.+.|-.+=+  | .                    .+..+.-.+.|.+++..|.++-|...
T Consensus       145 LtyvllkqkTs~~~~~~C~lIi~GF~lGv--d-q--------------------E~~~~~ls~~GvifGVlaSl~vAlna  201 (347)
T KOG1442|consen  145 LTYVLLKQKTSFFALGCCLLIILGFGLGV--D-Q--------------------EGSTGTLSWIGVIFGVLASLAVALNA  201 (347)
T ss_pred             hHHhhcccccccccceeehhheehheecc--c-c--------------------ccccCccchhhhHHHHHHHHHHHHHH
Confidence            88999999999999999888888866543  1 1                    11334567899999999999999999


Q ss_pred             HHHHhhhhhC-CccchHHHHHHHHHHHHHHHHHHHhccCcccc--chh-hhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895          102 VIQAKMSEEY-PCQFSSTALMCVMGAIQAVVFALCMEKDWSQW--KLG-WNIRLLTVAYSGIVASGLMVTLISWCVRTRG  177 (275)
Q Consensus       102 v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~  177 (275)
                      ++.|+..... +.-+..+.+..+.+.+..+|...+.+.-...+  +.. ....|..+.+.|+++.+++|... +=+|..+
T Consensus       202 iytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg-~QIK~TS  280 (347)
T KOG1442|consen  202 IYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG-WQIKVTS  280 (347)
T ss_pred             HhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheee-EEEEecc
Confidence            9999876543 33355788888999999999888766422222  222 33456666677777777776653 5678899


Q ss_pred             ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccccccc
Q 046895          178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMKKI  233 (275)
Q Consensus       178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~~~~  233 (275)
                      |...++-.....+.-.++++.+++|.-+..-|-+-+++++|..++.+.|..+.+++
T Consensus       281 plThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~  336 (347)
T KOG1442|consen  281 PLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA  336 (347)
T ss_pred             cceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999987765555443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.58  E-value=7.2e-07  Score=77.58  Aligned_cols=131  Identities=17%  Similarity=0.107  Sum_probs=94.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHH
Q 046895           86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLM  165 (275)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  165 (275)
                      |.+++++++++|+...+..|+.. ..++ .+..  +..++.++......+...+  ...  ....+..-...|+ .-+++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~-~~~~--~~~~g~l~~~~~~~~~~~~--~~~--~~~~~~~g~l~G~-~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPY-SQTL--GTTFGALILSIAIAIFVLP--EFW--ALSIFLVGLLSGA-FWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHH-HHHH--HHHHHHHHHHHHHHHHhCC--ccc--ccHHHHHHHHHHH-HHHhh
Confidence            67899999999999999999875 3333 3322  4555555555444443321  111  1111221222233 46788


Q ss_pred             HHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHHHhcCccchhh----hhhHHHHHHHHHHhhhc
Q 046895          166 VTLISWCVRTRGPLFASIFNP-LMLVVVAILSSLILDEKLHLGS----ILGATLIVCGLYAVLWG  225 (275)
Q Consensus       166 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~li~~e~~s~~~----~iG~~li~~G~~l~~~~  225 (275)
                      +.+|+.++++.+.+.+-.+.+ ++++++.++++++++|+.+..+    ++|.+++++|++++...
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            899999999999999988888 8999999999999999999999    99999999999987544

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.52  E-value=2.1e-06  Score=74.80  Aligned_cols=127  Identities=17%  Similarity=0.115  Sum_probs=97.0

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhh
Q 046895           83 RFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVAS  162 (275)
Q Consensus        83 ~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  162 (275)
                      ...|..+.++++++|+......|...++.++ ....++|++++++++.++......   .++   ...+...+..|++ .
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~-~~~~~~R~~~a~l~l~~~~~~~~~---~~~---~~~~~~~~~~g~~-~   81 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPLVGA-PGVTALRLALGTLILIAIFKPWRL---RFA---KEQRLPLLFYGVS-L   81 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHhHHhc---cCC---HHHHHHHHHHHHH-H
Confidence            3678999999999999999999999988888 899999999999887765432111   111   2334445566663 5


Q ss_pred             HHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895          163 GLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL  223 (275)
Q Consensus       163 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~  223 (275)
                      +..+.++++++++++++.++++.++.|+++.+++    +|++..  +.+..+.++|+.++.
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~  136 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLL  136 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheee
Confidence            6667888999999999999999999999998876    355544  455667788887765

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.44  E-value=4.4e-06  Score=62.34  Aligned_cols=68  Identities=25%  Similarity=0.382  Sum_probs=59.7

Q ss_pred             HhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          159 IVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       159 ~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      ++..+++++++..++++++.+.+=.+ ..+..+.+.+.++++++|++|+.+++|+.++++|++++....
T Consensus        37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            44667889999999999998887655 568999999999999999999999999999999999986544

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.36  E-value=1.2e-06  Score=69.74  Aligned_cols=178  Identities=14%  Similarity=0.142  Sum_probs=123.5

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++++.+|+|+...+.++.++++.|++++...|                        ....+.+.|...+..++...|.|-
T Consensus        96 La~IVL~D~~~~~kIlaailAI~GiVmiay~D------------------------N~~a~e~iGi~~AV~SA~~aAlYK  151 (290)
T KOG4314|consen   96 LAIIVLGDRFMGFKILAAILAIGGIVMIAYAD------------------------NEHADEIIGIACAVGSAFMAALYK  151 (290)
T ss_pred             HHHHHhccchhhhhHHHHHHHhCcEEEEEecc------------------------chhhhhhhhHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999997533                        233467899999999999999999


Q ss_pred             HHHHhhhhhCCccchHHHHHHHHH---HHHH-HHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895          102 VIQAKMSEEYPCQFSSTALMCVMG---AIQA-VVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG  177 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~~~~---~i~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~  177 (275)
                      +..|......+- -...-++...+   ..+. .+.....-..-.+|+......|..++..+.+..+. .++.+.++..+.
T Consensus       152 V~FK~~iGnAn~-Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~  229 (290)
T KOG4314|consen  152 VLFKMFIGNANF-GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSLAF-NFLINFGIALLN  229 (290)
T ss_pred             HHHHHHhccCcc-hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHHHH-hhheeehhhhhc
Confidence            999988764332 11111111111   1111 11111111112333322233466566665544333 445578899999


Q ss_pred             ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      |...++-+.....--+....++-+-..+.....|.+++..|.+++...
T Consensus       230 PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP  277 (290)
T KOG4314|consen  230 PILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP  277 (290)
T ss_pred             hhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence            999999999888888899988666677888999999999999887653

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.33  E-value=5.2e-06  Score=69.67  Aligned_cols=185  Identities=15%  Similarity=0.097  Sum_probs=127.0

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++.-+++++++.++|+|+....+|++++-..|-.               . ..++-.+......|+++.++|-+.-|.-.
T Consensus       129 fst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~---------------~-~~~p~~d~s~iitGdllIiiaqiivaiQ~  192 (372)
T KOG3912|consen  129 FSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH---------------L-VTDPYTDYSSIITGDLLIIIAQIIVAIQM  192 (372)
T ss_pred             HHHHHHhcccchhhHHHHHHHHhhhheeeeeecc---------------c-ccCCccccccchhhhHHHHHHHHHHHHHH
Confidence            6788999999999999999999999988532111               0 00111223466789999999999999999


Q ss_pred             HHHHhhhhhC--CccchHHHHHHHHHHHHHHHHHHHhc----c-CccccchhhhhhHHH---------HHHHHHhhhHHH
Q 046895          102 VIQAKMSEEY--PCQFSSTALMCVMGAIQAVVFALCME----K-DWSQWKLGWNIRLLT---------VAYSGIVASGLM  165 (275)
Q Consensus       102 v~~k~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~----~-~~~~~~~~~~~~~~~---------l~~~g~~~~~~~  165 (275)
                      ++-+|..++.  ++ .....|..+++.++...++....    + .++.-+...-.+|.-         .+++...+...+
T Consensus       193 v~Eek~l~~~nV~p-l~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vS  271 (372)
T KOG3912|consen  193 VCEEKQLKKSNVAP-LQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVS  271 (372)
T ss_pred             HHHHhhhhhccCCH-HHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhh
Confidence            9999888854  45 88899999998655444443221    1 111111000011110         112222222222


Q ss_pred             HHHHH----HHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895          166 VTLIS----WCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL  223 (275)
Q Consensus       166 ~~~~~----~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~  223 (275)
                      -.+++    ...+..+++.=.++-.+...+.=+++.....|.+...|+.|.++.+.|++++.
T Consensus       272 iAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  272 IAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             eeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222    45577889999999999999999999999999999999999999999999985

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.32  E-value=1.3e-05  Score=70.56  Aligned_cols=78  Identities=14%  Similarity=0.101  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          149 IRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       149 ~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      ..|+..+.+++ .=+.+.++.+.|+++++.+.+.++.....+++.+++++++++++++.+++|+++.+.|+.++.....
T Consensus        77 ~~~w~y~lla~-~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   77 RPWWKYFLLAL-LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             hhHHHHHHHHH-HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            44555677777 4568888899999999999999999999999999999999999999999999999999998876543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.26  E-value=1.9e-05  Score=58.14  Aligned_cols=68  Identities=19%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             HhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          159 IVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       159 ~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      ++..++++.++..++++++.+.+=.. ..+..+.+.++++++++|++++.+++|+.++++|+++.....
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44667889999999999998876544 668889999999999999999999999999999999986543

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.23  E-value=3.3e-06  Score=68.55  Aligned_cols=187  Identities=18%  Similarity=0.161  Sum_probs=133.7

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      .+..++|.|++-..+.+.++.++..+.-.-+|-.                  +. .-.......|+++....++.-+.+.
T Consensus       111 gEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q------------------~~-~~~~~~lN~GY~Wm~~NclssaafV  171 (309)
T COG5070         111 GEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ------------------AS-AFKAQILNPGYLWMFTNCLSSAAFV  171 (309)
T ss_pred             hHHHHhcCccchhhHHHHHHHHHHHHHhccchhh------------------HH-HHHhcccCCceEEEehhhHhHHHHH
Confidence            6778899999988888877666555443211100                  00 0011244568999999999999999


Q ss_pred             HHHHhhhhhC--CccchHHHHHHHHHHHHHHHHHHHhccCccc-cc-hhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895          102 VIQAKMSEEY--PCQFSSTALMCVMGAIQAVVFALCMEKDWSQ-WK-LGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG  177 (275)
Q Consensus       102 v~~k~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~  177 (275)
                      ...|+..+-.  .. ...+++..+.+..+++.+.++.+...+. .. ..+.....++...|+.+.+++|. ..|.++..+
T Consensus       172 L~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~-saWcvrVtS  249 (309)
T COG5070         172 LIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYC-SAWCVRVTS  249 (309)
T ss_pred             HHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhc-cceeEeehh
Confidence            9999876632  34 6678999999999998888877643221 01 11111233456666655555444 469999999


Q ss_pred             ceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895          178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE  229 (275)
Q Consensus       178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~  229 (275)
                      ++..+.+..++..-.++.|.++++|+.+...+..+.+.....+++...+.++
T Consensus       250 STtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k  301 (309)
T COG5070         250 STTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK  301 (309)
T ss_pred             hhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888877655443

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.20  E-value=7.5e-06  Score=71.31  Aligned_cols=68  Identities=12%  Similarity=0.153  Sum_probs=47.5

Q ss_pred             HhhhHHHHHHHHHHHhcCCceehhhhhhH-HHHHHHHHHHHHhcCc--cchh----hhhhHHHHHHHHHHhhhcc
Q 046895          159 IVASGLMVTLISWCVRTRGPLFASIFNPL-MLVVVAILSSLILDEK--LHLG----SILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       159 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~-~pv~~~i~~~li~~e~--~s~~----~~iG~~li~~G~~l~~~~~  226 (275)
                      +.+........++++++.+++.+..+.+. -..++++-+.++++|.  ++..    ...|+.+++.|+++....+
T Consensus       220 v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~  294 (300)
T PF05653_consen  220 VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK  294 (300)
T ss_pred             HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence            33555666677899999999988876665 4556666677778874  4443    4667788888888876544

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.14  E-value=6e-05  Score=65.96  Aligned_cols=127  Identities=16%  Similarity=0.075  Sum_probs=91.9

Q ss_pred             HHHHHHHHhhhhhCCc---cchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHh
Q 046895           98 AIWLVIQAKMSEEYPC---QFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVR  174 (275)
Q Consensus        98 a~~~v~~k~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~  174 (275)
                      ..+.+++++..++...   +..+++.++...++...+.......+..  +..   .+...+..++ ...++..+-+.+++
T Consensus        13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~-~~~~~~~~~~~al~   86 (303)
T PF08449_consen   13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS--RKI---PLKKYAILSF-LFFLASVLSNAALK   86 (303)
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC--CcC---hHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            3355666666654332   2567777777777777766554441111  111   1222344454 55677788899999


Q ss_pred             cCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcccccc
Q 046895          175 TRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEM  230 (275)
Q Consensus       175 ~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~  230 (275)
                      +++.....++-...|+.+.++++++++++.+..++++.+++.+|+++....+.+..
T Consensus        87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~  142 (303)
T PF08449_consen   87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS  142 (303)
T ss_pred             hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence            99999999999999999999999999999999999999999999999876554433

; GO: 0055085 transmembrane transport

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.09  E-value=2.2e-05  Score=68.44  Aligned_cols=120  Identities=22%  Similarity=0.172  Sum_probs=90.3

Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhh
Q 046895           82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVA  161 (275)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  161 (275)
                      ++..|.++++.++++.+....++|+...+.+. -...                   ......+....+.|    +.|++.
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~-------------------~~~~~~~~l~~~~W----~~G~~~   59 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLR-------------------AGSGGRSYLRRPLW----WIGLLL   59 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccc-------------------ccchhhHHHhhHHH----HHHHHH
Confidence            67789999999999999999999998765443 1100                   00000111111212    233444


Q ss_pred             hHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          162 SGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       162 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      ..++..+.+.++...+.+.++.+..+.-++..+++..+++|+++...++|+++++.|..+....
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            4566778888999999999999999999999999999999999999999999999999876543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.04  E-value=1.3e-06  Score=72.79  Aligned_cols=138  Identities=14%  Similarity=0.078  Sum_probs=94.5

Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhh
Q 046895           82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVA  161 (275)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  161 (275)
                      ....|..+..++ ..+....+..++... .++ +.....+++.-.++..+..+......  +......-|  +++=|++ 
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e-~~p-~e~a~~r~l~~mlit~pcliy~~~~v--~gp~g~R~~--LiLRg~m-  106 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLE-NDP-MELASFRLLVRMLITYPCLIYYMQPV--IGPEGKRKW--LILRGFM-  106 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhc-cCh-hHhhhhhhhhehhhhheEEEEEeeee--ecCCCcEEE--EEeehhh-
Confidence            456788888888 666666777776653 444 56666664443333333222221111  111111112  2333443 


Q ss_pred             hHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          162 SGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       162 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      ...+..+.+|++++++-+.+.++..+.|+++++++|++++|+.|....+|..+.+.|+++..+...
T Consensus       107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF  172 (346)
T KOG4510|consen  107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF  172 (346)
T ss_pred             hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence            345667778999999999999999999999999999999999999999999999999999876553

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=98.03  E-value=0.00013  Score=53.61  Aligned_cols=64  Identities=13%  Similarity=0.207  Sum_probs=56.4

Q ss_pred             hhhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895          160 VASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL  223 (275)
Q Consensus       160 ~~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~  223 (275)
                      +...+++.+...++|++|.+.+ ++...+..+.+.+.++++++|++++.+++|+.+++.|++...
T Consensus        43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3567889999999999988765 566678889999999999999999999999999999999864

>PRK11431 multidrug efflux system protein; Provisional

Probab=98.01  E-value=0.00011  Score=53.67  Aligned_cols=66  Identities=21%  Similarity=0.331  Sum_probs=58.0

Q ss_pred             HhhhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          159 IVASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       159 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      ++..++++.+...++|+++.+.+ ++...+..+.+.+.++++++|++++.+++|+.++++|++..+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            34667889999999999988765 6667788999999999999999999999999999999998754

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.99  E-value=9.9e-05  Score=53.40  Aligned_cols=65  Identities=29%  Similarity=0.425  Sum_probs=58.1

Q ss_pred             hhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          161 ASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       161 ~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      ....+|.+...++|+++.+.+ ++....-.+.+.+.++++++|++++.+++|..++++|++.....
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            557889999999999987764 77888899999999999999999999999999999999988654

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.88  E-value=0.00045  Score=53.16  Aligned_cols=132  Identities=14%  Similarity=0.150  Sum_probs=97.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHH
Q 046895           86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLM  165 (275)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  165 (275)
                      ..+++++++++-+....+..++.++..+++....+.+..+++.+....++.++.  .........|+. ..-|+ ..+..
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~-~lGG~-lG~~~   77 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWA-YLGGL-LGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHH-hccHH-HHHHH
Confidence            357889999999999999999988877339999999999999998888877653  222222223442 33444 45566


Q ss_pred             HHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHH----HhcCccchhhhhhHHHHHHHHHH
Q 046895          166 VTLISWCVRTRGPLFASIFNP-LMLVVVAILSSL----ILDEKLHLGSILGATLIVCGLYA  221 (275)
Q Consensus       166 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~l----i~~e~~s~~~~iG~~li~~G~~l  221 (275)
                      ..+..+.+++++++....+.. -+-+.+.+++.+    .-++++++.+++|.+++++|+++
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            677778889998887766554 456666777775    34578899999999999999874

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.84  E-value=0.00017  Score=51.51  Aligned_cols=57  Identities=26%  Similarity=0.401  Sum_probs=36.0

Q ss_pred             HhhhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHH
Q 046895          159 IVASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDEKLHLGSILGATLI  215 (275)
Q Consensus       159 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li  215 (275)
                      +...++++.++..++++++.+.+ .+...+..+.+.+.++++++|++|+.+++|+.+|
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            34667889999999999999998 5556799999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.76  E-value=0.00013  Score=61.71  Aligned_cols=77  Identities=18%  Similarity=0.239  Sum_probs=67.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895          152 LTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE  229 (275)
Q Consensus       152 ~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~  229 (275)
                      +.+..-++ ...+...+.+.++++++|+...++..+..++++++++++++++++..||++..+.++|+.++.......
T Consensus        18 ~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   18 LKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            33444455 567788888999999999999999999999999999999999999999999999999999987765444

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.76  E-value=0.0025  Score=56.34  Aligned_cols=187  Identities=15%  Similarity=0.101  Sum_probs=105.0

Q ss_pred             HHHhcccccc---C----cceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccC-CCCcchhhHhHHHHHH
Q 046895           22 LEKLGIRTRA---G----KAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLH-ADPGKRFLGALFALGS   93 (275)
Q Consensus        22 l~~~~~~e~~---s----~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~l~l~a   93 (275)
                      +..++++|-.   +    ..-.+|+++.++|+++......-              .++....+ ++......|.++++++
T Consensus       117 ~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~--------------k~~~~~~~~~~~~~~~KGi~ialis  182 (345)
T PRK13499        117 MPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL--------------KERKMGIKKAEEFNLKKGLILAVMS  182 (345)
T ss_pred             HHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh--------------cccccccccccccchHhHHHHHHHH
Confidence            5677777543   2    33577888888999988651110              00000000 2234678899999999


Q ss_pred             HHHHHHHH-------HHHHhhhh-hCCccchHHHHHHH---HHHHHHHHH-HHH---hccCcc---ccchhh---hhhHH
Q 046895           94 CFGYAIWL-------VIQAKMSE-EYPCQFSSTALMCV---MGAIQAVVF-ALC---MEKDWS---QWKLGW---NIRLL  152 (275)
Q Consensus        94 ~~~~a~~~-------v~~k~~~~-~~~~~~~~~~~~~~---~~~i~~~~~-~~~---~~~~~~---~~~~~~---~~~~~  152 (275)
                      .+.+++|+       ...+.... ..++ .....-++.   .+.++.-.. ...   ..++.+   ......   ....+
T Consensus       183 gi~~~~f~~~~~~~~~~~~~a~~~g~~~-~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l  261 (345)
T PRK13499        183 GIFSACFSFAMDAGKPMHEAAAALGVDP-LYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVL  261 (345)
T ss_pred             HHHHHHHHHHHhhccchhhhhhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHH
Confidence            99999999       44433211 2233 322222222   333333222 121   111111   111100   11222


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCceehh----hhhhHHHHHHHHHHHHHhcCccc------hhhhhhHHHHHHHHHHh
Q 046895          153 TVAYSGIVASGLMVTLISWCVRTRGPLFAS----IFNPLMLVVVAILSSLILDEKLH------LGSILGATLIVCGLYAV  222 (275)
Q Consensus       153 ~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s----~~~~~~pv~~~i~~~li~~e~~s------~~~~iG~~li~~G~~l~  222 (275)
                      ...+.|+ .-.+++++|..+-+..+.....    +.+.+..+++.+++. +++|.=+      ..-++|++++++|.++.
T Consensus       262 ~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~li  339 (345)
T PRK13499        262 LSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIV  339 (345)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHH
Confidence            2233343 4566777788887777554333    444777799999998 5999766      56799999999999987


Q ss_pred             hhc
Q 046895          223 LWG  225 (275)
Q Consensus       223 ~~~  225 (275)
                      ...
T Consensus       340 g~~  342 (345)
T PRK13499        340 GLG  342 (345)
T ss_pred             hhc
Confidence            654

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.75  E-value=0.00083  Score=51.87  Aligned_cols=139  Identities=14%  Similarity=0.142  Sum_probs=94.3

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhH
Q 046895           84 FLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASG  163 (275)
Q Consensus        84 ~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  163 (275)
                      .+..++++.++++-....-...++.+..+++.....+.+..+++.+....++..+. +.+.......|| ...-|+ ..+
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pwW-~~~GG~-lGa   80 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPWW-AWIGGL-LGA   80 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCchH-HHHccc-hhh
Confidence            35678899999999999988888888777558888999999998888888774432 233322233344 233344 333


Q ss_pred             HHHHHHHHHHhcCCcee-hhhhhhHHHHHHHHHHHHHhc----CccchhhhhhHHHHHHHHHHhhhc
Q 046895          164 LMVTLISWCVRTRGPLF-ASIFNPLMLVVVAILSSLILD----EKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       164 ~~~~~~~~a~~~~~~~~-~s~~~~~~pv~~~i~~~li~~----e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      +--+.-.....+++++. ..+...-+-+.+.+++.+=+.    .++++..++|.+++++|+++..+.
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence            33344445556665544 445556677777777766544    678999999999999996665543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.41  E-value=0.0025  Score=56.40  Aligned_cols=137  Identities=15%  Similarity=0.112  Sum_probs=89.8

Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHH-----hccCc-cccchhhhhhHHHHH
Q 046895           82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALC-----MEKDW-SQWKLGWNIRLLTVA  155 (275)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~~~~~~~~~~~~~l~  155 (275)
                      +...|+++.+++++||+.+.+-.|+ .+..+  ++.. |- ..+. +...+..+     ..+.+ +.....+...+..-+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence            4568999999999999999999998 34433  3322 32 2222 22222221     11111 111112223344444


Q ss_pred             HHHHhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCcc---c----hhhhhhHHHHHHHHHHhhhc
Q 046895          156 YSGIVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKL---H----LGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       156 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~---s----~~~~iG~~li~~G~~l~~~~  225 (275)
                      +.|+ .=.+++..+..++++++.+....+ ..++-+.+.+++.+++||-.   +    ..-.+|.+++++|+++..+.
T Consensus        78 l~G~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         78 LFGA-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHH-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            4555 457889999999999998887654 56788889999999999754   2    23578999999999998773

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.40  E-value=0.0022  Score=54.59  Aligned_cols=81  Identities=16%  Similarity=0.101  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhh-hHHHHHHHHHHHHHhcCccchhhhh----hHHHHHHHHHHhhh
Q 046895          150 RLLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFN-PLMLVVVAILSSLILDEKLHLGSIL----GATLIVCGLYAVLW  224 (275)
Q Consensus       150 ~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~-~~~pv~~~i~~~li~~e~~s~~~~i----G~~li~~G~~l~~~  224 (275)
                      .++.-++.|+ .=.+++...+.+.++++.+++..+. .++-+.+.++++++|||.-+..+++    +.+++++|+++..+
T Consensus        44 ~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   44 SFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            3454555666 5578999999999999999999887 5666778889999999988877644    77888899999887


Q ss_pred             ccccccc
Q 046895          225 GKGKEMK  231 (275)
Q Consensus       225 ~~~~~~~  231 (275)
                      .++++.+
T Consensus       123 ~~~~~~~  129 (269)
T PF06800_consen  123 QDKKSDK  129 (269)
T ss_pred             ccccccc
Confidence            6655543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.29  E-value=0.0018  Score=47.67  Aligned_cols=110  Identities=15%  Similarity=0.031  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHH
Q 046895           91 LGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLIS  170 (275)
Q Consensus        91 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  170 (275)
                      ++.+++|++.+.+.|+..+..++ ..-.. +..-....     ++     ..|.      +    ...+.....+...|+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~~~~-~~~~~-~~~~~~~~-----Ll-----~n~~------y----~ipf~lNq~GSv~f~   59 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSGLEK-VKASL-QLLQEIKF-----LL-----LNPK------Y----IIPFLLNQSGSVLFF   59 (113)
T ss_pred             eeehHHhcCchHHHHHHHhhcCC-ccchH-HHHHHHHH-----HH-----HhHH------H----HHHHHHHHHHHHHHH
Confidence            34578999999999999887665 33221 21111111     10     0111      1    113344556678889


Q ss_pred             HHHhcCCceehhhhh-hHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895          171 WCVRTRGPLFASIFN-PLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAV  222 (275)
Q Consensus       171 ~a~~~~~~~~~s~~~-~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~  222 (275)
                      +.+++.+-+.+..+. .+.=+++++.++++.+|..++..++|+++++.|+.+.
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            999999999999984 8999999999988777787888999999999998764

Many members are annotated as potential transmembrane proteins.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.0018  Score=55.80  Aligned_cols=185  Identities=12%  Similarity=0.126  Sum_probs=96.0

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWL  101 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~  101 (275)
                      ++..++||++++...+|+.++++|..+++.....+... ....++.+        -..+.. .+.+...+..  ...+-.
T Consensus       107 la~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i-~t~~el~~--------~~~~~~-Fliy~~~iil--~~~il~  174 (335)
T KOG2922|consen  107 LASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI-ESVEEVWE--------LATEPG-FLVYVIIIIL--IVLILI  174 (335)
T ss_pred             HHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc-ccHHHHHH--------HhcCcc-HHHHHHHHHH--HHHHHh
Confidence            89999999999999999999999999997543211100 00000000        000011 1111111111  112222


Q ss_pred             HHHHhhhhhCCccchHHHHHHHHHHHHHHHHH----------HHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHH
Q 046895          102 VIQAKMSEEYPCQFSSTALMCVMGAIQAVVFA----------LCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISW  171 (275)
Q Consensus       102 v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  171 (275)
                      ...+..   ... ..+..+..+++.+.+.-+.          ....+.   .....+..|..++.+.. +........++
T Consensus       175 ~~~~p~---~g~-tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~---~ql~~~~ty~~~l~~~~-~~~~Q~~yLNk  246 (335)
T KOG2922|consen  175 FFYAPR---YGQ-TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN---NQLFYPLTWIFLLVVAT-CVSTQMNYLNK  246 (335)
T ss_pred             eeeccc---ccc-cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC---cccccHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            222221   111 1223333333333211111          111111   11112233554444443 44555566689


Q ss_pred             HHhcCCceehhhhhhH-HHHHHHHHHHHHhcCcc--chh----hhhhHHHHHHHHHHhhhcc
Q 046895          172 CVRTRGPLFASIFNPL-MLVVVAILSSLILDEKL--HLG----SILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       172 a~~~~~~~~~s~~~~~-~pv~~~i~~~li~~e~~--s~~----~~iG~~li~~G~~l~~~~~  226 (275)
                      |++.-+++.++.+.|+ -..++++-+.++++|--  +..    ...|+..++.|++++...|
T Consensus       247 AL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~k  308 (335)
T KOG2922|consen  247 ALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTK  308 (335)
T ss_pred             HHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeec
Confidence            9999999988887765 45667778888888743  333    4678888889988885443

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=97.12  E-value=0.035  Score=48.72  Aligned_cols=138  Identities=17%  Similarity=0.080  Sum_probs=95.8

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhhhCCcc---chHHHHHHHHHHHHHHHHHHHhccC----c----cccchhhhhhHHH
Q 046895           85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQ---FSSTALMCVMGAIQAVVFALCMEKD----W----SQWKLGWNIRLLT  153 (275)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~----~----~~~~~~~~~~~~~  153 (275)
                      .=++..+...+.++......|+..++.++.   .+..+..-+.-.+++..+.+...+.    .    ..+......+.+.
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            445666777778888888888776644221   3344444455666666666554311    0    1111111112222


Q ss_pred             HHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895          154 VAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL  223 (275)
Q Consensus       154 l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~  223 (275)
                      +..-++ ..++...+++.++.+.+|+...+...+..+-++++.++++++++++.||...++...|+.+++
T Consensus        95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            333333 456666788999999999999999999999999999999999999999999999999999998

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.91  E-value=0.0035  Score=53.06  Aligned_cols=131  Identities=13%  Similarity=0.070  Sum_probs=75.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccC-ccccchhhhhhHHHHHHHHHhhhHH
Q 046895           86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKD-WSQWKLGWNIRLLTVAYSGIVASGL  164 (275)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~  164 (275)
                      |++.++.|+++++.+.+=.|+.- ..|. +...++++....+...++.++.+.+ +.++.           .+|-..-+.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~-~gDg-~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~a-----------mlgG~lW~~   67 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD-TGDG-FFFQWVMCSGIFLVGLVVNLILGFPPFYPWA-----------MLGGALWAT   67 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc-CCCc-HHHHHHHHHHHHHHHHHHHHhcCCCcceeHH-----------Hhhhhhhhc
Confidence            57889999999999999999874 4566 6666666666666666555554321 11111           111112223


Q ss_pred             HHHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHH-HhcC---cc--chhhhhhHHHHHHHHHHhhhccccc
Q 046895          165 MVTLISWCVRTRGPLFASIFNP-LMLVVVAILSSL-ILDE---KL--HLGSILGATLIVCGLYAVLWGKGKE  229 (275)
Q Consensus       165 ~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~l-i~~e---~~--s~~~~iG~~li~~G~~l~~~~~~~~  229 (275)
                      +..+-.-+++.++....-++=. .+-+.+-..+-+ ++|+   .+  .+..++|++++++|..++...|.+.
T Consensus        68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            3333344555555444333222 233444444332 3443   22  5668999999999999887655444

The region concerned is approximately 280 residues long.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.62  E-value=0.0021  Score=56.19  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             HHHHHHhhhh--hCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895          100 WLVIQAKMSE--EYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG  177 (275)
Q Consensus       100 ~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~  177 (275)
                      ..++.|+...  ..+-++..+..++.++.+.....-.+...+...  ......+..++-+|+ ...++.++-+.++++.+
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~--~~~~~~~~~llpl~~-~~~~~~v~~n~Sl~~v~  108 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK--ISSKLPLRTLLPLGL-VFCISHVLGNVSLSYVP  108 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc--cccccchHHHHHHHH-HHHHHHHhcchhhhccc
Confidence            4555677777  556557777776666666655554443322211  112234555677776 45677888899999999


Q ss_pred             ceehhhhhhHHHHHHHHHHHHHhcCccchhhh
Q 046895          178 PLFASIFNPLMLVVVAILSSLILDEKLHLGSI  209 (275)
Q Consensus       178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~  209 (275)
                      .+.+-.+-.++|+++.++++++.+|+.++..+
T Consensus       109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~  140 (316)
T KOG1441|consen  109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTY  140 (316)
T ss_pred             hhHHHHHHhhcchhHHHHHHHHhCCCCcceEE
Confidence            99999999999999999999999999887533

>COG2510 Predicted membrane protein [Function unknown]

Probab=96.35  E-value=0.0012  Score=49.23  Aligned_cols=45  Identities=24%  Similarity=0.341  Sum_probs=40.4

Q ss_pred             ccHHHHHHHHHHHHHh--------------------------------HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895            6 LNLKILFQAFLCGLFG--------------------------------LEKLGIRTRAGKAKVLGSLIGIGGAMILT   50 (275)
Q Consensus         6 ~~~~~~~~~~~~g~~g--------------------------------l~~~~~~e~~s~~~~~~~~l~~~Gv~li~   50 (275)
                      ++.|.|+.+.+.|+.+                                ++++++|||+|..+++|+.+..+|+++++
T Consensus        62 ~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          62 IGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             cCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            5778888888888776                                99999999999999999999999999875

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.13  E-value=0.0014  Score=54.36  Aligned_cols=175  Identities=15%  Similarity=0.158  Sum_probs=108.0

Q ss_pred             HHHhccccccCccee----ehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHH
Q 046895           22 LEKLGIRTRAGKAKV----LGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGY   97 (275)
Q Consensus        22 l~~~~~~e~~s~~~~----~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~   97 (275)
                      .+.+.++|..+..+.    +++++.++|+.+-+..+..                  ...+++....-.|....+.+.+.|
T Consensus       103 ~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~------------------nk~~~~~~n~kkgi~~L~iSt~GY  164 (288)
T COG4975         103 FGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN------------------NKEEENPSNLKKGIVILLISTLGY  164 (288)
T ss_pred             eeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc------------------cccccChHhhhhheeeeeeeccce
Confidence            778899998877663    4555666666655422111                  011122334567888999999999


Q ss_pred             HHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 046895           98 AIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGLMVTLISWCVRTRG  177 (275)
Q Consensus        98 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~  177 (275)
                      -.|.++.+...  .+. .. ...-..++.+++....-....+.   ..  +...+.-..-|+ .-+.+...+..+.+..+
T Consensus       165 v~yvvl~~~f~--v~g-~s-aiLPqAiGMv~~ali~~~~~~~~---~~--~K~t~~nii~G~-~Wa~GNl~ml~a~~~~G  234 (288)
T COG4975         165 VGYVVLFQLFD--VDG-LS-AILPQAIGMVIGALILGFFKMEK---RF--NKYTWLNIIPGL-IWAIGNLFMLLAAQKVG  234 (288)
T ss_pred             eeeEeeecccc--ccc-hh-hhhHHHHHHHHHHHHHhhccccc---ch--HHHHHHHHhhHH-HHHhhHHHHHHhhhhhc
Confidence            99999987654  332 22 12222233333332222222111   11  111121344455 34567777888888888


Q ss_pred             ceehhhhhhHHHHHHHHHHHHHhcCccchhh----hhhHHHHHHHHHHhhh
Q 046895          178 PLFASIFNPLMLVVVAILSSLILDEKLHLGS----ILGATLIVCGLYAVLW  224 (275)
Q Consensus       178 ~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~----~iG~~li~~G~~l~~~  224 (275)
                      ....=.+..+.-+++.+-+.++++|+=|..+    ++|.+++++|.++...
T Consensus       235 vAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~  285 (288)
T COG4975         235 VATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             eeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence            8887778888888999999999999988775    6788888888777643

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.09  E-value=0.013  Score=48.37  Aligned_cols=136  Identities=16%  Similarity=0.132  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhh-hCC--c--------cchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHH
Q 046895           90 ALGSCFGYAIWLVIQAKMSE-EYP--C--------QFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSG  158 (275)
Q Consensus        90 ~l~a~~~~a~~~v~~k~~~~-~~~--~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  158 (275)
                      +..--+||=.|.+.+.++.+ ++.  .        ...+.++++.+-.++.=++..+...    ........+. ...+.
T Consensus        18 a~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~----~~~D~t~~~~-YaAcs   92 (337)
T KOG1580|consen   18 AGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK----TEIDNTPTKM-YAACS   92 (337)
T ss_pred             ecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc----ccccCCcchH-HHHHH
Confidence            33344678888888888765 222  1        1123344444444433322222211    1122222333 34444


Q ss_pred             HhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccccc
Q 046895          159 IVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKEMK  231 (275)
Q Consensus       159 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~~~  231 (275)
                      + +..++++..+.++++++=-..-+--+..|+-..++|+++.+.+.+|....-..+|++|+.++.+.+.|...
T Consensus        93 ~-sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g  164 (337)
T KOG1580|consen   93 A-SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG  164 (337)
T ss_pred             H-HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence            4 78889999999999999888888889999999999999999999999999999999999999887555443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.03  E-value=0.0034  Score=52.15  Aligned_cols=133  Identities=16%  Similarity=0.130  Sum_probs=86.3

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHHhhhHH
Q 046895           85 LGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGIVASGL  164 (275)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  164 (275)
                      .+++++++=++.|+.......+..  ..| .+-+. -+.++++......++...+...     ...+..-+..|+ .=.+
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~G--G~p-~qQ~l-GtT~GALifaiiv~~~~~p~~T-----~~~~iv~~isG~-~Ws~   71 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKFG--GKP-YQQTL-GTTLGALIFAIIVFLFVSPELT-----LTIFIVGFISGA-FWSF   71 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeecC--CCh-hHhhh-hccHHHHHHHHHHheeecCccc-----hhhHHHHHHhhh-Hhhh
Confidence            357899999999999888877653  334 33233 3334444433333333222111     122332334444 3357


Q ss_pred             HHHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHHHhcCccchhhh----hhHHHHHHHHHHhhhccc
Q 046895          165 MVTLISWCVRTRGPLFASIFNP-LMLVVVAILSSLILDEKLHLGSI----LGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       165 ~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~li~~e~~s~~~~----iG~~li~~G~~l~~~~~~  227 (275)
                      ++...+.++++++.+++..+.. .+-+-+.+++++.++|..+..+.    ++.++++.|+++..+.++
T Consensus        72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            8899999999999999998764 56677789999999999988873    455667777777665443

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=95.73  E-value=0.0041  Score=45.99  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF   51 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~   51 (275)
                      ++++++|||++++++++++++++|++++..
T Consensus        77 l~~~~~~er~~~~~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   77 LSWLFFKERLSPRRWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999974

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.68  E-value=0.0087  Score=52.70  Aligned_cols=67  Identities=15%  Similarity=0.170  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccccc
Q 046895          163 GLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGKE  229 (275)
Q Consensus       163 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~~  229 (275)
                      .++...++.++.+.+.+..+++....-+|+..++.++-+|++|+.+.++.++-++|++++...+.++
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            5678888999999999999999999999999999999999999999999999999999998765544

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.0045  Score=53.38  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=93.3

Q ss_pred             CcchhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccchhhhhhHHHHHHHHH
Q 046895           80 PGKRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLTVAYSGI  159 (275)
Q Consensus        80 ~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  159 (275)
                      ..++..|.++++.+.+..+...++.|+..++...    ...|              .+.  ...+.....    +.+.|+
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~~r--------------a~~--gg~~yl~~~----~Ww~G~   71 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SGLR--------------AGE--GGYGYLKEP----LWWAGM   71 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hccc--------------ccC--CCcchhhhH----HHHHHH
Confidence            4577889999999999999999999987665332    0100              011  111111111    234466


Q ss_pred             hhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          160 VASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       160 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      +..+++-..-+.+....+++.++.+..+..++.++++..+++|++++.-.+|+++.++|..+.....
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence            6667777888888888999999999999999999999999999999999999999999998876543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.40  E-value=0.54  Score=40.86  Aligned_cols=120  Identities=13%  Similarity=0.153  Sum_probs=79.5

Q ss_pred             HHHHHHHhhhhhCCccchHHH--HHHHHHHHHHHHHHHHhccCccccchhhhhhHHH--HHHHHHhhhHHHHHHHHHHHh
Q 046895           99 IWLVIQAKMSEEYPCQFSSTA--LMCVMGAIQAVVFALCMEKDWSQWKLGWNIRLLT--VAYSGIVASGLMVTLISWCVR  174 (275)
Q Consensus        99 ~~~v~~k~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~g~~~~~~~~~~~~~a~~  174 (275)
                      ...+..|.....++-++....  .|.+.+.+.....-..---+.++..+.....|+.  +++.+      ....-.++++
T Consensus        26 lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~------~i~t~~~slk   99 (314)
T KOG1444|consen   26 LMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVG------MLFTGSKSLK   99 (314)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHH------HHHHcccccc
Confidence            345555666555543344333  7777666665554443222233333333333433  22222      1233358899


Q ss_pred             cCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          175 TRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       175 ~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      +++.....++-...|+++++...++++.+++...|.....+++|......
T Consensus       100 ~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~  149 (314)
T KOG1444|consen  100 YLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF  149 (314)
T ss_pred             ccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999887654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=95.30  E-value=0.71  Score=38.91  Aligned_cols=102  Identities=17%  Similarity=0.050  Sum_probs=77.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCccccch-hhhhhHHHHHHHHHhhhHH
Q 046895           86 GALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWSQWKL-GWNIRLLTVAYSGIVASGL  164 (275)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~  164 (275)
                      -....+.++++--...-+.|.+-...++ ..++.+|..+++++++.+.=       +|.. .+..+|..++..|+ +.+.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~-~g~t~lRl~~aaLIll~l~R-------Pwr~r~~~~~~~~~~~yGv-sLg~   83 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGA-AGVTALRLAIAALILLALFR-------PWRRRLSKPQRLALLAYGV-SLGG   83 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccCh-hhHHHHHHHHHHHHHHHHhh-------HHHhccChhhhHHHHHHHH-HHHH
Confidence            5778888888888888888988888887 88899999888877665321       1221 12345777788887 5556


Q ss_pred             HHHHHHHHHhcCCceehhhhhhHHHHHHHHHH
Q 046895          165 MVTLISWCVRTRGPLFASIFNPLMLVVVAILS  196 (275)
Q Consensus       165 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~  196 (275)
                      -..++|.++++++-..+-.+-.+-|+...+++
T Consensus        84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~  115 (292)
T COG5006          84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLS  115 (292)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence            67788899999999999999999998766543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.15  E-value=0.015  Score=46.83  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          165 MVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       165 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      +.+.|..+++.++++.++.+...+..|..+++++.+++++...+++..++.+.|++++.+..
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D  127 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD  127 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence            35778899999999999999999999999999999999999999999999999999887543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=94.98  E-value=0.013  Score=43.33  Aligned_cols=29  Identities=21%  Similarity=0.343  Sum_probs=27.4

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT   50 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~   50 (275)
                      ++++++||++++++++|++++++|+++++
T Consensus        97 ~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   97 LGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999874

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=94.97  E-value=0.7  Score=40.69  Aligned_cols=178  Identities=16%  Similarity=0.106  Sum_probs=100.5

Q ss_pred             ccCcceeehhhhhhhhhhhhhhhcCccccccCCccccccCCCcccccCCCCcchhhHhHHHHHHHHHHHHHHHHHHhhhh
Q 046895           30 RAGKAKVLGSLIGIGGAMILTFYRGVEINIWSTNINLIHSNGHVASLHADPGKRFLGALFALGSCFGYAIWLVIQAKMSE  109 (275)
Q Consensus        30 ~~s~~~~~~~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~  109 (275)
                      +-....++|++++++|+.++.....-..              +....+....+...|.++++++.+.-|+.+.-......
T Consensus       132 ~~g~~vL~Gv~v~LiGIai~g~AG~~Ke--------------~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~p  197 (344)
T PF06379_consen  132 PSGQIVLLGVAVCLIGIAICGKAGSMKE--------------KELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKP  197 (344)
T ss_pred             CCchhhhhHHHHHHHHHHHHhHHHHhhh--------------hhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3345678999999999999864321100              00011123345678999999999999988876642211


Q ss_pred             -------h-CCccch----HHHHHHHHHHHHHHHHHHHhc---cCccc---cc--hh-hhhhHHHHHHHHHhhhHHHHHH
Q 046895          110 -------E-YPCQFS----STALMCVMGAIQAVVFALCME---KDWSQ---WK--LG-WNIRLLTVAYSGIVASGLMVTL  168 (275)
Q Consensus       110 -------~-~~~~~~----~~~~~~~~~~i~~~~~~~~~~---~~~~~---~~--~~-~~~~~~~l~~~g~~~~~~~~~~  168 (275)
                             . .++ ..    .....+.-+.+.-...++...   ++.+.   ..  .+ -...++..++.|++ =...+++
T Consensus       198 i~~~a~a~G~~~-l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfff  275 (344)
T PF06379_consen  198 IHEAAVAAGVNP-LYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFF  275 (344)
T ss_pred             HHHHHHHcCCCc-HHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHH
Confidence                   1 111 11    122223333444444444321   22211   11  01 11334434444543 3455666


Q ss_pred             HHHHHhcCCc----eehhhhhhHHHHHHHHHHHHHhcC------ccchhhhhhHHHHHHHHHHhhh
Q 046895          169 ISWCVRTRGP----LFASIFNPLMLVVVAILSSLILDE------KLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       169 ~~~a~~~~~~----~~~s~~~~~~pv~~~i~~~li~~e------~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      |-++-.+++.    .--.+.+.+..+++-+++++ ++|      +.-..-++|+++++.+++++-+
T Consensus       276 Yg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~  340 (344)
T PF06379_consen  276 YGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY  340 (344)
T ss_pred             HHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            6666666663    34556888889999999966 676      3334568899999988887754

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=94.82  E-value=0.026  Score=41.69  Aligned_cols=29  Identities=21%  Similarity=0.117  Sum_probs=27.7

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT   50 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~   50 (275)
                      ++++++|||+++++++|+.+.++|++++.
T Consensus        80 ~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         80 AAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999875

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=94.61  E-value=0.1  Score=44.97  Aligned_cols=70  Identities=17%  Similarity=0.291  Sum_probs=62.4

Q ss_pred             HHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          156 YSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       156 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      -.|+ ++++-..+.++++++++.+..++.-+..++|..+++.++-=|+++|....-..+|.+|++++.+..
T Consensus        89 Ptal-ata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks  158 (349)
T KOG1443|consen   89 PTAL-ATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS  158 (349)
T ss_pred             hhhh-hhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence            3444 778888999999999999999999999999999999998889999999999999999998877643

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=93.45  E-value=0.046  Score=46.99  Aligned_cols=130  Identities=16%  Similarity=0.062  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhccCcc-----------ccchhhhhhHHHHHHHHH
Q 046895           91 LGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCMEKDWS-----------QWKLGWNIRLLTVAYSGI  159 (275)
Q Consensus        91 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~g~  159 (275)
                      +++.+||+......|...++... -+.+.|=+.++.++..++..++-+...           .....+...+. ..+.|-
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~-~A~aGG   79 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVL-FAMAGG   79 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHH-HHHHhh
Confidence            56788999998888877664443 233556666665554444433322111           11111222233 333343


Q ss_pred             hhhHHHHHHHHHHHhcCCceehhhhhh-HHHHHHHHHHHHHhcCccc--hhhhhhHHHHHHHHHHhh
Q 046895          160 VASGLMVTLISWCVRTRGPLFASIFNP-LMLVVVAILSSLILDEKLH--LGSILGATLIVCGLYAVL  223 (275)
Q Consensus       160 ~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~i~~~li~~e~~s--~~~~iG~~li~~G~~l~~  223 (275)
                      +..-++..+..+++...+.+++-.+.. +.-++++++.|+ +..+.+  ...+.|..++++++++-.
T Consensus        80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga  145 (336)
T PF07168_consen   80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA  145 (336)
T ss_pred             HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence            456678888889998888887766543 223335556665 345544  245678888888877643

Transport is dependent on glucose and a proton gradient [].

>PRK02237 hypothetical protein; Provisional

Probab=93.09  E-value=0.63  Score=33.71  Aligned_cols=47  Identities=6%  Similarity=0.160  Sum_probs=40.7

Q ss_pred             ehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          180 FASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       180 ~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      ..+.+..+-.+.+.++++++-+.+|+...++|..+.++|+.++.+.+
T Consensus        61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            45667778888899999999999999999999999999998876543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=93.07  E-value=0.78  Score=40.40  Aligned_cols=142  Identities=16%  Similarity=0.125  Sum_probs=83.5

Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHhhhhhCCccchHHHHHHHHHHHHHHHHHHHhc--cCc-cccchhhhhhHHHHHHHH
Q 046895           82 KRFLGALFALGSCFGYAIWLVIQAKMSEEYPCQFSSTALMCVMGAIQAVVFALCME--KDW-SQWKLGWNIRLLTVAYSG  158 (275)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~g  158 (275)
                      .-..|.++..+++++-+.+.+-.||.. +-+  ++.......+-+.+.+|.....-  ++. +.....+...++...+.|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk-~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKVK-GWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhcC-Ccc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            456899999999999999999999874 222  34333333333333333332211  111 111112222344445556


Q ss_pred             HhhhHHHHHHHHHHHhcCCceeh-hhhhhHHHHHHHHHHHHHhcC-------ccchhhhhhHHHHHHHHHHhhhccc
Q 046895          159 IVASGLMVTLISWCVRTRGPLFA-SIFNPLMLVVVAILSSLILDE-------KLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       159 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~i~~~li~~e-------~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      ++ =+++-..|-.+++|++.+.. ++..-+..+++.++--++.++       +-....++|.++.++|+.+..+.-.
T Consensus        81 ~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~  156 (344)
T PF06379_consen   81 VL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS  156 (344)
T ss_pred             HH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence            53 35666777888899886643 444555556666665555442       2233568999999999999876533

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=92.08  E-value=0.11  Score=38.29  Aligned_cols=29  Identities=14%  Similarity=0.232  Sum_probs=27.8

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT   50 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~   50 (275)
                      ++++++||++++.+++|+.+.++|++.+-
T Consensus        74 ~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         74 LSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999985

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=91.82  E-value=0.25  Score=42.17  Aligned_cols=62  Identities=15%  Similarity=0.158  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          163 GLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       163 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      ..+-.+.+.++.+.+++....+-....+|+.+++.-+++.+++..||+|+..+..|.+.+..
T Consensus        97 i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen   97 IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence            34456667888888888888899999999999999999999999999999999999988754

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=91.50  E-value=0.15  Score=37.35  Aligned_cols=28  Identities=11%  Similarity=0.228  Sum_probs=26.8

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMIL   49 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li   49 (275)
                      ++++++||++++.|++++.+.++|++.+
T Consensus        79 ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         79 AGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999886

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=91.19  E-value=0.16  Score=37.89  Aligned_cols=30  Identities=13%  Similarity=0.159  Sum_probs=28.0

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF   51 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~   51 (275)
                      ++.+++||++++.+++++.+.++|++.+-.
T Consensus        74 ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         74 FSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            899999999999999999999999988853

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=90.71  E-value=0.21  Score=36.29  Aligned_cols=29  Identities=21%  Similarity=0.204  Sum_probs=27.6

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT   50 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~   50 (275)
                      ++++++||+++..+++++.+.++|++.+-
T Consensus        74 ~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          74 VGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999874

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=90.18  E-value=2.9  Score=30.30  Aligned_cols=46  Identities=13%  Similarity=0.257  Sum_probs=40.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          181 ASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       181 ~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      .+.+...-.+.+.++++++-+++|+...++|..+.++|+.++.+.+
T Consensus        60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            4566777788899999999999999999999999999999876654

; GO: 0016020 membrane

>PRK11431 multidrug efflux system protein; Provisional

Probab=90.04  E-value=0.24  Score=36.08  Aligned_cols=29  Identities=17%  Similarity=0.171  Sum_probs=27.5

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILT   50 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~   50 (275)
                      ++++++||++++.+++++.+.++|++.+-
T Consensus        73 ig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         73 TGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            89999999999999999999999999873

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=88.45  E-value=0.081  Score=44.45  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          151 LLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       151 ~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      |...+++++ .-+-+.++...|.|+.+.+.+.++..-..+...+++|++++.+-.+.++.|.++.++|++++....-
T Consensus        78 ~~hYilla~-~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV  153 (336)
T KOG2766|consen   78 WRHYILLAF-VDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV  153 (336)
T ss_pred             HHHhhheeE-EeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence            333455555 3445555667899999999999999999999999999999999999999999999999998876543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=88.15  E-value=0.32  Score=36.86  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=24.4

Q ss_pred             hccccccCcceeehhhhhhhhhhhhh
Q 046895           25 LGIRTRAGKAKVLGSLIGIGGAMILT   50 (275)
Q Consensus        25 ~~~~e~~s~~~~~~~~l~~~Gv~li~   50 (275)
                      +++||++++.+++|+.+.++|++++.
T Consensus        96 ~~~~E~ls~~~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         96 PWFNETFSLKKTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            38999999999999999999999985

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=87.24  E-value=0.66  Score=33.43  Aligned_cols=30  Identities=23%  Similarity=0.290  Sum_probs=26.0

Q ss_pred             HHHHHHHhcCccchhhhhhHHHHHHHHHHh
Q 046895          193 AILSSLILDEKLHLGSILGATLIVCGLYAV  222 (275)
Q Consensus       193 ~i~~~li~~e~~s~~~~iG~~li~~G~~l~  222 (275)
                      +.+++++++|++++.+..|.++++.++..+
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            457888999999999999999998887654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=87.06  E-value=11  Score=32.73  Aligned_cols=77  Identities=13%  Similarity=0.025  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcccc
Q 046895          151 LLTVAYSGIVASGLMVTLISWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKGK  228 (275)
Q Consensus       151 ~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~~  228 (275)
                      |+...++++ ...++-.+-+.++++++--...+.-...-+-+.+++.++.+.+.++...+-..+|-.|+.++...+..
T Consensus        83 l~~y~~is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s  159 (327)
T KOG1581|consen   83 LYKYSLISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNS  159 (327)
T ss_pred             hhHHhHHHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCC
Confidence            554666676 56677777789999999999999999999999999999999999999999999999999888765433

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=85.85  E-value=4.8  Score=33.41  Aligned_cols=58  Identities=19%  Similarity=0.287  Sum_probs=53.1

Q ss_pred             HHHHhcCCceehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhccc
Q 046895          170 SWCVRTRGPLFASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGKG  227 (275)
Q Consensus       170 ~~a~~~~~~~~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~~  227 (275)
                      ..++++++....+++-.+..+..+....+++|.+.+.......++++...+...+...
T Consensus        86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~  143 (309)
T COG5070          86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ  143 (309)
T ss_pred             ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence            5899999999999999999999999999999999999999999999988888777654

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.81  E-value=2.1  Score=30.42  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          192 VAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       192 ~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      -+.+++++++|++.|.++.|..++..|+..+.+
T Consensus        83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            345899999999999999999999999887654

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.40  E-value=0.99  Score=38.54  Aligned_cols=110  Identities=17%  Similarity=0.220  Sum_probs=75.5

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhcc-----Cccccchhh--hhhHHHHHHHHHhhhHHHHHHHHHHHhcCCceehhh
Q 046895          111 YPCQFSSTALMCVMGAIQAVVFALCMEK-----DWSQWKLGW--NIRLLTVAYSGIVASGLMVTLISWCVRTRGPLFASI  183 (275)
Q Consensus       111 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~--~~~~~~l~~~g~~~~~~~~~~~~~a~~~~~~~~~s~  183 (275)
                      .+.+.-++.+++++...++..+......     .++..+..-  ..+...   +.+ ........-+.++++.+.+..-+
T Consensus        58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlp---lsv-Vfi~mI~fnnlcL~yVgVaFYyv  133 (347)
T KOG1442|consen   58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLP---LSV-VFILMISFNNLCLKYVGVAFYYV  133 (347)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcc---hhh-eeeeehhccceehhhcceEEEEe
Confidence            4444677888888887777766543322     112222111  111111   111 11223355678999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhh
Q 046895          184 FNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLW  224 (275)
Q Consensus       184 ~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~  224 (275)
                      --.+..+|++++.|++++++-+.....++.+|+.|..+-..
T Consensus       134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvd  174 (347)
T KOG1442|consen  134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVD  174 (347)
T ss_pred             ccchhhhHHHHhHHhhcccccccccceeehhheehheeccc
Confidence            99999999999999999999999999999999999877543

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=84.31  E-value=3.4  Score=29.74  Aligned_cols=47  Identities=11%  Similarity=0.210  Sum_probs=40.1

Q ss_pred             ehhhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          180 FASIFNPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       180 ~~s~~~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      ..+.+..+-.+.+.++.++.=+.+|+...|+|..+.++|+.++....
T Consensus        60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p  106 (109)
T COG1742          60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP  106 (109)
T ss_pred             HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence            45667778888899999999999999999999999999987766543

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=83.81  E-value=2.9  Score=30.22  Aligned_cols=60  Identities=22%  Similarity=0.248  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhh
Q 046895          164 LMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVL  223 (275)
Q Consensus       164 ~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~  223 (275)
                      .+..+|+.-+++.+-+.+..+ +.+.-.|+.+.+..+-.|......++|..++++|+.+..
T Consensus        64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            344566777778777766654 556788899999885555557778999999999998753

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=82.81  E-value=1.1  Score=34.52  Aligned_cols=28  Identities=11%  Similarity=0.293  Sum_probs=26.2

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMIL   49 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li   49 (275)
                      +++++++|+++..+++|+.++++|+++-
T Consensus       124 ~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen  124 LSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            8999999999999999999999998763

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.26
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.96
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	92.75
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	92.67

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.26  E-value=2e-11  Score=92.57  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=54.3

Q ss_pred             HHHHhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhcc
Q 046895          156 YSGIVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWGK  226 (275)
Q Consensus       156 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~~  226 (275)
                      .+++++++++|++|++++++++++.+..+ .++.|++++++++++++|++++.+++|++++++|++++...+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            35566889999999999999999999998 899999999999999999999999999999999999987644

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.96  E-value=8.8e-09  Score=75.21  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=64.3

Q ss_pred             HHHHhhhHHHHHHHHHHHhcCCceehhhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHhhhc
Q 046895          156 YSGIVASGLMVTLISWCVRTRGPLFASIF-NPLMLVVVAILSSLILDEKLHLGSILGATLIVCGLYAVLWG  225 (275)
Q Consensus       156 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~i~~~li~~e~~s~~~~iG~~li~~G~~l~~~~  225 (275)
                      ..+++..++++.++.+++++.+.+.+..+ ..+.|++++++++++++|++|+.+++|+.+++.|++++...
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34556788999999999999999999888 79999999999999999999999999999999999998654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=92.75  E-value=0.057  Score=40.34  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF   51 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~   51 (275)
                      +++++++|++++.+++|+.+.++|++++..
T Consensus        74 ~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           74 LSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            889999999999999999999999999864

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=92.67  E-value=0.059  Score=38.58  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=28.2

Q ss_pred             HHHhccccccCcceeehhhhhhhhhhhhhh
Q 046895           22 LEKLGIRTRAGKAKVLGSLIGIGGAMILTF   51 (275)
Q Consensus        22 l~~~~~~e~~s~~~~~~~~l~~~Gv~li~~   51 (275)
                      ++++++||++++.+++|+.+.++|++++..
T Consensus        74 ~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           74 LSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            889999999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00