Citrus Sinensis ID: 046899

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
Protein Sequence
MKEGRKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHccccHHHHcccccccccEEEEEEcccccccccccEEEEEEEEEcccccccccEEEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccccccEEEEccccccEEEEEEccccccEEEEEcccccEEEEEccccccccccccEEEcccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccccccccccccEEEcccccEEEEEEccccEEEEEccccccccccHHHHcccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHcccHHHHHHHHcccHHHHHHHccccccccEEEEEcccccccccccccEEEEEEcccccccccEEEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEcccccccccccccccccccccccEEEEcccccEEEEEEccccccEEEEcccccEEEEEEcccccccccccccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEccccccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccccccccccHHHEEcccccccEEEccccccccEEEccccccEEEEEccccEEEEEEccHcccccHHHcHHHHccccEEEEEccccc
Coil and Loop (DISEMBL)
mkegrkgmersvdDRYTQWKSLVPVLYDWLANhnlvwpslscrwgpqleqatyKNRQRLYLSEQfneearspfvkkfktiihpgevnrirelpqnskivathtdspdvliwdveaqpnrhavlgaadshpdldqsVVLWSIQDHVSAlaaepgsakstasggansknasksggngdkplespsigargkylghedtvedvqfcpssaqefcsvgddsclilwdarsgstpavkvekahnadihcvdwnphdvnliltgsadnsihmfdrrkltsdgvgspihkfeghSAAVLCvqwspdkssvfgssaedgilniwdhekigekqdygelkypiihpayssdmLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFkshifgcdksc
Flexible Loop (DISEMBL)
mkegrkgmersvddrytQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEqfneearspfvKKFKTIIHpgevnrirelpqnsKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAepgsakstasggansknasksggngdkplesPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDkfkshifgcdksc
Low Complexity Region (SEG)
MKEGRKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC
Disordered region (IsUnstruct)
**************RYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVS*******************************************YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC****
Disordered Region (DISOPRED)
***********VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ******************SVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC
Disordered Region (DISEMBL)
************DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSA*****************************KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC
Disordered Region (DISPRO)
********ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ***********SH*DLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEGRKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	407	2.2.26 [Sep-21-2011]
O22607	507	WD-40 repeat-containing p	yes	no	0.955	0.767	0.595	1e-150
Q9SU78	487	WD-40 repeat-containing p	no	no	0.933	0.780	0.567	1e-139
Q7ZTY4	426	Histone-binding protein R	yes	no	0.872	0.833	0.284	4e-36
Q5M7K4	425	Histone-binding protein R	yes	no	0.877	0.84	0.281	5e-36
Q60972	425	Histone-binding protein R	yes	no	0.877	0.84	0.281	8e-36
Q09028	425	Histone-binding protein R	yes	no	0.877	0.84	0.281	8e-36
Q3MHL3	425	Histone-binding protein R	yes	no	0.877	0.84	0.281	8e-36
Q6INH0	425	Histone-binding protein R	N/A	no	0.877	0.84	0.281	9e-36
Q6P315	425	Histone-binding protein R	no	no	0.869	0.832	0.291	1e-35
Q24572	430	Probable histone-binding	yes	no	0.862	0.816	0.275	1e-35

>sp|O22607|MSI4_ARATH WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3

 Score =  533 bits (1372), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/467 (59%), Positives = 320/467 (68%), Gaps = 78/467 (16%)

Query: 1   MKEGRKGMERS--VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQR 58
           MKE  K  ++S  VD++Y+QWK LVP+LYDWLANHNLVWPSLSCRWGPQLEQATYKNRQR
Sbjct: 51  MKESGKKTQQSPSVDEKYSQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNRQR 110

Query: 59  LYLSEQ-----------------------------FNEEARSPFVKKFKTIIHPGEVNRI 89
           LYLSEQ                             FNEEARSPFVKK+KTIIHPGEVNRI
Sbjct: 111 LYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRI 170

Query: 90  RELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL----------------- 132
           RELPQNSKIVATHTDSPDVLIWDVE QPNRHAVLGAA+S PDL                 
Sbjct: 171 RELPQNSKIVATHTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCP 230

Query: 133 ----------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP 182
                     D+SVVLWSIQDH++ +  +  S+ S            K  G G    ESP
Sbjct: 231 TEPFVLSGGKDKSVVLWSIQDHITTIGTDSKSSGSII----------KQTGEGTDKNESP 280

Query: 183 SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI 242
           ++G RG Y GHEDTVEDV F P+SAQEFCSVGDDSCLILWDAR+G+ P  KVEKAH+AD+
Sbjct: 281 TVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADL 340

Query: 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302
           HCVDWNPHD NLILTGSADN++ +FDRRKLT++GVGSPI+KFEGH AAVLCVQWSPDKSS
Sbjct: 341 HCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSS 400

Query: 303 VFGSSAEDGILNIWDHEKIGEKQDYGELKYP----IIHPAYSSDMLDIETKLLTSIGMHL 358
           VFGSSAEDG+LNIWD++++ +K D    K P      H  +   ++D          +  
Sbjct: 401 VFGSSAEDGLLNIWDYDRVSKKSDRA-AKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVS 459

Query: 359 IHGRLLVCLTM--VKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403
           +      C T      L+IWRM DLIYRPEEEV+AEL+KFKSH+  C
Sbjct: 460 VSDD---CETTGGGGTLQIWRMSDLIYRPEEEVVAELEKFKSHVMTC 503

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of the flowering autonomous pathway which positively regulates flowering by promoting transcriptional repression of the flowering repressor FLC. May promote histone deacetylation at the FLC locus leading to the formation of repressive chromatin structures. Also negatively regulates cold-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU78|MSI5_ARATH WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2

 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/456 (56%), Positives = 315/456 (69%), Gaps = 76/456 (16%)

Query: 5   RKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ 64
           ++  + +VDD Y+QWK+L+P+LYD   NH LVWPSLSCRWGPQLEQA  K  QRLYLSEQ
Sbjct: 47  QQSQKATVDDTYSQWKTLLPILYDSFVNHTLVWPSLSCRWGPQLEQAGSKT-QRLYLSEQ 105

Query: 65  --------------------FNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD 104
                                NE+A SPFVKK+KTIIHPGEVNRIRELPQNSKIVATHTD
Sbjct: 106 TNGSVPNTLVIANCETVNRQLNEKAHSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTD 165

Query: 105 SPDVLIWDVEAQPNRHAVLGAADSHPDL---------------------------DQSVV 137
           SPD+LIW+ E QP+R+AVLGA DS PDL                           D+SV+
Sbjct: 166 SPDILIWNTETQPDRYAVLGAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVI 225

Query: 138 LWSIQDHVSALAAE---PGSA-KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH 193
           LW+IQDH++   ++   PGS+ K T  G      + K+GG        PS+G RG Y GH
Sbjct: 226 LWNIQDHITMAGSDSKSPGSSFKQTGEG------SDKTGG--------PSVGPRGIYNGH 271

Query: 194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVN 253
           +DTVEDV FCPSSAQEFCSVGDDSCL+LWDAR+G++PA+KVEKAH+AD+HCVDWNPHD N
Sbjct: 272 KDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNN 331

Query: 254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313
           LILTGSADN++ +FDRR LTS+GVGSP++KFEGH AAVLCVQWSPDKSSVFGSSAEDG+L
Sbjct: 332 LILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLL 391

Query: 314 NIWDHEKIGEKQDYGELKYP----IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM 369
           NIWD +++G+K +    K P      H  +   ++D    LL    +  +      C ++
Sbjct: 392 NIWDCDRVGKKSERA-TKTPDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDN---CESI 447

Query: 370 --VKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403
                L+IWRM DLIYRPE+EVL EL+KFKSH+F C
Sbjct: 448 GGGGTLQIWRMSDLIYRPEDEVLTELEKFKSHVFTC 483

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7ZTY4|RBBP7_DANRE Histone-binding protein RBBP7 OS=Danio rerio GN=rbbp7 PE=2 SV=1

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 188/425 (44%), Gaps = 70/425 (16%)

Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 13  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVNRPEGKDYVVHRLVLGTHTS 72

Query: 67  EEARSPFVKKFKT-----------------------------------IIHPGEVNRIRE 91
           +E     +   +                                    I H GEVNR R 
Sbjct: 73  DEQNHLVIASAQIPNDDAQFDASHYDSEKGAEFGGFGSVSGKIEIEIKINHEGEVNRARY 132

Query: 92  LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAE 151
           +PQN  I+AT T + DVL +D    P++    G  D  PDL     L   Q     L+  
Sbjct: 133 MPQNPCIIATKTPTSDVLAFDYTKHPSKPDPSG--DCSPDLR----LRGHQKEGYGLSWN 186

Query: 152 PGSAKSTASGGANSKNA--SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQE 209
           P  + +  S   +        SG     P E   + A+  + GH   VEDV +       
Sbjct: 187 PNLSGNLLSASDDHTICLWDISGA----PKEGKIVDAKTIFTGHTAVVEDVSWHLLHESL 242

Query: 210 FCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
           F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALW 301

Query: 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ-- 325
           D R L        +H FE H   +  VQWSP   ++  SS  D  LN+WD  KIGE+Q  
Sbjct: 302 DLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 356

Query: 326 ---DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI 382
              + G  +   IH  +++ + D           +     ++  ++   ++++W+M + I
Sbjct: 357 EDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQVWQMAENI 408

Query: 383 YRPEE 387
           Y  EE
Sbjct: 409 YNDEE 413

Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Danio rerio (taxid: 7955)

>sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3

 Score =  152 bits (384), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 190/422 (45%), Gaps = 65/422 (15%)

Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTS 73

Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 74  DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN  I+AT T S DVL++D    P++    G  + +PDL     L   Q     L+  P
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LRGHQKEGYGLSWNP 187

Query: 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212
             + +  S  A+  +          P E   + A+  + GH   VEDV +       F S
Sbjct: 188 NLSGNLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS 245

Query: 213 VGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270
           V DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304

Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ----- 325
            L        +H FE H   +  VQWSP   ++  SS  D  LN+WD  KIGE+Q     
Sbjct: 305 NLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385
           + G  +   IH  +++ + D           +     ++  ++   ++++W+M + IY  
Sbjct: 360 EDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQVWQMAENIYND 411

Query: 386 EE 387
           E+
Sbjct: 412 ED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5

 Score =  151 bits (382), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 189/422 (44%), Gaps = 65/422 (15%)

Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73

Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 74  DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN  I+AT T S DVL++D    P++    G  + +PDL     L   Q     L+  P
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LRGHQKEGYGLSWNP 187

Query: 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212
             +    S  A+  +          P E   + A+  + GH   VEDV +       F S
Sbjct: 188 NLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS 245

Query: 213 VGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270
           V DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304

Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ----- 325
            L        +H FE H   +  VQWSP   ++  SS  D  LN+WD  KIGE+Q     
Sbjct: 305 NLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385
           + G  +   IH  +++ + D           +     ++  ++   ++++W+M + IY  
Sbjct: 360 EDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQVWQMAENIYND 411

Query: 386 EE 387
           E+
Sbjct: 412 ED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Mus musculus (taxid: 10090)

>sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3

 Score =  151 bits (382), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 189/422 (44%), Gaps = 65/422 (15%)

Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73

Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 74  DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN  I+AT T S DVL++D    P++    G  + +PDL     L   Q     L+  P
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LRGHQKEGYGLSWNP 187

Query: 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212
             +    S  A+  +          P E   + A+  + GH   VEDV +       F S
Sbjct: 188 NLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS 245

Query: 213 VGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270
           V DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304

Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ----- 325
            L        +H FE H   +  VQWSP   ++  SS  D  LN+WD  KIGE+Q     
Sbjct: 305 NLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385
           + G  +   IH  +++ + D           +     ++  ++   ++++W+M + IY  
Sbjct: 360 EDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQVWQMAENIYND 411

Query: 386 EE 387
           E+
Sbjct: 412 ED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Homo sapiens (taxid: 9606)

>sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3

 Score =  151 bits (382), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 189/422 (44%), Gaps = 65/422 (15%)

Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73

Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 74  DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN  I+AT T S DVL++D    P++    G  + +PDL     L   Q     L+  P
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LRGHQKEGYGLSWNP 187

Query: 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212
             +    S  A+  +          P E   + A+  + GH   VEDV +       F S
Sbjct: 188 NLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS 245

Query: 213 VGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270
           V DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304

Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ----- 325
            L        +H FE H   +  VQWSP   ++  SS  D  LN+WD  KIGE+Q     
Sbjct: 305 NLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385
           + G  +   IH  +++ + D           +     ++  ++   ++++W+M + IY  
Sbjct: 360 EDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQVWQMAENIYND 411

Query: 386 EE 387
           E+
Sbjct: 412 ED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Bos taurus (taxid: 9913)

>sp|Q6INH0|RBP4B_XENLA Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-b PE=1 SV=3

 Score =  151 bits (381), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 190/422 (45%), Gaps = 65/422 (15%)

Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTS 73

Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 74  DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN  I+AT T S DVL++D    P++    G  + +PDL     L   Q     L+  P
Sbjct: 134 PQNPCIIATKTPSCDVLVFDYTKHPSKPDPSG--ECNPDLR----LRGHQKEGYGLSWNP 187

Query: 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212
             + +  S  A+  +          P E   + A+  + GH   VEDV +       F S
Sbjct: 188 NLSGNLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS 245

Query: 213 VGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270
           V DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304

Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ----- 325
            L        +H FE H   +  VQWSP   ++  SS  D  LN+WD  KIGE+Q     
Sbjct: 305 NLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385
           + G  +   IH  +++ + D           +     ++  ++   ++++W+M + IY  
Sbjct: 360 EDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQVWQMAENIYND 411

Query: 386 EE 387
           E+
Sbjct: 412 ED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

>sp|Q6P315|RBBP7_XENTR Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 188/425 (44%), Gaps = 71/425 (16%)

Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+     L L    +
Sbjct: 13  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYALHWLVLGTHTS 72

Query: 67  EEARSPFVKKFKT----------------------------------IIHPGEVNRIREL 92
           +E     V + +                                   I H GEVNR R +
Sbjct: 73  DEQNHLVVARVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYM 132

Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN  I+AT T S DVL++D    P++    G  D  PDL     L   Q     L    
Sbjct: 133 PQNPCIIATKTPSADVLVFDYTKHPSKPDPSG--DCSPDLR----LRGHQKEGYGL---- 182

Query: 153 GSAKSTASGGANSKNASKSGGNGD---KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQE 209
            S  S  SG   S +   +    D    P E   + A+  + GH   VEDV +       
Sbjct: 183 -SWNSNLSGHLLSASDDHTVCLWDISAGPKEGKVVDAKAIFTGHSAVVEDVAWHLLHESL 241

Query: 210 FCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
           F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++
Sbjct: 242 FGSVADDQKLMIWDTRSNTTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALW 300

Query: 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ-- 325
           D R L        +H FE H   +  V WSP   ++  SS  D  LN+WD  KIGE+Q  
Sbjct: 301 DLRNLKLK-----LHSFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 355

Query: 326 ---DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI 382
              + G  +   IH  +++ + D           +     ++  ++   +++IW+M + I
Sbjct: 356 EDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQIWQMAENI 407

Query: 383 YRPEE 387
           Y  EE
Sbjct: 408 YNDEE 412

Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q24572|CAF1_DROME Probable histone-binding protein Caf1 OS=Drosophila melanogaster GN=Caf1 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 189/428 (44%), Gaps = 77/428 (17%)

Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 18  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 77

Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 78  DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 137

Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN+ ++AT T S DVL++D    P++    G  +  PDL     L   Q     L+  P
Sbjct: 138 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLR----LRGHQKEGYGLSWNP 191

Query: 153 GSAKSTASGGANSK------NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206
                  S   +        NA+        P E   I A+  + GH   VEDV +    
Sbjct: 192 NLNGYLLSASDDHTICLWDINAT--------PKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243

Query: 207 AQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264
              F SV DD  L++WD R+ +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTV 302

Query: 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324
            ++D R L        +H FE H   +  VQWSP   ++  SS  D  L++WD  KIGE+
Sbjct: 303 ALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357

Query: 325 Q-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379
           Q     + G  +   IH  +++ + D           +     ++  ++   ++++W+M 
Sbjct: 358 QSTEDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWIICSVSEDNIMQVWQMA 409

Query: 380 DLIYRPEE 387
           + +Y  EE
Sbjct: 410 ENVYNDEE 417

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the nucleosome remodeling and deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the nucleosome remodeling factor (NURF) complex, which catalyzes ATP-dependent nucleosome sliding and facilitates transcription of chromatin; and the polycomb group (PcG) repressor complex ESC-E(Z), which promotes repression of homeotic genes during development. Also required for transcriptional repression of E2F target genes by E2f2 and Rbf or Rbf2.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
255572951	466	WD-repeat protein, putative [Ricinus com	0.963	0.841	0.651	1e-165
359482834	453	PREDICTED: WD-40 repeat-containing prote	0.933	0.838	0.639	1e-161
224135005	465	nucleosome/chromatin assembly factor gro	0.955	0.836	0.633	1e-160
255546107	503	WD-repeat protein, putative [Ricinus com	0.972	0.787	0.622	1e-158
224112132	502	nucleosome/chromatin assembly factor gro	0.972	0.788	0.622	1e-157
449489878	518	PREDICTED: WD-40 repeat-containing prote	0.963	0.756	0.621	1e-156
449435868	512	PREDICTED: WD-40 repeat-containing prote	0.963	0.765	0.621	1e-156
224122490	467	nucleosome/chromatin assembly factor gro	0.943	0.822	0.605	1e-155
356530366	504	PREDICTED: WD-40 repeat-containing prote	0.918	0.742	0.626	1e-154
356556284	508	PREDICTED: WD-40 repeat-containing prote	0.918	0.736	0.614	1e-153

>gi|255572951|ref|XP_002527406.1| WD-repeat protein, putative [Ricinus communis] gi|223533216|gb|EEF34972.1| WD-repeat protein, putative [Ricinus communis]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 306/470 (65%), Positives = 337/470 (71%), Gaps = 78/470 (16%)

Query: 3   EGRKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLS 62
           +GRK    SVDDRY QWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLS
Sbjct: 4   KGRK----SVDDRYAQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLS 59

Query: 63  EQ-----------------------------FNEEARSPFVKKFKTIIHPGEVNRIRELP 93
           EQ                             FNEEARSPFV+K+KTI+HPGEVNRIRELP
Sbjct: 60  EQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVRKYKTILHPGEVNRIRELP 119

Query: 94  QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------------- 132
           QNSKIVATHTDSP+VLIWDV+AQPNRHAVLGA +S PDL                     
Sbjct: 120 QNSKIVATHTDSPEVLIWDVDAQPNRHAVLGATESRPDLVLTGHTDDAEFALAMCPTEPF 179

Query: 133 ------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA 186
                 D+SVVLWSIQDH+S LAA+P S KS  S G+++K+ASK+GG+ DK  +SPSIG 
Sbjct: 180 VLSGGKDKSVVLWSIQDHISVLAADPVSLKSPGSSGSSTKHASKAGGSNDKSTKSPSIGP 239

Query: 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD 246
           RG + GHEDTVEDVQFCPSSA EFCSVGDDSCLILWDAR+GS+P VKVEKAHN+D+HCVD
Sbjct: 240 RGIFQGHEDTVEDVQFCPSSAHEFCSVGDDSCLILWDARTGSSPVVKVEKAHNSDLHCVD 299

Query: 247 WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306
           WNPHDVN ILTGSADN+IHMFDRR LTS G+GSPIHKFEGHSAAVLCVQWSPD SSVFGS
Sbjct: 300 WNPHDVNFILTGSADNTIHMFDRRSLTSGGLGSPIHKFEGHSAAVLCVQWSPDNSSVFGS 359

Query: 307 SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC 366
           SAEDG+LNIWD EKIG+KQD   L  P   P           K++        H      
Sbjct: 360 SAEDGLLNIWDFEKIGKKQDSAGLNLPSAPPGLFFQHAGHRDKIVD------FHWNSSDP 413

Query: 367 LTMVKV------------LEIWRMIDLIYRPEEEVLAELDKFKSHIFGCD 404
            T+V V            L+IWRMIDLIYRPEEEVL EL+ FKSHI  CD
Sbjct: 414 WTIVSVSDDCESTSGGGTLQIWRMIDLIYRPEEEVLTELEDFKSHILTCD 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482834|ref|XP_003632850.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Vitis vinifera] gi|297743080|emb|CBI35947.3| unnamed protein product [Vitis vinifera]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 303/474 (63%), Positives = 332/474 (70%), Gaps = 94/474 (19%)

Query: 1   MKEGRKGMERS--VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQR 58
           MKE     E S  VD+RYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQR
Sbjct: 1   MKETSTAGETSISVDERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQR 60

Query: 59  LYLSEQ-----------------------------FNEEARSPFVKKFKTIIHPGEVNRI 89
           LYLSEQ                             FNEEARSPFVKKFKTIIHPGEVNRI
Sbjct: 61  LYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHIAQFNEEARSPFVKKFKTIIHPGEVNRI 120

Query: 90  RELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL----------------- 132
           RELPQNSKIVATHTDSPDVLIWDVE QPNRHAVLG  +S PDL                 
Sbjct: 121 RELPQNSKIVATHTDSPDVLIWDVETQPNRHAVLGTPESRPDLILTGHKDNAEFALAMCP 180

Query: 133 ----------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP 182
                     D+SVVLWSIQDH+S LAA+PGSAKST          SK+GG  DKP+ESP
Sbjct: 181 TEPLVLSGGKDKSVVLWSIQDHISTLAADPGSAKST----------SKAGGGNDKPVESP 230

Query: 183 SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI 242
           SIGARG Y GH+DTVEDVQFCP SAQEFCSVGDDSCLILWDARSG+TPA+KVEKAHNAD+
Sbjct: 231 SIGARGIYQGHDDTVEDVQFCPLSAQEFCSVGDDSCLILWDARSGTTPAIKVEKAHNADL 290

Query: 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302
           HCVDWNPHD+NLILTGSADN++ MFDRRKLTS G+GSPIH FEGH+AAVLCVQWSPDK+S
Sbjct: 291 HCVDWNPHDINLILTGSADNTVRMFDRRKLTSGGIGSPIHTFEGHTAAVLCVQWSPDKAS 350

Query: 303 VFGSSAEDGILNIWDHEKIGEKQDYGELKYPII-HPAYSSDMLDIETKLLTSIGMHLIHG 361
           +FGSSAEDGILN+W+HEKI +KQ           H  +   ++D              H 
Sbjct: 351 IFGSSAEDGILNLWNHEKIDKKQAPNAPPGLFFRHAGHRDKVVD-------------FHW 397

Query: 362 RLLVCLTMVKV------------LEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403
                 T+V V            L+IWRMIDLIYR E+EVLAELD FK+H+  C
Sbjct: 398 NASDPWTIVSVSDDGESTGGGGTLQIWRMIDLIYRNEDEVLAELDNFKAHLATC 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135005|ref|XP_002327543.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222836097|gb|EEE74518.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 297/469 (63%), Positives = 331/469 (70%), Gaps = 80/469 (17%)

Query: 12  VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ------- 64
           V++RYTQWK+LVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ       
Sbjct: 3   VNERYTQWKTLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQARLLIVP 62

Query: 65  -----------------------FNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVAT 101
                                  FNEEARSPFVKK+KTIIHPGEVNRIRELPQN+ IVAT
Sbjct: 63  NTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNTNIVAT 122

Query: 102 HTDSPDVLIWDVEAQPNRHAVLGAADSHPDL----------------------------- 132
           HTDSPDVLIWDV++QPNRHAVLGA +S PDL                             
Sbjct: 123 HTDSPDVLIWDVDSQPNRHAVLGATESCPDLVIPGPILTGHKDDAEFALAMCPTEPFVLS 182

Query: 133 ---DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK 189
              D+ VVLWSIQDH+S LAAEPG +KS  SGG  +K+ASK+GG  DK  +SPSIG R  
Sbjct: 183 GGKDKLVVLWSIQDHISTLAAEPGLSKSPGSGGFPNKSASKAGGGNDKRTKSPSIGPRDV 242

Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
           Y GH DTVEDVQFCPSSAQEFCSVGDDSCL+LWDAR+G TP VKVEKAHNAD+HCVDWNP
Sbjct: 243 YQGHTDTVEDVQFCPSSAQEFCSVGDDSCLVLWDARAGCTPVVKVEKAHNADLHCVDWNP 302

Query: 250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309
           HDVNLILTGSADNS+HMFDRR L   GVG+P+HKFEGH+AAVLCVQWSPDKSSVFG+SAE
Sbjct: 303 HDVNLILTGSADNSVHMFDRRNLNLGGVGAPVHKFEGHNAAVLCVQWSPDKSSVFGTSAE 362

Query: 310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM 369
           DGILNIWD+EKIG+KQD   LK P   P           K++        H       T+
Sbjct: 363 DGILNIWDYEKIGKKQDSTGLKVPTAPPGLFFRHAGHRDKVVD------FHWNASDPWTI 416

Query: 370 VKV------------LEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS 406
           V V            L+IWRMIDLI+R EE+VL EL+ FKSHI  C++S
Sbjct: 417 VSVSDDGESTGGGGTLQIWRMIDLIHRAEEDVLVELENFKSHILACERS 465

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546107|ref|XP_002514113.1| WD-repeat protein, putative [Ricinus communis] gi|223546569|gb|EEF48067.1| WD-repeat protein, putative [Ricinus communis]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 293/471 (62%), Positives = 334/471 (70%), Gaps = 75/471 (15%)

Query: 1   MKEGRKGMER---SVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ 57
           MKEG+K  ++   +VD++YTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ
Sbjct: 36  MKEGKKSQQQQQHTVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ 95

Query: 58  RLYLSEQ-----------------------------FNEEARSPFVKKFKTIIHPGEVNR 88
           RLYLSEQ                             FNEEARSPFVKK+KTIIHPGEVNR
Sbjct: 96  RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHIAQFNEEARSPFVKKYKTIIHPGEVNR 155

Query: 89  IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL---------------- 132
           IRELPQNS+IVATHTD PDVLIWDVEAQPNRHAVLGA +S PDL                
Sbjct: 156 IRELPQNSRIVATHTDGPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 215

Query: 133 -----------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLES 181
                      D+SVVLWSIQDH++A A +P +AKS  SGG+  K A   G   D+  ES
Sbjct: 216 PTEPFVLSGGKDKSVVLWSIQDHITASATDPATAKSPGSGGSIIKRA---GEGNDRAAES 272

Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
           PS+G RG Y GHEDTVEDV FCPSSAQEFCSVGDDSCLILWDAR GS+PAVKVEKAHNAD
Sbjct: 273 PSVGPRGIYQGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARIGSSPAVKVEKAHNAD 332

Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
           +HCVDWNPHD NLI+TGSADNS+ MFDRR LTS+GVG+P++KFEGH AAVLCVQWSPDKS
Sbjct: 333 LHCVDWNPHDNNLIITGSADNSVRMFDRRNLTSNGVGTPVYKFEGHKAAVLCVQWSPDKS 392

Query: 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYP-------IIHPAYSSDMLDIETKLLTSI 354
           SVFGSSAEDG+LNIWD++K+G+K +    + P         H  +   ++D         
Sbjct: 393 SVFGSSAEDGLLNIWDYDKVGKKTERA-TRAPNSPAGLFFQHAGHRDKVVDFHWNASDPW 451

Query: 355 GMHLIHGRLLVCLTM--VKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403
            +  +      C T      L+IWRM DLIYRPE+EVLAEL+KFKSH+  C
Sbjct: 452 TIVSVSDD---CDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVIEC 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112132|ref|XP_002332825.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222833256|gb|EEE71733.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 293/471 (62%), Positives = 332/471 (70%), Gaps = 75/471 (15%)

Query: 1   MKEGRKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY 60
           MKEG+K  + SVDD+YTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY
Sbjct: 35  MKEGKKAHQHSVDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY 94

Query: 61  LSEQ---------------------------------FNEEARSPFVKKFKTIIHPGEVN 87
           LSEQ                                 FNEEARSPFVKK+KTIIHPGEVN
Sbjct: 95  LSEQAKILTDGSVPNTLVIANCEVVKSRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVN 154

Query: 88  RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------- 132
           RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA +S PDL               
Sbjct: 155 RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHLDNAEFALAM 214

Query: 133 ------------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLE 180
                       D+SVVLWSIQDH+++ A +P + KS  SGG+  K   K+G   DK  +
Sbjct: 215 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT-KSPGSGGSIIK---KAGDGNDKATD 270

Query: 181 SPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA 240
            PS+G RG Y GHEDTVEDV FCPSSAQEFCSVGDDSCLILWDAR G+ PA+KVEKAHNA
Sbjct: 271 GPSVGPRGIYQGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARDGTNPAIKVEKAHNA 330

Query: 241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK 300
           D+HCVDWNPHD NLILTGSAD S+ MFDRR LTS+GVGSP++KFEGH+AAVLCVQWSPDK
Sbjct: 331 DLHCVDWNPHDDNLILTGSADTSVCMFDRRNLTSNGVGSPVYKFEGHNAAVLCVQWSPDK 390

Query: 301 SSVFGSSAEDGILNIWDHEKIGEKQD--YGELKYP----IIHPAYSSDMLDIETKLLTSI 354
           +SVFGSSAEDG+LNIWD+EK+G++ +     L  P      H  +   ++D         
Sbjct: 391 ASVFGSSAEDGLLNIWDYEKVGKRSERLTRALNSPAGLFFQHAGHRDKVVDFHWNASDPW 450

Query: 355 GMHLIHGRLLVCLTM--VKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403
            +  +      C T      L+IWRM DLIYRPE+EVLAEL+KFKSH+  C
Sbjct: 451 TLVSVSDD---CDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVSC 498

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489878|ref|XP_004158447.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Cucumis sativus]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 292/470 (62%), Positives = 328/470 (69%), Gaps = 78/470 (16%)

Query: 2   KEGRKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYL 61
           K+ +   + SVD+RYTQWKSLVPVLYDW ANHNLVWPSLSCRWGPQLEQATYKNRQRLYL
Sbjct: 55  KKMKAQQQPSVDERYTQWKSLVPVLYDWFANHNLVWPSLSCRWGPQLEQATYKNRQRLYL 114

Query: 62  SEQ-----------------------------FNEEARSPFVKKFKTIIHPGEVNRIREL 92
           SEQ                             FNEEARSPFVKK+KTIIHPGEVNRIREL
Sbjct: 115 SEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIREL 174

Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-------------------- 132
           PQNS+IVATHTDSPDVLIWDVEAQPNRHAVLGA +S PDL                    
Sbjct: 175 PQNSRIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTEP 234

Query: 133 -------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG 185
                  D+ VVLWSIQDH++  A + G++KS  SGG+  K   K G   DK  + PSIG
Sbjct: 235 YVLSGGKDKLVVLWSIQDHITTSATDAGASKSPGSGGSIIK---KPGEANDKASDGPSIG 291

Query: 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV 245
            RG Y GHEDTVEDV FCPS+AQEFCSVGDDSCLILWDAR+GS+PAVKVEKAHNAD+HCV
Sbjct: 292 PRGVYHGHEDTVEDVTFCPSNAQEFCSVGDDSCLILWDARTGSSPAVKVEKAHNADLHCV 351

Query: 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305
           DWNPHD NLI+TGSADNSI +FDRR LTS+GVGSPI+KFEGH AAVLCVQWSPDKSSVFG
Sbjct: 352 DWNPHDDNLIITGSADNSIRLFDRRNLTSNGVGSPIYKFEGHKAAVLCVQWSPDKSSVFG 411

Query: 306 SSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV 365
           SSAEDG+LNIWD++K+G+K +    + P   P           K++        H     
Sbjct: 412 SSAEDGLLNIWDYDKVGKKTERA-TRTPAAPPGLFFQHAGHRDKVVD------FHWNAAD 464

Query: 366 CLTMVKV------------LEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403
             T+V V            L+IWRM DLIYRPEEEVLAEL+KFKSH+  C
Sbjct: 465 PWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVIEC 514

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435868|ref|XP_004135716.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Cucumis sativus]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 292/470 (62%), Positives = 328/470 (69%), Gaps = 78/470 (16%)

Query: 2   KEGRKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYL 61
           K+ +   + SVD+RYTQWKSLVPVLYDW ANHNLVWPSLSCRWGPQLEQATYKNRQRLYL
Sbjct: 49  KKMKAQQQPSVDERYTQWKSLVPVLYDWFANHNLVWPSLSCRWGPQLEQATYKNRQRLYL 108

Query: 62  SEQ-----------------------------FNEEARSPFVKKFKTIIHPGEVNRIREL 92
           SEQ                             FNEEARSPFVKK+KTIIHPGEVNRIREL
Sbjct: 109 SEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIREL 168

Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-------------------- 132
           PQNS+IVATHTDSPDVLIWDVEAQPNRHAVLGA +S PDL                    
Sbjct: 169 PQNSRIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTEP 228

Query: 133 -------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG 185
                  D+ VVLWSIQDH++  A + G++KS  SGG+  K   K G   DK  + PSIG
Sbjct: 229 YVLSGGKDKLVVLWSIQDHITTSATDAGASKSPGSGGSIIK---KPGEANDKASDGPSIG 285

Query: 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV 245
            RG Y GHEDTVEDV FCPS+AQEFCSVGDDSCLILWDAR+GS+PAVKVEKAHNAD+HCV
Sbjct: 286 PRGVYHGHEDTVEDVTFCPSNAQEFCSVGDDSCLILWDARTGSSPAVKVEKAHNADLHCV 345

Query: 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305
           DWNPHD NLI+TGSADNSI +FDRR LTS+GVGSPI+KFEGH AAVLCVQWSPDKSSVFG
Sbjct: 346 DWNPHDDNLIITGSADNSIRLFDRRNLTSNGVGSPIYKFEGHKAAVLCVQWSPDKSSVFG 405

Query: 306 SSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV 365
           SSAEDG+LNIWD++K+G+K +    + P   P           K++        H     
Sbjct: 406 SSAEDGLLNIWDYDKVGKKTERA-TRTPAAPPGLFFQHAGHRDKVVD------FHWNAAD 458

Query: 366 CLTMVKV------------LEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403
             T+V V            L+IWRM DLIYRPEEEVLAEL+KFKSH+  C
Sbjct: 459 PWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVIEC 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122490|ref|XP_002330494.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222872428|gb|EEF09559.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/482 (60%), Positives = 333/482 (69%), Gaps = 98/482 (20%)

Query: 1   MKEGRKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY 60
           MKEGRK  + S+DD+YTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY
Sbjct: 1   MKEGRKAQQPSIDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY 60

Query: 61  LSEQ--------------------------------FNEEARSPFVKKFKTIIHPGEVNR 88
           LSEQ                                FNEEARSPFVKK+KTIIHPGEVNR
Sbjct: 61  LSEQANFTDGSVPNTLVIANCDVVKSRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNR 120

Query: 89  IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL---------------- 132
           IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA +S PDL                
Sbjct: 121 IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 180

Query: 133 -----------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLES 181
                      D+ VVLWSIQDH+++ A++P + KS  SGG+  K   K+G   DK  + 
Sbjct: 181 PTEPYVLSGGKDKLVVLWSIQDHITSSASDPAT-KSPGSGGSIIK---KTGDGSDKATDG 236

Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
           PS+G RG Y GHEDTVEDV FCPSSAQEFCSVGDDSCLILWDAR+G++PA+KVE+AHNAD
Sbjct: 237 PSVGPRGIYQGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARAGTSPAIKVERAHNAD 296

Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
           +HCVDWNP D NLILTGSAD S+ MFDRR LTS+GVG P++KFEGH AAVLCVQWSPDK+
Sbjct: 297 LHCVDWNPQDDNLILTGSADTSVCMFDRRNLTSNGVGLPVYKFEGHKAAVLCVQWSPDKA 356

Query: 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG 361
           SVFGSSAEDG+LNIWD+EK+G+K +      P   P+  + +             H  H 
Sbjct: 357 SVFGSSAEDGLLNIWDYEKVGKKTE-----RPTRAPSSPAGLF----------FQHAGHR 401

Query: 362 RLLVCL--------TMVKV------------LEIWRMIDLIYRPEEEVLAELDKFKSHIF 401
             +V          T+V V            L+IWRM DLIYRPE+EVLAEL+KFKSH+ 
Sbjct: 402 DKVVDFHWNASDPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVV 461

Query: 402 GC 403
            C
Sbjct: 462 SC 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530366|ref|XP_003533753.1| PREDICTED: WD-40 repeat-containing protein MSI4-like isoform 2 [Glycine max]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/458 (62%), Positives = 324/458 (70%), Gaps = 84/458 (18%)

Query: 11  SVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ------ 64
           SVD++YTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ      
Sbjct: 60  SVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVP 119

Query: 65  --------------FNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI 110
                         FNEEARSPFVKK+KTIIHPGEVNRIRELPQNSKIVATHTDSPDVL+
Sbjct: 120 NTLVIANCEVVKPRFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLV 179

Query: 111 WDVEAQPNRHAVLGAADSHPDL---------------------------DQSVVLWSIQD 143
           WDVE+QPNRHAVLGA +S PDL                           D++VVLWSI+D
Sbjct: 180 WDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIED 239

Query: 144 HVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC 203
           H+++ A +      + SGG+  K  SKSG   DK  + P++G RG Y GHEDTVEDV FC
Sbjct: 240 HITSAATD------SKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFC 293

Query: 204 PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS 263
           PSSAQEFCSVGDDSCLILWDAR GS+P VKVEKAHNAD+HCVDWNPHD NLILTGSADNS
Sbjct: 294 PSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNS 353

Query: 264 IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323
           + MFDRR LT++GVGSPIHKFEGH AAVLCVQWSPDKSSVFGSSAEDG+LNIWD+EK+G+
Sbjct: 354 VRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 413

Query: 324 KQDYG--ELKYP----IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV----- 372
           K +     +  P      H  +   ++D              H       T+V V     
Sbjct: 414 KIERSGKSISSPPGLFFQHAGHRDKVVD-------------FHWNAYDPWTIVSVSDDCE 460

Query: 373 -------LEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403
                  L+IWRM DLIYRPE+EVLAEL+KFKSH+  C
Sbjct: 461 STGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVAC 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556284|ref|XP_003546456.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/467 (61%), Positives = 324/467 (69%), Gaps = 93/467 (19%)

Query: 11  SVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ------ 64
           SVD++YTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ      
Sbjct: 55  SVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVP 114

Query: 65  -----------------------FNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVAT 101
                                  FNEEARSPFVKK+KTIIHPGEVNRIRELPQNSKIVAT
Sbjct: 115 NTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVAT 174

Query: 102 HTDSPDVLIWDVEAQPNRHAVLGAADSHPDL---------------------------DQ 134
           HTDSPDVL+WDVE+QPNRHAVLGA +S PDL                           D+
Sbjct: 175 HTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 234

Query: 135 SVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHE 194
           +VVLWSI+DH+++ A +      + SGG+  K  SKSG   DK  + P++G RG Y GHE
Sbjct: 235 TVVLWSIEDHITSAATD------SKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHE 288

Query: 195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNL 254
           DTVEDV FCPSSAQEFCSVGDDSCLILWDAR GS+P VKVEKAHNAD+HCVDWNPHD NL
Sbjct: 289 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNL 348

Query: 255 ILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN 314
           ILTGSADNS+ MFDRR LT++GVGSPIHKFEGH AAVLCVQWSPDKSSVFGSSAEDG+LN
Sbjct: 349 ILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLN 408

Query: 315 IWDHEKIGEK--QDYGELKYP----IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT 368
           IWD+EK+G+K  +    +  P      H  +   ++D              H       T
Sbjct: 409 IWDYEKVGKKIERTGKSISSPPGLFFQHAGHRDKVVD-------------FHWNAYDPWT 455

Query: 369 MVKV------------LEIWRMIDLIYRPEEEVLAELDKFKSHIFGC 403
           +V V            L+IWRM DLIYRPE+EVLAEL+KFKSH+  C
Sbjct: 456 IVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVAC 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
TAIR|locus:2134408	487	NFC5 "AT4G29730" [Arabidopsis	0.719	0.601	0.521	1.4e-103
TAIR|locus:2050372	507	FVE [Arabidopsis thaliana (tax	0.724	0.581	0.524	2e-81
ZFIN|ZDB-GENE-030131-445	444	rbb4 "retinoblastoma binding p	0.727	0.666	0.307	4.6e-42
ZFIN|ZDB-GENE-030131-848	426	rbb4l "retinoblastoma binding	0.700	0.669	0.313	7.5e-42
UNIPROTKB|Q5M7K4	425	rbbp4 "Histone-binding protein	0.700	0.670	0.310	9.5e-42
UNIPROTKB|F2Z4M0	425	RBBP4 "Histone-binding protein	0.700	0.670	0.310	1.5e-41
UNIPROTKB|Q3MHL3	425	RBBP4 "Histone-binding protein	0.700	0.670	0.310	1.5e-41
UNIPROTKB|E2QXR8	425	RBBP4 "Uncharacterized protein	0.700	0.670	0.310	1.5e-41
UNIPROTKB|Q09028	425	RBBP4 "Histone-binding protein	0.700	0.670	0.310	1.5e-41
MGI|MGI:1194912	425	Rbbp4 "retinoblastoma binding	0.700	0.670	0.310	1.5e-41

TAIR|locus:2134408 NFC5 "AT4G29730" [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
 Identities = 169/324 (52%), Positives = 218/324 (67%)

Query:    93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-----DQSVVLWSIQDHVSA 147
             P    ++      PD+L+  +  Q +    L    + P +     D+SV+LW+IQDH++ 
Sbjct:   178 PDRYAVLGAPDSRPDLLL--IGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITM 235

Query:   148 LAAE---PGSA-KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC 203
               ++   PGS+ K T  G      + K+GG        PS+G RG Y GH+DTVEDV FC
Sbjct:   236 AGSDSKSPGSSFKQTGEG------SDKTGG--------PSVGPRGIYNGHKDTVEDVAFC 281

Query:   204 PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS 263
             PSSAQEFCSVGDDSCL+LWDAR+G++PA+KVEKAH+AD+HCVDWNPHD NLILTGSADN+
Sbjct:   282 PSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNT 341

Query:   264 IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323
             + +FDRR LTS+GVGSP++KFEGH AAVLCVQWSPDKSSVFGSSAEDG+LNIWD +++G+
Sbjct:   342 VRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGK 401

Query:   324 KQDYGELKYP----IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379
             K +    K P      H  +   ++D    LL    +  +       +     L+IWRM 
Sbjct:   402 KSERAT-KTPDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNC-ESIGGGGTLQIWRMS 459

Query:   380 DLIYRPEEEVLAELDKFKSHIFGC 403
             DLIYRPE+EVL EL+KFKSH+F C
Sbjct:   460 DLIYRPEDEVLTELEKFKSHVFTC 483

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2050372 FVE [Arabidopsis thaliana (taxid:3702)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 169/322 (52%), Positives = 211/322 (65%)

Query:    93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-----DQSVVLWSIQDHVSA 147
             P    ++      PD+++     Q N    L    + P +     D+SVVLWSIQDH++ 
Sbjct:   198 PNRHAVLGAANSRPDLIL--TGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITT 255

Query:   148 LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA 207
             +  +     S +SG     +  K  G G    ESP++G RG Y GHEDTVEDV F P+SA
Sbjct:   256 IGTD-----SKSSG-----SIIKQTGEGTDKNESPTVGPRGVYHGHEDTVEDVAFSPTSA 305

Query:   208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
             QEFCSVGDDSCLILWDAR+G+ P  KVEKAH+AD+HCVDWNPHD NLILTGSADN++ +F
Sbjct:   306 QEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLF 365

Query:   268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY 327
             DRRKLT++GVGSPI+KFEGH AAVLCVQWSPDKSSVFGSSAEDG+LNIWD++++ +K D 
Sbjct:   366 DRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSDR 425

Query:   328 GELKYP----IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK--VLEIWRMIDL 381
                K P      H  +   ++D          +  +      C T      L+IWRM DL
Sbjct:   426 AA-KSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDD---CETTGGGGTLQIWRMSDL 481

Query:   382 IYRPEEEVLAELDKFKSHIFGC 403
             IYRPEEEV+AEL+KFKSH+  C
Sbjct:   482 IYRPEEEVVAELEKFKSHVMTC 503

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0010224 "response to UV-B" evidence=IEP

GO:0046872 "metal ion binding" evidence=IDA

ZFIN|ZDB-GENE-030131-445 rbb4 "retinoblastoma binding protein 4" [Danio rerio (taxid:7955)]

 Score = 356 (130.4 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 101/328 (30%), Positives = 161/328 (49%)

Query:    80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLW 139
             I H GEVNR R +PQN  I+AT T + DVL++D    P++    G  +  PDL     L 
Sbjct:   121 INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSG--ECTPDLR----LR 174

Query:   140 SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199
               Q     L+  P  +    S  A+  +          P E   + A+  + GH   VED
Sbjct:   175 GHQKEGYGLSWNPNLSGCLLS--ASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVED 232

Query:   200 VQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILT 257
             V +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ T
Sbjct:   233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHAVD-AHTAEVNCLSFNPYSEFILAT 291

Query:   258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
             GSAD ++ ++D R L        +H FE H   +  VQWSP   ++  SS  D  LN+WD
Sbjct:   292 GSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

Query:   318 HEKIGEKQ-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC-LTMVK 371
               KIGE+Q     + G  +   IH  +++ + D              +   ++C ++   
Sbjct:   347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP---------NEPWVICSVSEDN 397

Query:   372 VLEIWRMIDLIYRPEE-EVLAELDKFKS 398
             ++++W+M + IY  E+ E  A+ +K+ S
Sbjct:   398 IMQVWQMAENIYNDEDPEGAADTEKYNS 425

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0031497 "chromatin assembly" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0006260 "DNA replication" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-030131-848 rbb4l "retinoblastoma binding protein 4, like" [Danio rerio (taxid:7955)]

 Score = 353 (129.3 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 99/316 (31%), Positives = 154/316 (48%)

Query:    80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLW 139
             I H GEVNR R +PQN  I+AT T + DVL +D    P++    G  D  PDL     L 
Sbjct:   121 INHEGEVNRARYMPQNPCIIATKTPTSDVLAFDYTKHPSKPDPSG--DCSPDLR----LR 174

Query:   140 SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199
               Q     L+  P  + +  S  A+  +          P E   + A+  + GH   VED
Sbjct:   175 GHQKEGYGLSWNPNLSGNLLS--ASDDHTICLWDISGAPKEGKIVDAKTIFTGHTAVVED 232

Query:   200 VQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILT 257
             V +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ T
Sbjct:   233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILAT 291

Query:   258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
             GSAD ++ ++D R L        +H FE H   +  VQWSP   ++  SS  D  LN+WD
Sbjct:   292 GSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

Query:   318 HEKIGEKQ-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC-LTMVK 371
               KIGE+Q     + G  +   IH  +++ + D              +   ++C ++   
Sbjct:   347 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP---------NEPWVICSVSEDN 397

Query:   372 VLEIWRMIDLIYRPEE 387
             ++++W+M + IY  EE
Sbjct:   398 IMQVWQMAENIYNDEE 413

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q5M7K4 rbbp4 "Histone-binding protein RBBP4" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 353 (129.3 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 98/316 (31%), Positives = 156/316 (49%)

Query:    80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLW 139
             I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  + +PDL     L 
Sbjct:   121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LR 174

Query:   140 SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199
               Q     L+  P  + +  S  A+  +          P E   + A+  + GH   VED
Sbjct:   175 GHQKEGYGLSWNPNLSGNLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232

Query:   200 VQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILT 257
             V +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ T
Sbjct:   233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILAT 291

Query:   258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
             GSAD ++ ++D R L        +H FE H   +  VQWSP   ++  SS  D  LN+WD
Sbjct:   292 GSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

Query:   318 HEKIGEKQ-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC-LTMVK 371
               KIGE+Q     + G  +   IH  +++ + D              +   ++C ++   
Sbjct:   347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP---------NEPWVICSVSEDN 397

Query:   372 VLEIWRMIDLIYRPEE 387
             ++++W+M + IY  E+
Sbjct:   398 IMQVWQMAENIYNDED 413

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|F2Z4M0 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 98/316 (31%), Positives = 155/316 (49%)

Query:    80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLW 139
             I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  + +PDL     L 
Sbjct:   121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LR 174

Query:   140 SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199
               Q     L+  P  +    S  A+  +          P E   + A+  + GH   VED
Sbjct:   175 GHQKEGYGLSWNPNLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232

Query:   200 VQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILT 257
             V +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ T
Sbjct:   233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILAT 291

Query:   258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
             GSAD ++ ++D R L        +H FE H   +  VQWSP   ++  SS  D  LN+WD
Sbjct:   292 GSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

Query:   318 HEKIGEKQ-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC-LTMVK 371
               KIGE+Q     + G  +   IH  +++ + D              +   ++C ++   
Sbjct:   347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP---------NEPWVICSVSEDN 397

Query:   372 VLEIWRMIDLIYRPEE 387
             ++++W+M + IY  E+
Sbjct:   398 IMQVWQMAENIYNDED 413

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|Q3MHL3 RBBP4 "Histone-binding protein RBBP4" [Bos taurus (taxid:9913)]

 Score = 351 (128.6 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 98/316 (31%), Positives = 155/316 (49%)

Query:    80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLW 139
             I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  + +PDL     L 
Sbjct:   121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LR 174

Query:   140 SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199
               Q     L+  P  +    S  A+  +          P E   + A+  + GH   VED
Sbjct:   175 GHQKEGYGLSWNPNLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232

Query:   200 VQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILT 257
             V +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ T
Sbjct:   233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILAT 291

Query:   258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
             GSAD ++ ++D R L        +H FE H   +  VQWSP   ++  SS  D  LN+WD
Sbjct:   292 GSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

Query:   318 HEKIGEKQ-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC-LTMVK 371
               KIGE+Q     + G  +   IH  +++ + D              +   ++C ++   
Sbjct:   347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP---------NEPWVICSVSEDN 397

Query:   372 VLEIWRMIDLIYRPEE 387
             ++++W+M + IY  E+
Sbjct:   398 IMQVWQMAENIYNDED 413

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QXR8 RBBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 351 (128.6 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 98/316 (31%), Positives = 155/316 (49%)

Query:    80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLW 139
             I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  + +PDL     L 
Sbjct:   121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LR 174

Query:   140 SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199
               Q     L+  P  +    S  A+  +          P E   + A+  + GH   VED
Sbjct:   175 GHQKEGYGLSWNPNLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232

Query:   200 VQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILT 257
             V +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ T
Sbjct:   233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILAT 291

Query:   258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
             GSAD ++ ++D R L        +H FE H   +  VQWSP   ++  SS  D  LN+WD
Sbjct:   292 GSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

Query:   318 HEKIGEKQ-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC-LTMVK 371
               KIGE+Q     + G  +   IH  +++ + D              +   ++C ++   
Sbjct:   347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP---------NEPWVICSVSEDN 397

Query:   372 VLEIWRMIDLIYRPEE 387
             ++++W+M + IY  E+
Sbjct:   398 IMQVWQMAENIYNDED 413

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q09028 RBBP4 "Histone-binding protein RBBP4" [Homo sapiens (taxid:9606)]

 Score = 351 (128.6 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 98/316 (31%), Positives = 155/316 (49%)

Query:    80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLW 139
             I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  + +PDL     L 
Sbjct:   121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LR 174

Query:   140 SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199
               Q     L+  P  +    S  A+  +          P E   + A+  + GH   VED
Sbjct:   175 GHQKEGYGLSWNPNLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232

Query:   200 VQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILT 257
             V +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ T
Sbjct:   233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILAT 291

Query:   258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
             GSAD ++ ++D R L        +H FE H   +  VQWSP   ++  SS  D  LN+WD
Sbjct:   292 GSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

Query:   318 HEKIGEKQ-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC-LTMVK 371
               KIGE+Q     + G  +   IH  +++ + D              +   ++C ++   
Sbjct:   347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP---------NEPWVICSVSEDN 397

Query:   372 VLEIWRMIDLIYRPEE 387
             ++++W+M + IY  E+
Sbjct:   398 IMQVWQMAENIYNDED 413

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=NAS;IDA

GO:0016589 "NURF complex" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0031497 "chromatin assembly" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=TAS

GO:0034080 "CENP-A containing nucleosome assembly at centromere" evidence=TAS

GO:0016580 "Sin3 complex" evidence=NAS

GO:0042393 "histone binding" evidence=NAS

GO:0042826 "histone deacetylase binding" evidence=IPI

MGI|MGI:1194912 Rbbp4 "retinoblastoma binding protein 4" [Mus musculus (taxid:10090)]

 Score = 351 (128.6 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 98/316 (31%), Positives = 155/316 (49%)

Query:    80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLW 139
             I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  + +PDL     L 
Sbjct:   121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LR 174

Query:   140 SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED 199
               Q     L+  P  +    S  A+  +          P E   + A+  + GH   VED
Sbjct:   175 GHQKEGYGLSWNPNLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232

Query:   200 VQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILT 257
             V +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ T
Sbjct:   233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILAT 291

Query:   258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
             GSAD ++ ++D R L        +H FE H   +  VQWSP   ++  SS  D  LN+WD
Sbjct:   292 GSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

Query:   318 HEKIGEKQ-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC-LTMVK 371
               KIGE+Q     + G  +   IH  +++ + D              +   ++C ++   
Sbjct:   347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP---------NEPWVICSVSEDN 397

Query:   372 VLEIWRMIDLIYRPEE 387
             ++++W+M + IY  E+
Sbjct:   398 IMQVWQMAENIYNDED 413

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=ISO;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016581 "NuRD complex" evidence=ISO;IDA

GO:0016589 "NURF complex" evidence=ISO

GO:0031497 "chromatin assembly" evidence=ISO

GO:0033186 "CAF-1 complex" evidence=ISO

GO:0035098 "ESC/E(Z) complex" evidence=ISO;IDA

GO:0042826 "histone deacetylase binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22607	MSI4_ARATH	No assigned EC number	0.5952	0.9557	0.7672	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NFC907 nucleosome/chromatin assembly factor group (466 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	407
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-18
pfam12265	73	pfam12265, CAF1C_H4-bd, Histone-binding protein RB	1e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-12
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	7e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.001
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.001
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.6 bits (233), Expect = 1e-21
 Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 34/255 (13%)

Query: 82  HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG------AADSHPDL--- 132
           H G V  +      + + +  +D   + +WD+E       + G      +    PD    
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDK-TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL 108

Query: 133 -----DQSVVLWSIQD--HVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPL---ESP 182
                D+++ +W ++    ++ L        S A    +      +  + D  +   +  
Sbjct: 109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA---FSPDGTFVASSSQDGTIKLWDLR 165

Query: 183 SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI 242
           +        GH   V  V F P   ++  S   D  + LWD  +G    +   + H   +
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKC--LGTLRGHENGV 222

Query: 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS 302
           + V ++P    L+ +GS D +I ++D R       G  +    GH+ +V  + WSPD   
Sbjct: 223 NSVAFSPDG-YLLASGSEDGTIRVWDLRT------GECVQTLSGHTNSVTSLAWSPDGKR 275

Query: 303 VFGSSAEDGILNIWD 317
           +  S + DG + IWD
Sbjct: 276 LA-SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 11/153 (7%)

Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
             GH   V  V F P   +   S   D  + +WD  +G    +   + H   ++ V ++P
Sbjct: 89  LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSP 145

Query: 250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE 309
                + + S D +I ++D R       G  +    GH+  V  V +SPD   +  SS+ 
Sbjct: 146 DG-TFVASSSQDGTIKLWDLRT------GKCVATLTGHTGEVNSVAFSPDGEKLL-SSSS 197

Query: 310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342
           DG + +WD             +  +   A+S D
Sbjct: 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230

Length = 289

>gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C of CAF1 complex

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKN--RQRLYLSEQ 64
          ++ Y  WK   P LYD L  H L WPSLS  W P L +   +    QRL L  Q
Sbjct: 1  NEEYELWKKNDPFLYDMLHTHALEWPSLSFDWLPDLLKGDNRYPHTQRLLLGTQ 54

The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six. Length = 73

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 74.0 bits (180), Expect = 3e-14
 Identities = 62/276 (22%), Positives = 102/276 (36%), Gaps = 33/276 (11%)

Query: 65  FNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP------- 117
            +     P +       H   +  I   P    +++  +D   + +WD++          
Sbjct: 47  SDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDG-TIKLWDLDNGEKLIKSLE 105

Query: 118 --NRHAVLGAADSHPD----------LDQSVVLWSIQD---HVSALAAEPGSAKSTASGG 162
             +  +V   A S PD          LD +V LW +      +  L     S  S A   
Sbjct: 106 GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165

Query: 163 ANSKNASKSGGNGDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLIL 221
                AS S  +G   L     G     L GH D V  + F P       S   D  + L
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225

Query: 222 WDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI 281
           WD  +G      +    ++ +     +    +L+ +GS+D +I ++D R        S +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSS-----SSLL 277

Query: 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
               GHS++VL V +SPD   +  S + DG + +WD
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWD 312

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.1 bits (167), Expect = 9e-13
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 11/131 (8%)

Query: 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD 246
           R    GH   V  V F P   +   +   D  + +WD  +G    ++  K H   +  V 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVA 58

Query: 247 WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306
            +      + +GS+D +I ++D         G  +    GH++ V  V +SPD   +  S
Sbjct: 59  ASADG-TYLASGSSDKTIRLWDLET------GECVRTLTGHTSYVSSVAFSPDGRILSSS 111

Query: 307 SAEDGILNIWD 317
           S  D  + +WD
Sbjct: 112 SR-DKTIKVWD 121

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.0 bits (167), Expect = 1e-12
 Identities = 56/261 (21%), Positives = 95/261 (36%), Gaps = 34/261 (13%)

Query: 82  HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSI 141
           H   V+ +   P    ++A+ +    + +WD+       + L     H D    V  +S 
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL---SGHSD--SVVSSFSP 251

Query: 142 QDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQ 201
              + A  +  G+ +      ++S   +                      GH  +V  V 
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRT--------------------LSGHSSSVLSVA 291

Query: 202 FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD 261
           F P       S   D  + LWD  +G   +    K H   +  + ++P    L+  GS D
Sbjct: 292 FSPDGKLLA-SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350

Query: 262 NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI 321
            +I ++D R       G P+   EGHS  VL V +SPD   V  S + DG + +WD    
Sbjct: 351 GTIRLWDLRT------GKPLKTLEGHS-NVLSVSFSPDG-RVVSSGSTDGTVRLWDLSTG 402

Query: 322 GEKQDYGELKYPIIHPAYSSD 342
              ++       +    +S D
Sbjct: 403 SLLRNLDGHTSRVTSLDFSPD 423

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.4 bits (163), Expect = 3e-12
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 8/155 (5%)

Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
             GHED++  + F P   +   S   D  + LWD  +G      +E  H++ +  +  + 
Sbjct: 61  LRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 250 HDVNLILT--GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307
            D N IL    S D ++ ++D         G  I   EGHS +V  + +SPD   +   S
Sbjct: 120 PDGNSILLASSSLDGTVKLWD-----LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174

Query: 308 AEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342
           + DG + +WD               P+   A+S D
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
           G  +   +GH+  V  V +SPD  ++  S ++DG + +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
           G  +   +GH+  V  V +SPD      S ++DG + +WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFD 268
           ++  K H   +  V ++P   NL+ +GS D ++ ++D
Sbjct: 4   LRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFD 268
           K H   +  V ++P     + +GS D +I ++D
Sbjct: 9   KGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 15/140 (10%)

Query: 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR--KLTSDGVGSPIHKFEGH 287
           P +K+ K H + I  + +NP    ++ +GS D +I +++      +   +  P    +GH
Sbjct: 66  PVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124

Query: 288 SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHP-AYSSDMLDI 346
              +  + W+P    +  SS  D  +NIWD E   EK+      + I  P   SS   +I
Sbjct: 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN--EKR-----AFQINMPKKLSSLKWNI 177

Query: 347 ETKLL--TSIG--MHLIHGR 362
           +  LL  T +G  MH+I  R
Sbjct: 178 KGNLLSGTCVGKHMHIIDPR 197

Length = 568

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 241 DIHCVDWNPHDVNLILTGSADNSIHMFD--RRKLTSDGVGSPIHKFEGHSAAVLCVQWSP 298
            I  V +NP D   + T S D +I  +      LT + +  PI   +GH+  V  V + P
Sbjct: 77  PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-ISDPIVHLQGHTKKVGIVSFHP 135

Query: 299 DKSSVFGSSAEDGILNIWDHEK 320
              +V  S+  D ++N+WD E+
Sbjct: 136 SAMNVLASAGADMVVNVWDVER 157

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH   V  V F PS+     S G D  + +WD   G   AV+V K H+  I  ++WN  D
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEWN-LD 179

Query: 252 VNLILTGSADNSIHMFDRRKLT 273
            +L+ T S D  +++ D R  T
Sbjct: 180 GSLLCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 280 PIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
                +GH+  V CV +SPD   +  + + DG + +WD
Sbjct: 1   LRRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWD 37

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	407
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG1334	559	consensus WD40 repeat protein [General function pr	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
KOG2096	420	consensus WD40 repeat protein [General function pr	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.65
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.65
COG2319	466	FOG: WD40 repeat [General function prediction only	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.64
KOG2321	703	consensus WD40 repeat protein [General function pr	99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.63
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG1963	792	consensus WD40 repeat protein [General function pr	99.57
KOG4547	541	consensus WD40 repeat-containing protein [General	99.56
PRK04922	433	tolB translocation protein TolB; Provisional	99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
KOG1310	758	consensus WD40 repeat protein [General function pr	99.55
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.54
KOG4227	609	consensus WD40 repeat protein [General function pr	99.53
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.53
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.52
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.51
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.51
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.5
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.49
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.49
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.49
KOG2139	445	consensus WD40 repeat protein [General function pr	99.46
PRK05137	435	tolB translocation protein TolB; Provisional	99.46
KOG1963	792	consensus WD40 repeat protein [General function pr	99.45
PRK01742	429	tolB translocation protein TolB; Provisional	99.43
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.42
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.42
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.38
PRK11028	330	6-phosphogluconolactonase; Provisional	99.37
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.36
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.32
KOG1334	559	consensus WD40 repeat protein [General function pr	99.31
PRK02889	427	tolB translocation protein TolB; Provisional	99.29
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.27
KOG4547	541	consensus WD40 repeat-containing protein [General	99.27
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.27
PRK05137	435	tolB translocation protein TolB; Provisional	99.26
PRK04922	433	tolB translocation protein TolB; Provisional	99.23
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.22
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.21
PRK03629	429	tolB translocation protein TolB; Provisional	99.2
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.17
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.16
KOG2314	698	consensus Translation initiation factor 3, subunit	99.14
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.13
KOG2315	566	consensus Predicted translation initiation factor	99.11
PF12265	74	CAF1C_H4-bd: Histone-binding protein RBBP4 or subu	99.09
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.08
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.08
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.08
PRK01029	428	tolB translocation protein TolB; Provisional	99.07
KOG2321	703	consensus WD40 repeat protein [General function pr	99.07
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.05
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.05
KOG2315	566	consensus Predicted translation initiation factor	99.03
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.02
PRK01029	428	tolB translocation protein TolB; Provisional	99.02
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.01
PRK00178	430	tolB translocation protein TolB; Provisional	98.95
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.95
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.93
PRK04792	448	tolB translocation protein TolB; Provisional	98.93
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.9
KOG2695	425	consensus WD40 repeat protein [General function pr	98.86
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.85
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.84
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.8
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.77
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.77
KOG2695	425	consensus WD40 repeat protein [General function pr	98.77
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.74
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.74
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.69
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.69
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.68
PRK04043	419	tolB translocation protein TolB; Provisional	98.68
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.67
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.64
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.64
COG4946	668	Uncharacterized protein related to the periplasmic	98.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.61
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.6
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.59
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.55
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.54
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.5
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.48
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.47
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.44
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.44
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.44
COG4946	668	Uncharacterized protein related to the periplasmic	98.4
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.4
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.29
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
PRK04043	419	tolB translocation protein TolB; Provisional	98.24
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.2
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.18
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.16
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.15
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.09
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.06
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.03
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.0
KOG2314	698	consensus Translation initiation factor 3, subunit	97.99
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.96
PRK02888	635	nitrous-oxide reductase; Validated	97.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.92
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.81
KOG3621	726	consensus WD40 repeat-containing protein [General	97.71
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.71
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.68
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.68
KOG2395	644	consensus Protein involved in vacuole import and d	97.66
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.63
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.63
KOG3621	726	consensus WD40 repeat-containing protein [General	97.61
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.6
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.55
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.49
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.46
KOG2444	238	consensus WD40 repeat protein [General function pr	97.41
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.37
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.37
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.34
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.27
KOG2444	238	consensus WD40 repeat protein [General function pr	97.13
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.03
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.94
COG3391	381	Uncharacterized conserved protein [Function unknow	96.93
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.92
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.9
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.86
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.83
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.73
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.68
COG3391	381	Uncharacterized conserved protein [Function unknow	96.67
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.65
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.61
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.54
KOG2395	644	consensus Protein involved in vacuole import and d	96.54
PRK02888	635	nitrous-oxide reductase; Validated	96.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.3
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.02
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.97
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.87
PRK13616	591	lipoprotein LpqB; Provisional	95.82
PHA02713	557	hypothetical protein; Provisional	95.62
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.6
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.45
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.43
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.41
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.38
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.28
COG5167	776	VID27 Protein involved in vacuole import and degra	95.13
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.79
PHA02713	557	hypothetical protein; Provisional	94.43
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.4
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.38
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.27
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.24
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.2
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.09
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.07
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.07
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.96
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.93
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.74
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.69
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.45
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.39
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.39
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.39
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.35
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.96
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.89
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.75
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.63
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.52
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.39
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.26
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.18
PHA03098	534	kelch-like protein; Provisional	91.79
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.74
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.5
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.25
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.22
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	90.77
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.41
KOG2247	615	consensus WD40 repeat-containing protein [General	89.83
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.4
PRK13616	591	lipoprotein LpqB; Provisional	89.29
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.25
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.19
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.63
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.46
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.29
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.01
KOG2247	615	consensus WD40 repeat-containing protein [General	87.9
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.26
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	87.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.42
PHA03098	534	kelch-like protein; Provisional	86.33
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.28
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.16
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	86.04
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.02
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	85.8
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.71
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.47
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	84.9
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	84.74
PRK13684	334	Ycf48-like protein; Provisional	84.56
COG5276	370	Uncharacterized conserved protein [Function unknow	83.24
PHA02790	480	Kelch-like protein; Provisional	82.72
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	82.29
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.09
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	81.58
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	81.15
PRK10115	686	protease 2; Provisional	80.44
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.41
COG5167	776	VID27 Protein involved in vacuole import and degra	80.39
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	80.13

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-48  Score=334.90  Aligned_cols=334  Identities=36%  Similarity=0.633  Sum_probs=264.7

Q ss_pred             cccCcchhhhhhhhccCceEEEeeeecccCCCeeEEEEeec--ccccCccceEEEEeec---------------------
Q 046899            7 GMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ--LEQATYKNRQRLYLSE---------------------   63 (407)
Q Consensus         7 ~~~~~~~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~--~~~~~~~~~~~i~~~~---------------------   63 (407)
                      .+.+.++|+|++||+|.|+||+++..|.++||++++||+|+  ...+.+...+|+++++                     
T Consensus        11 ~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~   90 (422)
T KOG0264|consen   11 LEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDD   90 (422)
T ss_pred             hccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcc
Confidence            44558899999999999999999999999999999999997  4444555568888888                     


Q ss_pred             ------ccCcc--------cCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc--------
Q 046899           64 ------QFNEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA--------  121 (407)
Q Consensus        64 ------~~~~~--------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~--------  121 (407)
                            .++.+        .....++..+.+.|.++|+.+++.|++..++||++..+.|.|||..+......        
T Consensus        91 ~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pd  170 (422)
T KOG0264|consen   91 AQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPD  170 (422)
T ss_pred             cccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCc
Confidence                  11111        12236677777889999999999999999999999999999999987654332        


Q ss_pred             --ccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-------ceeeEee
Q 046899          122 --VLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-------ARGKYLG  192 (407)
Q Consensus       122 --~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-------~~~~~~~  192 (407)
                        +.+|..     .|.-..|+....                    ..+++++.++.+.+||+....       +...+.+
T Consensus       171 l~L~gH~~-----eg~glsWn~~~~--------------------g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~  225 (422)
T KOG0264|consen  171 LRLKGHEK-----EGYGLSWNRQQE--------------------GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG  225 (422)
T ss_pred             eEEEeecc-----cccccccccccc--------------------eeEeeccCCCcEEEEeccccccCCccccceEEeec
Confidence              223322     122233433321                    236778888888888875433       3566789


Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL  272 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  272 (407)
                      |+..|..++|++....+|++++.|+.+.|||+|+..........+|.++|+|++|+|.++.+||||+.|++|++||+|++
T Consensus       226 h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL  305 (422)
T KOG0264|consen  226 HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL  305 (422)
T ss_pred             CCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence            99999999999998899999999999999999964333567778999999999999999999999999999999999997


Q ss_pred             CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc--------------ccCCCcccCCC
Q 046899          273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY--------------GELKYPIIHPA  338 (407)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~--------------~~~~~~v~~~~  338 (407)
                           .+++.++.+|+..|.+|.|+|+...+|||++.|+.+.|||+.+....+.-              .+|...|....
T Consensus       306 -----~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs  380 (422)
T KOG0264|consen  306 -----NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS  380 (422)
T ss_pred             -----ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccccc
Confidence                 47999999999999999999999999999999999999999986665541              23334444444


Q ss_pred             CcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeeccccccCChHH
Q 046899          339 YSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRMIDLIYRPEEE  388 (407)
Q Consensus       339 ~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~~~~~~~~~~  388 (407)
                      |+|.                  .. .|++.+.|+.++||+..++++.++.+
T Consensus       381 Wnp~------------------ePW~I~SvaeDN~LqIW~~s~~i~~~e~~  413 (422)
T KOG0264|consen  381 WNPN------------------EPWTIASVAEDNILQIWQMAENIYNPEDP  413 (422)
T ss_pred             CCCC------------------CCeEEEEecCCceEEEeeccccccCcccc
Confidence            4443                  22 35588999999999999888776554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-47  Score=320.88  Aligned_cols=309  Identities=20%  Similarity=0.294  Sum_probs=265.9

Q ss_pred             cCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899           35 LVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW  111 (407)
Q Consensus        35 ~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  111 (407)
                      +.-|.++++|.|   .+++|+.|.++|||   +.  +...|   .....+|..-|.|++|+| +++.||+|+.||+|++|
T Consensus       114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~W---D~--~TeTp---~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLW---DL--DTETP---LFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLW  184 (480)
T ss_pred             CCCcEEEEEecCCCceEEecCCCceEEee---cc--CCCCc---ceeecCCccEEEEEEECC-CcchhhccccCCeEEEe
Confidence            566899999999   79999999999999   22  22222   334448999999999999 99999999999999999


Q ss_pred             eCcCCCCc-ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899          112 DVEAQPNR-HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY  190 (407)
Q Consensus       112 d~~~~~~~-~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  190 (407)
                      |..++++. ..+.+|...+..     ..|..-             ...   .-+..+++++.||.++|||...+.++..+
T Consensus       185 dpktg~~~g~~l~gH~K~It~-----Lawep~-------------hl~---p~~r~las~skDg~vrIWd~~~~~~~~~l  243 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITA-----LAWEPL-------------HLV---PPCRRLASSSKDGSVRIWDTKLGTCVRTL  243 (480)
T ss_pred             cCCCCCcccccccCcccceeE-----Eeeccc-------------ccC---CCccceecccCCCCEEEEEccCceEEEEe
Confidence            99988754 566777665322     122211             111   12235888999999999999999999999


Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec-----------C----------
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN-----------P----------  249 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~-----------~----------  249 (407)
                      .+|+.+|+|++|--+|  ++++|+.|++|++|+...+.  +...+.+|...|+.++.+           |          
T Consensus       244 sgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se  319 (480)
T KOG0271|consen  244 SGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE  319 (480)
T ss_pred             ccCccceEEEEEcCCc--eEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence            9999999999998766  89999999999999999988  788999999999999877           2          


Q ss_pred             --------------CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          250 --------------HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       250 --------------~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                                    +.+..|++|++|.++.+|+....     .+++..+.+|...|+.+.|+||++++ |+++.|+.|++
T Consensus       320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-----kkpi~rmtgHq~lVn~V~fSPd~r~I-ASaSFDkSVkL  393 (480)
T KOG0271|consen  320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-----KKPITRMTGHQALVNHVSFSPDGRYI-ASASFDKSVKL  393 (480)
T ss_pred             HHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-----ccchhhhhchhhheeeEEECCCccEE-EEeecccceee
Confidence                          12345999999999999998764     47899999999999999999999976 89999999999


Q ss_pred             EeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhh
Q 046899          316 WDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK  395 (407)
Q Consensus       316 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  395 (407)
                      ||-++++.+.+|.+|-.+|+.++||.|                  ...|++||.|+++++|++.      +..+...+.|
T Consensus       394 W~g~tGk~lasfRGHv~~VYqvawsaD------------------sRLlVS~SkDsTLKvw~V~------tkKl~~DLpG  449 (480)
T KOG0271|consen  394 WDGRTGKFLASFRGHVAAVYQVAWSAD------------------SRLLVSGSKDSTLKVWDVR------TKKLKQDLPG  449 (480)
T ss_pred             eeCCCcchhhhhhhccceeEEEEeccC------------------ccEEEEcCCCceEEEEEee------eeeecccCCC
Confidence            999999999999999999999999999                  7889999999999999999      8889999999


Q ss_pred             cccceeEeeccC
Q 046899          396 FKSHIFGCDKSC  407 (407)
Q Consensus       396 h~~~v~~~~~s~  407 (407)
                      |.+.|++|+|||
T Consensus       450 h~DEVf~vDwsp  461 (480)
T KOG0271|consen  450 HADEVFAVDWSP  461 (480)
T ss_pred             CCceEEEEEecC
Confidence            999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-44  Score=307.14  Aligned_cols=282  Identities=18%  Similarity=0.255  Sum_probs=251.4

Q ss_pred             ccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEE
Q 046899           34 NLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVL  109 (407)
Q Consensus        34 ~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~  109 (407)
                      .-+-|...|.|.+   .++|++++|..++|..+      ..  .....+.+|.+.|.++.|+|. ++.-+|||+.||+|+
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~------~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk  244 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP------QC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK  244 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecC------Cc--ceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence            3456888888866   49999999999999443      22  335566799999999999996 477899999999999


Q ss_pred             EEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee
Q 046899          110 IWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK  189 (407)
Q Consensus       110 vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~  189 (407)
                      +|++.....+..+.+|...+.                       .+.|.+.|.   .+++++.|.+-++||+.++..+..
T Consensus       245 lw~~~~e~~l~~l~gH~~RVs-----------------------~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL~  298 (459)
T KOG0272|consen  245 LWKLSQETPLQDLEGHLARVS-----------------------RVAFHPSGK---FLGTASFDSTWRLWDLETKSELLL  298 (459)
T ss_pred             eeccCCCcchhhhhcchhhhe-----------------------eeeecCCCc---eeeecccccchhhcccccchhhHh
Confidence            999999888888888765421                       123334444   489999999999999999999999


Q ss_pred             EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                      ..+|...|.+++|+|+| .++++|+.|..-+|||+|++.  ++..+.+|..+|.+|+|+| +|..||||+.|++++|||+
T Consensus       299 QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDL  374 (459)
T KOG0272|consen  299 QEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDL  374 (459)
T ss_pred             hcccccccceeEecCCC-ceeeccCccchhheeecccCc--EEEEecccccceeeEeECC-CceEEeecCCCCcEEEeee
Confidence            99999999999999999 899999999999999999999  8999999999999999999 9999999999999999999


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETK  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~  349 (407)
                      |.      ...+.++.+|..-|+.|+|+|...+.|+|++.|+++++|..++..+++++.+|.+.|.+++.++|       
T Consensus       375 R~------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d-------  441 (459)
T KOG0272|consen  375 RM------RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPD-------  441 (459)
T ss_pred             cc------cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccC-------
Confidence            99      78899999999999999999965556789999999999999999999999999999999999999       


Q ss_pred             ceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899          350 LLTSIGMHLIHGRLLVCLTMVKVLEIWR  377 (407)
Q Consensus       350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd  377 (407)
                                 +..|++++.|.++++|.
T Consensus       442 -----------~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  442 -----------SQAIATSSFDRTIKLWR  458 (459)
T ss_pred             -----------CceEEEeccCceeeecc
Confidence                       89999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-44  Score=307.25  Aligned_cols=269  Identities=22%  Similarity=0.283  Sum_probs=244.2

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA  159 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  159 (407)
                      ++-+.+|..+.|++ +++.||||+.+|.++||+.........+.+|...+.+.     .|           +|..     
T Consensus       172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~-----~f-----------hP~~-----  229 (459)
T KOG0272|consen  172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAA-----VF-----------HPVD-----  229 (459)
T ss_pred             ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeE-----EE-----------ccCC-----
Confidence            46778999999998 89999999999999999999998888888887653221     11           1111     


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                         .+..+++++.||++++|+..+..+++.+.+|...|..++|+|+| .+|+|++.|.+-++||++++.  ......+|.
T Consensus       230 ---~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~--ElL~QEGHs  303 (459)
T KOG0272|consen  230 ---SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKS--ELLLQEGHS  303 (459)
T ss_pred             ---CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccch--hhHhhcccc
Confidence               12357889999999999999999999999999999999999999 899999999999999999988  667778999


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ..|.+++|.| +|.+++||+.|..-+|||+|+      +.++..+.+|..+|.+|+|+|+|.+| ||||.|++++|||++
T Consensus       304 ~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt------gr~im~L~gH~k~I~~V~fsPNGy~l-ATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  304 KGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT------GRCIMFLAGHIKEILSVAFSPNGYHL-ATGSSDNTCKVWDLR  375 (459)
T ss_pred             cccceeEecC-CCceeeccCccchhheeeccc------CcEEEEecccccceeeEeECCCceEE-eecCCCCcEEEeeec
Confidence            9999999999 999999999999999999999      99999999999999999999999865 899999999999999


Q ss_pred             CCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccc
Q 046899          320 KIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSH  399 (407)
Q Consensus       320 ~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~  399 (407)
                      ....+..+++|..-|+.+.|+|..                 +.+|++++.|.+++||.-.      ++++++++.||.+.
T Consensus       376 ~r~~ly~ipAH~nlVS~Vk~~p~~-----------------g~fL~TasyD~t~kiWs~~------~~~~~ksLaGHe~k  432 (459)
T KOG0272|consen  376 MRSELYTIPAHSNLVSQVKYSPQE-----------------GYFLVTASYDNTVKIWSTR------TWSPLKSLAGHEGK  432 (459)
T ss_pred             ccccceecccccchhhheEecccC-----------------CeEEEEcccCcceeeecCC------CcccchhhcCCccc
Confidence            999999999999999999999863                 8899999999999999998      89999999999999


Q ss_pred             eeEeeccC
Q 046899          400 IFGCDKSC  407 (407)
Q Consensus       400 v~~~~~s~  407 (407)
                      |.+|+.|+
T Consensus       433 V~s~Dis~  440 (459)
T KOG0272|consen  433 VISLDISP  440 (459)
T ss_pred             eEEEEecc
Confidence            99999874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-42  Score=292.45  Aligned_cols=269  Identities=20%  Similarity=0.307  Sum_probs=236.0

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      ...||.++|.|+.|+| ++..||||+.|.++|+||+.+.....+..+|...+.+                          
T Consensus       110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlc--------------------------  162 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLC--------------------------  162 (480)
T ss_pred             ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEE--------------------------
Confidence            3457999999999999 9999999999999999999999888888888765321                          


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCce-eeEeecccCEEEEEECCCC----CcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGAR-GKYLGHEDTVEDVQFCPSS----AQEFCSVGDDSCLILWDARSGSTPAV  232 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~v~~l~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~  232 (407)
                      ++-.+....+++|+.+|+|++||.++++++ ..+.+|...|++++|.|-.    ..+||+++.||.|+|||+..+.  ++
T Consensus       163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~--~~  240 (480)
T KOG0271|consen  163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT--CV  240 (480)
T ss_pred             EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--EE
Confidence            112223346899999999999999998875 5688999999999998732    2689999999999999999888  88


Q ss_pred             eeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc-----------CCCC
Q 046899          233 KVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS-----------PDKS  301 (407)
Q Consensus       233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----------~~~~  301 (407)
                      ..+.+|+.+|+|+.|.  +..++++|+.|++|++|+...      +.+.+++++|...|+.++.+           |.+.
T Consensus       241 ~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~d------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~  312 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALD------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR  312 (480)
T ss_pred             EEeccCccceEEEEEc--CCceEEecCCCceEEEEEccc------hhHHHhhcccchheeeeeccchhhhhccccccccc
Confidence            9999999999999997  467999999999999999998      89999999999999999876           3333


Q ss_pred             C------------------------EEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCCCCcCcchhccccceeeeeE
Q 046899          302 S------------------------VFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGM  356 (407)
Q Consensus       302 ~------------------------ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~  356 (407)
                      +                        -+++|++|.++.+|+....+ .+..+.+|..-|..+.||||              
T Consensus       313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd--------------  378 (480)
T KOG0271|consen  313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD--------------  378 (480)
T ss_pred             cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC--------------
Confidence            3                        24799999999999987665 56788899999999999999              


Q ss_pred             eeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          357 HLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       357 ~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                          +.+|+++|+|..|++||-.      +|+.+.+|+||-+.|+.|+||.
T Consensus       379 ----~r~IASaSFDkSVkLW~g~------tGk~lasfRGHv~~VYqvawsa  419 (480)
T KOG0271|consen  379 ----GRYIASASFDKSVKLWDGR------TGKFLASFRGHVAAVYQVAWSA  419 (480)
T ss_pred             ----ccEEEEeecccceeeeeCC------CcchhhhhhhccceeEEEEecc
Confidence                9999999999999999999      8999999999999999999984

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.5e-39  Score=254.39  Aligned_cols=293  Identities=18%  Similarity=0.276  Sum_probs=242.1

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCC-CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC--ccccc
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHP-GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN--RHAVL  123 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--~~~~~  123 (407)
                      .+++++||.++|+|         ......+.+.+.|. +.|+.+...| +++.||+++. ..||+||+++...  +..+.
T Consensus        12 iLvsA~YDhTIRfW---------qa~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e   80 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFW---------QALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFE   80 (311)
T ss_pred             EEEeccCcceeeee---------ehhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEe
Confidence            48899999999999         34456688888887 6799999999 8888998887 6999999998753  23333


Q ss_pred             CcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEEC
Q 046899          124 GAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC  203 (407)
Q Consensus       124 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~  203 (407)
                      +|...                          +....+........+++.||+++|||+....+.+.++ |..+|+++..+
T Consensus        81 ~h~kN--------------------------VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlh  133 (311)
T KOG0315|consen   81 GHTKN--------------------------VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLH  133 (311)
T ss_pred             ccCCc--------------------------eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEec
Confidence            33221                          1222222333457889999999999999977777775 77999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee
Q 046899          204 PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK  283 (407)
Q Consensus       204 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~  283 (407)
                      |.. ..|++|..+|.|++||+.+..... .....-...|.++...| +|.+++.+...|..++|++-........+|+..
T Consensus       134 pnQ-teLis~dqsg~irvWDl~~~~c~~-~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k  210 (311)
T KOG0315|consen  134 PNQ-TELISGDQSGNIRVWDLGENSCTH-ELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHK  210 (311)
T ss_pred             CCc-ceEEeecCCCcEEEEEccCCcccc-ccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhh
Confidence            998 689999999999999999876322 22334457899999999 999999999999999999876443333678889


Q ss_pred             ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC-CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccc
Q 046899          284 FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI-GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR  362 (407)
Q Consensus       284 ~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~  362 (407)
                      ++.|+..+....+||++++| |++|.|.+++||+++.. +....+.+|...++..+||.|                  +.
T Consensus       211 ~~ah~~~il~C~lSPd~k~l-at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d------------------g~  271 (311)
T KOG0315|consen  211 FQAHNGHILRCLLSPDVKYL-ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD------------------GE  271 (311)
T ss_pred             eecccceEEEEEECCCCcEE-EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC------------------cc
Confidence            99999999999999999976 89999999999999988 666788899999999999999                  99


Q ss_pred             eeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899          363 LLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       363 ~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~  405 (407)
                      +|++++.|..+|+|++.      .++.++.+.||...-.|++.
T Consensus       272 YlvTassd~~~rlW~~~------~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  272 YLVTASSDHTARLWDLS------AGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             EEEecCCCCceeecccc------cCceeeecCCcccccEEEEe
Confidence            99999999999999999      89999999999888777764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.2e-38  Score=257.01  Aligned_cols=271  Identities=20%  Similarity=0.298  Sum_probs=232.9

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CC--------CCCcEEEEecc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PD--------LDQSVVLWSIQ  142 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~--------~d~~i~~w~~~  142 (407)
                      ..+.+|.+.|.++.|++ +.++|++++.||.+.|||.-+......+.-....+      |.        +|....+|++.
T Consensus        49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            45568999999999999 89999999999999999988776554443222111      11        18899999988


Q ss_pred             cc--------ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe
Q 046899          143 DH--------VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG  214 (407)
Q Consensus       143 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~  214 (407)
                      ..        .+.+..|...+....+-. +..+++++.|.++.+||+++++.++.+.+|.+.|.++.+.|..++.|++|+
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~  206 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG  206 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence            54        234556666555444444 677899999999999999999999999999999999999995449999999


Q ss_pred             CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEE
Q 046899          215 DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVL  292 (407)
Q Consensus       215 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~  292 (407)
                      -|+..++||+|.+.  +.+.+.+|...|++++|.| +|.-|++|+.|+++++||+|.      ...+..+..  ...+|+
T Consensus       207 cD~~aklWD~R~~~--c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRa------D~~~a~ys~~~~~~git  277 (343)
T KOG0286|consen  207 CDKSAKLWDVRSGQ--CVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRA------DQELAVYSHDSIICGIT  277 (343)
T ss_pred             cccceeeeeccCcc--eeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecC------CcEEeeeccCcccCCce
Confidence            99999999999998  8999999999999999999 999999999999999999999      667776653  346899


Q ss_pred             EEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899          293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV  372 (407)
Q Consensus       293 ~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  372 (407)
                      +++||..|+.|| +|..|.++.+||.-+++....+.+|+..|+++..+||                  +-.+++||=|.+
T Consensus       278 Sv~FS~SGRlLf-agy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D------------------G~av~TgSWDs~  338 (343)
T KOG0286|consen  278 SVAFSKSGRLLF-AGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD------------------GMAVATGSWDST  338 (343)
T ss_pred             eEEEcccccEEE-eeecCCceeEeeccccceEEEeeccCCeeEEEEECCC------------------CcEEEecchhHh
Confidence            999999999765 8899999999999999999999999999999999999                  888999999999


Q ss_pred             EEEee
Q 046899          373 LEIWR  377 (407)
Q Consensus       373 i~iwd  377 (407)
                      +|||.
T Consensus       339 lriW~  343 (343)
T KOG0286|consen  339 LRIWA  343 (343)
T ss_pred             eeecC
Confidence            99994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-38  Score=290.20  Aligned_cols=283  Identities=21%  Similarity=0.335  Sum_probs=240.7

Q ss_pred             ccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC-CCCCC---CCcEEEEeccc
Q 046899           68 EARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD-SHPDL---DQSVVLWSIQD  143 (407)
Q Consensus        68 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~---d~~i~~w~~~~  143 (407)
                      .+..|.+-......-...++|..|++ ++.+||.|-.|..|++|.+...+.. .+..... ..++.   |-.+.+.|.+.
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~l~~~d~~sad~~~~~~D~~~  440 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLK-KLKDASDLSNIDTESADVDVDMLDDDS  440 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhc-cccchhhhccccccccchhhhhccccC
Confidence            44566666666666667899999998 8889999999999999999854321 2211110 00100   22234444443


Q ss_pred             c--ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEE
Q 046899          144 H--VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLIL  221 (407)
Q Consensus       144 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~i  221 (407)
                      .  ...+..|.+.+.-....+....+++++.|+++|+|.+.+..++..+++|..+|.++.|+|.| .+|||++.|++.++
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArL  519 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARL  519 (707)
T ss_pred             CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeee
Confidence            3  33567777777777777777889999999999999999999999999999999999999999 99999999999999


Q ss_pred             EEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC
Q 046899          222 WDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       222 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  301 (407)
                      |......  ..+.+.+|.+.|.|+.|+| +.++++||+.|.+||+||+.+      +..++.|.+|.++|.+++|+|+|+
T Consensus       520 Ws~d~~~--PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~------G~~VRiF~GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  520 WSTDHNK--PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVST------GNSVRIFTGHKGPVTALAFSPCGR  590 (707)
T ss_pred             eecccCC--chhhhcccccccceEEECC-cccccccCCCCceEEEEEcCC------CcEEEEecCCCCceEEEEEcCCCc
Confidence            9998876  6888999999999999999 999999999999999999999      999999999999999999999999


Q ss_pred             CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899          302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL  381 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~  381 (407)
                      +| |+|+.||.|++||+.++..+..+.+|.+.|.++.||.|                  +..+++|+.|.+|++||+...
T Consensus       591 ~L-aSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d------------------g~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  591 YL-ASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD------------------GNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             eE-eecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecC------------------CCEEEecCCCCeEEEEEchhh
Confidence            87 89999999999999999999999999999999999999                  999999999999999999643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-37  Score=282.72  Aligned_cols=210  Identities=23%  Similarity=0.384  Sum_probs=186.3

Q ss_pred             ccccccCCCCCCCCCCC----CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---CCce----ee
Q 046899          166 KNASKSGGNGDKPLESP----SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS---TPAV----KV  234 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~----~~  234 (407)
                      .+++++.|.++++|.++    +..++....+|+..|.+++++..+...|+++|.|+++++|++...+   .+..    ..
T Consensus       379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t  458 (775)
T KOG0319|consen  379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT  458 (775)
T ss_pred             EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence            56778999999999653    3335666778999999999998888999999999999999998732   1122    24


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      ...|...|+|++++| +..++|||+.|.+.++|++..      ...+.++.+|...|.+|.|+|..+ ++||+|.|++|+
T Consensus       459 ~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~------~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvK  530 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ------LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVK  530 (775)
T ss_pred             HHhhcccccceEecC-CCceEEecccccceeeecccC------ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEE
Confidence            467999999999999 889999999999999999997      899999999999999999999988 668999999999


Q ss_pred             EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      ||.+.++.+++++++|...|..+.|-.+                  +..+++++.||-|+||++.      +++|+.++.
T Consensus       531 IW~is~fSClkT~eGH~~aVlra~F~~~------------------~~qliS~~adGliKlWnik------t~eC~~tlD  586 (775)
T KOG0319|consen  531 IWSISTFSCLKTFEGHTSAVLRASFIRN------------------GKQLISAGADGLIKLWNIK------TNECEMTLD  586 (775)
T ss_pred             EEEeccceeeeeecCccceeEeeeeeeC------------------CcEEEeccCCCcEEEEecc------chhhhhhhh
Confidence            9999999999999999999988888443                  8899999999999999999      899999999


Q ss_pred             hcccceeEeeccC
Q 046899          395 KFKSHIFGCDKSC  407 (407)
Q Consensus       395 ~h~~~v~~~~~s~  407 (407)
                      +|.+.|++++-++
T Consensus       587 ~H~DrvWaL~~~~  599 (775)
T KOG0319|consen  587 AHNDRVWALSVSP  599 (775)
T ss_pred             hccceeEEEeecC
Confidence            9999999998764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3e-37  Score=266.27  Aligned_cols=309  Identities=17%  Similarity=0.294  Sum_probs=255.7

Q ss_pred             cCCCeeEEEEeec----ccccCccceEEEEeecc-cCc-cc----CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC
Q 046899           35 LVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQ-FNE-EA----RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD  104 (407)
Q Consensus        35 ~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~-~~~-~~----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~  104 (407)
                      ++.|...+.|.|.    +++++.+...|+|.... +.. ..    +.+.-...+...-...|++|+|+. +|.+||||+.
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-~G~~LatG~~  255 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-DGTLLATGSE  255 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-CCCeEEEeec
Confidence            6778899999993    67888888999994431 100 01    111111223334557899999998 9999999999


Q ss_pred             CCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCc
Q 046899          105 SPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSI  184 (407)
Q Consensus       105 dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~  184 (407)
                      ||.+|+|+.... ....+..|..+                          +..+.-.....++++++.|+++.+||..++
T Consensus       256 ~G~~riw~~~G~-l~~tl~~HkgP--------------------------I~slKWnk~G~yilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  256 DGEARIWNKDGN-LISTLGQHKGP--------------------------IFSLKWNKKGTYILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             CcEEEEEecCch-hhhhhhccCCc--------------------------eEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence            999999998753 34444444333                          222223344567899999999999999999


Q ss_pred             CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899          185 GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI  264 (407)
Q Consensus       185 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i  264 (407)
                      +..+.+.-|..+-..+.|-.+.  -|++++.|+.|+++-+....  +..++.+|.++|.++.|+| .+.+|+++++|+++
T Consensus       309 ~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~--P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~Tl  383 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR--PVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTL  383 (524)
T ss_pred             eEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC--cceeeecccCceEEEEECC-CCceEEEecCCCee
Confidence            9999999999887889997765  69999999999999998777  6888889999999999999 89999999999999


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC--------CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccC
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS--------SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIH  336 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--------~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  336 (407)
                      +||.+..      ......+.+|+..|..+.|+|.|+        ..+++++.|++|++||+..+.++.++..|..||++
T Consensus       384 kiWs~~~------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys  457 (524)
T KOG0273|consen  384 KIWSMGQ------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS  457 (524)
T ss_pred             EeeecCC------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence            9999988      788999999999999999999654        34679999999999999999999999999999999


Q ss_pred             CCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          337 PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       337 ~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      ++|||+                  +.++++|+.||.|+||+..      +++.++.+++- +.|+.|.|++
T Consensus       458 vafS~~------------------g~ylAsGs~dg~V~iws~~------~~~l~~s~~~~-~~Ifel~Wn~  503 (524)
T KOG0273|consen  458 VAFSPN------------------GRYLASGSLDGCVHIWSTK------TGKLVKSYQGT-GGIFELCWNA  503 (524)
T ss_pred             EEecCC------------------CcEEEecCCCCeeEecccc------chheeEeecCC-CeEEEEEEcC
Confidence            999999                  9999999999999999999      89999988864 4689999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-37  Score=259.04  Aligned_cols=272  Identities=21%  Similarity=0.309  Sum_probs=243.7

Q ss_pred             eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899           74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG  153 (407)
Q Consensus        74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~  153 (407)
                      ....++.+|..+|+.+-|+| +-.++++++.|++|++||..+++....+.+|...+.         |+.           
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~---------di~-----------  157 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVF---------DIS-----------  157 (406)
T ss_pred             Cchhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhcccccee---------EEE-----------
Confidence            55667778999999999999 888999999999999999999999888888876532         211           


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899          154 SAKSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV  232 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  232 (407)
                         +.+.|   ..+++.+.|-.+++||..+ .+++..+.+|...|.+++|-|.| .++++++.|.+|+.|++.++.  ++
T Consensus       158 ---~~a~G---k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--cv  228 (406)
T KOG0295|consen  158 ---FDASG---KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--CV  228 (406)
T ss_pred             ---EecCc---cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccce--eE
Confidence               11122   4577888888899999977 67788889999999999999999 899999999999999999999  89


Q ss_pred             eeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC-------------
Q 046899          233 KVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD-------------  299 (407)
Q Consensus       233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-------------  299 (407)
                      .++.+|...|..++.+. ||.++|+++.|.++++|-+.+      +++...++.|+.+|.+++|.|.             
T Consensus       229 ~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t------~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~  301 (406)
T KOG0295|consen  229 KTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT------KQCKAELREHEHPVECIAWAPESSYPSISEATGST  301 (406)
T ss_pred             EeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEecc------chhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence            99999999999999999 999999999999999999999      8889999999999999999762             


Q ss_pred             -CCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          300 -KSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       300 -~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                       +..++++++.|++|++||+.++.++.++.+|+..|.+++|+|-                  |.+|++...|++++|||+
T Consensus       302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~------------------Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG------------------GKYILSCADDKTLRVWDL  363 (406)
T ss_pred             CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC------------------CeEEEEEecCCcEEEEEe
Confidence             2235679999999999999999999999999999999999886                  999999999999999999


Q ss_pred             cccccCChHHHHHHHhhcccceeEeecc
Q 046899          379 IDLIYRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       379 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                      +      ..+|++.+..|...|++++|-
T Consensus       364 ~------~~~cmk~~~ah~hfvt~lDfh  385 (406)
T KOG0295|consen  364 K------NLQCMKTLEAHEHFVTSLDFH  385 (406)
T ss_pred             c------cceeeeccCCCcceeEEEecC
Confidence            9      899999999999999999984

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-36  Score=243.78  Aligned_cols=233  Identities=19%  Similarity=0.245  Sum_probs=209.6

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      ...+.+|++.|..++..+.+.+++++++.|.++.+|++...                                       
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d---------------------------------------   48 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD---------------------------------------   48 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC---------------------------------------
Confidence            34456899999999999888899999999999999999754                                       


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  235 (407)
                                              |.+.+.+++.+.+|...|..+..++++ +++++++.|+++++||+.+++  ....+
T Consensus        49 ------------------------d~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~--~t~~f  101 (315)
T KOG0279|consen   49 ------------------------DIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE--STRRF  101 (315)
T ss_pred             ------------------------ccccCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCc--EEEEE
Confidence                                    224566788999999999999999999 899999999999999999997  68888


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--CCCEEEEEEcCCC-CCEEEEeeCCCe
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--SAAVLCVQWSPDK-SSVFGSSAEDGI  312 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~-~~ll~s~~~d~~  312 (407)
                      .+|...|.+++|+| +.+.+++|+.|.+|++|++..       .+..++..+  .+.|+|+.|+|+. ..+|++++.|++
T Consensus       102 ~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt  173 (315)
T KOG0279|consen  102 VGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT  173 (315)
T ss_pred             EecCCceEEEEecC-CCceeecCCCcceeeeeeecc-------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence            99999999999999 899999999999999999984       777777654  7899999999983 335689999999


Q ss_pred             EEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHH
Q 046899          313 LNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAE  392 (407)
Q Consensus       313 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~  392 (407)
                      |++||+++.+....+.+|.+.++.+++|||                  +...++|..||.+.+||++      +++++..
T Consensus       174 vKvWnl~~~~l~~~~~gh~~~v~t~~vSpD------------------GslcasGgkdg~~~LwdL~------~~k~lys  229 (315)
T KOG0279|consen  174 VKVWNLRNCQLRTTFIGHSGYVNTVTVSPD------------------GSLCASGGKDGEAMLWDLN------EGKNLYS  229 (315)
T ss_pred             EEEEccCCcchhhccccccccEEEEEECCC------------------CCEEecCCCCceEEEEEcc------CCceeEe
Confidence            999999999999999999999999999999                  8899999999999999999      7888776


Q ss_pred             HhhcccceeEeeccC
Q 046899          393 LDKFKSHIFGCDKSC  407 (407)
Q Consensus       393 ~~~h~~~v~~~~~s~  407 (407)
                      +. |...|.+++|||
T Consensus       230 l~-a~~~v~sl~fsp  243 (315)
T KOG0279|consen  230 LE-AFDIVNSLCFSP  243 (315)
T ss_pred             cc-CCCeEeeEEecC
Confidence            65 788999999997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.8e-37  Score=261.97  Aligned_cols=284  Identities=22%  Similarity=0.306  Sum_probs=242.4

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      +...|.-.+.|.|.   +.+|+..+.+.+|.++.++        -++-+..|+.+|+++.|++ ++.++++|+.+|.|++
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--------FEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKy  164 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--------FETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKY  164 (464)
T ss_pred             ccccceeeEEEcCCCceeEeecccccEEEecCceee--------HHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEe
Confidence            35667788999996   8999999999999654222        1223337999999999999 9999999999999999


Q ss_pred             EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899          111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY  190 (407)
Q Consensus       111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  190 (407)
                      |+..-.. +..+..|.                         ...+..++++..++.+++++.|+.++|||....+....+
T Consensus       165 Wqpnmnn-Vk~~~ahh-------------------------~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL  218 (464)
T KOG0284|consen  165 WQPNMNN-VKIIQAHH-------------------------AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL  218 (464)
T ss_pred             cccchhh-hHHhhHhh-------------------------hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence            9987432 22222221                         122333445556788999999999999999999998999


Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      .+|.-.|.+++|+|.. .++++||.|..|++||.++++  ++.++..|+..|..+.|+| ++++|+|++.|..+++||+|
T Consensus       219 ~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~--cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR  294 (464)
T KOG0284|consen  219 RGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGS--CLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIR  294 (464)
T ss_pred             ccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcc--hhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehh
Confidence            9999999999999998 799999999999999999999  8889999999999999999 78999999999999999999


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhcccc
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETK  349 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~  349 (407)
                      +      .+.++++++|+..|+++.|+|-...||++|+.||.|..|.+...+.+..++ +|+..|++++|.|-       
T Consensus       295 ~------mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl-------  361 (464)
T KOG0284|consen  295 T------MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL-------  361 (464)
T ss_pred             H------hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc-------
Confidence            8      788999999999999999999988899999999999999999656665554 68999999999885       


Q ss_pred             ceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          350 LLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                                 +..+++|+.|.++++|.-..
T Consensus       362 -----------Ghil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  362 -----------GHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             -----------ceeEeecCCCcceeeeccCC
Confidence                       88899999999999997653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.3e-36  Score=276.43  Aligned_cols=266  Identities=17%  Similarity=0.311  Sum_probs=221.9

Q ss_pred             hccCceEEEeeeecccCCCeeEEEEee---cccccCccceEEEEeec--------------cc---------CcccCCcc
Q 046899           20 KSLVPVLYDWLANHNLVWPSLSCRWGP---QLEQATYKNRQRLYLSE--------------QF---------NEEARSPF   73 (407)
Q Consensus        20 ~~~~~~~y~~l~~~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~--------------~~---------~~~~~~~~   73 (407)
                      +.+.|.++=+-.+. ..--...+++.+   .++.|-.|..+++|..+              +.         +..+....
T Consensus       363 ~~~lpSic~YT~~n-t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  363 RNSLPSICMYTFHN-TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCCCcEEEEEEEE-cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            55666654322222 121223345654   37777778889999766              00         11122233


Q ss_pred             eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899           74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG  153 (407)
Q Consensus        74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~  153 (407)
                      .....+.||.++|...+|+| +.++|++++.|++||+|.+.+..++..+.+|..+         +||+.           
T Consensus       442 ~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P---------VwdV~-----------  500 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP---------VWDVQ-----------  500 (707)
T ss_pred             ceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcc---------eeeEE-----------
Confidence            34455889999999999999 8899999999999999999999999888888776         67765           


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899          154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK  233 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  233 (407)
                            +.+...++++++.|++.++|......+.+.+.+|...|.|++|+|+. +++++||.|.+|++||+.++.  .++
T Consensus       501 ------F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~--~VR  571 (707)
T KOG0263|consen  501 ------FAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGN--SVR  571 (707)
T ss_pred             ------ecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCc--EEE
Confidence                  33445668999999999999999999999999999999999999999 899999999999999999999  789


Q ss_pred             eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      .+.+|.++|.+++|+| +|++|++|+.||.|.+||+.+      +.++..+.+|++.|.++.|+.+|. +||+|+.|++|
T Consensus       572 iF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~------~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV  643 (707)
T KOG0263|consen  572 IFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLAN------GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSV  643 (707)
T ss_pred             EecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCC------CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeE
Confidence            9999999999999999 999999999999999999999      899999999999999999999999 66899999999


Q ss_pred             EEEeCCCCCcc
Q 046899          314 NIWDHEKIGEK  324 (407)
Q Consensus       314 ~vwd~~~~~~~  324 (407)
                      ++||+......
T Consensus       644 ~lWD~~~~~~~  654 (707)
T KOG0263|consen  644 RLWDLTKVIEL  654 (707)
T ss_pred             EEEEchhhccc
Confidence            99999875443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.1e-35  Score=265.76  Aligned_cols=344  Identities=17%  Similarity=0.216  Sum_probs=277.9

Q ss_pred             eeeecccCCCeeEEEEeec--ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCC
Q 046899           29 WLANHNLVWPSLSCRWGPQ--LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSP  106 (407)
Q Consensus        29 ~l~~~~~~~p~~s~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg  106 (407)
                      +|+++.+.-|.-+++|.|+  +...+-.+.+.+|-.+....+.-.|+.......+|...|.+|.|+. +.++|++|+.|-
T Consensus        89 Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~  167 (893)
T KOG0291|consen   89 VLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDL  167 (893)
T ss_pred             eeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEecc-CCceEEeccccc
Confidence            5677788889999999997  4455556668899776444445677777778889999999999998 899999999999


Q ss_pred             cEEEEeCcCCCC--cccccCcCCCCCCC--------------CCcEEEEecccccccc----------------------
Q 046899          107 DVLIWDVEAQPN--RHAVLGAADSHPDL--------------DQSVVLWSIQDHVSAL----------------------  148 (407)
Q Consensus       107 ~i~vwd~~~~~~--~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~----------------------  148 (407)
                      ++|+|+++..+.  ...+.+|...+...              ||.+.+|.........                      
T Consensus       168 s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek  247 (893)
T KOG0291|consen  168 SARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK  247 (893)
T ss_pred             eEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence            999999987765  44556676654332              9999999877210000                      


Q ss_pred             --------------ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe
Q 046899          149 --------------AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG  214 (407)
Q Consensus       149 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~  214 (407)
                                    ......+.......-...++++-++|...+++++....++.+.-...+|..++|+..| ..+|.|+
T Consensus       248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~  326 (893)
T KOG0291|consen  248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWIAFGC  326 (893)
T ss_pred             hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEEEEcC
Confidence                          0000112223333334567778899999999999999999998888899999999999 7777776


Q ss_pred             C-CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEE
Q 046899          215 D-DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLC  293 (407)
Q Consensus       215 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~  293 (407)
                      . -|.+-+|+.++..  .+...++|...+++++++| ||.++|||+.||.|+|||.+.      +-+..+|..|+..|+.
T Consensus       327 ~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~S------gfC~vTFteHts~Vt~  397 (893)
T KOG0291|consen  327 SKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQS------GFCFVTFTEHTSGVTA  397 (893)
T ss_pred             CccceEEEEEeeccc--eeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccC------ceEEEEeccCCCceEE
Confidence            5 4899999999887  6788889999999999999 999999999999999999999      8999999999999999


Q ss_pred             EEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee-e
Q 046899          294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK-V  372 (407)
Q Consensus       294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~  372 (407)
                      ++|+..|+.+ .+++.||+||.||+...++.+++..... +                ..++.....-+..+.+|+.|. .
T Consensus       398 v~f~~~g~~l-lssSLDGtVRAwDlkRYrNfRTft~P~p-~----------------QfscvavD~sGelV~AG~~d~F~  459 (893)
T KOG0291|consen  398 VQFTARGNVL-LSSSLDGTVRAWDLKRYRNFRTFTSPEP-I----------------QFSCVAVDPSGELVCAGAQDSFE  459 (893)
T ss_pred             EEEEecCCEE-EEeecCCeEEeeeecccceeeeecCCCc-e----------------eeeEEEEcCCCCEEEeeccceEE
Confidence            9999999966 5999999999999999988888865332 1                111233333377888999998 9


Q ss_pred             EEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          373 LEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       373 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      |+||++.      +|+++..+.||.++|.+++|++
T Consensus       460 IfvWS~q------TGqllDiLsGHEgPVs~l~f~~  488 (893)
T KOG0291|consen  460 IFVWSVQ------TGQLLDILSGHEGPVSGLSFSP  488 (893)
T ss_pred             EEEEEee------cCeeeehhcCCCCcceeeEEcc
Confidence            9999999      9999999999999999999985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.2e-36  Score=247.15  Aligned_cols=270  Identities=19%  Similarity=0.278  Sum_probs=226.9

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC-CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ-PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      ...+.+|++.|+.+.|+| ++..||||+.|..|.+|++... +....+.+|...+.         +              
T Consensus        40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM---------~--------------   95 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM---------E--------------   95 (338)
T ss_pred             hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeE---------e--------------
Confidence            445668999999999999 9999999999999999996644 33344455544321         1              


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                         +......+.+++++.|.+++.||+++++.+..+++|..-|+.+.-+..|+.++.+++.|+++++||+|+..  .+++
T Consensus        96 ---l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t  170 (338)
T KOG0265|consen   96 ---LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKT  170 (338)
T ss_pred             ---eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhc
Confidence               22334456788999999999999999999999999999999999777888899999999999999999877  4555


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      + ..+.+++++.|.. .+..+.+|+-|+.|++||+|.      ...+.++.+|.++|+.+..+|+|.+++ +-+.|.+++
T Consensus       171 ~-~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~------~d~~~~lsGh~DtIt~lsls~~gs~ll-snsMd~tvr  241 (338)
T KOG0265|consen  171 F-ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK------NDGLYTLSGHADTITGLSLSRYGSFLL-SNSMDNTVR  241 (338)
T ss_pred             c-ccceeEEEEEecc-cccceeeccccCceeeecccc------CcceEEeecccCceeeEEeccCCCccc-cccccceEE
Confidence            4 4567899999988 888999999999999999999      899999999999999999999999986 999999999


Q ss_pred             EEeCCCCC----cccccccCC----CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCCh
Q 046899          315 IWDHEKIG----EKQDYGELK----YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPE  386 (407)
Q Consensus       315 vwd~~~~~----~~~~~~~~~----~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~  386 (407)
                      +||++...    ++..+.++.    ......+|||+                  +..|.+|+.|..+++||..      .
T Consensus       242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~------------------~~~i~ags~dr~vyvwd~~------~  297 (338)
T KOG0265|consen  242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN------------------GTKITAGSADRFVYVWDTT------S  297 (338)
T ss_pred             EEEecccCCCCceEEEeecchhhhhhhcceeeccCC------------------CCccccccccceEEEeecc------c
Confidence            99998542    244555532    22445677777                  8899999999999999998      6


Q ss_pred             HHHHHHHhhcccceeEeeccC
Q 046899          387 EEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       387 ~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      ...+..+.||.+.|.+++|.|
T Consensus       298 r~~lyklpGh~gsvn~~~Fhp  318 (338)
T KOG0265|consen  298 RRILYKLPGHYGSVNEVDFHP  318 (338)
T ss_pred             ccEEEEcCCcceeEEEeeecC
Confidence            788999999999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-35  Score=233.57  Aligned_cols=274  Identities=20%  Similarity=0.225  Sum_probs=230.3

Q ss_pred             CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899           71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAA  150 (407)
Q Consensus        71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~  150 (407)
                      .|......+-.|+++|++++|+- +|++.+|++.|.+|++|+...+.+++++.+|...+.+                   
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD-------------------   64 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLD-------------------   64 (307)
T ss_pred             CcchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeee-------------------
Confidence            34444445557999999999998 9999999999999999999999999998887665322                   


Q ss_pred             CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                             .+....++.+++++.|..+.+||..+++.++.+.+|.+.|+.++|+.+. ..+++|+.|.++++||.|+....
T Consensus        65 -------~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~e  136 (307)
T KOG0316|consen   65 -------AALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFE  136 (307)
T ss_pred             -------ccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCC
Confidence                   1233445678889999999999999999999999999999999999988 89999999999999999998877


Q ss_pred             ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                      +++.+......|.++..+   +..+++|+.||+++.||+|.      +......-+  .+|+++.|++++...| .++.|
T Consensus       137 PiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~------G~l~sDy~g--~pit~vs~s~d~nc~L-a~~l~  204 (307)
T KOG0316|consen  137 PIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK------GTLSSDYFG--HPITSVSFSKDGNCSL-ASSLD  204 (307)
T ss_pred             ccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec------ceeehhhcC--CcceeEEecCCCCEEE-Eeecc
Confidence            788888889999999985   47899999999999999998      766666654  5899999999999876 78899


Q ss_pred             CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899          311 GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL  390 (407)
Q Consensus       311 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~  390 (407)
                      +++++.|-.+++.++.+.+|...-+.+.                .++......+++||.||.|++||+.      ++..+
T Consensus       205 stlrLlDk~tGklL~sYkGhkn~eykld----------------c~l~qsdthV~sgSEDG~Vy~wdLv------d~~~~  262 (307)
T KOG0316|consen  205 STLRLLDKETGKLLKSYKGHKNMEYKLD----------------CCLNQSDTHVFSGSEDGKVYFWDLV------DETQI  262 (307)
T ss_pred             ceeeecccchhHHHHHhcccccceeeee----------------eeecccceeEEeccCCceEEEEEec------cceee
Confidence            9999999999999999999876422222                2222335678899999999999998      67788


Q ss_pred             HHHhhcccc-eeEeecc
Q 046899          391 AELDKFKSH-IFGCDKS  406 (407)
Q Consensus       391 ~~~~~h~~~-v~~~~~s  406 (407)
                      ..+..|... |.++++-
T Consensus       263 sk~~~~~~v~v~dl~~h  279 (307)
T KOG0316|consen  263 SKLSVVSTVIVTDLSCH  279 (307)
T ss_pred             eeeccCCceeEEeeecc
Confidence            888888877 7777663

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-34  Score=231.84  Aligned_cols=273  Identities=17%  Similarity=0.207  Sum_probs=216.5

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      .+.+++.|..+-+|-   +..++..--.....+.||...|+.+..++ ++++.++++.|+++|+||+.+++..+.+.+|.
T Consensus        30 ~l~sasrDk~ii~W~---L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~  105 (315)
T KOG0279|consen   30 ILVSASRDKTIIVWK---LTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHT  105 (315)
T ss_pred             eEEEcccceEEEEEE---eccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence            366788898888883   33332222233445558999999999998 99999999999999999999998888887776


Q ss_pred             CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec-ccCEEEEEECCC
Q 046899          127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH-EDTVEDVQFCPS  205 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~  205 (407)
                      ..+                          ...+....+..+++|+.|.++++|+............. .+.|+|+.|+|.
T Consensus       106 ~dV--------------------------lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen  106 KDV--------------------------LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             Cce--------------------------EEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCC
Confidence            542                          22234445567899999999999998765554444332 789999999998


Q ss_pred             C-CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899          206 S-AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF  284 (407)
Q Consensus       206 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~  284 (407)
                      . ..++++++.|++|++||+++.+  ....+.+|.+.++.+.++| ||.+.++|+.||.+.+||++.      ++.++++
T Consensus       160 ~~~p~Ivs~s~DktvKvWnl~~~~--l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~------~k~lysl  230 (315)
T KOG0279|consen  160 ESNPIIVSASWDKTVKVWNLRNCQ--LRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE------GKNLYSL  230 (315)
T ss_pred             CCCcEEEEccCCceEEEEccCCcc--hhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC------CceeEec
Confidence            3 3689999999999999999888  6778889999999999999 999999999999999999999      8888888


Q ss_pred             cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC---------CCcccCCCCcCcchhccccceeeee
Q 046899          285 EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL---------KYPIIHPAYSSDMLDIETKLLTSIG  355 (407)
Q Consensus       285 ~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~---------~~~v~~~~~s~d~~~~~~~~~~~~~  355 (407)
                      . |...|.+++|+|+...|  +...+..|+|||+.+...+..+.-.         .....+++||+|             
T Consensus       231 ~-a~~~v~sl~fspnrywL--~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d-------------  294 (315)
T KOG0279|consen  231 E-AFDIVNSLCFSPNRYWL--CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD-------------  294 (315)
T ss_pred             c-CCCeEeeEEecCCceeE--eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC-------------
Confidence            6 78899999999998754  3444667999999998777655321         111233455555             


Q ss_pred             EeeCccceeeeEEEeeeEEEeecc
Q 046899          356 MHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       356 ~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                           +..+++|..|+.|++|.+.
T Consensus       295 -----G~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  295 -----GQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             -----CcEEEeeecCCcEEEEEee
Confidence                 8899999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.2e-34  Score=248.66  Aligned_cols=276  Identities=18%  Similarity=0.298  Sum_probs=230.4

Q ss_pred             CeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           38 PSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        38 p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      ...+++|..   .+++|.+++.+|+|         +.+......+-.|+++|.+|.|+. .|++|++++.|+++.+||..
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw---------~~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~  306 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIW---------NKDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAH  306 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEE---------ecCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEecc
Confidence            344778964   59999999999999         333333445557999999999998 89999999999999999998


Q ss_pred             CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecc
Q 046899          115 AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHE  194 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  194 (407)
                      ++...+.+.-|....-+     .-|--                      +..+++.+.++.+.++.+....++.++.+|.
T Consensus       307 ~g~~~q~f~~~s~~~lD-----VdW~~----------------------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~  359 (524)
T KOG0273|consen  307 TGTVKQQFEFHSAPALD-----VDWQS----------------------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHH  359 (524)
T ss_pred             CceEEEeeeeccCCccc-----eEEec----------------------CceEeecCCCceEEEEEecCCCcceeeeccc
Confidence            88766665544433111     11221                      1246677788888888888888999999999


Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC--------CCCEEEEEeCCCcEEE
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH--------DVNLILTGSADNSIHM  266 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~--------~~~~l~tg~~dg~i~v  266 (407)
                      ++|.+|.|+|.+ .+|++++.|++++||......  ....+.+|...|..+.|+|.        .+..+++++.|++|++
T Consensus       360 g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l  436 (524)
T KOG0273|consen  360 GEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL  436 (524)
T ss_pred             CceEEEEECCCC-ceEEEecCCCeeEeeecCCCc--chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence            999999999999 899999999999999988777  67888999999999999983        3458999999999999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI  346 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~  346 (407)
                      ||+..      +.++.+|..|..+|.+++|+|+|+|+ |+|+.||.|.+|+++.++..+.+.+... |..++|+.+    
T Consensus       437 wdv~~------gv~i~~f~kH~~pVysvafS~~g~yl-AsGs~dg~V~iws~~~~~l~~s~~~~~~-Ifel~Wn~~----  504 (524)
T KOG0273|consen  437 WDVES------GVPIHTLMKHQEPVYSVAFSPNGRYL-ASGSLDGCVHIWSTKTGKLVKSYQGTGG-IFELCWNAA----  504 (524)
T ss_pred             EEccC------CceeEeeccCCCceEEEEecCCCcEE-EecCCCCeeEeccccchheeEeecCCCe-EEEEEEcCC----
Confidence            99999      99999999999999999999999986 7999999999999999988888876444 667777666    


Q ss_pred             cccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                    +++|.....|+.+++-|+.
T Consensus       505 --------------G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  505 --------------GDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             --------------CCEEEEEecCCCceEEEec
Confidence                          7888888899999988875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-34  Score=228.33  Aligned_cols=241  Identities=18%  Similarity=0.331  Sum_probs=213.2

Q ss_pred             CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           70 RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        70 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      +.+.+.+.....-.+.+..++|++...+.+++++.||++++||....                                 
T Consensus        47 ~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~---------------------------------   93 (311)
T KOG0277|consen   47 DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP---------------------------------   93 (311)
T ss_pred             CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC---------------------------------
Confidence            56667778888889999999999988899999999999999995422                                 


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST  229 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  229 (407)
                                                        ..+++.+++|..+|.++.|++.....+++++.|++|++||...++ 
T Consensus        94 ----------------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-  138 (311)
T KOG0277|consen   94 ----------------------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-  138 (311)
T ss_pred             ----------------------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-
Confidence                                              135677889999999999999877889999999999999998777 


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                       .+.++.+|...|....|+|..++++++++.||.+++||++.+     ++.+. +..|...+.+..|+.-.+++++||+.
T Consensus       139 -Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-----gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~v  211 (311)
T KOG0277|consen  139 -SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-----GKFMS-IEAHNSEILCCDWSKYNHNVLATGGV  211 (311)
T ss_pred             -ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-----CceeE-EEeccceeEeecccccCCcEEEecCC
Confidence             688899999999999999999999999999999999999985     34444 88999999999999999999999999


Q ss_pred             CCeEEEEeCCCCCcc-cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH
Q 046899          310 DGILNIWDHEKIGEK-QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE  388 (407)
Q Consensus       310 d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~  388 (407)
                      |+.|+.||+++.+.. ..+.+|...|..+.|||-                 |...|++++.|=++||||...     ...
T Consensus       212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph-----------------~~~lLaSasYDmT~riw~~~~-----~ds  269 (311)
T KOG0277|consen  212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH-----------------HASLLASASYDMTVRIWDPER-----QDS  269 (311)
T ss_pred             CceEEEEehhhccccceeecCCceEEEEEecCcc-----------------hhhHhhhccccceEEeccccc-----chh
Confidence            999999999987654 567789999999999886                 478899999999999999863     567


Q ss_pred             HHHHHhhcccceeEeeccC
Q 046899          389 VLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       389 ~~~~~~~h~~~v~~~~~s~  407 (407)
                      ++.++.-|+..|.+++||.
T Consensus       270 ~~e~~~~HtEFv~g~Dws~  288 (311)
T KOG0277|consen  270 AIETVDHHTEFVCGLDWSL  288 (311)
T ss_pred             hhhhhhccceEEecccccc
Confidence            8899999999999999984

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-34  Score=242.62  Aligned_cols=278  Identities=19%  Similarity=0.305  Sum_probs=235.2

Q ss_pred             CeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           38 PSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        38 p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      |...+-+.|   ..++++.+.++++|   ++  ++..  . ...+.||.+.|..|+|.. .|++||+++.|-.+++||..
T Consensus       110 ~vt~v~~hp~~~~v~~as~d~tikv~---D~--~tg~--~-e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  110 SVTRVIFHPSEALVVSASEDATIKVF---DT--ETGE--L-ERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             ceeeeeeccCceEEEEecCCceEEEE---Ec--cchh--h-hhhhhccccceeEEEEec-CccEEEecCCccchhheeHH
Confidence            333344444   46678888899999   22  2221  1 344558999999999998 88999999999999999998


Q ss_pred             C-CCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec
Q 046899          115 A-QPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH  193 (407)
Q Consensus       115 ~-~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~  193 (407)
                      + -++.+...+|...+    ..+.+|-+                   |   ..+++++.|.+++.|+..++-++.++.+|
T Consensus       181 ~~~~c~ks~~gh~h~v----S~V~f~P~-------------------g---d~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  181 TFFRCIKSLIGHEHGV----SSVFFLPL-------------------G---DHILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             HHHHHHHHhcCcccce----eeEEEEec-------------------C---CeeeecccccceeEEecccceeEEeccCc
Confidence            7 35566666665543    23333332                   2   45888999999999999999999999999


Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC--------------CCCEEEEEe
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH--------------DVNLILTGS  259 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------~~~~l~tg~  259 (407)
                      ...|..++.+.+| .++++++.|.+|++|-+.+++  +...+..|.-+|-|++|.|.              .+.++++++
T Consensus       235 ~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S  311 (406)
T KOG0295|consen  235 SEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS  311 (406)
T ss_pred             hHhEEEEEecCCe-eEEEecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence            9999999999999 899999999999999999988  67788899999999999873              236999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCC
Q 046899          260 ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAY  339 (407)
Q Consensus       260 ~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  339 (407)
                      .|++|++||+.+      +.++.++.+|...|..++|+|.|+||+ |+.+|+++++||+++.+++.+++.|..-+++++|
T Consensus       312 rDktIk~wdv~t------g~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf  384 (406)
T KOG0295|consen  312 RDKTIKIWDVST------GMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF  384 (406)
T ss_pred             ccceEEEEeccC------CeEEEEEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence            999999999999      999999999999999999999999985 9999999999999999999999999999999888


Q ss_pred             cCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          340 SSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       340 s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      ..+                  ..++++|+.|-++++|..
T Consensus       385 h~~------------------~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  385 HKT------------------APYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCC------------------CceEEeccccceeeeeec
Confidence            666                  569999999999999964

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.9e-34  Score=241.11  Aligned_cols=277  Identities=17%  Similarity=0.264  Sum_probs=236.2

Q ss_pred             cceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEE
Q 046899           72 PFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVV  137 (407)
Q Consensus        72 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~  137 (407)
                      |........+|.+-|.|+++-| ..++++||+.|++|+|||+.++....++.+|...+..+              |+.|+
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             cceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            3344445568999999999999 78899999999999999999999888888877655544              99999


Q ss_pred             EEecccc--ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC
Q 046899          138 LWSIQDH--VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD  215 (407)
Q Consensus       138 ~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~  215 (407)
                      .||++..  ++.+..+-.++..+........+++++.|..+++||+.+...+..+.+|..+|..+.+.|.+ ..+++|+.
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~  297 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSH  297 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC-CceEEecC
Confidence            9999876  45667777777777777778889999999999999999999999999999999999999988 47999999


Q ss_pred             CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEE
Q 046899          216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQ  295 (407)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~  295 (407)
                      |++|++||++.++  ....+..|...|.+++.+| ....||+++.|. |+-|++..      +..+..+.+|++-|++++
T Consensus       298 D~tvrlWDl~agk--t~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~------g~f~~nlsgh~~iintl~  367 (460)
T KOG0285|consen  298 DSTVRLWDLRAGK--TMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQWKLPE------GEFLQNLSGHNAIINTLS  367 (460)
T ss_pred             CceEEEeeeccCc--eeEeeecccceeeEEecCC-chhhhhccCCcc-ceeccCCc------cchhhccccccceeeeee
Confidence            9999999999998  6778889999999999999 889999998774 89999988      888889999999999999


Q ss_pred             EcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCC--------CcccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899          296 WSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK--------YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL  367 (407)
Q Consensus       296 ~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~  367 (407)
                      ...|+-  +++|++.|.+.+||.+++-..+.....-        ..|++.+|                  ..-+.+|+++
T Consensus       368 ~nsD~v--~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f------------------Dktg~rlit~  427 (460)
T KOG0285|consen  368 VNSDGV--LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF------------------DKTGSRLITG  427 (460)
T ss_pred             eccCce--EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEee------------------cccCceEEec
Confidence            998884  4699999999999999887766653221        22333333                  2337799999


Q ss_pred             EEeeeEEEeeccc
Q 046899          368 TMVKVLEIWRMID  380 (407)
Q Consensus       368 ~~d~~i~iwd~~~  380 (407)
                      ..|.+|++|.-.+
T Consensus       428 eadKtIk~~keDe  440 (460)
T KOG0285|consen  428 EADKTIKMYKEDE  440 (460)
T ss_pred             cCCcceEEEeccc
Confidence            9999999998764

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.4e-35  Score=250.32  Aligned_cols=265  Identities=21%  Similarity=0.335  Sum_probs=221.6

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      -+-.|+.|.|.| +|+.|+||+..|.+.+|+..+-.....++.|...+..     ..|                     .
T Consensus        95 vkc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~-----m~w---------------------s  147 (464)
T KOG0284|consen   95 VKCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRT-----MKW---------------------S  147 (464)
T ss_pred             cccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhccccee-----EEE---------------------c
Confidence            456899999999 9999999999999999998654333333444333211     112                     1


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD  241 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  241 (407)
                      .....++++..+|.|++|+............|...|++++|+|.+ ..|++++.||+|+|||....+  ....+.+|.-.
T Consensus       148 ~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~k--ee~vL~GHgwd  224 (464)
T KOG0284|consen  148 HNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPK--EERVLRGHGWD  224 (464)
T ss_pred             cCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCc--hhheeccCCCC
Confidence            222457888999999999976554444444455999999999988 899999999999999999887  56677999999


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      |.+++|+| ...++++|+.|..|++||.++      +.++.++.+|+..|..+.|.|++.+| +|+|.|..++++|+++.
T Consensus       225 VksvdWHP-~kgLiasgskDnlVKlWDprS------g~cl~tlh~HKntVl~~~f~~n~N~L-lt~skD~~~kv~DiR~m  296 (464)
T KOG0284|consen  225 VKSVDWHP-TKGLIASGSKDNLVKLWDPRS------GSCLATLHGHKNTVLAVKFNPNGNWL-LTGSKDQSCKVFDIRTM  296 (464)
T ss_pred             cceeccCC-ccceeEEccCCceeEeecCCC------cchhhhhhhccceEEEEEEcCCCCee-EEccCCceEEEEehhHh
Confidence            99999999 778999999999999999999      99999999999999999999999876 69999999999999999


Q ss_pred             CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh-hcccce
Q 046899          322 GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD-KFKSHI  400 (407)
Q Consensus       322 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v  400 (407)
                      +.+.++.+|...++++.|+|-                 +.+.+++|+.||.|..|.+.      ..+++..+. +|...|
T Consensus       297 kEl~~~r~Hkkdv~~~~WhP~-----------------~~~lftsgg~Dgsvvh~~v~------~~~p~~~i~~AHd~~i  353 (464)
T KOG0284|consen  297 KELFTYRGHKKDVTSLTWHPL-----------------NESLFTSGGSDGSVVHWVVG------LEEPLGEIPPAHDGEI  353 (464)
T ss_pred             HHHHHhhcchhhheeeccccc-----------------cccceeeccCCCceEEEecc------ccccccCCCcccccce
Confidence            999999999999999999885                 37788899999999999997      455655555 799999


Q ss_pred             eEeeccC
Q 046899          401 FGCDKSC  407 (407)
Q Consensus       401 ~~~~~s~  407 (407)
                      ++++|-|
T Consensus       354 wsl~~hP  360 (464)
T KOG0284|consen  354 WSLAYHP  360 (464)
T ss_pred             eeeeccc
Confidence            9999854

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4e-35  Score=244.33  Aligned_cols=259  Identities=15%  Similarity=0.267  Sum_probs=221.3

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      ....|.|+.+   +...+++|..|.+|+|||..+..+...+.+|...       +...+...                  
T Consensus       196 ~skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS-------VLCLqyd~------------------  247 (499)
T KOG0281|consen  196 NSKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGS-------VLCLQYDE------------------  247 (499)
T ss_pred             cCCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCc-------EEeeeccc------------------
Confidence            4567999987   4457999999999999999999999999998654       33333322                  


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-CceeeecccCc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-PAVKVEKAHNA  240 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~  240 (407)
                         ..+++|++|.++++||.++++++.++.+|...|..+.|+.   .++++++.|.++.+||+..... .+...+.+|..
T Consensus       248 ---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA  321 (499)
T KOG0281|consen  248 ---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  321 (499)
T ss_pred             ---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence               2478899999999999999999999999999999999985   5899999999999999987652 13345679999


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      .|+.+.|+.   +++++++.|.+|++|++.+      ++.++++.+|...|.|+++  .++ ++++|+.|.+|++||++.
T Consensus       322 aVNvVdfd~---kyIVsASgDRTikvW~~st------~efvRtl~gHkRGIAClQY--r~r-lvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  322 AVNVVDFDD---KYIVSASGDRTIKVWSTST------CEFVRTLNGHKRGIACLQY--RDR-LVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             heeeecccc---ceEEEecCCceEEEEeccc------eeeehhhhcccccceehhc--cCe-EEEecCCCceEEEEeccc
Confidence            999999964   6999999999999999999      9999999999999999988  566 568999999999999999


Q ss_pred             CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc---cCChHHHHHHHhhcc
Q 046899          321 IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI---YRPEEEVLAELDKFK  397 (407)
Q Consensus       321 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~h~  397 (407)
                      +.+++.+++|..-|.++.|.                    ...|++|..||+|+|||+...-   .....-|+..+..|+
T Consensus       390 G~cLRvLeGHEeLvRciRFd--------------------~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs  449 (499)
T KOG0281|consen  390 GACLRVLEGHEELVRCIRFD--------------------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS  449 (499)
T ss_pred             cHHHHHHhchHHhhhheeec--------------------CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc
Confidence            99999999999999999882                    6789999999999999997421   112334899999999


Q ss_pred             cceeEeecc
Q 046899          398 SHIFGCDKS  406 (407)
Q Consensus       398 ~~v~~~~~s  406 (407)
                      +.|+.+-|.
T Consensus       450 gRVFrLQFD  458 (499)
T KOG0281|consen  450 GRVFRLQFD  458 (499)
T ss_pred             ceeEEEeec
Confidence            999988773

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.1e-33  Score=260.88  Aligned_cols=267  Identities=22%  Similarity=0.318  Sum_probs=224.3

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA  159 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  159 (407)
                      |...|.++.|++ +|+.+++++.|+.+++|+....+  ....+.+|...+.+                       +.+.+
T Consensus       158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~-----------------------~~fs~  213 (456)
T KOG0266|consen  158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSD-----------------------VAFSP  213 (456)
T ss_pred             ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceee-----------------------eEECC
Confidence            478999999999 88899999999999999997666  44444444433211                       12222


Q ss_pred             cCCCCCccccccCCCCCCCCCC-CCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899          160 SGGANSKNASKSGGNGDKPLES-PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                      .+   ..+++++.|+++++||. ..+..++++++|...|++++|+|++ +++++|+.|++|++||+++++  +...+.+|
T Consensus       214 d~---~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~--~~~~l~~h  287 (456)
T KOG0266|consen  214 DG---SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE--CVRKLKGH  287 (456)
T ss_pred             CC---cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe--EEEeeecc
Confidence            33   36888999999999999 5568889999999999999999999 999999999999999999988  78999999


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC--ceeeecCCCCC--EEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGS--PIHKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~h~~~--v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      .+.|++++|++ ++++|++++.||.|++||+.+      +.  ++..+..+..+  +++++|+|++.+++ +++.|+.++
T Consensus       288 s~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll-~~~~d~~~~  359 (456)
T KOG0266|consen  288 SDGISGLAFSP-DGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAPVTSVQFSPNGKYLL-SASLDRTLK  359 (456)
T ss_pred             CCceEEEEECC-CCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCceeEEEECCCCcEEE-EecCCCeEE
Confidence            99999999999 999999999999999999999      66  56777776655  99999999999885 999999999


Q ss_pred             EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      +||+..+..+..+.+|...+.+ .|+              ..+...+..+++|+.|+.|++|++.      ++..+..+.
T Consensus       360 ~w~l~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~i~sg~~d~~v~~~~~~------s~~~~~~l~  418 (456)
T KOG0266|consen  360 LWDLRSGKSVGTYTGHSNLVRC-IFS--------------PTLSTGGKLIYSGSEDGSVYVWDSS------SGGILQRLE  418 (456)
T ss_pred             EEEccCCcceeeecccCCccee-Eec--------------ccccCCCCeEEEEeCCceEEEEeCC------ccchhhhhc
Confidence            9999999999998888775311 111              1123338899999999999999999      899999999


Q ss_pred             hc-ccceeEeeccC
Q 046899          395 KF-KSHIFGCDKSC  407 (407)
Q Consensus       395 ~h-~~~v~~~~~s~  407 (407)
                      +| ...|..+++++
T Consensus       419 ~h~~~~~~~~~~~~  432 (456)
T KOG0266|consen  419 GHSKAAVSDLSSHP  432 (456)
T ss_pred             CCCCCceeccccCC
Confidence            99 88888888764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.6e-34  Score=253.13  Aligned_cols=264  Identities=16%  Similarity=0.206  Sum_probs=224.6

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      .|...|-++.++| ....++++-.+|.|.|||.++...+..+.-...++.                          ....
T Consensus        11 ~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvR--------------------------a~kf   63 (794)
T KOG0276|consen   11 SRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVR--------------------------AAKF   63 (794)
T ss_pred             ccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchh--------------------------hhee
Confidence            4899999999999 667888999999999999998876665543322211                          1111


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                      -.-.+.+++|+.|..|++++.++++.+..+.+|.+.|.||+.||.. .+++++|.|-+|++||.+..- .+.+++.+|..
T Consensus        64 iaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~w-a~~qtfeGH~H  141 (794)
T KOG0276|consen   64 IARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEW-ACEQTFEGHEH  141 (794)
T ss_pred             eeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCce-eeeeEEcCcce
Confidence            1122458889999999999999999999999999999999999999 589999999999999998653 37889999999


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC--CCEEEEeeCCCeEEEEeC
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~ll~s~~~d~~i~vwd~  318 (407)
                      .|.+++|+|.|.+.||+++.|++|++|.+..      ..+..++++|...|+|+.|-+.|  ++| +||++|.+|+|||.
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs------~~~nfTl~gHekGVN~Vdyy~~gdkpyl-IsgaDD~tiKvWDy  214 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGS------PHPNFTLEGHEKGVNCVDYYTGGDKPYL-ISGADDLTIKVWDY  214 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCC------CCCceeeeccccCcceEEeccCCCcceE-EecCCCceEEEeec
Confidence            9999999999999999999999999999998      78999999999999999998755  677 59999999999999


Q ss_pred             CCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccc
Q 046899          319 EKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKS  398 (407)
Q Consensus       319 ~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~  398 (407)
                      .+..+++++++|...|..+.|.|.                  -..|++|+.||++|||+-.      +-.....+.---.
T Consensus       215 Qtk~CV~TLeGHt~Nvs~v~fhp~------------------lpiiisgsEDGTvriWhs~------Ty~lE~tLn~gle  270 (794)
T KOG0276|consen  215 QTKSCVQTLEGHTNNVSFVFFHPE------------------LPIIISGSEDGTVRIWNSK------TYKLEKTLNYGLE  270 (794)
T ss_pred             chHHHHHHhhcccccceEEEecCC------------------CcEEEEecCCccEEEecCc------ceehhhhhhcCCc
Confidence            999999999999999999999877                  4679999999999999987      4445555554455


Q ss_pred             ceeEee
Q 046899          399 HIFGCD  404 (407)
Q Consensus       399 ~v~~~~  404 (407)
                      .|+|++
T Consensus       271 RvW~I~  276 (794)
T KOG0276|consen  271 RVWCIA  276 (794)
T ss_pred             eEEEEe
Confidence            666665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=9.4e-33  Score=241.63  Aligned_cols=326  Identities=17%  Similarity=0.214  Sum_probs=250.5

Q ss_pred             EEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899           41 SCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ  116 (407)
Q Consensus        41 s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  116 (407)
                      +|++-|    .++|++.|+.+.+|-+        .|+.-......|..-|+|++|+| +|+++||++.||+|.+||-.++
T Consensus       152 s~~~KpsRPfRi~T~sdDn~v~ffeG--------PPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  152 SVDFKPSRPFRIATGSDDNTVAFFEG--------PPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             eeeccCCCceEEEeccCCCeEEEeeC--------CCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCc
Confidence            555544    3889999999999922        23333344446999999999999 8999999999999999999999


Q ss_pred             CCccccc---CcCCCC------CCC--------CCcEEEEeccccccccccCCCCC-cccccCCC--CCccccccCCCCC
Q 046899          117 PNRHAVL---GAADSH------PDL--------DQSVVLWSIQDHVSALAAEPGSA-KSTASGGA--NSKNASKSGGNGD  176 (407)
Q Consensus       117 ~~~~~~~---~~~~~~------~~~--------d~~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i  176 (407)
                      +.+..+.   .|...+      |+.        |.++++||+.+....-....... .-...|.+  ...+++.+.+|.+
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i  302 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI  302 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence            9887776   344332      222        99999999998744333222211 11111111  3567889999999


Q ss_pred             CCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce---------ee-------------
Q 046899          177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV---------KV-------------  234 (407)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~-------------  234 (407)
                      ..++.....+...+.+|...|+++..+|++ .+|++|+.||.|.-||..++....+         ..             
T Consensus       303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g  381 (603)
T KOG0318|consen  303 NYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG  381 (603)
T ss_pred             EEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence            999999999999999999999999999999 8999999999999999876521000         00             


Q ss_pred             -------------------------------------------------eccc--------CcceEEEEecCCCCCEEEE
Q 046899          235 -------------------------------------------------EKAH--------NADIHCVDWNPHDVNLILT  257 (407)
Q Consensus       235 -------------------------------------------------~~~~--------~~~v~~l~~~~~~~~~l~t  257 (407)
                                                                       ++.+        .-...+++++| ++..++.
T Consensus       382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaV  460 (603)
T KOG0318|consen  382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAV  460 (603)
T ss_pred             cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEE
Confidence                                                             0000        01235788888 8999999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccC
Q 046899          258 GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIH  336 (407)
Q Consensus       258 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~  336 (407)
                      |+.||.|++|.+....    ......+..|.++|++++|+||+.+| |+|...+.+-+||+.+.+....... |...|.+
T Consensus       461 GG~Dgkvhvysl~g~~----l~ee~~~~~h~a~iT~vaySpd~~yl-a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~  535 (603)
T KOG0318|consen  461 GGQDGKVHVYSLSGDE----LKEEAKLLEHRAAITDVAYSPDGAYL-AAGDASRKVVLYDVASREVKTNRWAFHTAKINC  535 (603)
T ss_pred             ecccceEEEEEecCCc----ccceeeeecccCCceEEEECCCCcEE-EEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence            9999999999998622    23334556799999999999999976 7999999999999998776544444 8899999


Q ss_pred             CCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899          337 PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       337 ~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~  405 (407)
                      ++|||+                  +..+++|++|.+|.||++..     ..+.+....+|...|+.|+|
T Consensus       536 ~aWsP~------------------n~~vATGSlDt~Viiysv~k-----P~~~i~iknAH~~gVn~v~w  581 (603)
T KOG0318|consen  536 VAWSPN------------------NKLVATGSLDTNVIIYSVKK-----PAKHIIIKNAHLGGVNSVAW  581 (603)
T ss_pred             EEeCCC------------------ceEEEeccccceEEEEEccC-----hhhheEeccccccCceeEEE
Confidence            999999                  88999999999999999973     34446667789999999988

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.4e-34  Score=238.79  Aligned_cols=263  Identities=18%  Similarity=0.335  Sum_probs=205.8

Q ss_pred             EEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc
Q 046899           42 CRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH  120 (407)
Q Consensus        42 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~  120 (407)
                      +|+-. .+++|.-|+++++|-.        ....-...+.||+|.|.|+.|.   .++|++|+.|.+|+|||+++++++.
T Consensus       203 lQYDD~kiVSGlrDnTikiWD~--------n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  203 LQYDDEKIVSGLRDNTIKIWDK--------NSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             EEecchhhhcccccCceEEecc--------ccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhh
Confidence            34433 3788999999999911        1112234566999999999984   4699999999999999999999999


Q ss_pred             cccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC---ceeeEeecccCE
Q 046899          121 AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG---ARGKYLGHEDTV  197 (407)
Q Consensus       121 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v  197 (407)
                      ++..|...+-.+       .+.                     +...++.+.|.++.+||+....   +.+.+.+|...|
T Consensus       272 tlihHceaVLhl-------rf~---------------------ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV  323 (499)
T KOG0281|consen  272 TLIHHCEAVLHL-------RFS---------------------NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  323 (499)
T ss_pred             HHhhhcceeEEE-------EEe---------------------CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence            988876543211       000                     1234556666666666665443   335567999999


Q ss_pred             EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899          198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV  277 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~  277 (407)
                      +.+.|+.   +++++++.|.+|++|++.+.+  .+.++.+|...|-|+.+   .++++++|+.|.+|++||+..      
T Consensus       324 NvVdfd~---kyIVsASgDRTikvW~~st~e--fvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~------  389 (499)
T KOG0281|consen  324 NVVDFDD---KYIVSASGDRTIKVWSTSTCE--FVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC------  389 (499)
T ss_pred             eeecccc---ceEEEecCCceEEEEecccee--eehhhhcccccceehhc---cCeEEEecCCCceEEEEeccc------
Confidence            9999975   589999999999999999998  89999999999999988   569999999999999999999      


Q ss_pred             CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc---------cccCCCcccCCCCcCcchhccc
Q 046899          278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD---------YGELKYPIIHPAYSSDMLDIET  348 (407)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~---------~~~~~~~v~~~~~s~d~~~~~~  348 (407)
                      +.+++.+++|+.-|.++.|.  .+.+ ++|+.||+|++||+......+.         +..|.+.|..+.|         
T Consensus       390 G~cLRvLeGHEeLvRciRFd--~krI-VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---------  457 (499)
T KOG0281|consen  390 GACLRVLEGHEELVRCIRFD--NKRI-VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---------  457 (499)
T ss_pred             cHHHHHHhchHHhhhheeec--Ccee-eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---------
Confidence            99999999999999999995  3435 6999999999999997654432         2334444444444         


Q ss_pred             cceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                                 ..-.|++.+.|.+|-|||+.+
T Consensus       458 -----------D~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  458 -----------DEFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             -----------cceEEEeccCCCeEEEEEcCC
Confidence                       356799999999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=222.49  Aligned_cols=262  Identities=20%  Similarity=0.293  Sum_probs=213.9

Q ss_pred             CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      -.+.++|.++   +++++.|+..-+|-+   ...++     .....--..-|..++|+| .++++|+|+-|....||++.
T Consensus        57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs---~TtnK-----~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   57 KIYAMDWSTDSRRIVSASQDGKLIVWDS---FTTNK-----VHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             ceeeeEecCCcCeEEeeccCCeEEEEEc---ccccc-----eeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecc
Confidence            4567899884   899999999999922   11111     111112456899999999 99999999999999999998


Q ss_pred             CC------CCcccccCcCCCCCCC-------------CCcEEEEeccccccc--cccCCCCCcccccCC-CCCccccccC
Q 046899          115 AQ------PNRHAVLGAADSHPDL-------------DQSVVLWSIQDHVSA--LAAEPGSAKSTASGG-ANSKNASKSG  172 (407)
Q Consensus       115 ~~------~~~~~~~~~~~~~~~~-------------d~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~  172 (407)
                      +.      +..+.+.+|.....+-             |.+..+||++++...  +..|.+.+..+...+ ....+++++.
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c  207 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC  207 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence            66      2334566776544322             899999999998664  455555554444443 5677999999


Q ss_pred             CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899          173 GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV  252 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  252 (407)
                      |+..++||+..+.+++++.+|+..|++++|.|+| .-|++|+.|++.++||+|..+.........-..+|++++|+. .|
T Consensus       208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG  285 (343)
T KOG0286|consen  208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG  285 (343)
T ss_pred             ccceeeeeccCcceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence            9999999999999999999999999999999999 789999999999999999987433333334456899999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      ++|++|..|..+.+||.-.      ++.+..+.+|+..|+++..+|||.- ++|||.|.++|||.
T Consensus       286 RlLfagy~d~~c~vWDtlk------~e~vg~L~GHeNRvScl~~s~DG~a-v~TgSWDs~lriW~  343 (343)
T KOG0286|consen  286 RLLFAGYDDFTCNVWDTLK------GERVGVLAGHENRVSCLGVSPDGMA-VATGSWDSTLRIWA  343 (343)
T ss_pred             cEEEeeecCCceeEeeccc------cceEEEeeccCCeeEEEEECCCCcE-EEecchhHheeecC
Confidence            9999999999999999988      8999999999999999999999995 58999999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-31  Score=215.94  Aligned_cols=277  Identities=18%  Similarity=0.249  Sum_probs=218.9

Q ss_pred             eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC---Cccccc-CcCCCCCCCCCcEEEEeccccccccc
Q 046899           74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP---NRHAVL-GAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~---~~~~~~-~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      .....+.+|.+.|..++|+|-.|.+||||+.|+.||+|+..++.   +...+. +|..                      
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkr----------------------   62 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKR----------------------   62 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchh----------------------
Confidence            44556678999999999999448899999999999999998532   111111 1111                      


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCC--CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESP--SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG  227 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~  227 (407)
                          .+...+..+....+++++.|.++.||.-.  ..+++.++.+|+..|.|++|+++| ++||+++.|..|-||.+...
T Consensus        63 ----sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   63 ----SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             ----eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCC
Confidence                11112222233468889999999998664  456788999999999999999999 89999999999999999854


Q ss_pred             C-CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899          228 S-TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       228 ~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                      . ..+...++.|...|..+.|+| ...+|+++++|.+|++|+-.....   ..++.++.+|+..|.+++|+|.|..| ++
T Consensus       138 dEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ddd---W~c~~tl~g~~~TVW~~~F~~~G~rl-~s  212 (312)
T KOG0645|consen  138 DEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDD---WECVQTLDGHENTVWSLAFDNIGSRL-VS  212 (312)
T ss_pred             CcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCC---eeEEEEecCccceEEEEEecCCCceE-EE
Confidence            3 336678899999999999999 889999999999999998763111   78999999999999999999999866 79


Q ss_pred             eeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC
Q 046899          307 SAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP  385 (407)
Q Consensus       307 ~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~  385 (407)
                      ++.|++++||-...     .++ .|..+++.+++.                    +..|++++.|+.|+|+........+
T Consensus       213 ~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--------------------~~~IaS~ggD~~i~lf~~s~~~d~p  267 (312)
T KOG0645|consen  213 CSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--------------------NGVIASGGGDDAIRLFKESDSPDEP  267 (312)
T ss_pred             ecCCcceEeeeecc-----CcchhcccceEeeeec--------------------ccceEeccCCCEEEEEEecCCCCCc
Confidence            99999999998662     222 244556666661                    5679999999999999998766777


Q ss_pred             hHHHHHH-HhhcccceeEeeccC
Q 046899          386 EEEVLAE-LDKFKSHIFGCDKSC  407 (407)
Q Consensus       386 ~~~~~~~-~~~h~~~v~~~~~s~  407 (407)
                      ..+++.. -..|...|++|+|+|
T Consensus       268 ~~~l~~~~~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  268 SWNLLAKKEGAHEVDVNSVQWNP  290 (312)
T ss_pred             hHHHHHhhhcccccccceEEEcC
Confidence            7777774 446999999999975

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-31  Score=242.93  Aligned_cols=328  Identities=17%  Similarity=0.239  Sum_probs=247.7

Q ss_pred             CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      ...+++|..+   +++++.|...|+|-..      .........+.+|.+.|.+.-|.. +..-+.|.+.||.+.+|.+.
T Consensus       147 di~si~Ws~DSr~l~~gsrD~s~rl~~v~------~~k~~~~~~l~gHkd~VvacfF~~-~~~~l~tvskdG~l~~W~~~  219 (893)
T KOG0291|consen  147 DITSIDWSDDSRLLVTGSRDLSARLFGVD------GNKNLFTYALNGHKDYVVACFFGA-NSLDLYTVSKDGALFVWTCD  219 (893)
T ss_pred             ceeEEEeccCCceEEeccccceEEEEEec------cccccceEeccCCCcceEEEEecc-CcceEEEEecCceEEEEEec
Confidence            5667899664   8889999999999433      222255667779999999998887 77789999999999999988


Q ss_pred             CCCCccc-----ccCcCCCC--------------------------CCC-----------------CCcEEEEecccccc
Q 046899          115 AQPNRHA-----VLGAADSH--------------------------PDL-----------------DQSVVLWSIQDHVS  146 (407)
Q Consensus       115 ~~~~~~~-----~~~~~~~~--------------------------~~~-----------------d~~i~~w~~~~~~~  146 (407)
                      ..+....     ..+.....                          ..+                 .|...++.+..-..
T Consensus       220 ~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l  299 (893)
T KOG0291|consen  220 LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL  299 (893)
T ss_pred             CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE
Confidence            3321100     00000000                          000                 44444555444322


Q ss_pred             --ccccCCCCCcccccCCCCCcccccc-CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 046899          147 --ALAAEPGSAKSTASGGANSKNASKS-GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD  223 (407)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  223 (407)
                        .+......+..+........++.++ .-|.+.+|+.++..-+...++|...+++++++|+| .++|+|++||+|++||
T Consensus       300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWN  378 (893)
T ss_pred             EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEe
Confidence              1222222222333333334455544 44789999999988888889999999999999999 8999999999999999


Q ss_pred             cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCC
Q 046899          224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSS  302 (407)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~  302 (407)
                      .+++-  |..++..|++.|+.+.|+. .++.+++.+.||+|+.||+..      ....++|... .....|++..|.|. 
T Consensus       379 ~~Sgf--C~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkR------YrNfRTft~P~p~QfscvavD~sGe-  448 (893)
T KOG0291|consen  379 TQSGF--CFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKR------YRNFRTFTSPEPIQFSCVAVDPSGE-  448 (893)
T ss_pred             ccCce--EEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecc------cceeeeecCCCceeeeEEEEcCCCC-
Confidence            99999  8999999999999999999 999999999999999999998      7888888763 34578889999999 


Q ss_pred             EEEEeeCCC-eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899          303 VFGSSAEDG-ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL  381 (407)
Q Consensus       303 ll~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~  381 (407)
                      |++.|+.|. .|.+|++++++.+..+.+|.+||.+++|+|+                  +..|+++|-|.+||+||+-+ 
T Consensus       449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~------------------~~~LaS~SWDkTVRiW~if~-  509 (893)
T KOG0291|consen  449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD------------------GSLLASGSWDKTVRIWDIFS-  509 (893)
T ss_pred             EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc------------------cCeEEeccccceEEEEEeec-
Confidence            445666664 5999999999999999999999999999998                  88999999999999999973 


Q ss_pred             ccCChHHHHHHHhhcccceeEeeccC
Q 046899          382 IYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       382 ~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                          ....+..++ +..-|++|+|+|
T Consensus       510 ----s~~~vEtl~-i~sdvl~vsfrP  530 (893)
T KOG0291|consen  510 ----SSGTVETLE-IRSDVLAVSFRP  530 (893)
T ss_pred             ----cCceeeeEe-eccceeEEEEcC
Confidence                112233333 566778888875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.3e-33  Score=251.00  Aligned_cols=268  Identities=19%  Similarity=0.240  Sum_probs=220.3

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC----Ccccc
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP----NRHAV  122 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~----~~~~~  122 (407)
                      .++.+++....|++         +.+...+....||+..|.++.... .|.+|+||+.|.++++|.++.+.    +....
T Consensus       338 ~laVATNs~~lr~y---------~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~  407 (775)
T KOG0319|consen  338 HLAVATNSPELRLY---------TLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQA  407 (775)
T ss_pred             eEEEEeCCCceEEE---------ecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence            36667777778888         344555667779999999999554 67899999999999999885443    33344


Q ss_pred             cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc---------eeeEeec
Q 046899          123 LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA---------RGKYLGH  193 (407)
Q Consensus       123 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---------~~~~~~~  193 (407)
                      .+|...+..+    .+                     .-.-.+.+++++.|.++++|++...+.         ..+...|
T Consensus       408 ~gH~~svgav----a~---------------------~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH  462 (775)
T KOG0319|consen  408 NGHTNSVGAV----AG---------------------SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH  462 (775)
T ss_pred             ccccccccee----ee---------------------cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence            4555443211    11                     001124567788888888888765211         1123469


Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      ...|+|++.+|++ .++|+||.|.+.+||++.+..  ....+.+|...|.|+.|+| ..+.+||++.|++|+||.+.+  
T Consensus       463 dKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~--  536 (775)
T KOG0319|consen  463 DKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIST--  536 (775)
T ss_pred             cccccceEecCCC-ceEEecccccceeeecccCce--EEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecc--
Confidence            9999999999999 899999999999999999766  7889999999999999999 778999999999999999999  


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceee
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS  353 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  353 (407)
                          +.++.+|.+|+..|..+.|-.+|.+|+ |++.||-|++|++++..++.++..|...|++++-+++           
T Consensus       537 ----fSClkT~eGH~~aVlra~F~~~~~qli-S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~-----------  600 (775)
T KOG0319|consen  537 ----FSCLKTFEGHTSAVLRASFIRNGKQLI-SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL-----------  600 (775)
T ss_pred             ----ceeeeeecCccceeEeeeeeeCCcEEE-eccCCCcEEEEeccchhhhhhhhhccceeEEEeecCc-----------
Confidence                899999999999999999999999875 9999999999999999999999999999999988887           


Q ss_pred             eeEeeCccceeeeEEEeeeEEEeec
Q 046899          354 IGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       354 ~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                             ...+++|+.||.|.+|.=
T Consensus       601 -------~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  601 -------LDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             -------cceeEecCCCeEEEEeec
Confidence                   778999999999999954

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.2e-33  Score=244.85  Aligned_cols=281  Identities=18%  Similarity=0.253  Sum_probs=238.8

Q ss_pred             CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC-CCCcccccCcCCCCCCC--------------CCc
Q 046899           71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA-QPNRHAVLGAADSHPDL--------------DQS  135 (407)
Q Consensus        71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~--------------d~~  135 (407)
                      .|........+|+..|+++.|+|..+.+|++|+.|+.|+||++.. +.+++++.+|...+.+.              |+.
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            466667777899999999999999999999999999999999987 78899999998777665              999


Q ss_pred             EEEEeccccccccccCCCC----CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEE
Q 046899          136 VVLWSIQDHVSALAAEPGS----AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFC  211 (407)
Q Consensus       136 i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  211 (407)
                      +++||.+++.....++.+.    +.+.+.+  ...+++|+.++.|+.||+.+++.++.+..|-+.|..+.|-+.+ ..|+
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g-~rFi  358 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG-RRFI  358 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC-ceEe
Confidence            9999999998777666553    4455555  5788999999999999999999999999999999999999999 8999


Q ss_pred             EEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC--C
Q 046899          212 SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS--A  289 (407)
Q Consensus       212 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~--~  289 (407)
                      +++.|+++++|+.+.+.. .......+.-...++..+| .+.+++.-+.|..|.+|.+.....   ......+++|.  +
T Consensus       359 ssSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh~vaG  433 (503)
T KOG0282|consen  359 SSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGHSVAG  433 (503)
T ss_pred             eeccCccEEEEEcCCCcc-chhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccc---cCHhhhhcceeccC
Confidence            999999999999998762 1122222333456899999 889999999999999999876432   34456777875  4


Q ss_pred             CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE
Q 046899          290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM  369 (407)
Q Consensus       290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  369 (407)
                      .-..+.|||||++| ++|..||.+.+||.++.+.+..+.+|++++..+.|.|-.                 ...+++++-
T Consensus       434 ys~~v~fSpDG~~l-~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e-----------------~Skvat~~w  495 (503)
T KOG0282|consen  434 YSCQVDFSPDGRTL-CSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE-----------------PSKVATCGW  495 (503)
T ss_pred             ceeeEEEcCCCCeE-EeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC-----------------cceeEeccc
Confidence            46678999999977 699999999999999999999999999999999987752                 778999999


Q ss_pred             eeeEEEee
Q 046899          370 VKVLEIWR  377 (407)
Q Consensus       370 d~~i~iwd  377 (407)
                      ||.|++|+
T Consensus       496 ~G~Ikiwd  503 (503)
T KOG0282|consen  496 DGLIKIWD  503 (503)
T ss_pred             CceeEecC
Confidence            99999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-32  Score=218.53  Aligned_cols=239  Identities=25%  Similarity=0.397  Sum_probs=205.1

Q ss_pred             EEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899           41 SCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ  116 (407)
Q Consensus        41 s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  116 (407)
                      .+.|.+    .+++++.|+..|||.       ...|...+.....|..+|.++.|++...+.+++++.|++|++|+....
T Consensus        65 dV~Wse~~e~~~~~a~GDGSLrl~d-------~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~  137 (311)
T KOG0277|consen   65 DVAWSENHENQVIAASGDGSLRLFD-------LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP  137 (311)
T ss_pred             EeeecCCCcceEEEEecCceEEEec-------cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence            456766    377889999999992       233444444555899999999999988899999999999999998643


Q ss_pred             CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC
Q 046899          117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT  196 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~  196 (407)
                                                                                          +.++++.+|...
T Consensus       138 --------------------------------------------------------------------~Sv~Tf~gh~~~  149 (311)
T KOG0277|consen  138 --------------------------------------------------------------------NSVQTFNGHNSC  149 (311)
T ss_pred             --------------------------------------------------------------------cceEeecCCccE
Confidence                                                                                235667789999


Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG  276 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~  276 (407)
                      |...+|+|..+++|++++.|+.+++||++...  ....+..|..++.|+.|+..+.++++||+.|+.|++||+|+.    
T Consensus       150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~----  223 (311)
T KOG0277|consen  150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL----  223 (311)
T ss_pred             EEEEecCCCCCCeEEEccCCceEEEEEecCCC--ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc----
Confidence            99999999988999999999999999999876  345588999999999999989999999999999999999997    


Q ss_pred             CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCCCCcCcchhccccceeeee
Q 046899          277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIG  355 (407)
Q Consensus       277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~  355 (407)
                       ..++.++.+|.-.|+.|+|||....+|||++.|=++|+||..... .+.++..|..-+.++.||+-             
T Consensus       224 -r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~-------------  289 (311)
T KOG0277|consen  224 -RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF-------------  289 (311)
T ss_pred             -cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc-------------
Confidence             488999999999999999999998899999999999999999554 45667778888888888764             


Q ss_pred             EeeCccceeeeEEEeeeEEEeec
Q 046899          356 MHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       356 ~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                          ...++++.+=|+.++||+.
T Consensus       290 ----~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  290 ----DPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ----cCceeeecccccceeeecc
Confidence                1778999999999999984

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=100.00  E-value=1e-31  Score=226.26  Aligned_cols=285  Identities=27%  Similarity=0.439  Sum_probs=201.1

Q ss_pred             CceEEEeeeecccCCCeeEEEEeec--------------ccc-----cCccceEEEEeec----------------ccCc
Q 046899           23 VPVLYDWLANHNLVWPSLSCRWGPQ--------------LEQ-----ATYKNRQRLYLSE----------------QFNE   67 (407)
Q Consensus        23 ~~~~y~~l~~~~~~~p~~s~~~~~~--------------~~~-----~~~~~~~~i~~~~----------------~~~~   67 (407)
                      .|..|.+++.....||+++++-.|+              ++.     ...++.+-++-..                ..+.
T Consensus        56 DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edd  135 (440)
T KOG0302|consen   56 DPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDD  135 (440)
T ss_pred             CHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccc
Confidence            5778999999999999999998763              111     1223333333222                0111


Q ss_pred             ccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccc
Q 046899           68 EARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVS  146 (407)
Q Consensus        68 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~  146 (407)
                      +++..+....+.++|.+.++.++-.+. +..+.|+-+..|.|.||++...-  ..+......+..        .......
T Consensus       136 edD~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~~~~~~~~~--------s~~~Pl~  205 (440)
T KOG0302|consen  136 EDDRKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALSEPGLEVKD--------SEFRPLF  205 (440)
T ss_pred             hhhccccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhcCccccccc--------cccCceE
Confidence            122234446677889999999998875 55678888899999999987432  111111111000        0001111


Q ss_pred             ccccCCCCCcccccCCC-CCccccccCCCCCCCCCCCCcCc---eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899          147 ALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESPSIGA---RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW  222 (407)
Q Consensus       147 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  222 (407)
                      .+..+......+..... ...+++|...+.|++|...++.-   ...+.+|+..|..|+|+|.....|++||.||+|+||
T Consensus       206 t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIW  285 (440)
T KOG0302|consen  206 TFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIW  285 (440)
T ss_pred             EecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEE
Confidence            12222221111111111 12256677778888888766542   234567999999999999988899999999999999


Q ss_pred             EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899          223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS  302 (407)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  302 (407)
                      |+|.+.+........|.+.|+.|+|+. ...+||+|+.||+++|||+|..+.   ++++.+|+.|..+|++|.|+|....
T Consensus       286 DiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~---~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  286 DIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS---GQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC---CCcceeEEeccCCeeEEEeccccCc
Confidence            999985444445589999999999999 667999999999999999999776   6899999999999999999999888


Q ss_pred             EEEEeeCCCeEEEEeCCCC
Q 046899          303 VFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       303 ll~s~~~d~~i~vwd~~~~  321 (407)
                      +|++++.|.+|.+||+...
T Consensus       362 ~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eEEeccCCCcEEEEEeecc
Confidence            8999999999999999853

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.6e-31  Score=225.15  Aligned_cols=280  Identities=19%  Similarity=0.323  Sum_probs=212.1

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCC--eEEEEeeCCCcEEEEeCcCCCCcc----
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNS--KIVATHTDSPDVLIWDVEAQPNRH----  120 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~tg~~dg~i~vwd~~~~~~~~----  120 (407)
                      .+.+++||+..|+|         +..-.......||.++|.+++|.-.+.  ..|++++.|.++++|.++.++...    
T Consensus       117 ~IltgsYDg~~riW---------d~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~  187 (423)
T KOG0313|consen  117 WILTGSYDGTSRIW---------DLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK  187 (423)
T ss_pred             eEEEeecCCeeEEE---------ecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence            48899999999999         333344666679999999888865332  369999999999999998775432    


Q ss_pred             cccCcCCCCCCC--------------CCcEEEEecccccc-ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC
Q 046899          121 AVLGAADSHPDL--------------DQSVVLWSIQDHVS-ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG  185 (407)
Q Consensus       121 ~~~~~~~~~~~~--------------d~~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~  185 (407)
                      .-.+|...+..+              |..+.+|+...... .+........                ...-+-=....+.
T Consensus       188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr----------------k~~~~~~~~~~r~  251 (423)
T KOG0313|consen  188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR----------------KKQKREKEGGTRT  251 (423)
T ss_pred             HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh----------------hhhhhhhcccccC
Confidence            223565544332              77777777332210 0000000000                0000000113456


Q ss_pred             ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      ++..+.+|.++|.++.|++.  ..+++++.|.+|+.||+.++.  ....+ ..+..++|++.+| ..++|++|+.|..|+
T Consensus       252 P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~--~~~~~-~~~ksl~~i~~~~-~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGG--LKSTL-TTNKSLNCISYSP-LSKLLASGSSDRHIR  325 (423)
T ss_pred             ceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccc--ceeee-ecCcceeEeeccc-ccceeeecCCCCcee
Confidence            77888999999999999984  489999999999999999998  44444 4567789999999 899999999999999


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCCCCcCcch
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHPAYSSDML  344 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~  344 (407)
                      +||.|+...   .....+|.+|...|.++.|+|...++|++++.|+++++||+++.+ .+..+.+|...|.++.|+.   
T Consensus       326 l~DPR~~~g---s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~---  399 (423)
T KOG0313|consen  326 LWDPRTGDG---SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE---  399 (423)
T ss_pred             ecCCCCCCC---ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC---
Confidence            999998542   345678999999999999999999999999999999999999987 7788889988888888743   


Q ss_pred             hccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          345 DIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                      +..|++|+.|.+|+|+.-.
T Consensus       400 ----------------~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  400 ----------------GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ----------------CceEEeccCcceEEEeccc
Confidence                            5689999999999999754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.3e-32  Score=246.13  Aligned_cols=242  Identities=15%  Similarity=0.207  Sum_probs=195.6

Q ss_pred             CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEE
Q 046899          133 DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS  212 (407)
Q Consensus       133 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s  212 (407)
                      .+++++|+..+..+......+......+-+.+..++.|...|.+.++|+.+...+.+.++|.+.|..++.+|++ ..+++
T Consensus       393 ~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT  471 (888)
T KOG0306|consen  393 GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVT  471 (888)
T ss_pred             CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEE
Confidence            35566666655544444333333333333344456667777777777777777777777899999999999999 78999


Q ss_pred             EeCCCcEEEEEcCCCC-----CCcee-----eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899          213 VGDDSCLILWDARSGS-----TPAVK-----VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH  282 (407)
Q Consensus       213 ~~~dg~i~iwd~~~~~-----~~~~~-----~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  282 (407)
                      ||.|.+|++||+.--.     +....     ....-...|.|+.++| |+++|+++-.|.+|+||-+.+      .+...
T Consensus       472 ~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt------lKFfl  544 (888)
T KOG0306|consen  472 GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT------LKFFL  544 (888)
T ss_pred             ecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc------eeeee
Confidence            9999999999975311     10111     1123457899999999 999999999999999999999      78888


Q ss_pred             eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccc
Q 046899          283 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR  362 (407)
Q Consensus       283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~  362 (407)
                      ++.+|.-||.|+..+||+. +++|||.|++|++|-+.-+.+..++.+|+..|.++.|-|.                  ..
T Consensus       545 sLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~------------------~~  605 (888)
T KOG0306|consen  545 SLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK------------------TH  605 (888)
T ss_pred             eecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc------------------ce
Confidence            9999999999999999999 5579999999999999999999999999999999999776                  67


Q ss_pred             eeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          363 LLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       363 ~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      ...+++-|+.|+-||-.      .-++++.+.||...|+|+|.++
T Consensus       606 ~FFt~gKD~kvKqWDg~------kFe~iq~L~~H~~ev~cLav~~  644 (888)
T KOG0306|consen  606 LFFTCGKDGKVKQWDGE------KFEEIQKLDGHHSEVWCLAVSP  644 (888)
T ss_pred             eEEEecCcceEEeechh------hhhhheeeccchheeeeeEEcC
Confidence            78899999999999988      7899999999999999999765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.6e-31  Score=217.57  Aligned_cols=284  Identities=16%  Similarity=0.220  Sum_probs=232.0

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      ..+-..+.+.|.|+   ++++++|..+-+|..  +.+.++     .-++.+|.++|..+.|.+ +++.|++++.|.+|+.
T Consensus        45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv--~gdceN-----~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNV--YGDCEN-----FWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRG  116 (338)
T ss_pred             CCcceEEEEEECCCCCeEeecCCcceEEEEec--cccccc-----eeeeccccceeEeeeecc-CCCEEEEecCCceEEE
Confidence            34556677889885   899999998888821  222222     233349999999999999 8899999999999999


Q ss_pred             EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899          111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY  190 (407)
Q Consensus       111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  190 (407)
                      ||.+++++.....+|...+...+       .                  .-.-...+.+++.|+++++||+.+...++++
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~-------p------------------~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLD-------P------------------SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             EecccceeeehhccccceeeecC-------c------------------cccCCeEEEecCCCceEEEEeecccchhhcc
Confidence            99999999999888876643220       0                  0011123556888999999999988888877


Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      . ...+++++.|..++ ..+.+|+-|+.|++||++...  ....+.+|...|+.+..+| ++.++.+-+.|.++++||++
T Consensus       172 ~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d--~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  172 E-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND--GLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             c-cceeEEEEEecccc-cceeeccccCceeeeccccCc--ceEEeecccCceeeEEecc-CCCccccccccceEEEEEec
Confidence            4 45679999999888 789999999999999999888  7889999999999999999 99999999999999999999


Q ss_pred             CCCCCCCCCceeeecCCC----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899          271 KLTSDGVGSPIHKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI  346 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~  346 (407)
                      .....  ..++..+.+|.    ......+|+|++..+ ..|+.|+.+.+||......+..+++|.+.|.+++|.|.    
T Consensus       247 p~~p~--~R~v~if~g~~hnfeknlL~cswsp~~~~i-~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~----  319 (338)
T KOG0265|consen  247 PFAPS--QRCVKIFQGHIHNFEKNLLKCSWSPNGTKI-TAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPT----  319 (338)
T ss_pred             ccCCC--CceEEEeecchhhhhhhcceeeccCCCCcc-ccccccceEEEeecccccEEEEcCCcceeEEEeeecCC----
Confidence            74432  24477777653    245677899999976 69999999999999998999999999999999999887    


Q ss_pred             cccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                                    ...|.+++.|.+|++=
T Consensus       320 --------------e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  320 --------------EPIILSCSSDKTIYLG  335 (338)
T ss_pred             --------------CcEEEEeccCceeEee
Confidence                          7889999999998763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.3e-31  Score=234.00  Aligned_cols=267  Identities=25%  Similarity=0.415  Sum_probs=218.9

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CCC--------CCcEEEEeccccc-
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PDL--------DQSVVLWSIQDHV-  145 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~--------d~~i~~w~~~~~~-  145 (407)
                      +|.++|++++|+| ++++|++++.||.|++|++.+......+..+...+      ++.        ++.+.+|++.... 
T Consensus         7 ~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~   85 (289)
T cd00200           7 GHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC   85 (289)
T ss_pred             ccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence            7999999999999 78899999999999999998776554444443332      111        8999999998742 


Q ss_pred             -cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 046899          146 -SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDA  224 (407)
Q Consensus       146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  224 (407)
                       ..+..+...+..+........+++++.++.+.+||..+++....+..|...|.+++|+|++ .++++++.|+.|++||+
T Consensus        86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~  164 (289)
T cd00200          86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDL  164 (289)
T ss_pred             eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEc
Confidence             2333333333333333333455556669999999999888888888899999999999987 78888888999999999


Q ss_pred             CCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899          225 RSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF  304 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll  304 (407)
                      ++++  ....+..|...+.+++|+| +++.+++++.||.|++||++.      ++++..+..|...+.+++|+|++. ++
T Consensus       165 ~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~~  234 (289)
T cd00200         165 RTGK--CVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHENGVNSVAFSPDGY-LL  234 (289)
T ss_pred             cccc--cceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCC------CceecchhhcCCceEEEEEcCCCc-EE
Confidence            9777  5666678888999999999 888899999999999999998      788888888999999999999966 55


Q ss_pred             EEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899          305 GSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR  377 (407)
Q Consensus       305 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd  377 (407)
                      ++++.|+.|++||+.+.+....+..+..++.+++|+++                  +..+++++.|+.|++|+
T Consensus       235 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD------------------GKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC------------------CCEEEEecCCCeEEecC
Confidence            67777999999999988888888888888888888887                  78899999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.2e-31  Score=212.52  Aligned_cols=251  Identities=18%  Similarity=0.282  Sum_probs=198.6

Q ss_pred             CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899           95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN  174 (407)
Q Consensus        95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (407)
                      ..-+|+|++.|.+||+|...++.+..++...       |+.+--..+..                .    ...++++...
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~-------dsqVNrLeiTp----------------d----k~~LAaa~~q   61 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHP-------DSQVNRLEITP----------------D----KKDLAAAGNQ   61 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecC-------ccceeeEEEcC----------------C----cchhhhccCC
Confidence            4569999999999999999999988776544       22222222221                1    1234455566


Q ss_pred             CCCCCCCCCcC--ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899          175 GDKPLESPSIG--ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV  252 (407)
Q Consensus       175 ~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  252 (407)
                      .|+++|+.+..  ++.++.+|+..|+++.|..+| +.+++|++||+++|||+|...  +.+. ..|.++|+++..+| +.
T Consensus        62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~--~qR~-~~~~spVn~vvlhp-nQ  136 (311)
T KOG0315|consen   62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS--CQRN-YQHNSPVNTVVLHP-NQ  136 (311)
T ss_pred             eeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc--cchh-ccCCCCcceEEecC-Cc
Confidence            77888877655  588999999999999999999 899999999999999999966  4444 46789999999999 88


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC------ccc
Q 046899          253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG------EKQ  325 (407)
Q Consensus       253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~------~~~  325 (407)
                      ..|++|..+|.|++||+++      ..+...+. .-..+|.++...|+|.++ +.+..-|...+|++-..+      .+.
T Consensus       137 teLis~dqsg~irvWDl~~------~~c~~~liPe~~~~i~sl~v~~dgsml-~a~nnkG~cyvW~l~~~~~~s~l~P~~  209 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGE------NSCTHELIPEDDTSIQSLTVMPDGSML-AAANNKGNCYVWRLLNHQTASELEPVH  209 (311)
T ss_pred             ceEEeecCCCcEEEEEccC------CccccccCCCCCcceeeEEEcCCCcEE-EEecCCccEEEEEccCCCccccceEhh
Confidence            8999999999999999998      44444443 345689999999999966 677788999999987632      334


Q ss_pred             ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899          326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       326 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~  405 (407)
                      .+..|..-+...-+|||                  +.+|++.|.|.+++||+....     -..-..+.+|..-|++++|
T Consensus       210 k~~ah~~~il~C~lSPd------------------~k~lat~ssdktv~iwn~~~~-----~kle~~l~gh~rWvWdc~F  266 (311)
T KOG0315|consen  210 KFQAHNGHILRCLLSPD------------------VKYLATCSSDKTVKIWNTDDF-----FKLELVLTGHQRWVWDCAF  266 (311)
T ss_pred             heecccceEEEEEECCC------------------CcEEEeecCCceEEEEecCCc-----eeeEEEeecCCceEEeeee
Confidence            56677887888888888                  899999999999999999731     1334568899999999999


Q ss_pred             cC
Q 046899          406 SC  407 (407)
Q Consensus       406 s~  407 (407)
                      |.
T Consensus       267 S~  268 (311)
T KOG0315|consen  267 SA  268 (311)
T ss_pred             cc
Confidence            84

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=4.2e-31  Score=240.31  Aligned_cols=322  Identities=19%  Similarity=0.220  Sum_probs=254.0

Q ss_pred             EEeeeecccCCCeeEEEEeeccccc-----CccceEEEEeecccCcc--cCCcceeeEEEeeCCCceEEEEEeCCCCeEE
Q 046899           27 YDWLANHNLVWPSLSCRWGPQLEQA-----TYKNRQRLYLSEQFNEE--ARSPFVKKFKTIIHPGEVNRIRELPQNSKIV   99 (407)
Q Consensus        27 y~~l~~~~~~~p~~s~~~~~~~~~~-----~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l   99 (407)
                      |..+.......-..+++|.|..-+.     -.++++..+... ....  ............||...|.+++++. +..++
T Consensus       311 i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~-~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~  388 (888)
T KOG0306|consen  311 IKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLE-NSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSILL  388 (888)
T ss_pred             HHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEec-cCCCCCccccccceeeeccchhheeEEEeec-Cceee
Confidence            3334444556666788887753332     223334444221 1111  1112223356668999999999997 77777


Q ss_pred             EEeeCCCcEEEEeCcCCCCcccccCc----CCCCCCC--------CCcEEEEeccccc--cccccCCCCCcccccCCCCC
Q 046899          100 ATHTDSPDVLIWDVEAQPNRHAVLGA----ADSHPDL--------DQSVVLWSIQDHV--SALAAEPGSAKSTASGGANS  165 (407)
Q Consensus       100 ~tg~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~--------d~~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~  165 (407)
                      ++|+. ++|++|+..+.++.+++...    ..++|..        .|.+.++|+.+..  .....|.+.+-.+...+.+.
T Consensus       389 ~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~  467 (888)
T KOG0306|consen  389 ASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK  467 (888)
T ss_pred             eecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence            77765 69999999999988877553    2233332        8899999998763  34556677777777788888


Q ss_pred             ccccccCCCCCCCCCCCCcCc-----ee--e-----EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899          166 KNASKSGGNGDKPLESPSIGA-----RG--K-----YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK  233 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~-----~~--~-----~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  233 (407)
                      .+++++.|.++++||..-...     ..  .     ...-+..|.|++++|+| .+|+.+-.|++|++|-+.+.+  ...
T Consensus       468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlK--Ffl  544 (888)
T KOG0306|consen  468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLK--FFL  544 (888)
T ss_pred             ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEeccee--eee
Confidence            899999999999998642111     11  1     11245789999999999 899999999999999999988  788


Q ss_pred             eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      .+.+|.-+|.|++.+| |+.+++||+.|..|++|-+.-      +.+-..+.+|.+.|.++.|.|... +|-|+|.|+.|
T Consensus       545 sLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF------GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kv  616 (888)
T KOG0306|consen  545 SLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF------GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKV  616 (888)
T ss_pred             eecccccceeEEeccC-CcCeEEeccCCCceEEecccc------chhhhhhhcccCceeEEEEcccce-eEEEecCcceE
Confidence            8999999999999999 999999999999999999998      999999999999999999999776 55699999999


Q ss_pred             EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      +-||-.+.+.++.+.+|...|++++.+|+                  |.+++++|.|.+||+|...+
T Consensus       617 KqWDg~kFe~iq~L~~H~~ev~cLav~~~------------------G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  617 KQWDGEKFEEIQKLDGHHSEVWCLAVSPN------------------GSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EeechhhhhhheeeccchheeeeeEEcCC------------------CCeEEeccCCceeEeeeccC
Confidence            99999999999999999999999999998                  99999999999999998865

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.5e-31  Score=236.25  Aligned_cols=253  Identities=19%  Similarity=0.293  Sum_probs=208.1

Q ss_pred             EEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEee-CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899           41 SCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTII-HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ  116 (407)
Q Consensus        41 s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  116 (407)
                      ++++.|   -+..+-+++++.||   +|+..      ...+.+. ..-+|++..|.+ ..+++++|++|..||||+.++.
T Consensus        18 sVd~HPtePw~la~LynG~V~IW---nyetq------tmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen   18 SVDFHPTEPWILAALYNGDVQIW---NYETQ------TMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             eeecCCCCceEEEeeecCeeEEE---ecccc------eeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccc
Confidence            556655   36677889999999   33222      2333332 567899999998 7889999999999999999999


Q ss_pred             CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeeccc
Q 046899          117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGHED  195 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~  195 (407)
                      +.+..+..|.+.+.                          .++..+....+++++.|-.|++||.+. ..+.+++.+|+.
T Consensus        88 ekV~~FeAH~DyIR--------------------------~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H  141 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIR--------------------------SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH  141 (794)
T ss_pred             eeeEEeecccccee--------------------------eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence            98888877766532                          222333445678888999999998865 457789999999


Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC-CCCEEEEEeCCCcEEEEeCCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLILTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~  274 (407)
                      .|.+++|+|.+++.|++++.|++|++|.+.+..  +..++.+|...|+|+++-+. +..+|++|++|.+|+|||.++   
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt---  216 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT---  216 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCCC--CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch---
Confidence            999999999999999999999999999998887  78899999999999999761 346999999999999999999   


Q ss_pred             CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCC
Q 046899          275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPA  338 (407)
Q Consensus       275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  338 (407)
                         ..+++++.+|...|..+.|+|.-+ |++|||.||++|+|+-.+.+...++.-.-..+++++
T Consensus       217 ---k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~  276 (794)
T KOG0276|consen  217 ---KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA  276 (794)
T ss_pred             ---HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence               899999999999999999999999 667999999999999999887777655555555544

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=2.9e-32  Score=228.40  Aligned_cols=276  Identities=18%  Similarity=0.289  Sum_probs=219.7

Q ss_pred             CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------------CCcEEE
Q 046899           71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------------DQSVVL  138 (407)
Q Consensus        71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------d~~i~~  138 (407)
                      .|+....  .||.+.|.|++=+|..-..+|+|+.||.|++||+....+...+..|...+.++            |.+++.
T Consensus        56 kPFv~~L--~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   56 KPFVGSL--DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQ  133 (433)
T ss_pred             ccchhhc--cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceee
Confidence            4444433  59999999999999555889999999999999999999999998888766655            899999


Q ss_pred             Eecccccc-ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC
Q 046899          139 WSIQDHVS-ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS  217 (407)
Q Consensus       139 w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg  217 (407)
                      |.++.... .+....   .+............++....|.|||.....+++.+.-....|.++.|+|....+|++|+.|+
T Consensus       134 wk~~~~p~~tilg~s---~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  134 WKIDGPPLHTILGKS---VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             eeccCCcceeeeccc---cccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            99876411 111000   00001111112233445557899999999999999988899999999999888999999999


Q ss_pred             cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc
Q 046899          218 CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS  297 (407)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~  297 (407)
                      .|.+||+++..+  +... ..+..-+.|+|+| ++..|++|+.|..++.||+|..     ..++...++|.+.|.+|+|+
T Consensus       211 sIvLyD~R~~~P--l~KV-i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l-----~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  211 SIVLYDLRQASP--LKKV-ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL-----SRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             ceEEEecccCCc--ccee-eeeccccceecCc-cccceeeccccccceehhhhhh-----cccchhhcccceeEEEeccC
Confidence            999999999883  3222 2234457899999 8999999999999999999997     47899999999999999999


Q ss_pred             CCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          298 PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       298 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                      |.|+-+ ++||.|.+|+||.++.+.....+.. .-+.|.++.||.|                  ..+|++||.|+.||+|
T Consensus       282 ptG~Ef-vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D------------------skyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  282 PTGQEF-VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD------------------SKYIISGSDDGNVRLW  342 (433)
T ss_pred             CCcchh-ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecc------------------ccEEEecCCCcceeee
Confidence            999965 7999999999999998766555443 3445778888888                  8999999999999999


Q ss_pred             ecc
Q 046899          377 RMI  379 (407)
Q Consensus       377 d~~  379 (407)
                      .-.
T Consensus       343 ka~  345 (433)
T KOG0268|consen  343 KAK  345 (433)
T ss_pred             ecc
Confidence            875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=5.7e-30  Score=224.27  Aligned_cols=320  Identities=21%  Similarity=0.277  Sum_probs=233.6

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc--ccccCcCCCCCCC------------------CCc
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR--HAVLGAADSHPDL------------------DQS  135 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~------------------d~~  135 (407)
                      ....-+|..+++-.+|+| .|.++|+|...|+|||||....+.+  .+++.....+.++                  =|.
T Consensus        52 ~~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~  130 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH  130 (603)
T ss_pred             eeeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence            344457999999999999 7999999999999999998764322  2222233333333                  245


Q ss_pred             EEEEeccccccccccCCCCCcccccCCCC-CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe
Q 046899          136 VVLWSIQDHVSALAAEPGSAKSTASGGAN-SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG  214 (407)
Q Consensus       136 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~  214 (407)
                      +.+||-.+..-++..+...+.....-+.. -.+++++.|..+.+++-+..+...++..|..-|+|+.|+|+| ..|++++
T Consensus       131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~g  209 (603)
T KOG0318|consen  131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAG  209 (603)
T ss_pred             EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEec
Confidence            66677665554555554433332222221 247789999999999999999889999999999999999999 8999999


Q ss_pred             CCCcEEEEEcCCCCCCceeeec---ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC-----------------
Q 046899          215 DDSCLILWDARSGSTPAVKVEK---AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS-----------------  274 (407)
Q Consensus       215 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-----------------  274 (407)
                      .||+|.+||-.+++  .+..+.   +|++.|.+++|+| |+..++|++.|.+++|||+.+.+-                 
T Consensus       210 sDgki~iyDGktge--~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~  286 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGE--KVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC  286 (603)
T ss_pred             CCccEEEEcCCCcc--EEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence            99999999999998  455554   8999999999999 999999999999999999876431                 


Q ss_pred             --------------------CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-ccCCCc
Q 046899          275 --------------------DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-GELKYP  333 (407)
Q Consensus       275 --------------------~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~  333 (407)
                                          ...+.++..+.+|...|+++..+|++.+|+ ||+.||.|.-||..++..-+-. ..|...
T Consensus       287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-SgsyDG~I~~W~~~~g~~~~~~g~~h~nq  365 (603)
T KOG0318|consen  287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-SGSYDGHINSWDSGSGTSDRLAGKGHTNQ  365 (603)
T ss_pred             EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE-eeccCceEEEEecCCccccccccccccce
Confidence                                001457778889999999999999999886 9999999999999887655332 334444


Q ss_pred             ccCCCCcC------------------------------------------c--------------------chhccccce
Q 046899          334 IIHPAYSS------------------------------------------D--------------------MLDIETKLL  351 (407)
Q Consensus       334 v~~~~~s~------------------------------------------d--------------------~~~~~~~~~  351 (407)
                      |.+++-+.                                          |                    +..+..+..
T Consensus       366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~  445 (603)
T KOG0318|consen  366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYE  445 (603)
T ss_pred             EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccc
Confidence            44433322                                          1                    000011111


Q ss_pred             eeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH--HHHHhhcccceeEeeccC
Q 046899          352 TSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV--LAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       352 ~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~h~~~v~~~~~s~  407 (407)
                      .+.......+..++.|..|+.|+||.++      .+++  ...+..|++.|++|++|+
T Consensus       446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~------g~~l~ee~~~~~h~a~iT~vaySp  497 (603)
T KOG0318|consen  446 SSAVAVSPDGSEVAVGGQDGKVHVYSLS------GDELKEEAKLLEHRAAITDVAYSP  497 (603)
T ss_pred             cceEEEcCCCCEEEEecccceEEEEEec------CCcccceeeeecccCCceEEEECC
Confidence            2223333345566689999999999998      3333  334668999999999996

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.8e-30  Score=242.45  Aligned_cols=299  Identities=19%  Similarity=0.268  Sum_probs=238.0

Q ss_pred             hhhhccCceEEEeeeecccCCCeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCC
Q 046899           17 TQWKSLVPVLYDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQN   95 (407)
Q Consensus        17 ~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~   95 (407)
                      ++|++....-|..+..+... -.+..+|.+ .+.+++.+..+++|       +...-......+.||.+.|.++++.. .
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~~~~s~~~tl~~~-------~~~~~~~i~~~l~GH~g~V~~l~~~~-~  260 (537)
T KOG0274|consen  190 KNWRKLFRRGYKVLLGTDDH-VVLCLQLHDGFFKSGSDDSTLHLW-------DLNNGYLILTRLVGHFGGVWGLAFPS-G  260 (537)
T ss_pred             ccccccccccceeecccCcc-hhhhheeecCeEEecCCCceeEEe-------ecccceEEEeeccCCCCCceeEEEec-C
Confidence            46666655544444432222 222335555 47788889989899       22222233344789999999999765 7


Q ss_pred             CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCC
Q 046899           96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNG  175 (407)
Q Consensus        96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (407)
                      +++|++|+.|.+++|||+.++.+...+.+|..       +++..++..                     ..+++|+.|.+
T Consensus       261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s-------tv~~~~~~~---------------------~~~~sgs~D~t  312 (537)
T KOG0274|consen  261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTS-------SVRCLTIDP---------------------FLLVSGSRDNT  312 (537)
T ss_pred             CCEEEEEecCCcEEeEecCCCcEEEEecCCCc-------eEEEEEccC---------------------ceEeeccCCce
Confidence            88999999999999999999999999988854       445544432                     12445789999


Q ss_pred             CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899          176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI  255 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  255 (407)
                      +++|+++++..+..+.+|.++|+++..+  + .++++|+.|++|++||+++++  ++..+.+|...|.++.+.+ . ..+
T Consensus       313 VkVW~v~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~-~-~~~  385 (537)
T KOG0274|consen  313 VKVWDVTNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGK--CLKSLSGHTGRVYSLIVDS-E-NRL  385 (537)
T ss_pred             EEEEeccCcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhce--eeeeecCCcceEEEEEecC-c-ceE
Confidence            9999999999999999999999999998  4 689999999999999999888  8999999999999998866 3 899


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCC-CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCc
Q 046899          256 LTGSADNSIHMFDRRKLTSDGVG-SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYP  333 (407)
Q Consensus       256 ~tg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~  333 (407)
                      ++|+.|++|++||+++      . +++.++.+|.+.|.++.+.  +.+| ++++.|++|++||...+++++.+.+ +...
T Consensus       386 ~Sgs~D~~IkvWdl~~------~~~c~~tl~~h~~~v~~l~~~--~~~L-vs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~  456 (537)
T KOG0274|consen  386 LSGSLDTTIKVWDLRT------KRKCIHTLQGHTSLVSSLLLR--DNFL-VSSSADGTIKLWDAEEGECLRTLEGRHVGG  456 (537)
T ss_pred             EeeeeccceEeecCCc------hhhhhhhhcCCcccccccccc--ccee-EeccccccEEEeecccCceeeeeccCCccc
Confidence            9999999999999999      7 8999999999999877764  4544 6999999999999999999999988 4455


Q ss_pred             ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          334 IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       334 v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      |+.+++.                    ...+++.+.|+++++||+.      .+++...+-
T Consensus       457 v~~l~~~--------------------~~~il~s~~~~~~~l~dl~------~~~~~~~l~  491 (537)
T KOG0274|consen  457 VSALALG--------------------KEEILCSSDDGSVKLWDLR------SGTLIRTLL  491 (537)
T ss_pred             EEEeecC--------------------cceEEEEecCCeeEEEecc------cCchhhhhh
Confidence            4444431                    4678899999999999998      677776653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.8e-30  Score=259.18  Aligned_cols=281  Identities=17%  Similarity=0.167  Sum_probs=207.4

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      ...|.+.|++++|+| ++++||||+.|+.|+|||+.......... + .         .+..+...        ..+...
T Consensus       479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~-~-~---------~~~~~~~~--------~~v~~l  538 (793)
T PLN00181        479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDI-H-Y---------PVVELASR--------SKLSGI  538 (793)
T ss_pred             ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCccccccccc-c-c---------ceEEeccc--------CceeeE
Confidence            345999999999999 88999999999999999986421100000 0 0         00000000        000000


Q ss_pred             ccC-CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899          159 ASG-GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA  237 (407)
Q Consensus       159 ~~~-~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  237 (407)
                      ... .....+++++.|+.+++||..+++.+..+.+|...|++++|+|.++.+|++|+.|+.|++||++++.  ....+..
T Consensus       539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~  616 (793)
T PLN00181        539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKT  616 (793)
T ss_pred             EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEEec
Confidence            111 1124578899999999999999999999999999999999998544899999999999999999877  4555543


Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                       ...+.++.|++.++.+|++|+.||.|++||++..     ..++..+.+|...|.+++|. ++.+ |++++.|++|++||
T Consensus       617 -~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~-lvs~s~D~~ikiWd  688 (793)
T PLN00181        617 -KANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSST-LVSSSTDNTLKLWD  688 (793)
T ss_pred             -CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCE-EEEEECCCEEEEEe
Confidence             4679999996657999999999999999999872     23677888999999999997 5564 46999999999999


Q ss_pred             CCCC------CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccC-----Ch
Q 046899          318 HEKI------GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYR-----PE  386 (407)
Q Consensus       318 ~~~~------~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~-----~~  386 (407)
                      ++..      ..+..+.+|...+..+.|+++                  +.+|++|+.|++|+||+.......     ..
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~------------------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~  750 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSVS------------------DGYIATGSETNEVFVYHKAFPMPVLSYKFKT  750 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcCC------------------CCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence            9853      445677788887777778776                  789999999999999997532100     00


Q ss_pred             HHHH--HHHhhcccceeEeeccC
Q 046899          387 EEVL--AELDKFKSHIFGCDKSC  407 (407)
Q Consensus       387 ~~~~--~~~~~h~~~v~~~~~s~  407 (407)
                      ...+  .....|...|.+++|++
T Consensus       751 ~~~~~~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        751 IDPVSGLEVDDASQFISSVCWRG  773 (793)
T ss_pred             CCcccccccCCCCcEEEEEEEcC
Confidence            0111  12345677899999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=8.7e-30  Score=238.47  Aligned_cols=283  Identities=19%  Similarity=0.295  Sum_probs=227.2

Q ss_pred             CCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeC
Q 046899           37 WPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDV  113 (407)
Q Consensus        37 ~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  113 (407)
                      +....+.+.|+   +++++.++.+++|...      .........+.+|...|++++|+| +++++++|+.|++|+|||+
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~------~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLE------GIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeecc------cccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeec
Confidence            34444577663   7888899999999331      111012222358999999999999 8899999999999999999


Q ss_pred             -cCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee
Q 046899          114 -EAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG  192 (407)
Q Consensus       114 -~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~  192 (407)
                       ..+..++.+.+|...+                          ....+......+++++.|++|++||+.+++++..+.+
T Consensus       233 ~~~~~~~~~l~gH~~~v--------------------------~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~  286 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYV--------------------------TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG  286 (456)
T ss_pred             cCCCeEEEEecCCCCce--------------------------EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence             4446777777776552                          1122333335688999999999999999999999999


Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc--ceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA--DIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      |.+.|++++|++++ ++|++++.|+.|++||+.++...+...+..+..  ++++++|+| ++.+++++..|+.+++||++
T Consensus       287 hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  287 HSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             cCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEcc
Confidence            99999999999999 899999999999999999887311234444444  599999999 99999999999999999999


Q ss_pred             CCCCCCCCCceeeecCCCCC---EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC-CCcccCCCCcCcchhc
Q 046899          271 KLTSDGVGSPIHKFEGHSAA---VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL-KYPIIHPAYSSDMLDI  346 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~~  346 (407)
                      .      +..+..+.+|...   +.+...++.+.++ .+|+.|+.|.+||+.+...++.+.+| ...+..+++++.    
T Consensus       365 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~----  433 (456)
T KOG0266|consen  365 S------GKSVGTYTGHSNLVRCIFSPTLSTGGKLI-YSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT----  433 (456)
T ss_pred             C------CcceeeecccCCcceeEecccccCCCCeE-EEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC----
Confidence            9      8889999988774   4444567788866 69999999999999999999999999 788888888776    


Q ss_pred             cccceeeeeEeeCccceeeeEE--EeeeEEEeecc
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLT--MVKVLEIWRMI  379 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~--~d~~i~iwd~~  379 (407)
                                    ...+++.+  .|+.|++|...
T Consensus       434 --------------~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  434 --------------ENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             --------------cCeeeecCcCCCceEEEecCC
Confidence                          77777776  78899999864

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=5e-30  Score=239.21  Aligned_cols=213  Identities=21%  Similarity=0.375  Sum_probs=168.5

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      +.+|.+.|++++|+|.++++|++|+.|++|++||+.+.....                                      
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------------------------------  112 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------------------------------  112 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc--------------------------------------
Confidence            458999999999999778899999999999999997542110                                      


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                                             ...+++..+.+|...|.+++|+|.+.++|++++.|++|++||+++++  ....+..|
T Consensus       113 -----------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h  167 (493)
T PTZ00421        113 -----------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCH  167 (493)
T ss_pred             -----------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCC
Confidence                                   01124566778999999999999875799999999999999999887  56777889


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC-EEEEEEcCCCCCEEEEe---eCCCeEE
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA-VLCVQWSPDKSSVFGSS---AEDGILN  314 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~ll~s~---~~d~~i~  314 (407)
                      ...|.+++|+| ++.+|++|+.|+.|++||+++      ++.+.++.+|.+. +..+.|.+++..++++|   +.|+.|+
T Consensus       168 ~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs------g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk  240 (493)
T PTZ00421        168 SDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD------GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM  240 (493)
T ss_pred             CCceEEEEEEC-CCCEEEEecCCCEEEEEECCC------CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence            99999999999 999999999999999999998      8888999988765 45778999888776444   3489999


Q ss_pred             EEeCCCCCccccc-ccCC-CcccCCCCcCcchhccccceeeeeEeeCccceeeeEE-EeeeEEEeecc
Q 046899          315 IWDHEKIGEKQDY-GELK-YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRMI  379 (407)
Q Consensus       315 vwd~~~~~~~~~~-~~~~-~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~~  379 (407)
                      +||+++....... ..+. ..+..+.|++|                  +..+++++ .|+.|++||+.
T Consensus       241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d------------------~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        241 LWDTRKMASPYSTVDLDQSSALFIPFFDED------------------TNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             EEeCCCCCCceeEeccCCCCceEEEEEcCC------------------CCEEEEEEeCCCeEEEEEee
Confidence            9999876543322 2111 12222334444                  66677666 59999999998

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.1e-30  Score=211.39  Aligned_cols=264  Identities=13%  Similarity=0.193  Sum_probs=211.2

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      -.+.|++|.|++ +|.+|++++.|-++++||..++.....+......+.    .++                      ..
T Consensus        13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~----~~~----------------------Ft   65 (311)
T KOG1446|consen   13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD----LAC----------------------FT   65 (311)
T ss_pred             CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc----EEE----------------------Ee
Confidence            478999999998 899999999999999999999988877665544321    000                      00


Q ss_pred             CCCCcccc--ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          162 GANSKNAS--KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       162 ~~~~~~~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                      .....+..  ...|.+|+..++...+.++.+.||...|+.|+.+|-+ ..|++++.|++|++||+|..+.  ...+....
T Consensus        66 h~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c--qg~l~~~~  142 (311)
T KOG1446|consen   66 HHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC--QGLLNLSG  142 (311)
T ss_pred             cCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC--ceEEecCC
Confidence            01111222  2347889999999999999999999999999999998 8999999999999999998773  33333223


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      .  ..++|+| .|-++|++.....|++||+|...    ..|..++.-   -....+.|.|+|+|++|| .+...+.+.+.
T Consensus       143 ~--pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ew~~l~FS~dGK~iL-lsT~~s~~~~l  214 (311)
T KOG1446|consen  143 R--PIAAFDP-EGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEAEWTDLEFSPDGKSIL-LSTNASFIYLL  214 (311)
T ss_pred             C--cceeECC-CCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCccceeeeEEcCCCCEEE-EEeCCCcEEEE
Confidence            3  3578999 89999999988899999999976    456666654   366899999999999987 56668899999


Q ss_pred             eCCCCCcccccccCCCcc---cCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899          317 DHEKIGEKQDYGELKYPI---IHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL  393 (407)
Q Consensus       317 d~~~~~~~~~~~~~~~~v---~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  393 (407)
                      |.-.+..+.++..+...-   .+..|+||                  +..|++|+.||+|++|++.      ++..+..+
T Consensus       215 DAf~G~~~~tfs~~~~~~~~~~~a~ftPd------------------s~Fvl~gs~dg~i~vw~~~------tg~~v~~~  270 (311)
T KOG1446|consen  215 DAFDGTVKSTFSGYPNAGNLPLSATFTPD------------------SKFVLSGSDDGTIHVWNLE------TGKKVAVL  270 (311)
T ss_pred             EccCCcEeeeEeeccCCCCcceeEEECCC------------------CcEEEEecCCCcEEEEEcC------CCcEeeEe
Confidence            999999888887655432   35667777                  8999999999999999998      89999999


Q ss_pred             hh-cccceeEeeccC
Q 046899          394 DK-FKSHIFGCDKSC  407 (407)
Q Consensus       394 ~~-h~~~v~~~~~s~  407 (407)
                      +| +...+.++.|+|
T Consensus       271 ~~~~~~~~~~~~fnP  285 (311)
T KOG1446|consen  271 RGPNGGPVSCVRFNP  285 (311)
T ss_pred             cCCCCCCccccccCC
Confidence            99 788899998876

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1e-28  Score=231.49  Aligned_cols=260  Identities=15%  Similarity=0.141  Sum_probs=181.2

Q ss_pred             cccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCC
Q 046899           49 EQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADS  128 (407)
Q Consensus        49 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~  128 (407)
                      ..|+..+.+++|-     ... .+  ......+|.+.|.+++|+|.++++||||+.||+|+|||+.+......       
T Consensus        48 ~gGG~~gvI~L~~-----~~r-~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------  112 (568)
T PTZ00420         48 EGGGLIGAIRLEN-----QMR-KP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-------  112 (568)
T ss_pred             CCCCceeEEEeee-----cCC-Cc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------
Confidence            3466677788882     111 22  23445589999999999996688999999999999999975421100       


Q ss_pred             CCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCc
Q 046899          129 HPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQ  208 (407)
Q Consensus       129 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~  208 (407)
                                                                           ....++..+.+|...|.+++|+|++..
T Consensus       113 -----------------------------------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~  139 (568)
T PTZ00420        113 -----------------------------------------------------EIKDPQCILKGHKKKISIIDWNPMNYY  139 (568)
T ss_pred             -----------------------------------------------------ccccceEEeecCCCcEEEEEECCCCCe
Confidence                                                                 001233456789999999999999856


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC
Q 046899          209 EFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS  288 (407)
Q Consensus       209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~  288 (407)
                      +|++++.|++|++||+++++  ....+ .|...|.+++|+| ++.+|++++.|+.|++||+++      ++.+.++.+|.
T Consensus       140 iLaSgS~DgtIrIWDl~tg~--~~~~i-~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs------g~~i~tl~gH~  209 (568)
T PTZ00420        140 IMCSSGFDSFVNIWDIENEK--RAFQI-NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK------QEIASSFHIHD  209 (568)
T ss_pred             EEEEEeCCCeEEEEECCCCc--EEEEE-ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC------CcEEEEEeccc
Confidence            67899999999999999887  34444 3667899999999 999999999999999999999      88899999998


Q ss_pred             CCEEEE-----EEcCCCCCEEEEeeCC----CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeC
Q 046899          289 AAVLCV-----QWSPDKSSVFGSSAED----GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI  359 (407)
Q Consensus       289 ~~v~~v-----~~~~~~~~ll~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~  359 (407)
                      +.+.+.     .|++++.+|+ |++.|    ++|+|||++..........++.....+..               +....
T Consensus       210 g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p---------------~~D~~  273 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP---------------HYDES  273 (568)
T ss_pred             CCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE---------------eeeCC
Confidence            765433     3568888775 65555    37999999964433322222221111110               00111


Q ss_pred             ccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          360 HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       360 ~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .+..+++|+.|++|++|++....    ...+..+. +..++.+++|.|
T Consensus       274 tg~l~lsGkGD~tIr~~e~~~~~----~~~l~~~~-s~~p~~g~~f~P  316 (568)
T PTZ00420        274 TGLIYLIGKGDGNCRYYQHSLGS----IRKVNEYK-SCSPFRSFGFLP  316 (568)
T ss_pred             CCCEEEEEECCCeEEEEEccCCc----EEeecccc-cCCCccceEEcc
Confidence            25578899999999999996311    11122222 445566777664

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=4.1e-31  Score=221.19  Aligned_cols=223  Identities=20%  Similarity=0.317  Sum_probs=201.4

Q ss_pred             ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 046899          147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS  226 (407)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~  226 (407)
                      .+..+.+-+..++....+..+++++.|++++|||+.+++...++.+|...|..+++++.. .++++++.|+.|+.||+..
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechh
Confidence            344455555566666667889999999999999999999999999999999999999999 6899999999999999998


Q ss_pred             CCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899          227 GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       227 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                      .+  .++.+.+|-+.|.|++.+| .-..|++|+.|..+++||+|+      ...+..+.+|..+|.++.+.|-.+.+ +|
T Consensus       225 nk--vIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRt------r~~V~~l~GH~~~V~~V~~~~~dpqv-it  294 (460)
T KOG0285|consen  225 NK--VIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRT------RASVHVLSGHTNPVASVMCQPTDPQV-IT  294 (460)
T ss_pred             hh--hHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecc------cceEEEecCCCCcceeEEeecCCCce-EE
Confidence            88  7889999999999999999 789999999999999999999      89999999999999999999988887 49


Q ss_pred             eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCCh
Q 046899          307 SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPE  386 (407)
Q Consensus       307 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~  386 (407)
                      ||.|++|++||++.++...++..|...|.+++..|+                  ...+++++.| .|+-|++.      .
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~------------------e~~fASas~d-nik~w~~p------~  349 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK------------------ENLFASASPD-NIKQWKLP------E  349 (460)
T ss_pred             ecCCceEEEeeeccCceeEeeecccceeeEEecCCc------------------hhhhhccCCc-cceeccCC------c
Confidence            999999999999999999999999998888888776                  5566777777 89999999      8


Q ss_pred             HHHHHHHhhcccceeEeec
Q 046899          387 EEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       387 ~~~~~~~~~h~~~v~~~~~  405 (407)
                      ++.++.+.||.+.|++++-
T Consensus       350 g~f~~nlsgh~~iintl~~  368 (460)
T KOG0285|consen  350 GEFLQNLSGHNAIINTLSV  368 (460)
T ss_pred             cchhhccccccceeeeeee
Confidence            9999999999999998864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=8.9e-31  Score=219.72  Aligned_cols=294  Identities=14%  Similarity=0.167  Sum_probs=242.1

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEec
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSI  141 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~  141 (407)
                      ......|++.|.+++.+| +.+++|||+.|-.-.+|++.+++....+.+|...+.+.              +|.+++|+.
T Consensus        57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            344457999999999999 89999999999999999999999888888888776544              899999999


Q ss_pred             cccccccc--cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcE
Q 046899          142 QDHVSALA--AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCL  219 (407)
Q Consensus       142 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i  219 (407)
                      .++.....  .....+..+...+....+++|+.||.+-.|.+++....+.+.+|+.++++=.|.|+| +.++++..||+|
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti  214 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTI  214 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceE
Confidence            98754333  345555556666666779999999999999999988889999999999999999999 789999999999


Q ss_pred             EEEEcCCCCCCceeee-cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec--------CCCCC
Q 046899          220 ILWDARSGSTPAVKVE-KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--------GHSAA  290 (407)
Q Consensus       220 ~iwd~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~h~~~  290 (407)
                      ++||+.++++  +..+ ..-..+..++.++. .+..+..|+.++.+++-+..+      ++.+....        .+...
T Consensus       215 ~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~s------gKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  215 IVWNPKTGQP--LHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGS------GKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             EEEecCCCce--eEEecccccCcCCcccccc-ccceeEeccCCccEEEEcccc------ceEEEecCCCCccccccchhh
Confidence            9999999983  3332 23355678888888 888999999999999988877      66666655        35555


Q ss_pred             EEEEEEcC---CCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899          291 VLCVQWSP---DKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL  367 (407)
Q Consensus       291 v~~v~~~~---~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~  367 (407)
                      +.+|.+.|   .-+ |+|+|+-||+|.|||+... .++..-.|..+|+.+.|   +               + ..+|+++
T Consensus       286 ~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~-~~R~~c~he~~V~~l~w---~---------------~-t~~l~t~  344 (399)
T KOG0296|consen  286 DESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS-TLRHICEHEDGVTKLKW---L---------------N-TDYLLTA  344 (399)
T ss_pred             hhhhhhcccccccc-hhhcccccceEEEEecccc-hhheeccCCCceEEEEE---c---------------C-cchheee
Confidence            55665554   445 6799999999999999984 45555667777777666   2               2 5789999


Q ss_pred             EEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          368 TMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       368 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      +.+|.|+.||.+      +|+++..+.||...|++++.++
T Consensus       345 c~~g~v~~wDaR------tG~l~~~y~GH~~~Il~f~ls~  378 (399)
T KOG0296|consen  345 CANGKVRQWDAR------TGQLKFTYTGHQMGILDFALSP  378 (399)
T ss_pred             ccCceEEeeecc------ccceEEEEecCchheeEEEEcC
Confidence            999999999999      9999999999999999998875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=7.9e-29  Score=248.79  Aligned_cols=293  Identities=16%  Similarity=0.167  Sum_probs=216.7

Q ss_pred             CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      .-+..++.|.|+   +++++.|+.+++|-........... ........+...|.+++|+|..+.+||+++.||+|++||
T Consensus       483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd  561 (793)
T PLN00181        483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI-HYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD  561 (793)
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc-ccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence            445667788874   7899999999999322100010110 112223345678999999987788999999999999999


Q ss_pred             CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC-CCCccccccCCCCCCCCCCCCcCceeeEe
Q 046899          113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG-ANSKNASKSGGNGDKPLESPSIGARGKYL  191 (407)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~d~~~~~~~~~~~  191 (407)
                      +.++.....+.+|...         +|.+.                 ... ....+++++.|+.+++||+.++..+..+.
T Consensus       562 ~~~~~~~~~~~~H~~~---------V~~l~-----------------~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        562 VARSQLVTEMKEHEKR---------VWSID-----------------YSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             CCCCeEEEEecCCCCC---------EEEEE-----------------EcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            9987766666555432         12111                 111 12457889999999999999988888886


Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                      .+ ..|.++.|++..+.+|++|+.||.|++||+++... ....+.+|...|.++.|.  ++.+|++++.|+.|++||++.
T Consensus       616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCC
Confidence            54 68999999654348999999999999999987653 245667899999999996  467899999999999999985


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-------------ccCCCcccCCC
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-------------GELKYPIIHPA  338 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-------------~~~~~~v~~~~  338 (407)
                      ........++.++.+|...+.+++|+|++.+ ||+|+.|+.|++|+.........+             ..+...|.+++
T Consensus       692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~-lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~  770 (793)
T PLN00181        692 SISGINETPLHSFMGHTNVKNFVGLSVSDGY-IATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC  770 (793)
T ss_pred             CccccCCcceEEEcCCCCCeeEEEEcCCCCE-EEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence            3211114678899999999999999999985 579999999999998765433221             11223355555


Q ss_pred             CcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          339 YSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       339 ~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      |+++                  +..+++++.||.|+||++
T Consensus       771 ws~~------------------~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQ------------------SSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCC------------------CCeEEEecCCCcEEEEec
Confidence            5554                  889999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.4e-30  Score=217.72  Aligned_cols=276  Identities=15%  Similarity=0.173  Sum_probs=219.5

Q ss_pred             CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC---cccccCcCCCCCCCCCcEEEEecccccc
Q 046899           70 RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN---RHAVLGAADSHPDLDQSVVLWSIQDHVS  146 (407)
Q Consensus        70 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~d~~i~~w~~~~~~~  146 (407)
                      ..|...-..+..|.++|+-+.|++ +|++|||++.|.+..+|++.....   ..++.+|                     
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh---------------------  268 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH---------------------  268 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecc---------------------
Confidence            344444445557999999999999 999999999999999999875433   2333333                     


Q ss_pred             ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899          147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR  225 (407)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  225 (407)
                           ..++.++...+.+.++++.+.+..+.+||..++.....+.. +...+.+++|.|+| ..|++|+.|+.+..||+.
T Consensus       269 -----~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  269 -----SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             -----cCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCC
Confidence                 33444555556667788888889999999999999888763 46789999999999 789999999999999998


Q ss_pred             CCCCCceeeecc-cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899          226 SGSTPAVKVEKA-HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF  304 (407)
Q Consensus       226 ~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll  304 (407)
                      ...   ....++ ....|.+++..+ ||.++++.+.|..|++|+...      ......+. -..+|+++..|.++++.|
T Consensus       343 gn~---~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~------~~dr~lis-e~~~its~~iS~d~k~~L  411 (519)
T KOG0293|consen  343 GNI---LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA------RVDRGLIS-EEQPITSFSISKDGKLAL  411 (519)
T ss_pred             cch---hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh------hhhhcccc-ccCceeEEEEcCCCcEEE
Confidence            544   222222 235689999999 999999999999999999987      34443343 457899999999999776


Q ss_pred             EEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcc-ceeeeEEEeeeEEEeecccccc
Q 046899          305 GSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG-RLLVCLTMVKVLEIWRMIDLIY  383 (407)
Q Consensus       305 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~i~iwd~~~~~~  383 (407)
                       +.-.+..|++||++....++.+.+|...-    |   +       +.  .++.|+. ..|++||.|+.|+||+..    
T Consensus       412 -vnL~~qei~LWDl~e~~lv~kY~Ghkq~~----f---i-------Ir--SCFgg~~~~fiaSGSED~kvyIWhr~----  470 (519)
T KOG0293|consen  412 -VNLQDQEIHLWDLEENKLVRKYFGHKQGH----F---I-------IR--SCFGGGNDKFIASGSEDSKVYIWHRI----  470 (519)
T ss_pred             -EEcccCeeEEeecchhhHHHHhhcccccc----e---E-------EE--eccCCCCcceEEecCCCceEEEEEcc----
Confidence             66679999999999888899999887641    1   1       11  3344555 689999999999999998    


Q ss_pred             CChHHHHHHHhhcccceeEeeccC
Q 046899          384 RPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                        .+.++..+.||...|+||+|+|
T Consensus       471 --sgkll~~LsGHs~~vNcVswNP  492 (519)
T KOG0293|consen  471 --SGKLLAVLSGHSKTVNCVSWNP  492 (519)
T ss_pred             --CCceeEeecCCcceeeEEecCC
Confidence              8999999999999999999987

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=9.5e-30  Score=214.55  Aligned_cols=277  Identities=18%  Similarity=0.296  Sum_probs=220.4

Q ss_pred             CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           70 RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        70 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      ..+..+....+.|.+-|.++...   ++.++||++||.+++||.. ++....+.+|...+...     .|-..+      
T Consensus        92 ~~~aP~pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v-----~~v~~n------  156 (423)
T KOG0313|consen   92 AITAPKPLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSV-----AWVIKN------  156 (423)
T ss_pred             ecCCCCccccccchhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeee-----EEEecC------
Confidence            34444556666799999999854   5789999999999999987 45666777776653221     221111      


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc----eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA----RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR  225 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  225 (407)
                                  .....+++++.|.++++|..+.++.    +...++|...|.++...+++ ..|++|+.|..|.+|+..
T Consensus       157 ------------~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~  223 (423)
T KOG0313|consen  157 ------------SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVE  223 (423)
T ss_pred             ------------CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccC
Confidence                        1112467788888888887765543    33445999999999999999 899999999999999932


Q ss_pred             CC-----------------------CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899          226 SG-----------------------STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH  282 (407)
Q Consensus       226 ~~-----------------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  282 (407)
                      +.                       ...+...+.+|.++|.++.|++  ...+++++.|.+|+.||+.+      +....
T Consensus       224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDlet------g~~~~  295 (423)
T KOG0313|consen  224 TDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLET------GGLKS  295 (423)
T ss_pred             CCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeec------cccee
Confidence            11                       1124667789999999999986  67899999999999999999      88888


Q ss_pred             eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeC
Q 046899          283 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI  359 (407)
Q Consensus       283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~  359 (407)
                      ++.+ ..+++++..+|... ||++|+.|..|++||.+++.-   .+++.+|...|.++.++|.                 
T Consensus       296 ~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-----------------  356 (423)
T KOG0313|consen  296 TLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-----------------  356 (423)
T ss_pred             eeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-----------------
Confidence            8875 56899999999877 668999999999999997633   3678899999999999987                 


Q ss_pred             ccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899          360 HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       360 ~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                      +...+++|+.|+++++||++.     ...++..+.+|.+.|.+++|+
T Consensus       357 ~~~~~~S~S~D~t~klWDvRS-----~k~plydI~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  357 NEFQLVSGSYDNTVKLWDVRS-----TKAPLYDIAGHNDKVLSVDWN  398 (423)
T ss_pred             CceEEEEEecCCeEEEEEecc-----CCCcceeeccCCceEEEEecc
Confidence            266788999999999999983     455999999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.2e-28  Score=199.31  Aligned_cols=276  Identities=14%  Similarity=0.204  Sum_probs=215.0

Q ss_pred             CeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeE--EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899           38 PSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKF--KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW  111 (407)
Q Consensus        38 p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  111 (407)
                      ..-++.|.|.    +++.+.|+.+|+|-..   .   .....+.  -.-+|+..|++++|+| .|++||+|+.|.++.||
T Consensus        16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~---~---~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw   88 (312)
T KOG0645|consen   16 RVWSVAWHPGKGVILASCGTDKAVRIWSTS---S---GDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVIW   88 (312)
T ss_pred             cEEEEEeccCCceEEEeecCCceEEEEecC---C---CCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEEe
Confidence            3446788885    8899999999999322   1   1112222  2226999999999999 88999999999999999


Q ss_pred             eCcCC--CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC---CcCc
Q 046899          112 DVEAQ--PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP---SIGA  186 (407)
Q Consensus       112 d~~~~--~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~---~~~~  186 (407)
                      .-..+  +++..+.+|...                          ++..+.......+++.+.|.++-||...   ..++
T Consensus        89 ~k~~~efecv~~lEGHEnE--------------------------VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec  142 (312)
T KOG0645|consen   89 KKEDGEFECVATLEGHENE--------------------------VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC  142 (312)
T ss_pred             ecCCCceeEEeeeeccccc--------------------------eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence            87654  345555555443                          3333334444568888899999888776   3456


Q ss_pred             eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC-CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR-SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       187 ~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      ...+++|+..|..+.|+|.. .+|++++.|++|++|+-. .....+..++.+|...|.+++|+| .|..|++++.|++++
T Consensus       143 ~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~  220 (312)
T KOG0645|consen  143 IAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVS  220 (312)
T ss_pred             EeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceE
Confidence            77889999999999999998 799999999999999887 555557889999999999999999 889999999999999


Q ss_pred             EEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC------Cccc-ccccCCCcccCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI------GEKQ-DYGELKYPIIHP  337 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~------~~~~-~~~~~~~~v~~~  337 (407)
                      ||-...           .+. .|+.++..++|. ++  +|||++.|+.|+++.-...      +.+. .-..|...|+++
T Consensus       221 Iw~~~~-----------~~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV  286 (312)
T KOG0645|consen  221 IWRLYT-----------DLSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV  286 (312)
T ss_pred             eeeecc-----------CcchhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence            998664           122 377899999998 55  5799999999999976642      1111 223577788999


Q ss_pred             CCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          338 AYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       338 ~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .|+|..                 .+.|++++.||.|++|.+.
T Consensus       287 ~w~p~~-----------------~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  287 QWNPKV-----------------SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEcCCC-----------------CCceeecCCCceEEEEEec
Confidence            998852                 7899999999999999874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-29  Score=202.64  Aligned_cols=279  Identities=16%  Similarity=0.181  Sum_probs=223.6

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      +.+.||+.+++.|.|+. +|++|.+++.|.+..||--..++.+.++.+|...         +|-+.              
T Consensus         4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGa---------vW~~D--------------   59 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGA---------VWCCD--------------   59 (327)
T ss_pred             cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCce---------EEEEE--------------
Confidence            45568999999999998 9999999999999999999889999999888654         45433              


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCCCC---
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-----DSCLILWDARSGS---  228 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~---  228 (407)
                         .......+++|+.|.++++||.++++.+..++ -..+|..+.|++.| ++++.+..     .+.|.++|++...   
T Consensus        60 ---id~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~  134 (327)
T KOG0643|consen   60 ---IDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI  134 (327)
T ss_pred             ---ecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh
Confidence               22334568899999999999999999999886 56789999999999 66555543     4779999998432   


Q ss_pred             --CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-CceeeecCCCCCEEEEEEcCCCCCEEE
Q 046899          229 --TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG-SPIHKFEGHSAAVLCVQWSPDKSSVFG  305 (407)
Q Consensus       229 --~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~ll~  305 (407)
                        ..+...+..+.+.++.+-|.| -+.+|++|..||.|..||+++      + +.+...+.|...|++++++++..+. +
T Consensus       135 ~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~------g~~~v~s~~~h~~~Ind~q~s~d~T~F-i  206 (327)
T KOG0643|consen  135 DSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDART------GKELVDSDEEHSSKINDLQFSRDRTYF-I  206 (327)
T ss_pred             cccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEccc------CceeeechhhhccccccccccCCcceE-E
Confidence              113556667789999999999 899999999999999999998      5 5556667899999999999999965 6


Q ss_pred             EeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE--ee--eEEEeecccc
Q 046899          306 SSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM--VK--VLEIWRMIDL  381 (407)
Q Consensus       306 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~--d~--~i~iwd~~~~  381 (407)
                      |++.|.+-++||+++.+.+.++.. ..||.+.+++|.        ...+..-.|...+=++...  .|  --|+|++.  
T Consensus       207 T~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~--------~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i--  275 (327)
T KOG0643|consen  207 TGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPL--------LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI--  275 (327)
T ss_pred             ecccCccceeeeccceeeEEEeee-cccccceecccc--------cceEEecCCceeeeeeeecccccchhhhHHHHH--
Confidence            999999999999999888877754 678999999996        2222233333322222211  11  56788887  


Q ss_pred             ccCChHHHHHHHhhcccceeEeeccC
Q 046899          382 IYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       382 ~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                          ..|.+..++||.++|++|||+|
T Consensus       276 ----~eEEigrvkGHFGPINsvAfhP  297 (327)
T KOG0643|consen  276 ----FEEEIGRVKGHFGPINSVAFHP  297 (327)
T ss_pred             ----HHHHhccccccccCcceeEECC
Confidence                8999999999999999999987

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.3e-30  Score=224.95  Aligned_cols=264  Identities=17%  Similarity=0.248  Sum_probs=211.1

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      ..+.|.+++|+|..+.-+|+.+. -.+.||+..+......+......       +.-                ..|-.+|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~-------v~s----------------~~fR~DG   80 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDV-------VYS----------------VDFRSDG   80 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccc-------eeE----------------EEeecCC
Confidence            45689999999977766776665 48999999887655544322211       111                1122233


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD  241 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  241 (407)
                      .   .+++|...|.++++|+++...++.+.+|+.+|..+.|+|++...|++|+.|+.+++||+.+..  ....+.+|...
T Consensus        81 ~---LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v~~~l~~htDY  155 (487)
T KOG0310|consen   81 R---LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--VQAELSGHTDY  155 (487)
T ss_pred             e---EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--EEEEecCCcce
Confidence            3   478899999999999888788899999999999999999998899999999999999999887  46688899999


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      |.|.+|+|.++.+++||++||.|++||+|..     ...+.++. |..+|..+.+-|.|. ++|+++ .+.|+|||+.++
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-----~~~v~eln-hg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G  227 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSL-----TSRVVELN-HGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTG  227 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccC-----CceeEEec-CCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCC
Confidence            9999999988889999999999999999983     26677776 899999999999998 456777 578999999976


Q ss_pred             Cccc-ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccce
Q 046899          322 GEKQ-DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHI  400 (407)
Q Consensus       322 ~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  400 (407)
                      .++. .+..|...||++.+..+                  +..+++++.|+.|+|||+.      +.+.+..+. ..++|
T Consensus       228 ~qll~~~~~H~KtVTcL~l~s~------------------~~rLlS~sLD~~VKVfd~t------~~Kvv~s~~-~~~pv  282 (487)
T KOG0310|consen  228 GQLLTSMFNHNKTVTCLRLASD------------------STRLLSGSLDRHVKVFDTT------NYKVVHSWK-YPGPV  282 (487)
T ss_pred             ceehhhhhcccceEEEEEeecC------------------CceEeecccccceEEEEcc------ceEEEEeee-cccce
Confidence            6654 44559999999988776                  7899999999999999986      444444443 56678


Q ss_pred             eEeeccC
Q 046899          401 FGCDKSC  407 (407)
Q Consensus       401 ~~~~~s~  407 (407)
                      .+++.|+
T Consensus       283 Lsiavs~  289 (487)
T KOG0310|consen  283 LSIAVSP  289 (487)
T ss_pred             eeEEecC
Confidence            8777664

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.2e-29  Score=230.31  Aligned_cols=268  Identities=16%  Similarity=0.247  Sum_probs=188.7

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccc--ccccccCCCCCccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDH--VSALAAEPGSAKST  158 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~  158 (407)
                      +|.+.|+++.|++ +|+|||+||.|+.|+||.+...+....-.+....+        ...+...  ..........    
T Consensus       265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~--------~~~~~~~s~~~p~~s~~~~----  331 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCM--------YFEYNANSQIEPSTSSEEK----  331 (712)
T ss_pred             ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchh--------hhhhhhccccCcccccccc----
Confidence            6999999999999 99999999999999999998744321111100000        0000000  0000000000    


Q ss_pred             ccCCCCCccccccCCCCCCCCCC----CCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          159 ASGGANSKNASKSGGNGDKPLES----PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                      ..+.. ...-.+..... .+.+.    -..+++..+.+|.+.|..|.|+.++  +|++++.|.+|+||++....  ++..
T Consensus       332 ~~~~~-s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~  405 (712)
T KOG0283|consen  332 ISSRT-SSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKV  405 (712)
T ss_pred             ccccc-cccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeE
Confidence            00000 00000001111 11111    1235778899999999999999876  89999999999999999777  6766


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      + .|...|+||+|+|.|.++|++|+-||.||||++..       ..+..+..-..-|++++|.|+|++. +.|+.+|.++
T Consensus       406 F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~PdGk~a-vIGt~~G~C~  476 (712)
T KOG0283|consen  406 F-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPDGKGA-VIGTFNGYCR  476 (712)
T ss_pred             E-ecCCeeEEEEecccCCCcEeecccccceEEeecCc-------CeeEeehhhhhhheeEEeccCCceE-EEEEeccEEE
Confidence            5 79999999999999999999999999999999986       4444444445889999999999987 4999999999


Q ss_pred             EEeCCCCCcccccccC--------CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCCh
Q 046899          315 IWDHEKIGEKQDYGEL--------KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPE  386 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~--------~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~  386 (407)
                      +|++...+..+.+..+        ...|+++.|.|                 +..+.|+..+.|+.|||+|..      +
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p-----------------~~~~~vLVTSnDSrIRI~d~~------~  533 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFP-----------------GDPDEVLVTSNDSRIRIYDGR------D  533 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecC-----------------CCCCeEEEecCCCceEEEecc------c
Confidence            9999987766654422        12466655543                 335679999999999999998      7


Q ss_pred             HHHHHHHhhcccc
Q 046899          387 EEVLAELDKFKSH  399 (407)
Q Consensus       387 ~~~~~~~~~h~~~  399 (407)
                      .+++..|+|+.+.
T Consensus       534 ~~lv~KfKG~~n~  546 (712)
T KOG0283|consen  534 KDLVHKFKGFRNT  546 (712)
T ss_pred             hhhhhhhcccccC
Confidence            8999999987654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=3.3e-29  Score=234.00  Aligned_cols=254  Identities=17%  Similarity=0.306  Sum_probs=218.9

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      |...+.+..|.   ...+++++.|++|++||...+..... +.+|...         +|-+.                 .
T Consensus       207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~---------V~~l~-----------------~  257 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGG---------VWGLA-----------------F  257 (537)
T ss_pred             Ccchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCC---------ceeEE-----------------E
Confidence            56778888876   35799999999999999998887766 7777665         23222                 1


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                      ..-...+++|+.|.++++||..++++...+.+|...|.++...+   .++++|+.|.+|++|++.++.  .+..+.+|.+
T Consensus       258 ~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~--~l~l~~~h~~  332 (537)
T KOG0274|consen  258 PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGA--CLNLLRGHTG  332 (537)
T ss_pred             ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcc--eEEEeccccc
Confidence            11234578899999999999999999999999999999999875   578899999999999999988  7888888999


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +|+++..+   +.++++|+.||+|++||+++      ++++.++.+|...|.++.+.+. .++ .+|+.|++|++||+++
T Consensus       333 ~V~~v~~~---~~~lvsgs~d~~v~VW~~~~------~~cl~sl~gH~~~V~sl~~~~~-~~~-~Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  333 PVNCVQLD---EPLLVSGSYDGTVKVWDPRT------GKCLKSLSGHTGRVYSLIVDSE-NRL-LSGSLDTTIKVWDLRT  401 (537)
T ss_pred             cEEEEEec---CCEEEEEecCceEEEEEhhh------ceeeeeecCCcceEEEEEecCc-ceE-EeeeeccceEeecCCc
Confidence            99999995   68999999999999999998      9999999999999999998775 445 5999999999999999


Q ss_pred             C-CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhh-ccc
Q 046899          321 I-GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK-FKS  398 (407)
Q Consensus       321 ~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-h~~  398 (407)
                      . +++.++.+|..-+..+.+.                    ...+++++.|++|++||..      +++++..+.+ |..
T Consensus       402 ~~~c~~tl~~h~~~v~~l~~~--------------------~~~Lvs~~aD~~Ik~WD~~------~~~~~~~~~~~~~~  455 (537)
T KOG0274|consen  402 KRKCIHTLQGHTSLVSSLLLR--------------------DNFLVSSSADGTIKLWDAE------EGECLRTLEGRHVG  455 (537)
T ss_pred             hhhhhhhhcCCcccccccccc--------------------cceeEeccccccEEEeecc------cCceeeeeccCCcc
Confidence            9 8999999998877665541                    6679999999999999999      8999999999 789


Q ss_pred             ceeEeecc
Q 046899          399 HIFGCDKS  406 (407)
Q Consensus       399 ~v~~~~~s  406 (407)
                      .|.++++.
T Consensus       456 ~v~~l~~~  463 (537)
T KOG0274|consen  456 GVSALALG  463 (537)
T ss_pred             cEEEeecC
Confidence            99988874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.2e-29  Score=231.82  Aligned_cols=252  Identities=17%  Similarity=0.224  Sum_probs=204.4

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD  127 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~  127 (407)
                      +.++-.++.+++|   +|....     ..-+..+|.|+|+.+.|+| .+.++++|++|-.|+||+..+.+++.++.+|.+
T Consensus        24 ILtslHsG~IQlW---DYRM~t-----li~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlD   94 (1202)
T KOG0292|consen   24 ILTSLHSGVIQLW---DYRMGT-----LIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD   94 (1202)
T ss_pred             EEEeecCceeeee---hhhhhh-----HHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccc
Confidence            6677778889999   454332     1234447999999999999 778999999999999999999999999999866


Q ss_pred             CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC
Q 046899          128 SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA  207 (407)
Q Consensus       128 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~  207 (407)
                      .+       +.-         .+          ..--..+++++.|.+|+||+.++++++..+.+|...|.|.+|+|.. 
T Consensus        95 YV-------Rt~---------~F----------HheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-  147 (1202)
T KOG0292|consen   95 YV-------RTV---------FF----------HHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-  147 (1202)
T ss_pred             ee-------EEe---------ec----------cCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-
Confidence            52       211         11          1122458889999999999999999999999999999999999987 


Q ss_pred             cEEEEEeCCCcEEEEEcCCCCC---------------------------CceeeecccCcceEEEEecCCCCCEEEEEeC
Q 046899          208 QEFCSVGDDSCLILWDARSGST---------------------------PAVKVEKAHNADIHCVDWNPHDVNLILTGSA  260 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~  260 (407)
                      .+++|+|.|.+|++||+.-.++                           .....+.+|...|+-++|+| .-.++++|++
T Consensus       148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~D  226 (1202)
T KOG0292|consen  148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGAD  226 (1202)
T ss_pred             ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCC
Confidence            7999999999999999863210                           01234678999999999999 8889999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCc
Q 046899          261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYS  340 (407)
Q Consensus       261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  340 (407)
                      |..|++|.+...+    .-.+.+.++|...|.++-|+|....+ .|.|.|++|+|||+.+.+.++++......-+.++-.
T Consensus       227 DRqVKlWrmnetK----aWEvDtcrgH~nnVssvlfhp~q~lI-lSnsEDksirVwDm~kRt~v~tfrrendRFW~laah  301 (1202)
T KOG0292|consen  227 DRQVKLWRMNETK----AWEVDTCRGHYNNVSSVLFHPHQDLI-LSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAH  301 (1202)
T ss_pred             cceeeEEEecccc----ceeehhhhcccCCcceEEecCcccee-EecCCCccEEEEecccccceeeeeccCCeEEEEEec
Confidence            9999999998744    34567788999999999999998855 599999999999999999998886544443334433


Q ss_pred             C
Q 046899          341 S  341 (407)
Q Consensus       341 ~  341 (407)
                      |
T Consensus       302 P  302 (1202)
T KOG0292|consen  302 P  302 (1202)
T ss_pred             C
Confidence            3

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-29  Score=232.87  Aligned_cols=257  Identities=18%  Similarity=0.247  Sum_probs=213.7

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      ....|-.++|+| ..-+++++-..|.|++||.+-+.++..+..|..++       +=                +.|.+. 
T Consensus         8 kSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpV-------Rg----------------v~FH~~-   62 (1202)
T KOG0292|consen    8 KSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPV-------RG----------------VDFHPT-   62 (1202)
T ss_pred             ccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCcc-------ce----------------eeecCC-
Confidence            456889999999 66689999999999999999998888888885543       21                122222 


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD  241 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  241 (407)
                        ...+++|+.|..|++|+..+.+++.++.+|-+.|..+.|++.- ..++|+|.|.+|+||+..+++  ++..+.+|.-.
T Consensus        63 --qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~--~iavltGHnHY  137 (1202)
T KOG0292|consen   63 --QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRK--CIAVLTGHNHY  137 (1202)
T ss_pred             --CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCc--eEEEEecCceE
Confidence              3458889999999999999999999999999999999999998 589999999999999999999  89999999999


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC-----------------------CCceeeecCCCCCEEEEEEcC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV-----------------------GSPIHKFEGHSAAVLCVQWSP  298 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-----------------------~~~~~~~~~h~~~v~~v~~~~  298 (407)
                      |.|..|+| ...++++++.|.+|||||+........                       .-..+.+.+|...|+-++|+|
T Consensus       138 VMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  138 VMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             EEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence            99999999 889999999999999999864332000                       112246678999999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCCCCCcc--cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          299 DKSSVFGSSAEDGILNIWDHEKIGEK--QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       299 ~~~~ll~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                      .-+ ||+||++|..|++|.++..+.-  .+..+|.++|+++-|.|.                  .+.|++.+.|++||||
T Consensus       217 Tlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~------------------q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  217 TLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH------------------QDLILSNSEDKSIRVW  277 (1202)
T ss_pred             Ccc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc------------------cceeEecCCCccEEEE
Confidence            999 6689999999999998865543  456688888888777554                  7889999999999999


Q ss_pred             eccccccCChHHHHHHHh
Q 046899          377 RMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       377 d~~~~~~~~~~~~~~~~~  394 (407)
                      |+.      ....++.++
T Consensus       278 Dm~------kRt~v~tfr  289 (1202)
T KOG0292|consen  278 DMT------KRTSVQTFR  289 (1202)
T ss_pred             ecc------cccceeeee
Confidence            998      555666654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=4e-29  Score=199.77  Aligned_cols=268  Identities=15%  Similarity=0.224  Sum_probs=227.3

Q ss_pred             eEEEeeCCCceEEEEEeC--CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899           76 KFKTIIHPGEVNRIRELP--QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG  153 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~--~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~  153 (407)
                      ++...+|..+|..++|+|  ++|.+|++++.||.=.+-+-+++.-+.++.+|...         +|...           
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga---------vw~~~-----------   66 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA---------VWSAT-----------   66 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc---------eeeee-----------
Confidence            345568999999999997  58899999999999999999999888888888664         56432           


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899          154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK  233 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  233 (407)
                            ........++++.|-+.++||.-++..+..+. |...|.+++|+.+. ++|++|+.+..+++||++..+.| ..
T Consensus        67 ------l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~Ap-p~  137 (334)
T KOG0278|consen   67 ------LNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAP-PK  137 (334)
T ss_pred             ------cCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCC-ch
Confidence                  11222335667788899999999999999884 88999999999998 88999999999999999988764 56


Q ss_pred             eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      .+.+|.+.|..+.|.. ..+.|++..+|+.||+||.++      +..+.++. ...+|+++..+++|+ ++ +-...+.|
T Consensus       138 E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rT------gt~v~sL~-~~s~VtSlEvs~dG~-il-Tia~gssV  207 (334)
T KOG0278|consen  138 EISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRT------GTEVQSLE-FNSPVTSLEVSQDGR-IL-TIAYGSSV  207 (334)
T ss_pred             hhcCCCCcceeEEEec-cCceEEeeccCCceEEEEecc------CcEEEEEe-cCCCCcceeeccCCC-EE-EEecCcee
Confidence            7789999999999998 778888889999999999999      89999987 467899999999999 43 66778899


Q ss_pred             EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899          314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL  393 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  393 (407)
                      .+||..+.+.+..+.. ...|.+.+.+|+                  ...+++|..|..++.||..      +++.+..+
T Consensus       208 ~Fwdaksf~~lKs~k~-P~nV~SASL~P~------------------k~~fVaGged~~~~kfDy~------TgeEi~~~  262 (334)
T KOG0278|consen  208 KFWDAKSFGLLKSYKM-PCNVESASLHPK------------------KEFFVAGGEDFKVYKFDYN------TGEEIGSY  262 (334)
T ss_pred             EEeccccccceeeccC-ccccccccccCC------------------CceEEecCcceEEEEEecc------CCceeeec
Confidence            9999999988877653 334666666666                  6788999999999999999      88888886


Q ss_pred             -hhcccceeEeeccC
Q 046899          394 -DKFKSHIFGCDKSC  407 (407)
Q Consensus       394 -~~h~~~v~~~~~s~  407 (407)
                       .||.++|.||.|||
T Consensus       263 nkgh~gpVhcVrFSP  277 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSP  277 (334)
T ss_pred             ccCCCCceEEEEECC
Confidence             99999999999997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.5e-29  Score=196.22  Aligned_cols=215  Identities=19%  Similarity=0.297  Sum_probs=191.1

Q ss_pred             CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899          154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK  233 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  233 (407)
                      .+.....+....+.++.++|.++++|+...+.+++++.+|..+|..++.+.+. ..|++|+.|..+.+||+.+++  ..+
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGk--v~R   95 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGK--VDR   95 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCe--eee
Confidence            33444455556778999999999999999999999999999999999999888 789999999999999999999  789


Q ss_pred             eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      .+.+|.+.|+.+.|+. +...+++|+.|.++++||.|...    .+|++.+......|.++.....   .+++|+.||++
T Consensus        96 r~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~h---eIvaGS~DGtv  167 (307)
T KOG0316|consen   96 RFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTV  167 (307)
T ss_pred             ecccccceeeEEEecC-cceEEEeccccceeEEEEcccCC----CCccchhhhhcCceeEEEeccc---EEEeeccCCcE
Confidence            9999999999999999 88999999999999999999866    7899999988899999998643   35699999999


Q ss_pred             EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899          314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL  393 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  393 (407)
                      |.||++.++....+  ...||+++.||+|                  ++-.+++++|++||+-|-.      +|++++++
T Consensus       168 RtydiR~G~l~sDy--~g~pit~vs~s~d------------------~nc~La~~l~stlrLlDk~------tGklL~sY  221 (307)
T KOG0316|consen  168 RTYDIRKGTLSSDY--FGHPITSVSFSKD------------------GNCSLASSLDSTLRLLDKE------TGKLLKSY  221 (307)
T ss_pred             EEEEeecceeehhh--cCCcceeEEecCC------------------CCEEEEeeccceeeecccc------hhHHHHHh
Confidence            99999998765544  4678999999999                  8889999999999999998      99999999


Q ss_pred             hhcccceeEeec
Q 046899          394 DKFKSHIFGCDK  405 (407)
Q Consensus       394 ~~h~~~v~~~~~  405 (407)
                      .||++.-+.++.
T Consensus       222 kGhkn~eykldc  233 (307)
T KOG0316|consen  222 KGHKNMEYKLDC  233 (307)
T ss_pred             cccccceeeeee
Confidence            999987665543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=4.7e-28  Score=203.43  Aligned_cols=291  Identities=14%  Similarity=0.158  Sum_probs=224.7

Q ss_pred             ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc
Q 046899           46 PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA  125 (407)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  125 (407)
                      +..+||+.|...-+|-..      ..+  ....+.+|++.|+++.|+. ++.+||||+.+|.|+||+..++.....+...
T Consensus        77 ~l~aTGGgDD~AflW~~~------~ge--~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e  147 (399)
T KOG0296|consen   77 NLVATGGGDDLAFLWDIS------TGE--FAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQE  147 (399)
T ss_pred             ceEEecCCCceEEEEEcc------CCc--ceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecc
Confidence            347899999999999221      222  4556669999999999998 9999999999999999999998766555311


Q ss_pred             CC------CCC--------CCCCcEEEEecccc--ccccccCCCC---CcccccCCCCCccccccCCCCCCCCCCCCcCc
Q 046899          126 AD------SHP--------DLDQSVVLWSIQDH--VSALAAEPGS---AKSTASGGANSKNASKSGGNGDKPLESPSIGA  186 (407)
Q Consensus       126 ~~------~~~--------~~d~~i~~w~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~  186 (407)
                      ..      ..|        +.||.+.+|.+.+.  .+.+..+...   ..+++.|   ..++++..||++++|+..++++
T Consensus       148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG---Kr~~tgy~dgti~~Wn~ktg~p  224 (399)
T KOG0296|consen  148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG---KRILTGYDDGTIIVWNPKTGQP  224 (399)
T ss_pred             cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC---ceEEEEecCceEEEEecCCCce
Confidence            10      111        11999999999884  2233333332   3455554   4588999999999999999999


Q ss_pred             eeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--------ccCcceEEE---EecCCCCCE
Q 046899          187 RGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--------AHNADIHCV---DWNPHDVNL  254 (407)
Q Consensus       187 ~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~v~~l---~~~~~~~~~  254 (407)
                      +..+.+ ......++.++..+ ..++.|+.++.+++-+..+++  .+....        .+...+.|+   .|+. .-.+
T Consensus       225 ~~~~~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgK--Vv~~~n~~~~~l~~~~e~~~esve~~~~ss-~lpL  300 (399)
T KOG0296|consen  225 LHKITQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGK--VVNCNNGTVPELKPSQEELDESVESIPSSS-KLPL  300 (399)
T ss_pred             eEEecccccCcCCcccccccc-ceeEeccCCccEEEEccccce--EEEecCCCCccccccchhhhhhhhhccccc-ccch
Confidence            888763 23467788888888 789999999999888877765  222221        333344444   4444 5568


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcc
Q 046899          255 ILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPI  334 (407)
Q Consensus       255 l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  334 (407)
                      +|+|+-||+|.|||+..      .++ +..-.|..+|..+.|-+ ..+|+ +++.||.|+.||.++++.+.++.+|..+|
T Consensus       301 ~A~G~vdG~i~iyD~a~------~~~-R~~c~he~~V~~l~w~~-t~~l~-t~c~~g~v~~wDaRtG~l~~~y~GH~~~I  371 (399)
T KOG0296|consen  301 AACGSVDGTIAIYDLAA------STL-RHICEHEDGVTKLKWLN-TDYLL-TACANGKVRQWDARTGQLKFTYTGHQMGI  371 (399)
T ss_pred             hhcccccceEEEEeccc------chh-heeccCCCceEEEEEcC-cchhe-eeccCceEEeeeccccceEEEEecCchhe
Confidence            89999999999999998      444 44445899999999998 67775 88899999999999999999999999999


Q ss_pred             cCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          335 IHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       335 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .+++.+|+                  .+.|+++|.|++.+|+++.
T Consensus       372 l~f~ls~~------------------~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  372 LDFALSPQ------------------KRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEcCC------------------CcEEEEecCCCeEEEEecC
Confidence            99888887                  8999999999999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2e-28  Score=202.26  Aligned_cols=284  Identities=18%  Similarity=0.268  Sum_probs=206.5

Q ss_pred             eecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccc--
Q 046899           45 GPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAV--  122 (407)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~--  122 (407)
                      -|.+.+++.|.+.+||-.     +..   .-..+..||.+.|++|+|++ .+.+++|++.|++-.||...-.-.....  
T Consensus       160 qpi~gtASADhTA~iWs~-----Esg---~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a  230 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSL-----ESG---ACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNA  230 (481)
T ss_pred             CcceeecccccceeEEee-----ccc---cceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCC
Confidence            467889999999999921     111   11334558999999999999 8899999999999999984322111110  


Q ss_pred             -cCcCCC--CCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEE
Q 046899          123 -LGAADS--HPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED  199 (407)
Q Consensus       123 -~~~~~~--~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~  199 (407)
                       .+|...  ..+.|.....  ..                  +.      ..+...+|       ..++..+.+|...|.+
T Consensus       231 ~~~hSsEeE~e~sDe~~~d--~d------------------~~------~~sD~~ti-------RvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  231 PSDHSSEEEEEHSDEHNRD--TD------------------SS------EKSDGHTI-------RVPLMRLTGHRAVVSA  277 (481)
T ss_pred             CCCCCchhhhhcccccccc--cc------------------cc------cccCCcee-------eeeeeeeeccccceEe
Confidence             011100  0000000000  00                  00      00000111       2367788899999999


Q ss_pred             EEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 046899          200 VQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGS  279 (407)
Q Consensus       200 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~  279 (407)
                      ..|...| ..+++++.|.+..+||++++.  .+..+.+|....+.++-+| ..+++++.+.|.+.++||.+..     -.
T Consensus       278 ~dWL~gg-~Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-----I~  348 (481)
T KOG0300|consen  278 CDWLAGG-QQMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-----IQ  348 (481)
T ss_pred             hhhhcCc-ceeeeeeccccceeeeeccCc--eeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh-----cc
Confidence            9999888 889999999999999999999  7889999999999999999 8999999999999999999953     46


Q ss_pred             ceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeC
Q 046899          280 PIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI  359 (407)
Q Consensus       280 ~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~  359 (407)
                      .+..|++|...|+++.|..+.+ + ++|+.|.+|++||+++++....--..+.++..++.|.-                 
T Consensus       349 sV~VFQGHtdtVTS~vF~~dd~-v-VSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g-----------------  409 (481)
T KOG0300|consen  349 SVAVFQGHTDTVTSVVFNTDDR-V-VSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKG-----------------  409 (481)
T ss_pred             eeeeecccccceeEEEEecCCc-e-eecCCCceEEEeeeccccCcceeeecCCccceeEeecC-----------------
Confidence            7889999999999999998877 5 69999999999999988766544445666666555321                 


Q ss_pred             ccceeeeEEEeeeEEEeeccccccCChHHHHHHH-----hhcccceeEeecc
Q 046899          360 HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL-----DKFKSHIFGCDKS  406 (407)
Q Consensus       360 ~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s  406 (407)
                       ...|+.--....||+||++       |..+..+     +||...|+|+||+
T Consensus       410 -~~iIAiPhDNRqvRlfDln-------G~RlaRlPrtsRqgHrRMV~c~AW~  453 (481)
T KOG0300|consen  410 -HPIIAIPHDNRQVRLFDLN-------GNRLARLPRTSRQGHRRMVTCCAWL  453 (481)
T ss_pred             -CceEEeccCCceEEEEecC-------CCccccCCcccccccceeeeeeecc
Confidence             2233333344499999997       5555544     4999999999996

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=8.6e-30  Score=216.98  Aligned_cols=274  Identities=19%  Similarity=0.234  Sum_probs=219.0

Q ss_pred             ccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccc
Q 046899           68 EARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHV  145 (407)
Q Consensus        68 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~  145 (407)
                      +...|......+-.|.++|+.+.|.+ +...|+||+.|..|++|++...+  ...++.+..                   
T Consensus       160 ~~~lpS~~~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-------------------  219 (459)
T KOG0288|consen  160 EDTLPSRALFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL-------------------  219 (459)
T ss_pred             hcccchhhhhhhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccC-------------------
Confidence            33556666667778999999999999 77789999999999999998765  223332221                   


Q ss_pred             cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899          146 SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR  225 (407)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  225 (407)
                             +.+..+.........++.+.|+.+++|+....+...++.+|++.|+++.|.... ..+++|+.|.+|++||+.
T Consensus       220 -------g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~  291 (459)
T KOG0288|consen  220 -------GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQ  291 (459)
T ss_pred             -------CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhh
Confidence                   112222233334567889999999999999999999999999999999998876 559999999999999999


Q ss_pred             CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEE
Q 046899          226 SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG  305 (407)
Q Consensus       226 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~  305 (407)
                      ...  +.++.. -.+.+..|..+   ...+++|..|+.|++||.+.      ..+..+...+. .|+++..++++..|+ 
T Consensus       292 k~~--C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs------~~~~~sv~~gg-~vtSl~ls~~g~~lL-  357 (459)
T KOG0288|consen  292 KAY--CSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS------ADKTRSVPLGG-RVTSLDLSMDGLELL-  357 (459)
T ss_pred             hhh--eecccc-ccccccceEec---ceeeeecccccceEEEeccC------CceeeEeecCc-ceeeEeeccCCeEEe-
Confidence            876  555432 34455666665   36789999999999999999      78888888765 899999999999887 


Q ss_pred             EeeCCCeEEEEeCCCCCcccccccC----CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899          306 SSAEDGILNIWDHEKIGEKQDYGEL----KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL  381 (407)
Q Consensus       306 s~~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~  381 (407)
                      +++.|.++.+.|+++.+..+.+...    ....+.+.|||+                  +.++++||.||.|+||++.  
T Consensus       358 sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd------------------~~YvaAGS~dgsv~iW~v~--  417 (459)
T KOG0288|consen  358 SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD------------------GSYVAAGSADGSVYIWSVF--  417 (459)
T ss_pred             eecCCCceeeeecccccEEEEeeccccccccccceeEECCC------------------CceeeeccCCCcEEEEEcc--
Confidence            7799999999999998777776543    233677888888                  9999999999999999999  


Q ss_pred             ccCChHHHHHHHhhcc-c-ceeEeeccC
Q 046899          382 IYRPEEEVLAELDKFK-S-HIFGCDKSC  407 (407)
Q Consensus       382 ~~~~~~~~~~~~~~h~-~-~v~~~~~s~  407 (407)
                          ++++...+.... + .|++++|++
T Consensus       418 ----tgKlE~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  418 ----TGKLEKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             ----CceEEEEeccCCCCcceEEEEEcC
Confidence                788877777543 3 699999985

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7e-28  Score=217.21  Aligned_cols=241  Identities=21%  Similarity=0.371  Sum_probs=207.3

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC-cCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG-AADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      .+.|+++.|++ +|.+||+|..+|.|.|||..+.+....+.+ |...+.     ..-|+                     
T Consensus       217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg-----~laW~---------------------  269 (484)
T KOG0305|consen  217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG-----SLAWN---------------------  269 (484)
T ss_pred             CCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcCceeE-----EEecc---------------------
Confidence            89999999999 999999999999999999998888877766 433211     12222                     


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                        ...+.+|+.++.|..+|+...+.... +.+|...|..++|++++ .+||+|+.|+.+.|||.....  ....+..|..
T Consensus       270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~--p~~~~~~H~a  344 (484)
T KOG0305|consen  270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPE--PKFTFTEHTA  344 (484)
T ss_pred             --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCcc--ccEEEeccce
Confidence              23466788888999998887776555 88999999999999999 899999999999999996666  5778889999


Q ss_pred             ceEEEEecCCCCCEEEEEe--CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEe
Q 046899          241 DIHCVDWNPHDVNLILTGS--ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWD  317 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd  317 (407)
                      .|.+++|+|....+||+|+  .|+.|++||..+      ++.+..+.. ...|.+|.|++..+-|+++-+ .++.|.||+
T Consensus       345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~------g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~  417 (484)
T KOG0305|consen  345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNT------GARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWK  417 (484)
T ss_pred             eeeEeeeCCCccCceEEcCCCcccEEEEEEcCC------CcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence            9999999998889999975  589999999998      888888874 678999999999876654443 578899999


Q ss_pred             CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      ..+.+.+..+.+|...|..++.|||                  +..|++|+.|.++++|++-.
T Consensus       418 ~ps~~~~~~l~gH~~RVl~la~SPd------------------g~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  418 YPSMKLVAELLGHTSRVLYLALSPD------------------GETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             ccccceeeeecCCcceeEEEEECCC------------------CCEEEEecccCcEEeccccC
Confidence            9999999999999999999999999                  89999999999999999974

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=7.7e-28  Score=193.59  Aligned_cols=267  Identities=16%  Similarity=0.300  Sum_probs=218.8

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccc--cCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAV--LGAADSHPDLDQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      ....+|...|.+|+|+. +|..|++|+.|+++++|++.........  .+|...+     .-..|+...           
T Consensus        14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~sv-----dql~w~~~~-----------   76 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSV-----DQLCWDPKH-----------   76 (313)
T ss_pred             HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcch-----hhheeCCCC-----------
Confidence            34447999999999998 9999999999999999999877544433  2333221     112343322           


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                               ...+++++.+..+++||...+++........+. .-+.|+|+| .+++.++.|..|.+.|.++.+   ...
T Consensus        77 ---------~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~---~~~  142 (313)
T KOG1407|consen   77 ---------PDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYK---IVN  142 (313)
T ss_pred             ---------CcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCC-CEEEEecCcccEEEEEecccc---eee
Confidence                     235788899999999999999999888654444 467899999 899999999999999999877   333


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      .......++-++|+. ++++|+.-...|.|.|.....      .+++.++++|.....||.|+|+|+|+ |+|+.|..+.
T Consensus       143 ~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsyps------Lkpv~si~AH~snCicI~f~p~Gryf-A~GsADAlvS  214 (313)
T KOG1407|consen  143 EEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPS------LKPVQSIKAHPSNCICIEFDPDGRYF-ATGSADALVS  214 (313)
T ss_pred             hhcccceeeeeeecC-CCCEEEEecCCceEEEEeccc------cccccccccCCcceEEEEECCCCceE-eeccccceee
Confidence            345667788899985 777777767789999998887      89999999999999999999999985 8999999999


Q ss_pred             EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      +||+...-+++.+..++-||..+.||.|                  +.+|+++|.|-.|-|=++.      +|..+..++
T Consensus       215 LWD~~ELiC~R~isRldwpVRTlSFS~d------------------g~~lASaSEDh~IDIA~ve------tGd~~~eI~  270 (313)
T KOG1407|consen  215 LWDVDELICERCISRLDWPVRTLSFSHD------------------GRMLASASEDHFIDIAEVE------TGDRVWEIP  270 (313)
T ss_pred             ccChhHhhhheeeccccCceEEEEeccC------------------cceeeccCccceEEeEecc------cCCeEEEee
Confidence            9999999999999999999999999999                  9999999999988777776      677766665


Q ss_pred             hcccceeEeeccC
Q 046899          395 KFKSHIFGCDKSC  407 (407)
Q Consensus       395 ~h~~~v~~~~~s~  407 (407)
                       |.++.+.|||-|
T Consensus       271 -~~~~t~tVAWHP  282 (313)
T KOG1407|consen  271 -CEGPTFTVAWHP  282 (313)
T ss_pred             -ccCCceeEEecC
Confidence             777888888864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.7e-28  Score=201.90  Aligned_cols=235  Identities=17%  Similarity=0.295  Sum_probs=182.5

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      ..-+..|++++.+-+|+| +|.++|||+.|.+|+|.|+...-......   ..             ..            
T Consensus       105 t~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~---em-------------~~------------  155 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPK---EM-------------IS------------  155 (430)
T ss_pred             eEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchh---hh-------------cc------------
Confidence            334446999999999999 99999999999999999987431111000   00             00            


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCc-CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSI-GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                           |                  +.+.. -.++++-.|.++|+++.|+|.. .+|++|+.|++|++||+..........
T Consensus       156 -----~------------------~~qa~hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saKrA~K  211 (430)
T KOG0640|consen  156 -----G------------------DTQARHPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAKRAFK  211 (430)
T ss_pred             -----C------------------CcccCCceEeehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHHHHHHH
Confidence                 0                  00111 2467788899999999999998 899999999999999998765211222


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee---cCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF---EGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      ......+|.+++|+| .|.+|+.|..--.+++||+.+      .++...-   ..|.+.|+++.+++.++ |.+|++.||
T Consensus       212 ~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T------~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG  283 (430)
T KOG0640|consen  212 VFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNT------YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDG  283 (430)
T ss_pred             HhhccceeeeEeecC-CCceEEEecCCCceeEEeccc------eeEeeecCcccccccceeEEEecCCcc-EEEEeccCC
Confidence            223456899999999 999999999999999999998      4544332   35899999999999999 678999999


Q ss_pred             eEEEEeCCCCCccccccc-CC-CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH
Q 046899          312 ILNIWDHEKIGEKQDYGE-LK-YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV  389 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~~~~-~~-~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~  389 (407)
                      .|++||--+++++.++.. |+ ..|.+..|+.+                  +.+|++.+.|+.+++|.+.      ++.+
T Consensus       284 ~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn------------------~kyiLsSG~DS~vkLWEi~------t~R~  339 (430)
T KOG0640|consen  284 AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN------------------GKYILSSGKDSTVKLWEIS------TGRM  339 (430)
T ss_pred             cEEeeccccHHHHHHHHhhcCCceeeeEEEccC------------------CeEEeecCCcceeeeeeec------CCce
Confidence            999999999999988874 43 34666777666                  8899999999999999998      5666


Q ss_pred             HHHHhh
Q 046899          390 LAELDK  395 (407)
Q Consensus       390 ~~~~~~  395 (407)
                      +..+.|
T Consensus       340 l~~YtG  345 (430)
T KOG0640|consen  340 LKEYTG  345 (430)
T ss_pred             EEEEec
Confidence            655543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.1e-28  Score=223.67  Aligned_cols=275  Identities=13%  Similarity=0.169  Sum_probs=206.7

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      -+...++|...+ +-..|+.++. ..++|+.+.........              .+..  ........+...+...  .
T Consensus        38 ~k~~~nAIs~nr-~~~qiv~AGr-s~lklyai~~~~~~~~~--------------~~~~--k~kqn~~~S~~DVkW~--~   97 (839)
T KOG0269|consen   38 LKAKANAISVNR-DINQIVVAGR-SLLKLYAINPNDFSEKC--------------NHRF--KTKQNKFYSAADVKWG--Q   97 (839)
T ss_pred             cccccceEeecC-CcceeEEecc-cceeeEeeCcccCCcce--------------eeec--ccccceeeehhhcccc--c
Confidence            355677777777 5556666665 47888888755322111              1110  0001111111111111  2


Q ss_pred             CCCCccccccCCCCCCCCCCCC---cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899          162 GANSKNASKSGGNGDKPLESPS---IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                      -....+++++..|.|.+||+..   .+.+..+..|+..++++.|++..+++|++|+.||.|++||+|...  ...++.+.
T Consensus        98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~n  175 (839)
T KOG0269|consen   98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRSN  175 (839)
T ss_pred             chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--cccccccc
Confidence            2235678899999999999987   566678889999999999999999999999999999999999887  56677788


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~  318 (407)
                      ...|..+.|+|..++.|+++.+.|.+++||+|.+     .++...+.+|.++|.|+.|+|++.+| ||||.|+.|+|||.
T Consensus       176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp-----~r~~~k~~AH~GpV~c~nwhPnr~~l-ATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP-----DRCEKKLTAHNGPVLCLNWHPNREWL-ATGGRDKMVKIWDM  249 (839)
T ss_pred             chhhhceeeccCCCceEEEecCCceEEEeeccCc-----hhHHHHhhcccCceEEEeecCCCcee-eecCCCccEEEEec
Confidence            8899999999988999999999999999999987     47888999999999999999988864 89999999999999


Q ss_pred             CCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE--EeeeEEEeeccccccCChHHHHHHHhh
Q 046899          319 EKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT--MVKVLEIWRMIDLIYRPEEEVLAELDK  395 (407)
Q Consensus       319 ~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~  395 (407)
                      ...+.-.... ....||..+.|-|+.                 ...|++.+  .|..|+|||+..     .--+...+..
T Consensus       250 t~~~~~~~~tInTiapv~rVkWRP~~-----------------~~hLAtcsmv~dtsV~VWDvrR-----PYIP~~t~~e  307 (839)
T KOG0269|consen  250 TDSRAKPKHTINTIAPVGRVKWRPAR-----------------SYHLATCSMVVDTSVHVWDVRR-----PYIPYATFLE  307 (839)
T ss_pred             cCCCccceeEEeecceeeeeeeccCc-----------------cchhhhhhccccceEEEEeecc-----ccccceeeec
Confidence            8654433222 346688889998872                 34555444  455999999974     3345678889


Q ss_pred             cccceeEeecc
Q 046899          396 FKSHIFGCDKS  406 (407)
Q Consensus       396 h~~~v~~~~~s  406 (407)
                      |...|+.++|-
T Consensus       308 H~~~vt~i~W~  318 (839)
T KOG0269|consen  308 HTDSVTGIAWD  318 (839)
T ss_pred             cCccccceecc
Confidence            99999999883

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.2e-26  Score=200.38  Aligned_cols=252  Identities=19%  Similarity=0.315  Sum_probs=195.5

Q ss_pred             EEEee----cccccCccceEEEEeecccCcccC--CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC
Q 046899           42 CRWGP----QLEQATYKNRQRLYLSEQFNEEAR--SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA  115 (407)
Q Consensus        42 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  115 (407)
                      .+.+|    .+++....+.+.||--+....-..  .+.....++.+|+++-.+|+|++...-.|++|+.|++|++||+..
T Consensus       130 aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~  209 (422)
T KOG0264|consen  130 ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINA  209 (422)
T ss_pred             hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccc
Confidence            34555    377788888899994331111110  023345578899999999999998888999999999999999986


Q ss_pred             CCCc-------ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC-CCccccccCCCCCCCCCCC--CcC
Q 046899          116 QPNR-------HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESP--SIG  185 (407)
Q Consensus       116 ~~~~-------~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~--~~~  185 (407)
                      ....       ..+.+|...+.                          ..+.... ...+++.+.|+.+.|||..  +.+
T Consensus       210 ~~~~~~~~~p~~~~~~h~~~Ve--------------------------DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~  263 (422)
T KOG0264|consen  210 ESKEDKVVDPKTIFSGHEDVVE--------------------------DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK  263 (422)
T ss_pred             cccCCccccceEEeecCCccee--------------------------hhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence            5432       11122222211                          1111111 2356778888899999988  566


Q ss_pred             ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      +.....+|.++|+|++|+|.+..+||+|+.|++|++||+|+... ....+.+|...|.+|.|+|.....||+++.|+.+.
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN  342 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence            67778899999999999999889999999999999999999887 47788899999999999998899999999999999


Q ss_pred             EEeCCCCCC--------CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          266 MFDRRKLTS--------DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       266 vwd~~~~~~--------~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +||+.....        ++..+++..-.+|...|..+.|+|+.+++++|.+.|+.+.||++..
T Consensus       343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            999976443        2224566777899999999999999999999999999999999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.9e-27  Score=208.12  Aligned_cols=283  Identities=18%  Similarity=0.252  Sum_probs=193.2

Q ss_pred             CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc-cccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH-AVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      .|...++++.+|+..|.++++.| .|-.|+||+.|-+|++||+....... .+..   ..|+....|.         .+.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~---l~P~E~h~i~---------sl~  221 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQ---LQPCETHQIN---------SLQ  221 (641)
T ss_pred             CCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhc---cCcccccccc---------eee
Confidence            55666778888999999999999 88899999999999999998653211 1100   0000000010         011


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCce------------eeEeecccCEEEEEECCCCCcEEEEEeCCC
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR------------GKYLGHEDTVEDVQFCPSSAQEFCSVGDDS  217 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~------------~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg  217 (407)
                                .......+++.+.....+++|....+..            ...++|...++|.+|+|.....|++++.||
T Consensus       222 ----------ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg  291 (641)
T KOG0772|consen  222 ----------YSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG  291 (641)
T ss_pred             ----------ecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence                      1111123444445555555554433322            233579999999999999888999999999


Q ss_pred             cEEEEEcCCCCCCceeeec-----ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC--C
Q 046899          218 CLILWDARSGSTPAVKVEK-----AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA--A  290 (407)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~--~  290 (407)
                      ++++||+...+.. ...+.     +..-+++.++|+| +++.||+|..||+|.+||.+....   ......-.+|..  .
T Consensus       292 tlRiWdv~~~k~q-~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~g~~  366 (641)
T KOG0772|consen  292 TLRIWDVNNTKSQ-LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLPGQD  366 (641)
T ss_pred             cEEEEecCCchhh-eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc---ccceEeeeccCCCCc
Confidence            9999999876531 21211     2234688999999 999999999999999999876431   122334456877  8


Q ss_pred             EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc-ccc--CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899          291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD-YGE--LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL  367 (407)
Q Consensus       291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~-~~~--~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~  367 (407)
                      |+||.||++|++| +|-+.|+++++||+++.+.... ..+  ...+-+.++||||                  ...|++|
T Consensus       367 Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd------------------~kli~TG  427 (641)
T KOG0772|consen  367 ITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD------------------DKLILTG  427 (641)
T ss_pred             eeEEEeccccchh-hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCC------------------ceEEEec
Confidence            9999999999987 5999999999999998766543 333  3556788999999                  5556655


Q ss_pred             EE------eeeEEEeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899          368 TM------VKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       368 ~~------d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                      +.      .|++.+||-.      +-+.+..+.-....|..+.|-
T Consensus       428 tS~~~~~~~g~L~f~d~~------t~d~v~ki~i~~aSvv~~~Wh  466 (641)
T KOG0772|consen  428 TSAPNGMTAGTLFFFDRM------TLDTVYKIDISTASVVRCLWH  466 (641)
T ss_pred             ccccCCCCCceEEEEecc------ceeeEEEecCCCceEEEEeec
Confidence            43      4478888876      555555554445555555553

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.8e-27  Score=200.31  Aligned_cols=280  Identities=15%  Similarity=0.172  Sum_probs=217.0

Q ss_pred             EEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC
Q 046899           41 SCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP  117 (407)
Q Consensus        41 s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  117 (407)
                      .++|.+   .+++++.|.+.-+|..     ..+........+.+|..+|.-+.|+| +.++|++++.|..+++||+.++.
T Consensus       229 fl~FS~nGkyLAsaSkD~Taiiw~v-----~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd  302 (519)
T KOG0293|consen  229 FLQFSHNGKYLASASKDSTAIIWIV-----VYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGD  302 (519)
T ss_pred             EEEEcCCCeeEeeccCCceEEEEEE-----ecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcch
Confidence            345544   6999999999988833     22233455667779999999999999 77888899999999999999998


Q ss_pred             CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec-ccC
Q 046899          118 NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH-EDT  196 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~  196 (407)
                      ....+......    .-+-+.|-.++                     ..+++|+.|+.+..||..... ....++. ...
T Consensus       303 ~~~~y~~~~~~----S~~sc~W~pDg---------------------~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~  356 (519)
T KOG0293|consen  303 LRHLYPSGLGF----SVSSCAWCPDG---------------------FRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPK  356 (519)
T ss_pred             hhhhcccCcCC----CcceeEEccCC---------------------ceeEecCCCCcEEEecCCcch-hhcccccccce
Confidence            87766443211    12223443322                     236778888888888876433 3444432 357


Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG  276 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~  276 (407)
                      |.+++..++| .++++...|..|++++..+..  ... ...-..+|++++.+. +++++++.-.+..+++||++.     
T Consensus       357 v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~--dr~-lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e-----  426 (519)
T KOG0293|consen  357 VHDLAITYDG-KYVLLVTVDKKIRLYNREARV--DRG-LISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEE-----  426 (519)
T ss_pred             eEEEEEcCCC-cEEEEEecccceeeechhhhh--hhc-cccccCceeEEEEcC-CCcEEEEEcccCeeEEeecch-----
Confidence            9999999999 677788899999999988765  222 233456899999999 999999999999999999997     


Q ss_pred             CCCceeeecCCCCC--EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeee
Q 046899          277 VGSPIHKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSI  354 (407)
Q Consensus       277 ~~~~~~~~~~h~~~--v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~  354 (407)
                       ...++.+.+|...  +-.-+|--....++|+||.|+.|+||+..+++.+..+.+|...|.+++++|--           
T Consensus       427 -~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~-----------  494 (519)
T KOG0293|consen  427 -NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD-----------  494 (519)
T ss_pred             -hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC-----------
Confidence             7899999998764  44445655443467899999999999999999999999999999999999962           


Q ss_pred             eEeeCccceeeeEEEeeeEEEeeccc
Q 046899          355 GMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       355 ~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                            -.++++++.||+||||....
T Consensus       495 ------p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  495 ------PEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ------HHHhhccCCCCeEEEecCCc
Confidence                  66889999999999998863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=3.4e-26  Score=202.57  Aligned_cols=262  Identities=21%  Similarity=0.397  Sum_probs=205.0

Q ss_pred             CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      .-|..++.|.|.   +++++.++.+++|.   +....     .......|...+..+.|+| ++++|++++.||.|++||
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~---~~~~~-----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGSGDGTIKVWD---LETGE-----LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEeecCcEEEEEE---eeCCC-----cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEE
Confidence            456777888773   77788899999992   22111     2334457899999999999 678999999999999999


Q ss_pred             CcCCCCcccccCcCCCCCC-------------C-CCcEEEEeccccccc--cccCCCCCcccccCCCCCccccccCCCCC
Q 046899          113 VEAQPNRHAVLGAADSHPD-------------L-DQSVVLWSIQDHVSA--LAAEPGSAKSTASGGANSKNASKSGGNGD  176 (407)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~-------------~-d~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  176 (407)
                      +.+.+....+..+...+..             . ++.+.+|++.+....  +..+...+..+........++++..++.+
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  159 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI  159 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence            9986655554444322111             1 889999999855332  22233333333333334455556669999


Q ss_pred             CCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE
Q 046899          177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL  256 (407)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  256 (407)
                      .+||...++.+..+..|...+.+++|+|++ ..+++++.|+.|++||++.++  ....+..|...+.+++|+| ++.+++
T Consensus       160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~~~  235 (289)
T cd00200         160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK--CLGTLRGHENGVNSVAFSP-DGYLLA  235 (289)
T ss_pred             EEEEccccccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc--eecchhhcCCceEEEEEcC-CCcEEE
Confidence            999999999999999999999999999998 788888889999999999876  5666668888999999999 788888


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          257 TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       257 tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      +++.||.|++||++.      ++++..+..|...|.+++|+|++.++ ++++.|+.|++|+
T Consensus       236 ~~~~~~~i~i~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~  289 (289)
T cd00200         236 SGSEDGTIRVWDLRT------GECVQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD  289 (289)
T ss_pred             EEcCCCcEEEEEcCC------ceeEEEccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence            888899999999998      78888898999999999999998865 6999999999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=2.8e-27  Score=196.00  Aligned_cols=271  Identities=15%  Similarity=0.220  Sum_probs=226.9

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC--------CCCCC--------------CCC
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA--------DSHPD--------------LDQ  134 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--------~~~~~--------------~d~  134 (407)
                      ...++....+.|..|+| ++++|++|+.||.|.|||..+++....+.-..        ..+.+              .||
T Consensus       207 ~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG  285 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG  285 (508)
T ss_pred             heecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence            34456788899999999 99999999999999999999987665443211        11111              199


Q ss_pred             cEEEEeccccccccc---cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEE
Q 046899          135 SVVLWSIQDHVSALA---AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFC  211 (407)
Q Consensus       135 ~i~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  211 (407)
                      .|++|.+.++.+.-.   .+..++....+.+.++.+++++.|.++++--+++++++..+++|...|+...|.++| +.++
T Consensus       286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG-~~ii  364 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG-HHII  364 (508)
T ss_pred             cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC-CeEE
Confidence            999999999966433   567788888899999999999999999999999999999999999999999999999 8999


Q ss_pred             EEeCCCcEEEEEcCCCCCCceeeec--ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---
Q 046899          212 SVGDDSCLILWDARSGSTPAVKVEK--AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---  286 (407)
Q Consensus       212 s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---  286 (407)
                      +++.||+|++|+..+.+  +..++.  +...+|+++-.-|.+...++++....+|++-++.       ++.++++..   
T Consensus       365 saSsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-------GQvVrsfsSGkR  435 (508)
T KOG0275|consen  365 SASSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-------GQVVRSFSSGKR  435 (508)
T ss_pred             EecCCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-------ceEEeeeccCCc
Confidence            99999999999999988  555544  4456889998888788999999999999999998       588888864   


Q ss_pred             CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899          287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC  366 (407)
Q Consensus       287 h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~  366 (407)
                      ..+...+...+|.|.++. +.+.|+.+..+.+.+++...++..|...+.++                  .+.+|.+.|++
T Consensus       436 EgGdFi~~~lSpkGewiY-cigED~vlYCF~~~sG~LE~tl~VhEkdvIGl------------------~HHPHqNllAs  496 (508)
T KOG0275|consen  436 EGGDFINAILSPKGEWIY-CIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL------------------THHPHQNLLAS  496 (508)
T ss_pred             cCCceEEEEecCCCcEEE-EEccCcEEEEEEeecCceeeeeeccccccccc------------------ccCcccchhhh
Confidence            234566777999999885 77889999999999999999998888766554                  44566999999


Q ss_pred             EEEeeeEEEee
Q 046899          367 LTMVKVLEIWR  377 (407)
Q Consensus       367 ~~~d~~i~iwd  377 (407)
                      -+.||.+++|.
T Consensus       497 YsEDgllKLWk  507 (508)
T KOG0275|consen  497 YSEDGLLKLWK  507 (508)
T ss_pred             hcccchhhhcC
Confidence            99999999995

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.6e-26  Score=217.81  Aligned_cols=305  Identities=19%  Similarity=0.267  Sum_probs=231.7

Q ss_pred             CeeEEEEeec---ccccC--ccceEEEEeecccCc-----ccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCc
Q 046899           38 PSLSCRWGPQ---LEQAT--YKNRQRLYLSEQFNE-----EARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPD  107 (407)
Q Consensus        38 p~~s~~~~~~---~~~~~--~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~  107 (407)
                      +..+++-.|+   ++|++  .|+.++||....+..     +...|.. ......|.+.|+|++|+| +|++||+|++|+.
T Consensus        15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~-l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKH-LCTMDDHDGSVNCVRFSP-DGSYLASGSDDRL   92 (942)
T ss_pred             eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchh-heeeccccCceeEEEECC-CCCeEeeccCcce
Confidence            3667777775   77888  888888996662211     1112333 334446999999999999 9999999999999


Q ss_pred             EEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCce
Q 046899          108 VLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR  187 (407)
Q Consensus       108 i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~  187 (407)
                      |.||+.... ......+....    ...+.-|..   ...+..|...+..+.-...+..+++++.|+++.+|+..+.+.+
T Consensus        93 v~iW~~~~~-~~~~~fgs~g~----~~~vE~wk~---~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   93 VMIWERAEI-GSGTVFGSTGG----AKNVESWKV---VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             EEEeeeccc-CCccccccccc----ccccceeeE---EEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence            999998851 11111111111    111222221   1233445555555555566778999999999999999999999


Q ss_pred             eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc------CcceEEEEecCCCCCEEEEEeC-
Q 046899          188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH------NADIHCVDWNPHDVNLILTGSA-  260 (407)
Q Consensus       188 ~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~tg~~-  260 (407)
                      ..+++|...|..+.|.|-| ++||+-+.|++|++|++.+-.  ..+.+.++      ...+..+.|+| ||.+|++... 
T Consensus       165 ~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~--i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~  240 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWG--IEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAV  240 (942)
T ss_pred             eeeecccccccceEECCcc-CeeeeecCCceEEEEEcccce--eeEeeccchhhCCCcceeeecccCC-CcCeecchhhc
Confidence            9999999999999999999 899999999999999977644  34444333      23578899999 9999998743 


Q ss_pred             ---CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC--------C-------CC-EEEEeeCCCeEEEEeCCCC
Q 046899          261 ---DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD--------K-------SS-VFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       261 ---dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--------~-------~~-ll~s~~~d~~i~vwd~~~~  321 (407)
                         -.++.|.+..+      ++.-..|-+|.+++.+++|+|.        |       .| ++|+||.|++|.||.....
T Consensus       241 n~~~~~~~IieR~t------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~  314 (942)
T KOG0973|consen  241 NGGKSTIAIIERGT------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP  314 (942)
T ss_pred             cCCcceeEEEecCC------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence               34788999887      7888899999999999999971        1       12 7899999999999999887


Q ss_pred             Cccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          322 GEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       322 ~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      +.+..... ....|..++||||                  |-.|+++|.||+|.+..+.+
T Consensus       315 RPl~vi~~lf~~SI~DmsWspd------------------G~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  315 RPLFVIHNLFNKSIVDMSWSPD------------------GFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             CchhhhhhhhcCceeeeeEcCC------------------CCeEEEEecCCeEEEEEcch
Confidence            77765543 5778999999999                  88899999999999999974

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=2.5e-27  Score=189.54  Aligned_cols=280  Identities=17%  Similarity=0.234  Sum_probs=220.4

Q ss_pred             ecccCCCeeEEEEeec------ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCC
Q 046899           32 NHNLVWPSLSCRWGPQ------LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDS  105 (407)
Q Consensus        32 ~~~~~~p~~s~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d  105 (407)
                      -+.+.-|.+.+.|.|.      +.+++-|+.--+      ...+....+-  ...+|.+.|++..... +....|+++.|
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pml------r~g~tgdwig--tfeghkgavw~~~l~~-na~~aasaaad   80 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPML------RNGDTGDWIG--TFEGHKGAVWSATLNK-NATRAASAAAD   80 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchh------ccCCCCCcEE--eeeccCcceeeeecCc-hhhhhhhhccc
Confidence            3566678887777663      445555542211      2222333333  3448999999999776 77889999999


Q ss_pred             CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC
Q 046899          106 PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG  185 (407)
Q Consensus       106 g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~  185 (407)
                      -+-+|||.-++..+..+..                           ..-+...++......+++|+.+.-++++|++..+
T Consensus        81 ftakvw~a~tgdelhsf~h---------------------------khivk~~af~~ds~~lltgg~ekllrvfdln~p~  133 (334)
T KOG0278|consen   81 FTAKVWDAVTGDELHSFEH---------------------------KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK  133 (334)
T ss_pred             chhhhhhhhhhhhhhhhhh---------------------------hheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence            9999999998876655432                           1111222344445668899999999999998755


Q ss_pred             -ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899          186 -ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI  264 (407)
Q Consensus       186 -~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i  264 (407)
                       +...+.+|.+.|..+-|.... +.+++++.|++||+||.+++.  .+..+ ..+.+|+++..++ ++++|.++ ..+.|
T Consensus       134 App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt--~v~sL-~~~s~VtSlEvs~-dG~ilTia-~gssV  207 (334)
T KOG0278|consen  134 APPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGT--EVQSL-EFNSPVTSLEVSQ-DGRILTIA-YGSSV  207 (334)
T ss_pred             CCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCc--EEEEE-ecCCCCcceeecc-CCCEEEEe-cCcee
Confidence             456788999999999999877 678888999999999999998  45554 5677899999999 88877664 46789


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-ccCCCcccCCCCcCcc
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-GELKYPIIHPAYSSDM  343 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~  343 (407)
                      .+||..+      ..++..++. ...|.+..++|+.. +|++|+.|..++.||..++..+..+ .+|.+||.++.|||| 
T Consensus       208 ~Fwdaks------f~~lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd-  278 (334)
T KOG0278|consen  208 KFWDAKS------FGLLKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD-  278 (334)
T ss_pred             EEecccc------ccceeeccC-ccccccccccCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC-
Confidence            9999999      778887764 45689999999986 6789999999999999999999886 899999999999999 


Q ss_pred             hhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                       +...++||.||+||||...
T Consensus       279 -----------------GE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  279 -----------------GELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             -----------------CceeeccCCCceEEEEEec
Confidence                             8999999999999999886

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=2.2e-26  Score=189.54  Aligned_cols=284  Identities=15%  Similarity=0.217  Sum_probs=215.7

Q ss_pred             cCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeec---------ccCc-ccCCcceeeEEEeeCCCceEE
Q 046899           22 LVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSE---------QFNE-EARSPFVKKFKTIIHPGEVNR   88 (407)
Q Consensus        22 ~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~---------~~~~-~~~~~~~~~~~~~~h~~~v~~   88 (407)
                      ..|.-|+-....++.-|+..-.|.|+   ++||+.|..++|+-..         +... +.......+..+..|.++|++
T Consensus        98 ~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~  177 (430)
T KOG0640|consen   98 PEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND  177 (430)
T ss_pred             CCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence            45566666666777778888888775   8899999999999555         1111 112222344566689999999


Q ss_pred             EEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccc
Q 046899           89 IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNA  168 (407)
Q Consensus        89 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (407)
                      +.|+| ...+|++|+.|++|+++|+.+....+.+                                              
T Consensus       178 l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~----------------------------------------------  210 (430)
T KOG0640|consen  178 LDFHP-RETILISGSRDNTVKLFDFSKTSAKRAF----------------------------------------------  210 (430)
T ss_pred             eeecc-hhheEEeccCCCeEEEEecccHHHHHHH----------------------------------------------
Confidence            99999 7889999999999999999864332221                                              


Q ss_pred             cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee---eecccCcceEEE
Q 046899          169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK---VEKAHNADIHCV  245 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~v~~l  245 (407)
                                         ..+ ....+|.+|.|+|.| .+++.|..-.++++||+++.+  +..   ....|.+.|+++
T Consensus       211 -------------------K~~-qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Q--cfvsanPd~qht~ai~~V  267 (430)
T KOG0640|consen  211 -------------------KVF-QDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQ--CFVSANPDDQHTGAITQV  267 (430)
T ss_pred             -------------------HHh-hccceeeeEeecCCC-ceEEEecCCCceeEEecccee--EeeecCcccccccceeEE
Confidence                               111 234579999999999 789999999999999999987  333   235789999999


Q ss_pred             EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-CC-CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-HS-AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h~-~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      .+++ .+++.+||+.||.|++||--.      .+++.++.. |. ..|.+..|..+++|+| +++.|..+++|.+.+++.
T Consensus       268 ~Ys~-t~~lYvTaSkDG~IklwDGVS------~rCv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  268 RYSS-TGSLYVTASKDGAIKLWDGVS------NRCVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             EecC-CccEEEEeccCCcEEeecccc------HHHHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCce
Confidence            9999 999999999999999999887      789998864 54 4699999999999986 889999999999999999


Q ss_pred             ccccccCCCc-----ccCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEeeccccccCChHHHHHHHh-hc
Q 046899          324 KQDYGELKYP-----IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIWRMIDLIYRPEEEVLAELD-KF  396 (407)
Q Consensus       324 ~~~~~~~~~~-----v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~h  396 (407)
                      +..+.+.+..     -+...|+..                  .++++ .--..+.+.-||.+      ++..+..+. ||
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNht------------------EdyVl~pDEas~slcsWdaR------tadr~~l~slgH  395 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHT------------------EDYVLFPDEASNSLCSWDAR------TADRVALLSLGH  395 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCc------------------cceEEccccccCceeecccc------chhhhhhcccCC
Confidence            9988765321     122333332                  33444 22334478899998      677766665 89


Q ss_pred             ccceeEeeccC
Q 046899          397 KSHIFGCDKSC  407 (407)
Q Consensus       397 ~~~v~~~~~s~  407 (407)
                      .+.|..+.-||
T Consensus       396 n~a~R~i~HSP  406 (430)
T KOG0640|consen  396 NGAVRWIVHSP  406 (430)
T ss_pred             CCCceEEEeCC
Confidence            99998887664

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.1e-25  Score=175.09  Aligned_cols=296  Identities=19%  Similarity=0.232  Sum_probs=208.9

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeeccc------CcccCCc-ceeeEEEeeCCCceEEEEEeCCCCeEEEEee
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQF------NEEARSP-FVKKFKTIIHPGEVNRIRELPQNSKIVATHT  103 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~------~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~  103 (407)
                      +-.-...++.|.|.   .+.++++.+.|+..-+.+      .+....| ...+.+...|.+.|.|.+|+| .|++||||+
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgs  108 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGS  108 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecC
Confidence            33334556788773   667888889998854411      1223344 444445556899999999999 999999999


Q ss_pred             CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCC-ccc-cccCCCCCCCCCC
Q 046899          104 DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANS-KNA-SKSGGNGDKPLES  181 (407)
Q Consensus       104 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~i~i~d~  181 (407)
                      .|++|++.-++...+..  .+|.....--||+|+-.-+-..                ..... .++ .|..|..|.+-|.
T Consensus       109 ndk~ik~l~fn~dt~~~--~g~dle~nmhdgtirdl~fld~----------------~~s~~~il~s~gagdc~iy~tdc  170 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNA--TGHDLEFNMHDGTIRDLAFLDD----------------PESGGAILASAGAGDCKIYITDC  170 (350)
T ss_pred             CCceEEEEecccccccc--cCcceeeeecCCceeeeEEecC----------------CCcCceEEEecCCCcceEEEeec
Confidence            99999998877554332  2222111111555543322111                00011 122 2456667777789


Q ss_pred             CCcCceeeEeecccCEEEE-EECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--cc-----CcceEEEEecCCCCC
Q 046899          182 PSIGARGKYLGHEDTVEDV-QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--AH-----NADIHCVDWNPHDVN  253 (407)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~l-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~-----~~~v~~l~~~~~~~~  253 (407)
                      ..++..+.+.+|++.|.++ .|+  + .+|++|+.|.+|++||++-..  ++..+.  .|     .+.|.+++..| .++
T Consensus       171 ~~g~~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdp-sgr  244 (350)
T KOG0641|consen  171 GRGQGFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDP-SGR  244 (350)
T ss_pred             CCCCcceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECC-Ccc
Confidence            9999999999999999887 454  3 689999999999999999876  444432  22     25789999999 999


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC--c--cccccc
Q 046899          254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG--E--KQDYGE  329 (407)
Q Consensus       254 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~--~--~~~~~~  329 (407)
                      +|++|-.|.+..+||+|.      +.+++.+..|...|.++.|+|...|+| +|+.|..|++-|+...-  +  +.....
T Consensus       245 ll~sg~~dssc~lydirg------~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgdla~el~~~vv~e  317 (350)
T KOG0641|consen  245 LLASGHADSSCMLYDIRG------GRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGDLAHELPIMVVAE  317 (350)
T ss_pred             eeeeccCCCceEEEEeeC------CceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccchhhcCceEEEEe
Confidence            999999999999999999      899999999999999999999999886 99999999999987421  1  111223


Q ss_pred             CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          330 LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       330 ~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      |...+....|.|.                  .--.++.+.|.++.+|-++
T Consensus       318 hkdk~i~~rwh~~------------------d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  318 HKDKAIQCRWHPQ------------------DFSFISSSADKTATLWALN  349 (350)
T ss_pred             ccCceEEEEecCc------------------cceeeeccCcceEEEeccC
Confidence            4443333333322                  3345678889999999764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.4e-27  Score=203.26  Aligned_cols=295  Identities=19%  Similarity=0.221  Sum_probs=218.6

Q ss_pred             hhhhhhhhccCceEEEeeeecccCCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEE
Q 046899           13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNR   88 (407)
Q Consensus        13 ~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   88 (407)
                      ..++.-|++-.-.     ..++..-+..++.|.|    +++..++- ++.||...     ...+ .+.+  ..-+..|.+
T Consensus         8 t~e~~~w~~~~~~-----~~~ke~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~-----~~~~-~k~~--srFk~~v~s   73 (487)
T KOG0310|consen    8 TPEIRYWRQETFP-----PVHKEHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSV-----TRSV-RKTF--SRFKDVVYS   73 (487)
T ss_pred             Cccchhhhhhccc-----ccccccCcceeEecCCCCCCceEEeccc-EEEEEecc-----hhhh-hhhH--HhhccceeE
Confidence            3445556554221     2334444666778887    56665544 47777332     1111 1111  135678999


Q ss_pred             EEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccc
Q 046899           89 IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNA  168 (407)
Q Consensus        89 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (407)
                      +.|-. ||++||+|+..|.|+|+|+.+...+..+..|+..+..                ..       |.+  ..+..++
T Consensus        74 ~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~----------------~~-------f~~--~d~t~l~  127 (487)
T KOG0310|consen   74 VDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHV----------------TK-------FSP--QDNTMLV  127 (487)
T ss_pred             EEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeE----------------EE-------ecc--cCCeEEE
Confidence            99887 9999999999999999997775566666666554210                00       111  1124567


Q ss_pred             cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec
Q 046899          169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN  248 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~  248 (407)
                      +++.|+.+++||+.+...+..+.+|++.|.|.+|+|..+.+++|||.||+|++||++.... .+.+ ..|..+|-.+.+-
T Consensus       128 s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v~e-lnhg~pVe~vl~l  205 (487)
T KOG0310|consen  128 SGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RVVE-LNHGCPVESVLAL  205 (487)
T ss_pred             ecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-eeEE-ecCCCceeeEEEc
Confidence            7888899999999988876688999999999999998878999999999999999998852 3444 4899999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          249 PHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       249 ~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                      | .|..+++++ ...|++||+-+.     ++.+..+..|...|+|+++..++..|+ ||+-|+.|++||+.+.+.+..+.
T Consensus       206 p-sgs~iasAg-Gn~vkVWDl~~G-----~qll~~~~~H~KtVTcL~l~s~~~rLl-S~sLD~~VKVfd~t~~Kvv~s~~  277 (487)
T KOG0310|consen  206 P-SGSLIASAG-GNSVKVWDLTTG-----GQLLTSMFNHNKTVTCLRLASDSTRLL-SGSLDRHVKVFDTTNYKVVHSWK  277 (487)
T ss_pred             C-CCCEEEEcC-CCeEEEEEecCC-----ceehhhhhcccceEEEEEeecCCceEe-ecccccceEEEEccceEEEEeee
Confidence            9 888999887 457999999862     455556666999999999999998875 99999999999988877666553


Q ss_pred             cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          329 ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       329 ~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                       ..+||.+++.|||                  +..++.|..+|.+-+=
T Consensus       278 -~~~pvLsiavs~d------------------d~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  278 -YPGPVLSIAVSPD------------------DQTVVIGMSNGLVSIR  306 (487)
T ss_pred             -cccceeeEEecCC------------------CceEEEecccceeeee
Confidence             4678888888887                  7778888888866554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=198.09  Aligned_cols=265  Identities=16%  Similarity=0.231  Sum_probs=213.4

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      ..+.++...| ..+.++||+.|..+.++|..+++.+..+.+|...+         -++.                 ....
T Consensus       220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki---------~~v~-----------------~~~~  272 (506)
T KOG0289|consen  220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKI---------TSVK-----------------FHKD  272 (506)
T ss_pred             CCeeEEeecC-CCCcceecCCCCceEEEecchhhhhhhccCcceEE---------EEEE-----------------eccc
Confidence            5677887777 46789999999999999999999998888875432         1111                 2222


Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH  243 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  243 (407)
                      .....+++.+..|++|.............|..+|+.+..+|.| .||++++.|+...+.|++++.......-....-.++
T Consensus       273 ~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t  351 (506)
T KOG0289|consen  273 LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT  351 (506)
T ss_pred             hhheeecCCcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence            2345667888899999988888888888999999999999999 899999999999999999998422222222345689


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      +.+|+| ||.+|++|..||.|+|||+..      ...+..|.+|+++|..++|+.+|-|| |+++.|+.|++||+++.+.
T Consensus       352 s~~fHp-DgLifgtgt~d~~vkiwdlks------~~~~a~Fpght~~vk~i~FsENGY~L-at~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  352 SAAFHP-DGLIFGTGTPDGVVKIWDLKS------QTNVAKFPGHTGPVKAISFSENGYWL-ATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             EeeEcC-CceEEeccCCCceEEEEEcCC------ccccccCCCCCCceeEEEeccCceEE-EEEecCCeEEEEEehhhcc
Confidence            999999 999999999999999999999      78899999999999999999999876 7999999999999999888


Q ss_pred             ccccccCC-CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeE
Q 046899          324 KQDYGELK-YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFG  402 (407)
Q Consensus       324 ~~~~~~~~-~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  402 (407)
                      ..++.-.. .++..+.|.+.                  +.+++.++.|=.|++++-.    ...+.++..+.-|.+..++
T Consensus       424 ~kt~~l~~~~~v~s~~fD~S------------------Gt~L~~~g~~l~Vy~~~k~----~k~W~~~~~~~~~sg~st~  481 (506)
T KOG0289|consen  424 FKTIQLDEKKEVNSLSFDQS------------------GTYLGIAGSDLQVYICKKK----TKSWTEIKELADHSGLSTG  481 (506)
T ss_pred             cceeeccccccceeEEEcCC------------------CCeEEeecceeEEEEEecc----cccceeeehhhhcccccce
Confidence            87776433 35666666554                  7778777666677777643    2257888999999988888


Q ss_pred             eecc
Q 046899          403 CDKS  406 (407)
Q Consensus       403 ~~~s  406 (407)
                      |.|.
T Consensus       482 v~Fg  485 (506)
T KOG0289|consen  482 VRFG  485 (506)
T ss_pred             eeec
Confidence            8884

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.5e-26  Score=200.00  Aligned_cols=294  Identities=16%  Similarity=0.203  Sum_probs=221.5

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      .....|.-+|.+|+++| ++.+.++++.||+|.-|++.++.....+......       ++.--....... ..+.....
T Consensus       136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-------~k~~~~~~k~~r-~~h~keil  206 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-------LKSHGNPLKESR-KGHVKEIL  206 (479)
T ss_pred             eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchh-------hhhccCCCCccc-ccccceeE
Confidence            34446999999999998 8889999999999999999988755322111000       000000000000 13334445


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                      .++.+....++++++.|..+.||+..+++.++.+.+|.+.|.+++|-..- +.+++++.|++|++|++....  .+.++.
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s--~vetly  283 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLS--YVETLY  283 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhH--HHHHHh
Confidence            56667777889999999999999999999999999999999999997644 789999999999999999877  788899


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      +|++.|.+|.... -++.+-+|+.|+++++|++..       +....+.+|.+.+-|++|-.+..  |+|||.||.|.+|
T Consensus       284 GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e-------esqlifrg~~~sidcv~~In~~H--fvsGSdnG~IaLW  353 (479)
T KOG0299|consen  284 GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE-------ESQLIFRGGEGSIDCVAFINDEH--FVSGSDNGSIALW  353 (479)
T ss_pred             CCccceeeechhc-ccceEEeccccceeEEEeccc-------cceeeeeCCCCCeeeEEEecccc--eeeccCCceEEEe
Confidence            9999999999987 778888888999999999954       56667888999999999997766  4699999999999


Q ss_pred             eCCCCCcccccccCCC------cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899          317 DHEKIGEKQDYGELKY------PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL  390 (407)
Q Consensus       317 d~~~~~~~~~~~~~~~------~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~  390 (407)
                      ++-+.+.+.+.....+      ++....|           +.++.+..+ .+.+++|+-+|+||+|.+.+...  .-+++
T Consensus       354 s~~KKkplf~~~~AHgv~~~~~~~~~~~W-----------itsla~i~~-sdL~asGS~~G~vrLW~i~~g~r--~i~~l  419 (479)
T KOG0299|consen  354 SLLKKKPLFTSRLAHGVIPELDPVNGNFW-----------ITSLAVIPG-SDLLASGSWSGCVRLWKIEDGLR--AINLL  419 (479)
T ss_pred             eecccCceeEeeccccccCCccccccccc-----------eeeeEeccc-CceEEecCCCCceEEEEecCCcc--cccee
Confidence            9998777755443221      1111112           344455554 88999999999999999984322  12445


Q ss_pred             HHHhhcccceeEeeccC
Q 046899          391 AELDKFKSHIFGCDKSC  407 (407)
Q Consensus       391 ~~~~~h~~~v~~~~~s~  407 (407)
                      ..+. -.+.|++++|+.
T Consensus       420 ~~ls-~~GfVNsl~f~~  435 (479)
T KOG0299|consen  420 YSLS-LVGFVNSLAFSN  435 (479)
T ss_pred             eecc-cccEEEEEEEcc
Confidence            5555 677899999873

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=5.2e-26  Score=183.12  Aligned_cols=262  Identities=18%  Similarity=0.249  Sum_probs=210.5

Q ss_pred             cCCCeeEEEEe---ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899           35 LVWPSLSCRWG---PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW  111 (407)
Q Consensus        35 ~~~p~~s~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  111 (407)
                      ..-++.++.|.   ..+++++.|+++++|...      ...+.......+|.+.|-.++|.|...+++++++.|.+|++|
T Consensus        19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e------~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLE------RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             hhhcceEEEEcccCceeeecccCCceEEEEec------chhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            34467778774   469999999999999433      124444555668999999999999999999999999999999


Q ss_pred             eCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe
Q 046899          112 DVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL  191 (407)
Q Consensus       112 d~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~  191 (407)
                      |+..+++...+.....      .....|...                     +..++.+..+..+...|..+.+.+...+
T Consensus        93 d~r~~k~~~~i~~~~e------ni~i~wsp~---------------------g~~~~~~~kdD~it~id~r~~~~~~~~~  145 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGE------NINITWSPD---------------------GEYIAVGNKDDRITFIDARTYKIVNEEQ  145 (313)
T ss_pred             EeccCcEEEEeeccCc------ceEEEEcCC---------------------CCEEEEecCcccEEEEEecccceeehhc
Confidence            9999887765533211      122333322                     2346667778888888888777766654


Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                       ....++.++|+.++ ++|+..+..|.|.|-.....+  .+..+.+|+....||.|+| +|++||+|+.|..+.+||+..
T Consensus       146 -~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk--pv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  146 -FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK--PVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             -ccceeeeeeecCCC-CEEEEecCCceEEEEeccccc--cccccccCCcceEEEEECC-CCceEeeccccceeeccChhH
Confidence             45678889999766 777777778999999888766  6888999999999999999 999999999999999999999


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                            .-+++.+..+.=+|+.+.|+.+|++| |++|.|..|-|=+++++..+-.++ +.+|-..++|.|.
T Consensus       221 ------LiC~R~isRldwpVRTlSFS~dg~~l-ASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  221 ------LICERCISRLDWPVRTLSFSHDGRML-ASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPK  283 (313)
T ss_pred             ------hhhheeeccccCceEEEEeccCccee-eccCccceEEeEecccCCeEEEee-ccCCceeEEecCC
Confidence                  78999999999999999999999965 899999999999999998877665 3566677888776

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-26  Score=207.79  Aligned_cols=270  Identities=19%  Similarity=0.235  Sum_probs=221.3

Q ss_pred             eCCCceE---EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC------cccccCcCCCCCCC--------------CCcEE
Q 046899           81 IHPGEVN---RIRELPQNSKIVATHTDSPDVLIWDVEAQPN------RHAVLGAADSHPDL--------------DQSVV  137 (407)
Q Consensus        81 ~h~~~v~---~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~--------------d~~i~  137 (407)
                      .|...|+   .+...++++++|.|||.||.|++|++.....      ...++.|..++.+.              |-+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence            3566666   5666666888999999999999999876533      45566677776655              89999


Q ss_pred             EEeccccc----cccccCCCCCccccc-CCCCCccccccCCCCCCCCCCCCcCc--ee--------eEe-ecccCEEEEE
Q 046899          138 LWSIQDHV----SALAAEPGSAKSTAS-GGANSKNASKSGGNGDKPLESPSIGA--RG--------KYL-GHEDTVEDVQ  201 (407)
Q Consensus       138 ~w~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~d~~~~~~--~~--------~~~-~~~~~v~~l~  201 (407)
                      +|+.....    ..+..|.+.+.+++. .......++|+-|+.|.+||++++..  +.        .+. ++..+|++++
T Consensus        99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen   99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            99988762    356667777777666 66667788899999999999997732  22        222 6788999999


Q ss_pred             ECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899          202 FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       202 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                      .++.+ ..|++|+..+.|++||.++..  .+..+.+|...|.++..++ +|+.+++++.||+|++||+..      ..++
T Consensus       179 ~N~t~-t~ivsGgtek~lr~wDprt~~--kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgq------QrCl  248 (735)
T KOG0308|consen  179 MNQTG-TIIVSGGTEKDLRLWDPRTCK--KIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQ------QRCL  248 (735)
T ss_pred             cCCcc-eEEEecCcccceEEecccccc--ceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccc------ccee
Confidence            99999 899999999999999999988  6778889999999999999 999999999999999999999      8999


Q ss_pred             eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcc
Q 046899          282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG  361 (407)
Q Consensus       282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~  361 (407)
                      .++..|+..|++++.+|+-.+++ +|+.||.|..=|+++......+...+.||..+....                  |.
T Consensus       249 ~T~~vH~e~VWaL~~~~sf~~vY-sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~------------------~~  309 (735)
T KOG0308|consen  249 ATYIVHKEGVWALQSSPSFTHVY-SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE------------------HD  309 (735)
T ss_pred             eeEEeccCceEEEeeCCCcceEE-ecCCCCcEEecccCCchhheEeecCCCchhhhhhcc------------------cc
Confidence            99999999999999999988774 999999999999999766666666667766555432                  25


Q ss_pred             ceeeeEEEeeeEEEeecc
Q 046899          362 RLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       362 ~~i~~~~~d~~i~iwd~~  379 (407)
                      +.+-+++.|+.|+-|...
T Consensus       310 ~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  310 NSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             CCceeeeccccceecCCc
Confidence            556777888888888664

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.6e-26  Score=196.11  Aligned_cols=266  Identities=18%  Similarity=0.302  Sum_probs=196.7

Q ss_pred             hhhhhhccCceEEEeeeecc--cCCCeeEEEEee----------cccccCccceEEEEeecccCcccC-CcceeeE----
Q 046899           15 RYTQWKSLVPVLYDWLANHN--LVWPSLSCRWGP----------QLEQATYKNRQRLYLSEQFNEEAR-SPFVKKF----   77 (407)
Q Consensus        15 ~~~~w~~~~~~~y~~l~~~~--~~~p~~s~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~----   77 (407)
                      ++-.+++..|-+|   .+|.  ++-+.+.++|+.          .++.|+.+-.+.||   +++--+. .|.+..-    
T Consensus       153 EvYVyn~~e~nlY---vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW---DLDI~d~v~P~~~LGs~~s  226 (463)
T KOG0270|consen  153 EVYVYNEEEENLY---VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW---DLDIVDAVLPCVTLGSKAS  226 (463)
T ss_pred             EEEEEcCCCccee---EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe---ccccccccccceeechhhh
Confidence            3344555555555   4455  344556778854          36677778888899   3332221 1111111    


Q ss_pred             -----------EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccc
Q 046899           78 -----------KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVS  146 (407)
Q Consensus        78 -----------~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~  146 (407)
                                 ...+|++.|.+|+|+....++||+||.|.+|++||+.++++.                           
T Consensus       227 k~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~---------------------------  279 (463)
T KOG0270|consen  227 KKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK---------------------------  279 (463)
T ss_pred             hhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc---------------------------
Confidence                       123699999999999878889999999999999999887543                           


Q ss_pred             ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 046899          147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS  226 (407)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~  226 (407)
                                                               .++..|.+.|.+++|+|..+..|++|+.|++|.+.|.|.
T Consensus       280 -----------------------------------------~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  280 -----------------------------------------SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             -----------------------------------------eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence                                                     334458899999999999989999999999999999996


Q ss_pred             CCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899          227 GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       227 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                      ...  ....-...+.|-.+.|+|.....++++..||+|+-+|+|.+     ++++.++++|.++|.+|.+++.-+.+++|
T Consensus       319 ~~~--s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----~~~vwt~~AHd~~ISgl~~n~~~p~~l~t  391 (463)
T KOG0270|consen  319 PSN--SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----GKPVWTLKAHDDEISGLSVNIQTPGLLST  391 (463)
T ss_pred             ccc--cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-----CCceeEEEeccCCcceEEecCCCCcceee
Confidence            442  11112346788999999988899999999999999999996     59999999999999999999999999999


Q ss_pred             eeCCCeEEEEeCCCCCcccccccCCCc---ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          307 SAEDGILNIWDHEKIGEKQDYGELKYP---IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       307 ~~~d~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      ++.|+.|++|++..... .....|...   ..+.++.|+.                 ...++.|+..+.++|||+.
T Consensus       392 ~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~-----------------a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDV-----------------AFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             ccccceEEEEeecCCCC-cccccccccccceeecccCCCc-----------------ceEEEecCccceEEEeecc
Confidence            99999999999986332 222222221   2233343331                 3456677777799999998

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=4.4e-25  Score=189.55  Aligned_cols=303  Identities=12%  Similarity=0.126  Sum_probs=225.6

Q ss_pred             ccCcchhhhhhhhccCceEEEeeeecccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCccee-eEEEeeCC
Q 046899            8 MERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVK-KFKTIIHP   83 (407)
Q Consensus         8 ~~~~~~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~h~   83 (407)
                      +.....|+.....+-++..  -|+..+.+ ...+++..|   .+.+++.|.+.-++         +.|... ...+.||.
T Consensus       194 ~~la~~d~~~~~~q~ash~--gLH~t~~p-gi~ald~~~s~~~ilTGG~d~~av~~---------d~~s~q~l~~~~Gh~  261 (506)
T KOG0289|consen  194 EKLATTDELSCLLQVASHT--GLHSTSTP-GITALDIIPSSSKILTGGEDKTAVLF---------DKPSNQILATLKGHT  261 (506)
T ss_pred             cccccHHHHHHHHhcCCCc--ceeccCCC-CeeEEeecCCCCcceecCCCCceEEE---------ecchhhhhhhccCcc
Confidence            3344466666677777753  23444444 344555544   57889999778777         222222 22334899


Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      ..|+.+.|+| +...+++++.|..|+||......+......|...+.                          +......
T Consensus       262 kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~--------------------------~ls~h~t  314 (506)
T KOG0289|consen  262 KKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT--------------------------GLSLHPT  314 (506)
T ss_pred             eEEEEEEecc-chhheeecCCcceEEeeccccccCccccccccccce--------------------------eeeeccC
Confidence            9999999999 888999999999999999987766655555544321                          1122223


Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeec--ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGH--EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD  241 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  241 (407)
                      ..++++++.++.....|..++..+......  .-.+++.+||||| .+|.+|..||.|++||+.++.  ....+.+|.++
T Consensus       315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~--~~a~Fpght~~  391 (506)
T KOG0289|consen  315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGP  391 (506)
T ss_pred             CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCcc--ccccCCCCCCc
Confidence            345788888888888888888877766542  2358999999999 899999999999999999888  67788899999


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC-
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE-  319 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~-  319 (407)
                      |..++|+. +|.+|+++..|+.|++||+|.      .+...++... ...|.++.|.+.|.+| +.++.|=+|.+++-. 
T Consensus       392 vk~i~FsE-NGY~Lat~add~~V~lwDLRK------l~n~kt~~l~~~~~v~s~~fD~SGt~L-~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  392 VKAISFSE-NGYWLATAADDGSVKLWDLRK------LKNFKTIQLDEKKEVNSLSFDQSGTYL-GIAGSDLQVYICKKKT  463 (506)
T ss_pred             eeEEEecc-CceEEEEEecCCeEEEEEehh------hcccceeeccccccceeEEEcCCCCeE-EeecceeEEEEEeccc
Confidence            99999999 999999999999999999999      5555555432 2379999999999987 577666566665522 


Q ss_pred             -CCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          320 -KIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       320 -~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                       +..++..+..|.+..+++.|...                  ..+++++++|..++|+.+
T Consensus       464 k~W~~~~~~~~~sg~st~v~Fg~~------------------aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  464 KSWTEIKELADHSGLSTGVRFGEH------------------AQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccceeeehhhhcccccceeeeccc------------------ceEEeeccchhheEEeec
Confidence             55666777777777777777544                  778999999999888764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8e-26  Score=180.36  Aligned_cols=241  Identities=19%  Similarity=0.292  Sum_probs=189.8

Q ss_pred             ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE-eCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC
Q 046899           46 PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE-LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG  124 (407)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~  124 (407)
                      ..++|.++|+.+||+     ..+++.+......+.||.++|+.++| +|.-|.+||++++||.|.||.-..++-.     
T Consensus        24 krlATcsSD~tVkIf-----~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~-----   93 (299)
T KOG1332|consen   24 KRLATCSSDGTVKIF-----EVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT-----   93 (299)
T ss_pred             ceeeeecCCccEEEE-----EEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh-----
Confidence            458999999999999     44455555667777899999999998 4678999999999999999997765211     


Q ss_pred             cCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC
Q 046899          125 AADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP  204 (407)
Q Consensus       125 ~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~  204 (407)
                                                                                   .......|...|++++|-|
T Consensus        94 -------------------------------------------------------------k~~e~~~h~~SVNsV~wap  112 (299)
T KOG1332|consen   94 -------------------------------------------------------------KAYEHAAHSASVNSVAWAP  112 (299)
T ss_pred             -------------------------------------------------------------hhhhhhhhcccceeecccc
Confidence                                                                         1234457999999999988


Q ss_pred             CC-CcEEEEEeCCCcEEEEEcCCC-CCCceeeecccCcceEEEEecCCC--C-----------CEEEEEeCCCcEEEEeC
Q 046899          205 SS-AQEFCSVGDDSCLILWDARSG-STPAVKVEKAHNADIHCVDWNPHD--V-----------NLILTGSADNSIHMFDR  269 (407)
Q Consensus       205 ~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~~~~~--~-----------~~l~tg~~dg~i~vwd~  269 (407)
                      .+ +.+|++++.||.|.+.+.+.. .....+....|.-.|++++|.|..  +           +.|++|+.|..|+||+.
T Consensus       113 heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~  192 (299)
T KOG1332|consen  113 HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF  192 (299)
T ss_pred             cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec
Confidence            64 257999999999999999876 333455677899999999999831  2           56999999999999999


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCC---CCEEEEeeCCCeEEEEeCCCCCcc---cccccCCCcccCCCCcCcc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGILNIWDHEKIGEK---QDYGELKYPIIHPAYSSDM  343 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~ll~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~d~  343 (407)
                      ....    ...-.+|.+|.+.|+.++|.|.-   +.-||+++.||++.||-.+.....   .-+.....+++.+.||.. 
T Consensus       193 ~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s-  267 (299)
T KOG1332|consen  193 DSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS-  267 (299)
T ss_pred             CCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc-
Confidence            8742    55666799999999999999964   334699999999999987732111   223345566777888765 


Q ss_pred             hhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                       ++.|+.+..|..|.+|.-+
T Consensus       268 -----------------Gn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  268 -----------------GNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             -----------------ccEEEEecCCcEEEEEEeC
Confidence                             7888888899999999865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=5.3e-26  Score=183.64  Aligned_cols=285  Identities=15%  Similarity=0.125  Sum_probs=207.6

Q ss_pred             cccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899           33 HNLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL  109 (407)
Q Consensus        33 ~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~  109 (407)
                      ..++-|...+.++.   .+.+..-|....+|.+.      +..  ..-...||++.|+|+...- +.+.|+||+.|.+++
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~------nGe--rlGty~GHtGavW~~Did~-~s~~liTGSAD~t~k   77 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL------NGE--RLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAK   77 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceEEEec------CCc--eeeeecCCCceEEEEEecC-CcceeeeccccceeE
Confidence            34566666666654   36677778888899442      222  2334459999999999776 788999999999999


Q ss_pred             EEeCcCCCCcccccCcCCCCCCC---CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC----
Q 046899          110 IWDVEAQPNRHAVLGAADSHPDL---DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP----  182 (407)
Q Consensus       110 vwd~~~~~~~~~~~~~~~~~~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~----  182 (407)
                      +||+.+++++.............   ++++.+...+..                         -+..+.+.++|++    
T Consensus        78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~-------------------------mg~~~~v~~fdi~~~~~  132 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ-------------------------MGYTCFVSVFDIRDDSS  132 (327)
T ss_pred             EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh-------------------------cCcceEEEEEEccCChh
Confidence            99999998766544322110000   222222222110                         1112222333332    


Q ss_pred             ---CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe
Q 046899          183 ---SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS  259 (407)
Q Consensus       183 ---~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~  259 (407)
                         ..+++..+..+...++..-|.|-+ ..+++|.+||.|..||++++.. .+.....|...|+.|+++| +..+++||+
T Consensus       133 ~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~-d~T~FiT~s  209 (327)
T KOG0643|consen  133 DIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSR-DRTYFITGS  209 (327)
T ss_pred             hhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccC-CcceEEecc
Confidence               455677777788999999999999 8999999999999999999863 4566678999999999999 999999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-eEE------------EEeCCCCCcccc
Q 046899          260 ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-ILN------------IWDHEKIGEKQD  326 (407)
Q Consensus       260 ~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-~i~------------vwd~~~~~~~~~  326 (407)
                      .|.+-++||+++      .+.+.++.. ..||++.+++|...+++.-|+.+. .|.            +|++--.+++..
T Consensus       210 ~Dttakl~D~~t------l~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr  282 (327)
T KOG0643|consen  210 KDTTAKLVDVRT------LEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR  282 (327)
T ss_pred             cCccceeeeccc------eeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence            999999999999      788888874 789999999998887764444332 122            222222344456


Q ss_pred             cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +.+|=+||.+++|+|+                  +...++|+.||.|||....
T Consensus       283 vkGHFGPINsvAfhPd------------------GksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  283 VKGHFGPINSVAFHPD------------------GKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ccccccCcceeEECCC------------------CcccccCCCCceEEEEEec
Confidence            7789999999999999                  8889999999999998765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=3.5e-26  Score=195.07  Aligned_cols=262  Identities=18%  Similarity=0.222  Sum_probs=206.3

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      .+.|....++|++.   +++++.|..+++|..   ..+.   .-....+.|-.+.|+++.|.+ ++..+++++.|+.+++
T Consensus       173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v---~~~k---~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNV---LGEK---SELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRL  245 (459)
T ss_pred             ccccccceeEEccCcchhhhcchhhhhhhhhc---ccch---hhhhhhhhccCCCcceeeecC-CCceEEeecCCCceee
Confidence            35778888999886   899999999999921   1111   112334446778999999998 7778888899999999


Q ss_pred             EeCcCCCCcccccCcCCCCCCC--------------CCcEEEEeccccccccccCCCCCcc-cccCCCCCccccccCCCC
Q 046899          111 WDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSALAAEPGSAKS-TASGGANSKNASKSGGNG  175 (407)
Q Consensus       111 wd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  175 (407)
                      |++.......++.+|...+...              |.++++||+....+.-..-+..... +..+  ...++++-.|+.
T Consensus       246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK  323 (459)
T ss_pred             eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence            9999999888888888766554              8999999999864433322222111 1111  345677889999


Q ss_pred             CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc----CcceEEEEecCCC
Q 046899          176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH----NADIHCVDWNPHD  251 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~~~~~  251 (407)
                      ++.||.....+......+. .|+++..++++ ..+.+++.|.++.+.|+++..  ....+.+.    ....+.+.|+| +
T Consensus       324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~e--I~~~~sA~g~k~asDwtrvvfSp-d  398 (459)
T KOG0288|consen  324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKE--IRQTFSAEGFKCASDWTRVVFSP-D  398 (459)
T ss_pred             eEEEeccCCceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccccc--EEEEeeccccccccccceeEECC-C
Confidence            9999999999998887665 89999999999 678888999999999999887  34444322    23578899999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC--CEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      +.|+++|+.||.|+||++.+      +++...+.....  .|++++|+|.|.+++ +++.++.+++|
T Consensus       399 ~~YvaAGS~dgsv~iW~v~t------gKlE~~l~~s~s~~aI~s~~W~~sG~~Ll-sadk~~~v~lW  458 (459)
T KOG0288|consen  399 GSYVAAGSADGSVYIWSVFT------GKLEKVLSLSTSNAAITSLSWNPSGSGLL-SADKQKAVTLW  458 (459)
T ss_pred             CceeeeccCCCcEEEEEccC------ceEEEEeccCCCCcceEEEEEcCCCchhh-cccCCcceEec
Confidence            99999999999999999999      777777766433  599999999999985 89999999999

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=3.3e-25  Score=201.11  Aligned_cols=306  Identities=15%  Similarity=0.197  Sum_probs=222.7

Q ss_pred             cccccCccceEEEEeecccCcccCCccee----------------eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVK----------------KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      .++.|+.++.+|||....++.-...|...                .....+---..-++.|.+ ..+.|.+...|..+.|
T Consensus       272 ~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fde-t~~klscVYndhSlYv  350 (1080)
T KOG1408|consen  272 LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDE-TTDKLSCVYNDHSLYV  350 (1080)
T ss_pred             eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecC-CCceEEEEEcCceEEE
Confidence            47788999999999776332222211111                000011112234566777 5667888899999999


Q ss_pred             EeCcCCCCcccc---cCcCCCC------------------CCC-------CCcEEEEecccccc--c-----c-------
Q 046899          111 WDVEAQPNRHAV---LGAADSH------------------PDL-------DQSVVLWSIQDHVS--A-----L-------  148 (407)
Q Consensus       111 wd~~~~~~~~~~---~~~~~~~------------------~~~-------d~~i~~w~~~~~~~--~-----~-------  148 (407)
                      ||++....+...   .-|...+                  +..       |++|++|++.....  .     +       
T Consensus       351 WDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki  430 (1080)
T KOG1408|consen  351 WDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKI  430 (1080)
T ss_pred             EeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcC
Confidence            999875433211   1111111                  100       99999999876200  0     0       


Q ss_pred             c-------------------------cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEEC
Q 046899          149 A-------------------------AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC  203 (407)
Q Consensus       149 ~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~  203 (407)
                      .                         ....+...+........+++|...|.++++++...+....+.+|+.+|.|+.|+
T Consensus       431 ~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS  510 (1080)
T KOG1408|consen  431 PYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYS  510 (1080)
T ss_pred             ccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeec
Confidence            0                         000112223334444678889999999999999999999999999999999998


Q ss_pred             CC--CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE--------------------------------------
Q 046899          204 PS--SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH--------------------------------------  243 (407)
Q Consensus       204 ~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~--------------------------------------  243 (407)
                      ..  +..+||+++.|..|++||+...-. ++.++.+|...|+                                      
T Consensus       511 ~p~~~~kLLASasrdRlIHV~Dv~rny~-l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r  589 (1080)
T KOG1408|consen  511 FPVLTNKLLASASRDRLIHVYDVKRNYD-LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR  589 (1080)
T ss_pred             CchhhhHhhhhccCCceEEEEecccccc-hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence            53  336899999999999999975421 3444455554444                                      


Q ss_pred             -----------EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeC
Q 046899          244 -----------CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       244 -----------~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                                 .++..| ...++++++.|..|+|||+.+      ++..+.|++   |++....+...|.|-|| |+...
T Consensus       590 ~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~s------gKq~k~FKgs~~~eG~lIKv~lDPSgiY~-atScs  661 (1080)
T KOG1408|consen  590 HTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIES------GKQVKSFKGSRDHEGDLIKVILDPSGIYL-ATSCS  661 (1080)
T ss_pred             cccccccceEEEeeeCC-CcceEEEEecccceEEEeccc------cceeeeecccccCCCceEEEEECCCccEE-EEeec
Confidence                       444455 567999999999999999999      899999986   67788999999999987 78889


Q ss_pred             CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       310 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      |+++.++|+-+++++..+.+|...|+++.|++|                  -..|++.+.||+|.||.+..
T Consensus       662 dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD------------------CkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  662 DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND------------------CKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CCceEEEEeccchhhhhhcCcchheeeeeeccc------------------chhheeecCCceEEEEECch
Confidence            999999999999999999999999999999999                  45688999999999999974

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=4.8e-25  Score=205.91  Aligned_cols=166  Identities=19%  Similarity=0.363  Sum_probs=136.8

Q ss_pred             eEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCC-----CceeeecccCcceEEEEecCCCCCEEEEEeCCC
Q 046899          189 KYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGST-----PAVKVEKAHNADIHCVDWNPHDVNLILTGSADN  262 (407)
Q Consensus       189 ~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg  262 (407)
                      .+.+|.+.|.+++|+| ++ ++|++|+.|++|++||+.+...     .....+.+|...|.+++|+|..+++|++|+.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            4678999999999999 55 7999999999999999976531     135677899999999999994457999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcc-cCCCCcC
Q 046899          263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPI-IHPAYSS  341 (407)
Q Consensus       263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~s~  341 (407)
                      .|++||+++      ++.+..+.+|...|.+++|+|++.. |++++.|++|++||+++++.+..+.+|.... ..+.|.+
T Consensus       149 tVrIWDl~t------g~~~~~l~~h~~~V~sla~spdG~l-Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~  221 (493)
T PTZ00421        149 VVNVWDVER------GKAVEVIKCHSDQITSLEWNLDGSL-LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK  221 (493)
T ss_pred             EEEEEECCC------CeEEEEEcCCCCceEEEEEECCCCE-EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence            999999998      7888999999999999999999985 5799999999999999988887777776542 2233433


Q ss_pred             cchhccccceeeeeEeeCccceeeeEE----EeeeEEEeeccc
Q 046899          342 DMLDIETKLLTSIGMHLIHGRLLVCLT----MVKVLEIWRMID  380 (407)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~i~~~~----~d~~i~iwd~~~  380 (407)
                      +                  +..|++++    .|+.|+|||+..
T Consensus       222 ~------------------~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        222 R------------------KDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             C------------------CCeEEEEecCCCCCCeEEEEeCCC
Confidence            3                  45555443    478999999973

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=9.8e-26  Score=179.84  Aligned_cols=240  Identities=19%  Similarity=0.264  Sum_probs=188.3

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      .|++.|..+...- -|..|||++.|++|+|+.++....                                          
T Consensus         9 ~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~------------------------------------------   45 (299)
T KOG1332|consen    9 QHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------   45 (299)
T ss_pred             hhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence            5888888877443 788999999999999999875421                                          


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEE-CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQF-CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                                             .+.+.++.+|.++|..++| +|.-+.+||+++.||+|.||.-.+++.........|.
T Consensus        46 -----------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~  102 (299)
T KOG1332|consen   46 -----------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS  102 (299)
T ss_pred             -----------------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence                                   1356788899999999999 4544489999999999999999988755566777899


Q ss_pred             cceEEEEecCCC-CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC---CC----------CEEE
Q 046899          240 ADIHCVDWNPHD-VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD---KS----------SVFG  305 (407)
Q Consensus       240 ~~v~~l~~~~~~-~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~----------~ll~  305 (407)
                      ..|++++|.|.+ +-.|++++.||.|.|.+.+....   .........|.-.|+++.|.|-   |.          +-|+
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv  179 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV  179 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence            999999999954 56788999999999999987421   3445566789999999999986   41          2258


Q ss_pred             EeeCCCeEEEEeCCCCC--cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccccc
Q 046899          306 SSAEDGILNIWDHEKIG--EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY  383 (407)
Q Consensus       306 s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~  383 (407)
                      ||+.|+.|+||+....+  ...++.+|...|+.+++.|.+     +..         ...|++++.||++.||...... 
T Consensus       180 SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~-----gl~---------~s~iAS~SqDg~viIwt~~~e~-  244 (299)
T KOG1332|consen  180 SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV-----GLP---------KSTIASCSQDGTVIIWTKDEEY-  244 (299)
T ss_pred             ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc-----CCC---------ceeeEEecCCCcEEEEEecCcc-
Confidence            99999999999998753  335688999999999998872     111         4579999999999999887321 


Q ss_pred             CChHHHHHHHhhcccceeEeecc
Q 046899          384 RPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                        +......+......++.+.||
T Consensus       245 --e~wk~tll~~f~~~~w~vSWS  265 (299)
T KOG1332|consen  245 --EPWKKTLLEEFPDVVWRVSWS  265 (299)
T ss_pred             --CcccccccccCCcceEEEEEe
Confidence              222333444577788888887

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=4.5e-26  Score=198.13  Aligned_cols=240  Identities=18%  Similarity=0.282  Sum_probs=204.6

Q ss_pred             CCcEEEEecccc---ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcE
Q 046899          133 DQSVVLWSIQDH---VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQE  209 (407)
Q Consensus       133 d~~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~  209 (407)
                      |+.|.+|++-..   .+.+..|...+..+........+++++.|+.+++||.++|+++..+. -...++|+.|+|++++.
T Consensus       236 D~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~  314 (503)
T KOG0282|consen  236 DGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNI  314 (503)
T ss_pred             CceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcE
Confidence            999999999763   34677777777777777778889999999999999999999999885 34578999999999899


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-CC
Q 046899          210 FCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-HS  288 (407)
Q Consensus       210 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h~  288 (407)
                      |++|+.|+.|+.||+|+++  .+..+..|-+.|..+.|-+ ++..+++.+.|++++||+.+.      ..++..+.. +.
T Consensus       315 fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~------~v~ik~i~~~~~  385 (503)
T KOG0282|consen  315 FLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRI------PVPIKNIADPEM  385 (503)
T ss_pred             EEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCC------Cccchhhcchhh
Confidence            9999999999999999999  7888889999999999999 899999999999999999998      444443322 33


Q ss_pred             CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC---CcccccccCCCc--ccCCCCcCcchhccccceeeeeEeeCccce
Q 046899          289 AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI---GEKQDYGELKYP--IIHPAYSSDMLDIETKLLTSIGMHLIHGRL  363 (407)
Q Consensus       289 ~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~--v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~  363 (407)
                      ....++..+|++.++ +.-+.|+.|.++.+...   .....+.+|..+  -..+.||||                  +..
T Consensus       386 hsmP~~~~~P~~~~~-~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD------------------G~~  446 (503)
T KOG0282|consen  386 HTMPCLTLHPNGKWF-AAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD------------------GRT  446 (503)
T ss_pred             ccCcceecCCCCCee-hhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC------------------CCe
Confidence            456789999999965 68899999999997642   334567776543  445789999                  999


Q ss_pred             eeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          364 LVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       364 i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      |++|..||.+.+||..      +..++..+++|...+..++|-|
T Consensus       447 l~SGdsdG~v~~wdwk------t~kl~~~lkah~~~ci~v~wHP  484 (503)
T KOG0282|consen  447 LCSGDSDGKVNFWDWK------TTKLVSKLKAHDQPCIGVDWHP  484 (503)
T ss_pred             EEeecCCccEEEeech------hhhhhhccccCCcceEEEEecC
Confidence            9999999999999999      8999999999999999998854

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.5e-25  Score=203.36  Aligned_cols=203  Identities=18%  Similarity=0.276  Sum_probs=163.4

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      ...||.+.|..|.|+.  .++|++++.|.+||+|++....++.                                     
T Consensus       364 ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~-------------------------------------  404 (712)
T KOG0283|consen  364 EFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLK-------------------------------------  404 (712)
T ss_pred             hhhccchhheeccccc--CCeeEeccccccEEeecCCCcceee-------------------------------------
Confidence            3458999999999996  4589999999999999998665433                                     


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA  237 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  237 (407)
                                                     .| .|.+.|+|++|+|.+.++|++|+.||+|+||++...+   +.....
T Consensus       405 -------------------------------~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~D  449 (712)
T KOG0283|consen  405 -------------------------------VF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWND  449 (712)
T ss_pred             -------------------------------EE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehh
Confidence                                           33 5999999999999887999999999999999998776   444445


Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec--CC------CCCEEEEEEcCCCCC-EEEEee
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GH------SAAVLCVQWSPDKSS-VFGSSA  308 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~h------~~~v~~v~~~~~~~~-ll~s~~  308 (407)
                      -..-|++++|.| +|+..++|+.+|.+++|+.+.      .+....+.  .|      ...|+.++|.|...- +| ..+
T Consensus       450 l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~------lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL-VTS  521 (712)
T KOG0283|consen  450 LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEG------LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL-VTS  521 (712)
T ss_pred             hhhhheeEEecc-CCceEEEEEeccEEEEEEccC------CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE-Eec
Confidence            568899999999 899999999999999999987      44443332  11      227999999986654 55 567


Q ss_pred             CCCeEEEEeCCCCCcccccccCCCc--ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          309 EDGILNIWDHEKIGEKQDYGELKYP--IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       309 ~d~~i~vwd~~~~~~~~~~~~~~~~--v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      .|..|||+|.+....+..+.+....  -....|+.|                  +.+|++++.|..|+||+...
T Consensus       522 nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D------------------gk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  522 NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD------------------GKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CCCceEEEeccchhhhhhhcccccCCcceeeeEccC------------------CCEEEEeecCceEEEEeCCC
Confidence            7999999999887888888875442  223445555                  99999999999999999853

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=3.6e-25  Score=200.86  Aligned_cols=212  Identities=17%  Similarity=0.197  Sum_probs=164.4

Q ss_pred             ccccccCCCCCCCCCCCCcCceeeE-------------------------------------eecccCEEEEEECCCCCc
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKY-------------------------------------LGHEDTVEDVQFCPSSAQ  208 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~-------------------------------------~~~~~~v~~l~~~~~~~~  208 (407)
                      .+.+.++|++|++|++..+..-..+                                     -+....+.+++.+|++ +
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-q  472 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-Q  472 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-c
Confidence            4688999999999998763221111                                     0123468899999999 8


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899          209 EFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH--DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG  286 (407)
Q Consensus       209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  286 (407)
                      .||+|...|.+++||+.+.+  ....+.+|..+|.|+.|+.-  ...+||+++.|..|.|||+...     ..++.++.+
T Consensus       473 hLAsGDr~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~  545 (1080)
T KOG1408|consen  473 HLASGDRGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDG  545 (1080)
T ss_pred             eecccCccCceEEEEehhhh--hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cchhhhhcc
Confidence            99999999999999999887  56778899999999999751  3468999999999999998653     345555555


Q ss_pred             CCCCEEEEEE-------------------------------------------------cCCCCCEEEEeeCCCeEEEEe
Q 046899          287 HSAAVLCVQW-------------------------------------------------SPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       287 h~~~v~~v~~-------------------------------------------------~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      |...|+++.|                                                 .|..+++ ++++.|..|+|||
T Consensus       546 HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v-~t~cQDrnirif~  624 (1080)
T KOG1408|consen  546 HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV-VTVCQDRNIRIFD  624 (1080)
T ss_pred             cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE-EEEecccceEEEe
Confidence            6555555554                                                 4555544 6999999999999


Q ss_pred             CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcc
Q 046899          318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFK  397 (407)
Q Consensus       318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~  397 (407)
                      ++++++.+.|.+....=              |.+.+ ..+.+.+-+|++.+.|.++.|+|+.      ++||++.+.||.
T Consensus       625 i~sgKq~k~FKgs~~~e--------------G~lIK-v~lDPSgiY~atScsdktl~~~Df~------sgEcvA~m~GHs  683 (1080)
T KOG1408|consen  625 IESGKQVKSFKGSRDHE--------------GDLIK-VILDPSGIYLATSCSDKTLCFVDFV------SGECVAQMTGHS  683 (1080)
T ss_pred             ccccceeeeecccccCC--------------CceEE-EEECCCccEEEEeecCCceEEEEec------cchhhhhhcCcc
Confidence            99999999988643210              00111 3344447899999999999999999      899999999999


Q ss_pred             cceeEeeccC
Q 046899          398 SHIFGCDKSC  407 (407)
Q Consensus       398 ~~v~~~~~s~  407 (407)
                      ..|+++.|+.
T Consensus       684 E~VTG~kF~n  693 (1080)
T KOG1408|consen  684 EAVTGVKFLN  693 (1080)
T ss_pred             hheeeeeecc
Confidence            9999999973

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.5e-25  Score=191.22  Aligned_cols=274  Identities=15%  Similarity=0.194  Sum_probs=218.6

Q ss_pred             EEEeeCCC-cEEEEeCcCCCCcccccCcCCCCCCC---------------CCcEEEEeccccccc--cccCCCCCccccc
Q 046899           99 VATHTDSP-DVLIWDVEAQPNRHAVLGAADSHPDL---------------DQSVVLWSIQDHVSA--LAAEPGSAKSTAS  160 (407)
Q Consensus        99 l~tg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~---------------d~~i~~w~~~~~~~~--~~~~~~~~~~~~~  160 (407)
                      +.+++.|. ++.+||+.++.....+.+........               ...+.+|.+......  ....|+.+...+.
T Consensus        10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s   89 (476)
T KOG0646|consen   10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS   89 (476)
T ss_pred             EeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence            33444444 48999999987665555441111111               457888888766443  3445666667777


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-------CCCCcee
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-------GSTPAVK  233 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~  233 (407)
                      ......++.++..+.+.+|.+.+|..+..+.+|-..|+|+.|+.+| .+|++||.||.|.+|++-.       .......
T Consensus        90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~  168 (476)
T KOG0646|consen   90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH  168 (476)
T ss_pred             CCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence            7777778888899999999999999999999999999999999999 8999999999999998743       1233567


Q ss_pred             eecccCcceEEEEecCC-CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899          234 VEKAHNADIHCVDWNPH-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI  312 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~  312 (407)
                      .+..|.-+|+.+...+. ....++|++.|.++++||+..      +..+.++. ...++.+++.+|-++.++ .|+.+|.
T Consensus       169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~-fp~si~av~lDpae~~~y-iGt~~G~  240 (476)
T KOG0646|consen  169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTIT-FPSSIKAVALDPAERVVY-IGTEEGK  240 (476)
T ss_pred             eeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEe-cCCcceeEEEcccccEEE-ecCCcce
Confidence            78899999999998772 246899999999999999999      88888886 467899999999999775 9999999


Q ss_pred             EEEEeCCCCC----------------cccccccCCC--cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEE
Q 046899          313 LNIWDHEKIG----------------EKQDYGELKY--PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLE  374 (407)
Q Consensus       313 i~vwd~~~~~----------------~~~~~~~~~~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~  374 (407)
                      |.+.++.+..                ....+.+|.+  +|++++.|-|                  +..+++|+.||.|.
T Consensus       241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D------------------gtlLlSGd~dg~Vc  302 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD------------------GTLLLSGDEDGKVC  302 (476)
T ss_pred             EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC------------------ccEEEeeCCCCCEE
Confidence            9999886533                2233456666  7888888777                  88999999999999


Q ss_pred             EeeccccccCChHHHHHHHhhcccceeEeec
Q 046899          375 IWRMIDLIYRPEEEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       375 iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~  405 (407)
                      |||+.      ..++++++..-++.|+.+.+
T Consensus       303 vWdi~------S~Q~iRtl~~~kgpVtnL~i  327 (476)
T KOG0646|consen  303 VWDIY------SKQCIRTLQTSKGPVTNLQI  327 (476)
T ss_pred             EEecc------hHHHHHHHhhhccccceeEe
Confidence            99999      89999999988899998876

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-25  Score=205.86  Aligned_cols=220  Identities=21%  Similarity=0.431  Sum_probs=179.4

Q ss_pred             EEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899           41 SCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ  116 (407)
Q Consensus        41 s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  116 (407)
                      .+.|..    .++|.+..+.+.+|   +++...+  .........|+..++++.|++...++|++|+.||+|++||++..
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vW---dlnk~~r--nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVW---DLNKSIR--NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEE---ecCcccc--chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence            345653    48899999999999   3333212  22333445799999999999999999999999999999999865


Q ss_pred             CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC
Q 046899          117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT  196 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~  196 (407)
                      ....                                                                    ++.+....
T Consensus       167 ~S~~--------------------------------------------------------------------t~~~nSES  178 (839)
T KOG0269|consen  167 KSKS--------------------------------------------------------------------TFRSNSES  178 (839)
T ss_pred             cccc--------------------------------------------------------------------cccccchh
Confidence            4322                                                                    23345678


Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG  276 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~  276 (407)
                      |..++|+|..++.|+++.+.|.+++||+|.... +...+.+|.++|.|+.|+| ++.+|||||.|+.|+|||+....   
T Consensus       179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~---  253 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR---  253 (839)
T ss_pred             hhceeeccCCCceEEEecCCceEEEeeccCchh-HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC---
Confidence            999999998779999999999999999998875 5778889999999999999 99999999999999999998744   


Q ss_pred             CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCCCCc-ccccccCCCcccCCCCc
Q 046899          277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEKIGE-KQDYGELKYPIIHPAYS  340 (407)
Q Consensus       277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s  340 (407)
                       ..++.++. ...+|.+|+|-|..++.||+++.  |-.|+|||++..-. ..++..|...++.++|-
T Consensus       254 -~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  254 -AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD  318 (839)
T ss_pred             -ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence             45666665 36799999999999999998874  78899999997544 36788888888888873

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=178.11  Aligned_cols=276  Identities=20%  Similarity=0.334  Sum_probs=190.1

Q ss_pred             ecccCCCeeEEEEeecccccCccceEEEEeec------------ccCcccCCcceeeEEEeeCCCceEEEEEeCCC----
Q 046899           32 NHNLVWPSLSCRWGPQLEQATYKNRQRLYLSE------------QFNEEARSPFVKKFKTIIHPGEVNRIRELPQN----   95 (407)
Q Consensus        32 ~~~~~~p~~s~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----   95 (407)
                      ....+||-+...|...     .+...|+-+++            +++++.  ........+.|.-+++.+.|.|+.    
T Consensus        40 ~Y~ap~~lya~~Ws~~-----~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s--~e~~~~a~fd~~YP~tK~~wiPd~~g~~  112 (364)
T KOG0290|consen   40 TYNAPWPLYAMNWSVR-----PDKKFRLAVGSFIEEYNNKVQIVQLDEDS--GELVEDANFDHPYPVTKLMWIPDSKGVY  112 (364)
T ss_pred             EecCCCceeeeccccC-----CCcceeEEEeeeccccCCeeEEEEEccCC--CceeccCCCCCCCCccceEecCCccccC
Confidence            3467888888888632     22223333333            233222  122233335799999999999943    


Q ss_pred             CeEEEEeeCCCcEEEEeCcCCCCcccc----cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc
Q 046899           96 SKIVATHTDSPDVLIWDVEAQPNRHAV----LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS  171 (407)
Q Consensus        96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (407)
                      .++|||.+.  .+|+|.+...+.....    ..+....-  ..-+.-+|-+                  -.....+.+.+
T Consensus       113 pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~--~aPlTSFDWn------------------e~dp~~igtSS  170 (364)
T KOG0290|consen  113 PDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEF--CAPLTSFDWN------------------EVDPNLIGTSS  170 (364)
T ss_pred             cchhhcccC--eEEEEeccCcCCceehhhhhccCccccc--CCcccccccc------------------cCCcceeEeec
Confidence            468888765  8999999854221111    11100000  0011111111                  11124566788


Q ss_pred             CCCCCCCCCCCCcCc---eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-CcceEEEEe
Q 046899          172 GGNGDKPLESPSIGA---RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NADIHCVDW  247 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~  247 (407)
                      -|.++.|||++++..   ...+.+|..+|..|+|...+...||+.|.||.||+||+|......+.-.... ..+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            888999999988643   5667899999999999998878999999999999999998875433332233 568899999


Q ss_pred             cCCCCCEEEEEeCCC-cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc---
Q 046899          248 NPHDVNLILTGSADN-SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE---  323 (407)
Q Consensus       248 ~~~~~~~l~tg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~---  323 (407)
                      ++++.+++||-..|. .|.|.|+|.+     ..++.++++|.+.|+.++|.|.....++|++.|.++-+||+...-.   
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P-----~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~  325 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVP-----CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG  325 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCC-----CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence            999999999987764 7999999997     6899999999999999999999887789999999999999987533   


Q ss_pred             ---ccccccCCCcccCCCCcCc
Q 046899          324 ---KQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       324 ---~~~~~~~~~~v~~~~~s~d  342 (407)
                         +..+. ..+.|..+.|++-
T Consensus       326 ~dPilay~-a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  326 EDPILAYT-AGGEVNQIQWSSS  346 (364)
T ss_pred             CCchhhhh-ccceeeeeeeccc
Confidence               11122 3445666666543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.2e-24  Score=178.28  Aligned_cols=283  Identities=16%  Similarity=0.204  Sum_probs=192.7

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc--cccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc-
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH--AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS-  157 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~-  157 (407)
                      .|.+.|+++...+..++++++|+.||.|.|||++......  -+..-         .+.+        .-..+++...+ 
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---------~~c~--------v~~~h~~~Hky~  103 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---------HKCI--------VAKQHENGHKYA  103 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh---------eeee--------ccccCCccceee
Confidence            5999999999999999999999999999999998654111  00000         0000        00001111000 


Q ss_pred             ---cccCCC-CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCCCCc
Q 046899          158 ---TASGGA-NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA--QEFCSVGDDSCLILWDARSGSTPA  231 (407)
Q Consensus       158 ---~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~  231 (407)
                         ..--++ ...+.+++.|.++++||.++.+....++ -++.|..-+++|-..  .++|+|..|-.|++-|+.++.  .
T Consensus       104 iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--~  180 (397)
T KOG4283|consen  104 ISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--F  180 (397)
T ss_pred             eeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--c
Confidence               000111 1246778899999999999988877775 567888889988531  578888899999999999999  7


Q ss_pred             eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC--------CCC-CCceeeecCCCCCEEEEEEcCCCCC
Q 046899          232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS--------DGV-GSPIHKFEGHSAAVLCVQWSPDKSS  302 (407)
Q Consensus       232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--------~~~-~~~~~~~~~h~~~v~~v~~~~~~~~  302 (407)
                      ..++.+|.+.|.++.|+|...-.|++|+.||.|++||+|.-..        ++. ...+.+-.+|.+.|+.++|+.++.+
T Consensus       181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~  260 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY  260 (397)
T ss_pred             eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh
Confidence            8899999999999999996667789999999999999987420        100 1122234468889999999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCCCccccccc--CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          303 VFGSSAEDGILNIWDHEKIGEKQDYGE--LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       303 ll~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      + ++++.|..+++|+..+++.-..-.+  ....-+++.+               ..-.+|...++-.-.++++.++.+- 
T Consensus       261 l-~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~---------------~~~~~~s~vfv~~p~~~~lall~~~-  323 (397)
T KOG4283|consen  261 L-ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAV---------------HIQSMDSDVFVLFPNDGSLALLNLL-  323 (397)
T ss_pred             h-hhccCccceEEeecccCcccccccccccccccccceE---------------EEeecccceEEEEecCCeEEEEEcc-
Confidence            8 5999999999999998766443222  1111122222               1113444444444444666666666 


Q ss_pred             cccCChHHHHHHHhhcccceeEeec
Q 046899          381 LIYRPEEEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       381 ~~~~~~~~~~~~~~~h~~~v~~~~~  405 (407)
                           +++.+..+.+|-..|.|.+|
T Consensus       324 -----sgs~ir~l~~h~k~i~c~~~  343 (397)
T KOG4283|consen  324 -----EGSFVRRLSTHLKRINCAAY  343 (397)
T ss_pred             -----CceEEEeeecccceeeEEee
Confidence                 56666666666656666554

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.7e-24  Score=203.20  Aligned_cols=190  Identities=13%  Similarity=0.199  Sum_probs=149.3

Q ss_pred             ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC------CceeeecccCcceE
Q 046899          170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST------PAVKVEKAHNADIH  243 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~  243 (407)
                      |+..+.+++|+......+..+.+|...|.+++|+|+.+++|++|+.|++|++||+.++..      .....+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            344556666766666677888999999999999997448999999999999999986431      12345678999999


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      +++|+|....+|++++.|+.|++||+++      ++.+..+. |...|.+++|+|+|.. |++++.|+.|+|||+++++.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~t------g~~~~~i~-~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN------EKRAFQIN-MPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCC------CcEEEEEe-cCCcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcE
Confidence            9999994334568999999999999998      67777775 5678999999999995 57888999999999999988


Q ss_pred             ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee----eEEEeeccc
Q 046899          324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK----VLEIWRMID  380 (407)
Q Consensus       324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~----~i~iwd~~~  380 (407)
                      +..+.+|.+.+....+..             ..+.+++.+|++++.|+    +|+|||+..
T Consensus       202 i~tl~gH~g~~~s~~v~~-------------~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWI-------------DGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEEecccCCceeEEEEe-------------eeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            888888877543322210             11234577888888775    799999973

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.8e-24  Score=176.80  Aligned_cols=247  Identities=16%  Similarity=0.217  Sum_probs=191.9

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      .+....|.+.|++++.   ++.++|+|+.|-+|+|||+.+......+..|...+..     ..++..             
T Consensus        36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsita-----L~F~~~-------------   94 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITA-----LKFYPP-------------   94 (362)
T ss_pred             cccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEE-----EEecCC-------------
Confidence            3444569999999996   5679999999999999999999888887777544211     111110             


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  235 (407)
                            .-.+.+++++.||.|.+|+......+..+++|.+.|+.++.+|.+ .+-++.+.|+.+++||+-.++......+
T Consensus        95 ------~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L  167 (362)
T KOG0294|consen   95 ------LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNL  167 (362)
T ss_pred             ------cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeecc
Confidence                  001368899999999999999999999999999999999999999 7888999999999999998884333332


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                         ......+.|+| .|.+|+.++.+ .|-+|.+..      .....++. ....+.++.|...+. | ++|+.|+.|++
T Consensus       168 ---~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~------A~v~~~i~-~~~r~l~~~~l~~~~-L-~vG~d~~~i~~  233 (362)
T KOG0294|consen  168 ---KNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDN------ASVFREIE-NPKRILCATFLDGSE-L-LVGGDNEWISL  233 (362)
T ss_pred             ---CCcceeeEEcC-CCCEEEEEecc-EEEEEeccc------HhHhhhhh-ccccceeeeecCCce-E-EEecCCceEEE
Confidence               23334599999 78888877755 588999987      44444444 235688888875554 5 59999999999


Q ss_pred             EeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          316 WDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       316 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      ||......+..+.+|...|-++.+                .....+.+|++.|.||.|+|||+..
T Consensus       234 ~D~ds~~~~~~~~AH~~RVK~i~~----------------~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  234 KDTDSDTPLTEFLAHENRVKDIAS----------------YTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             eccCCCccceeeecchhheeeeEE----------------EecCCceEEEEeccCceEEEEEccc
Confidence            999998888889999988777654                1112256899999999999999973

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.3e-25  Score=198.45  Aligned_cols=317  Identities=17%  Similarity=0.201  Sum_probs=230.8

Q ss_pred             cccccCccceEEEEeecccCcccCCccee-eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC--CCccccc
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVK-KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ--PNRHAVL  123 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~--~~~~~~~  123 (407)
                      .+.|++.|+.+++|..+   .....|... ..+.-.|.+-|+.+.... +++.|++++.|-+|++|+....  -+...+.
T Consensus        39 yLfTgGRDg~i~~W~~~---~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVT---QDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             eEEecCCCceEEEeccc---cccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            48899999999999443   333322222 333336999999999776 8889999999999999999887  4666666


Q ss_pred             CcCCCCCCC---------------CCcEEEEecccccc------------ccc-cCCCCCcccccCCCCCccccccCCCC
Q 046899          124 GAADSHPDL---------------DQSVVLWSIQDHVS------------ALA-AEPGSAKSTASGGANSKNASKSGGNG  175 (407)
Q Consensus       124 ~~~~~~~~~---------------d~~i~~w~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (407)
                      .|.+.+.++               |+.|.+||++.+..            .+. ++..++...+.......+++|+..+.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            666555443               99999999997622            111 33344555666666678899999999


Q ss_pred             CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899          176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI  255 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  255 (407)
                      +++||..+++.+..+++|+..|.++..+++| ..+++++.||+|++||++..+  ++.++..|...|+++..+| +-..+
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr--Cl~T~~vH~e~VWaL~~~~-sf~~v  270 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR--CLATYIVHKEGVWALQSSP-SFTHV  270 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc--eeeeEEeccCceEEEeeCC-CcceE
Confidence            9999999999999999999999999999999 889999999999999999888  8899999999999999999 89999


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC-----
Q 046899          256 LTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL-----  330 (407)
Q Consensus       256 ~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~-----  330 (407)
                      ++|+.||.|..=|++++.     +....++ .+.+|..+..+.+...+- ++..|+.|+-|-.+..-.+......     
T Consensus       271 YsG~rd~~i~~Tdl~n~~-----~~tlick-~daPv~~l~~~~~~~~~W-vtTtds~I~rW~~~~~~~l~~s~~~~~~~T  343 (735)
T KOG0308|consen  271 YSGGRDGNIYRTDLRNPA-----KSTLICK-EDAPVLKLHLHEHDNSVW-VTTTDSSIKRWKLEPDIALSVSGDLDFFST  343 (735)
T ss_pred             EecCCCCcEEecccCCch-----hheEeec-CCCchhhhhhccccCCce-eeeccccceecCCccccccccCCCCCcccc
Confidence            999999999999999842     3333333 567888888886555554 5677999999987754333222211     


Q ss_pred             --CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          331 --KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       331 --~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                        ..++......|+. -++-|.--......+....|++=-..|.+.+||+-
T Consensus       344 ~~~~~~~~~~~tp~~-vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl  393 (735)
T KOG0308|consen  344 DSNNHSCDLTNTPDS-VIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDIL  393 (735)
T ss_pred             cCCCccccccCCCce-eccCchhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence              1111122222321 00000000001122234567788888999999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=4.7e-26  Score=188.77  Aligned_cols=179  Identities=18%  Similarity=0.382  Sum_probs=158.8

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      +....+.|..|+|+| ++|++|+-||.|.+||.-+++..      ....+.-+..+|.|++|+. |..++|+|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEE
Confidence            455678899999999 89999999999999999888621      1223445778999999999 999999999999999


Q ss_pred             EEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcch
Q 046899          266 MFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDML  344 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~  344 (407)
                      +|.+++      +.+++.|. +|...|+++.|+.|+.+++ +++.|.++|+--+++++.+..+.+|...|+.+.|++|  
T Consensus       289 vWri~t------G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d--  359 (508)
T KOG0275|consen  289 VWRIET------GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD--  359 (508)
T ss_pred             EEEEec------chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCC--
Confidence            999999      99999997 7999999999999999886 9999999999999999999999999999999999998  


Q ss_pred             hccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhc--ccceeEe
Q 046899          345 DIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKF--KSHIFGC  403 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~~  403 (407)
                                      +..|++++.||+|+||+..      +.+|+.+++.-  ...|++|
T Consensus       360 ----------------G~~iisaSsDgtvkvW~~K------tteC~~Tfk~~~~d~~vnsv  398 (508)
T KOG0275|consen  360 ----------------GHHIISASSDGTVKVWHGK------TTECLSTFKPLGTDYPVNSV  398 (508)
T ss_pred             ----------------CCeEEEecCCccEEEecCc------chhhhhhccCCCCcccceeE
Confidence                            8899999999999999999      89999998743  3344443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.7e-26  Score=208.46  Aligned_cols=202  Identities=19%  Similarity=0.280  Sum_probs=177.9

Q ss_pred             cCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899          171 SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH  250 (407)
Q Consensus       171 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~  250 (407)
                      +.+-.+.+|.+.....+..+.+|+.+|.++.|++.. .++++|+.+|+|++||+....  .+.++.+|...+.++.|+| 
T Consensus        47 g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--~vrtLtgh~~~~~sv~f~P-  122 (825)
T KOG0267|consen   47 GEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--IVRTLTGHLLNITSVDFHP-  122 (825)
T ss_pred             CCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--hhhhhhccccCcceeeecc-
Confidence            333344444444444555678999999999999988 899999999999999999888  7889999999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL  330 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  330 (407)
                      -+.++|.|+.|+.+++||.+.      ..+.+.+.+|...|..++|+|+|+++ ++|++|.++++||+..++....|..|
T Consensus       123 ~~~~~a~gStdtd~~iwD~Rk------~Gc~~~~~s~~~vv~~l~lsP~Gr~v-~~g~ed~tvki~d~~agk~~~ef~~~  195 (825)
T KOG0267|consen  123 YGEFFASGSTDTDLKIWDIRK------KGCSHTYKSHTRVVDVLRLSPDGRWV-ASGGEDNTVKIWDLTAGKLSKEFKSH  195 (825)
T ss_pred             ceEEeccccccccceehhhhc------cCceeeecCCcceeEEEeecCCCcee-eccCCcceeeeecccccccccccccc
Confidence            788999999999999999998      78999999999999999999999976 79999999999999999999999999


Q ss_pred             CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          331 KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       331 ~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      ...+..+.|.|.                  .-.+++|+.|.+|++||+.      +.+.+....+....|.+++|++
T Consensus       196 e~~v~sle~hp~------------------e~Lla~Gs~d~tv~f~dle------tfe~I~s~~~~~~~v~~~~fn~  248 (825)
T KOG0267|consen  196 EGKVQSLEFHPL------------------EVLLAPGSSDRTVRFWDLE------TFEVISSGKPETDGVRSLAFNP  248 (825)
T ss_pred             cccccccccCch------------------hhhhccCCCCceeeeeccc------eeEEeeccCCccCCceeeeecC
Confidence            999999888664                  6778899999999999998      7788888888888999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3e-24  Score=176.44  Aligned_cols=260  Identities=17%  Similarity=0.184  Sum_probs=192.9

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC-CCcc-cccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ-PNRH-AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~-~~~~-~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      .-.+.|.+|+|+|+...+++.|+.||+||+|+++.. .... ....+...                          +...
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~P--------------------------vL~v   78 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGP--------------------------VLDV   78 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCC--------------------------eEEE
Confidence            356789999999988889999999999999999863 2221 11112111                          1111


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA-QEFCSVGDDSCLILWDARSGSTPAVKVEKA  237 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  237 (407)
                      ......+..++++.|+.+++||+.+++ +..+..|.++|.++.|-+... ..|++||.|.+|+.||+|+..  .+..+ .
T Consensus        79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~--pv~t~-~  154 (347)
T KOG0647|consen   79 CWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN--PVATL-Q  154 (347)
T ss_pred             EEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC--eeeee-e
Confidence            122223557789999999999999995 456668999999999987551 379999999999999999877  34443 4


Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC----CCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      ..+.+++++.-   ..+++.+..+..|.+|+++++.        .+++.    -+-.++||+..++... +|.|+-.|.+
T Consensus       155 LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~--------te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv  222 (347)
T KOG0647|consen  155 LPERVYAADVL---YPMAVVATAERHIAVYNLENPP--------TEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRV  222 (347)
T ss_pred             ccceeeehhcc---CceeEEEecCCcEEEEEcCCCc--------chhhhhcCcccceeeEEEEEecCCc-eEeeeecceE
Confidence            57778888763   4688888999999999998732        12222    2346899999988874 4799999999


Q ss_pred             EEEeCCCCCcc--cccccCCC---------cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc
Q 046899          314 NIWDHEKIGEK--QDYGELKY---------PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI  382 (407)
Q Consensus       314 ~vwd~~~~~~~--~~~~~~~~---------~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~  382 (407)
                      .+-.+..+...  -+|..|+.         +|.+++|.|.                  .+.+++.+.||++.+||-.   
T Consensus       223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~------------------hgtlvTaGsDGtf~FWDkd---  281 (347)
T KOG0647|consen  223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV------------------HGTLVTAGSDGTFSFWDKD---  281 (347)
T ss_pred             EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc------------------cceEEEecCCceEEEecch---
Confidence            99999876332  33444442         2444455443                  5678888999999999998   


Q ss_pred             cCChHHHHHHHhhcccceeEeecc
Q 046899          383 YRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       383 ~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                         ....++..+.|...|+|.+|+
T Consensus       282 ---ar~kLk~s~~~~qpItcc~fn  302 (347)
T KOG0647|consen  282 ---ARTKLKTSETHPQPITCCSFN  302 (347)
T ss_pred             ---hhhhhhccCcCCCccceeEec
Confidence               788999999999999999986

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=4.2e-24  Score=193.46  Aligned_cols=261  Identities=15%  Similarity=0.183  Sum_probs=202.7

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEE-EEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNR-IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      +.+++.|++.++|.-.      ...........+|.+-|.. ++|.+.++-.|++|+.|++|.+|..........+.+|.
T Consensus        28 i~s~sRd~t~~vw~~~------~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~  101 (745)
T KOG0301|consen   28 IISGSRDGTVKVWAKK------GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK  101 (745)
T ss_pred             EeecCCCCceeeeecc------CcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc
Confidence            6788889999999221      1222223344468888888 88887566679999999999999999999999998886


Q ss_pred             CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC
Q 046899          127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS  206 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~  206 (407)
                      ..+.++       +                   .+... .+++++-|.+.++|...  ++...+.+|+..|.+++.-|++
T Consensus       102 snVC~l-------s-------------------~~~~~-~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~  152 (745)
T KOG0301|consen  102 SNVCSL-------S-------------------IGEDG-TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN  152 (745)
T ss_pred             cceeee-------e-------------------cCCcC-ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC
Confidence            654321       1                   11111 25778888899999654  4556689999999999999987


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899          207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG  286 (407)
Q Consensus       207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  286 (407)
                        .++||+.|.+|++|.-  ++  ..+++.+|.+.|+.+++-+ + ..|++++.||.|+.|++.       ++.+.++.+
T Consensus       153 --~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~-------ge~l~~~~g  217 (745)
T KOG0301|consen  153 --TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLD-------GEVLLEMHG  217 (745)
T ss_pred             --cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEec-C-CCeEeecCCceEEEEecc-------Cceeeeeec
Confidence              7999999999999986  34  5788899999999999987 3 568899999999999994       799999999


Q ss_pred             CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899          287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC  366 (407)
Q Consensus       287 h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~  366 (407)
                      |+.-|.++....++. +++|++.|+++++|+..  .+.+.+.-....++++.+   +                .++.|++
T Consensus       218 htn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~---L----------------~NgDIvv  275 (745)
T KOG0301|consen  218 HTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV---L----------------LNGDIVV  275 (745)
T ss_pred             cceEEEEEEecCCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEE---e----------------eCCCEEE
Confidence            999999999666666 45799999999999988  444554443444444443   1                1567999


Q ss_pred             EEEeeeEEEeeccc
Q 046899          367 LTMVKVLEIWRMID  380 (407)
Q Consensus       367 ~~~d~~i~iwd~~~  380 (407)
                      |+.||.||||...+
T Consensus       276 g~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  276 GGSDGRVRVFTVDK  289 (745)
T ss_pred             eccCceEEEEEecc
Confidence            99999999998864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=1.4e-24  Score=177.23  Aligned_cols=248  Identities=20%  Similarity=0.330  Sum_probs=182.0

Q ss_pred             eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCC-------cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccc
Q 046899           74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSP-------DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVS  146 (407)
Q Consensus        74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~  146 (407)
                      +....+..|.++|+.|+-+|.+.++|+|+..+-       .+.||.+.......                          
T Consensus        54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--------------------------  107 (370)
T KOG1007|consen   54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--------------------------  107 (370)
T ss_pred             hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--------------------------
Confidence            334445568899999999999999999986531       14455544321110                          


Q ss_pred             ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899          147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR  225 (407)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  225 (407)
                                                       +..+.+++..+. .+-+.|.|+.|.|++ ..+++-. |..|.+|++.
T Consensus       108 ---------------------------------~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~  152 (370)
T KOG1007|consen  108 ---------------------------------NSSTLECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLD  152 (370)
T ss_pred             ---------------------------------ccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcc
Confidence                                             011223344443 355689999999988 5666654 8999999998


Q ss_pred             CCCCCceee-----ecccCcceEEEEecC-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcC
Q 046899          226 SGSTPAVKV-----EKAHNADIHCVDWNP-HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSP  298 (407)
Q Consensus       226 ~~~~~~~~~-----~~~~~~~v~~l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~  298 (407)
                      ++... ...     ..++....++-+|+| .+++.+++.+ |+++..||+|+      ..+...+. +|...|.++.|.|
T Consensus       153 ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT------~~~~~sI~dAHgq~vrdlDfNp  224 (370)
T KOG1007|consen  153 ESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRT------MKKNNSIEDAHGQRVRDLDFNP  224 (370)
T ss_pred             cCcch-heeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccc------hhhhcchhhhhcceeeeccCCC
Confidence            87631 111     123456678889999 6788887755 89999999998      55665554 5888999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCCCCCc-ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899          299 DKSSVFGSSAEDGILNIWDHEKIGE-KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR  377 (407)
Q Consensus       299 ~~~~ll~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd  377 (407)
                      +..++||||+.||.|++||+++.+. ++++++|...|+++.|+|-                 |...|++|+.|..|.+|-
T Consensus       225 nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~-----------------hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  225 NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE-----------------HDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc-----------------cceEEEecCCCceeEEEe
Confidence            9999999999999999999997655 5788999999999999886                 588899999999999996


Q ss_pred             ccccc---------------cCChHH--------HHHHHhhcccceeEeeccC
Q 046899          378 MIDLI---------------YRPEEE--------VLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       378 ~~~~~---------------~~~~~~--------~~~~~~~h~~~v~~~~~s~  407 (407)
                      .....               .....+        .++++..|.+.|++++||.
T Consensus       288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs  340 (370)
T KOG1007|consen  288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS  340 (370)
T ss_pred             ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence            53211               111111        2457889999999999984

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1e-23  Score=194.67  Aligned_cols=181  Identities=18%  Similarity=0.234  Sum_probs=157.4

Q ss_pred             cccccCCCCCCCCCCCCcCceeeE---eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899          167 NASKSGGNGDKPLESPSIGARGKY---LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH  243 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  243 (407)
                      .+.|.+.|.|.+++++++-....+   ..|.++|+.++....+ +.+++++.+|.+++||+.+..  ....+ .-...+.
T Consensus       463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~--l~~~l-~l~~~~~  538 (910)
T KOG1539|consen  463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKV--LKKSL-RLGSSIT  538 (910)
T ss_pred             EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcc--eeeee-ccCCCcc
Confidence            455888999999999999988888   5799999999998888 789999999999999998776  33333 3456788


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      ++..+. ....++++..|-.|+++|+.+      .+.++.|.+|.+.|++++|||||++| ++++.|++||+||+.++..
T Consensus       539 ~iv~hr-~s~l~a~~~ddf~I~vvD~~t------~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  539 GIVYHR-VSDLLAIALDDFSIRVVDVVT------RKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             eeeeee-hhhhhhhhcCceeEEEEEchh------hhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEeccCcce
Confidence            888888 788999999999999999999      88999999999999999999999987 5999999999999999776


Q ss_pred             ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee-eEEEeec
Q 046899          324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK-VLEIWRM  378 (407)
Q Consensus       324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~i~iwd~  378 (407)
                      +-.+ .-+.+++.+.|||+                  ++++++...|. .|++|-=
T Consensus       611 ID~~-~vd~~~~sls~SPn------------------gD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  611 IDGL-LVDSPCTSLSFSPN------------------GDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             eeeE-ecCCcceeeEECCC------------------CCEEEEEEecCceEEEEEc
Confidence            6544 34678889999998                  88999998884 8999953

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=6.7e-25  Score=198.02  Aligned_cols=211  Identities=18%  Similarity=0.287  Sum_probs=182.0

Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                      ......++.|..+|.+.|||....+.+..+.+ |...|.+++|+.   ..+.+|+.|+.|..+|++..+.. ...+.+|.
T Consensus       226 s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~  301 (484)
T KOG0305|consen  226 SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHV-VSTLQGHR  301 (484)
T ss_pred             CCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhh-hhhhhccc
Confidence            33345689999999999999999999999998 999999999993   67999999999999999998742 22588999


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee--CCCeEEEEe
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGILNIWD  317 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~--~d~~i~vwd  317 (407)
                      ..|..+.|++ +++++|+|+.|+.+.|||...      ..++..+..|.+.|..++|+|-...|||+|+  .|+.|++||
T Consensus       302 qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  302 QEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS------PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             ceeeeeEECC-CCCeeccCCCccceEeccCCC------ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence            9999999999 999999999999999999977      7899999999999999999999888999986  599999999


Q ss_pred             CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee--EEEeeeEEEeeccccccCChHHHHHHHhh
Q 046899          318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC--LTMVKVLEIWRMIDLIYRPEEEVLAELDK  395 (407)
Q Consensus       318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  395 (407)
                      +.++..+..... ...|..+.|++.                  ...|++  |..+..|.||+..      +-.++..+.|
T Consensus       375 ~~~g~~i~~vdt-gsQVcsL~Wsk~------------------~kEi~sthG~s~n~i~lw~~p------s~~~~~~l~g  429 (484)
T KOG0305|consen  375 TNTGARIDSVDT-GSQVCSLIWSKK------------------YKELLSTHGYSENQITLWKYP------SMKLVAELLG  429 (484)
T ss_pred             cCCCcEeccccc-CCceeeEEEcCC------------------CCEEEEecCCCCCcEEEEecc------ccceeeeecC
Confidence            999888777665 445777777766                  333433  2334499999998      6788899999


Q ss_pred             cccceeEeeccC
Q 046899          396 FKSHIFGCDKSC  407 (407)
Q Consensus       396 h~~~v~~~~~s~  407 (407)
                      |...|..+++||
T Consensus       430 H~~RVl~la~SP  441 (484)
T KOG0305|consen  430 HTSRVLYLALSP  441 (484)
T ss_pred             CcceeEEEEECC
Confidence            999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=2.3e-24  Score=188.12  Aligned_cols=267  Identities=15%  Similarity=0.168  Sum_probs=209.0

Q ss_pred             cEEEEeCcCCCCcccccCcCCCCCCC-----------------CCcEEEEeccccccccc---cC-CCCCcccccCCCCC
Q 046899          107 DVLIWDVEAQPNRHAVLGAADSHPDL-----------------DQSVVLWSIQDHVSALA---AE-PGSAKSTASGGANS  165 (407)
Q Consensus       107 ~i~vwd~~~~~~~~~~~~~~~~~~~~-----------------d~~i~~w~~~~~~~~~~---~~-~~~~~~~~~~~~~~  165 (407)
                      .+++||+...+....+..+.......                 |..+.+|.-......+.   .. .+...++......-
T Consensus        13 ~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~   92 (673)
T KOG4378|consen   13 KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSL   92 (673)
T ss_pred             ceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcce
Confidence            79999998876665555443332211                 77778886655411111   11 11122333344446


Q ss_pred             ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec-ccCcceEE
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-AHNADIHC  244 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~  244 (407)
                      ++++++..+.++|||++...+.+.+++|+..|+++.++-.+ .++|+++..|-|.|..+.++..  ...+. +....|.-
T Consensus        93 y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~--tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   93 YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQK--TTTFTIDSGQSVRL  169 (673)
T ss_pred             eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCcc--ccceecCCCCeEEE
Confidence            78889999999999999877888899999999999999888 7999999999999999998873  33333 23456678


Q ss_pred             EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      +.|+|....+|.+++++|.|.+||+..      ..+...+ +.|..+...|+|+|....||++.+.|..|.+||.+....
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g------~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s  243 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQG------MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS  243 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccC------CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc
Confidence            999996667788999999999999998      5555544 569999999999999999999999999999999997444


Q ss_pred             ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEe
Q 046899          324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC  403 (407)
Q Consensus       324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~  403 (407)
                      ...+ ..+.|.+.++|+++                  +.++++|+..|.|..||++.     ..+++..+..|+..|++|
T Consensus       244 ~~~l-~y~~Plstvaf~~~------------------G~~L~aG~s~G~~i~YD~R~-----~k~Pv~v~sah~~sVt~v  299 (673)
T KOG4378|consen  244 TDRL-TYSHPLSTVAFSEC------------------GTYLCAGNSKGELIAYDMRS-----TKAPVAVRSAHDASVTRV  299 (673)
T ss_pred             ccee-eecCCcceeeecCC------------------ceEEEeecCCceEEEEeccc-----CCCCceEeeecccceeEE
Confidence            3333 34678889999888                  89999999999999999974     778999999999999999


Q ss_pred             ecc
Q 046899          404 DKS  406 (407)
Q Consensus       404 ~~s  406 (407)
                      +|-
T Consensus       300 afq  302 (673)
T KOG4378|consen  300 AFQ  302 (673)
T ss_pred             Eee
Confidence            994

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=3.7e-24  Score=187.59  Aligned_cols=311  Identities=13%  Similarity=0.165  Sum_probs=211.9

Q ss_pred             hccCceEEEeeeecccCCCeeEEEEee---cccccCccceEEEEeecccC-cccCCcceeeEEEeeCCCceEEEEEeCCC
Q 046899           20 KSLVPVLYDWLANHNLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFN-EEARSPFVKKFKTIIHPGEVNRIRELPQN   95 (407)
Q Consensus        20 ~~~~~~~y~~l~~~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~   95 (407)
                      .+.+|+--+..+.|... -......-|   .+++|++|..+++|   +|. .+...+.+..+. ......|+++.|++ .
T Consensus       152 ~~~IP~shEi~l~hgtk-~Vsal~~Dp~GaR~~sGs~Dy~v~~w---Df~gMdas~~~fr~l~-P~E~h~i~sl~ys~-T  225 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHGTK-IVSALAVDPSGARFVSGSLDYTVKFW---DFQGMDASMRSFRQLQ-PCETHQINSLQYSV-T  225 (641)
T ss_pred             hhcCCccceEeccCCce-EEEEeeecCCCceeeeccccceEEEE---ecccccccchhhhccC-cccccccceeeecC-C
Confidence            45577665544444432 111223333   58899999999999   443 222222222221 12446899999999 6


Q ss_pred             CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC----CCcccccc
Q 046899           96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA----NSKNASKS  171 (407)
Q Consensus        96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  171 (407)
                      ++.|++.+.....+|+|-...+......+-.+          |-|+..       ..+.++.+..|.+    ...+++.+
T Consensus       226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQY----------I~Dm~n-------TKGHia~lt~g~whP~~k~~FlT~s  288 (641)
T KOG0772|consen  226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQY----------IRDMYN-------TKGHIAELTCGCWHPDNKEEFLTCS  288 (641)
T ss_pred             CCeEEEEecCcceeEEccCCceeeeeeccchh----------hhhhhc-------cCCceeeeeccccccCcccceEEec
Confidence            66666666667999999876554444333211          111111       1111111112222    24578899


Q ss_pred             CCCCCCCCCCCCcCceee-Ee-----ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-CCceeeecccCc--ce
Q 046899          172 GGNGDKPLESPSIGARGK-YL-----GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS-TPAVKVEKAHNA--DI  242 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~~~~-~~-----~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~--~v  242 (407)
                      .||++++||.+..+.... ++     +..-+++.++|+|++ .++|+|..||.|.+||.+... .+....-.+|..  .|
T Consensus       289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I  367 (641)
T KOG0772|consen  289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI  367 (641)
T ss_pred             CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCce
Confidence            999999999976554333 32     123478999999999 789999999999999986544 234455567876  99


Q ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--CCCEEEEEEcCCCCCEEEEeeC------CCeEE
Q 046899          243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--SAAVLCVQWSPDKSSVFGSSAE------DGILN  314 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~ll~s~~~------d~~i~  314 (407)
                      +||.|++ +|++|++-+.|+++++||+|.+     .+++.+..+-  .-+-+..+|||+.+. ++||..      .|++.
T Consensus       368 tsi~FS~-dg~~LlSRg~D~tLKvWDLrq~-----kkpL~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS~~~~~~~g~L~  440 (641)
T KOG0772|consen  368 TSISFSY-DGNYLLSRGFDDTLKVWDLRQF-----KKPLNVRTGLPTPFPGTDCCFSPDDKL-ILTGTSAPNGMTAGTLF  440 (641)
T ss_pred             eEEEecc-ccchhhhccCCCceeeeecccc-----ccchhhhcCCCccCCCCccccCCCceE-EEecccccCCCCCceEE
Confidence            9999999 9999999999999999999996     3677666552  235678899999994 458753      57899


Q ss_pred             EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe-ecc
Q 046899          315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW-RMI  379 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw-d~~  379 (407)
                      +||..+...+..+......|..+.|.|.                  -+.|..|+.||+++|| |-+
T Consensus       441 f~d~~t~d~v~ki~i~~aSvv~~~Whpk------------------LNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  441 FFDRMTLDTVYKIDISTASVVRCLWHPK------------------LNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             EEeccceeeEEEecCCCceEEEEeecch------------------hhheeeecCCCceEEEECcc
Confidence            9999999998888877777777777776                  5678899999999886 443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=5.7e-24  Score=190.92  Aligned_cols=301  Identities=17%  Similarity=0.240  Sum_probs=210.4

Q ss_pred             cchhhhhhhhccCc-eEEEeeeecccCCCeeEEEEee------cccccCccceEEEEeecccCcccCCcceeeEEEeeCC
Q 046899           11 SVDDRYTQWKSLVP-VLYDWLANHNLVWPSLSCRWGP------QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHP   83 (407)
Q Consensus        11 ~~~~~~~~w~~~~~-~~y~~l~~~~~~~p~~s~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~   83 (407)
                      .+-+..-.|.-++| .-|   -.+.++-|.+.+.|.+      .++.+..++.+.++.........  .......-+.|.
T Consensus        26 ~~~~~~~s~~gi~~~~s~---~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~--ee~~lk~~~aH~  100 (720)
T KOG0321|consen   26 DIGKALSSCRGIAPITSY---ANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL--EERQLKKPLAHK  100 (720)
T ss_pred             hHhhhhhhhccccccccc---ccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcch--hhhhhccccccc
Confidence            33445556666666 333   2334444556666644      36677778888777444221110  111123445799


Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      +.|..+.|.| ....|++++.|.++++||+.+..+...                                          
T Consensus       101 nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~------------------------------------------  137 (720)
T KOG0321|consen  101 NAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGG------------------------------------------  137 (720)
T ss_pred             ceeEeeccCC-CceeEEEccCCceeeeeeeccceeecc------------------------------------------
Confidence            9999999999 888999999999999999987643221                                          


Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--------------
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--------------  229 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------  229 (407)
                                              ..+.+|+..|.+++|.|.++..|++|+.||.|.|||++-...              
T Consensus       138 ------------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~  193 (720)
T KOG0321|consen  138 ------------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH  193 (720)
T ss_pred             ------------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence                                    235689999999999999999999999999999999985420              


Q ss_pred             --------C---ceeeecccCcc----eEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecC--C---C
Q 046899          230 --------P---AVKVEKAHNAD----IHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEG--H---S  288 (407)
Q Consensus       230 --------~---~~~~~~~~~~~----v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~--h---~  288 (407)
                              +   ......++...    |+.+.| . |...||+++. |+.|+|||++........++......  |   .
T Consensus       194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs  271 (720)
T KOG0321|consen  194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS  271 (720)
T ss_pred             cCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence                    0   00111223333    444444 4 7788998888 99999999998765554555544433  3   3


Q ss_pred             CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc--cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899          289 AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK--QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC  366 (407)
Q Consensus       289 ~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~  366 (407)
                      -.+.++.....|.+|+|+|. |+.|.+|++.....-  ..+.++..                ..++-...+.+|+..+++
T Consensus       272 ~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~----------------~sf~vks~lSpd~~~l~S  334 (720)
T KOG0321|consen  272 VGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLN----------------SSFYVKSELSPDDCSLLS  334 (720)
T ss_pred             eeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCccc----------------ceeeeeeecCCCCceEec
Confidence            36888888888999998877 999999999875432  22222111                112223566778999999


Q ss_pred             EEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          367 LTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       367 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      |+.|....+|.+.+     -.+....+.||.-.|++|+|+|
T Consensus       335 gSsd~~ayiw~vs~-----~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  335 GSSDEQAYIWVVSS-----PEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             cCCCcceeeeeecC-----ccCChhhhhCcceEEEEEeecc
Confidence            99999999999984     5677889999999999999986

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=6.9e-25  Score=198.52  Aligned_cols=257  Identities=17%  Similarity=0.219  Sum_probs=203.8

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc--cccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH--AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      .+.+|...|..+++.+  +..+++++.||++++|+-...+.+.  .+.++...++.   ++.+..               
T Consensus         9 ~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~---~i~y~e---------------   68 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIAN---SICYAE---------------   68 (745)
T ss_pred             EeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeec---cceecc---------------
Confidence            3448999999998665  4579999999999999986655433  22333332211   011110               


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  235 (407)
                            ...-.++.|+.|..+.+|......++..+++|+..|.|+....++ . +++||.|.++++|-..+    +...+
T Consensus        69 ------~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~----l~~~l  136 (745)
T KOG0301|consen   69 ------SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGE----LVYSL  136 (745)
T ss_pred             ------ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchh----hhccc
Confidence                  111236778899999999999999999999999999999988877 4 99999999999998754    44568


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      .+|+..|+++..-| +. .++||+.|.+|++|.-        ++.+++|.+|.+.|+.+++-+++. + +|++.||.|++
T Consensus       137 ~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--------~~~l~tf~gHtD~VRgL~vl~~~~-f-lScsNDg~Ir~  204 (745)
T KOG0301|consen  137 QGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--------GTLLKTFSGHTDCVRGLAVLDDSH-F-LSCSNDGSIRL  204 (745)
T ss_pred             CCcchheeeeeecC-CC-cEEeccCcceeeeccC--------CchhhhhccchhheeeeEEecCCC-e-EeecCCceEEE
Confidence            89999999999988 54 8899999999999976        468899999999999999999877 4 59999999999


Q ss_pred             EeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhh
Q 046899          316 WDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK  395 (407)
Q Consensus       316 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  395 (407)
                      |++ +++.+.++.+|..-++++....+                  ...|++.+.|++++||+.        ++|++.+.-
T Consensus       205 w~~-~ge~l~~~~ghtn~vYsis~~~~------------------~~~Ivs~gEDrtlriW~~--------~e~~q~I~l  257 (745)
T KOG0301|consen  205 WDL-DGEVLLEMHGHTNFVYSISMALS------------------DGLIVSTGEDRTLRIWKK--------DECVQVITL  257 (745)
T ss_pred             Eec-cCceeeeeeccceEEEEEEecCC------------------CCeEEEecCCceEEEeec--------CceEEEEec
Confidence            999 67899999999998777765444                  678999999999999996        367777765


Q ss_pred             cccceeEeec
Q 046899          396 FKSHIFGCDK  405 (407)
Q Consensus       396 h~~~v~~~~~  405 (407)
                      ..-.|+++.+
T Consensus       258 PttsiWsa~~  267 (745)
T KOG0301|consen  258 PTTSIWSAKV  267 (745)
T ss_pred             CccceEEEEE
Confidence            5556776654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=2.2e-24  Score=204.79  Aligned_cols=236  Identities=20%  Similarity=0.321  Sum_probs=191.4

Q ss_pred             CCCceEEEEEeCCCCeEEEEee--CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHT--DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA  159 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  159 (407)
                      ++..|.++..+| ++..+|||+  .||.++||+...--....                                      
T Consensus        12 ~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~--------------------------------------   52 (942)
T KOG0973|consen   12 NEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKE--------------------------------------   52 (942)
T ss_pred             CCeeEEEEEecC-CceeEecCCccccccceeeccccccchhh--------------------------------------
Confidence            446689999999 999999999  999999999864210000                                      


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-C-----------
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-G-----------  227 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~-----------  227 (407)
                                        .++..-.+.+..+..|.+.|+|+.|+|+| .+||+|++|+.|.+|+... +           
T Consensus        53 ------------------~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~  113 (942)
T KOG0973|consen   53 ------------------EKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGA  113 (942)
T ss_pred             ------------------hhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccc
Confidence                              00111224566777899999999999999 8999999999999999873 0           


Q ss_pred             ----CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCE
Q 046899          228 ----STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV  303 (407)
Q Consensus       228 ----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  303 (407)
                          +......+.+|...|..++|+| ++.+|++++.|++|.+||.++      ++.+..+++|.+.|-.+.|.|-|+|+
T Consensus       114 ~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~t------F~~~~vl~~H~s~VKGvs~DP~Gky~  186 (942)
T KOG0973|consen  114 KNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKT------FELLKVLRGHQSLVKGVSWDPIGKYF  186 (942)
T ss_pred             cccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccc------ceeeeeeecccccccceEECCccCee
Confidence                0124567789999999999999 999999999999999999999      89999999999999999999999986


Q ss_pred             EEEeeCCCeEEEEeCCCCCcccccccC------CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe-e---eE
Q 046899          304 FGSSAEDGILNIWDHEKIGEKQDYGEL------KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV-K---VL  373 (407)
Q Consensus       304 l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~---~i  373 (407)
                       ||-+.|++|++|++...+....+.++      ..-.+.+.||||                  +.+|++...- +   ++
T Consensus       187 -ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD------------------G~~las~nA~n~~~~~~  247 (942)
T KOG0973|consen  187 -ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD------------------GHHLASPNAVNGGKSTI  247 (942)
T ss_pred             -eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC------------------cCeecchhhccCCccee
Confidence             89999999999998876666555432      334677899999                  7777744332 2   78


Q ss_pred             EEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          374 EIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .|-+-.      ++..-..|-||.++|.+++|+|
T Consensus       248 ~IieR~------tWk~~~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  248 AIIERG------TWKVDKDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             EEEecC------CceeeeeeecCCCceEEEEeCh
Confidence            887766      6777789999999999999986

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.8e-24  Score=181.87  Aligned_cols=255  Identities=20%  Similarity=0.295  Sum_probs=190.7

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      .+++|+.||.++||..+     ..   ........|.|.|+.|++..   ..++|++.|.+|+.|.+... ...++.+..
T Consensus        81 ~~aSGs~DG~VkiWnls-----qR---~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~-p~~tilg~s  148 (433)
T KOG0268|consen   81 TVASGSCDGEVKIWNLS-----QR---ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP-PLHTILGKS  148 (433)
T ss_pred             hhhccccCceEEEEehh-----hh---hhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC-cceeeeccc
Confidence            48899999999999221     11   11233347999999999764   56889999999999998763 333322211


Q ss_pred             C------------CCCCCCCcEEEEecccc--ccccccCCCCCcccccCCC-CCccccccCCCCCCCCCCCCcCceeeEe
Q 046899          127 D------------SHPDLDQSVVLWSIQDH--VSALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESPSIGARGKYL  191 (407)
Q Consensus       127 ~------------~~~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~  191 (407)
                      .            +..+ ...|.|||.+..  ...+....+.+........ .+.++++++|+.|.++|+....+++.+.
T Consensus       149 ~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi  227 (433)
T KOG0268|consen  149 VYLGIDHHRKNSVFATC-GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI  227 (433)
T ss_pred             ccccccccccccccccc-CceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee
Confidence            0            0000 456999998654  4444444444444444444 3567778899999999999999887765


Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                       -...-+.|+|+|.. ..|++|++|..+..||++..+.| .....+|.+.|..++|+| .|+.|++|+.|.+|+||..+.
T Consensus       228 -~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p-~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  228 -LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRP-LNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             -eeccccceecCccc-cceeeccccccceehhhhhhccc-chhhcccceeEEEeccCC-CcchhccccccceEEEeecCC
Confidence             34566889999966 78999999999999999988864 667789999999999999 899999999999999999987


Q ss_pred             CCCCCCCCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899          272 LTSDGVGSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ  325 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~  325 (407)
                            +.....+.. --..|.|+.|+-|.+|++ +||.|+.|++|-....+.+.
T Consensus       304 ------~~SRdiYhtkRMq~V~~Vk~S~Dskyi~-SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  304 ------GHSRDIYHTKRMQHVFCVKYSMDSKYII-SGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             ------CcchhhhhHhhhheeeEEEEeccccEEE-ecCCCcceeeeecchhhhcC
Confidence                  333322211 124699999999999986 99999999999887655443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=5.6e-23  Score=169.03  Aligned_cols=259  Identities=13%  Similarity=0.156  Sum_probs=194.3

Q ss_pred             EEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC
Q 046899           42 CRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP  117 (407)
Q Consensus        42 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  117 (407)
                      +.|.|    .++.+++|+++|+|   ++...   ..........|.++|.+++|+. +|..+++|+.|+++++||+.+++
T Consensus        33 l~FSP~~~~~~~A~SWD~tVR~w---evq~~---g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   33 LAFSPQADNLLAAGSWDGTVRIW---EVQNS---GQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             eEeccccCceEEecccCCceEEE---EEecC---CcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCC
Confidence            36777    35689999999999   33322   1122233346999999999998 88999999999999999999984


Q ss_pred             CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCE
Q 046899          118 NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTV  197 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v  197 (407)
                       ...+..|...+    ++++..                    .+.....+++|+-|.+++.||.....++.++. -.+.+
T Consensus       106 -~~~v~~Hd~pv----kt~~wv--------------------~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv  159 (347)
T KOG0647|consen  106 -VSQVAAHDAPV----KTCHWV--------------------PGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV  159 (347)
T ss_pred             -eeeeeecccce----eEEEEe--------------------cCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence             33344443331    111111                    11223457889999999999999988888875 34567


Q ss_pred             EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899          198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV  277 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~  277 (407)
                      +++..-.   .+++.+..++.|.+|+++++...........+-.+.||+..+ +....+.|+-+|.+.+..+....    
T Consensus       160 Ya~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~----  231 (347)
T KOG0647|consen  160 YAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPN----  231 (347)
T ss_pred             eehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCC----
Confidence            7776543   478888889999999998775322222233455788999988 77777999999999999988732    


Q ss_pred             CCceeeecCCCC---------CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          278 GSPIHKFEGHSA---------AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       278 ~~~~~~~~~h~~---------~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      .+.-.+|+.|..         .|++|+|+|.... |+|.|.||++.+||-.....+.+.+.+..||++..|+.+
T Consensus       232 ~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt-lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~  304 (347)
T KOG0647|consen  232 PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT-LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRN  304 (347)
T ss_pred             ccCceeEEEeccCCCCCCceEEecceEeecccce-EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCC
Confidence            255567777763         5889999997774 589999999999999998999999999999999999887

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3e-23  Score=171.21  Aligned_cols=252  Identities=15%  Similarity=0.176  Sum_probs=192.2

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC------------CCCCCCCcEEEEeccccccc-c
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD------------SHPDLDQSVVLWSIQDHVSA-L  148 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~------------~~~~~d~~i~~w~~~~~~~~-~  148 (407)
                      -.+.|.+|.|+| ..+.|+.++.||++++||+...+....+.....            ...++||.|+.+|++++... +
T Consensus        12 P~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   12 PEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             ChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceee
Confidence            357899999998 555666777999999999988754443322111            11122999999999987554 4


Q ss_pred             ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899          149 AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS  228 (407)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  228 (407)
                      ..+...+..+........+++|+-|++|++||.........+. ....|.|+....   +.|+.|+.|..|.+||+|+..
T Consensus        91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccC---CEEEEeecCceEEEEEccccc
Confidence            4555666666666667789999999999999998755555554 445899988763   678999999999999999987


Q ss_pred             CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC---------CEEEEEEcCC
Q 046899          229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA---------AVLCVQWSPD  299 (407)
Q Consensus       229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~---------~v~~v~~~~~  299 (407)
                      .+........+-.+.|+++-| ++.-++.++-||.|.+=.+.....  .......|+.|..         +|++|+|||-
T Consensus       167 ~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~--~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEE--AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             chhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchH--HhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            544334445567889999999 777788889999988765554211  1345567777743         8999999998


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          300 KSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       300 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      ... ||||+.||.|.+||+.+.+.+..+......|..++|+.|
T Consensus       244 ~~t-faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~d  285 (323)
T KOG1036|consen  244 HGT-FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMD  285 (323)
T ss_pred             cce-EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccC
Confidence            664 589999999999999999999998888888889999888

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.4e-25  Score=201.29  Aligned_cols=236  Identities=17%  Similarity=0.272  Sum_probs=202.8

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      ....|...|.++.. ....+.+++|+.|..+-+|.+........+.+|...+.+       .+                 
T Consensus        23 ~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeS-------l~-----------------   77 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIES-------LT-----------------   77 (825)
T ss_pred             hhhhhhhhhceeee-eccceeeccCCCceeeccccccCCchhheeeccCCccee-------ee-----------------
Confidence            33469999999997 448899999999999999999877666666666544211       11                 


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA  237 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  237 (407)
                        +......+++|+.+|.|++||+...+.++++.+|...+..+.|+|.+ .++++|+.|+-+++||.+...  +...+.+
T Consensus        78 --f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~G--c~~~~~s  152 (825)
T KOG0267|consen   78 --FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKG--CSHTYKS  152 (825)
T ss_pred             --cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccC--ceeeecC
Confidence              22222346778899999999999999999999999999999999999 889999999999999999776  7888889


Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      |...|.++.|+| +|++++.|+.|..++|||...      ++.+.+|..|+..|..+.|+|..- |+++||.|+++++||
T Consensus       153 ~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~a------gk~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  153 HTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTA------GKLSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWD  224 (825)
T ss_pred             CcceeEEEeecC-CCceeeccCCcceeeeecccc------cccccccccccccccccccCchhh-hhccCCCCceeeeec
Confidence            999999999999 999999999999999999999      999999999999999999999876 779999999999999


Q ss_pred             CCCCCcccccccCCCcccCCCCcCcchhccccce
Q 046899          318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLL  351 (407)
Q Consensus       318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~  351 (407)
                      +++.+.+........+|.+..|+++...+.+|..
T Consensus       225 letfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  225 LETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             cceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence            9999888888888889999999999655555544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-22  Score=159.92  Aligned_cols=287  Identities=18%  Similarity=0.219  Sum_probs=213.3

Q ss_pred             CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           70 RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        70 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      ..+.++.+..+.....|.+++|+| .|.+.|.|+..++.||--.......+  .+|.....  -..+. ..      ...
T Consensus        19 ~k~~f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r--~~hea~~~--pp~v~-~k------r~k   86 (350)
T KOG0641|consen   19 EKKHFEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLR--HAHEAAKQ--PPSVL-CK------RNK   86 (350)
T ss_pred             cccceEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcc--cccccccC--CCeEE-ee------ecc
Confidence            455667777788889999999999 88899999999999998664322111  11111100  00011 10      011


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCC--CcC---ceeeEeecccCEEEEEECCC---CCcEEEEEeC-CCcEE
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESP--SIG---ARGKYLGHEDTVEDVQFCPS---SAQEFCSVGD-DSCLI  220 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~--~~~---~~~~~~~~~~~v~~l~~~~~---~~~~l~s~~~-dg~i~  220 (407)
                      -+.+.+.+.+..+....+++|++|.+|++...+  +.+   .-..+.-|.+.|..++|..+   +..+|++++. |..|.
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy  166 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY  166 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence            223333344444444568889999999885433  322   22456679999999999643   3467887764 78888


Q ss_pred             EEEcCCCCCCceeeecccCcceEEEE-ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--C-----CCCEE
Q 046899          221 LWDARSGSTPAVKVEKAHNADIHCVD-WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--H-----SAAVL  292 (407)
Q Consensus       221 iwd~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h-----~~~v~  292 (407)
                      +-|...++  ....+.+|.+-|.++- |   ++-++++|+.|.+|++||+|.      ..++.++..  |     ...|.
T Consensus       167 ~tdc~~g~--~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv------~~~v~~l~~~~~~~glessava  235 (350)
T KOG0641|consen  167 ITDCGRGQ--GFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRV------NSCVNTLDNDFHDGGLESSAVA  235 (350)
T ss_pred             EeecCCCC--cceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeec------cceeeeccCcccCCCcccceeE
Confidence            88988888  6888899999998764 4   568999999999999999998      667776643  2     35799


Q ss_pred             EEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899          293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV  372 (407)
Q Consensus       293 ~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  372 (407)
                      +++..|.|+ ||++|-.|....+||++.++.++.+..|...|.++.|||.                  ..++++++.|-.
T Consensus       236 av~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~------------------a~yllt~syd~~  296 (350)
T KOG0641|consen  236 AVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG------------------AHYLLTCSYDMK  296 (350)
T ss_pred             EEEECCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC------------------ceEEEEecccce
Confidence            999999999 6689999999999999999999999999999999999997                  779999999999


Q ss_pred             EEEeeccccccCChHHHHHHH-----hhcccceeEeec
Q 046899          373 LEIWRMIDLIYRPEEEVLAEL-----DKFKSHIFGCDK  405 (407)
Q Consensus       373 i~iwd~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~  405 (407)
                      |++=|+.       |.+.+.+     ..|++.+..+.|
T Consensus       297 ikltdlq-------gdla~el~~~vv~ehkdk~i~~rw  327 (350)
T KOG0641|consen  297 IKLTDLQ-------GDLAHELPIMVVAEHKDKAIQCRW  327 (350)
T ss_pred             EEEeecc-------cchhhcCceEEEEeccCceEEEEe
Confidence            9999996       5555543     368877766655

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.3e-21  Score=162.38  Aligned_cols=276  Identities=17%  Similarity=0.154  Sum_probs=205.5

Q ss_pred             CCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEee-CCCceEEEEEeCCCCeEEEEeeC--CCcEEE
Q 046899           37 WPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTII-HPGEVNRIRELPQNSKIVATHTD--SPDVLI  110 (407)
Q Consensus        37 ~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~tg~~--dg~i~v  110 (407)
                      -+..+++|.+.   +.+.+.|..++||-..         ..+..+.+. ++-.|..++|..++.. ++.++.  |.+||.
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~---------~g~~~~ti~skkyG~~~~~Fth~~~~-~i~sStk~d~tIry   84 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSL---------SGKQVKTINSKKYGVDLACFTHHSNT-VIHSSTKEDDTIRY   84 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcC---------CCceeeEeecccccccEEEEecCCce-EEEccCCCCCceEE
Confidence            34556777653   5566777789999222         222333333 4456888888764444 444444  789999


Q ss_pred             EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899          111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY  190 (407)
Q Consensus       111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  190 (407)
                      -++.+.+.++.+.+|...+..                          +...+.+..+++++.|+++++||++..++...+
T Consensus        85 Lsl~dNkylRYF~GH~~~V~s--------------------------L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l  138 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNS--------------------------LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL  138 (311)
T ss_pred             EEeecCceEEEcCCCCceEEE--------------------------EEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence            999999999888888664321                          112333456788999999999999988877776


Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcceEEEEecCCCCCEEEEEeCCCcEEEE
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADIHCVDWNPHDVNLILTGSADNSIHMF  267 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  267 (407)
                      .....  ..++|.|+| -+||++.....|++||+|.-...+..++.   +...+.+.|.|+| +|++|+.+...+.+++.
T Consensus       139 ~~~~~--pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~l  214 (311)
T KOG1446|consen  139 NLSGR--PIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLL  214 (311)
T ss_pred             ecCCC--cceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEE
Confidence            54333  457999999 88999988889999999987543344433   3366789999999 99999999999999999


Q ss_pred             eCCCCCCCCCCCceeeecCCCCCE---EEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcCcc
Q 046899          268 DRRKLTSDGVGSPIHKFEGHSAAV---LCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSDM  343 (407)
Q Consensus       268 d~~~~~~~~~~~~~~~~~~h~~~v---~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~  343 (407)
                      |.-.      |..+.++..+...-   ....|+|+++++| +|+.||+|.+|+++++..+..+.+ +..++.++.|+|. 
T Consensus       215 DAf~------G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl-~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~-  286 (311)
T KOG1446|consen  215 DAFD------GTVKSTFSGYPNAGNLPLSATFTPDSKFVL-SGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR-  286 (311)
T ss_pred             EccC------CcEeeeEeeccCCCCcceeEEECCCCcEEE-EecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc-
Confidence            9988      88888888765432   5778999999876 999999999999999999998888 6889999999886 


Q ss_pred             hhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                         +..-.+.++.+-+|=..
T Consensus       287 -------------------~~mf~sa~s~l~fw~p~  303 (311)
T KOG1446|consen  287 -------------------YAMFVSASSNLVFWLPD  303 (311)
T ss_pred             -------------------eeeeeecCceEEEEecc
Confidence                               12234556677788654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=4.4e-23  Score=175.38  Aligned_cols=260  Identities=18%  Similarity=0.344  Sum_probs=192.9

Q ss_pred             EEeeeecccCCCeeEEEEeeccc----ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEe
Q 046899           27 YDWLANHNLVWPSLSCRWGPQLE----QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATH  102 (407)
Q Consensus        27 y~~l~~~~~~~p~~s~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg  102 (407)
                      |+-+-.....|.+..|.-+|.+.    .++..+...+.  + +++-.+.+.-... .-||+++|..++|+|.+.+.||+|
T Consensus        25 YddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~Vi--P-l~k~Gr~d~~~P~-v~GHt~~vLDi~w~PfnD~vIASg  100 (472)
T KOG0303|consen   25 YDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVI--P-LVKTGRMDASYPL-VCGHTAPVLDIDWCPFNDCVIASG  100 (472)
T ss_pred             hcceeeeeeeccccccccCCceEEEEEecCCCcceeec--c-cccccccCCCCCC-ccCccccccccccCccCCceeecC
Confidence            57777788899999998888532    23333222222  1 1111111111111 128999999999999999999999


Q ss_pred             eCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC
Q 046899          103 TDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP  182 (407)
Q Consensus       103 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~  182 (407)
                      +.|.+|.||++..+.....+                                                            
T Consensus       101 SeD~~v~vW~IPe~~l~~~l------------------------------------------------------------  120 (472)
T KOG0303|consen  101 SEDTKVMVWQIPENGLTRDL------------------------------------------------------------  120 (472)
T ss_pred             CCCceEEEEECCCcccccCc------------------------------------------------------------
Confidence            99999999999865433221                                                            


Q ss_pred             CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC
Q 046899          183 SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN  262 (407)
Q Consensus       183 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg  262 (407)
                       .+++..+.+|...|.-++|+|.-.+.|++++.|.+|.+||+.++.  ...++. |...|++++|+. +|.+|+|.+.|.
T Consensus       121 -tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-hpd~i~S~sfn~-dGs~l~TtckDK  195 (472)
T KOG0303|consen  121 -TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-HPDMVYSMSFNR-DGSLLCTTCKDK  195 (472)
T ss_pred             -ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-CCCeEEEEEecc-CCceeeeecccc
Confidence             146778889999999999999988999999999999999999998  566654 999999999999 999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeeecCCCC-CEEEEEEcCCCCCEEEEee---CCCeEEEEeCCCCCcccccccC--CCcccC
Q 046899          263 SIHMFDRRKLTSDGVGSPIHKFEGHSA-AVLCVQWSPDKSSVFGSSA---EDGILNIWDHEKIGEKQDYGEL--KYPIIH  336 (407)
Q Consensus       263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~ll~s~~---~d~~i~vwd~~~~~~~~~~~~~--~~~v~~  336 (407)
                      .|||||.++      ++.+.+-.+|.+ .-..+.|-.+|. ++.||-   .+.++-+||..+.+....+...  +..|.-
T Consensus       196 kvRv~dpr~------~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~  268 (472)
T KOG0303|consen  196 KVRVIDPRR------GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL  268 (472)
T ss_pred             eeEEEcCCC------CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEE
Confidence            999999999      899998888875 345566777888 665553   4789999999887766444332  222323


Q ss_pred             CCCcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeeccc
Q 046899          337 PAYSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       337 ~~~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~~  380 (407)
                      ..|.+|                  .. ..++|-.|+.||.|.+..
T Consensus       269 PFyD~d------------------t~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  269 PFYDPD------------------TSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             eeecCC------------------CCEEEEEecCCcceEEEEecC
Confidence            333333                  33 344888999999999864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=8.6e-23  Score=176.83  Aligned_cols=221  Identities=19%  Similarity=0.236  Sum_probs=178.4

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      +|...|.+++.++ ++++||||+.|..|.||+.++.+.+..+.+|...+.++                          ++
T Consensus       200 ~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L--------------------------~f  252 (479)
T KOG0299|consen  200 GHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSL--------------------------AF  252 (479)
T ss_pred             cccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeee--------------------------ee
Confidence            7999999999999 99999999999999999999999888887776654221                          11


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                      -.-.+.+.+++.|.++++|+++....+.++.+|...|..|.....+ ..+.+|+.|+++++|++....   ...+.++.+
T Consensus       253 r~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees---qlifrg~~~  328 (479)
T KOG0299|consen  253 RKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES---QLIFRGGEG  328 (479)
T ss_pred             ecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc---eeeeeCCCC
Confidence            1112346678889999999999999999999999999999988877 677777799999999995444   556778898


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-C-----------CCCEEEEEEcCCCCCEEEEee
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-H-----------SAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h-----------~~~v~~v~~~~~~~~ll~s~~  308 (407)
                      .+-|++|-.  ...|++|+.+|.|.+|++..      .+++.+.+. |           ..+|++++..|... |+|+|+
T Consensus       329 sidcv~~In--~~HfvsGSdnG~IaLWs~~K------Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS  399 (479)
T KOG0299|consen  329 SIDCVAFIN--DEHFVSGSDNGSIALWSLLK------KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGS  399 (479)
T ss_pred             CeeeEEEec--ccceeeccCCceEEEeeecc------cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecC
Confidence            999999974  57899999999999999998      677776642 2           22899999999888 779999


Q ss_pred             CCCeEEEEeCCCCCc----ccccccCCCcccCCCCcCc
Q 046899          309 EDGILNIWDHEKIGE----KQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       309 ~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d  342 (407)
                      .+|.|++|-+..+-.    +..++ ..+.|++++|+.+
T Consensus       400 ~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~s  436 (479)
T KOG0299|consen  400 WSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNS  436 (479)
T ss_pred             CCCceEEEEecCCccccceeeecc-cccEEEEEEEccC
Confidence            999999999987622    22222 4556777777666

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=176.04  Aligned_cols=289  Identities=13%  Similarity=0.184  Sum_probs=219.1

Q ss_pred             CeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           38 PSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        38 p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      +..+++|.|   .+.+++.|++++||   +.+-. ..+.+.  ...--..+|.+.+|.|++...+++++.......||+.
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrif---qvDGk-~N~~lq--S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIF---QVDGK-VNPKLQ--SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEE---EecCc-cChhhe--eeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            455888877   48899999999999   33222 222222  2223578999999999444499999999999999998


Q ss_pred             CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecc
Q 046899          115 AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHE  194 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  194 (407)
                      +.+..+.-......    ...+..+.+                   ......++..+..|.|.+....+++.+..++ ..
T Consensus       289 ~ak~~k~~~~~g~e----~~~~e~FeV-------------------Shd~~fia~~G~~G~I~lLhakT~eli~s~K-ie  344 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVE----EKSMERFEV-------------------SHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE  344 (514)
T ss_pred             ccccccccCCCCcc----cchhheeEe-------------------cCCCCeEEEcccCceEEeehhhhhhhhheee-ec
Confidence            87644321111000    112222222                   1223457788899999999999999998886 57


Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc-ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA-DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      +.|..++|+.++ ..|++++.+|.|.+||+++..  ++..+....+ .-++++.++ ++.+||+|+..|.|.|||.++..
T Consensus       345 G~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  345 GVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCF  420 (514)
T ss_pred             cEEeeEEEecCC-cEEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhh
Confidence            889999999998 677777788999999999886  5665543322 335677788 88999999999999999987765


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee--CCCeEEEEeCCCCCcccccccCCCc---ccCCCCcCcchhccc
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGILNIWDHEKIGEKQDYGELKYP---IIHPAYSSDMLDIET  348 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~s~d~~~~~~  348 (407)
                      .....+|+.++..-...|++++|++++. |||.+|  .+..+|+-.+.+......++....+   |++++|||.      
T Consensus       421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~------  493 (514)
T KOG2055|consen  421 ASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN------  493 (514)
T ss_pred             ccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC------
Confidence            5555788988888888999999999998 556665  4788999999998888888876655   677888887      


Q ss_pred             cceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                  +.+++.|..+|.+++|.+.
T Consensus       494 ------------sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  494 ------------SGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ------------CceEEeecCCCceeeEeec
Confidence                        9999999999999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.8e-24  Score=203.51  Aligned_cols=242  Identities=16%  Similarity=0.276  Sum_probs=193.5

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      .++.|..||.+-+|....+-.....  ....+...|.+.|..+.|++..+++||+|+.||.|.|||+...+.-....   
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~--~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---  156 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASE--EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---  156 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcch--HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---
Confidence            3888999999999954422111112  22233346999999999999888899999999999999998643221110   


Q ss_pred             CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC
Q 046899          127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS  206 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~  206 (407)
                                                                                     -....+.|.+++|+..-
T Consensus       157 ---------------------------------------------------------------~~~~~~eI~~lsWNrkv  173 (1049)
T KOG0307|consen  157 ---------------------------------------------------------------SQAPPSEIKCLSWNRKV  173 (1049)
T ss_pred             ---------------------------------------------------------------CCCCcccceEeccchhh
Confidence                                                                           01235689999999887


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc--ceEEEEecCCCCCEEEEEeCCC---cEEEEeCCCCCCCCCCCce
Q 046899          207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA--DIHCVDWNPHDVNLILTGSADN---SIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~l~tg~~dg---~i~vwd~~~~~~~~~~~~~  281 (407)
                      .++|++++.+|++.|||+|..+  .+..+..+..  .+..+.|+|++...+++++.|.   .|.+||+|..     ..++
T Consensus       174 qhILAS~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-----ssP~  246 (1049)
T KOG0307|consen  174 SHILASGSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-----SSPL  246 (1049)
T ss_pred             hHHhhccCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-----CCch
Confidence            6899999999999999999886  3445444443  5778999997778888887765   6999999985     4788


Q ss_pred             eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcc
Q 046899          282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG  361 (407)
Q Consensus       282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~  361 (407)
                      +++++|...|.++.|++.+..+++|++.|+.|.+|+.++++.+..+......+..+.|.|..                 -
T Consensus       247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~-----------------P  309 (1049)
T KOG0307|consen  247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRN-----------------P  309 (1049)
T ss_pred             hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCC-----------------c
Confidence            99999999999999999986677899999999999999999999999988899999998762                 4


Q ss_pred             ceeeeEEEeeeEEEeeccc
Q 046899          362 RLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       362 ~~i~~~~~d~~i~iwd~~~  380 (407)
                      ..+++.++||.|.|+.+..
T Consensus       310 ~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  310 SVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             chhhhheeccceeeeeeec
Confidence            5788999999999999964

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.9e-23  Score=182.72  Aligned_cols=269  Identities=16%  Similarity=0.215  Sum_probs=207.8

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc---ccCc---CCC-----CCCC--------CCcE
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA---VLGA---ADS-----HPDL--------DQSV  136 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~---~~~~---~~~-----~~~~--------d~~i  136 (407)
                      ....+.|..-|.++..+. ..+.+.||+. |.|+|||+........   +...   ...     .++.        -.++
T Consensus       412 q~~tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl  489 (705)
T KOG0639|consen  412 QINTLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL  489 (705)
T ss_pred             hhhhhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence            345567999999999887 7788999987 7999999976432111   1110   000     0111        5689


Q ss_pred             EEEeccccccccccCC----CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEE
Q 046899          137 VLWSIQDHVSALAAEP----GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS  212 (407)
Q Consensus       137 ~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s  212 (407)
                      .|||+......+...-    .....++........++...||.|.|||+.....++.+++|++.+.||..+++| ..|.+
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG-tklWT  568 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG-TKLWT  568 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-ceeec
Confidence            9999987644333222    222334455556678889999999999999999999999999999999999999 78999


Q ss_pred             EeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE
Q 046899          213 VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL  292 (407)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~  292 (407)
                      |+.|++|+.||++++.+...   ....+.|.++..+| .+.+++.|-..+.+-+.....       ...+.+..|+..|.
T Consensus       569 GGlDntvRcWDlregrqlqq---hdF~SQIfSLg~cP-~~dWlavGMens~vevlh~sk-------p~kyqlhlheScVL  637 (705)
T KOG0639|consen  569 GGLDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSK-------PEKYQLHLHESCVL  637 (705)
T ss_pred             CCCccceeehhhhhhhhhhh---hhhhhhheecccCC-CccceeeecccCcEEEEecCC-------ccceeecccccEEE
Confidence            99999999999999884322   23467899999999 899999999999999988875       55667778999999


Q ss_pred             EEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899          293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV  372 (407)
Q Consensus       293 ~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  372 (407)
                      ++.|.+.|++. ++.+.|+.+..|...-+..+-.... ..+|.+...|.|                  ..+|++||.|..
T Consensus       638 SlKFa~cGkwf-vStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~d------------------dkyIVTGSGdkk  697 (705)
T KOG0639|consen  638 SLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFD------------------DKYIVTGSGDKK  697 (705)
T ss_pred             EEEecccCcee-eecCchhhhhhccCccccceeeccc-cCcceeeeeccC------------------ceEEEecCCCcc
Confidence            99999999965 7999999999999887655544333 456777777666                  889999999998


Q ss_pred             EEEeec
Q 046899          373 LEIWRM  378 (407)
Q Consensus       373 i~iwd~  378 (407)
                      -.||.+
T Consensus       698 ATVYeV  703 (705)
T KOG0639|consen  698 ATVYEV  703 (705)
T ss_pred             eEEEEE
Confidence            888875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.5e-22  Score=163.94  Aligned_cols=278  Identities=17%  Similarity=0.213  Sum_probs=175.9

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-----c-ccc-CcCC---CCCCC---------CCcEE
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-----H-AVL-GAAD---SHPDL---------DQSVV  137 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-----~-~~~-~~~~---~~~~~---------d~~i~  137 (407)
                      ..+.+|.+.|++|+|+. +|+.|||++.|++|++|++..-...     + .+. +|..   +.++-         ..+++
T Consensus        80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            34558999999999998 9999999999999999998753211     0 000 0100   00000         11122


Q ss_pred             EEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC
Q 046899          138 LWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS  217 (407)
Q Consensus       138 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg  217 (407)
                      +|.+....              .         |+..-...-||-.     ..-+.|.-.|-.+-.-..+ .++++++.|.
T Consensus       159 vyk~~K~~--------------d---------G~~~~~~v~~D~~-----~f~~kh~v~~i~iGiA~~~-k~imsas~dt  209 (420)
T KOG2096|consen  159 VYKLVKKT--------------D---------GSGSHHFVHIDNL-----EFERKHQVDIINIGIAGNA-KYIMSASLDT  209 (420)
T ss_pred             EEEeeecc--------------c---------CCCCccccccccc-----ccchhcccceEEEeecCCc-eEEEEecCCC
Confidence            22111100              0         0000011112211     1112355566666665555 8999999999


Q ss_pred             cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC--CCceeeecCCCCCEEEEE
Q 046899          218 CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV--GSPIHKFEGHSAAVLCVQ  295 (407)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~--~~~~~~~~~h~~~v~~v~  295 (407)
                      .|.+|+++ ++  .+..+......-+..+.+| +|+++++++.---|++|.+-..+...-  -..+..+++|...|..++
T Consensus       210 ~i~lw~lk-Gq--~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a  285 (420)
T KOG2096|consen  210 KICLWDLK-GQ--LLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA  285 (420)
T ss_pred             cEEEEecC-Cc--eeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee
Confidence            99999998 66  5666666666677788999 999999999988999998743221110  245678899999999999


Q ss_pred             EcCCCCCEEEEeeCCCeEEEEeCCCC----CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee
Q 046899          296 WSPDKSSVFGSSAEDGILNIWDHEKI----GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK  371 (407)
Q Consensus       296 ~~~~~~~ll~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~  371 (407)
                      |+|+..++ +|.|.||++++||+.-.    +-...+.....|. +.+-+..+          ...+.+ +..+++.+..+
T Consensus       286 Fsn~S~r~-vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl-~aag~~p~----------RL~lsP-~g~~lA~s~gs  352 (420)
T KOG2096|consen  286 FSNSSTRA-VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPL-HAAGSEPV----------RLELSP-SGDSLAVSFGS  352 (420)
T ss_pred             eCCCccee-EEEecCCcEEEeeccceEecCCCchHhhcCCcch-hhcCCCce----------EEEeCC-CCcEEEeecCC
Confidence            99999987 69999999999998731    1111111111110 11111101          022222 45677888888


Q ss_pred             eEEEeeccccccCChHHHHHHHh-hcccceeEeeccC
Q 046899          372 VLEIWRMIDLIYRPEEEVLAELD-KFKSHIFGCDKSC  407 (407)
Q Consensus       372 ~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~  407 (407)
                      +|+++...      +++....+. .|...|.+++|++
T Consensus       353 ~l~~~~se------~g~~~~~~e~~h~~~Is~is~~~  383 (420)
T KOG2096|consen  353 DLKVFASE------DGKDYPELEDIHSTTISSISYSS  383 (420)
T ss_pred             ceEEEEcc------cCccchhHHHhhcCceeeEEecC
Confidence            99999988      555555554 5999999999985

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.1e-22  Score=187.95  Aligned_cols=259  Identities=15%  Similarity=0.247  Sum_probs=203.7

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      .+|.+.-+.|+|.| +|+.|.|++.||.|++|+....... ..+..+..        ..                    .
T Consensus        10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~--------~v--------------------~   60 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGE--------LV--------------------S   60 (933)
T ss_pred             hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCc--------ee--------------------E
Confidence            47999999999999 8889999999999999998766322 22111111        00                    1


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                      ..+.....+++++.++.+..+....++.-..+...+-++++++|+-+| .++|.||.|-.|++-++....  ....+.+|
T Consensus        61 ~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s--~~~~lrgh  137 (933)
T KOG1274|consen   61 SIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSS--QEKVLRGH  137 (933)
T ss_pred             EEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccc--hheeeccc
Confidence            112222367888899999999888888766666677899999999999 899999999999999998887  67888999


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--------CCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--------HSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                      .++|.++.|+| .+++||+.+.||.|++||+..      +.+..++.+        -...+..++|+|+|..++ .-+.|
T Consensus       138 ~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~------~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la-~~~~d  209 (933)
T KOG1274|consen  138 DAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQD------GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA-VPPVD  209 (933)
T ss_pred             CCceeeeeEcC-CCCEEEEEecCceEEEEEccc------chhhhhcccCCccccccccceeeeeeecCCCCeEE-eeccC
Confidence            99999999999 899999999999999999998      666666543        145678899999977664 66679


Q ss_pred             CeEEEEeCCCCCccccccc--CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH
Q 046899          311 GILNIWDHEKIGEKQDYGE--LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE  388 (407)
Q Consensus       311 ~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~  388 (407)
                      +.|++|+.........+..  +...+..+.|||+                  |.+|+++..+|.|-|||+.      +  
T Consensus       210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn------------------G~YiAAs~~~g~I~vWnv~------t--  263 (933)
T KOG1274|consen  210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN------------------GKYIAASTLDGQILVWNVD------T--  263 (933)
T ss_pred             CeEEEEccCCceeheeecccccccceEEEEEcCC------------------CcEEeeeccCCcEEEEecc------c--
Confidence            9999999998777655543  3333667778776                  9999999999999999998      3  


Q ss_pred             HHHHHhhcccceeEeecc
Q 046899          389 VLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       389 ~~~~~~~h~~~v~~~~~s  406 (407)
                        ..-......|+|++|=
T Consensus       264 --~~~~~~~~~Vc~~aw~  279 (933)
T KOG1274|consen  264 --HERHEFKRAVCCEAWK  279 (933)
T ss_pred             --chhccccceeEEEecC
Confidence              1113445678888874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=4.5e-22  Score=178.29  Aligned_cols=286  Identities=9%  Similarity=0.072  Sum_probs=193.3

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeE-EEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKI-VATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-l~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      +++++.++.+.+|.   .  +.    ......+.+...+.+++|+| +++. +++++.++.|++||..+++....+..+.
T Consensus         4 ~~s~~~d~~v~~~d---~--~t----~~~~~~~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~   73 (300)
T TIGR03866         4 YVSNEKDNTISVID---T--AT----LEVTRTFPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP   73 (300)
T ss_pred             EEEecCCCEEEEEE---C--CC----CceEEEEECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence            45677788888882   1  11    12333334445578899999 5554 5778889999999998776544332211


Q ss_pred             CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC
Q 046899          127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS  206 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~  206 (407)
                      ..      ....|+           +       .+.  ..++++..++.+.+||+.+.+.+..+.. ...+.+++|+|++
T Consensus        74 ~~------~~~~~~-----------~-------~g~--~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg  126 (300)
T TIGR03866        74 DP------ELFALH-----------P-------NGK--ILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG  126 (300)
T ss_pred             Cc------cEEEEC-----------C-------CCC--EEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC
Confidence            10      011111           1       111  1123345678999999988777666642 3456889999999


Q ss_pred             CcEEEEEeCCC-cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE-EEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899          207 AQEFCSVGDDS-CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRRKLTSDGVGSPIHKF  284 (407)
Q Consensus       207 ~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~  284 (407)
                       .++++++.++ .+..||.+++.  ..... .......+++|+| ++..++ ++..++.|++||+++      ++.+..+
T Consensus       127 -~~l~~~~~~~~~~~~~d~~~~~--~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~------~~~~~~~  195 (300)
T TIGR03866       127 -KIVVNTSETTNMAHFIDTKTYE--IVDNV-LVDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVAT------RKVIKKI  195 (300)
T ss_pred             -CEEEEEecCCCeEEEEeCCCCe--EEEEE-EcCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCc------ceeeeee
Confidence             7787777664 57788988766  33322 2234457899999 777775 445699999999998      6666655


Q ss_pred             cCCC-------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEe
Q 046899          285 EGHS-------AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMH  357 (407)
Q Consensus       285 ~~h~-------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~  357 (407)
                      ..+.       .....++|+|++++++++.+.++.|.+||+++++...... +...+.+++|+|+               
T Consensus       196 ~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~---------------  259 (300)
T TIGR03866       196 TFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD---------------  259 (300)
T ss_pred             eecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC---------------
Confidence            4221       1235688999999877666677889999998876654442 3456788889888               


Q ss_pred             eCccceeeeE-EEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          358 LIHGRLLVCL-TMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       358 ~~~~~~i~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                         +..|+++ ..++.|+|||+.      +++++..++.. ...++++|++
T Consensus       260 ---g~~l~~~~~~~~~i~v~d~~------~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       260 ---EKYLLTTNGVSNDVSVIDVA------ALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             ---CCEEEEEcCCCCeEEEEECC------CCcEEEEEEcc-cccceeEeCC
Confidence               7777765 468899999999      78888888765 4559998875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=2.3e-21  Score=169.83  Aligned_cols=333  Identities=12%  Similarity=0.134  Sum_probs=214.4

Q ss_pred             CeeEEEEee--cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC
Q 046899           38 PSLSCRWGP--QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA  115 (407)
Q Consensus        38 p~~s~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  115 (407)
                      -.++++|++  +..|+.+++.+.||       +.....+..... .|.+.|.++.... +|.+| +|+.|..|..||-.-
T Consensus       248 ~Vl~v~F~engdviTgDS~G~i~Iw-------~~~~~~~~k~~~-aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y  317 (626)
T KOG2106|consen  248 FVLCVTFLENGDVITGDSGGNILIW-------SKGTNRISKQVH-AHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNY  317 (626)
T ss_pred             EEEEEEEcCCCCEEeecCCceEEEE-------eCCCceEEeEee-ecCCceEEEEEec-CccEe-ecCccceEEeccccc
Confidence            345667776  58899999999999       223333444444 8999999999777 78655 599999999999322


Q ss_pred             CCCcccccC--cCCCCC---CCCCcEEE---------Eecccc-ccccccCCCCCcccccCCCCCccccccCCCCCCCCC
Q 046899          116 QPNRHAVLG--AADSHP---DLDQSVVL---------WSIQDH-VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLE  180 (407)
Q Consensus       116 ~~~~~~~~~--~~~~~~---~~d~~i~~---------w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d  180 (407)
                      . .++..+-  ....+.   ...+.+.+         =.+++. ......+.+..--.+.......+++.+.|+.+++|+
T Consensus       318 ~-k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  318 R-KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             c-ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence            2 1111111  111110   00111111         122222 112333344444445555567788999999999999


Q ss_pred             CCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC
Q 046899          181 SPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA  260 (407)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~  260 (407)
                        ..+++-+ +.-..++.|+.|+|.|  .+|.|+..|...+.|.++..  .+..-.. +.++++++|+| +|.+||.|+.
T Consensus       397 --~~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~--lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~  467 (626)
T KOG2106|consen  397 --DHKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQD--LVTIHTD-NEQLSVVRYSP-DGAFLAVGSH  467 (626)
T ss_pred             --CCceeEE-EEecCceeEeeccCcc--eEEEeeccceEEEEecccce--eEEEEec-CCceEEEEEcC-CCCEEEEecC
Confidence              2222222 2346789999999998  79999999999999999865  3433333 89999999999 9999999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCceee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCC
Q 046899          261 DNSIHMFDRRKLTSDGVGSPIHK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAY  339 (407)
Q Consensus       261 dg~i~vwd~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  339 (407)
                      |+.|++|-+....     ..... -+.|.++|+.+.|++|++++ .+-+.|-.|-.|.....++...       +..+.|
T Consensus       468 d~~iyiy~Vs~~g-----~~y~r~~k~~gs~ithLDwS~Ds~~~-~~~S~d~eiLyW~~~~~~~~ts-------~kDvkW  534 (626)
T KOG2106|consen  468 DNHIYIYRVSANG-----RKYSRVGKCSGSPITHLDWSSDSQFL-VSNSGDYEILYWKPSECKQITS-------VKDVKW  534 (626)
T ss_pred             CCeEEEEEECCCC-----cEEEEeeeecCceeEEeeecCCCceE-EeccCceEEEEEccccCcccce-------ecceee
Confidence            9999999987742     22222 23355899999999999987 5999999999995443333322       111111


Q ss_pred             cCc-c-hh-----ccccceeeeeEeeCc-cceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          340 SSD-M-LD-----IETKLLTSIGMHLIH-GRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       340 s~d-~-~~-----~~~~~~~~~~~~~~~-~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      ... + ..     ...+.... .+...| .+.+++|..-|+|++|...-   .+...+-.++.+|++.|++|+|+|
T Consensus       535 ~t~~c~lGF~v~g~s~~t~i~-a~~rs~~~~~lA~gdd~g~v~lf~yPc---~s~rA~~he~~ghs~~vt~V~Fl~  606 (626)
T KOG2106|consen  535 ATYTCTLGFEVFGGSDGTDIN-AVARSHCEKLLASGDDFGKVHLFSYPC---SSPRAPSHEYGGHSSHVTNVAFLC  606 (626)
T ss_pred             eeeEEEEEEEEecccCCchHH-HhhhhhhhhhhhccccCceEEEEcccc---CCCcccceeeccccceeEEEEEee
Confidence            100 0 00     00000000 011112 45667888888999998752   123455678999999999999987

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=7e-23  Score=177.25  Aligned_cols=211  Identities=17%  Similarity=0.256  Sum_probs=172.7

Q ss_pred             eCCCceEEEEEeCCCC-eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899           81 IHPGEVNRIRELPQNS-KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA  159 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  159 (407)
                      -|.++|.+++|+|... +++|+|+.-|+|-+||+.+.+..                                        
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d----------------------------------------  223 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD----------------------------------------  223 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc----------------------------------------
Confidence            4899999999999666 79999999999999999732211                                        


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                                              ..-+..+..|..+|.+|.|+|.....+++.+.||+|++-|++......+.......
T Consensus       224 ------------------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~  279 (498)
T KOG4328|consen  224 ------------------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN  279 (498)
T ss_pred             ------------------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence                                    11234455799999999999998889999999999999999987643333443345


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ..+..++|+. +...++.|+.=|...+||.|+.     +.....+.-|+..|.+|+++|-.+++|||+|.|++.+|||++
T Consensus       280 ~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~-----~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R  353 (498)
T KOG4328|consen  280 IWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTD-----GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR  353 (498)
T ss_pred             eeeeeccccC-CCccEEEeecccceEEEEeecC-----CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence            5677888988 6667777777789999999994     344666777889999999999999999999999999999999


Q ss_pred             CCCcccc----cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          320 KIGEKQD----YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       320 ~~~~~~~----~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +......    ...|..+|.++.|||+                  +..|++.+.|..|||||..
T Consensus       354 ~l~~K~sp~lst~~HrrsV~sAyFSPs------------------~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  354 QLRGKASPFLSTLPHRRSVNSAYFSPS------------------GGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hhcCCCCcceecccccceeeeeEEcCC------------------CCceEeeccCCceEEeecc
Confidence            7655443    3468899999999998                  6669999999999999984

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=3.5e-22  Score=184.62  Aligned_cols=320  Identities=17%  Similarity=0.184  Sum_probs=232.5

Q ss_pred             ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc
Q 046899           46 PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA  125 (407)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  125 (407)
                      ..+.-|+..+..+||...        .........++...|+++.-+| -=+.+|.|..+|+|.++++..++.+.++...
T Consensus       173 NKIvvGs~~G~lql~Nvr--------t~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d  243 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVR--------TGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQD  243 (910)
T ss_pred             eeEEEeecCCcEEEEEec--------cCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEcc
Confidence            346677888889999221        1123445557889999999888 6779999999999999999998877666543


Q ss_pred             CCCCC------CC---------CCcEEEEeccccccc---cccCCCCCcccccCCCCCccccccCCCCCCCCCCCC--c-
Q 046899          126 ADSHP------DL---------DQSVVLWSIQDHVSA---LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS--I-  184 (407)
Q Consensus       126 ~~~~~------~~---------d~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~-  184 (407)
                      ...+.      ++         .|.+.+||++.....   ...+.+++.....-.-...+++++.|..+++|-.++  + 
T Consensus       244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~  323 (910)
T KOG1539|consen  244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV  323 (910)
T ss_pred             ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence            22221      11         689999999987442   234444555554545556788889999998874443  3 


Q ss_pred             -CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--------------------------CCceee---
Q 046899          185 -GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS--------------------------TPAVKV---  234 (407)
Q Consensus       185 -~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------~~~~~~---  234 (407)
                       +.++.-.+|..+-.||.|.-.....+.+++.|++.+.+++....                          .|.+..   
T Consensus       324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~  403 (910)
T KOG1539|consen  324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF  403 (910)
T ss_pred             chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence             23444558999999999985444788888999888887764210                          000000   


Q ss_pred             ----------------------------------eccc------CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899          235 ----------------------------------EKAH------NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       235 ----------------------------------~~~~------~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~  274 (407)
                                                        ...+      ...+++++.++ .|++.+.|...|.|-+|+++.   
T Consensus       404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQS---  479 (910)
T KOG1539|consen  404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQS---  479 (910)
T ss_pred             ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEccc---
Confidence                                              0011      24578899999 999999999999999999999   


Q ss_pred             CCCCCceeee---cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc---------------------------
Q 046899          275 DGVGSPIHKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK---------------------------  324 (407)
Q Consensus       275 ~~~~~~~~~~---~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~---------------------------  324 (407)
                         +-...++   ..|..+|++++...-++ +++|++.+|.+++||+.+...+                           
T Consensus       480 ---Gi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  480 ---GIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             ---CeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence               7777777   57999999999987777 5579999999999998864422                           


Q ss_pred             --------------cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899          325 --------------QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL  390 (407)
Q Consensus       325 --------------~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~  390 (407)
                                    +.+.+|+..|++++||||                  +.+|++.+.|++||+||+.      ++.++
T Consensus       556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~D------------------grWlisasmD~tIr~wDlp------t~~lI  611 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPD------------------GRWLISASMDSTIRTWDLP------TGTLI  611 (910)
T ss_pred             eeEEEEEchhhhhhHHhhccccceeeeEeCCC------------------CcEEEEeecCCcEEEEecc------Cccee
Confidence                          224567777788888887                  9999999999999999998      67666


Q ss_pred             HHHhhcccceeEeeccC
Q 046899          391 AELDKFKSHIFGCDKSC  407 (407)
Q Consensus       391 ~~~~~h~~~v~~~~~s~  407 (407)
                      .-+. -....+++.|||
T Consensus       612 D~~~-vd~~~~sls~SP  627 (910)
T KOG1539|consen  612 DGLL-VDSPCTSLSFSP  627 (910)
T ss_pred             eeEe-cCCcceeeEECC
Confidence            5544 344566777775

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.3e-23  Score=173.93  Aligned_cols=204  Identities=15%  Similarity=0.286  Sum_probs=171.3

Q ss_pred             ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC---
Q 046899          149 AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR---  225 (407)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~---  225 (407)
                      .++.+++.-.+.......+.+++.|.+.+||.++++.++..|.+|.+.|++|+|++.+ .++++++.|++.+||...   
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~  223 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNW  223 (481)
T ss_pred             cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcC
Confidence            3344444434444445678889999999999999999999999999999999999999 899999999999999621   


Q ss_pred             ---CCC--------------------------------CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          226 ---SGS--------------------------------TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       226 ---~~~--------------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                         +..                                ..++..+.+|.+.|.+..|-. ++..+++++.|.+..+||++
T Consensus       224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVE  302 (481)
T KOG0300|consen  224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVE  302 (481)
T ss_pred             cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceeeeec
Confidence               100                                013455678999999999988 89999999999999999999


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC-CcccccccCCCcccCCCCcCcchhcccc
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI-GEKQDYGELKYPIIHPAYSSDMLDIETK  349 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~  349 (407)
                      +      ++++..+.+|....+.+.-+|..+ |+++++.|.+.++||++.. ..+..|.+|...|+++.|..        
T Consensus       303 t------ge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~--------  367 (481)
T KOG0300|consen  303 T------GEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT--------  367 (481)
T ss_pred             c------CceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEec--------
Confidence            9      999999999999999999999988 5679999999999999842 34567889999998888844        


Q ss_pred             ceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          350 LLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                                 +..|++|+.|.+|+|||+..
T Consensus       368 -----------dd~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  368 -----------DDRVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             -----------CCceeecCCCceEEEeeecc
Confidence                       56899999999999999973

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2.3e-22  Score=173.52  Aligned_cols=168  Identities=20%  Similarity=0.333  Sum_probs=145.7

Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      .+|+..|..++|+..-.++||+||.|.+|++||+.+++  +..++..|...|.++.|+|..+.+|++|+.|++|.+.|.|
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            46999999999998877899999999999999999999  6778888999999999999999999999999999999999


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC-CcccccccCCCcccCCCCcCcchhcccc
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI-GEKQDYGELKYPIIHPAYSSDMLDIETK  349 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~  349 (407)
                      .+.     ..-..++ -.+.|-.++|.|.....|.++..||+++-+|+++. +.+-++..|..+|.+++++.-.      
T Consensus       318 ~~~-----~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~------  385 (463)
T KOG0270|consen  318 DPS-----NSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT------  385 (463)
T ss_pred             Ccc-----ccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCC------
Confidence            632     2333343 35789999999999888889999999999999987 6667889999999999887652      


Q ss_pred             ceeeeeEeeCccceeeeEEEeeeEEEeecccccc
Q 046899          350 LLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY  383 (407)
Q Consensus       350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~  383 (407)
                                 .+.+++++.|+.|++|++.....
T Consensus       386 -----------p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  386 -----------PGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             -----------CcceeeccccceEEEEeecCCCC
Confidence                       56788999999999999975444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=1.2e-21  Score=162.71  Aligned_cols=286  Identities=14%  Similarity=0.236  Sum_probs=197.6

Q ss_pred             eEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCC
Q 046899           86 VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANS  165 (407)
Q Consensus        86 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (407)
                      ...+.|+| +|.-|++-+.|..+++|++...-............     ....+....+...+.... ...+....+...
T Consensus        52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~-----~~~~~r~~eg~tvydy~w-Ys~M~s~qP~t~  124 (406)
T KOG2919|consen   52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS-----KHLSYRYQEGETVYDYCW-YSRMKSDQPSTN  124 (406)
T ss_pred             hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccc-----cceeEEeccCCEEEEEEe-eeccccCCCccc
Confidence            34677999 88999999999999999987542111111100000     000000011100000000 001111223334


Q ss_pred             ccccccCCCCCCCCCCCCcCceeeEee--ccc---CEEEEEECCCCCcEEEEEeCCCcEEEEEc-CCCCCCceeee----
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKYLG--HED---TVEDVQFCPSSAQEFCSVGDDSCLILWDA-RSGSTPAVKVE----  235 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~---~v~~l~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~----  235 (407)
                      ..++.+.+.-|.+||.-+++....+.+  |..   ...+++|+|+| .+|++| ....|++||+ |.+..-.....    
T Consensus       125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~  202 (406)
T KOG2919|consen  125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG  202 (406)
T ss_pred             eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence            567788899999999999998887764  443   44689999999 566655 5789999999 55542222222    


Q ss_pred             -cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          236 -KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       236 -~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                       .+..+.+.|++|+|.+...++.|+...++-||.-..      +.++..+.+|.+.|+.++|+++|..++.-+-.|..|-
T Consensus       203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl  276 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL  276 (406)
T ss_pred             cccccceeeeeeccCCCCcceeeecccceeeeEecCC------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence             234678899999998888999999999999998877      7899999999999999999999999984444688999


Q ss_pred             EEeCCCCCcc-cccccCCC-cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHH
Q 046899          315 IWDHEKIGEK-QDYGELKY-PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAE  392 (407)
Q Consensus       315 vwd~~~~~~~-~~~~~~~~-~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~  392 (407)
                      .||++..+.+ -.+..|.. .-..+             .   |-+...++.+++|+.||.|++||+..     -++.+..
T Consensus       277 ~WDiR~~~~pv~~L~rhv~~TNQRI-------------~---FDld~~~~~LasG~tdG~V~vwdlk~-----~gn~~sv  335 (406)
T KOG2919|consen  277 CWDIRYSRDPVYALERHVGDTNQRI-------------L---FDLDPKGEILASGDTDGSVRVWDLKD-----LGNEVSV  335 (406)
T ss_pred             EEeehhccchhhhhhhhccCccceE-------------E---EecCCCCceeeccCCCccEEEEecCC-----CCCcccc
Confidence            9999975543 33333322 11112             2   55556688999999999999999983     3778999


Q ss_pred             HhhcccceeEeeccC
Q 046899          393 LDKFKSHIFGCDKSC  407 (407)
Q Consensus       393 ~~~h~~~v~~~~~s~  407 (407)
                      +..|+..|+.|++.|
T Consensus       336 ~~~~sd~vNgvslnP  350 (406)
T KOG2919|consen  336 TGNYSDTVNGVSLNP  350 (406)
T ss_pred             cccccccccceecCc
Confidence            999999999999865

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.6e-21  Score=160.88  Aligned_cols=267  Identities=16%  Similarity=0.306  Sum_probs=181.2

Q ss_pred             EEEEe-ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEe-CCCCeEEEEeeCCCcEEEEeCcCCCC
Q 046899           41 SCRWG-PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIREL-PQNSKIVATHTDSPDVLIWDVEAQPN  118 (407)
Q Consensus        41 s~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~tg~~dg~i~vwd~~~~~~  118 (407)
                      ++++. ..+++.+.|.+++||   ++ ............-..|.+.|..|.|. |.-|+.+|+++.|++++||.-.... 
T Consensus        20 s~D~~GRRmAtCSsDq~vkI~---d~-~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~-   94 (361)
T KOG2445|consen   20 SFDFYGRRMATCSSDQTVKIW---DS-TSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS-   94 (361)
T ss_pred             eecccCceeeeccCCCcEEEE---ec-cCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc-
Confidence            45553 358999999999999   22 22223333334444699999999995 5679999999999999999864211 


Q ss_pred             cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEE
Q 046899          119 RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVE  198 (407)
Q Consensus       119 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~  198 (407)
                         ...+          -+-|                                             ....++......|+
T Consensus        95 ---~~~~----------~~~W---------------------------------------------v~~ttl~DsrssV~  116 (361)
T KOG2445|consen   95 ---EEAH----------GRRW---------------------------------------------VRRTTLVDSRSSVT  116 (361)
T ss_pred             ---cccc----------ccee---------------------------------------------EEEEEeecCCccee
Confidence               1111          0111                                             12345556778999


Q ss_pred             EEEECCCC-CcEEEEEeCCCcEEEEEcCCCC----CCceeeec-------ccCcceEEEEecCC--CCCEEEEEeCC---
Q 046899          199 DVQFCPSS-AQEFCSVGDDSCLILWDARSGS----TPAVKVEK-------AHNADIHCVDWNPH--DVNLILTGSAD---  261 (407)
Q Consensus       199 ~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-------~~~~~v~~l~~~~~--~~~~l~tg~~d---  261 (407)
                      .++|.|.. +-.||+++.||.||||+.-...    .++...+.       .+..+..|+.|+|.  ...+||.|+.+   
T Consensus       117 DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~  196 (361)
T KOG2445|consen  117 DVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAP  196 (361)
T ss_pred             EEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCc
Confidence            99999963 2679999999999999876542    11112222       35667789999872  24678888866   


Q ss_pred             --CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC---CCEEEEeeCCCeEEEEeCCCCC--------------
Q 046899          262 --NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGILNIWDHEKIG--------------  322 (407)
Q Consensus       262 --g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~ll~s~~~d~~i~vwd~~~~~--------------  322 (407)
                        +.++||......+  ....+.++.+|..+|++++|.|+-   -+++|+++.|| |+||.++...              
T Consensus       197 ~~~~~~Iye~~e~~r--Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~  273 (361)
T KOG2445|consen  197 HLNKVKIYEYNENGR--KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLM  273 (361)
T ss_pred             cccceEEEEecCCcc--eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCc
Confidence              4788987655221  156677888999999999999963   35789999999 9999998422              


Q ss_pred             ------cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          323 ------EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       323 ------~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                            .+..+..|..+|+.+.|+-.                  +-.|.+.+.||+||+|..+   |.+...|+..+.
T Consensus       274 ~~l~v~~vs~~~~H~~~VWrv~wNmt------------------GtiLsStGdDG~VRLWkan---y~n~~kC~sv~~  330 (361)
T KOG2445|consen  274 TDLPVEKVSELDDHNGEVWRVRWNMT------------------GTILSSTGDDGCVRLWKAN---YNNLWKCTSVLK  330 (361)
T ss_pred             cccceEEeeeccCCCCceEEEEEeee------------------eeEEeecCCCceeeehhhh---hhhhheeeeEEe
Confidence                  11223445555555544322                  5567788999999999876   333455555444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2.1e-21  Score=168.21  Aligned_cols=291  Identities=14%  Similarity=0.181  Sum_probs=196.4

Q ss_pred             CCCeeEEEEee-----cccccCccceEEEEeecccC-cccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899           36 VWPSLSCRWGP-----QLEQATYKNRQRLYLSEQFN-EEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL  109 (407)
Q Consensus        36 ~~p~~s~~~~~-----~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~  109 (407)
                      +-+..+.+|.|     .++.|.-.|.+=+|   ++. ++.+.+..  ....+|.++|.+|.|+|.+...+.+.++||+||
T Consensus       186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~W---n~~~~~~d~d~v--~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  186 DRRITSLAFHPTENRKLVAVGDKGGQVGLW---NFGTQEKDKDGV--YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             ccceEEEEecccCcceEEEEccCCCcEEEE---ecCCCCCccCce--EEeccCCccccceEecCCChhheeeeccCceee
Confidence            44666789988     37778888899999   553 22223222  333479999999999999999999999999999


Q ss_pred             EEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc-ee
Q 046899          110 IWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA-RG  188 (407)
Q Consensus       110 vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~  188 (407)
                      +=|++.......+...       +..+.+.+++                 ........+.+..-|...+||...... ..
T Consensus       261 ~~D~~~~i~e~v~s~~-------~d~~~fs~~d-----------------~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~  316 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLD-------TDNIWFSSLD-----------------FSAESRSVLFGDNVGNFNVIDLRTDGSEYE  316 (498)
T ss_pred             eeeecchhhHHHhhcC-------ccceeeeecc-----------------ccCCCccEEEeecccceEEEEeecCCccch
Confidence            9999876432222111       0111111111                 001111233444555667777766554 55


Q ss_pred             eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc--eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA--VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                      .+.-|...|..++++|..+.+|+++|.|++++|||+|+.....  ......|...|.+..|+|.+++ |+|-+.|..|+|
T Consensus       317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv  395 (498)
T KOG4328|consen  317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRV  395 (498)
T ss_pred             hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEE
Confidence            5666888999999999999999999999999999999755222  3455689999999999995555 899999999999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCC------CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC-cccCC-C
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSA------AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY-PIIHP-A  338 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~------~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~-~  338 (407)
                      ||..-....  ..++.++. |..      .....+|.|+.. +++.|-.-..|-|+|-+.++.+..+..... .|.++ .
T Consensus       396 ~dss~~sa~--~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~  471 (498)
T KOG4328|consen  396 FDSSCISAK--DEPLGTIP-HNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNE  471 (498)
T ss_pred             eeccccccc--CCccceee-ccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCcccccccccee
Confidence            998411100  45555554 322      345678999888 567998888999999888765655443222 33333 2


Q ss_pred             CcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeec
Q 046899          339 YSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRM  378 (407)
Q Consensus       339 ~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~  378 (407)
                      |.|                  -+. .++.++..|.|+||--
T Consensus       472 ~HP------------------~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  472 FHP------------------MRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ecc------------------cccceeccCCccceEEEEec
Confidence            333                  255 3444455668888854

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.6e-21  Score=169.41  Aligned_cols=231  Identities=18%  Similarity=0.240  Sum_probs=182.9

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      ..--.++|.+++-+| .|.+|+.|+..|.|.+|.+.++..+..+..|-..+.+                          +
T Consensus        77 ~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITc--------------------------L  129 (476)
T KOG0646|consen   77 YIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITC--------------------------L  129 (476)
T ss_pred             hcccccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeE--------------------------E
Confidence            334678999999887 9999999989999999999999888777666544322                          2


Q ss_pred             ccCCCCCccccccCCCCCCCCCC---------CCcCceeeEeecccCEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCC
Q 046899          159 ASGGANSKNASKSGGNGDKPLES---------PSIGARGKYLGHEDTVEDVQFCPSS-AQEFCSVGDDSCLILWDARSGS  228 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~---------~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~  228 (407)
                      .+...++.+++++.||.+.+|.+         .+-+++..+..|+-+|+++...+.+ ...++++|.|.++++||+..+.
T Consensus       130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~  209 (476)
T KOG0646|consen  130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV  209 (476)
T ss_pred             EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence            22233345667777777777743         1446778888999999999987653 2479999999999999999987


Q ss_pred             CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC--CC--------CCCCceeeecCCCC--CEEEEEE
Q 046899          229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT--SD--------GVGSPIHKFEGHSA--AVLCVQW  296 (407)
Q Consensus       229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~--------~~~~~~~~~~~h~~--~v~~v~~  296 (407)
                        .+.++ ..+..+.+++.+| .++.++.|+.+|.|.+.++....  +.        ..+..+..+.+|..  .|+|++.
T Consensus       210 --LLlti-~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai  285 (476)
T KOG0646|consen  210 --LLLTI-TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI  285 (476)
T ss_pred             --eeEEE-ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence              44443 5678899999999 88999999999999999886643  11        11455667788988  9999999


Q ss_pred             cCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899          297 SPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSS  341 (407)
Q Consensus       297 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~  341 (407)
                      +-||. +|++|+.||+|+|||+.+.+.++++....++|+.+.+.|
T Consensus       286 s~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  286 STDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             ecCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            99999 557999999999999999999988887888888887733

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6e-21  Score=158.04  Aligned_cols=234  Identities=16%  Similarity=0.248  Sum_probs=173.5

Q ss_pred             CeeEEEEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCC-CeEEEEeeCCCcEEEEeCcCC
Q 046899           38 PSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQN-SKIVATHTDSPDVLIWDVEAQ  116 (407)
Q Consensus        38 p~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~tg~~dg~i~vwd~~~~  116 (407)
                      .++.|+| |.+++|+.|.+++||-     ..   ...+...++.|.+.|+++.|.++- .+.|++|+.||.|.+|+...-
T Consensus        47 tavAVs~-~~~aSGssDetI~IYD-----m~---k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   47 TALAVSG-PYVASGSSDETIHIYD-----MR---KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             eEEEecc-eeEeccCCCCcEEEEe-----cc---chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence            3334444 7899999999999991     11   123344566799999999998732 237999999999999999998


Q ss_pred             CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC
Q 046899          117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT  196 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~  196 (407)
                      .++..+.+|...+.++                       ...+.++   ..++.+.|+.++.|++-.++.-..+.- ...
T Consensus       118 ~~~~slK~H~~~Vt~l-----------------------siHPS~K---LALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~  170 (362)
T KOG0294|consen  118 ELLKSLKAHKGQVTDL-----------------------SIHPSGK---LALSVGGDQVLRTWNLVRGRVAFVLNL-KNK  170 (362)
T ss_pred             EEeeeeccccccccee-----------------------EecCCCc---eEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence            8888888876553321                       1122332   256677888899999887776544432 223


Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG  276 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~  276 (407)
                      .+.+.|+|.| .+|+.++. ..|-+|.+.+-.  ..... .....+.|+.|.  ++..+++|+.|+.|++||...     
T Consensus       171 at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~--v~~~i-~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds-----  238 (362)
T KOG0294|consen  171 ATLVSWSPQG-DHFVVSGR-NKIDIYQLDNAS--VFREI-ENPKRILCATFL--DGSELLVGGDNEWISLKDTDS-----  238 (362)
T ss_pred             ceeeEEcCCC-CEEEEEec-cEEEEEecccHh--Hhhhh-hccccceeeeec--CCceEEEecCCceEEEeccCC-----
Confidence            3459999999 67777765 478999988765  22222 334557777776  578999999999999999998     


Q ss_pred             CCCceeeecCCCCCEEEEEE-c-CCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          277 VGSPIHKFEGHSAAVLCVQW-S-PDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       277 ~~~~~~~~~~h~~~v~~v~~-~-~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                       ..++..+.+|...|-++.+ . |++. +|+|+|.||.|+|||++..
T Consensus       239 -~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  239 -DTPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             -CccceeeecchhheeeeEEEecCCce-EEEEeccCceEEEEEcccc
Confidence             7999999999999999984 3 4455 5689999999999999975

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=6.2e-21  Score=157.46  Aligned_cols=245  Identities=15%  Similarity=0.258  Sum_probs=183.1

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      +|.+-|+++.|.+ -|+.+|||+.|++|+|||..+..                                           
T Consensus        11 ~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s-------------------------------------------   46 (361)
T KOG2445|consen   11 GHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDS-------------------------------------------   46 (361)
T ss_pred             CCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCC-------------------------------------------
Confidence            6999999999998 89999999999999999985432                                           


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEEC-CCCCcEEEEEeCCCcEEEEEcCCCC-------CCce
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGS-------TPAV  232 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~  232 (407)
                                           .+..+....+.|.+.|..+.|- |.-++.+|+++.|+++.||.-...+       ....
T Consensus        47 ---------------------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~  105 (361)
T KOG2445|consen   47 ---------------------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR  105 (361)
T ss_pred             ---------------------CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEE
Confidence                                 1112345667899999999994 4434899999999999999863221       1233


Q ss_pred             eeecccCcceEEEEecCC-CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-------CCCCCEEEEEEcCCC--CC
Q 046899          233 KVEKAHNADIHCVDWNPH-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-------GHSAAVLCVQWSPDK--SS  302 (407)
Q Consensus       233 ~~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~h~~~v~~v~~~~~~--~~  302 (407)
                      .++....+.|+.+.|.|. -|-.||+++.||.+|||+.-.+.....+....+++       .+..+..|+.|+|..  +.
T Consensus       106 ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p  185 (361)
T KOG2445|consen  106 TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEP  185 (361)
T ss_pred             EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCc
Confidence            455667789999999983 36789999999999999987655444455555555       467789999999753  33


Q ss_pred             EEEEeeCC-----CeEEEEeCCCCC----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCc-cceeeeEEEeee
Q 046899          303 VFGSSAED-----GILNIWDHEKIG----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH-GRLLVCLTMVKV  372 (407)
Q Consensus       303 ll~s~~~d-----~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~  372 (407)
                      +||.|+.+     +.+.||......    .+.++.++..||+.++|.|++               |. -..|++++.|| 
T Consensus       186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~---------------Gr~y~~lAvA~kDg-  249 (361)
T KOG2445|consen  186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI---------------GRSYHLLAVATKDG-  249 (361)
T ss_pred             eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc---------------CCceeeEEEeecCc-
Confidence            66777755     489999876543    456788999999999999983               11 23688999999 


Q ss_pred             EEEeeccccc--------------cCChHHHHHHHhhcccceeEeecc
Q 046899          373 LEIWRMIDLI--------------YRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       373 i~iwd~~~~~--------------~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                      |+||++....              ..-.-+.+..+.+|++.|+.+.|.
T Consensus       250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN  297 (361)
T KOG2445|consen  250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN  297 (361)
T ss_pred             EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence            9999997311              011123456788999999998874

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=4.2e-21  Score=157.53  Aligned_cols=290  Identities=18%  Similarity=0.222  Sum_probs=200.5

Q ss_pred             CeeEEEE--eecccccCccceEEEEeec---ccCcccCCccee----eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcE
Q 046899           38 PSLSCRW--GPQLEQATYKNRQRLYLSE---QFNEEARSPFVK----KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDV  108 (407)
Q Consensus        38 p~~s~~~--~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i  108 (407)
                      -++.++.  ...+.+|..|+.+.+|-.+   +|..+.-....+    .....+|+-.|..+.|.|.+.-++.+++.|.++
T Consensus        47 NsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtl  126 (397)
T KOG4283|consen   47 NSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTL  126 (397)
T ss_pred             ceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceE
Confidence            3444444  2358899999999999554   222221111122    223345888999999999888899999999999


Q ss_pred             EEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee
Q 046899          109 LIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG  188 (407)
Q Consensus       109 ~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~  188 (407)
                      +|||.++.+....+                 ..+.....-.       ..+...-...+++|..+-.+++-|+.++..-.
T Consensus       127 KVWDtnTlQ~a~~F-----------------~me~~VYsha-------mSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  127 KVWDTNTLQEAVDF-----------------KMEGKVYSHA-------MSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             EEeecccceeeEEe-----------------ecCceeehhh-------cChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            99999987544332                 1111111101       11111112346678888899999999999999


Q ss_pred             eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-------------CCCceeeecccCcceEEEEecCCCCCEE
Q 046899          189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG-------------STPAVKVEKAHNADIHCVDWNPHDVNLI  255 (407)
Q Consensus       189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l  255 (407)
                      ++.+|.+.|.++.|+|.....|++|+.||.|++||+|.-             ..|..+.-.+|.+.|+.++|.. ++.++
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l  261 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYL  261 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhh
Confidence            999999999999999998789999999999999999854             1233344567889999999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCCceeeec--CCCC----CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          256 LTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GHSA----AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       256 ~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~h~~----~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                      ++++.|..+++|+..+...     .+..+-  .|..    .+. ++ +-+.. +|+---.|+.+.++.+-.+..++.+..
T Consensus       262 ~~~gtd~r~r~wn~~~G~n-----tl~~~g~~~~n~~~~~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sgs~ir~l~~  333 (397)
T KOG4283|consen  262 ASCGTDDRIRVWNMESGRN-----TLREFGPIIHNQTTSFAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEGSFVRRLST  333 (397)
T ss_pred             hhccCccceEEeecccCcc-----cccccccccccccccceEE-Ee-ecccc-eEEEEecCCeEEEEEccCceEEEeeec
Confidence            9999999999999877221     111110  0111    111 22 22222 333444568888888888888888888


Q ss_pred             CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          330 LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       330 ~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      |...+.+.+|-|+                  =....+|..|+.|.-|-.
T Consensus       334 h~k~i~c~~~~~~------------------fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  334 HLKRINCAAYRPD------------------FEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ccceeeEEeecCc------------------hhhhhccccCCccccccc
Confidence            8777777777666                  234557778888888865

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=4.1e-22  Score=177.86  Aligned_cols=274  Identities=18%  Similarity=0.213  Sum_probs=197.0

Q ss_pred             ceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC-----CCCCCC---------------
Q 046899           73 FVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA-----DSHPDL---------------  132 (407)
Q Consensus        73 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~---------------  132 (407)
                      ........||++.|.+|+..| .|.+||+|+.||+||||.+.++.|+..+.--.     .+.+..               
T Consensus       390 t~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI  468 (733)
T ss_pred             ceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence            333456668999999999999 99999999999999999999998775443211     000000               


Q ss_pred             ---------------------------CCcEEEEecccc------ccccccCCCCCcccccCCCCCcccc---ccCCCCC
Q 046899          133 ---------------------------DQSVVLWSIQDH------VSALAAEPGSAKSTASGGANSKNAS---KSGGNGD  176 (407)
Q Consensus       133 ---------------------------d~~i~~w~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i  176 (407)
                                                 ++.+..|.-...      .+....++..+..+....-..++++   .+....+
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence                                       445556643311      1222223333333333233333443   3344566


Q ss_pred             CCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE
Q 046899          177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL  256 (407)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  256 (407)
                      .|.++.....+..++...+.|.++.|+|..+ +|+.++ ...|++||+....  .++.+......|.+++.+| .|.-|+
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqe--lvKkL~tg~kwiS~msihp-~GDnli  623 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQE--LVKKLLTGSKWISSMSIHP-NGDNLI  623 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHH--HHHHHhcCCeeeeeeeecC-CCCeEE
Confidence            6777777776667766778899999999984 555554 3789999998766  6667767778899999999 888899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC---------Cccccc
Q 046899          257 TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI---------GEKQDY  327 (407)
Q Consensus       257 tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~---------~~~~~~  327 (407)
                      .|+.|+.+..||+...     .++.++++.|...|++|+||+.-+ |||+|+.||++.|+.-.-.         -.+..+
T Consensus       624 ~gs~d~k~~WfDldls-----skPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L  697 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLS-----SKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL  697 (733)
T ss_pred             EecCCCeeEEEEcccC-----cchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence            9999999999999863     478899999999999999999988 7899999999999964321         112344


Q ss_pred             ccCCCc----ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          328 GELKYP----IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       328 ~~~~~~----v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                      .+|...    |..+.|.|.                  ..++++++.||+|++|
T Consensus       698 ~gH~~~~~~gVLd~~wHP~------------------qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  698 RGHEKTNDLGVLDTIWHPR------------------QPWLFSAGADGTIRLF  732 (733)
T ss_pred             cCceeecccceEeecccCC------------------CceEEecCCCceEEee
Confidence            555433    666667665                  7889999999999998

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.9e-22  Score=192.69  Aligned_cols=260  Identities=18%  Similarity=0.316  Sum_probs=200.9

Q ss_pred             cceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe---EEEEeeCCCcEEEEeCcCCCCcccccCcCCCCC
Q 046899           54 KNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK---IVATHTDSPDVLIWDVEAQPNRHAVLGAADSHP  130 (407)
Q Consensus        54 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  130 (407)
                      +.+..||   .++..+.....+....+.-...-+.|+|.+....   +||.|..||.|-+||......     .      
T Consensus        38 ~~slEif---eld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----~------  103 (1049)
T KOG0307|consen   38 SASLEIF---ELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----N------  103 (1049)
T ss_pred             cccccee---eecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----C------
Confidence            3345566   3333333333344555556678899999883333   599999999999999875300     0      


Q ss_pred             CCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEE
Q 046899          131 DLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEF  210 (407)
Q Consensus       131 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  210 (407)
                                                                         .....+.++..|++.|..+.|++.++++|
T Consensus       104 ---------------------------------------------------~~~~~la~~~~h~G~V~gLDfN~~q~nlL  132 (1049)
T KOG0307|consen  104 ---------------------------------------------------ASEEVLATKSKHTGPVLGLDFNPFQGNLL  132 (1049)
T ss_pred             ---------------------------------------------------cchHHHhhhcccCCceeeeeccccCCcee
Confidence                                                               11234556678999999999999998899


Q ss_pred             EEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC-
Q 046899          211 CSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA-  289 (407)
Q Consensus       211 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~-  289 (407)
                      |+|+.||.|.|||+.+.+.+.........+.|.+++|+......|++++.+|++.|||+|.      .+++-.+..|.. 
T Consensus       133 ASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~------~~pii~ls~~~~~  206 (1049)
T KOG0307|consen  133 ASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK------KKPIIKLSDTPGR  206 (1049)
T ss_pred             eccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC------CCcccccccCCCc
Confidence            9999999999999998775433323345788999999997788999999999999999998      677777776544 


Q ss_pred             -CEEEEEEcCCCCCEEEEeeCC---CeEEEEeCCCCCc-ccccccCCCcccCCCCcCcchhccccceeeeeEeeCcccee
Q 046899          290 -AVLCVQWSPDKSSVFGSSAED---GILNIWDHEKIGE-KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL  364 (407)
Q Consensus       290 -~v~~v~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i  364 (407)
                       .+..++|||+...-+++++.|   -.|.+||++.... ++.+.+|...|.++.|++-                 ...++
T Consensus       207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~-----------------D~~ll  269 (1049)
T KOG0307|consen  207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ-----------------DPRLL  269 (1049)
T ss_pred             cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC-----------------Cchhh
Confidence             588999999986555566655   3699999986544 5677899999999999764                 14688


Q ss_pred             eeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          365 VCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       365 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      ++..-|+.|.+|+.+      ++|.+..+..-.+.++.|.|++
T Consensus       270 lSsgkD~~ii~wN~~------tgEvl~~~p~~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  270 LSSGKDNRIICWNPN------TGEVLGELPAQGNWCFDVQWCP  306 (1049)
T ss_pred             hcccCCCCeeEecCC------CceEeeecCCCCcceeeeeecC
Confidence            899999999999999      8999999999888899999875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=5e-22  Score=173.60  Aligned_cols=289  Identities=16%  Similarity=0.183  Sum_probs=214.4

Q ss_pred             cchhhhhhhhccCceEEEeeeecccCCCeeEEEEeec--c--cccCccceEEEEeecccCcccCCcceeeEEEeeCCCce
Q 046899           11 SVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ--L--EQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEV   86 (407)
Q Consensus        11 ~~~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v   86 (407)
                      +.-+.+++|.-..-..-+-..++..+...-++.|...  +  ++...|..+++|     ......|........+-+ .-
T Consensus         9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~-----~K~g~~~~Vp~~~k~~gd-~~   82 (673)
T KOG4378|consen    9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIK-----EKDGKTPEVPRVRKLTGD-NA   82 (673)
T ss_pred             ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEe-----cccCCCCccceeeccccc-hH
Confidence            3456778888777666555556666655667888542  3  344555577777     223334444444443322 34


Q ss_pred             EEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCc
Q 046899           87 NRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSK  166 (407)
Q Consensus        87 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (407)
                      .|++... ...++++|+..+.|+|||++...+.+.+.+|...       |..-+                   ....+.+
T Consensus        83 ~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~st-------vt~v~-------------------YN~~Dey  135 (673)
T KOG4378|consen   83 FCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQST-------VTYVD-------------------YNNTDEY  135 (673)
T ss_pred             HHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcce-------eEEEE-------------------ecCCcce
Confidence            4444333 4479999999999999999977777777776533       22222                   3333456


Q ss_pred             cccccCCCCCCCCCCCCcCceeeEeec-ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLGH-EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV  245 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l  245 (407)
                      +++++..|.|.|....++.....+... ...|.-+.|+|....+|.+++.+|.|.+||+.... |.......|..+...|
T Consensus       136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-p~~~~~~~HsAP~~gi  214 (673)
T KOG4378|consen  136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-PIFHASEAHSAPCRGI  214 (673)
T ss_pred             eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-cccchhhhccCCcCcc
Confidence            888888999999988888877777644 44666899999987889999999999999998655 3455667899999999


Q ss_pred             EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc-c
Q 046899          246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE-K  324 (407)
Q Consensus       246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~-~  324 (407)
                      +|+|.+..+|++.+.|..|.+||.+.      .+....+. .+.+...++|.++|.+| +.|...|.|..||++..+. +
T Consensus       215 cfspsne~l~vsVG~Dkki~~yD~~s------~~s~~~l~-y~~Plstvaf~~~G~~L-~aG~s~G~~i~YD~R~~k~Pv  286 (673)
T KOG4378|consen  215 CFSPSNEALLVSVGYDKKINIYDIRS------QASTDRLT-YSHPLSTVAFSECGTYL-CAGNSKGELIAYDMRSTKAPV  286 (673)
T ss_pred             eecCCccceEEEecccceEEEeeccc------ccccceee-ecCCcceeeecCCceEE-EeecCCceEEEEecccCCCCc
Confidence            99998889999999999999999997      56666665 46789999999999965 7999999999999997655 4


Q ss_pred             cccccCCCcccCCCCcC
Q 046899          325 QDYGELKYPIIHPAYSS  341 (407)
Q Consensus       325 ~~~~~~~~~v~~~~~s~  341 (407)
                      .....|+..|++++|-+
T Consensus       287 ~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  287 AVRSAHDASVTRVAFQP  303 (673)
T ss_pred             eEeeecccceeEEEeee
Confidence            67788999999999844

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=3.2e-21  Score=157.84  Aligned_cols=208  Identities=21%  Similarity=0.392  Sum_probs=157.1

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      +-+.|.|+.|.| ++..||+-. |..|.+|++.....+ ..+....                                  
T Consensus       122 avg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~----------------------------------  165 (370)
T KOG1007|consen  122 AVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE----------------------------------  165 (370)
T ss_pred             HhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccc----------------------------------
Confidence            557999999999 777777766 789999999876542 2111100                                  


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                                                   -.++....++-+|+|. ..+.+++. .|+++..||+|+..+ ......+|.
T Consensus       166 -----------------------------s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~-~~sI~dAHg  214 (370)
T KOG1007|consen  166 -----------------------------SAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK-NNSIEDAHG  214 (370)
T ss_pred             -----------------------------cccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh-hcchhhhhc
Confidence                                         0024456677789983 22666665 589999999998764 345667899


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ..|..++|+|+...+|++|+.||.|++||.|..     ..++.++.+|...|++|.|+|....|+.|||.|..|.+|...
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-----k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-----KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCC-----CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            999999999988889999999999999999986     479999999999999999999988888999999999999765


Q ss_pred             CCC-----------------------------cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccce-eeeEEE
Q 046899          320 KIG-----------------------------EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRL-LVCLTM  369 (407)
Q Consensus       320 ~~~-----------------------------~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~-i~~~~~  369 (407)
                      .-.                             +++++..|...|++++||.-                  ..+ .++.|.
T Consensus       290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa------------------dPWiFASLSY  351 (370)
T KOG1007|consen  290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA------------------DPWIFASLSY  351 (370)
T ss_pred             ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC------------------CCeeEEEecc
Confidence            322                             12234455555666665543                  333 458899


Q ss_pred             eeeEEEeecc
Q 046899          370 VKVLEIWRMI  379 (407)
Q Consensus       370 d~~i~iwd~~  379 (407)
                      ||++-|=++.
T Consensus       352 DGRviIs~V~  361 (370)
T KOG1007|consen  352 DGRVIISSVP  361 (370)
T ss_pred             CceEEeecCC
Confidence            9999887765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=1.3e-21  Score=165.50  Aligned_cols=177  Identities=18%  Similarity=0.359  Sum_probs=146.9

Q ss_pred             CCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC-ceeeecccCcceEEEEecCCCCCEEEEEeC
Q 046899          182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP-AVKVEKAHNADIHCVDWNPHDVNLILTGSA  260 (407)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~  260 (407)
                      ...+++.++.+|...=+.|+|+|.....|++|..-+.|++|...++... -...+.+|...|-.++|+|....+|++|+.
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            3456788889999999999999954346888888889999999887632 123556799999999999988899999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC---CcccccccCCCcccCC
Q 046899          261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI---GEKQDYGELKYPIIHP  337 (407)
Q Consensus       261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~  337 (407)
                      ||+|+|||+|....   ..++. .++|.+-|+-|.|+.+.. +||+|+.||+++|||+++.   +.+..|..|..||+++
T Consensus       279 DgsIrIWDiRs~~~---~~~~~-~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi  353 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPK---KAAVS-TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI  353 (440)
T ss_pred             CceEEEEEecCCCc---cceeE-eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE
Confidence            99999999998321   13333 388999999999999888 7799999999999999864   4456888999999999


Q ss_pred             CCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          338 AYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       338 ~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      .|+|.-                 ...|++++.|..|.|||+.-
T Consensus       354 eW~p~e-----------------~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  354 EWHPHE-----------------DSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             Eecccc-----------------CceEEeccCCCcEEEEEeec
Confidence            998861                 55788889999999999963

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.5e-21  Score=158.80  Aligned_cols=230  Identities=14%  Similarity=0.162  Sum_probs=169.7

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      .|.. -+|+.|++ .|.+||.|+.||.|.|||+.+...                                          
T Consensus        22 d~~~-a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------   57 (405)
T KOG1273|consen   22 DNPL-AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRI------------------------------------------   57 (405)
T ss_pred             cCCc-cceEEecc-CcceeeeeccCCcEEEEEccccch------------------------------------------
Confidence            4444 78999999 999999999999999999987531                                          


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                                                -+.+.+|..+|.+++|+++| +.|++++.|..|.+||+..+..  ...+. ..+
T Consensus        58 --------------------------ar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~--l~rir-f~s  107 (405)
T KOG1273|consen   58 --------------------------ARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSP--LKRIR-FDS  107 (405)
T ss_pred             --------------------------hhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCc--eeEEE-ccC
Confidence                                      13455789999999999999 8999999999999999998862  22211 111


Q ss_pred             ceE-----------------------------------------------EEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          241 DIH-----------------------------------------------CVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       241 ~v~-----------------------------------------------~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      +|+                                               +..|++ .|+++++|...|.+.++|..+  
T Consensus       108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t--  184 (405)
T KOG1273|consen  108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAET--  184 (405)
T ss_pred             ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecch--
Confidence            111                                               122445 688999999999999999999  


Q ss_pred             CCCCCCceeeecCCC-CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccccee
Q 046899          274 SDGVGSPIHKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLT  352 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  352 (407)
                          .+++..++-.. ..|.++.++..|+.+ +.-+.|..||.|+++..-..    +.++.+....-   +.|+.+....
T Consensus       185 ----~e~vas~rits~~~IK~I~~s~~g~~l-iiNtsDRvIR~ye~~di~~~----~r~~e~e~~~K---~qDvVNk~~W  252 (405)
T KOG1273|consen  185 ----LECVASFRITSVQAIKQIIVSRKGRFL-IINTSDRVIRTYEISDIDDE----GRDGEVEPEHK---LQDVVNKLQW  252 (405)
T ss_pred             ----heeeeeeeechheeeeEEEEeccCcEE-EEecCCceEEEEehhhhccc----CccCCcChhHH---HHHHHhhhhh
Confidence                78888887655 789999999999976 58889999999998842111    00111000000   4455555555


Q ss_pred             eeeEeeCccceeeeEEEee-eEEEeeccccccCChHHHHHHHhhcccc-eeEeec
Q 046899          353 SIGMHLIHGRLLVCLTMVK-VLEIWRMIDLIYRPEEEVLAELDKFKSH-IFGCDK  405 (407)
Q Consensus       353 ~~~~~~~~~~~i~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~~~~  405 (407)
                      +..++++.+.+|++++.-. .++||.-.      .|.+++.+.|.++. ..+|+|
T Consensus       253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~------~GsLVKILhG~kgE~l~DV~w  301 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGSARAHALYIWEKS------IGSLVKILHGTKGEELLDVNW  301 (405)
T ss_pred             hheeecCCccEEEeccccceeEEEEecC------CcceeeeecCCchhheeeccc
Confidence            5577777789998887433 99999998      78899988888743 345554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=2.7e-20  Score=168.96  Aligned_cols=328  Identities=16%  Similarity=0.210  Sum_probs=234.3

Q ss_pred             cccccCccceEEEEeecccCccc------------CCcceeeE-----------EEeeCCCceEEEEEeCCCCeEEEEee
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEA------------RSPFVKKF-----------KTIIHPGEVNRIRELPQNSKIVATHT  103 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~------------~~~~~~~~-----------~~~~h~~~v~~l~~~~~~~~~l~tg~  103 (407)
                      .+++++-|..+|||.....+.+.            +.|.....           .+.||++-|+++.|+| .+..|++++
T Consensus       208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSAS  286 (764)
T KOG1063|consen  208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSAS  286 (764)
T ss_pred             EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecc
Confidence            37889999999999655222110            11221111           2348999999999999 777899999


Q ss_pred             CCCcEEEEeCcCCCCc-------ccccCcCC------CCCCC--------CCcEEEEecccc-----ccccccCCCCCcc
Q 046899          104 DSPDVLIWDVEAQPNR-------HAVLGAAD------SHPDL--------DQSVVLWSIQDH-----VSALAAEPGSAKS  157 (407)
Q Consensus       104 ~dg~i~vwd~~~~~~~-------~~~~~~~~------~~~~~--------d~~i~~w~~~~~-----~~~~~~~~~~~~~  157 (407)
                      .|.++.+|.-.+..-+       ..+.+...      ..++.        .|-.++|.....     ...+.++.+++..
T Consensus       287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~d  366 (764)
T KOG1063|consen  287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKD  366 (764)
T ss_pred             cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccccee
Confidence            9999999987765211       11111110      01111        677888873321     2344556666555


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCc----CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC------
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSI----GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG------  227 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~------  227 (407)
                      +.-.+-...+++.+.|.+-|++-....    ..+..-+-|...++|++|-+.. ..|++|.+...+|+|+....      
T Consensus       367 v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~  445 (764)
T KOG1063|consen  367 VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLM  445 (764)
T ss_pred             eeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHH
Confidence            555555567889999999998765411    1233344588899999998864 68999999999999976421      


Q ss_pred             -------------------------------------C-------------------------------CCceeeecccC
Q 046899          228 -------------------------------------S-------------------------------TPAVKVEKAHN  239 (407)
Q Consensus       228 -------------------------------------~-------------------------------~~~~~~~~~~~  239 (407)
                                                           .                               .|.+..+.+|.
T Consensus       446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG  525 (764)
T KOG1063|consen  446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG  525 (764)
T ss_pred             HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence                                                 0                               01222345788


Q ss_pred             cceEEEEecCCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          240 ADIHCVDWNPHDVNLILTGSADN-----SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      ..|.+++.+| +++++|+++...     .|++|+..+      ...+..+.+|+-.|+.++|+|||++|+ +.|.|+++.
T Consensus       526 yEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~------W~~~~~L~~HsLTVT~l~FSpdg~~LL-svsRDRt~s  597 (764)
T KOG1063|consen  526 YEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN------WLQVQELEGHSLTVTRLAFSPDGRYLL-SVSRDRTVS  597 (764)
T ss_pred             eeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc------hhhhheecccceEEEEEEECCCCcEEE-EeecCceEE
Confidence            9999999999 999999987654     589999999      888889999999999999999999885 999999999


Q ss_pred             EEeCCCCCcc----cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899          315 IWDHEKIGEK----QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL  390 (407)
Q Consensus       315 vwd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~  390 (407)
                      +|........    .....|..-|++..|+||                  +.+++++|-|.+|+||...+..    .+.+
T Consensus       598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd------------------e~~FaTaSRDK~VkVW~~~~~~----d~~i  655 (764)
T KOG1063|consen  598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD------------------EKYFATASRDKKVKVWEEPDLR----DKYI  655 (764)
T ss_pred             eeeeecccchhhhhccccccceEEEEcccCcc------------------cceeEEecCCceEEEEeccCch----hhhh
Confidence            9998643322    225678888999999998                  7779999999999999998421    1333


Q ss_pred             H--HHhhcccceeEeecc
Q 046899          391 A--ELDKFKSHIFGCDKS  406 (407)
Q Consensus       391 ~--~~~~h~~~v~~~~~s  406 (407)
                      .  ....+...|+++++-
T Consensus       656 ~~~a~~~~~~aVTAv~~~  673 (764)
T KOG1063|consen  656 SRFACLKFSLAVTAVAYL  673 (764)
T ss_pred             hhhchhccCCceeeEEee
Confidence            3  344688889998874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2e-20  Score=169.55  Aligned_cols=267  Identities=13%  Similarity=0.185  Sum_probs=205.4

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      -..+|.+|+|+. ..+.||.+-.||.|.+|++...-.... +.++....    -.-..|-                  ..
T Consensus        24 ~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drs----IE~L~W~------------------e~   80 (691)
T KOG2048|consen   24 KPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRS----IESLAWA------------------EG   80 (691)
T ss_pred             eccceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCc----eeeEEEc------------------cC
Confidence            467899999998 666799999999999999988654433 33322210    0112232                  11


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                          ..+.+.+.+|.|.-||+.++++...+....+.|.+++.+|.+ ..++.|++||.+..++...+.-.....+.-.++
T Consensus        81 ----~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s  155 (691)
T KOG2048|consen   81 ----GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS  155 (691)
T ss_pred             ----CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence                236778889999999999999999999889999999999998 789999999988888887666323334445568


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-------eecC-CCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-------KFEG-HSAAVLCVQWSPDKSSVFGSSAEDGI  312 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~  312 (407)
                      .|.+++|+| ++..+++|+.||.|++||...      +..+.       .+.. -..-|++|.|-.++.  +++|..-|+
T Consensus       156 RvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~------~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~G~  226 (691)
T KOG2048|consen  156 RVLSLSWNP-TGTKIAGGSIDGVIRIWDVKS------GQTLHIITMQLDRLSKREPTIVWSVLFLRDST--IASGDSAGT  226 (691)
T ss_pred             eEEEEEecC-CccEEEecccCceEEEEEcCC------CceEEEeeecccccccCCceEEEEEEEeecCc--EEEecCCce
Confidence            999999999 889999999999999999998      44444       1111 234589999987775  579999999


Q ss_pred             EEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHH
Q 046899          313 LNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAE  392 (407)
Q Consensus       313 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~  392 (407)
                      |++||...+..++.+..|+..|.+++-+++                  ++++++++.|+.|.-+......-  ++.....
T Consensus       227 V~FWd~~~gTLiqS~~~h~adVl~Lav~~~------------------~d~vfsaGvd~~ii~~~~~~~~~--~wv~~~~  286 (691)
T KOG2048|consen  227 VTFWDSIFGTLIQSHSCHDADVLALAVADN------------------EDRVFSAGVDPKIIQYSLTTNKS--EWVINSR  286 (691)
T ss_pred             EEEEcccCcchhhhhhhhhcceeEEEEcCC------------------CCeEEEccCCCceEEEEecCCcc--ceeeecc
Confidence            999999999999999999999888887776                  88999999999888888763211  1233445


Q ss_pred             HhhcccceeEeec
Q 046899          393 LDKFKSHIFGCDK  405 (407)
Q Consensus       393 ~~~h~~~v~~~~~  405 (407)
                      ...|..-|.+++-
T Consensus       287 r~~h~hdvrs~av  299 (691)
T KOG2048|consen  287 RDLHAHDVRSMAV  299 (691)
T ss_pred             ccCCcccceeeee
Confidence            5677777777653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.4e-20  Score=173.42  Aligned_cols=245  Identities=17%  Similarity=0.243  Sum_probs=183.2

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      .+.+.+.++.+|+|-   -..+...|.....    |...|.+++.   ...+|++|+.+++|.+|.+.+++....+....
T Consensus        27 fi~tcgsdg~ir~~~---~~sd~e~P~ti~~----~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft   96 (933)
T KOG1274|consen   27 FICTCGSDGDIRKWK---TNSDEEEPETIDI----SGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT   96 (933)
T ss_pred             EEEEecCCCceEEee---cCCcccCCchhhc----cCceeEEEee---cccceEEeeccceEEEeeCCCCCccceeeeee
Confidence            367788899999992   2222122222221    7888998884   34589999999999999998876433222111


Q ss_pred             CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC
Q 046899          127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS  206 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~  206 (407)
                      ...                          ...+.......++.|+.|-.|++.+.........+++|.++|.++.|+|.+
T Consensus        97 lp~--------------------------r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~  150 (933)
T KOG1274|consen   97 LPI--------------------------RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG  150 (933)
T ss_pred             ccc--------------------------eEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence            110                          011111222457889999999999999999999999999999999999999


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCceeeecc--------cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 046899          207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKA--------HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG  278 (407)
Q Consensus       207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~  278 (407)
                       ++||+.+.||.|++||+.++.  +..++.+        ....+..++|+| ++..++..+.|+.|++|+...      +
T Consensus       151 -~fLAvss~dG~v~iw~~~~~~--~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~------w  220 (933)
T KOG1274|consen  151 -NFLAVSSCDGKVQIWDLQDGI--LSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKG------W  220 (933)
T ss_pred             -CEEEEEecCceEEEEEcccch--hhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCC------c
Confidence             899999999999999999876  3333221        145567899999 777777778899999999998      8


Q ss_pred             CceeeecC--CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          279 SPIHKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       279 ~~~~~~~~--h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      .+...+..  +...+.+++|+|+|.|| |+++.||.|.|||+++...    ......|.+++|-|+
T Consensus       221 e~~f~Lr~~~~ss~~~~~~wsPnG~Yi-AAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  221 ELQFKLRDKLSSSKFSDLQWSPNGKYI-AASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPN  281 (933)
T ss_pred             eeheeecccccccceEEEEEcCCCcEE-eeeccCCcEEEEecccchh----ccccceeEEEecCCC
Confidence            88888765  44559999999999987 8999999999999998322    333556777788776

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=3.2e-20  Score=167.03  Aligned_cols=293  Identities=18%  Similarity=0.259  Sum_probs=188.8

Q ss_pred             EEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC
Q 046899           42 CRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN  118 (407)
Q Consensus        42 ~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~  118 (407)
                      +.|.|   .+++++.|.++++|-   ....   ...-....+||.+.|.+++|.|.+...|+||+.||.|.|||+.-...
T Consensus       106 l~wapge~~lVsasGDsT~r~Wd---vk~s---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~  179 (720)
T KOG0321|consen  106 LKWAPGESLLVSASGDSTIRPWD---VKTS---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV  179 (720)
T ss_pred             eccCCCceeEEEccCCceeeeee---eccc---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence            34555   478999999999992   2111   11112246799999999999999999999999999999999975431


Q ss_pred             cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc---
Q 046899          119 RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED---  195 (407)
Q Consensus       119 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~---  195 (407)
                      .. +...         ..++++..+..      +.                     ..+    ...+.+...+.+..   
T Consensus       180 d~-~e~~---------~~~~~~~~n~~------pt---------------------psk----p~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  180 DA-LEEF---------DNRIYGRHNTA------PT---------------------PSK----PLKKRIRKWKAASNTIF  218 (720)
T ss_pred             hh-HHHH---------hhhhhccccCC------CC---------------------CCc----hhhccccccccccCcee
Confidence            11 0000         00000000000      00                     000    00011122223333   


Q ss_pred             -CEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCC------ceeeeccc---CcceEEEEecCCCCCEEEEEeCCCcE
Q 046899          196 -TVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTP------AVKVEKAH---NADIHCVDWNPHDVNLILTGSADNSI  264 (407)
Q Consensus       196 -~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~------~~~~~~~~---~~~v~~l~~~~~~~~~l~tg~~dg~i  264 (407)
                       .|+.+.| .|. ..||+++. |+.|++||+++....      ....+..|   .-.+.++..+. .|.+|++.+.|+.|
T Consensus       219 ssvTvv~f-kDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sI  295 (720)
T KOG0321|consen  219 SSVTVVLF-KDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSI  295 (720)
T ss_pred             eeeEEEEE-ecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcE
Confidence             3555655 445 57888887 999999999986521      11112223   23567788777 66777777779999


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCC--EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc-cccccCCCcccCCCCcC
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-QDYGELKYPIIHPAYSS  341 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~--v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~  341 (407)
                      ++|+++...    -.++..+.++-..  -..-..+|++.++ ++|+.|....+|.+.+.+.. ..+.+|...|+.++|.|
T Consensus       296 y~ynm~s~s----~sP~~~~sg~~~~sf~vks~lSpd~~~l-~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  296 YFYNMRSLS----ISPVAEFSGKLNSSFYVKSELSPDDCSL-LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             EEEeccccC----cCchhhccCcccceeeeeeecCCCCceE-eccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            999999865    4566666654322  1222468999987 59999999999999987665 45678888888888866


Q ss_pred             cchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc--------cCChHHHHHHHhhcccceeEeecc
Q 046899          342 DMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI--------YRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                      .                 +...|++++.|.+++||++....        +....+.+..+.+|...|..|.++
T Consensus       371 S-----------------~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss  426 (720)
T KOG0321|consen  371 S-----------------ATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSS  426 (720)
T ss_pred             c-----------------cCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcccccccccccc
Confidence            4                 35677788999999999995422        122345566778887777666554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=5.3e-21  Score=159.18  Aligned_cols=271  Identities=16%  Similarity=0.198  Sum_probs=186.0

Q ss_pred             eCCCceEEEEEeC----CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           81 IHPGEVNRIRELP----QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        81 ~h~~~v~~l~~~~----~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      .|..+|..++|.+    .....+||.+.+ .+.+|+....--...++.....-.+..-.-.-|-....            
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~------------  102 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN------------  102 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC------------
Confidence            5888999999985    356688888874 89999987654333333222221111112222322211            


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee-
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE-  235 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-  235 (407)
                           .-+..+++++.-|.|++.|..+++....+.+|...|+.|.++|..+++++++|.|..|++|++++..  ++..+ 
T Consensus       103 -----~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfG  175 (385)
T KOG1034|consen  103 -----TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFG  175 (385)
T ss_pred             -----CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEec
Confidence                 0134567788899999999999999999999999999999999999999999999999999999988  55544 


Q ss_pred             --cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC------------CCCC-------Ccee---eecCCCCCE
Q 046899          236 --KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS------------DGVG-------SPIH---KFEGHSAAV  291 (407)
Q Consensus       236 --~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~------------~~~~-------~~~~---~~~~h~~~v  291 (407)
                        .+|...|.+++|++ ++.+|++++.|.++++|++....-            ++..       .++-   +-.-|...|
T Consensus       176 G~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV  254 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV  254 (385)
T ss_pred             ccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence              57999999999999 999999999999999999973220            0000       0111   222378888


Q ss_pred             EEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCCCCcCcchhccccce-eeeeEeeCccceeeeEEE
Q 046899          292 LCVQWSPDKSSVFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHPAYSSDMLDIETKLL-TSIGMHLIHGRLLVCLTM  369 (407)
Q Consensus       292 ~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~  369 (407)
                      -|++|-  |.++| |-|.++.|..|-....+ .+..........+-+.    -.+.+...+ .=.|.+..+...|+.|..
T Consensus       255 DCvrw~--gd~il-SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~----~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  255 DCVRWF--GDFIL-SKSCENAIVCWKPGKLEESIHNVKPPESATTILG----EFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             HHHHHH--hhhee-ecccCceEEEEecchhhhhhhccCCCccceeeee----EeccCccceEEEEEeecHHHHHHhhccC
Confidence            899885  46564 88889999999884322 2121111111110000    011111111 224777788999999999


Q ss_pred             eeeEEEeecc
Q 046899          370 VKVLEIWRMI  379 (407)
Q Consensus       370 d~~i~iwd~~  379 (407)
                      .|.|.+||+.
T Consensus       328 ~g~v~vwdL~  337 (385)
T KOG1034|consen  328 SGKVYVWDLD  337 (385)
T ss_pred             CCcEEEEECC
Confidence            9999999997

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.5e-20  Score=153.22  Aligned_cols=247  Identities=11%  Similarity=0.150  Sum_probs=180.5

Q ss_pred             EEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC
Q 046899           41 SCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP  117 (407)
Q Consensus        41 s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  117 (407)
                      ++.|.|   .+..+++|+..++|         +.+.......+.|..++.+++|.+  ...+++|+.||.|+.+|+.++.
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlY---------dv~~~~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLY---------DVPANSLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEE---------eccchhhhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCc
Confidence            445654   57778899999999         223334555667999999999986  4578999999999999999875


Q ss_pred             CcccccCcCCCCCCC--------------CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899          118 NRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS  183 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~  183 (407)
                      ... +..|...+.++              |++|++||.............. +..+.......++.|+.+..+.+||+.+
T Consensus        87 ~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   87 EDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             cee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEeccCCEEEEeecCceEEEEEccc
Confidence            432 22233322222              9999999998743333332222 3333344456788899999999999988


Q ss_pred             cCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--CCceeeecccC---------cceEEEEecCC
Q 046899          184 IGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS--TPAVKVEKAHN---------ADIHCVDWNPH  250 (407)
Q Consensus       184 ~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~---------~~v~~l~~~~~  250 (407)
                      ........  .-.-.+.|+++.|.+ .=+++++-||.|.+=.++...  ......+..|.         -+|++|+|+| 
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-  242 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-  242 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-
Confidence            76544222  234578999999976 458888999999886666541  11233445553         3799999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                      --..||||+.||.|.+||+.+      .+.+..+......|.+++|+.+|.. ||.++.
T Consensus       243 ~~~tfaTgGsDG~V~~Wd~~~------rKrl~q~~~~~~SI~slsfs~dG~~-LAia~s  294 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWDLFN------RKRLKQLAKYETSISSLSFSMDGSL-LAIASS  294 (323)
T ss_pred             ccceEEecCCCceEEEccCcc------hhhhhhccCCCCceEEEEeccCCCe-EEEEec
Confidence            688999999999999999999      7888888877788999999999995 477763

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=2.3e-19  Score=166.93  Aligned_cols=269  Identities=17%  Similarity=0.258  Sum_probs=195.3

Q ss_pred             eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc--ccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899           75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR--HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP  152 (407)
Q Consensus        75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~  152 (407)
                      .+.....-..+|.++.|+|.++++||.|..+|+|.+||+..+...  ..+..+....+. .....+|..+.         
T Consensus       234 ~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~-~v~~vvW~~~~---------  303 (555)
T KOG1587|consen  234 TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSE-PVTAVVWLQNE---------  303 (555)
T ss_pred             CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCc-CeEEEEEeccC---------
Confidence            344444578899999999999999999999999999999987652  222211111111 34556665432         


Q ss_pred             CCCcccccCCCCCccccccCCCCCCCCCCCCcCc-eeeE-----e------ecccCEEEEEECCCCCcEEEEEeCCCcEE
Q 046899          153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGA-RGKY-----L------GHEDTVEDVQFCPSSAQEFCSVGDDSCLI  220 (407)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~-----~------~~~~~v~~l~~~~~~~~~l~s~~~dg~i~  220 (407)
                                .+..+++++.||.|..|++..... ....     .      .....+++++|.+..++.|+.|+++|.|.
T Consensus       304 ----------~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~  373 (555)
T KOG1587|consen  304 ----------HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY  373 (555)
T ss_pred             ----------CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence                      113467778899999997754332 1111     1      12347899999999999999999999988


Q ss_pred             EEEcCCCCCC------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC-CCCCCCCCCceeeecCCCCCEEE
Q 046899          221 LWDARSGSTP------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR-KLTSDGVGSPIHKFEGHSAAVLC  293 (407)
Q Consensus       221 iwd~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~-~~~~~~~~~~~~~~~~h~~~v~~  293 (407)
                      --+-...+..      .......|.++|+++.++|.....|++++ |.++++|... .      ..|+..+..+...|++
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~------~~Pl~~~~~~~~~v~~  446 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI------ASPLLSLDSSPDYVTD  446 (555)
T ss_pred             EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC------CCcchhhhhccceeee
Confidence            7433222211      13355678899999999998888888887 9999999988 4      6888888888889999


Q ss_pred             EEEcCCCCCEEEEeeCCCeEEEEeCCCCCc--ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee
Q 046899          294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGE--KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK  371 (407)
Q Consensus       294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~  371 (407)
                      ++|||..+.+|+++..||.|.+||+.....  ..+........+.+.+++.                  +..|++|...|
T Consensus       447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~------------------g~~lavGd~~G  508 (555)
T KOG1587|consen  447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN------------------GKLLAVGDANG  508 (555)
T ss_pred             eEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCC------------------CcEEEEecCCC
Confidence            999999999999999999999999986432  3333333344444555444                  78899999999


Q ss_pred             eEEEeeccccccCChHH
Q 046899          372 VLEIWRMIDLIYRPEEE  388 (407)
Q Consensus       372 ~i~iwd~~~~~~~~~~~  388 (407)
                      ++++|++.+....+.++
T Consensus       509 ~~~~~~l~~~l~~~~~~  525 (555)
T KOG1587|consen  509 TTHILKLSESLAVPSPN  525 (555)
T ss_pred             cEEEEEcCchhhccCcc
Confidence            99999998766555543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.84  E-value=6.4e-19  Score=154.68  Aligned_cols=257  Identities=20%  Similarity=0.266  Sum_probs=186.9

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-------------CCcEEEEecccc-cc--c
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-------------DQSVVLWSIQDH-VS--A  147 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------d~~i~~w~~~~~-~~--~  147 (407)
                      .-|.|++|.+ +++ ++||.++|.|.||+..+.+..+....|...+-.+             |+.|..||-+=. .+  .
T Consensus       247 k~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  247 KFVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             eEEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccccccccc
Confidence            6799999998 765 7799999999999998776655555555444332             889999983211 11  2


Q ss_pred             cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 046899          148 LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG  227 (407)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~  227 (407)
                      +....+.+..++.+.-+  +..|.....|..=.++.+ ......+|......++.+|+. ++|++++.|+.+++|+  ..
T Consensus       325 lPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~-f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~  398 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENG-FTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DH  398 (626)
T ss_pred             CchhcCCeeEEecCCCc--EEEeeccceEEEeeecCC-ceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--CC
Confidence            22223334444444433  444444444433233322 234456899999999999998 8999999999999999  22


Q ss_pred             CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe
Q 046899          228 STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS  307 (407)
Q Consensus       228 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~  307 (407)
                      +  ...+ ..-..++.|+.|+| .+ .+|.|...|...+.|.++      ...+..-.. ..++++++|+|+|.++ |.|
T Consensus       399 k--~~wt-~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~------~~lv~~~~d-~~~ls~v~ysp~G~~l-Avg  465 (626)
T KOG2106|consen  399 K--LEWT-KIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTET------QDLVTIHTD-NEQLSVVRYSPDGAFL-AVG  465 (626)
T ss_pred             c--eeEE-EEecCceeEeeccC-cc-eEEEeeccceEEEEeccc------ceeEEEEec-CCceEEEEEcCCCCEE-EEe
Confidence            3  2332 23456788999999 66 999999999999999998      445544444 8899999999999965 899


Q ss_pred             eCCCeEEEEeCCCCCcccccc--cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          308 AEDGILNIWDHEKIGEKQDYG--ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       308 ~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +.|+.|.+|-+...+......  .+..+|+.+.||+|                  +.++.+-+.|-.|-.|...
T Consensus       466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D------------------s~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD------------------SQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC------------------CceEEeccCceEEEEEccc
Confidence            999999999998766543322  24589999999999                  8888888999999999543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=3.3e-19  Score=162.03  Aligned_cols=342  Identities=14%  Similarity=0.186  Sum_probs=214.1

Q ss_pred             eEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899           40 LSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ  116 (407)
Q Consensus        40 ~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  116 (407)
                      ..+.|.|+   +.+.++.+..++|-     ..+...........||.+.|..+.|.| .|++|++.+.|.+-|++---..
T Consensus       320 ~g~lw~~n~~~ii~~g~~Gg~hlWk-----t~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~  393 (764)
T KOG1063|consen  320 WGGLWSPNSNVIIAHGRTGGFHLWK-----TKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGR  393 (764)
T ss_pred             eeEEEcCCCCEEEEecccCcEEEEe-----ccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccccc
Confidence            45677775   45566677788883     122222333445558999999999999 8889999999999999865421


Q ss_pred             CC----cccccCcCC-------------CCCCC-CCcEEEEecccccc----cccc--------CCCCCcccccCCCCCc
Q 046899          117 PN----RHAVLGAAD-------------SHPDL-DQSVVLWSIQDHVS----ALAA--------EPGSAKSTASGGANSK  166 (407)
Q Consensus       117 ~~----~~~~~~~~~-------------~~~~~-d~~i~~w~~~~~~~----~~~~--------~~~~~~~~~~~~~~~~  166 (407)
                      +.    +...+-|..             ++... ...+++++......    .+..        .+.+....+.|--+..
T Consensus       394 q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa  473 (764)
T KOG1063|consen  394 QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA  473 (764)
T ss_pred             ccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence            10    011111111             11111 44567776554310    0111        1111222222211111


Q ss_pred             ccc-ccCCCCC--------------CCCCCCC---------cCceeeEeecccCEEEEEECCCCCcEEEEEeCC-----C
Q 046899          167 NAS-KSGGNGD--------------KPLESPS---------IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-----S  217 (407)
Q Consensus       167 ~~~-~~~~~~i--------------~i~d~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-----g  217 (407)
                      ..- -..+|..              .+...+.         .-.++.+-+|...|++++.+|++ +++|++...     .
T Consensus       474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehA  552 (764)
T KOG1063|consen  474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHA  552 (764)
T ss_pred             CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccce
Confidence            111 1111111              0011010         11234556899999999999999 899998764     4


Q ss_pred             cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc
Q 046899          218 CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS  297 (407)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~  297 (407)
                      .|++|+..+-.  ....+.+|.-.|+.++|+| |+++|++.+.|.++.+|........  .......+.|+.-|++..|+
T Consensus       553 vI~lw~t~~W~--~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~--e~~fa~~k~HtRIIWdcsW~  627 (764)
T KOG1063|consen  553 VIRLWNTANWL--QVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKD--EFRFACLKAHTRIIWDCSWS  627 (764)
T ss_pred             EEEEEeccchh--hhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccch--hhhhccccccceEEEEcccC
Confidence            58999988776  5667889999999999999 9999999999999999998653211  11233467899999999999


Q ss_pred             CCCCCEEEEeeCCCeEEEEeCCCC--Ccccc--cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899          298 PDKSSVFGSSAEDGILNIWDHEKI--GEKQD--YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL  373 (407)
Q Consensus       298 ~~~~~ll~s~~~d~~i~vwd~~~~--~~~~~--~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i  373 (407)
                      |++.+ |||+|.|++|++|.....  +.+..  ...++.+|+.+++.+-             .+...+..|+.|-..|.|
T Consensus       628 pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~-------------~~~e~~~~vavGle~GeI  693 (764)
T KOG1063|consen  628 PDEKY-FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV-------------DHNEKGDVVAVGLEKGEI  693 (764)
T ss_pred             cccce-eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecc-------------ccccccceEEEEecccEE
Confidence            99998 589999999999999876  44433  3346777888877442             122224467889999999


Q ss_pred             EEeeccc------cccCChHHHHHHHhhcccceeEeeccC
Q 046899          374 EIWRMID------LIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       374 ~iwd~~~------~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .||....      ...-.....+....+|...|+-+.|+|
T Consensus       694 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p  733 (764)
T KOG1063|consen  694 VLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRP  733 (764)
T ss_pred             EEEecccccccccceeeeeccccccccChHHhhheeEecc
Confidence            9999641      000001111223445667777777764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.6e-19  Score=155.49  Aligned_cols=232  Identities=13%  Similarity=0.199  Sum_probs=184.3

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG  162 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  162 (407)
                      .+.|++|.|+| ...+|++++.||+++||.++....                                            
T Consensus       213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N--------------------------------------------  247 (514)
T KOG2055|consen  213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------------  247 (514)
T ss_pred             cCCceEEEecC-CCceEEEecCCCcEEEEEecCccC--------------------------------------------
Confidence            37899999999 888999999999999999875421                                            


Q ss_pred             CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC-cc
Q 046899          163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN-AD  241 (407)
Q Consensus       163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~  241 (407)
                                            ..++.+.--..+|.+.+|.|+|...+++++.-..++.||+.+.+...+....++. ..
T Consensus       248 ----------------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~  305 (514)
T KOG2055|consen  248 ----------------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS  305 (514)
T ss_pred             ----------------------hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence                                  1223333345689999999999558999999999999999988744444444554 35


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      +.....+| ++++|+..+..|.|.+....+      ++.+.+++ ..+.|..++|+.+++.|+ .++.+|.|.+||++..
T Consensus       306 ~e~FeVSh-d~~fia~~G~~G~I~lLhakT------~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~  376 (514)
T KOG2055|consen  306 MERFEVSH-DSNFIAIAGNNGHIHLLHAKT------KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQN  376 (514)
T ss_pred             hheeEecC-CCCeEEEcccCceEEeehhhh------hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCc
Confidence            66788899 999999999999999999998      88898888 478999999999999886 5555899999999998


Q ss_pred             CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccccee
Q 046899          322 GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIF  401 (407)
Q Consensus       322 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  401 (407)
                      .++..+...+. |.+..                ++..-++.++++||..|.|.|||.++-.-....+++..+..-...|+
T Consensus       377 ~~~~rf~D~G~-v~gts----------------~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It  439 (514)
T KOG2055|consen  377 SCLHRFVDDGS-VHGTS----------------LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT  439 (514)
T ss_pred             ceEEEEeecCc-cceee----------------eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeee
Confidence            77777654322 22211                22233488999999999999999876666667788999999999999


Q ss_pred             EeeccC
Q 046899          402 GCDKSC  407 (407)
Q Consensus       402 ~~~~s~  407 (407)
                      ++.|++
T Consensus       440 sl~Fn~  445 (514)
T KOG2055|consen  440 SLQFNH  445 (514)
T ss_pred             eeeeCc
Confidence            999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=3.5e-19  Score=144.16  Aligned_cols=279  Identities=12%  Similarity=0.144  Sum_probs=184.8

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC-cCCCCCCC-------------CCcEEEEec
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG-AADSHPDL-------------DQSVVLWSI  141 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~-------------d~~i~~w~~  141 (407)
                      .+.+.+|.+.|+++.|-. ++ +|.+|..-|.|.+|++++......+.. +...+...             |..+.+|++
T Consensus         7 ~fvLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI   84 (323)
T ss_pred             eeEeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence            344558999999999865 44 588999999999999999876655542 22222111             889999998


Q ss_pred             ccccccc--ccCCCCCccc-----ccCCCCCccccccC--CCCCCCCCCCCcCceeeEe----ecccCEEEEEECCC-C-
Q 046899          142 QDHVSAL--AAEPGSAKST-----ASGGANSKNASKSG--GNGDKPLESPSIGARGKYL----GHEDTVEDVQFCPS-S-  206 (407)
Q Consensus       142 ~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~-~-  206 (407)
                      .......  ....+...|.     +.++....+...-.  .....+-|......++...    +..+.+.|..+.-. + 
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            7631100  0001111111     11111111111111  1112223332222222221    23467777775332 2 


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCC--------CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 046899          207 AQEFCSVGDDSCLILWDARSGST--------PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG  278 (407)
Q Consensus       207 ~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~  278 (407)
                      .-++++|-++|.+.+||+.++..        +.......|..+|.++.+.+ .-..=++|+.+..+.+|++....  +..
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~--gsl  241 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHST--GSL  241 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeecccc--Ccc
Confidence            13577788899999999998631        12334457899999999988 43444677888889999887532  002


Q ss_pred             CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEee
Q 046899          279 SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHL  358 (407)
Q Consensus       279 ~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~  358 (407)
                      +...++.-.+..|..+..-||++ ++||++.|+.||||..++...+..+..|...|.+++|+||                
T Consensus       242 q~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd----------------  304 (323)
T KOG0322|consen  242 QIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD----------------  304 (323)
T ss_pred             cccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC----------------
Confidence            22233333456789999999999 7899999999999999999999999999999999999999                


Q ss_pred             CccceeeeEEEeeeEEEeec
Q 046899          359 IHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       359 ~~~~~i~~~~~d~~i~iwd~  378 (407)
                        .+.+++++.|++|-+|++
T Consensus       305 --~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  305 --CELMAAASKDARISLWKL  322 (323)
T ss_pred             --CchhhhccCCceEEeeec
Confidence              788999999999999986

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.82  E-value=4.2e-19  Score=155.70  Aligned_cols=252  Identities=12%  Similarity=0.191  Sum_probs=199.1

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc--ccCc
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA--VLGA  125 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~--~~~~  125 (407)
                      +.|++ .+-+++|.   .....+..+........-...|+++..+| +++-|++|+.-.++.|||+......-.  +...
T Consensus       434 VyTgG-kgcVKVWd---is~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltss  508 (705)
T KOG0639|consen  434 VYTGG-KGCVKVWD---ISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS  508 (705)
T ss_pred             eEecC-CCeEEEee---ccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCc
Confidence            44444 33588993   33333333343444444677899999999 899999999999999999987643322  1111


Q ss_pred             C------CCCC--------CCCCcEEEEecccc--ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee
Q 046899          126 A------DSHP--------DLDQSVVLWSIQDH--VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK  189 (407)
Q Consensus       126 ~------~~~~--------~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~  189 (407)
                      .      ...+        ..||.|.+||+.+.  .+.+..+.++..++........+-+|+-|.+++-||+..++.++.
T Consensus       509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq  588 (705)
T KOG0639|consen  509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ  588 (705)
T ss_pred             chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence            0      0111        11999999999877  567889999998888888888999999999999999999887766


Q ss_pred             EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                      .. ....|.++.++|++ .+++.|.+++.+.+-.....+   ...+.-|.+.|.++.|.+ .|+++++.+.|..+..|.+
T Consensus       589 hd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  589 HD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             hh-hhhhheecccCCCc-cceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecc-cCceeeecCchhhhhhccC
Confidence            53 56789999999999 899999999999998877655   445567899999999999 9999999999999999988


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~  318 (407)
                      -.      +..+...+. ..+|.+...+.|.++| +||+.|+...||.+
T Consensus       663 Py------GasiFqskE-~SsVlsCDIS~ddkyI-VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  663 PY------GASIFQSKE-SSSVLSCDISFDDKYI-VTGSGDKKATVYEV  703 (705)
T ss_pred             cc------ccceeeccc-cCcceeeeeccCceEE-EecCCCcceEEEEE
Confidence            77      888888874 6789999999999976 79999999998875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.5e-19  Score=145.73  Aligned_cols=283  Identities=13%  Similarity=0.179  Sum_probs=183.8

Q ss_pred             eeEEEEe---ecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC
Q 046899           39 SLSCRWG---PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA  115 (407)
Q Consensus        39 ~~s~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  115 (407)
                      ..+|+|.   ..++.|+.+|.+-||   ++..-.     ....+.+|-.+|.+++|++ +|+.|+|++.|..|.+||+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~---D~~T~~-----iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIY---DFDTFR-----IARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEE---Eccccc-----hhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccC
Confidence            3455554   479999999999999   332221     1222337999999999999 999999999999999999999


Q ss_pred             CCCcccccCcCC-----CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899          116 QPNRHAVLGAAD-----SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY  190 (407)
Q Consensus       116 ~~~~~~~~~~~~-----~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  190 (407)
                      +.++..+.-...     ..|..+....+--++.....+.+........+          ...++.               
T Consensus        97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp----------~d~d~d---------------  151 (405)
T KOG1273|consen   97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP----------KDDDGD---------------  151 (405)
T ss_pred             CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc----------CCCccc---------------
Confidence            886655432111     00000111111111111111111110000000          000000               


Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC-cceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN-ADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                        -.....+..|.+.| +++++|...|.+.++|..+.+  ++..++-.. ..|..+.++. .++.|++-+.|..||.|++
T Consensus       152 --ln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e--~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  152 --LNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLE--CVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             --cccccccccccCCC-CEEEEecCcceEEEEecchhe--eeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEeh
Confidence              01111233688888 899999999999999999887  566655554 7899999988 9999999999999999998


Q ss_pred             CCCC---CCCCCCceeeecC--CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCC-CcccCCCCcCcc
Q 046899          270 RKLT---SDGVGSPIHKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK-YPIIHPAYSSDM  343 (407)
Q Consensus       270 ~~~~---~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~  343 (407)
                      +...   +++..++.+.++.  ...+-.++.|+.+|.|++|+......+.+|.-..+..++.+.+.. .....+.|.|- 
T Consensus       226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~-  304 (405)
T KOG1273|consen  226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV-  304 (405)
T ss_pred             hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc-
Confidence            7422   2222333344332  234556788999999998888888999999999999999988876 44555666543 


Q ss_pred             hhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                                       ...|++- ..|.|+||....
T Consensus       305 -----------------rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  305 -----------------RPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             -----------------eeeeeec-cCCceEEEEeec
Confidence                             3334444 677999998753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.82  E-value=2.3e-19  Score=149.51  Aligned_cols=249  Identities=20%  Similarity=0.362  Sum_probs=180.9

Q ss_pred             cCCCeeEEEE-------eecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCc
Q 046899           35 LVWPSLSCRW-------GPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPD  107 (407)
Q Consensus        35 ~~~p~~s~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~  107 (407)
                      .+-..+.|.|       .|.++.+++-+.+|++   ++...     .-.-...+|.+.|+.|+++|.+.+++++++.|.+
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVi---d~~~~-----~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s  159 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVI---DVVSG-----QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS  159 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEE---ecchh-----hhccceeccCccchhhhcCCCCCcEEEEecCCce
Confidence            3445567777       4667888888999998   11111     1133455899999999999999999999999999


Q ss_pred             EEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCce
Q 046899          108 VLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR  187 (407)
Q Consensus       108 i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~  187 (407)
                      ||+|++++..++..+-                                                                
T Consensus       160 vRlwnI~~~~Cv~VfG----------------------------------------------------------------  175 (385)
T KOG1034|consen  160 VRLWNIQTDVCVAVFG----------------------------------------------------------------  175 (385)
T ss_pred             EEEEeccCCeEEEEec----------------------------------------------------------------
Confidence            9999999876654431                                                                


Q ss_pred             eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--------------------------CceeeecccCcc
Q 046899          188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--------------------------PAVKVEKAHNAD  241 (407)
Q Consensus       188 ~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~~~~  241 (407)
                       -+.+|.+.|.++.|++++ ..+++++.|.+|++|++...+.                          |...+-..|...
T Consensus       176 -G~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny  253 (385)
T KOG1034|consen  176 -GVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY  253 (385)
T ss_pred             -ccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence             234799999999999999 7999999999999999984320                          011122346677


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC--------CCCCCceeeecCCCCCEEEEEE--cCCCCCEEEEeeCCC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS--------DGVGSPIHKFEGHSAAVLCVQW--SPDKSSVFGSSAEDG  311 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~h~~~v~~v~~--~~~~~~ll~s~~~d~  311 (407)
                      |-|+.|-   ++++++-+-++.|..|..-...+        ++....+.++.-....|+-+.|  .|-++. ||.|...|
T Consensus       254 VDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~-la~gnq~g  329 (385)
T KOG1034|consen  254 VDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM-LALGNQSG  329 (385)
T ss_pred             HHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH-HhhccCCC
Confidence            7777774   57899999999999998732211        1112334455545556666655  566774 58999999


Q ss_pred             eEEEEeCCCCCccc--cc--ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          312 ILNIWDHEKIGEKQ--DY--GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       312 ~i~vwd~~~~~~~~--~~--~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .|.+||++......  ++  ......|...+||.|                  +..|+..+.|++|.-||..
T Consensus       330 ~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d------------------gs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  330 KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD------------------GSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cEEEEECCCCCCccCceEEeccccceeeeeeeccc------------------CcEEEEEeCCCcEEEEEee
Confidence            99999999876642  11  223456788888888                  8889999999999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=8.1e-18  Score=152.77  Aligned_cols=260  Identities=13%  Similarity=0.144  Sum_probs=183.1

Q ss_pred             CCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           36 VWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        36 ~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      |-+..+..+..   .++.+..++.+.||...      .....+.+-..+-.+.|.+++|.+ ++ .|.+.+.+|+|.-||
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~------~~w~~~~vi~g~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwD   96 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLS------NNWFLEPVIHGPEDRSIESLAWAE-GG-RLFSSGLSGSITEWD   96 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccC------CCceeeEEEecCCCCceeeEEEcc-CC-eEEeecCCceEEEEe
Confidence            33444444432   47788889999999332      233333333334568899999995 55 577888889999999


Q ss_pred             CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee--eE
Q 046899          113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG--KY  190 (407)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~  190 (407)
                      +.+.+....+.....         .+|.+.                 .......++.++.+|.+..++...++...  .+
T Consensus        97 l~~lk~~~~~d~~gg---------~IWsia-----------------i~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l  150 (691)
T KOG2048|consen   97 LHTLKQKYNIDSNGG---------AIWSIA-----------------INPENTILAIGCDDGVLYDFSIGPDKITYKRSL  150 (691)
T ss_pred             cccCceeEEecCCCc---------ceeEEE-----------------eCCccceEEeecCCceEEEEecCCceEEEEeec
Confidence            999877666544322         356543                 12222456667788866666655554432  23


Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cc----cCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KA----HNADIHCVDWNPHDVNLILTGSADNSI  264 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~----~~~~v~~l~~~~~~~~~l~tg~~dg~i  264 (407)
                      .-.++.|.+++|+|++ ..+++|+.||.|++||..+++...+...  ..    ...-|+++.+-.  ...+++|..-|+|
T Consensus       151 ~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V  227 (691)
T KOG2048|consen  151 MRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTV  227 (691)
T ss_pred             ccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceE
Confidence            3457899999999999 7799999999999999998873221111  11    233577777765  4689999999999


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc----ccccccCCCcccCCCC
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE----KQDYGELKYPIIHPAY  339 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~  339 (407)
                      .+||...      +.++..+..|.+-|.+++..+++.+++ +++.|+.|..+...+.+.    ......|...+.+++.
T Consensus       228 ~FWd~~~------gTLiqS~~~h~adVl~Lav~~~~d~vf-saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av  299 (691)
T KOG2048|consen  228 TFWDSIF------GTLIQSHSCHDADVLALAVADNEDRVF-SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAV  299 (691)
T ss_pred             EEEcccC------cchhhhhhhhhcceeEEEEcCCCCeEE-EccCCCceEEEEecCCccceeeeccccCCcccceeeee
Confidence            9999999      999999999999999999999999886 888999999998877544    1222345555555555

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.82  E-value=8.6e-19  Score=157.01  Aligned_cols=249  Identities=11%  Similarity=0.086  Sum_probs=164.9

Q ss_pred             CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCC
Q 046899           96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNG  175 (407)
Q Consensus        96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (407)
                      ++++++++.|+.|++||+.+++....+..+...                        ....+.+.+..  .++++..++.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~------------------------~~l~~~~dg~~--l~~~~~~~~~   54 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRP------------------------RGITLSKDGKL--LYVCASDSDT   54 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCC------------------------CceEECCCCCE--EEEEECCCCe
Confidence            357899999999999999887655544332111                        01111112211  1244567788


Q ss_pred             CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899          176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI  255 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  255 (407)
                      +.+||..+++....+..+.. +..++|+|++..++++++.|+.|++||+++.+  ....+. +...+.+++|+| ++.++
T Consensus        55 v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~-~~~~~~~~~~~~-dg~~l  129 (300)
T TIGR03866        55 IQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIP-VGVEPEGMAVSP-DGKIV  129 (300)
T ss_pred             EEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEee-CCCCcceEEECC-CCCEE
Confidence            99999998887776654433 56889999984455566678999999998765  344432 334568899999 88999


Q ss_pred             EEEeCCC-cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCC---
Q 046899          256 LTGSADN-SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK---  331 (407)
Q Consensus       256 ~tg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~---  331 (407)
                      +++..++ .+.+||.++      ++....+.. ...+.+++|+|+++++++++..++.|++||+++++.+..+..+.   
T Consensus       130 ~~~~~~~~~~~~~d~~~------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~  202 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKT------YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV  202 (300)
T ss_pred             EEEecCCCeEEEEeCCC------CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc
Confidence            9888765 567789887      555554432 33457899999999887677779999999999877665543211   


Q ss_pred             --C--cccCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899          332 --Y--PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       332 --~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                        .  ...++.|+||                  +..++ +...++.|.+||+.      +++.+..+ .+...+.+++|+
T Consensus       203 ~~~~~~~~~i~~s~d------------------g~~~~~~~~~~~~i~v~d~~------~~~~~~~~-~~~~~~~~~~~~  257 (300)
T TIGR03866       203 HPEAVQPVGIKLTKD------------------GKTAFVALGPANRVAVVDAK------TYEVLDYL-LVGQRVWQLAFT  257 (300)
T ss_pred             ccccCCccceEECCC------------------CCEEEEEcCCCCeEEEEECC------CCcEEEEE-EeCCCcceEEEC
Confidence              1  1223455555                  55433 33445689999997      44443322 234468888887


Q ss_pred             C
Q 046899          407 C  407 (407)
Q Consensus       407 ~  407 (407)
                      +
T Consensus       258 ~  258 (300)
T TIGR03866       258 P  258 (300)
T ss_pred             C
Confidence            5

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.7e-18  Score=145.08  Aligned_cols=272  Identities=16%  Similarity=0.194  Sum_probs=181.5

Q ss_pred             eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCC
Q 046899           97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGD  176 (407)
Q Consensus        97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  176 (407)
                      ..+|++-..|.|++||..++..+..+.++....    ..+++-+-.                    -...+.+++.||+|
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~----N~vrf~~~d--------------------s~h~v~s~ssDG~V   96 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATT----NGVRFISCD--------------------SPHGVISCSSDGTV   96 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcc----cceEEecCC--------------------CCCeeEEeccCCeE
Confidence            578899999999999999988888877765542    233332221                    12336678889999


Q ss_pred             CCCCCCCcCceeeE--eecc-cCEEEEEECCCCCcEEEEEeC----CCcEEEEEcCCCCCCceeeecccCcceEEEEecC
Q 046899          177 KPLESPSIGARGKY--LGHE-DTVEDVQFCPSSAQEFCSVGD----DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP  249 (407)
Q Consensus       177 ~i~d~~~~~~~~~~--~~~~-~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~  249 (407)
                      ++||+........+  .++. .+..|++.+-.+ +++++|++    |-.|.+||+|..+++...-...|...|++++|+|
T Consensus        97 r~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP  175 (376)
T KOG1188|consen   97 RLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP  175 (376)
T ss_pred             EEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence            99998876655443  3444 467788877566 68888864    6789999999988655556678999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC-CCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK-SSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       250 ~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                      .++++|++|+.||.|.+||+....++  ..++.++ .|...|.++.|+.++ +.|+ +-+...+..+|+++.+.....++
T Consensus       176 ~~pnlLlSGSvDGLvnlfD~~~d~Ee--DaL~~vi-N~~sSI~~igw~~~~ykrI~-clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  176 SDPNLLLSGSVDGLVNLFDTKKDNEE--DALLHVI-NHGSSIHLIGWLSKKYKRIM-CLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             CCCCeEEeecccceEEeeecCCCcch--hhHHHhh-cccceeeeeeeecCCcceEE-EEEccCceeEEEccCCChhhccc
Confidence            99999999999999999999875331  2334444 478889999999887 2364 78889999999999887665554


Q ss_pred             cCCCcccCCCCcCcchh-ccccceeeeeEe-eCccc-eeeeEEEeeeEEEeeccccccCChHHHHHHHhh-cccceeEee
Q 046899          329 ELKYPIIHPAYSSDMLD-IETKLLTSIGMH-LIHGR-LLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK-FKSHIFGCD  404 (407)
Q Consensus       329 ~~~~~v~~~~~s~d~~~-~~~~~~~~~~~~-~~~~~-~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~~~  404 (407)
                      ...-.     +.. .+- .....+  +-.+ .+... ..+.|...++..++-+.+..-......+..++| |...|.++.
T Consensus       252 ~~~~~-----~~d-~r~~~~~dY~--I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~  323 (376)
T KOG1188|consen  252 NPDVS-----ADD-LRKEDNCDYV--INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDIL  323 (376)
T ss_pred             Cccch-----hhh-HHhhhhhhhe--eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHh
Confidence            32111     000 000 000001  0111 11122 233444355666666554333445566677776 666666655


Q ss_pred             c
Q 046899          405 K  405 (407)
Q Consensus       405 ~  405 (407)
                      |
T Consensus       324 ~  324 (376)
T KOG1188|consen  324 F  324 (376)
T ss_pred             h
Confidence            4

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=3.3e-18  Score=154.20  Aligned_cols=147  Identities=18%  Similarity=0.363  Sum_probs=121.9

Q ss_pred             ccCCCCCCCCCCCCcCce-----eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-----CceeeecccC
Q 046899          170 KSGGNGDKPLESPSIGAR-----GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-----PAVKVEKAHN  239 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~  239 (407)
                      .+..|.|-|+++.....+     ..+ -....|+.+.|+|.+...|+.++.||.|++|.+..+..     .....+..|.
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~  677 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG  677 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence            445677777776543221     111 13467999999998888999999999999999876531     2456678999


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ..|+++.|+|.-.+.|+++++|-+|++||+++      ++....+.+|.+.|.+++|+|+|+.+ ||.+.||+|++|+.+
T Consensus       678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~------~~~~~~l~gHtdqIf~~AWSpdGr~~-AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVASYDSTIELWDLAN------AKLYSRLVGHTDQIFGIAWSPDGRRI-ATVCKDGTLRVYEPR  750 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhhccceeeeeehhh------hhhhheeccCcCceeEEEECCCCcce-eeeecCceEEEeCCC
Confidence            99999999998889999999999999999999      88889999999999999999999965 899999999999999


Q ss_pred             CCCcc
Q 046899          320 KIGEK  324 (407)
Q Consensus       320 ~~~~~  324 (407)
                      +.+..
T Consensus       751 s~e~p  755 (1012)
T KOG1445|consen  751 SREQP  755 (1012)
T ss_pred             CCCCc
Confidence            86543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.4e-18  Score=149.61  Aligned_cols=279  Identities=17%  Similarity=0.238  Sum_probs=196.4

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC-cCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG-AADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      .++.+|.|.|+.|.|+. .|..|++|+.|..|.+||..++.....+.+ |...+         +              ..
T Consensus       136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~Nv---------f--------------Qa  191 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNV---------F--------------QA  191 (559)
T ss_pred             hcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccch---------h--------------hh
Confidence            35557999999999987 899999999999999999998776554432 22211         0              00


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCcC---ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSIG---ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV  232 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  232 (407)
                      +|++.. .+..++..+.+|.+++-.+....   ....+..|.++|..++..|..+..|.+++.|+.+.-+|+++......
T Consensus       192 KFiP~s-~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~  270 (559)
T KOG1334|consen  192 KFIPFS-GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK  270 (559)
T ss_pred             hccCCC-CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence            122221 12345666777777764433222   23445579999999999999999999999999999999998764323


Q ss_pred             eeeccc-Cc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC------CCCEEEEEEcCCCCC
Q 046899          233 KVEKAH-NA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH------SAAVLCVQWSPDKSS  302 (407)
Q Consensus       233 ~~~~~~-~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h------~~~v~~v~~~~~~~~  302 (407)
                      .....+ ..   ....++.+|-+.+.+++|+.|..+++||.+.....+...++..+..|      .-.|++++|+.++.-
T Consensus       271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE  350 (559)
T KOG1334|consen  271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE  350 (559)
T ss_pred             eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence            333333 33   46789999977789999999999999999986543333334444332      346999999988777


Q ss_pred             EEEEeeCCCeEEEEeCCCCCc-------------ccccccCCCc--ccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899          303 VFGSSAEDGILNIWDHEKIGE-------------KQDYGELKYP--IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL  367 (407)
Q Consensus       303 ll~s~~~d~~i~vwd~~~~~~-------------~~~~~~~~~~--v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~  367 (407)
                      |+| +-.|-.|.++.-..+.-             .+.+.+|...  |-++                 -.+.+..++|++|
T Consensus       351 lLa-SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV-----------------NFfGPrsEyVvSG  412 (559)
T KOG1334|consen  351 LLA-SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV-----------------NFFGPRSEYVVSG  412 (559)
T ss_pred             eee-eecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee-----------------eeccCccceEEec
Confidence            874 45578899995332111             1124444432  3333                 3344457899999


Q ss_pred             EEeeeEEEeeccccccCChHHHHHHHhhcccceeEee
Q 046899          368 TMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCD  404 (407)
Q Consensus       368 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~  404 (407)
                      |..|.|.||+-.      +++.+..+.|-...|+|+-
T Consensus       413 SDCGhIFiW~K~------t~eii~~MegDr~VVNCLE  443 (559)
T KOG1334|consen  413 SDCGHIFIWDKK------TGEIIRFMEGDRHVVNCLE  443 (559)
T ss_pred             CccceEEEEecc------hhHHHHHhhcccceEeccC
Confidence            999999999998      8999999999888888873

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=7.7e-19  Score=156.26  Aligned_cols=287  Identities=15%  Similarity=0.144  Sum_probs=199.0

Q ss_pred             hhhhhccCceEEEeeeecccCCCeeEEEEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCC
Q 046899           16 YTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQN   95 (407)
Q Consensus        16 ~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~   95 (407)
                      -+.|.......|.+--...+..|..    .|.+++++.++.+++|..+.-...............+|.++|.|+++.+ +
T Consensus       281 ~k~w~ik~tl~s~~d~ir~l~~~~s----ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n  355 (577)
T KOG0642|consen  281 TKKWNIKFTLRSHDDCIRALAFHPS----EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-N  355 (577)
T ss_pred             heecceeeeeecchhhhhhhhcCCC----CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-C
Confidence            4457776655544433333332222    3578999999999999543213333444555667779999999999776 9


Q ss_pred             CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCC
Q 046899           96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNG  175 (407)
Q Consensus        96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (407)
                      ++.+.+|+-||+|+.|++....  .....+                                                  
T Consensus       356 ~~~~ysgg~Dg~I~~w~~p~n~--dp~ds~--------------------------------------------------  383 (577)
T KOG0642|consen  356 GEHCYSGGIDGTIRCWNLPPNQ--DPDDSY--------------------------------------------------  383 (577)
T ss_pred             ceEEEeeccCceeeeeccCCCC--Cccccc--------------------------------------------------
Confidence            9999999999999999987221  111100                                                  


Q ss_pred             CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899          176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI  255 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  255 (407)
                            ........+.||++.|+.+++++.. ..|++++.||++++|+.....+ +......-.+.-.++++-.......
T Consensus       384 ------dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~  455 (577)
T KOG0642|consen  384 ------DPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHS  455 (577)
T ss_pred             ------Ccchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhh
Confidence                  0011234677999999999999988 7799999999999999887663 2222222233445666644122333


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCCceeeecC-------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          256 LTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       256 ~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                      ++...-+.-.++++..      ...+..+..       -...+..+.++|.+...| ++..|+.|+++|..++..+....
T Consensus       456 ~~s~~~~~~~~~~~ev------~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~-~~hed~~Ir~~dn~~~~~l~s~~  528 (577)
T KOG0642|consen  456 LASFRFGYTSIDDMEV------VSDLLIFESSASPGPRRYPQINKVVSHPTADITF-TAHEDRSIRFFDNKTGKILHSMV  528 (577)
T ss_pred             hhhcccccccchhhhh------hhheeeccccCCCcccccCccceEEecCCCCeeE-ecccCCceecccccccccchhee
Confidence            3333334444445444      233333321       124578899999998664 99999999999999999999999


Q ss_pred             cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccc
Q 046899          329 ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKS  398 (407)
Q Consensus       329 ~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~  398 (407)
                      .|...++++++.|+                  +.++.+++.|+.+++|.+.      ...++.....|..
T Consensus       529 a~~~svtslai~~n------------------g~~l~s~s~d~sv~l~kld------~k~~~~es~~~r~  574 (577)
T KOG0642|consen  529 AHKDSVTSLAIDPN------------------GPYLMSGSHDGSVRLWKLD------VKTCVLESTAHRK  574 (577)
T ss_pred             eccceecceeecCC------------------CceEEeecCCceeehhhcc------chheeeccccccc
Confidence            99999999999888                  8899999999999999997      5667776666653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=2.2e-17  Score=137.55  Aligned_cols=271  Identities=14%  Similarity=0.251  Sum_probs=185.8

Q ss_pred             EEEEeec---ccccCccceEEEEeec--ccCcccCCcce---eeEEEeeCCCceEEEEEeC------CCCeEEEEeeCCC
Q 046899           41 SCRWGPQ---LEQATYKNRQRLYLSE--QFNEEARSPFV---KKFKTIIHPGEVNRIRELP------QNSKIVATHTDSP  106 (407)
Q Consensus        41 s~~~~~~---~~~~~~~~~~~i~~~~--~~~~~~~~~~~---~~~~~~~h~~~v~~l~~~~------~~~~~l~tg~~dg  106 (407)
                      .|.|.|+   +.+.+.|+..++|-.+  .|......+..   ...-.....+-|..-+|-+      ++.+++|+.+.+.
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            5789997   6677888888999666  23322122111   1222233456677777752      2678999999999


Q ss_pred             cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCC-CCcC
Q 046899          107 DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLES-PSIG  185 (407)
Q Consensus       107 ~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~-~~~~  185 (407)
                      -|.+||.-+++....+......    |..       +....+       .|.++|.    .+.++....|+++|+ ..+.
T Consensus       134 PIh~wdaftG~lraSy~~ydh~----de~-------taAhsL-------~Fs~DGe----qlfaGykrcirvFdt~RpGr  191 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQ----DEY-------TAAHSL-------QFSPDGE----QLFAGYKRCIRVFDTSRPGR  191 (406)
T ss_pred             ceeeeeccccccccchhhhhhH----Hhh-------hhheeE-------EecCCCC----eEeecccceEEEeeccCCCC
Confidence            9999999999877655432110    000       000011       1111221    233444455555555 2222


Q ss_pred             cee---e----EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899          186 ARG---K----YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       186 ~~~---~----~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                      ...   +    -.+..+.|.|++|+|.....++.|+...++-||.-....  +...+.+|.+.|+.++|.+ +|+.|.+|
T Consensus       192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~e-dGn~lfsG  268 (406)
T KOG2919|consen  192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCE-DGNKLFSG  268 (406)
T ss_pred             CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEecc-CcCeeccc
Confidence            111   1    123467899999999987799999999999998877666  5677779999999999999 88888888


Q ss_pred             eC-CCcEEEEeCCCCCCCCCCCceeeecCCCC-CEEEEEE--cCCCCCEEEEeeCCCeEEEEeCCCCCc-ccccccCCCc
Q 046899          259 SA-DNSIHMFDRRKLTSDGVGSPIHKFEGHSA-AVLCVQW--SPDKSSVFGSSAEDGILNIWDHEKIGE-KQDYGELKYP  333 (407)
Q Consensus       259 ~~-dg~i~vwd~~~~~~~~~~~~~~~~~~h~~-~v~~v~~--~~~~~~ll~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~  333 (407)
                      .. |-.|..||+|..     ..++..+..|.. .-..|.|  .|++++ ||+|+.||.|++||++.... +..+..++..
T Consensus       269 aRk~dkIl~WDiR~~-----~~pv~~L~rhv~~TNQRI~FDld~~~~~-LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~  342 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYS-----RDPVYALERHVGDTNQRILFDLDPKGEI-LASGDTDGSVRVWDLKDLGNEVSVTGNYSDT  342 (406)
T ss_pred             ccCCCeEEEEeehhc-----cchhhhhhhhccCccceEEEecCCCCce-eeccCCCccEEEEecCCCCCccccccccccc
Confidence            75 678999999985     578888888765 4444544  588885 58999999999999999544 7777788888


Q ss_pred             ccCCCCcCc
Q 046899          334 IIHPAYSSD  342 (407)
Q Consensus       334 v~~~~~s~d  342 (407)
                      +.+++++|-
T Consensus       343 vNgvslnP~  351 (406)
T KOG2919|consen  343 VNGVSLNPI  351 (406)
T ss_pred             ccceecCcc
Confidence            889998885

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=8.6e-19  Score=146.91  Aligned_cols=193  Identities=22%  Similarity=0.345  Sum_probs=151.5

Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC-cce
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN-ADI  242 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v  242 (407)
                      +.++++.+.|+++++|..+++.+..++++...++.++|... +++.+.+|+.||+|++||+|............++ .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            44777889999999999999999999999999999999774 6688999999999999999988755555555665 567


Q ss_pred             EEEEecCCCCCEEEEEe----CCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          243 HCVDWNPHDVNLILTGS----ADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~----~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      .|++.+- ..+.+++|.    .+-.|.+||+|..+     +++..+ ..|..-|++++|+|..+.+|+|||.||.|.|+|
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q-----q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ-----QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD  194 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEecccc-----chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence            7788776 678888885    35689999999842     335555 459999999999999999999999999999999


Q ss_pred             CCCCCcccc---cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          318 HEKIGEKQD---YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       318 ~~~~~~~~~---~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      ++.....-.   .-.+...|-.+.|..+                 --.+|.+.+.+.+..+|++++
T Consensus       195 ~~~d~EeDaL~~viN~~sSI~~igw~~~-----------------~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  195 TKKDNEEDALLHVINHGSSIHLIGWLSK-----------------KYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             cCCCcchhhHHHhhcccceeeeeeeecC-----------------CcceEEEEEccCceeEEEccC
Confidence            987533222   2223444444444332                 234689999999999999984

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=2.8e-18  Score=154.65  Aligned_cols=234  Identities=18%  Similarity=0.268  Sum_probs=170.1

Q ss_pred             ceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCC
Q 046899           55 NRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQ  134 (407)
Q Consensus        55 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~  134 (407)
                      +.+-||   ++++..+.|....-.+ -....|+.+.|.|.+...||.++.||.|++|.+..+....              
T Consensus       603 G~iai~---el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--------------  664 (1012)
T KOG1445|consen  603 GVIAIY---ELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--------------  664 (1012)
T ss_pred             ceEEEE---EcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------
Confidence            345555   4555555555544333 3667899999999999999999999999999998653211              


Q ss_pred             cEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe
Q 046899          135 SVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG  214 (407)
Q Consensus       135 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~  214 (407)
                                                                     ....+...+..|...|+.+.|+|-..+.|++++
T Consensus       665 -----------------------------------------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as  697 (1012)
T KOG1445|consen  665 -----------------------------------------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVAS  697 (1012)
T ss_pred             -----------------------------------------------ccCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence                                                           223345667789999999999998778999999


Q ss_pred             CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEE
Q 046899          215 DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLC  293 (407)
Q Consensus       215 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~  293 (407)
                      .|-+|++||+++..  ....+.+|.+.|..++|+| +|+.+|+.+.||+|++|..+..     .+++++-++- ...--.
T Consensus       698 yd~Ti~lWDl~~~~--~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~-----e~pv~Eg~gpvgtRgAR  769 (1012)
T KOG1445|consen  698 YDSTIELWDLANAK--LYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSR-----EQPVYEGKGPVGTRGAR  769 (1012)
T ss_pred             ccceeeeeehhhhh--hhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCC-----CCccccCCCCccCccee
Confidence            99999999999988  6778889999999999999 9999999999999999999873     3556555442 233456


Q ss_pred             EEEcCCCCCEEEEee---CCCeEEEEeCCCCCc--cc--ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899          294 VQWSPDKSSVFGSSA---EDGILNIWDHEKIGE--KQ--DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC  366 (407)
Q Consensus       294 v~~~~~~~~ll~s~~---~d~~i~vwd~~~~~~--~~--~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~  366 (407)
                      |.|.-+|++++++|-   ...+|.+||..+...  +.  .+..... +.-..+.+|                 .+-.+++
T Consensus       770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~D-----------------s~~lflt  831 (1012)
T KOG1445|consen  770 ILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYD-----------------SNVLFLT  831 (1012)
T ss_pred             EEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCC-----------------CceEEEe
Confidence            778889998876653   245688888776431  11  1111111 111223333                 1345678


Q ss_pred             EEEeeeEEEeecc
Q 046899          367 LTMVKVLEIWRMI  379 (407)
Q Consensus       367 ~~~d~~i~iwd~~  379 (407)
                      |-.|..|..|.+.
T Consensus       832 GKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  832 GKGDRFVNMYEVI  844 (1012)
T ss_pred             cCCCceEEEEEec
Confidence            8999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=3.1e-17  Score=140.61  Aligned_cols=262  Identities=19%  Similarity=0.310  Sum_probs=179.4

Q ss_pred             CeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeE-EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           38 PSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKF-KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        38 p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      |.+++++.+    .++|++.|..+|+|....-..+......+-. .+..|..+||+++|+| +|++||+|+++|.|.+|-
T Consensus        15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWK   93 (434)
T ss_pred             ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEE
Confidence            555666544    4889999999999944311111111223322 3446999999999999 999999999999999998


Q ss_pred             CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee
Q 046899          113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG  192 (407)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~  192 (407)
                      ...-...                    +-++. .                               -.+.+.......+.+
T Consensus        94 ~~~~~~~--------------------~~d~e-~-------------------------------~~~ke~w~v~k~lr~  121 (434)
T KOG1009|consen   94 QGDVRIF--------------------DADTE-A-------------------------------DLNKEKWVVKKVLRG  121 (434)
T ss_pred             ecCcCCc--------------------cccch-h-------------------------------hhCccceEEEEEecc
Confidence            7641100                    00000 0                               000112234456678


Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL  272 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  272 (407)
                      |...|..++|+|++ +++++++-|..+++||+..++  ....+.+|...+..++|+| -.+++++-+.|...+.+++...
T Consensus       122 h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  122 HRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             cccchhhhhccCCC-ceeeeeeccceEEEEEeccce--eEeeccccccccceeecch-hhhhhhhhccCcccceeeeeee
Confidence            99999999999999 899999999999999999999  7888889999999999999 7788888888876666553221


Q ss_pred             C-----------------------------------------CCCC----------------------------CCceee
Q 046899          273 T-----------------------------------------SDGV----------------------------GSPIHK  283 (407)
Q Consensus       273 ~-----------------------------------------~~~~----------------------------~~~~~~  283 (407)
                      .                                         .++.                            ..|...
T Consensus       198 ~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~  277 (434)
T KOG1009|consen  198 QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR  277 (434)
T ss_pred             eeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee
Confidence            1                                         0000                            122233


Q ss_pred             ecCCCCCEEEEEEcCC-----------------CCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcCcchh
Q 046899          284 FEGHSAAVLCVQWSPD-----------------KSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSDMLD  345 (407)
Q Consensus       284 ~~~h~~~v~~v~~~~~-----------------~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~  345 (407)
                      +..-..++..++|+|-                 .+.++|.++ -+.|.+||.++...+..... |-.+++.++||+|   
T Consensus       278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~d---  353 (434)
T KOG1009|consen  278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD---  353 (434)
T ss_pred             cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCC---
Confidence            3333445666666540                 123455555 46799999998777766554 7788999999999   


Q ss_pred             ccccceeeeeEeeCccceeeeEEEeeeEEE
Q 046899          346 IETKLLTSIGMHLIHGRLLVCLTMVKVLEI  375 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~i~~~~~d~~i~i  375 (407)
                                     +..++..|.||-.-+
T Consensus       354 ---------------g~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  354 ---------------GSVLLVSSTDGFCSL  368 (434)
T ss_pred             ---------------CcEEEEeccCCceEE
Confidence                           888888888883333

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=3.8e-17  Score=134.28  Aligned_cols=207  Identities=18%  Similarity=0.305  Sum_probs=158.9

Q ss_pred             CCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899           36 VWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW  111 (407)
Q Consensus        36 ~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  111 (407)
                      .-|-.||+|..    .+.+.+-|.+..+|     +.+.........++++|..+|..++|....-+++|+.|.||+||+|
T Consensus       150 ~aPlTSFDWne~dp~~igtSSiDTTCTiW-----die~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF  224 (364)
T KOG0290|consen  150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIW-----DIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF  224 (364)
T ss_pred             CCcccccccccCCcceeEeecccCeEEEE-----EEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEE
Confidence            34888999964    47788889999999     3344456667889999999999999998667899999999999999


Q ss_pred             eCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe
Q 046899          112 DVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL  191 (407)
Q Consensus       112 d~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~  191 (407)
                      |++..+.                +-.+|.-.                                                 
T Consensus       225 DLR~leH----------------STIIYE~p-------------------------------------------------  239 (364)
T KOG0290|consen  225 DLRSLEH----------------STIIYEDP-------------------------------------------------  239 (364)
T ss_pred             Eeccccc----------------ceEEecCC-------------------------------------------------
Confidence            9986532                11222111                                                 


Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      ....+...++|++++++++|+-..| ..|.|-|+|....+ +..++.|.+.|++++|.|.....+++++.|..+.+||+.
T Consensus       240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp-va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP-VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc-eehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence            1134677899999998999887665 57999999988764 778899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      .+.......++..+. -.+.|+.++|++...--++.+. ++++.+
T Consensus       319 q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  319 QMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             cccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            865422234555555 4678999999976554555554 455544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=7.7e-18  Score=144.26  Aligned_cols=174  Identities=24%  Similarity=0.376  Sum_probs=142.5

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      ...+|..+.|.+...+.||||+.|..|++|.+........           +                            
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-----------~----------------------------   52 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-----------D----------------------------   52 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-----------c----------------------------
Confidence            4568999999986666999999999999999886542210           0                            


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--------C------C
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--------S------G  227 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--------~------~  227 (407)
                                          .+-+....+..|...|+++.|+|+| .+||+|+.+|.|.+|-..        +      .
T Consensus        53 --------------------~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke  111 (434)
T KOG1009|consen   53 --------------------MKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKE  111 (434)
T ss_pred             --------------------eeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCcc
Confidence                                0112234566799999999999999 899999999999999766        2      1


Q ss_pred             CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe
Q 046899          228 STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS  307 (407)
Q Consensus       228 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~  307 (407)
                      .....+...+|...|..++|+| +++++++|+.|..+++||+..      +.....+..|...|..++|.|-++++ ++-
T Consensus       112 ~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~------G~l~~~~~dh~~yvqgvawDpl~qyv-~s~  183 (434)
T KOG1009|consen  112 KWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA------GQLLAILDDHEHYVQGVAWDPLNQYV-ASK  183 (434)
T ss_pred             ceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc------ceeEeeccccccccceeecchhhhhh-hhh
Confidence            1223456678999999999999 999999999999999999999      99999999999999999999999987 688


Q ss_pred             eCCCeEEEEeCCCCCc
Q 046899          308 AEDGILNIWDHEKIGE  323 (407)
Q Consensus       308 ~~d~~i~vwd~~~~~~  323 (407)
                      +.|...+.+++..-+.
T Consensus       184 s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  184 SSDRHPEGFSAKLKQV  199 (434)
T ss_pred             ccCcccceeeeeeeee
Confidence            8898788877765333

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=2.9e-17  Score=156.08  Aligned_cols=295  Identities=13%  Similarity=0.127  Sum_probs=187.6

Q ss_pred             EEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC-CCCeEEEEeeCCCcEEEEeCcCCC-Ccc
Q 046899           43 RWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP-QNSKIVATHTDSPDVLIWDVEAQP-NRH  120 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~-~~~  120 (407)
                      +|.|.++++.....+++|   +|.+......+....  .-...|+.|.+.. ++..++++|+.||.||||+--... ...
T Consensus      1074 pf~p~i~~ad~r~~i~vw---d~e~~~~l~~F~n~~--~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1074 PFEPQIAAADDRERIRVW---DWEKGRLLNGFDNGA--FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred             CCCceeEEcCCcceEEEE---ecccCceeccccCCC--CCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence            445567777766678899   444333221111111  2346788888764 466799999999999999754321 111


Q ss_pred             cc----cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe-eccc
Q 046899          121 AV----LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL-GHED  195 (407)
Q Consensus       121 ~~----~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~  195 (407)
                      ++    .+-....+..+++=.+.|-+                   .....+.+++.-..|+|||....+.+..+. +...
T Consensus      1149 eLVTaw~~Ls~~~~~~r~~~~v~dWq-------------------Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQ-------------------QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred             eeEEeeccccccCccCCCCCeeeehh-------------------hhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence            11    11111111111111222211                   112235556667889999998877776654 3445


Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-CceeeecccCcc--eEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-PAVKVEKAHNAD--IHCVDWNPHDVNLILTGSADNSIHMFDRRKL  272 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~--v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  272 (407)
                      .|+++.-+-.+++++++|-.||.|++||.|.... ..+...+.|+..  |..+.+.+++-..|++|+.||.|++||+|..
T Consensus      1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            6777766554458999999999999999987543 235566788877  9999998844456999999999999999983


Q ss_pred             CCCCCCCceeeecCCC--C-CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccc
Q 046899          273 TSDGVGSPIHKFEGHS--A-AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETK  349 (407)
Q Consensus       273 ~~~~~~~~~~~~~~h~--~-~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~  349 (407)
                      .    .+...++..|.  + .++++..|++.+ ++|+|+. +.|+||++.. +++..+..+..-...          ..+
T Consensus      1290 ~----~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q----------~~g 1352 (1387)
T KOG1517|consen 1290 S----KETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQ----------RIG 1352 (1387)
T ss_pred             c----ccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecCh-hhhcccccCcccccC----------cCC
Confidence            2    12222333332  3 599999999988 6789887 9999999875 333333322111000          000


Q ss_pred             ceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          350 LLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       350 ~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .. ++..+.+|.-.+++|+.|++|.||...
T Consensus      1353 s~-scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1353 SV-SCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             Cc-ceeeecchhHhhhhccCCceEEEeecC
Confidence            00 225566678899999999999999875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=9.2e-17  Score=133.63  Aligned_cols=335  Identities=13%  Similarity=0.137  Sum_probs=216.0

Q ss_pred             hhhhhhhhccCceEEEe-----eeecccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCC
Q 046899           13 DDRYTQWKSLVPVLYDW-----LANHNLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPG   84 (407)
Q Consensus        13 ~~~~~~w~~~~~~~y~~-----l~~~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~   84 (407)
                      -++.+.|+++-|-...-     |-.|+-.  ...+.|..   .++|.+.|+.+|+|-..+|...+ ...+....   .-+
T Consensus        60 hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~--vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-Hr~~R~nv---e~d  133 (420)
T KOG2096|consen   60 HQRNDQWKAKQPTFVHPLNVSVLKGHKKE--VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-HRCIRQNV---EYD  133 (420)
T ss_pred             ccchhhhcccCCCcccchhhhhhhccCCc--eeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-hhHhhccc---cCC
Confidence            35677888887753222     2222222  22335543   59999999999999655432221 11122222   223


Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEe---ccccccccccCCCCCcccccC
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWS---IQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~---~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      ..+.++|.|+-..++++.-...++++|.+...+.-. ..-          ...-||   +....      ...+..+-..
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~-~~~----------~~v~~D~~~f~~kh------~v~~i~iGiA  196 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS-GSH----------HFVHIDNLEFERKH------QVDIINIGIA  196 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccCC-CCc----------ccccccccccchhc------ccceEEEeec
Confidence            567888999666677777777789999887654210 000          001122   11100      0000001111


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC---CCC---CCceeee
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR---SGS---TPAVKVE  235 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~---~~~---~~~~~~~  235 (407)
                      .....+.+++.+..|.+|++. ++.++.+......-+..+.+|+| +++++++----|++|.+-   .+.   ......+
T Consensus       197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L  274 (420)
T KOG2096|consen  197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL  274 (420)
T ss_pred             CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence            223457888999999999998 88888877666667788999999 899999988899999873   222   1245678


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC-CCceeeec----CCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV-GSPIHKFE----GHSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~----~h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                      .+|.+.|..++|++ +...++|.+.||++++||..-....+. .+.+.+..    .-.+.-..++++|+|. +|| .+..
T Consensus       275 kGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA-~s~g  351 (420)
T KOG2096|consen  275 KGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLA-VSFG  351 (420)
T ss_pred             ccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEE-eecC
Confidence            89999999999999 899999999999999999865322111 23333331    1122334899999999 443 4446


Q ss_pred             CeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee-ccccccCChHH
Q 046899          311 GILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR-MIDLIYRPEEE  388 (407)
Q Consensus       311 ~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd-~~~~~~~~~~~  388 (407)
                      ..++++..+.++....++ .|...|++++|++|                  +.++++++ |..++|.. ...     ...
T Consensus       352 s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~------------------g~~~atcG-dr~vrv~~ntpg-----~~~  407 (420)
T KOG2096|consen  352 SDLKVFASEDGKDYPELEDIHSTTISSISYSSD------------------GKYIATCG-DRYVRVIRNTPG-----WHS  407 (420)
T ss_pred             CceEEEEcccCccchhHHHhhcCceeeEEecCC------------------CcEEeeec-ceeeeeecCCCc-----hhh
Confidence            789999999988777766 48889999999998                  66766654 55777776 321     345


Q ss_pred             HHHHHhhcccc
Q 046899          389 VLAELDKFKSH  399 (407)
Q Consensus       389 ~~~~~~~h~~~  399 (407)
                      .+..+++|...
T Consensus       408 ~V~~~~~~l~~  418 (420)
T KOG2096|consen  408 RVVKLNRELPE  418 (420)
T ss_pred             HHHHhhccccc
Confidence            56667766543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.6e-17  Score=131.94  Aligned_cols=212  Identities=19%  Similarity=0.259  Sum_probs=146.4

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN  164 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  164 (407)
                      .|.+-+++| .+++|+.|..+|+|.+..+.+.......     .                                    
T Consensus        12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~-----~------------------------------------   49 (325)
T KOG0649|consen   12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAE-----P------------------------------------   49 (325)
T ss_pred             HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccC-----C------------------------------------
Confidence            355556788 8899999999999999998754211110     0                                    


Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-----Cc-eeeeccc
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-----PA-VKVEKAH  238 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~-~~~~~~~  238 (407)
                                       +...++...++|.++|+.++|+.   .+|++|+ ||.|+-|..+....     +. ......|
T Consensus        50 -----------------~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~  108 (325)
T KOG0649|consen   50 -----------------PGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQ  108 (325)
T ss_pred             -----------------CCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccc
Confidence                             11223445578999999999984   4677776 59999998875431     00 0111112


Q ss_pred             C-----cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          239 N-----ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       239 ~-----~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      .     -.|+++...| ..+-+++++.|+.++.||++.      ++..+++++|++.|.++.--.....+| ||+.||++
T Consensus       109 ~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~------G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtv  180 (325)
T KOG0649|consen  109 VDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLED------GRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTV  180 (325)
T ss_pred             cCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecC------CEEEEEEcCCcceeeeeeecccCccee-ecCCCccE
Confidence            2     3689999999 555555556899999999999      999999999999999999855445576 99999999


Q ss_pred             EEEeCCCCCcccccccCCCc-ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          314 NIWDHEKIGEKQDYGELKYP-IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      |+||+++.+..+.++..+.+ .....++.-           |..+.+..+++++|..- .+.+|++.
T Consensus       181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~w-----------igala~~edWlvCGgGp-~lslwhLr  235 (325)
T KOG0649|consen  181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKW-----------IGALAVNEDWLVCGGGP-KLSLWHLR  235 (325)
T ss_pred             EEEeccccceeEEeccccChhhcCcccCce-----------eEEEeccCceEEecCCC-ceeEEecc
Confidence            99999999988887654433 112222211           24444445566655433 67777776

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=6.5e-18  Score=144.17  Aligned_cols=167  Identities=17%  Similarity=0.360  Sum_probs=136.2

Q ss_pred             eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-----CCceeeecccCcceEEEEecCCCCCEEEEEeCCC
Q 046899          188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS-----TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN  262 (407)
Q Consensus       188 ~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg  262 (407)
                      ..+.+|+++|..++|+|...+.+|+||+|.+|.+|++-.+.     ...+..+.+|...|.-++|+|.-.+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            44568999999999999887899999999999999987543     1246678899999999999998889999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      .|.+||+.+      ++.+.++. |...|.++.|+.+|.+ |+|.+.|+.|||||.++++.+..-.+|.+.-        
T Consensus       155 ~v~iWnv~t------geali~l~-hpd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e~~~heG~k--------  218 (472)
T KOG0303|consen  155 TVSIWNVGT------GEALITLD-HPDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK--------  218 (472)
T ss_pred             eEEEEeccC------CceeeecC-CCCeEEEEEeccCCce-eeeecccceeEEEcCCCCcEeeecccccCCC--------
Confidence            999999999      88888888 9999999999999995 5899999999999999998887766665521        


Q ss_pred             chhccccceeeeeEeeCccceeeeEEE----eeeEEEeeccc
Q 046899          343 MLDIETKLLTSIGMHLIHGRLLVCLTM----VKVLEIWRMID  380 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~i~~~~~----d~~i~iwd~~~  380 (407)
                               ....++.+++. |++.++    +..+-+||..+
T Consensus       219 ---------~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  219 ---------PARAIFLASGK-IFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             ---------cceeEEeccCc-eeeeccccccccceeccCccc
Confidence                     11133344455 554443    33888998763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=1.2e-18  Score=161.53  Aligned_cols=242  Identities=22%  Similarity=0.293  Sum_probs=179.6

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      .++.+|..+|.|+.|.. .|.+++||++|..|+||...+..++....+|...+.+.                        
T Consensus       184 krLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdl------------------------  238 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDL------------------------  238 (1113)
T ss_pred             HHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchh------------------------
Confidence            35668999999999887 99999999999999999999999999988887654332                        


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC-CCCCCceeee
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR-SGSTPAVKVE  235 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~  235 (407)
                        +...-+..+++++.|..|++|.++.+.++..+.+|++.|++|+|+|..     +.+.||++++||.+ ....-.-...
T Consensus       239 --avs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~  311 (1113)
T KOG0644|consen  239 --AVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPL  311 (1113)
T ss_pred             --ccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCC
Confidence              122223446778889999999999999999999999999999999944     77899999999998 1110000000


Q ss_pred             c-ccCc--------------------------ceEEEEecCCCCCEEEE-----------EeCCCcEEEEeCCCCCCCCC
Q 046899          236 K-AHNA--------------------------DIHCVDWNPHDVNLILT-----------GSADNSIHMFDRRKLTSDGV  277 (407)
Q Consensus       236 ~-~~~~--------------------------~v~~l~~~~~~~~~l~t-----------g~~dg~i~vwd~~~~~~~~~  277 (407)
                      . ....                          .+.+++|.. ..-.+++           +-.+-.+++|++.+      
T Consensus       312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~------  384 (1113)
T KOG0644|consen  312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT------  384 (1113)
T ss_pred             CcccccceeeeeccccccccccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeEeeeeeccc------
Confidence            0 0001                          112222322 2222333           33445567788777      


Q ss_pred             CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEe
Q 046899          278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMH  357 (407)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~  357 (407)
                      +..++.+.+|...+..+.+||.+..+..+++.||...|||+-.+..++.+....+.+..-.||+|        -.++...
T Consensus       385 g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd--------gts~~ls  456 (1113)
T KOG0644|consen  385 GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD--------GTSIALS  456 (1113)
T ss_pred             chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC--------CceEecC
Confidence            78888888999999999999999988889999999999999998888877766777778899998        3344555


Q ss_pred             eCccceee
Q 046899          358 LIHGRLLV  365 (407)
Q Consensus       358 ~~~~~~i~  365 (407)
                      ..|+...+
T Consensus       457 d~hgql~i  464 (1113)
T KOG0644|consen  457 DDHGQLYI  464 (1113)
T ss_pred             CCCCceEE
Confidence            56666544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.76  E-value=1.2e-17  Score=135.44  Aligned_cols=272  Identities=15%  Similarity=0.218  Sum_probs=176.9

Q ss_pred             eeeecccCCCeeEEEEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcE
Q 046899           29 WLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDV  108 (407)
Q Consensus        29 ~l~~~~~~~p~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i  108 (407)
                      .|..+....-++-+|=...+.++...+.+.+|+-+   .+...+.+    ...|...|+.+.-.| + ..|.|-+.|+.+
T Consensus         9 vLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lq---t~r~~~~~----r~~g~~~it~lq~~p-~-d~l~tqgRd~~L   79 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQ---TERDLPLI----RLFGRLFITNLQSIP-N-DSLDTQGRDPLL   79 (323)
T ss_pred             EeccccchheehhhccchhhhcccccceEEEEEee---cCccchhh----hhhccceeeceeecC-C-cchhhcCCCceE
Confidence            34444444455555666678888999999999543   33333222    224778899999777 4 468899999999


Q ss_pred             EEEeCcCCCCccc--cc-CcCCCCCCC---CCcEE----EEeccc---------ccc-ccccCC-------CCCcc---c
Q 046899          109 LIWDVEAQPNRHA--VL-GAADSHPDL---DQSVV----LWSIQD---------HVS-ALAAEP-------GSAKS---T  158 (407)
Q Consensus       109 ~vwd~~~~~~~~~--~~-~~~~~~~~~---d~~i~----~w~~~~---------~~~-~~~~~~-------~~~~~---~  158 (407)
                      .+|++........  +. .+..+.+..   .++..    .++-+.         +.. .+...+       +.+..   .
T Consensus        80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            9999987432110  00 000000000   00000    111000         000 000000       00000   0


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcC----------ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIG----------ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS  228 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  228 (407)
                      ....-.-.+++|-.+|.+.+||+.++.          .+.....|..+|.++.+.+.- +.=++|+.+..+..|.++...
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeecccc
Confidence            001111235668899999999999873          334445689999999998765 456788888899999987542


Q ss_pred             --CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899          229 --TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       229 --~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                        .+......--...|..+..-| |++.+||++.|+.||||..++      ..++..++.|++.|++++|+|+.. |+|+
T Consensus       239 gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrt------l~pLAVLkyHsagvn~vAfspd~~-lmAa  310 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRT------LNPLAVLKYHSAGVNAVAFSPDCE-LMAA  310 (323)
T ss_pred             CcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEecc------CCchhhhhhhhcceeEEEeCCCCc-hhhh
Confidence              212222222344578889999 999999999999999999999      899999999999999999999977 6799


Q ss_pred             eeCCCeEEEEeC
Q 046899          307 SAEDGILNIWDH  318 (407)
Q Consensus       307 ~~~d~~i~vwd~  318 (407)
                      ++.|++|.+|++
T Consensus       311 askD~rISLWkL  322 (323)
T KOG0322|consen  311 ASKDARISLWKL  322 (323)
T ss_pred             ccCCceEEeeec
Confidence            999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=1.5e-17  Score=147.21  Aligned_cols=227  Identities=19%  Similarity=0.281  Sum_probs=160.8

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      .|...|.|+.|.. +...+.+++++..+.-||+... ....+.-...++|..+.   +.               ......
T Consensus        12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h---~~---------------~rs~~~   71 (737)
T KOG1524|consen   12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMH---LG---------------GRSSGG   71 (737)
T ss_pred             ccceeEEeecccc-cceEEEeccCceEEEeecccch-hhhhhhCCcccCCcccc---cc---------------ccccCC
Confidence            5777888999987 6666666655544444555433 33222222222221100   00               011113


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                      |.-...++..++||.+.+.. +.++......+|.+.+.|-.|+|+| .-|+++++||.|++|.- ++-  ...++.....
T Consensus        72 g~~~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGM--LRStl~Q~~~  146 (737)
T KOG1524|consen   72 GKGSDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGM--LRSTVVQNEE  146 (737)
T ss_pred             CCCcceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cch--HHHHHhhcCc
Confidence            33345567788888888776 4455666778899999999999999 77999999999999984 454  3344445677


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +|+|++|.|+..+.+++.+  +.+.|=-+..      ...+-.+++|.+-|.++.|++... |++||+.|-..++||-. 
T Consensus       147 ~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~------n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-  216 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQG--GHISIKPLAA------NSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-  216 (737)
T ss_pred             eeEEEEECCCCCceEEecC--CeEEEeeccc------ccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc-
Confidence            8999999996666666654  4566655555      456778899999999999999988 56899999999999965 


Q ss_pred             CCcccccccCCCcccCCCCcCc
Q 046899          321 IGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       321 ~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      +..+-+-..|+.||++++|+||
T Consensus       217 G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  217 GANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             CcccccCChhccceeeeeeccc
Confidence            4677777889999999999998

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=1.5e-16  Score=148.98  Aligned_cols=268  Identities=22%  Similarity=0.400  Sum_probs=195.5

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC-CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP-NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      ....|...+.++.+.+ .+..++.++.|+.+.+|+..... ....+......  . -..+...           ..    
T Consensus        60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~-----------~~----  120 (466)
T COG2319          60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS--S-VSKLALS-----------SP----  120 (466)
T ss_pred             eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCC--c-eeeEEEE-----------CC----
Confidence            4457999999999988 78888899899999999998775 33333221110  0 0000000           00    


Q ss_pred             ccccCCCCCcccc-ccCCCCCCCCCCCC-cCceeeEeecccCEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCcee
Q 046899          157 STASGGANSKNAS-KSGGNGDKPLESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVK  233 (407)
Q Consensus       157 ~~~~~~~~~~~~~-~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~  233 (407)
                         .+.  ..+.. ...++.+.+|+... ......+..|...|..++|+|++ ..+++++. |+.+++|++....  ...
T Consensus       121 ---~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~  192 (466)
T COG2319         121 ---DGN--SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK--PLS  192 (466)
T ss_pred             ---Ccc--eEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc--eEE
Confidence               111  12233 34488999999988 77788888999999999999999 57888875 9999999999855  567


Q ss_pred             eecccCcceEEEEecCCCCC-EEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          234 VEKAHNADIHCVDWNPHDVN-LILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      .+..|...+.+++|+| ++. ++++++.|+.|++||.+.      +..+. .+..|...+ -..|+|++. ++++++.|+
T Consensus       193 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~------~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~  263 (466)
T COG2319         193 TLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST------GKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDG  263 (466)
T ss_pred             eeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCC------CcEEeeecCCCCcce-eEeECCCCC-EEEEecCCC
Confidence            7777999999999998 776 566669999999998886      67777 688888875 448999996 456999999


Q ss_pred             eEEEEeCCCCCc-ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899          312 ILNIWDHEKIGE-KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL  390 (407)
Q Consensus       312 ~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~  390 (407)
                      .+++||+..... ...+..|..++.++.|+|+                  +..+++++.|+.+++|+...      ....
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~~~~~~~d~~~~~~~~~~------~~~~  319 (466)
T COG2319         264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD------------------GKLLASGSSDGTVRLWDLET------GKLL  319 (466)
T ss_pred             cEEEeeecCCCcEEEEEecCCccEEEEEECCC------------------CCEEEEeeCCCcEEEEEcCC------CceE
Confidence            999999997665 3333456666666666664                  66666788888999998873      3222


Q ss_pred             HH--HhhcccceeEeec
Q 046899          391 AE--LDKFKSHIFGCDK  405 (407)
Q Consensus       391 ~~--~~~h~~~v~~~~~  405 (407)
                      ..  ..+|...|..+.|
T Consensus       320 ~~~~~~~~~~~~~~~~~  336 (466)
T COG2319         320 SSLTLKGHEGPVSSLSF  336 (466)
T ss_pred             EEeeecccCCceEEEEE
Confidence            22  3477777777766

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5.7e-17  Score=138.39  Aligned_cols=178  Identities=16%  Similarity=0.211  Sum_probs=135.2

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      ...+|.+.|++|.|+. ++++||+|+.|..+++|++...-..+                                     
T Consensus        51 D~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k-------------------------------------   92 (609)
T KOG4227|consen   51 DVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRK-------------------------------------   92 (609)
T ss_pred             hhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhc-------------------------------------
Confidence            3458999999999998 79999999999999999987432111                                     


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                                               +.++++... .|...|.|++|+... ..+.+|+.+++|.+.|+.+.+...+....
T Consensus        93 -------------------------~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~qsi~V~~~~  146 (609)
T KOG4227|consen   93 -------------------------TPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQSIYVANEN  146 (609)
T ss_pred             -------------------------CCCCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecccceeeeeeccc
Confidence                                     112333332 366899999999877 78999999999999999988732222222


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      ...+.|+.+..+| ..+.|++.+.+|.|.+||.+.....  +.++ .+.........+.|+|..+.||++.+.-+-+.+|
T Consensus       147 ~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~--~~~~-~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~  222 (609)
T KOG4227|consen  147 NNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNP--ISLV-LPANSGKNFYTAEFHPETPALILVNSETGGPNVF  222 (609)
T ss_pred             CcccceeecccCC-CCceEEEEecCceEEEEeccCCCCC--Ccee-eecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence            3345999999999 6789999999999999999973211  1111 2222345678899999999999999999999999


Q ss_pred             eCCCCCc
Q 046899          317 DHEKIGE  323 (407)
Q Consensus       317 d~~~~~~  323 (407)
                      |.+....
T Consensus       223 D~R~~~~  229 (609)
T KOG4227|consen  223 DRRMQAR  229 (609)
T ss_pred             eeccccc
Confidence            9987543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=7.3e-17  Score=144.66  Aligned_cols=264  Identities=16%  Similarity=0.214  Sum_probs=183.9

Q ss_pred             CeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcC
Q 046899           38 PSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDVEA  115 (407)
Q Consensus        38 p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~  115 (407)
                      -++|++... -+++|+.|+++|+|         ......+++...-.+.|.||+|+|.... +||.+ .+..+.|-+..-
T Consensus       404 r~iSvdp~G~wlasGsdDGtvriW---------Ei~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~  473 (733)
T KOG0650|consen  404 RSISVDPSGEWLASGSDDGTVRIW---------EIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIF  473 (733)
T ss_pred             EEEEecCCcceeeecCCCCcEEEE---------EeecceEEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCccc
Confidence            556665533 38899999999999         4445667777788899999999994333 34444 334466655433


Q ss_pred             CCCc---------ccc----------------------------cCcCCCCCCC-----------------CCcEEEEec
Q 046899          116 QPNR---------HAV----------------------------LGAADSHPDL-----------------DQSVVLWSI  141 (407)
Q Consensus       116 ~~~~---------~~~----------------------------~~~~~~~~~~-----------------d~~i~~w~~  141 (407)
                      +..+         ...                            ..|...+..+                 ...|.|.++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            3110         000                            0011111111                 355666776


Q ss_pred             cccccccc--cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcE
Q 046899          142 QDHVSALA--AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCL  219 (407)
Q Consensus       142 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i  219 (407)
                      ........  ...+.+....+.... ..+..+....++|+|+...+.+..+......|..++.+|.| ..|+.|+.|+.+
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G-Dnli~gs~d~k~  631 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG-DNLILGSYDKKM  631 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCC-ceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC-CeEEEecCCCee
Confidence            65433222  222222223333222 23445667889999999988888888788899999999999 678899999999


Q ss_pred             EEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC---CCCCCCceeeecCCCCC----EE
Q 046899          220 ILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT---SDGVGSPIHKFEGHSAA----VL  292 (407)
Q Consensus       220 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~h~~~----v~  292 (407)
                      +.||+.-..+ ..+.+..|...+++++|++ .-.+|++|+.||.+.||--.-..   .+..--++..+++|...    |.
T Consensus       632 ~WfDldlssk-Pyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVL  709 (733)
T KOG0650|consen  632 CWFDLDLSSK-PYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVL  709 (733)
T ss_pred             EEEEcccCcc-hhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceE
Confidence            9999987766 4778889999999999999 88999999999999998643211   01113577888898765    99


Q ss_pred             EEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          293 CVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       293 ~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      ...|||...+|| +++.||+|++|
T Consensus       710 d~~wHP~qpWLf-sAGAd~tirlf  732 (733)
T KOG0650|consen  710 DTIWHPRQPWLF-SAGADGTIRLF  732 (733)
T ss_pred             eecccCCCceEE-ecCCCceEEee
Confidence            999999999997 88889999998

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=1.7e-16  Score=140.69  Aligned_cols=250  Identities=17%  Similarity=0.230  Sum_probs=155.8

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      .+..|+|++|.|-+..+++.+-.+|.+.++|..-......  .+.....+ -....+-.-.                   
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~--p~~~~~k~-~~~f~i~t~k-------------------  275 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA--PSYQALKD-GDQFAILTSK-------------------  275 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC--CcccccCC-CCeeEEeeee-------------------
Confidence            3478999999997788888889999999998732110000  00000000 0001110000                   


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD  241 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  241 (407)
                                        ...+..++..+.-.++.|+.++|+|+| .+||+.+.||.++|||..+.+  +.-.+...-+.
T Consensus       276 ------------------sk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~e--Llg~mkSYFGG  334 (636)
T KOG2394|consen  276 ------------------SKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQE--LLGVMKSYFGG  334 (636)
T ss_pred             ------------------ccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHH--HHHHHHhhccc
Confidence                              001113455555556789999999999 899999999999999999877  45555566788


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      ..|++|+| |+++|++|+.|..|.||.+..      .+.+..-++|+.+|..|+|.|   |. .+.-.++...=-|-...
T Consensus       335 LLCvcWSP-DGKyIvtGGEDDLVtVwSf~e------rRVVARGqGHkSWVs~VaFDp---yt-t~~ee~~~~~~~~~~~~  403 (636)
T KOG2394|consen  335 LLCVCWSP-DGKYIVTGGEDDLVTVWSFEE------RRVVARGQGHKSWVSVVAFDP---YT-TSTEEWNNFSGMDSTFS  403 (636)
T ss_pred             eEEEEEcC-CccEEEecCCcceEEEEEecc------ceEEEeccccccceeeEeecc---cc-ccccccccccccccccc
Confidence            99999999 999999999999999999998      889999999999999999997   22 12221111000000000


Q ss_pred             CcccccccCCCc---ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccc
Q 046899          322 GEKQDYGELKYP---IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKS  398 (407)
Q Consensus       322 ~~~~~~~~~~~~---v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~  398 (407)
                      .....++....+   ..+...|+.            ....+-..++-+.+.|..+.+||+.+..+.+ .+++..++.|.+
T Consensus       404 ~~~~~~~~r~~~~~S~~~~~~s~~------------~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~-~~p~~~~R~~~n  470 (636)
T KOG2394|consen  404 DVAHDFEIRANGTGSAEGCPLSSF------------NRINSVTYRFGSVGQDTQLCLWDLTEDVLVP-HPPLYRLRRHPN  470 (636)
T ss_pred             chhcccccccCCCCCcCCCccccc------------ccccceEEEeecccccceEEEEecchhhccc-CCchhhhhcCCC
Confidence            000111100000   001111111            1111125567799999999999998655443 445566666665

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.74  E-value=2e-16  Score=147.43  Aligned_cols=278  Identities=15%  Similarity=0.180  Sum_probs=180.3

Q ss_pred             hhhccCceEEEeeeecccCCCeeEEEEee----cccccCccceEEEEeecccCcccC-CcceeeEEEeeCCCceEEEEEe
Q 046899           18 QWKSLVPVLYDWLANHNLVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEAR-SPFVKKFKTIIHPGEVNRIREL   92 (407)
Q Consensus        18 ~w~~~~~~~y~~l~~~~~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~   92 (407)
                      +|....|.-+.+.  ++.+-+...+.+.|    .++.|+++|.+.+|...   .... .+.........|..+|+.+.|.
T Consensus       226 vW~~~~p~~Pe~~--~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~---~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  226 VWSLKNPNTPELV--LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLR---KGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             EEecCCCCCceEE--EecCCceeEEEeccCCcceEEeeccCceEEEEEcc---CCCCCCCcccccccccCCcCeEEEEEe
Confidence            4444444333322  23333455555555    47889999999999433   2222 2444555666799999999997


Q ss_pred             CCC-CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc
Q 046899           93 PQN-SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS  171 (407)
Q Consensus        93 ~~~-~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (407)
                      ... +.-+++++.||.|..|+++.................   .-..+..- +...+.+.+         .....++.|+
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~---~~~~~~~~-~~t~~~F~~---------~~p~~FiVGT  367 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHK---GQQSSKAV-GATSLKFEP---------TDPNHFIVGT  367 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhccccccccc---cccccccc-ceeeEeecc---------CCCceEEEEc
Confidence            621 245888999999999987754332111100000000   00000000 000111111         1112355566


Q ss_pred             CCCCCCCC---CCCCc-----CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899          172 GGNGDKPL---ESPSI-----GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH  243 (407)
Q Consensus       172 ~~~~i~i~---d~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  243 (407)
                      ..|.|.--   +....     +.+..+..|.++|+++.++|-+..+|.+++ |.+++||....... ....+..+...++
T Consensus       368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~-Pl~~~~~~~~~v~  445 (555)
T KOG1587|consen  368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS-PLLSLDSSPDYVT  445 (555)
T ss_pred             CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-cchhhhhccceee
Confidence            66665541   11111     223455678999999999999977777777 99999999874443 4556667788899


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +++|+|.....|+++..||.+.+||+....    ..|+.+.+.+....+.+.|++.|+ +++.|...|++.+|++..
T Consensus       446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~----~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDD----EEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eeEEcCcCceEEEEEcCCCceehhhhhccc----cCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence            999999888999999999999999998755    567777776777888899999899 558999999999999974

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.6e-16  Score=126.24  Aligned_cols=221  Identities=13%  Similarity=0.159  Sum_probs=148.5

Q ss_pred             ccccCccceEEEEeecccCc-ccCCcc-eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc
Q 046899           48 LEQATYKNRQRLYLSEQFNE-EARSPF-VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA  125 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~-~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  125 (407)
                      ++.+..++.+.++....... +...+. .+.+..-+|+++|+.++|..   .+|++|+. |.|+=|........      
T Consensus        25 l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es------   94 (325)
T KOG0649|consen   25 LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEES------   94 (325)
T ss_pred             EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhh------
Confidence            56677777776664442221 122222 22333358999999999873   46777764 99999998754321      


Q ss_pred             CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC
Q 046899          126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS  205 (407)
Q Consensus       126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~  205 (407)
                             .++-.+|.+..+                                          .+.-...-..|+++-..|.
T Consensus        95 -------~~~K~lwe~~~P------------------------------------------~~~~~~evPeINam~ldP~  125 (325)
T KOG0649|consen   95 -------LATKRLWEVKIP------------------------------------------MQVDAVEVPEINAMWLDPS  125 (325)
T ss_pred             -------ccchhhhhhcCc------------------------------------------cccCcccCCccceeEeccC
Confidence                   122234443321                                          1110112347899999998


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec
Q 046899          206 SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE  285 (407)
Q Consensus       206 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~  285 (407)
                      ... ++.++.|+.++-||+++++  ..+.+++|++.|.++.--. ....+++|+.||++|+||.++      .+.+..+.
T Consensus       126 enS-i~~AgGD~~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt------~k~v~~ie  195 (325)
T KOG0649|consen  126 ENS-ILFAGGDGVIYQVDLEDGR--IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKT------QKHVSMIE  195 (325)
T ss_pred             CCc-EEEecCCeEEEEEEecCCE--EEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccc------cceeEEec
Confidence            844 5555589999999999999  8899999999999998844 456788999999999999999      77777665


Q ss_pred             CC----------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          286 GH----------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       286 ~h----------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      ..          ...|-+++-  +..++ ++| ....+.+|.++..+....++- ..++..+.|-.|
T Consensus       196 ~yk~~~~lRp~~g~wigala~--~edWl-vCG-gGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d  257 (325)
T KOG0649|consen  196 PYKNPNLLRPDWGKWIGALAV--NEDWL-VCG-GGPKLSLWHLRSSESTCVFPI-PARVHLVDFVDD  257 (325)
T ss_pred             cccChhhcCcccCceeEEEec--cCceE-Eec-CCCceeEEeccCCCceEEEec-ccceeEeeeecc
Confidence            32          224666665  44555 344 467899999999877776653 445666777555

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=3.6e-17  Score=145.72  Aligned_cols=241  Identities=12%  Similarity=0.175  Sum_probs=169.0

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      .+.+..|.+.|+.+.|.| ....|++++.||+|++|+++....      +                              
T Consensus       287 k~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~------s------------------------------  329 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKK------S------------------------------  329 (577)
T ss_pred             eeeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCC------c------------------------------
Confidence            446667999999999998 566899999999999999954110      0                              


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC------
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST------  229 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------  229 (407)
                                              +....+++.++.+|.++|.|+++.+.+ ..+++|+.||+|+.|++-...-      
T Consensus       330 ------------------------~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~d  384 (577)
T KOG0642|consen  330 ------------------------AEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYD  384 (577)
T ss_pred             ------------------------cccceeeeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccC
Confidence                                    012335778899999999999999998 8999999999999996652211      


Q ss_pred             --CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEEEEEcCCCCCEEE
Q 046899          230 --PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSPDKSSVFG  305 (407)
Q Consensus       230 --~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~ll~  305 (407)
                        .....+.+|.+.|+.+++++ ....|++++.||+++.|+...      ..+ .+|..  -.+.-+++.+-.....+.+
T Consensus       385 p~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~------~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~  456 (577)
T KOG0642|consen  385 PSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTE------ESP-CTFGEPKEHGYPLSVDRTSSRPAHSL  456 (577)
T ss_pred             cchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCC------cCc-cccCCccccCCcceEeeccchhHhhh
Confidence              13446779999999999999 777899999999999999987      344 33332  2334467777654422222


Q ss_pred             EeeCCCeEEEEeCCCCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc
Q 046899          306 SSAEDGILNIWDHEKIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI  382 (407)
Q Consensus       306 s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~  382 (407)
                      +   +...+.+++...+.   ++.+.....+  ...-.++        +..+..+.+ ....+++..|..|+++|..   
T Consensus       457 ~---s~~~~~~~~~~~ev~s~~~~~~s~~~~--~~~~~~~--------in~vVs~~~-~~~~~~~hed~~Ir~~dn~---  519 (577)
T KOG0642|consen  457 A---SFRFGYTSIDDMEVVSDLLIFESSASP--GPRRYPQ--------INKVVSHPT-ADITFTAHEDRSIRFFDNK---  519 (577)
T ss_pred             h---hcccccccchhhhhhhheeeccccCCC--cccccCc--------cceEEecCC-CCeeEecccCCceeccccc---
Confidence            2   33444555444433   3333322221  2222222        111233332 5677788899999999999   


Q ss_pred             cCChHHHHHHHhhcccceeEeecc
Q 046899          383 YRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       383 ~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                         ++.++.....|...|+++++-
T Consensus       520 ---~~~~l~s~~a~~~svtslai~  540 (577)
T KOG0642|consen  520 ---TGKILHSMVAHKDSVTSLAID  540 (577)
T ss_pred             ---ccccchheeeccceecceeec
Confidence               899999999999999999874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=4.8e-16  Score=147.91  Aligned_cols=273  Identities=15%  Similarity=0.186  Sum_probs=176.2

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN  164 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  164 (407)
                      +...+.|+| -...++++...-.|+|||.+.++....+..+......+ ..+                    ........
T Consensus      1066 ~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~V-s~l--------------------~liNe~D~ 1123 (1387)
T KOG1517|consen 1066 PPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRV-SDL--------------------ELINEQDD 1123 (1387)
T ss_pred             CCceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCcc-cee--------------------eeecccch
Confidence            556677888 44567777766799999999887766554443221110 001                    11123334


Q ss_pred             CccccccCCCCCCCCCCCC-----cCceeeEee---c----ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899          165 SKNASKSGGNGDKPLESPS-----IGARGKYLG---H----EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV  232 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~---~----~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  232 (407)
                      ..+++++.||.|+||+--.     .+.+..+.+   +    .+.=.-+.|....+ +|+++|.-..|+|||...... +.
T Consensus      1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~-~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQV-VA 1201 (1387)
T ss_pred             hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEeccccee-Ee
Confidence            5677788888888886422     222222221   1    11113457777663 555556678999999987662 22


Q ss_pred             eeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC--EEEEEEcCCCCCEEEEeeCC
Q 046899          233 KVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA--VLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~--v~~v~~~~~~~~ll~s~~~d  310 (407)
                      ....+....|+++.-+-..++.+++|..||.|++||.|....   ...+...+.|+..  |..+.+.+.|-.-+++|+.|
T Consensus      1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred             ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc---cccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence            233455667888887665789999999999999999998543   3467788889887  99999998776535799999


Q ss_pred             CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc-eeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH
Q 046899          311 GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL-LTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV  389 (407)
Q Consensus       311 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~-~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~  389 (407)
                      |.|++||++.. ...++.....   .-.+         |. +.++.+ ..|...|++|+. +.|+||++.       |+.
T Consensus      1279 G~I~~~DlR~~-~~e~~~~iv~---~~~y---------Gs~lTal~V-H~hapiiAsGs~-q~ikIy~~~-------G~~ 1336 (1387)
T KOG1517|consen 1279 GDIQLLDLRMS-SKETFLTIVA---HWEY---------GSALTALTV-HEHAPIIASGSA-QLIKIYSLS-------GEQ 1336 (1387)
T ss_pred             CeEEEEecccC-cccccceeee---cccc---------Cccceeeee-ccCCCeeeecCc-ceEEEEecC-------hhh
Confidence            99999999985 2222221000   0000         10 222233 346888999998 999999996       776


Q ss_pred             HHHHhhc-------ccceeEeecc
Q 046899          390 LAELDKF-------KSHIFGCDKS  406 (407)
Q Consensus       390 ~~~~~~h-------~~~v~~~~~s  406 (407)
                      +..++.+       .+.+.|++|-
T Consensus      1337 l~~~k~n~~F~~q~~gs~scL~FH 1360 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFH 1360 (1387)
T ss_pred             hcccccCcccccCcCCCcceeeec
Confidence            6665533       3456777764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.8e-16  Score=136.72  Aligned_cols=151  Identities=17%  Similarity=0.212  Sum_probs=107.9

Q ss_pred             eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC-----CEEEEEeCC
Q 046899          187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV-----NLILTGSAD  261 (407)
Q Consensus       187 ~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~~l~tg~~d  261 (407)
                      +.....|...|.++.|+|++ ..|++.+.| ..++|+++++......+...-+.....+.|+. ++     .+++....-
T Consensus       179 ~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~  255 (398)
T KOG0771|consen  179 ILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPG  255 (398)
T ss_pred             hhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCC
Confidence            33445688999999999999 899999999 99999999986321222123334455677766 44     233334445


Q ss_pred             CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCc
Q 046899          262 NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYS  340 (407)
Q Consensus       262 g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s  340 (407)
                      +.|+.||+...+.+. .-+.++...-...|++++.+++|+++ |.|+.||.|-|++..+.+.++-.+ .|..-|+++.|+
T Consensus       256 ~~v~~~~~~~w~~~~-~l~~~~~~~~~~siSsl~VS~dGkf~-AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~  333 (398)
T KOG0771|consen  256 GGVRLCDISLWSGSN-FLRLRKKIKRFKSISSLAVSDDGKFL-ALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFS  333 (398)
T ss_pred             CceeEEEeeeecccc-ccchhhhhhccCcceeEEEcCCCcEE-EEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEc
Confidence            678888877643211 11222222234579999999999965 899999999999999988887665 588899999999


Q ss_pred             Cc
Q 046899          341 SD  342 (407)
Q Consensus       341 ~d  342 (407)
                      ||
T Consensus       334 Pd  335 (398)
T KOG0771|consen  334 PD  335 (398)
T ss_pred             CC
Confidence            99

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.5e-16  Score=141.30  Aligned_cols=175  Identities=18%  Similarity=0.299  Sum_probs=134.9

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      .+.||+|.|+|+.|+. +|.+|++|+.|-.+.|||.-..+.+..                                    
T Consensus        45 eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~Kllhs------------------------------------   87 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHS------------------------------------   87 (758)
T ss_pred             hhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeee------------------------------------
Confidence            4458999999999998 999999999999999999875433322                                    


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCC--------
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGS--------  228 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~--------  228 (407)
                                                     .-.+|...|.+++|-|. +..++++|+.|..|++||+...+        
T Consensus        88 -------------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~  136 (758)
T KOG1310|consen   88 -------------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM  136 (758)
T ss_pred             -------------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence                                           11379999999999985 33689999999999999998532        


Q ss_pred             CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC-CCCCc---eeeecCCCCCEEEEEEcCCCCCEE
Q 046899          229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD-GVGSP---IHKFEGHSAAVLCVQWSPDKSSVF  304 (407)
Q Consensus       229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-~~~~~---~~~~~~h~~~v~~v~~~~~~~~ll  304 (407)
                      .........|...|..|+-.|+.++.+.+++.||+|+-+|+|.+..- ....+   +..+...--...++..+|..+++|
T Consensus       137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l  216 (758)
T KOG1310|consen  137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL  216 (758)
T ss_pred             cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence            11234456788889999999966799999999999999999985420 00111   111111223578899999999999


Q ss_pred             EEeeCCCeEEEEeCCC
Q 046899          305 GSSAEDGILNIWDHEK  320 (407)
Q Consensus       305 ~s~~~d~~i~vwd~~~  320 (407)
                      |.|+.|-..++||.+.
T Consensus       217 aVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  217 AVGGSDPFARLYDRRR  232 (758)
T ss_pred             EecCCCchhhhhhhhh
Confidence            9999999999999653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.7e-15  Score=141.85  Aligned_cols=220  Identities=13%  Similarity=0.141  Sum_probs=147.4

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCC---CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDS---PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      ...|...+...+|+| +++.|+.++.+   ..|.+||+.+++...                                   
T Consensus       199 lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~-----------------------------------  242 (429)
T PRK01742        199 VNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKV-----------------------------------  242 (429)
T ss_pred             eccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEE-----------------------------------
Confidence            346788899999999 78888877643   358888876542110                                   


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE-eCCCcEEEE--EcCCCCCCce
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV-GDDSCLILW--DARSGSTPAV  232 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~-~~dg~i~iw--d~~~~~~~~~  232 (407)
                                                     +..+.++   ...++|+|+| +.|+.+ +.+|.+.||  |+.++.   .
T Consensus       243 -------------------------------l~~~~g~---~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~---~  284 (429)
T PRK01742        243 -------------------------------VASFRGH---NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGT---P  284 (429)
T ss_pred             -------------------------------EecCCCc---cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCC---e
Confidence                                           1111122   2357999999 555554 568876666  555444   3


Q ss_pred             eeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          233 KVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       233 ~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      ..+..+...+....|+| +++.|+.. ..+|...+|++....     .....+ .+..  ...+|+|+|++|+ ..+.++
T Consensus       285 ~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~-----~~~~~l-~~~~--~~~~~SpDG~~ia-~~~~~~  354 (429)
T PRK01742        285 SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASG-----GGASLV-GGRG--YSAQISADGKTLV-MINGDN  354 (429)
T ss_pred             EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCC-----CCeEEe-cCCC--CCccCCCCCCEEE-EEcCCC
Confidence            44556667788999999 78866654 457888999876521     222223 3433  4678999999774 555555


Q ss_pred             eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHH
Q 046899          312 ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA  391 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~  391 (407)
                       +.+||+.+++.......  .....+.|+||                  +..|+.++.++.+++|.+.+    .++..+.
T Consensus       355 -i~~~Dl~~g~~~~lt~~--~~~~~~~~sPd------------------G~~i~~~s~~g~~~~l~~~~----~~G~~~~  409 (429)
T PRK01742        355 -VVKQDLTSGSTEVLSST--FLDESPSISPN------------------GIMIIYSSTQGLGKVLQLVS----ADGRFKA  409 (429)
T ss_pred             -EEEEECCCCCeEEecCC--CCCCCceECCC------------------CCEEEEEEcCCCceEEEEEE----CCCCceE
Confidence             55699988654322222  12346778888                  88899998999888887641    1477888


Q ss_pred             HHhhcccceeEeeccC
Q 046899          392 ELDKFKSHIFGCDKSC  407 (407)
Q Consensus       392 ~~~~h~~~v~~~~~s~  407 (407)
                      .+.+|.+.+...+|||
T Consensus       410 ~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        410 RLPGSDGQVKFPAWSP  425 (429)
T ss_pred             EccCCCCCCCCcccCC
Confidence            8889999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=2e-16  Score=137.82  Aligned_cols=232  Identities=13%  Similarity=0.141  Sum_probs=175.3

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      .....+.|.. +|+.|+.|+..|.|..+|..+.....++......          .|+              .+..    
T Consensus       130 FGPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv----------~Dv--------------~~LH----  180 (545)
T KOG1272|consen  130 FGPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETV----------RDV--------------TFLH----  180 (545)
T ss_pred             cCCeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhh----------hhh--------------hhhc----
Confidence            3456677777 9999999999999999999998766554322111          000              0000    


Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH  243 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  243 (407)
                      +..+++......+.++|- .|..+..++.| ..|..+.|.|.. .+|++++..|.++--|+.+++  .+..+..-.+.+.
T Consensus       181 neq~~AVAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gk--lVa~~~t~~G~~~  255 (545)
T KOG1272|consen  181 NEQFFAVAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGK--LVASIRTGAGRTD  255 (545)
T ss_pred             chHHHHhhhhceEEEecC-CCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhh--hhHHHHccCCccc
Confidence            001222333334444442 34455555544 468999999998 899999999999999999999  6777777778888


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      .++-+| -...+-+|...|+|.+|....      .+++..+..|.++|.+|++.++|.|+ ||.+.|..++|||+++...
T Consensus       256 vm~qNP-~NaVih~GhsnGtVSlWSP~s------kePLvKiLcH~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~~~q  327 (545)
T KOG1272|consen  256 VMKQNP-YNAVIHLGHSNGTVSLWSPNS------KEPLVKILCHRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRNFYQ  327 (545)
T ss_pred             hhhcCC-ccceEEEcCCCceEEecCCCC------cchHHHHHhcCCCcceEEECCCCcEE-eecccccceeEeeeccccc
Confidence            899999 667899999999999999998      89999999999999999999999986 7999999999999999998


Q ss_pred             ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      +.++.. ..+...+++|..                    .+++.+....|.||.=
T Consensus       328 l~t~~t-p~~a~~ls~Sqk--------------------glLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  328 LHTYRT-PHPASNLSLSQK--------------------GLLALSYGDHVQIWKD  361 (545)
T ss_pred             cceeec-CCCccccccccc--------------------cceeeecCCeeeeehh
Confidence            887776 666777888654                    2445555568888853

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=2.1e-15  Score=125.82  Aligned_cols=208  Identities=14%  Similarity=0.182  Sum_probs=158.7

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG  162 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  162 (407)
                      ..+|+|.+|++ +...+|.+-....|.||.......                                            
T Consensus        10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------   44 (361)
T KOG1523|consen   10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------   44 (361)
T ss_pred             cCceeeeeecC-CCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence            57899999999 888999999988999998764421                                            


Q ss_pred             CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC-CCCCCceeeecccCcc
Q 046899          163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR-SGSTPAVKVEKAHNAD  241 (407)
Q Consensus       163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~  241 (407)
                                           .+...+++.|...|++|+|.|.. +.+++|+.|..-++|... .+.......+..++..
T Consensus        45 ---------------------w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA  102 (361)
T KOG1523|consen   45 ---------------------WEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA  102 (361)
T ss_pred             ---------------------ceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccc
Confidence                                 13456777899999999999998 789999999999999994 3443345566678999


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK-  320 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~-  320 (407)
                      ++++.|+| .++.||+|+.-..|.||-.+....-  +-....-+.+...|++++|+|++- |+|+|+.|+..||+..-- 
T Consensus       103 At~V~WsP-~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK  178 (361)
T KOG1523|consen  103 ATCVKWSP-KENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIK  178 (361)
T ss_pred             eeeEeecC-cCceEEeccCccEEEEEEEecccce--ehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeee
Confidence            99999999 8999999999999999877652210  111223345778999999999998 668999999999997531 


Q ss_pred             -----------------CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          321 -----------------IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       321 -----------------~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                       ++.+..+....+.+.++.|||.                  ++.|+-.+.|+++.+=|-.
T Consensus       179 ~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s------------------G~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  179 GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS------------------GNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC------------------CCEeeEecCCCceEEeecC
Confidence                             1112223334455666666665                  7888888888888888775

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=2e-14  Score=122.28  Aligned_cols=176  Identities=11%  Similarity=0.253  Sum_probs=137.0

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcceEEEEecCC
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADIHCVDWNPH  250 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~~~~  250 (407)
                      ..+++.+.++...+..+. ...+|.++.++.+.   |+++-++ .|.|||+++.+  .+.++.   .+...+.+++.++ 
T Consensus        68 r~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~R---LvV~Lee-~IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~-  139 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIF-FPTSILAVRMNRKR---LVVCLEE-SIYIYDIKDMK--LLHTIETTPPNPKGLCALSPNN-  139 (391)
T ss_pred             ceEEEEEcccCceEEEEe-cCCceEEEEEccce---EEEEEcc-cEEEEecccce--eehhhhccCCCccceEeeccCC-
Confidence            345666666666665554 45689999998743   5555554 49999999887  444443   3555677777777 


Q ss_pred             CCCEEEEEe--CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe-EEEEeCCCCCccccc
Q 046899          251 DVNLILTGS--ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI-LNIWDHEKIGEKQDY  327 (407)
Q Consensus       251 ~~~~l~tg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~  327 (407)
                      .+.++|--+  ..|.|.+||..+      .+++..+.+|++++.+++|+++|. +|||+|+.|+ |||+.+..++.+..|
T Consensus       140 ~n~ylAyp~s~t~GdV~l~d~~n------l~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  140 ANCYLAYPGSTTSGDVVLFDTIN------LQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             CCceEEecCCCCCceEEEEEccc------ceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeee
Confidence            666776533  358999999999      899999999999999999999999 5699999887 799999999999888


Q ss_pred             ccCCCc--ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccc
Q 046899          328 GELKYP--IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI  382 (407)
Q Consensus       328 ~~~~~~--v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~  382 (407)
                      .....+  |.+++|++|                  +.+|.+.+..++|+|+.+.+..
T Consensus       213 RRG~~~~~IySL~Fs~d------------------s~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  213 RRGTYPVSIYSLSFSPD------------------SQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eCCceeeEEEEEEECCC------------------CCeEEEecCCCeEEEEEecccc
Confidence            765444  678899998                  7788899999999999997533

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.65  E-value=1.6e-15  Score=134.51  Aligned_cols=168  Identities=17%  Similarity=0.267  Sum_probs=130.7

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA  159 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  159 (407)
                      ..|.+.|.+-+|+| +|.=|+|++.||.|++|.-... ..                                        
T Consensus       101 ~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGM-LR----------------------------------------  138 (737)
T KOG1524|consen  101 SAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGM-LR----------------------------------------  138 (737)
T ss_pred             hhhhhhhhhcccCC-CCceeeeecCCceEEEEeccch-HH----------------------------------------
Confidence            36999999999999 8888999999999999985432 11                                        


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                                                  .++-....+|.|++|.|+..+.+.+.+  +.+.|=-+....  ......+|.
T Consensus       139 ----------------------------Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~--k~i~WkAHD  186 (737)
T KOG1524|consen  139 ----------------------------STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS--KIIRWRAHD  186 (737)
T ss_pred             ----------------------------HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc--ceeEEeccC
Confidence                                        112234568999999999866666654  567766666555  456778999


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      +-|.+++|++ ..+++++|+.|-..++||..       +.++.+-..|+.+|++++|.|+.  +++.+| -++.|+=.. 
T Consensus       187 GiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~ITSva~npd~--~~~v~S-~nt~R~~~p-  254 (737)
T KOG1524|consen  187 GLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEYAITSVAFNPEK--DYLLWS-YNTARFSSP-  254 (737)
T ss_pred             cEEEEeecCc-cccceeecCCceeEEeeccc-------CcccccCChhccceeeeeecccc--ceeeee-eeeeeecCC-
Confidence            9999999999 78999999999999999987       68898888999999999999994  555666 456662111 


Q ss_pred             CCCcccccccCCCcccCCCCcCcc
Q 046899          320 KIGEKQDYGELKYPIIHPAYSSDM  343 (407)
Q Consensus       320 ~~~~~~~~~~~~~~v~~~~~s~d~  343 (407)
                                ..+.|..++||+|.
T Consensus       255 ----------~~GSifnlsWS~DG  268 (737)
T KOG1524|consen  255 ----------RVGSIFNLSWSADG  268 (737)
T ss_pred             ----------CccceEEEEEcCCC
Confidence                      23456778898883

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.65  E-value=2.6e-13  Score=127.01  Aligned_cols=289  Identities=22%  Similarity=0.387  Sum_probs=196.5

Q ss_pred             CccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC-CCcEEEEeCcCCCCcccccCcCCCCC
Q 046899           52 TYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD-SPDVLIWDVEAQPNRHAVLGAADSHP  130 (407)
Q Consensus        52 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~  130 (407)
                      ..++.+++|...       .+.........|...|..+.|+| ++..+++++. |+.+++|+.........+.+|...+.
T Consensus       131 ~~d~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  202 (466)
T COG2319         131 SLDGTVKLWDLS-------TPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS  202 (466)
T ss_pred             CCCccEEEEEec-------CCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceE
Confidence            336678888211       12345566668999999999999 6768888875 99999999987555444443322111


Q ss_pred             ---------------CCCCcEEEEeccccccc---cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc-eeeEe
Q 046899          131 ---------------DLDQSVVLWSIQDHVSA---LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA-RGKYL  191 (407)
Q Consensus       131 ---------------~~d~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~  191 (407)
                                     ..|+.+.+|+.......   +..+.... ..........+++++.++.+++|+...... ...+.
T Consensus       203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  281 (466)
T COG2319         203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS  281 (466)
T ss_pred             EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence                           22888999987744322   22333332 112222224566899999999999987665 44556


Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cccCcceEEEEecCCCCCEEEEE-eCCCcEEEEe
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KAHNADIHCVDWNPHDVNLILTG-SADNSIHMFD  268 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd  268 (407)
                      .|...|.++.|+|++ ..+++++.|+.+++||.++..  .....  ..|...+..+.+ +.++..++.+ ..|+.+.+|+
T Consensus       282 ~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         282 GHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK--LLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             cCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc--eEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeee
Confidence            788999999999977 567778889999999988776  33333  377778999999 5243555555 6789999999


Q ss_pred             CCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccc
Q 046899          269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIET  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~  348 (407)
                      +..      ........... .+..+.+.+ ....+..+..++.+.+|+................+....++++      
T Consensus       358 ~~~------~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  423 (466)
T COG2319         358 LRT------GKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD------  423 (466)
T ss_pred             cCC------CceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCC------
Confidence            988      44333333222 289999999 6434323788999999999987666555543333333333333      


Q ss_pred             cceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                  +..+++++.+..+++|+..
T Consensus       424 ------------~~~~~~~~~~~~~~~~~~~  442 (466)
T COG2319         424 ------------GKSLASGSSDNTIRLWDLK  442 (466)
T ss_pred             ------------CcEEEEecCCCcEEEEecc
Confidence                        5667778888899999987

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.64  E-value=1.1e-14  Score=140.88  Aligned_cols=272  Identities=14%  Similarity=0.164  Sum_probs=175.0

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      ...+..|...|..++.++..+.+++||+.||+|++||..+.....      ..    -+....|+..+.         ..
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s----~rS~ltys~~~s---------r~ 1101 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------GS----ARSELTYSPEGS---------RV 1101 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------ce----eeeeEEEeccCC---------ce
Confidence            345556999999999998777999999999999999987542210      00    123334443221         11


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCc--Cce-----eeEeec-ccCE-EEEEECCCCCc-EEEEEeCCCcEEEEEcC
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSI--GAR-----GKYLGH-EDTV-EDVQFCPSSAQ-EFCSVGDDSCLILWDAR  225 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--~~~-----~~~~~~-~~~v-~~l~~~~~~~~-~l~s~~~dg~i~iwd~~  225 (407)
                      ...........++.++.||.+++.++...  +..     .....+ .+.+ ..-+|...... .++.+...+.|..||++
T Consensus      1102 ~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1102 EKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred             EEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence            12222333455777889999988776552  111     111111 2233 33344433223 78888889999999999


Q ss_pred             CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-CCCCEEEEEEcCCCC---
Q 046899          226 SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-HSAAVLCVQWSPDKS---  301 (407)
Q Consensus       226 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~---  301 (407)
                      +.............+.|++++.+| .++++++|+..|.+.+||+|-      +.++..+.- +..+++.+..+|-.+   
T Consensus      1182 ~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF------~~~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1182 MRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF------RVPILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred             hhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeec------CceeecccCcccCCcceEEeeccCCCCc
Confidence            876322223334457899999999 899999999999999999998      788877753 557888888877543   


Q ss_pred             CEEEEee-CCCeEEEEeCCCCCcccccccC-CCcccC--CCC----cCcchhccccceeee-eEeeCccceeeeEEEeee
Q 046899          302 SVFGSSA-EDGILNIWDHEKIGEKQDYGEL-KYPIIH--PAY----SSDMLDIETKLLTSI-GMHLIHGRLLVCLTMVKV  372 (407)
Q Consensus       302 ~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~-~~~v~~--~~~----s~d~~~~~~~~~~~~-~~~~~~~~~i~~~~~d~~  372 (407)
                      ..+++++ ..+.|.+|++.++.+-..+... +.+...  ++-    +|+       ....+ .....-+..+++|+.|..
T Consensus      1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~-------~~~~~~~~~~~~~~~~ltggsd~k 1327 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPD-------SLAGISCGVCEKNGFLLTGGSDMK 1327 (1431)
T ss_pred             eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCC-------cccceeeecccCCceeeecCCccc
Confidence            4444444 5788999999998766666554 222111  111    122       11111 222223567889999999


Q ss_pred             EEEeeccc
Q 046899          373 LEIWRMID  380 (407)
Q Consensus       373 i~iwd~~~  380 (407)
                      ||.||...
T Consensus      1328 IR~wD~~~ 1335 (1431)
T KOG1240|consen 1328 IRKWDPTR 1335 (1431)
T ss_pred             eeeccCCC
Confidence            99999974

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.6e-14  Score=129.42  Aligned_cols=280  Identities=13%  Similarity=0.188  Sum_probs=188.4

Q ss_pred             ceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCC-CC---------------CCcE
Q 046899           73 FVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHP-DL---------------DQSV  136 (407)
Q Consensus        73 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~---------------d~~i  136 (407)
                      .+..++.++|....+.|..+|+...++|||.+.-.|++||+......  +.-|...-+ ..               |++|
T Consensus        41 rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~I  118 (703)
T KOG2321|consen   41 RIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTI  118 (703)
T ss_pred             HHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCcee
Confidence            34556667899999999999965667889999999999999865322  111111100 00               3333


Q ss_pred             EEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC
Q 046899          137 VLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD  216 (407)
Q Consensus       137 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d  216 (407)
                      .+..-.+....... |.....+........+..++....+.-+++..|..+..+....+.++++..++.. .+|++|+.+
T Consensus       119 efHak~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~  196 (703)
T KOG2321|consen  119 EFHAKYGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTED  196 (703)
T ss_pred             eehhhcCeeeeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEecccC
Confidence            33221111111111 1111222333444556677778888888999999999998888999999999988 799999999


Q ss_pred             CcEEEEEcCCCCCCce----eeecccCc-----ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-C
Q 046899          217 SCLILWDARSGSTPAV----KVEKAHNA-----DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-G  286 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~----~~~~~~~~-----~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~  286 (407)
                      |.|..||.+..+....    .....|.+     .|+++.|+. +|-.+++|+.+|.|.|||+|.      .+++..-. +
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa------~~pl~~kdh~  269 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRA------SKPLLVKDHG  269 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEccc------CCceeecccC
Confidence            9999999998762111    11222333     499999998 799999999999999999999      55554432 3


Q ss_pred             CCCCEEEEEEcCCCCC-EEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceee
Q 046899          287 HSAAVLCVQWSPDKSS-VFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV  365 (407)
Q Consensus       287 h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~  365 (407)
                      ..-+|..+.|.+.+.. .++|. ....++|||-.+++....++.... +..+++-|+                  ++.++
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~------------------sGm~f  329 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSD-LNDFCFVPG------------------SGMFF  329 (703)
T ss_pred             CccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCC-cCceeeecC------------------CceEE
Confidence            4568999999776322 33343 467899999999888777664333 555555444                  77777


Q ss_pred             eEEEeeeEEEeecccccc
Q 046899          366 CLTMVKVLEIWRMIDLIY  383 (407)
Q Consensus       366 ~~~~d~~i~iwd~~~~~~  383 (407)
                      .+..++.+..|=+..+..
T Consensus       330 ~Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  330 TANESSKMHTYYIPSLGP  347 (703)
T ss_pred             EecCCCcceeEEccccCC
Confidence            887887777665554333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.63  E-value=3e-13  Score=122.77  Aligned_cols=277  Identities=8%  Similarity=0.114  Sum_probs=160.2

Q ss_pred             ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEe-eCCCcEEEEeCcCCCCcccccCcCCC
Q 046899           50 QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATH-TDSPDVLIWDVEAQPNRHAVLGAADS  128 (407)
Q Consensus        50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~~  128 (407)
                      +...++.+.+|   ++..  . ......+.+.+.+....++++| ++++|+++ ..++.|.+|++...............
T Consensus         7 ~~~~~~~I~~~---~~~~--~-g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~   79 (330)
T PRK11028          7 ASPESQQIHVW---NLNH--E-GALTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP   79 (330)
T ss_pred             EcCCCCCEEEE---EECC--C-CceeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC
Confidence            34567778888   3321  1 2334455556667788999999 77776555 45789999999732111111000000


Q ss_pred             CCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC----ceeeEeecccCEEEEEECC
Q 046899          129 HPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG----ARGKYLGHEDTVEDVQFCP  204 (407)
Q Consensus       129 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~  204 (407)
                                           ..+..+.+.+.++.  .+++...++.+.+|++....    .+..+ .+.....+++++|
T Consensus        80 ---------------------~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p  135 (330)
T PRK11028         80 ---------------------GSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDP  135 (330)
T ss_pred             ---------------------CCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCC
Confidence                                 00111111112211  12222335666777664321    22222 2234467789999


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCCCCc-----eeeecccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCC
Q 046899          205 SSAQEFCSVGDDSCLILWDARSGSTPA-----VKVEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVG  278 (407)
Q Consensus       205 ~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~  278 (407)
                      ++..++++...++.|.+||+++.....     .... ........+.|+| +++++++++. ++.|.+||++...  +..
T Consensus       136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~--~~~  211 (330)
T PRK11028        136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPH--GEI  211 (330)
T ss_pred             CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCC--CCE
Confidence            995555666678999999998633100     0111 1234467899999 8888887776 8999999997411  002


Q ss_pred             CceeeecCC------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC---CCcccCCCCcCcchhcccc
Q 046899          279 SPIHKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL---KYPIIHPAYSSDMLDIETK  349 (407)
Q Consensus       279 ~~~~~~~~h------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~d~~~~~~~  349 (407)
                      +.+.++..+      ......+.++|++++++++...++.|.+|++........+.++   ......+.++||       
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d-------  284 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS-------  284 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC-------
Confidence            233333221      1233468999999998866566899999999654322222211   123345667666       


Q ss_pred             ceeeeeEeeCccceeeeEEE-eeeEEEeecc
Q 046899          350 LLTSIGMHLIHGRLLVCLTM-VKVLEIWRMI  379 (407)
Q Consensus       350 ~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~  379 (407)
                                 +.+|+++.. +++|.||++.
T Consensus       285 -----------g~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        285 -----------GKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             -----------CCEEEEEEccCCcEEEEEEc
Confidence                       777776554 7899999885

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.63  E-value=1.3e-14  Score=132.02  Aligned_cols=262  Identities=12%  Similarity=0.140  Sum_probs=186.9

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecccccccccc
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSALAA  150 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~~~  150 (407)
                      .|+.++|-| +|..|+.+.. ..+.+||.+.+....++.+|.+.+.+.              |..+.+|...-....-..
T Consensus        14 ci~d~afkP-DGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKP-DGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS   91 (1081)
T ss_pred             chheeEECC-CCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeec
Confidence            899999999 5554444433 389999999999999999988765443              888999986544333334


Q ss_pred             CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      +.+.+.++.+++....+++.+ -...-+|....... ...+ ....|.+.+|..+| .+|+.|-.||+|.+-+-......
T Consensus        92 H~D~IQCMsFNP~~h~LasCs-LsdFglWS~~qK~V-~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCS-LSDFGLWSPEQKSV-SKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcc-hhhccccChhhhhH-Hhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcce
Confidence            555555666666555555433 33345565443222 2221 34578899999999 89999999999999875443322


Q ss_pred             ceeeecccCcceEEEEecCCCC----CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899          231 AVKVEKAHNADIHCVDWNPHDV----NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~~~----~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                      .+...-+..++|.+++|+|..+    ..+++.....++.++.+.       ++.+..-+.-.-...|+.+.++|.+++ .
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-------G~~Igk~r~L~FdP~CisYf~NGEy~L-i  239 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-------GKQIGKDRALNFDPCCISYFTNGEYIL-L  239 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-------ceeecccccCCCCchhheeccCCcEEE-E
Confidence            2233345778999999999432    467888888888888776       344443333334457899999999986 7


Q ss_pred             eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          307 SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       307 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      |+.|+.+++|- +.+-.+.+....+..|+.++..|+                  +..++.|+.||+|--|++.
T Consensus       240 GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN------------------sQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  240 GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN------------------SQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC------------------CceEEEEEccCeeehhhhH
Confidence            88899999995 556667777777888888777776                  8899999999999999885

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=4.7e-14  Score=122.04  Aligned_cols=175  Identities=20%  Similarity=0.226  Sum_probs=134.5

Q ss_pred             EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899          198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV  277 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~  277 (407)
                      .+++|+.+| ..+++|+.||++|+|+..+..  .+.....|...|.++.|+| |+.+|++-+.| ..+||+.++      
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~------  216 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNT------  216 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEecc------
Confidence            789999998 799999999999999977666  4667778999999999999 99999999999 899999999      


Q ss_pred             CCceeeecC--CCCCEEEEEEcCCC---C-CEEEEeeCCCeEEEEeCCCCCc-----ccccccCCCcccCCCCcCcchhc
Q 046899          278 GSPIHKFEG--HSAAVLCVQWSPDK---S-SVFGSSAEDGILNIWDHEKIGE-----KQDYGELKYPIIHPAYSSDMLDI  346 (407)
Q Consensus       278 ~~~~~~~~~--h~~~v~~v~~~~~~---~-~ll~s~~~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~s~d~~~~  346 (407)
                      +.++.....  .......+.|+.++   . ++++....-+.|+.||+.....     ..........|++++.|+|    
T Consensus       217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d----  292 (398)
T KOG0771|consen  217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD----  292 (398)
T ss_pred             CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC----
Confidence            666665542  33456667787666   2 2444555567777777664332     2222333446777888777    


Q ss_pred             cccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHH-HhhcccceeEeeccC
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAE-LDKFKSHIFGCDKSC  407 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~  407 (407)
                                    +.+++-|+.||.|-|++..      +-++++. -+.|...|+.|.|||
T Consensus       293 --------------Gkf~AlGT~dGsVai~~~~------~lq~~~~vk~aH~~~VT~ltF~P  334 (398)
T KOG0771|consen  293 --------------GKFLALGTMDGSVAIYDAK------SLQRLQYVKEAHLGFVTGLTFSP  334 (398)
T ss_pred             --------------CcEEEEeccCCcEEEEEec------eeeeeEeehhhheeeeeeEEEcC
Confidence                          9999999999999999997      4444443 347999999999997

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=8.6e-14  Score=119.24  Aligned_cols=176  Identities=20%  Similarity=0.309  Sum_probs=136.3

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCC--CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDS--PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      .-...+..|.-++....++|+||..  ..++|||+...                   .++|...+-.             
T Consensus       146 a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-------------------~qiw~aKNvp-------------  193 (412)
T KOG3881|consen  146 ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-------------------KQIWSAKNVP-------------  193 (412)
T ss_pred             ecCCceeeeccCCCCCceEecCchhcccceeeeecccc-------------------eeeeeccCCC-------------
Confidence            3446788888888888899999998  88999999754                   2344332100             


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                       ...                       .  .+. -.-.++++.|.+.  . +.|++++.-+.+++||.+.++.| +..+.
T Consensus       194 -nD~-----------------------L--~Lr-VPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRP-V~~fd  244 (412)
T KOG3881|consen  194 -NDR-----------------------L--GLR-VPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRP-VAQFD  244 (412)
T ss_pred             -Ccc-----------------------c--cce-eeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcc-eeEec
Confidence             000                       0  000 1124566777765  4 78999999999999999988765 56666


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      ....+++++...| +++++++|..-|.+..||++.      ++.+.. +++..+.|++|..+|.+++ +|++|-|..+||
T Consensus       245 ~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~------~kl~g~~~kg~tGsirsih~hp~~~~-las~GLDRyvRI  316 (412)
T KOG3881|consen  245 FLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRG------GKLLGCGLKGITGSIRSIHCHPTHPV-LASCGLDRYVRI  316 (412)
T ss_pred             cccCcceeeeecC-CCcEEEEecccchhheecccC------ceeeccccCCccCCcceEEEcCCCce-EEeeccceeEEE
Confidence            6788899999999 999999999999999999998      666655 8889999999999999995 589999999999


Q ss_pred             EeCCCCCccc
Q 046899          316 WDHEKIGEKQ  325 (407)
Q Consensus       316 wd~~~~~~~~  325 (407)
                      +|+.+.+.+.
T Consensus       317 hD~ktrkll~  326 (412)
T KOG3881|consen  317 HDIKTRKLLH  326 (412)
T ss_pred             eecccchhhh
Confidence            9999955543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.60  E-value=5.8e-16  Score=143.95  Aligned_cols=201  Identities=19%  Similarity=0.317  Sum_probs=147.2

Q ss_pred             cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc
Q 046899          184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS  263 (407)
Q Consensus       184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~  263 (407)
                      .+.+..+.+|...|+|..|...| .++++|+.|..++||...+..  +.....+|.+.|+.++.+. +..++++++.|..
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--CLASCRGHSGDITDLAVSS-NNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchh--hhccCCCCccccchhccch-hhhhhhhcccCce
Confidence            34456677899999999999999 899999999999999998888  7889999999999999998 7789999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-----CCCcccC--
Q 046899          264 IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-----LKYPIIH--  336 (407)
Q Consensus       264 i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~--  336 (407)
                      |++|.+..      +.++..+.+|++.|++++|+|-     ++.+.||++++||.+- ..+...+.     .+..+-.  
T Consensus       256 IrvWrl~~------~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~  323 (1113)
T KOG0644|consen  256 IRVWRLPD------GAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSIL  323 (1113)
T ss_pred             EEEEecCC------CchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccc-cccccCCCCCCcccccceeeee
Confidence            99999999      9999999999999999999995     3778899999999881 11111100     0000000  


Q ss_pred             -----CCCcC---c-------chhccccceeeeeEeeC--ccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccc
Q 046899          337 -----PAYSS---D-------MLDIETKLLTSIGMHLI--HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSH  399 (407)
Q Consensus       337 -----~~~s~---d-------~~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~  399 (407)
                           ..|..   |       +........--+|+...  -...+++.-.+-.+++|++.      +|++++.+.+|.+.
T Consensus       324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~------~g~l~H~l~ghsd~  397 (1113)
T KOG0644|consen  324 FENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY------TGQLLHNLMGHSDE  397 (1113)
T ss_pred             ccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc------cchhhhhhcccccc
Confidence                 11100   0       00000000101111111  01233445556689999999      89999999999999


Q ss_pred             eeEeecc
Q 046899          400 IFGCDKS  406 (407)
Q Consensus       400 v~~~~~s  406 (407)
                      ++-+.|-
T Consensus       398 ~yvLd~H  404 (1113)
T KOG0644|consen  398 VYVLDVH  404 (1113)
T ss_pred             eeeeeec
Confidence            9888764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=2.3e-13  Score=113.74  Aligned_cols=230  Identities=14%  Similarity=0.234  Sum_probs=165.3

Q ss_pred             CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      .-|...-.|.++   ++.....+.+.|+     ......+....-.+..|...|++|.|.| ..+.|+|++.|..-.||.
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy-----~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIY-----SMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEE-----EecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence            346666688774   6666666667777     2233333444455557999999999999 777899999999999998


Q ss_pred             CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee
Q 046899          113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG  192 (407)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~  192 (407)
                      ..++.                                                                 +-++...+..
T Consensus        84 ~~~~~-----------------------------------------------------------------~WkptlvLlR   98 (361)
T KOG1523|consen   84 QPSGG-----------------------------------------------------------------TWKPTLVLLR   98 (361)
T ss_pred             cCCCC-----------------------------------------------------------------eeccceeEEE
Confidence            74321                                                                 1123345556


Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      +...++++.|+|.+ +.||+|+....|.+|-++....  .....-..+.+.|++++|+| ++-++++|+.|+.+|+|..-
T Consensus        99 iNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSay  176 (361)
T KOG1523|consen   99 INRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAY  176 (361)
T ss_pred             eccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEe
Confidence            88899999999998 8999999999999998876541  11223345678899999999 88899999999999999742


Q ss_pred             C-----CC---CCCC----CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC-cccccccCCCcccCC
Q 046899          271 K-----LT---SDGV----GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG-EKQDYGELKYPIIHP  337 (407)
Q Consensus       271 ~-----~~---~~~~----~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~  337 (407)
                      -     ..   .-+.    ++++.++....+.|..+.|+|+|..| +-.+.|.++.+=|..... .++.......|..++
T Consensus       177 IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l-awv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~  255 (361)
T KOG1523|consen  177 IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL-AWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSV  255 (361)
T ss_pred             eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe-eEecCCCceEEeecCCCchhccchhhccCCceee
Confidence            1     00   0000    34445555567899999999999965 788999999999988764 345544444665555


Q ss_pred             CC
Q 046899          338 AY  339 (407)
Q Consensus       338 ~~  339 (407)
                      .|
T Consensus       256 ~~  257 (361)
T KOG1523|consen  256 SW  257 (361)
T ss_pred             Ee
Confidence            54

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.8e-13  Score=125.04  Aligned_cols=172  Identities=14%  Similarity=0.122  Sum_probs=115.7

Q ss_pred             EEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CCcEEEE--eCCCC
Q 046899          198 EDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMF--DRRKL  272 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vw--d~~~~  272 (407)
                      ...+|+|+|..++++.+.+|  .|.+||+.++.   ...+..+...+....|+| +++.|+..+. ++...+|  |+.. 
T Consensus       246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~-  320 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING-  320 (429)
T ss_pred             CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC-
Confidence            35799999944444445555  48889998776   333344455678899999 8887776665 4555555  5544 


Q ss_pred             CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc
Q 046899          273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL  350 (407)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  350 (407)
                           + ....+..+........|+|+|++|+.++..+  ..|.+||+.+++. ..+.. ......+.||||        
T Consensus       321 -----g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpD--------  384 (429)
T PRK03629        321 -----G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD-TFLDETPSIAPN--------  384 (429)
T ss_pred             -----C-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC-CCCCCCceECCC--------
Confidence                 3 2334444444567889999999875444433  3588899987643 33322 122346778888        


Q ss_pred             eeeeeEeeCccceeeeEEEee---eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          351 LTSIGMHLIHGRLLVCLTMVK---VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       351 ~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                                +..|+..+.++   .+.++++.       +.....+.+|.+.+...+|||
T Consensus       385 ----------G~~i~~~s~~~~~~~l~~~~~~-------G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        385 ----------GTMVIYSSSQGMGSVLNLVSTD-------GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ----------CCEEEEEEcCCCceEEEEEECC-------CCCeEECccCCCCcCCcccCC
Confidence                      88888877776   47777774       666677888999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2.6e-13  Score=127.54  Aligned_cols=263  Identities=16%  Similarity=0.184  Sum_probs=168.6

Q ss_pred             EEeeCCCceEEEEEeCCCC--eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           78 KTIIHPGEVNRIRELPQNS--KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~--~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      .+-+|..++..+.+.|...  .++.+++.||.|++||...+...+++..+...          ..+.-. ..+....  .
T Consensus        52 ~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v----------~~~~~~-~~~a~~s--~  118 (792)
T KOG1963|consen   52 SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV----------HALVYK-PAQADIS--A  118 (792)
T ss_pred             hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce----------eEEEec-hhHhCcc--c
Confidence            4447999999999988655  57889999999999999988776655332111          111000 0000000  0


Q ss_pred             cccccCCCCCcccc--ccCCCCCCCCCCCC--cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--
Q 046899          156 KSTASGGANSKNAS--KSGGNGDKPLESPS--IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--  229 (407)
Q Consensus       156 ~~~~~~~~~~~~~~--~~~~~~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--  229 (407)
                      ........-..+..  ....+.++-+.+.+  ......+.+|.. -.+|.+++.+ . +...-.+..+.+|+..+...  
T Consensus       119 ~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~g-e-~~~i~~~~~~~~~~v~~~~~~~  195 (792)
T KOG1963|consen  119 NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSG-E-FKGIVHMCKIHIYFVPKHTKHT  195 (792)
T ss_pred             eeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCc-e-EEEEEEeeeEEEEEecccceee
Confidence            00000000000000  00001111011110  011111122322 3578888887 4 45555678899999887431  


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                      .....-..|...+++.+++| +++++|+|..||.|.+|.--....+  ......+..|...|++++|+++|.+|+ |||.
T Consensus       196 ~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~--~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~  271 (792)
T KOG1963|consen  196 SSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDD--SETCTLLHWHHDEVNSLSFSSDGAYLL-SGGR  271 (792)
T ss_pred             ccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccc--cccceEEEecccccceeEEecCCceEe-eccc
Confidence            11122235677789999999 9999999999999999964331110  345567788999999999999999986 9999


Q ss_pred             CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       310 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .+.+-+|.+.+++ .+-++....+|..+.+|||                  ++..+....|..|++-...
T Consensus       272 E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~d------------------s~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  272 EGVLVLWQLETGK-KQFLPRLGSPILHIVVSPD------------------SDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             ceEEEEEeecCCC-cccccccCCeeEEEEEcCC------------------CCeEEEEecCceEEEEecc
Confidence            9999999999977 7777888999999999998                  6667777778888888876

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.56  E-value=1.8e-13  Score=123.42  Aligned_cols=213  Identities=16%  Similarity=0.181  Sum_probs=165.6

Q ss_pred             CCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccC
Q 046899           93 PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSG  172 (407)
Q Consensus        93 ~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (407)
                      |+...++|....||.+|+||...++....+.......  ..++-..|.+............... .........++.|..
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s--~t~~~~~w~L~~~~s~~k~~~~~~~-~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS--GTCTYTKWGLSADYSPMKWLSLEKA-KKASLDTSMLVLGTP   78 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhcc--CcceeEEEEEEeccchHHHHhHHHH-hhccCCceEEEeecC
Confidence            4467899999999999999999887766654432221  1456677775543221111100000 001111245677889


Q ss_pred             CCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899          173 GNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH  250 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~  250 (407)
                      .|.+.+++...++....+.  .|.+.|+++.++.+- ..|.+++.|+.+..|+.....  ........+..+.+++.+| 
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~--~~~~~~~~~~~~~sl~is~-  154 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKV--IIRIWKEQKPLVSSLCISP-  154 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccce--eeeeeccCCCccceEEEcC-
Confidence            9999999999999888776  589999999998876 689999999999999999887  6777778888899999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC-----CCCEEEEeeCCCeEEEEeCCC
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD-----KSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      |+..+++++  +.|++||+++      .+.+.+|.+|.++|++++|.-+     |.++|.+...+.-|.+|-+..
T Consensus       155 D~~~l~~as--~~ik~~~~~~------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTAS--RQIKVLDIET------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEecc--ceEEEEEccC------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            899999887  7899999999      8999999999999999999887     888988888888899998775

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.3e-12  Score=122.57  Aligned_cols=173  Identities=16%  Similarity=0.099  Sum_probs=112.3

Q ss_pred             EEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CCc--EEEEeCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNS--IHMFDRRK  271 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~--i~vwd~~~  271 (407)
                      ..+.+|+|+|..++++.+.+|  .|.+||+.+++   ...+..+.......+|+| +++.|+..+. +|.  |.++|+..
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence            346799999955555666665  59999998776   334445555556789999 8887776653 455  55566654


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccc
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETK  349 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~  349 (407)
                            ++ ...+..+.......+|+|+|++|+.+...++  .|.+||+.+++.. .+.. ......+.|+||       
T Consensus       326 ------g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spd-------  389 (433)
T PRK04922        326 ------GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPN-------  389 (433)
T ss_pred             ------CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCC-------
Confidence                  33 3333323344557899999998754444333  6999999875543 3322 223456788888       


Q ss_pred             ceeeeeEeeCccceeeeEEEe---eeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          350 LLTSIGMHLIHGRLLVCLTMV---KVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       350 ~~~~~~~~~~~~~~i~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                                 +..|+..+.+   +.|.+++..       +.....+..+.+.+...+||+
T Consensus       390 -----------G~~i~~~s~~~g~~~L~~~~~~-------g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        390 -----------GSMVLYATREGGRGVLAAVSTD-------GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             -----------CCEEEEEEecCCceEEEEEECC-------CCceEEcccCCCCCCCCccCC
Confidence                       6666655553   367777775       444556666677788888886

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=3.6e-13  Score=111.28  Aligned_cols=151  Identities=23%  Similarity=0.411  Sum_probs=108.4

Q ss_pred             EEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEE--EeCCCcEEE
Q 046899          198 EDVQFCPSSAQEFCSVGD---------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT--GSADNSIHM  266 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~t--g~~dg~i~v  266 (407)
                      ..+.|+|+|..+++....         -+...+|.++....+.........++|.+++|+| +++.||+  |..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            367899998555555441         2456777776554333333233455799999999 7777654  446789999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC---CCeEEEEeCCCCCcccccccCCCcccCCCCcCcc
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDM  343 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~  343 (407)
                      ||++       .+++..+.  ...++.+.|+|+|++|+ +++.   .|.|.+||+++.+.+......  .++.++|||| 
T Consensus        88 yd~~-------~~~i~~~~--~~~~n~i~wsP~G~~l~-~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPd-  154 (194)
T PF08662_consen   88 YDVK-------GKKIFSFG--TQPRNTISWSPDGRFLV-LAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPD-  154 (194)
T ss_pred             EcCc-------ccEeEeec--CCCceEEEECCCCCEEE-EEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCC-
Confidence            9997       47777775  46788999999999775 5543   467999999987777666533  3678899999 


Q ss_pred             hhccccceeeeeEeeCccceeeeEEE------eeeEEEeecc
Q 046899          344 LDIETKLLTSIGMHLIHGRLLVCLTM------VKVLEIWRMI  379 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~i~~~~~------d~~i~iwd~~  379 (407)
                                       +.++++++.      |..++||++.
T Consensus       155 -----------------Gr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  155 -----------------GRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             -----------------CCEEEEEEeccceeccccEEEEEec
Confidence                             777776654      6699999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=2.2e-14  Score=127.82  Aligned_cols=184  Identities=20%  Similarity=0.331  Sum_probs=138.6

Q ss_pred             ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC-CCCEEEEEeCCCcE
Q 046899          186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLILTGSADNSI  264 (407)
Q Consensus       186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i  264 (407)
                      ..+.+.+|++.|+|+.|+.+| .+|++|+.|-.+.|||.-..+. ....-.+|...|.++.|-|. +.+++++|..|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~Kl-lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKL-LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcce-eeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            456788999999999999999 8999999999999999986552 44556799999999999884 34678899999999


Q ss_pred             EEEeCCCCCCCCC----CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCc
Q 046899          265 HMFDRRKLTSDGV----GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYS  340 (407)
Q Consensus       265 ~vwd~~~~~~~~~----~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  340 (407)
                      ++||+...+..++    .+....+..|...|..++-.|++++.|-+++.||+|+-+|++.......  ..+-++..+.+.
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p--~~~~~~~l~ny~  197 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP--DEDCPSILVNYN  197 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc--cccccHHHHHhc
Confidence            9999986443221    4566677789999999999999988889999999999999996433221  112222233333


Q ss_pred             CcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          341 SDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      +++..     ...+-.......+++.|+.|.-.++||.
T Consensus       198 ~~lie-----lk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  198 PQLIE-----LKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             hhhhe-----eeeeeecCCCCceEEecCCCchhhhhhh
Confidence            33211     1222333344568889999999999995

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.54  E-value=2.1e-14  Score=127.62  Aligned_cols=167  Identities=18%  Similarity=0.244  Sum_probs=129.1

Q ss_pred             cccccCCCCCCCCCCCCcCceeeEe----ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---CC---------
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYL----GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS---TP---------  230 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~---------  230 (407)
                      ++.+-..|.+.+.|....+....+.    -....|+|++|-|.+..+|+.+-.+|.+.+||.....   .+         
T Consensus       188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~  267 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD  267 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence            4445555666655554422111111    1246899999999887899999999999999874211   00         


Q ss_pred             --------------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEE
Q 046899          231 --------------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQW  296 (407)
Q Consensus       231 --------------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~  296 (407)
                                    .+.....-.+.|+.++|+| |+.+||+.+.||.+||||..+      .+++..++..-+...|++|
T Consensus       268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt------~eLlg~mkSYFGGLLCvcW  340 (636)
T KOG2394|consen  268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDT------QELLGVMKSYFGGLLCVCW  340 (636)
T ss_pred             eeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccH------HHHHHHHHhhccceEEEEE
Confidence                          0111111234788999999 999999999999999999998      7788888888889999999


Q ss_pred             cCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899          297 SPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSS  341 (407)
Q Consensus       297 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~  341 (407)
                      +|||+|| ++|++|.-|.||.+...+.+..=.+|..+|..++|.|
T Consensus       341 SPDGKyI-vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  341 SPDGKYI-VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cCCccEE-EecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9999987 6999999999999999999999999999999999975

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=3.2e-13  Score=115.80  Aligned_cols=278  Identities=10%  Similarity=0.111  Sum_probs=178.5

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD  127 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~  127 (407)
                      +++|+.|...++|-..+.-. .+.|....+..-.|...|.|++|.. ....|.+|+.+++|.+.|+.+.+.+..+.... 
T Consensus        71 L~SGGDD~~~~~W~~de~~~-~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~-  147 (609)
T KOG4227|consen   71 LASGGDDMHGRVWNVDELMV-RKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENN-  147 (609)
T ss_pred             EeecCCcceeeeechHHHHh-hcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccC-
Confidence            78899999999993321111 1222222333334778999999988 77899999999999999999876544322111 


Q ss_pred             CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-ceee--EeecccCEEEEEECC
Q 046899          128 SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-ARGK--YLGHEDTVEDVQFCP  204 (407)
Q Consensus       128 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~--~~~~~~~v~~l~~~~  204 (407)
                            ..-.+|.+                 .....+..+++.+.++.+.+||..... ++..  +.........+.|+|
T Consensus       148 ------~~~~VY~m-----------------~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  148 ------NRGDVYHM-----------------DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             ------cccceeec-----------------ccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence                  11112222                 123335567777788888888876544 2222  223445678899999


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCCCCceee--ecccCc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 046899          205 SSAQEFCSVGDDSCLILWDARSGSTPAVKV--EKAHNA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGS  279 (407)
Q Consensus       205 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~  279 (407)
                      ..+.+|++.+..+-+-+||.+....+.++.  +.+...   .-.++.|+| +|+.|++--....-.+||+-..     .-
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~-----R~  278 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQ-----RC  278 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecc-----cc
Confidence            999999999999999999999876543321  112222   236789999 7888877665566678888762     12


Q ss_pred             ceeeecCCC-------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc-----------------------ccccc
Q 046899          280 PIHKFEGHS-------AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-----------------------QDYGE  329 (407)
Q Consensus       280 ~~~~~~~h~-------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~-----------------------~~~~~  329 (407)
                      ++..+. |.       ..+.+++|..+..  ++||+.+=.|.+|.+.....-                       ..+.+
T Consensus       279 ~V~k~D-~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG  355 (609)
T KOG4227|consen  279 FVLKSD-HNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG  355 (609)
T ss_pred             eeEecc-CCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence            333332 32       2577788876655  479999999999988642111                       12234


Q ss_pred             CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          330 LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       330 ~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      |..-+..+.|+                  .|...|++.+....++||.-
T Consensus       356 HRSv~NQVRF~------------------~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  356 HRSVPNQVRFS------------------QHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ccccccceeec------------------CCcceEeccchhhheecccc
Confidence            44444444443                  34777888788889999954

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.53  E-value=3.4e-13  Score=123.00  Aligned_cols=230  Identities=15%  Similarity=0.153  Sum_probs=158.5

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-------------CCcEEEEecc
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-------------DQSVVLWSIQ  142 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------d~~i~~w~~~  142 (407)
                      ...+.+|.+-|++++|+. +|+.+|+|+.|+.|.+|+-.-...++  ..|.+.+.+.             =....+|...
T Consensus        46 lqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~  122 (1081)
T KOG1538|consen   46 LQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE  122 (1081)
T ss_pred             ccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence            334458999999999998 99999999999999999865432211  1122221111             2334455544


Q ss_pred             ccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCC----cEEEEEeCC
Q 046899          143 DHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSA----QEFCSVGDD  216 (407)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~----~~l~s~~~d  216 (407)
                      .....-.....-+...+-.....+++.|-.+|+|.+-+....+.+..-+  +...+|.+++|+|...    ..+++....
T Consensus       123 qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~  202 (1081)
T KOG1538|consen  123 QKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG  202 (1081)
T ss_pred             hhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc
Confidence            3321111111112223334445668889999999887543333322222  4678999999999642    468888888


Q ss_pred             CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEE
Q 046899          217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQW  296 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~  296 (407)
                      .++.++.+.-..   +.......-...|+.+.+ +|.+++.|+.|+.+.+|-..       +-.+.++.....+|+.++.
T Consensus       203 qTLSFy~LsG~~---Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~-------GvrLGTvg~~D~WIWtV~~  271 (1081)
T KOG1538|consen  203 QTLSFYQLSGKQ---IGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRD-------GVRLGTVGEQDSWIWTVQA  271 (1081)
T ss_pred             ceeEEEEeccee---ecccccCCCCchhheecc-CCcEEEEccCCCceEEEeec-------CeEEeeccccceeEEEEEE
Confidence            888888876332   322333445567899999 89999999999999999654       6778888778899999999


Q ss_pred             cCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          297 SPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       297 ~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +|+++++ +.|+.||+|-.|++-.
T Consensus       272 ~PNsQ~v-~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  272 KPNSQYV-VVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ccCCceE-EEEEccCeeehhhhHH
Confidence            9999986 7999999999999754

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=2.1e-12  Score=110.91  Aligned_cols=258  Identities=10%  Similarity=0.084  Sum_probs=172.6

Q ss_pred             EeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           79 TIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      .......|..+.|.-+ ..+.|...+.|-.+..+.+....+...+                |++..-    .  -....+
T Consensus        51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~----------------~~~~~~----~--l~~~~I  108 (412)
T KOG3881|consen   51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL----------------DDAKTV----S--LGTKSI  108 (412)
T ss_pred             ccchhhhhhhheeecCCceeEeeccccCcccccccccCCcccccc----------------cccccc----c--cccccc
Confidence            3345667888887642 3345555546667777777765544332                111110    0  000000


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcC----ceeeEeecccCEEEEEECCCCCcEEEEEeCC--CcEEEEEcCCCCCCc
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIG----ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD--SCLILWDARSGSTPA  231 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~  231 (407)
                      ......+..++++.++|.+.+|..+.+.    +...+. -...+..+.-++..+.++++|+..  ..+.+||+.+.+  .
T Consensus       109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--q  185 (412)
T KOG3881|consen  109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--Q  185 (412)
T ss_pred             cchhhcCCEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccce--e
Confidence            0011122335556677777777665322    222332 235677777788887889999998  889999998874  2


Q ss_pred             eeeeccc---------CcceEEEEecCCC--CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC
Q 046899          232 VKVEKAH---------NADIHCVDWNPHD--VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK  300 (407)
Q Consensus       232 ~~~~~~~---------~~~v~~l~~~~~~--~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~  300 (407)
                      +..-..-         .-.++.+.|-+ +  ...||+++.-+.+++||.+..     ..|+.+|..-+.+|+++...|++
T Consensus       186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q-----RRPV~~fd~~E~~is~~~l~p~g  259 (412)
T KOG3881|consen  186 IWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ-----RRPVAQFDFLENPISSTGLTPSG  259 (412)
T ss_pred             eeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc-----CcceeEeccccCcceeeeecCCC
Confidence            3222111         22456788877 5  789999999999999999964     58999998889999999999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCCcccc-cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          301 SSVFGSSAEDGILNIWDHEKIGEKQD-YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      ..|+ +|..-+.+..+|++.++.+.. +.+..+.++++...|.                  ...+++++.|..|||+|+.
T Consensus       260 n~Iy-~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~------------------~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  260 NFIY-TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT------------------HPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             cEEE-EecccchhheecccCceeeccccCCccCCcceEEEcCC------------------CceEEeeccceeEEEeecc
Confidence            9775 898999999999999887765 6665665544433332                  5689999999999999998


Q ss_pred             ccccCChHHHHHH
Q 046899          380 DLIYRPEEEVLAE  392 (407)
Q Consensus       380 ~~~~~~~~~~~~~  392 (407)
                            +..++..
T Consensus       321 ------trkll~k  327 (412)
T KOG3881|consen  321 ------TRKLLHK  327 (412)
T ss_pred             ------cchhhhh
Confidence                  5555544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.51  E-value=2.9e-12  Score=105.81  Aligned_cols=116  Identities=24%  Similarity=0.452  Sum_probs=88.4

Q ss_pred             ccCEEEEEECCCCCcEEEE--EeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---CcEEEEe
Q 046899          194 EDTVEDVQFCPSSAQEFCS--VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---NSIHMFD  268 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd  268 (407)
                      .++|.+++|+|++ +.|++  |..++.|.+||++ .+  .+..+  ....++.+.|+| +|++|++|+.+   |.|.+||
T Consensus        59 ~~~I~~~~WsP~g-~~favi~g~~~~~v~lyd~~-~~--~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   59 EGPIHDVAWSPNG-NEFAVIYGSMPAKVTLYDVK-GK--KIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCceEEEEECcCC-CEEEEEEccCCcccEEEcCc-cc--EeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEE
Confidence            4579999999999 55544  3457899999997 33  34444  356788999999 89999998754   6799999


Q ss_pred             CCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC-----CCeEEEEeCCCCCccc
Q 046899          269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGILNIWDHEKIGEKQ  325 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~-----d~~i~vwd~~~~~~~~  325 (407)
                      +++      .+.+.+.. |. .++.++|+|+|++++.+.+.     |+.++||++. ++.+.
T Consensus       132 ~~~------~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  132 VRK------KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             CCC------CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence            998      77877775 33 47899999999988644443     8999999986 34443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.51  E-value=2.2e-14  Score=125.32  Aligned_cols=250  Identities=12%  Similarity=0.074  Sum_probs=174.3

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      ...+.-...|.++.|.. +.+++|.+-. .-+.|||-..-+ +..+..+..          +              ....
T Consensus       164 ~~Ei~v~Etv~Dv~~LH-neq~~AVAQK-~y~yvYD~~GtE-lHClk~~~~----------v--------------~rLe  216 (545)
T KOG1272|consen  164 HFEINVMETVRDVTFLH-NEQFFAVAQK-KYVYVYDNNGTE-LHCLKRHIR----------V--------------ARLE  216 (545)
T ss_pred             eeeeehhhhhhhhhhhc-chHHHHhhhh-ceEEEecCCCcE-EeehhhcCc----------h--------------hhhc
Confidence            33344556788888886 7778877765 578888866432 111111110          0              0011


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                      |.+..   -.+++++..|.++..|+.+|+.+..+....+.+..++-+|-. ..+-+|...|+|.+|......  .+..+.
T Consensus       217 FLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~ske--PLvKiL  290 (545)
T KOG1272|consen  217 FLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKE--PLVKIL  290 (545)
T ss_pred             ccchh---heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcc--hHHHHH
Confidence            12222   236778888999999999999999988888899999999988 789999999999999998777  566677


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      .|.++|.+|++++ +|++++|.+.|..++|||+|+      ...+.++.. ..+...+++|..|  +| ..+....|.+|
T Consensus       291 cH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~------~~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw  359 (545)
T KOG1272|consen  291 CHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRN------FYQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIW  359 (545)
T ss_pred             hcCCCcceEEECC-CCcEEeecccccceeEeeecc------ccccceeec-CCCcccccccccc--ce-eeecCCeeeee
Confidence            9999999999999 999999999999999999999      666666654 4567889999877  45 44556679999


Q ss_pred             e-CCCC--Cccccccc--CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          317 D-HEKI--GEKQDYGE--LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       317 d-~~~~--~~~~~~~~--~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                      - .-.+  ....-+..  ..++|.++.|.|- .|     +-.|....|-.+.|+.|+.+...=-|
T Consensus       360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~-ED-----vLGIGH~~G~tsilVPGsGePN~Ds~  418 (545)
T KOG1272|consen  360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPY-ED-----VLGIGHAGGITSILVPGSGEPNYDSL  418 (545)
T ss_pred             hhhhcCCCCCCcchhhhccCcccccceeccH-HH-----eeeccccCCceeEeccCCCCCCcchh
Confidence            4 2221  12222222  3458888988762 11     22334444556677888777644333

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.50  E-value=4.8e-12  Score=123.01  Aligned_cols=250  Identities=12%  Similarity=0.084  Sum_probs=156.8

Q ss_pred             ecccccCccceEEEEeecccCcccCCcceeeEEEe-eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC
Q 046899           46 PQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTI-IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG  124 (407)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~  124 (407)
                      +.+++++.||++|+|.......+.  ......... ...+.+.++...+ +++.+|.|+.||.|++.+++.... .....
T Consensus      1062 s~FvsgS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~v~~~~id~~~~-~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGSVRVLRIDHYNV-SKRVA 1137 (1431)
T ss_pred             ceEEEecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCeEEEEEcccccc-cccee
Confidence            568999999999999555222111  222222222 3678899999888 889999999999999999986311 11111


Q ss_pred             cCCCCCCC--CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEE
Q 046899          125 AADSHPDL--DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDV  200 (407)
Q Consensus       125 ~~~~~~~~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l  200 (407)
                      .....++.  +|.  +-++..              .........++.+...+.+..||........+++  ...+.|+++
T Consensus      1138 ~~~ri~n~~~~g~--vv~m~a--------------~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGV--VVSMHA--------------FTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             eeeecccccCCCc--eEEeec--------------ccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            11111111  111  111110              0011111256777888889999988776655544  245789999


Q ss_pred             EECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC--CEEEEEe--CCCcEEEEeCCCCCCCC
Q 046899          201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV--NLILTGS--ADNSIHMFDRRKLTSDG  276 (407)
Q Consensus       201 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~~l~tg~--~dg~i~vwd~~~~~~~~  276 (407)
                      +.+|.+ +.++.|+..|.+.+||+|=+... ..-...+..+++.+..+|..+  ...++++  ..+.|.+|++.+     
T Consensus      1202 ~idp~~-~WlviGts~G~l~lWDLRF~~~i-~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~----- 1274 (1431)
T KOG1240|consen 1202 VIDPWC-NWLVIGTSRGQLVLWDLRFRVPI-LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET----- 1274 (1431)
T ss_pred             EecCCc-eEEEEecCCceEEEEEeecCcee-ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-----
Confidence            999998 89999999999999999966532 222234557888888887444  4444444  467899999988     


Q ss_pred             CCCceeeecCC-------------------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          277 VGSPIHKFEGH-------------------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       277 ~~~~~~~~~~h-------------------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                       +.....+...                   .-......+...+. ++.+|+.|..||.||.......
T Consensus      1275 -g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1275 -GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             -CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcccc
Confidence             4444433321                   11111222222333 4569999999999998875444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.49  E-value=4.5e-12  Score=108.11  Aligned_cols=136  Identities=16%  Similarity=0.263  Sum_probs=109.6

Q ss_pred             CCCCCCCCcCceeeEee---cccCEEEEEECCCCCcEEEEEe--CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899          176 DKPLESPSIGARGKYLG---HEDTVEDVQFCPSSAQEFCSVG--DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH  250 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~  250 (407)
                      |.|+|+..++.+.++..   +...+.++++++.+ .+++--+  ..|.|.+||+.+-+  ....+..|.+.+-+++|++ 
T Consensus       108 IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~--~v~~I~aH~~~lAalafs~-  183 (391)
T KOG2110|consen  108 IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQ--PVNTINAHKGPLAALAFSP-  183 (391)
T ss_pred             EEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccce--eeeEEEecCCceeEEEECC-
Confidence            66777777777766643   44556777777766 5666432  36899999999888  6778889999999999999 


Q ss_pred             CCCEEEEEeCCCc-EEEEeCCCCCCCCCCCceeeecCC--CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899          251 DVNLILTGSADNS-IHMFDRRKLTSDGVGSPIHKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG  322 (407)
Q Consensus       251 ~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~  322 (407)
                      +|.+|||++..|+ ||||.+..      ++.+.+|+..  -..|.+++|+|++++| ++.|..++|++|.++...
T Consensus       184 ~G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~~~~IySL~Fs~ds~~L-~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  184 DGTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTYPVSIYSLSFSPDSQFL-AASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CCCEEEEeccCceEEEEEEcCC------ccEeeeeeCCceeeEEEEEEECCCCCeE-EEecCCCeEEEEEecccc
Confidence            9999999999985 79999988      9999999753  3468999999999966 677778999999998643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=7.8e-12  Score=117.05  Aligned_cols=178  Identities=12%  Similarity=0.066  Sum_probs=109.0

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTS  274 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~  274 (407)
                      .+.+.+|+|+|..++++.+.+|...+|.+..... ....+..+........|+| +++.|+..+. +|...+|.+.... 
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~-  317 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-GLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASG-  317 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCC-CcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCC-
Confidence            3457899999954555677888877776543221 1334444555566788999 8887775554 5667777654311 


Q ss_pred             CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccccee
Q 046899          275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLT  352 (407)
Q Consensus       275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  352 (407)
                         +. ...+..+.......+|+|+|++|+.++..++  .|.+||+.+++... +... .....+.|+||          
T Consensus       318 ---g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spd----------  381 (427)
T PRK02889        318 ---GA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPN----------  381 (427)
T ss_pred             ---Cc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCC----------
Confidence               22 2222222334456889999998754433332  69999998765433 3222 23457788888          


Q ss_pred             eeeEeeCccceeeeEEEee---eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          353 SIGMHLIHGRLLVCLTMVK---VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       353 ~~~~~~~~~~~i~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                              +..|+..+.++   .+.+-++.       +.....+..+.+.+...+|||
T Consensus       382 --------g~~l~~~~~~~g~~~l~~~~~~-------g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        382 --------GRYILYATQQGGRSVLAAVSSD-------GRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             --------CCEEEEEEecCCCEEEEEEECC-------CCceEEeecCCCCCCCCccCC
Confidence                    66666655544   34444443       455555666777888888886

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.49  E-value=1.4e-12  Score=107.91  Aligned_cols=140  Identities=15%  Similarity=0.178  Sum_probs=112.5

Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG  276 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~  276 (407)
                      ..++.|++.+ ..++++-.+|.+.+-+.........+..+.|.-+++...|+..+++++++|+.|+.+..||+|.+    
T Consensus       124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p----  198 (339)
T KOG0280|consen  124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP----  198 (339)
T ss_pred             eeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC----
Confidence            4578898888 66888888999997666555532345788999999999999888999999999999999999964    


Q ss_pred             CCCceee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          277 VGSPIHK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       277 ~~~~~~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                       .+.+.. .+.|...|.+|.-+|..++.++||+.|..|++||.++..+...-....+.|+.+..+|-
T Consensus       199 -~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  199 -KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE  264 (339)
T ss_pred             -cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence             344444 56699999999999887777789999999999999987766655555677777777665

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.49  E-value=1.6e-11  Score=102.92  Aligned_cols=178  Identities=12%  Similarity=0.158  Sum_probs=132.5

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--ccCcceEEEEecCCC
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--AHNADIHCVDWNPHD  251 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~  251 (407)
                      ..+.|||-...+++.++. -..+|.++.+.++.   +++. ..++|.+|...+.-+ ....+.  ..+..+.+++-.. +
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~-~  147 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTS-N  147 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCC-C
Confidence            456788877777777774 67899999998854   4444 368999999874321 233332  2233444444333 3


Q ss_pred             CCEEEE-EeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe-EEEEeCCCCCccccccc
Q 046899          252 VNLILT-GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI-LNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       252 ~~~l~t-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~  329 (407)
                      ..+||. |-.-|.|+|-|+....    ..+...+.+|...|.|++.+.+|. ++||+|..|+ |||||..+++.++.+..
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~----~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTK----PNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcC----cCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            344443 4456899999998733    224578899999999999999999 5699999988 89999999999988764


Q ss_pred             --CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899          330 --LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL  381 (407)
Q Consensus       330 --~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~  381 (407)
                        ....|++++||||                  ..++++.|.-|+|+|+.+.+.
T Consensus       223 G~d~A~iy~iaFSp~------------------~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  223 GVDRADIYCIAFSPN------------------SSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCchheEEEEEeCCC------------------ccEEEEEcCCCeEEEEEeecC
Confidence              3556999999999                  889999999999999999753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=1.2e-11  Score=105.29  Aligned_cols=208  Identities=15%  Similarity=0.262  Sum_probs=138.7

Q ss_pred             EEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC
Q 046899           41 SCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP  117 (407)
Q Consensus        41 s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  117 (407)
                      -+.|.+.   ++.+..|..+|+|     +...+.|.+.   ...-+..|.||+|-|-.+..|+.|+. +-|.+|......
T Consensus       103 ~~aWhqH~~~fava~nddvVriy-----~ksst~pt~L---ks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl  173 (445)
T KOG2139|consen  103 GVAWHQHIIAFAVATNDDVVRIY-----DKSSTCPTKL---KSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL  173 (445)
T ss_pred             eEeechhhhhhhhhccCcEEEEe-----ccCCCCCcee---cchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence            3577775   6678888899999     2222222221   11346789999999988888999887 468999876432


Q ss_pred             CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCE
Q 046899          118 NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTV  197 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v  197 (407)
                      ........                                             .+         .....+....+| .+|
T Consensus       174 n~~r~~~~---------------------------------------------~s---------~~~~qvl~~pgh-~pV  198 (445)
T KOG2139|consen  174 NANRNIRM---------------------------------------------MS---------THHLQVLQDPGH-NPV  198 (445)
T ss_pred             cccccccc---------------------------------------------cc---------ccchhheeCCCC-cee
Confidence            11110000                                             00         000112233355 689


Q ss_pred             EEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 046899          198 EDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG  276 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~  276 (407)
                      ++++|+++| ..+++++. |..|.|||..++....+.  ..-.+.+.-+.|+| |+.+|+++.-|+..++|+....    
T Consensus       199 tsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~----  270 (445)
T KOG2139|consen  199 TSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS----  270 (445)
T ss_pred             eEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcC-CCCEEEEecccceeeeehhccc----
Confidence            999999999 66777664 778999999998843222  33456788899999 9999999999999999965542    


Q ss_pred             CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                       .....-.- ..+.|....|+|.|++||.+++..  =++|.+.-.++.
T Consensus       271 -wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~  314 (445)
T KOG2139|consen  271 -WTKERWIL-GSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGED  314 (445)
T ss_pred             -ceecceec-cCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCC
Confidence             33332222 355899999999999998777644  455665543333

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.3e-11  Score=114.38  Aligned_cols=221  Identities=14%  Similarity=0.122  Sum_probs=138.2

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeC---CCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTD---SPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      ....|.+.+...+|+| +++.|+..+.   +..|.+||+.++...                                   
T Consensus       196 ~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-----------------------------------  239 (435)
T PRK05137        196 YLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-----------------------------------  239 (435)
T ss_pred             EEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-----------------------------------
Confidence            3446888999999999 7777777653   356777777654211                                   


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCc--EEEEEcCCCCCCce
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC--LILWDARSGSTPAV  232 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~  232 (407)
                                                        .+..+.+.+...+|+|+|..++++.+.++.  |.+||+.++.   .
T Consensus       240 ----------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~  282 (435)
T PRK05137        240 ----------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---T  282 (435)
T ss_pred             ----------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---e
Confidence                                              112233455678999999555566666665  6677887765   3


Q ss_pred             eeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          233 KVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                      ..+..+........|+| +++.|+..+. +|  .|+++|+..       .....+..+...+....|+|+|++|+.+...
T Consensus       283 ~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g-------~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~  354 (435)
T PRK05137        283 TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG-------SNPRRISFGGGRYSTPVWSPRGDLIAFTKQG  354 (435)
T ss_pred             EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC-------CCeEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence            44555666667899999 8888776653 33  577778765       3334444445567778999999987544432


Q ss_pred             C--CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe------eeEEEeecccc
Q 046899          310 D--GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV------KVLEIWRMIDL  381 (407)
Q Consensus       310 d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d------~~i~iwd~~~~  381 (407)
                      .  ..|.+||+..... ..+.. ...+..+.||||                  +..|+..+.+      ..|.+.|+.  
T Consensus       355 ~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spD------------------G~~i~~~~~~~~~~~~~~L~~~dl~--  412 (435)
T PRK05137        355 GGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPN------------------GRVIMFFRQTPGSGGAPKLYTVDLT--  412 (435)
T ss_pred             CCceEEEEEECCCCce-EeccC-CCCCCCCeECCC------------------CCEEEEEEccCCCCCcceEEEEECC--
Confidence            2  3688899865432 22322 224567888888                  6666544332      256677765  


Q ss_pred             ccCChHHHHHHHhhcccceeEeeccC
Q 046899          382 IYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       382 ~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                          .+ ....+. ..+.+...+||+
T Consensus       413 ----g~-~~~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        413 ----GR-NEREVP-TPGDASDPAWSP  432 (435)
T ss_pred             ----CC-ceEEcc-CCCCccCcccCC
Confidence                22 223333 233466667764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.3e-11  Score=116.41  Aligned_cols=255  Identities=15%  Similarity=0.172  Sum_probs=169.1

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      .|.-.+++.+++| +++++|+|..||.|.+|.--..+....           ..++.-|.           .+.+.....
T Consensus       203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~-----------t~t~lHWH-----------~~~V~~L~f  259 (792)
T KOG1963|consen  203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSE-----------TCTLLHWH-----------HDEVNSLSF  259 (792)
T ss_pred             hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccc-----------cceEEEec-----------ccccceeEE
Confidence            4777899999999 999999999999999997543211000           11222232           222333333


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC-ceee-----
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP-AVKV-----  234 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~-----  234 (407)
                      ......+.+|+.++.+.+|.+.+++ .+-+.--..+|..+.++|++ .+.+....|+.|.+-...+.... .+..     
T Consensus       260 S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~  337 (792)
T KOG1963|consen  260 SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT  337 (792)
T ss_pred             ecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence            3344568999999999999999888 44455567899999999999 78888888999999877543300 0100     


Q ss_pred             ---ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC------------CCC----------------------
Q 046899          235 ---EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS------------DGV----------------------  277 (407)
Q Consensus       235 ---~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~------------~~~----------------------  277 (407)
                         .....+-.+.++++| ..+.++-.+..|.|.+||+.+...            ++.                      
T Consensus       338 ~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~  416 (792)
T KOG1963|consen  338 PSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL  416 (792)
T ss_pred             ccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence               111234467788888 777788888889999998755331            000                      


Q ss_pred             ---------------------------CCceee-ecCCCCCEEEEEEcCCCCC-EEEEeeCCCeEEEEeCCCCCccccc-
Q 046899          278 ---------------------------GSPIHK-FEGHSAAVLCVQWSPDKSS-VFGSSAEDGILNIWDHEKIGEKQDY-  327 (407)
Q Consensus       278 ---------------------------~~~~~~-~~~h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~-  327 (407)
                                                 ..+... ...|...+...++.+..+. .++|++.||.+++|-+...+..... 
T Consensus       417 E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~  496 (792)
T KOG1963|consen  417 EARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS  496 (792)
T ss_pred             eeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc
Confidence                                       000001 1135555555555443322 4579999999999998543333221 


Q ss_pred             ---------ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          328 ---------GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       328 ---------~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                               ..|..+++.++||.|                  | .+++.+.+++|.|||..+
T Consensus       497 s~W~c~~i~sy~k~~i~a~~fs~d------------------G-slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  497 SNWTCKAIGSYHKTPITALCFSQD------------------G-SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             cceEEeeeeccccCcccchhhcCC------------------C-cEEEEecCCEEEEecCCC
Confidence                     136778889999887                  4 677888999999999974

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.5e-12  Score=122.09  Aligned_cols=173  Identities=16%  Similarity=0.188  Sum_probs=117.4

Q ss_pred             CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---CcEEEEEcCCCCCCceeeecccCcceEEEEecC
Q 046899          173 GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNP  249 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~  249 (407)
                      +..+.+||..... .+.+..|...+...+|+|+| +.|+.++.+   ..|.+||+.++....+....++   ...++|+|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC
Confidence            4678888876554 45566778889999999999 667666543   4699999988763223333333   34689999


Q ss_pred             CCCCEEEEEe-CCCcEEEE--eCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899          250 HDVNLILTGS-ADNSIHMF--DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD  326 (407)
Q Consensus       250 ~~~~~l~tg~-~dg~i~vw--d~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  326 (407)
                       +++.|+.+. .+|.+.||  |+..       ..+..+..+...+....|+|+|++|+.++..++...||++........
T Consensus       258 -DG~~La~~~~~~g~~~Iy~~d~~~-------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~  329 (429)
T PRK01742        258 -DGSRLAFASSKDGVLNIYVMGANG-------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS  329 (429)
T ss_pred             -CCCEEEEEEecCCcEEEEEEECCC-------CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence             888777654 68876665  5544       345566667777889999999998766666788888998754322212


Q ss_pred             cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      ...+..  ..+.||||                  +..|+..+.+ .+.+||+.
T Consensus       330 ~l~~~~--~~~~~SpD------------------G~~ia~~~~~-~i~~~Dl~  361 (429)
T PRK01742        330 LVGGRG--YSAQISAD------------------GKTLVMINGD-NVVKQDLT  361 (429)
T ss_pred             EecCCC--CCccCCCC------------------CCEEEEEcCC-CEEEEECC
Confidence            212222  45778888                  6777666555 45568886

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=4e-12  Score=107.42  Aligned_cols=277  Identities=14%  Similarity=0.177  Sum_probs=162.7

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC-----cccccCcCCCCCC-------------------------
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN-----RHAVLGAADSHPD-------------------------  131 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~-------------------------  131 (407)
                      ..+-|.++.|.- .|++||||..+|.|.++.-.....     ...++.|...---                         
T Consensus        24 eadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   24 EADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hhcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            456788999887 999999999999999997554321     1122222211000                         


Q ss_pred             ---CCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC------cCceeeEe-ecccCEEEEE
Q 046899          132 ---LDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS------IGARGKYL-GHEDTVEDVQ  201 (407)
Q Consensus       132 ---~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~------~~~~~~~~-~~~~~v~~l~  201 (407)
                         .|.++++|.+...........    ....+.       .+.-..+++--...      ..+.+.+. +|.--|++|.
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~----~~~~~~-------~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS  171 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYN----LPEEGP-------PGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS  171 (433)
T ss_pred             EecCCcceeeeeeecccccccccc----ccccCC-------CCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence               088999998876533221110    000000       00001111100000      11222222 5888999999


Q ss_pred             ECCCCCcEEEEEeCCCcEEEEEcCCCCCCc-eeeecc-----cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC-
Q 046899          202 FCPSSAQEFCSVGDDSCLILWDARSGSTPA-VKVEKA-----HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS-  274 (407)
Q Consensus       202 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~-----~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-  274 (407)
                      ++.++ ..++++ .|-.|.+|++.-..... +.-...     ...-|++..|+|...++|+-.+..|+|++-|+|...- 
T Consensus       172 ~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC  249 (433)
T KOG1354|consen  172 VNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC  249 (433)
T ss_pred             ecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence            99998 556554 68999999987544211 112222     2356889999998888999999999999999994210 


Q ss_pred             CC---------CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-CCcccccccCCCcccCCCCcCcch
Q 046899          275 DG---------VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK-IGEKQDYGELKYPIIHPAYSSDML  344 (407)
Q Consensus       275 ~~---------~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~  344 (407)
                      +.         .+....-|.+--..|.++.|+++|+|++ +-. =-+|++||+.. .+.+.++..|..--..++-   + 
T Consensus       250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~---l-  323 (433)
T KOG1354|consen  250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCS---L-  323 (433)
T ss_pred             cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehHhHHHHHHH---H-
Confidence            00         0001111122235799999999999876 432 37999999954 4455666555432111110   0 


Q ss_pred             hccccceee--eeEeeCccceeeeEEEeeeEEEeecc
Q 046899          345 DIETKLLTS--IGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       345 ~~~~~~~~~--~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                       .....+..  -..+.|.+..+.+|+...-+++++..
T Consensus       324 -YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  324 -YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             -hhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence             00111212  24666777899999999999999964

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.42  E-value=1.1e-11  Score=102.77  Aligned_cols=130  Identities=22%  Similarity=0.285  Sum_probs=102.6

Q ss_pred             ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      .++.+++|+.++...+|+...++++.+|+.|+.+..||+|.+..-.....+-|...|.+|.-+|..+.+++||++|..|+
T Consensus       157 ~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~  236 (339)
T KOG0280|consen  157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIR  236 (339)
T ss_pred             ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccccee
Confidence            44577889999999999999889999999999999999995542223336678999999999987899999999999999


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      +||.|++     ++|+..-.. .+.|+.+.++|.-...+..++.-+-.+|-+.+..
T Consensus       237 ~~DtRnm-----~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  237 VLDTRNM-----GKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             eeehhcc-----cCccccCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            9999976     567765543 4789999999965433334444455777777653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.40  E-value=1.4e-10  Score=97.27  Aligned_cols=165  Identities=12%  Similarity=0.218  Sum_probs=113.1

Q ss_pred             eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC-CcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899           75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP-NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG  153 (407)
Q Consensus        75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~  153 (407)
                      .+...+.-..+|.+|.+.+ +  .|+..- .+.|.||.+.... .+..+.....+    .| +....             
T Consensus        86 ~~i~el~f~~~I~~V~l~r-~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP----kG-lC~~~-------------  143 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRR-D--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP----KG-LCSLC-------------  143 (346)
T ss_pred             cEEEEEEeccceeeEEEcC-C--eEEEEe-cCeEEEEEcCCChhheeeeecccCC----Cc-eEeec-------------
Confidence            3555556788999999765 3  455554 4699999998542 22222221111    11 11111             


Q ss_pred             CCcccccCCCCCcccc-ccCCCCCCCCCCCCcCc--eeeEeecccCEEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCC
Q 046899          154 SAKSTASGGANSKNAS-KSGGNGDKPLESPSIGA--RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC-LILWDARSGST  229 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~-~~~~~~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~  229 (407)
                            .......++. |..-|.++|.|+...+.  .....+|...|.|++.+.+| .++||+|..|+ |||||..++. 
T Consensus       144 ------~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~-  215 (346)
T KOG2111|consen  144 ------PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGT-  215 (346)
T ss_pred             ------CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCc-
Confidence                  0000111111 44557777777655444  46778999999999999999 89999999998 7999999998 


Q ss_pred             Cceeeec--ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          230 PAVKVEK--AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       230 ~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                       .+..+.  .....|.+|+|+| +..+||++++.|++.||.++.
T Consensus       216 -~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  216 -LLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             -EeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence             444443  3356899999999 999999999999999999876

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=1.8e-11  Score=103.53  Aligned_cols=262  Identities=12%  Similarity=0.188  Sum_probs=167.7

Q ss_pred             EEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC----CC
Q 046899           43 RWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ----PN  118 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~----~~  118 (407)
                      .-.|.+.+.+.|.++|+|...  +.....|.+...    -..+++++.+.+ +...|+.|-..|++.-+.+...    ..
T Consensus        34 ~~e~gv~~~s~drtvrv~lkr--ds~q~wpsI~~~----mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~  106 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKR--DSGQYWPSIYHY----MPSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTF  106 (404)
T ss_pred             cCCCCeEEccccceeeeEEec--cccccCchhhhh----CCCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcch
Confidence            334567788999999999654  223333333222    357899999988 7788999999999999876543    23


Q ss_pred             cccccCcCCCCCCCCCcEEEEeccccc-------cccccC--C-C---CCc-ccc----cCCCCCccccccCCCCCCCC-
Q 046899          119 RHAVLGAADSHPDLDQSVVLWSIQDHV-------SALAAE--P-G---SAK-STA----SGGANSKNASKSGGNGDKPL-  179 (407)
Q Consensus       119 ~~~~~~~~~~~~~~d~~i~~w~~~~~~-------~~~~~~--~-~---~~~-~~~----~~~~~~~~~~~~~~~~i~i~-  179 (407)
                      .+....|...+.     ..++++...-       ..+..+  . +   +.. +..    ...+......|...+.+... 
T Consensus       107 ~r~~~~h~~~v~-----~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr  181 (404)
T KOG1409|consen  107 LKDYLAHQARVS-----AIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLK  181 (404)
T ss_pred             hhhhhhhhccee-----eEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEE
Confidence            333334443321     1222222110       000000  0 0   000 000    00000122234455555443 


Q ss_pred             -CCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899          180 -ESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       180 -d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                       .......+.++.+|.+.+.+++|.|.. .+|.+|..|..+.+||+--..- ......+|...|..+..-+ -.+.+.++
T Consensus       182 ~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~-~t~~l~S~  258 (404)
T KOG1409|consen  182 LEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQ-HTRQLISC  258 (404)
T ss_pred             EeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhh-hheeeeec
Confidence             335566788889999999999999987 7999999999999999975542 4567789999999998887 67889999


Q ss_pred             eCCCcEEEEeCCCCCCCCC-------------------------------------------------------------
Q 046899          259 SADNSIHMFDRRKLTSDGV-------------------------------------------------------------  277 (407)
Q Consensus       259 ~~dg~i~vwd~~~~~~~~~-------------------------------------------------------------  277 (407)
                      +.||.|.+||++....+..                                                             
T Consensus       259 ~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~  338 (404)
T KOG1409|consen  259 GEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFS  338 (404)
T ss_pred             cCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeE
Confidence            9999999999764331000                                                             


Q ss_pred             ---------------CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          278 ---------------GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       278 ---------------~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                                     ..++..+..-...|+.+.+...-. +|+|+|.|..|+|||++.
T Consensus       339 vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlg-lLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  339 VRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLG-LLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             EEEecccchhhhcCCCCccccccccccceeEEEhhhhcc-ceeecCCceEEEEEechh
Confidence                           122333333344688888887766 457999999999999986

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=5e-12  Score=107.55  Aligned_cols=184  Identities=16%  Similarity=0.250  Sum_probs=129.3

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      +..+..++|++.- ..|+++..|-.|++||-.... + ..........|+|++|-|..+..|+.|+..| |.+|......
T Consensus        98 ~~dlr~~aWhqH~-~~fava~nddvVriy~ksst~-p-t~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSSTC-P-TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhh-hhhhhhccCcEEEEeccCCCC-C-ceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence            3467789999965 679999999999999987733 2 2222345678999999998888888888655 8899865422


Q ss_pred             CCCC--------CCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcch
Q 046899          274 SDGV--------GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDML  344 (407)
Q Consensus       274 ~~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~  344 (407)
                      ....        ...+..-.+| .+|++++|.+||..+ ++++ .|..|+|||+.++....-..-.-+.++-+.||||  
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l-~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd--  249 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTIL-VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD--  249 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEE-eecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC--
Confidence            1100        1122233445 689999999999966 4665 5788999999997766555455566777889999  


Q ss_pred             hccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          345 DIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                                      ++++.+.+.|+..++|+...     ...+..-.- -.+.|....||+
T Consensus       250 ----------------gd~lfaAt~davfrlw~e~q-----~wt~erw~l-gsgrvqtacWsp  290 (445)
T KOG2139|consen  250 ----------------GDVLFAATCDAVFRLWQENQ-----SWTKERWIL-GSGRVQTACWSP  290 (445)
T ss_pred             ----------------CCEEEEecccceeeeehhcc-----cceecceec-cCCceeeeeecC
Confidence                            89999999999999996652     222222222 233666666654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.38  E-value=1.4e-10  Score=109.02  Aligned_cols=173  Identities=17%  Similarity=0.189  Sum_probs=108.8

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDR  269 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~  269 (407)
                      ..+.+++|+|++..++++.+.++  .|.+||+.++.   ...+..+........|+| +++.|+..+. ++  .|.++|+
T Consensus       234 ~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       234 GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             CCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEEC
Confidence            34556889999954555555554  58888988765   333344544555778999 8887766554 33  5777777


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC---eEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG---ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI  346 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~  346 (407)
                      ..      ++ ...+..+...+..+.|+|+|++++ .++.++   .|.+||+.+.. .+.+... .....+.|+||    
T Consensus       310 ~~------~~-~~~l~~~~~~~~~~~~spdg~~i~-~~~~~~~~~~i~~~d~~~~~-~~~l~~~-~~~~~p~~spd----  375 (417)
T TIGR02800       310 DG------GE-VRRLTFRGGYNASPSWSPDGDLIA-FVHREGGGFNIAVMDLDGGG-ERVLTDT-GLDESPSFAPN----  375 (417)
T ss_pred             CC------CC-EEEeecCCCCccCeEECCCCCEEE-EEEccCCceEEEEEeCCCCC-eEEccCC-CCCCCceECCC----
Confidence            65      33 344444556678899999999775 555554   78999988743 3333322 22345678887    


Q ss_pred             cccceeeeeEeeCccceeeeEEEee---eEEEeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                                    +..|+..+.++   .+.+.+..       +.....+..+.+.+...+||
T Consensus       376 --------------g~~l~~~~~~~~~~~l~~~~~~-------g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       376 --------------GRMILYATTRGGRGVLGLVSTD-------GRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             --------------CCEEEEEEeCCCcEEEEEEECC-------CceeeECCCCCCCcCCCCCC
Confidence                          66666666554   45555543       44445555556667777775

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=8.5e-12  Score=119.54  Aligned_cols=184  Identities=20%  Similarity=0.171  Sum_probs=139.9

Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeeccc----CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGHED----TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                      +..++.+..+..+.+||...............    ...-+.++++. -++++|+--+.|.+|+......+ . .+.+|.
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p-~-~l~GHe  175 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKP-I-RLKGHE  175 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCc-c-eecccC
Confidence            34566677788888888777666555543221    11123345555 78999999999999999855433 2 567999


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~  318 (407)
                      +.+.++.++. +++++++.++|.++|+|++.+      .+... +.-+|.+.|..+.|+|+  ++ +|++.|.+.++|+.
T Consensus       176 G~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s------~~~~~~~~fgHsaRvw~~~~~~n--~i-~t~gedctcrvW~~  245 (967)
T KOG0974|consen  176 GSIFSIVTSL-DGRYIASVSDDRSIRLWPIDS------REVLGCTGFGHSARVWACCFLPN--RI-ITVGEDCTCRVWGV  245 (967)
T ss_pred             CceEEEEEcc-CCcEEEEEecCcceeeeeccc------ccccCcccccccceeEEEEeccc--ee-EEeccceEEEEEec
Confidence            9999999999 999999999999999999998      44443 66679999999999999  35 69999999999976


Q ss_pred             CCCCcccccccCCC-cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          319 EKIGEKQDYGELKY-PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       319 ~~~~~~~~~~~~~~-~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .- ..+..+.+|.. .++.++..++                  ...++++..||++++|++.
T Consensus       246 ~~-~~l~~y~~h~g~~iw~~~~~~~------------------~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  246 NG-TQLEVYDEHSGKGIWKIAVPIG------------------VIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             cc-ceehhhhhhhhcceeEEEEcCC------------------ceEEEeeccCcchhhhhhh
Confidence            54 55667777654 3555555444                  5678899999999999985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.37  E-value=5.9e-11  Score=107.77  Aligned_cols=185  Identities=9%  Similarity=0.114  Sum_probs=120.7

Q ss_pred             cccCCCCCCCCCCCC-cC--ceeeEeecccCEEEEEECCCCCcEEE-EEeCCCcEEEEEcCC-CCCCceeeecccCcceE
Q 046899          169 SKSGGNGDKPLESPS-IG--ARGKYLGHEDTVEDVQFCPSSAQEFC-SVGDDSCLILWDARS-GSTPAVKVEKAHNADIH  243 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~-~~--~~~~~~~~~~~v~~l~~~~~~~~~l~-s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~  243 (407)
                      +...++.|.+|++.+ ++  .+..+. +.+....++++|++ ++|+ ++..++.|.+|++.. +........ .......
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~   83 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT   83 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence            345667788887753 22  334443 34567789999999 5554 445689999999973 331111111 2334567


Q ss_pred             EEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899          244 CVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG  322 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~  322 (407)
                      .++++| +++++++++. ++.|.+|++.....  ..+.+..+. +.....+++++|++++++++...++.|.+||+.+.+
T Consensus        84 ~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         84 HISTDH-QGRFLFSASYNANCVSVSPLDKDGI--PVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             EEEECC-CCCEEEEEEcCCCeEEEEEECCCCC--CCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            899999 8887777664 88999999974210  012333333 234567889999999998888888999999998744


Q ss_pred             cccc-------cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE-eeeEEEeecc
Q 046899          323 EKQD-------YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMI  379 (407)
Q Consensus       323 ~~~~-------~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~  379 (407)
                      .+..       ... .....++.|+||                  +.++++... +++|.+|++.
T Consensus       160 ~l~~~~~~~~~~~~-g~~p~~~~~~pd------------------g~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        160 HLVAQEPAEVTTVE-GAGPRHMVFHPN------------------QQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             cccccCCCceecCC-CCCCceEEECCC------------------CCEEEEEecCCCEEEEEEEe
Confidence            3321       111 222345667666                  777766655 7899999996

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=1.4e-11  Score=118.05  Aligned_cols=193  Identities=18%  Similarity=0.201  Sum_probs=142.1

Q ss_pred             CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899           95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN  174 (407)
Q Consensus        95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (407)
                      +...++.+..+..+.+||........++.+.....   --...+|-                   .+...-.+++++.-+
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~---l~~~~~~g-------------------~s~~~~~i~~gsv~~  155 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT---LYSSLIIG-------------------DSAEELYIASGSVFG  155 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEE---EEeEEEEe-------------------ccCcEEEEEeccccc
Confidence            44566677777788888877665554443321110   00111111                   111122356677888


Q ss_pred             CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCE
Q 046899          175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNL  254 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~  254 (407)
                      .+.+|+...-+.-..+.+|.+.|..+.|+.+| .++++.|+|.++++|++.+.+... -...+|+..|..+++.| .  .
T Consensus       156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~-n--~  230 (967)
T KOG0974|consen  156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLP-N--R  230 (967)
T ss_pred             cEEEEeccccCCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC-cccccccceeEEEEecc-c--e
Confidence            88888876433333578999999999999999 899999999999999999988432 35569999999999998 4  9


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899          255 ILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG  322 (407)
Q Consensus       255 l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~  322 (407)
                      ++|++.|.+.++|+..       ++.+..+.+|. ..+..++..++.. +.+|++.|+.+++||+....
T Consensus       231 i~t~gedctcrvW~~~-------~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  231 IITVGEDCTCRVWGVN-------GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             eEEeccceEEEEEecc-------cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccc
Confidence            9999999999999766       46677888875 4699999988777 55799999999999987643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.34  E-value=1.2e-11  Score=114.45  Aligned_cols=271  Identities=17%  Similarity=0.234  Sum_probs=177.2

Q ss_pred             ceEEEeeeecccCCCeeEEEEeeccc-----ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeE
Q 046899           24 PVLYDWLANHNLVWPSLSCRWGPQLE-----QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKI   98 (407)
Q Consensus        24 ~~~y~~l~~~~~~~p~~s~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~   98 (407)
                      |+-....++|-.+|..-..||.|.-+     ...+....-+|     +..........+.+.+|...|+.+.|.|+....
T Consensus        55 p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiw-----nlA~ss~~aIef~lhghsraitd~n~~~q~pdV  129 (1081)
T KOG0309|consen   55 PFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIW-----NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDV  129 (1081)
T ss_pred             CCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhh-----hhhcCCccceEEEEecCccceeccccCCCCCcc
Confidence            44444557788899999999988532     11112222244     333334445567778999999999999999999


Q ss_pred             EEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCC
Q 046899           99 VATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKP  178 (407)
Q Consensus        99 l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i  178 (407)
                      |||++.|-.|..||+.+..                ..+..|+.                                     
T Consensus       130 latcsvdt~vh~wd~rSp~----------------~p~ys~~~-------------------------------------  156 (1081)
T KOG0309|consen  130 LATCSVDTYVHAWDMRSPH----------------RPFYSTSS-------------------------------------  156 (1081)
T ss_pred             eeeccccccceeeeccCCC----------------cceeeeec-------------------------------------
Confidence            9999999999999998652                12222221                                     


Q ss_pred             CCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899          179 LESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       179 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                                    -......++|+-..++.+|+ +..+-|.+||++.+..| ...+++|...|+.++|+......+.+.
T Consensus       157 --------------w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p-l~s~K~~vs~vn~~~fnr~~~s~~~s~  220 (1081)
T KOG0309|consen  157 --------------WRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP-LCSLKGHVSSVNSIDFNRFKYSEIMSS  220 (1081)
T ss_pred             --------------ccccCceeeecccCcchhhh-ccCCceEEEeccCCCcc-eEEecccceeeehHHHhhhhhhhhccc
Confidence                          12234568888877666655 56788999999999875 556678999999999988777789999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEE-EeeCCCeEEEEeCCC----------CCccccc
Q 046899          259 SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG-SSAEDGILNIWDHEK----------IGEKQDY  327 (407)
Q Consensus       259 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~-s~~~d~~i~vwd~~~----------~~~~~~~  327 (407)
                      +.||+|++||.....    .+.-++.. ...+|..-++.|-|...+. ---.+..+.+.+-++          .+.+.+|
T Consensus       221 ~~d~tvkfw~y~kSt----~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F  295 (1081)
T KOG0309|consen  221 SNDGTVKFWDYSKST----TESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF  295 (1081)
T ss_pred             CCCCceeeecccccc----cccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence            999999999988743    22333332 4567888888886543211 111133444444332          2445667


Q ss_pred             ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899          328 GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL  381 (407)
Q Consensus       328 ~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~  381 (407)
                      .+|+..|...-|     -.+..-   .+-.....-.+++||-|.++|+|-+.+.
T Consensus       296 ~GH~D~V~eFlW-----R~r~e~---~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  296 VGHDDVVLEFLW-----RKRKEC---DGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             cCcchHHHHHhh-----hhcccc---cCCCCccceeEEEeecCCceEeeeccHH
Confidence            777766544322     111110   0222222447999999999999998643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=5.6e-10  Score=105.18  Aligned_cols=173  Identities=14%  Similarity=0.079  Sum_probs=104.6

Q ss_pred             EEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRRK  271 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~~  271 (407)
                      +....|+|+|..++++.+.+|  .|.++|+.++.   ...+..+........|+| +++.++..+. +|  .|.++|+..
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~  320 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNG  320 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence            345789999944444555555  58888998776   333444555566789999 7776665543 44  466677765


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccc
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETK  349 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~  349 (407)
                            ++. ..+...........|+|+|++|+.+...++  .|.++|+.+++. ..+.. ......+.||||       
T Consensus       321 ------g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spd-------  384 (430)
T PRK00178        321 ------GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPN-------  384 (430)
T ss_pred             ------CCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCC-------
Confidence                  432 222222233446789999998765554444  588899987543 22222 122235678887       


Q ss_pred             ceeeeeEeeCccceeeeEEEe-e--eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          350 LLTSIGMHLIHGRLLVCLTMV-K--VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       350 ~~~~~~~~~~~~~~i~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                                 +..|+..+.+ +  .|.+.++.       +.....+..+.+.+...+||+
T Consensus       385 -----------g~~i~~~~~~~g~~~l~~~~~~-------g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        385 -----------GTMLIYATRQQGRGVLMLVSIN-------GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             -----------CCEEEEEEecCCceEEEEEECC-------CCceEECcCCCCCcCCCccCC
Confidence                       6666654443 2  56666764       333344555566677778875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=3e-10  Score=106.79  Aligned_cols=171  Identities=16%  Similarity=0.124  Sum_probs=104.9

Q ss_pred             EEEECCCCCcEEEEEeCCCc--EEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCCCCC
Q 046899          199 DVQFCPSSAQEFCSVGDDSC--LILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRRKLT  273 (407)
Q Consensus       199 ~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~~~~  273 (407)
                      ..+|+|+|..++++.+.+|.  |.++|+.+++   ...+..+.......+|+| +++.|+..+. ++  .|.++|+..  
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~--  339 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLAS--  339 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC--
Confidence            57899999555556666775  7777887665   334444555667789999 7777765543 44  456667665  


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccce
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLL  351 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~  351 (407)
                          ++. ..+..........+|+|+|++|+.+...++  .|.++|+.+++. ..+... .......|+||         
T Consensus       340 ----g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spd---------  403 (448)
T PRK04792        340 ----GKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTST-RLDESPSVAPN---------  403 (448)
T ss_pred             ----CCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCC-CCCCCceECCC---------
Confidence                333 333222223445789999998866655555  455577776543 222221 12234578887         


Q ss_pred             eeeeEeeCccceeeeEEEe-e--eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          352 TSIGMHLIHGRLLVCLTMV-K--VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       352 ~~~~~~~~~~~~i~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                               +..|+..+.+ +  .|.+++..       +.....+..+.+.+...+|||
T Consensus       404 ---------G~~I~~~~~~~g~~~l~~~~~~-------G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        404 ---------GTMVIYSTTYQGKQVLAAVSID-------GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ---------CCEEEEEEecCCceEEEEEECC-------CCceEECcCCCCCcCCCccCC
Confidence                     5655544433 3  46677764       555666666777788888886

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=4.4e-11  Score=105.64  Aligned_cols=243  Identities=17%  Similarity=0.259  Sum_probs=163.9

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD  127 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~  127 (407)
                      +++.+.|+.+|+-.   ..  ...-......+..|.++|+.++.-|....-|.|++.|+.+.-.|+........+.....
T Consensus       202 i~~~s~dgqvr~s~---i~--~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~  276 (559)
T KOG1334|consen  202 IVTSSRDGQVRVSE---IL--ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA  276 (559)
T ss_pred             ceeccccCceeeee---ec--cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence            55666666665541   11  11112224455579999999999998899999999999999999987654443332111


Q ss_pred             CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCce------eeEee------ccc
Q 046899          128 SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR------GKYLG------HED  195 (407)
Q Consensus       128 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~------~~~~~------~~~  195 (407)
                      ..   ...|.++++.-.                -.....+++++.+...+++|.......      ..+..      ..-
T Consensus       277 ~~---~~~v~L~~Ia~~----------------P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v  337 (559)
T KOG1334|consen  277 DE---KERVGLYTIAVD----------------PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV  337 (559)
T ss_pred             CC---ccceeeeeEecC----------------CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence            00   112445443311                111235677888888999887543322      22221      234


Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC----------Ccee-eecccCc--ceEEEEe-cCCCCCEEEEEeCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST----------PAVK-VEKAHNA--DIHCVDW-NPHDVNLILTGSAD  261 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~-~~~~~~~--~v~~l~~-~~~~~~~l~tg~~d  261 (407)
                      .|+|++|+.++..+|+ +-.|-.|.+|.-..+.-          +... .+++|..  .|.++-| .| ...++++|+.=
T Consensus       338 ~ITgl~Ysh~~sElLa-SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDC  415 (559)
T KOG1334|consen  338 NITGLVYSHDGSELLA-SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDC  415 (559)
T ss_pred             cceeEEecCCccceee-eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCcc
Confidence            7899999977745554 45678899995433221          1122 2567743  4666665 67 78999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          262 NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       262 g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      |.|.||+-.+      ++.+.-+.+-..-|+||.=||.-+ +|||++-|..|+||-....+.
T Consensus       416 GhIFiW~K~t------~eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  416 GHIFIWDKKT------GEIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             ceEEEEecch------hHHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecCCcccc
Confidence            9999999998      899999988777999999999999 679999999999998754433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=5e-11  Score=111.67  Aligned_cols=175  Identities=17%  Similarity=0.202  Sum_probs=112.3

Q ss_pred             CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899          175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      .+.++|.. +.....+..+...+.+.+|+|+| +.|+..+.   ...|.+||+.+++.   ..+....+.+.+..|+| +
T Consensus       177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~---~~l~~~~g~~~~~~~SP-D  250 (427)
T PRK02889        177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRR---RVVANFKGSNSAPAWSP-D  250 (427)
T ss_pred             EEEEECCC-CCCceEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCE---EEeecCCCCccceEECC-C
Confidence            45556653 33334455677889999999999 66666553   24599999988772   22333445567899999 7


Q ss_pred             CCEEE-EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC--CCCcccccc
Q 046899          252 VNLIL-TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE--KIGEKQDYG  328 (407)
Q Consensus       252 ~~~l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~--~~~~~~~~~  328 (407)
                      ++.|+ +.+.+|...+|.+...     ......+..+...+....|+|||++|+.++..++...+|.+.  .+. ...+.
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt  324 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNAD-----GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVT  324 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECC-----CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEe
Confidence            87765 5677887677665431     233555655666667889999999876555445666677553  332 22222


Q ss_pred             cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecc
Q 046899          329 ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMI  379 (407)
Q Consensus       329 ~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~  379 (407)
                      ........+.||||                  +..|+..+.++   .|.+||+.
T Consensus       325 ~~g~~~~~~~~SpD------------------G~~Ia~~s~~~g~~~I~v~d~~  360 (427)
T PRK02889        325 FTGSYNTSPRISPD------------------GKLLAYISRVGGAFKLYVQDLA  360 (427)
T ss_pred             cCCCCcCceEECCC------------------CCEEEEEEccCCcEEEEEEECC
Confidence            12222345678887                  77777655543   79999987

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=4.8e-11  Score=120.18  Aligned_cols=199  Identities=15%  Similarity=0.301  Sum_probs=145.3

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      |-..|.++.-+| ...+.+||+.||.|++|....+..+                 ..|+.....+        +.-..+.
T Consensus      2207 ~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v-----------------~~~rt~g~s~--------vtr~~f~ 2260 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQV-----------------VCFRTAGNSR--------VTRSRFN 2260 (2439)
T ss_pred             ccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeE-----------------EEeeccCcch--------hhhhhhc
Confidence            446788888778 4557789999999999998876433                 3333322210        0111122


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe---CCCcEEEEEcCCCCCCceeeeccc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG---DDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                      .....+..+..||.+.+|.+. .++....+.|......+.|-.   ..+++++   .++.+.+||........... ..|
T Consensus      2261 ~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H 2335 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCH 2335 (2439)
T ss_pred             ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eec
Confidence            222345667778888888876 566777788999899999876   3466654   47889999986544222333 789


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~  318 (407)
                      .+.++++++-| ...+|++|+.+|.|++||++.      .+.+++++.         ++ ... .|++|+..|.|+||++
T Consensus      2336 ~~gaT~l~~~P-~~qllisggr~G~v~l~D~rq------rql~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2336 DGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQ------RQLRHTFQA---------LD-TRE-YFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             CCCceEEEEcC-cceEEEecCCcCcEEEeehHH------HHHHHHhhh---------hh-hhh-eeeccCcccceEEEEc
Confidence            99999999999 889999999999999999998      777777765         44 333 4679999999999999


Q ss_pred             CCCCccccccc
Q 046899          319 EKIGEKQDYGE  329 (407)
Q Consensus       319 ~~~~~~~~~~~  329 (407)
                      .....+.+++.
T Consensus      2398 s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2398 SEFGLLHTFPS 2408 (2439)
T ss_pred             cccchhhcCch
Confidence            99888877764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.27  E-value=1.1e-10  Score=105.78  Aligned_cols=166  Identities=11%  Similarity=0.123  Sum_probs=131.9

Q ss_pred             ccccccCCCCCCCCCCCCcCceeeEeec---ccCEEEEEEC------C-------------CCCcEEEEEeCCCcEEEEE
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKYLGH---EDTVEDVQFC------P-------------SSAQEFCSVGDDSCLILWD  223 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~v~~l~~~------~-------------~~~~~l~s~~~dg~i~iwd  223 (407)
                      +++....+|.+++|+...++..+.+...   ++...+.+|.      |             .+...++-|...|.|.+|+
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys   86 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS   86 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence            3566677788888887777766665431   2333444442      2             1225788899999999999


Q ss_pred             cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCE
Q 046899          224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV  303 (407)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  303 (407)
                      +..++-.....-..|.+.|+++.++. +-..|.+++.|+.+..|+...      ...++.+++....+.+++.+|||.. 
T Consensus        87 ~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~------~~~~~~~~~~~~~~~sl~is~D~~~-  158 (541)
T KOG4547|consen   87 VAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE------KVIIRIWKEQKPLVSSLCISPDGKI-  158 (541)
T ss_pred             ecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccc------ceeeeeeccCCCccceEEEcCCCCE-
Confidence            99988322233357999999999988 788999999999999999998      8899999998999999999999984 


Q ss_pred             EEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899          304 FGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSS  341 (407)
Q Consensus       304 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~  341 (407)
                      +++++  ++|++||+++.+.+..|.+|.++|..++|-.
T Consensus       159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~  194 (541)
T KOG4547|consen  159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT  194 (541)
T ss_pred             EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence            45775  7999999999999999999999999999843

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.27  E-value=4.6e-10  Score=102.13  Aligned_cols=275  Identities=10%  Similarity=0.091  Sum_probs=158.6

Q ss_pred             ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceE-EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCC
Q 046899           50 QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVN-RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADS  128 (407)
Q Consensus        50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~  128 (407)
                      +...++.+.++         +....+....+...+.+. .+.|+| +++++.+++.||.|.++|+.+.+.+.++......
T Consensus        11 ~~~~~~~v~vi---------D~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~   80 (369)
T PF02239_consen   11 VERGSGSVAVI---------DGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP   80 (369)
T ss_dssp             EEGGGTEEEEE---------ETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE
T ss_pred             EecCCCEEEEE---------ECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc
Confidence            34455667776         223344555555545554 456677 8888989999999999999998866655432211


Q ss_pred             CCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec-------ccCEEEEE
Q 046899          129 HPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH-------EDTVEDVQ  201 (407)
Q Consensus       129 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------~~~v~~l~  201 (407)
                                              .++.+.++|+.  .+++....+.+.++|..+.+.++.+...       ...+..|.
T Consensus        81 ------------------------~~i~~s~DG~~--~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv  134 (369)
T PF02239_consen   81 ------------------------RGIAVSPDGKY--VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV  134 (369)
T ss_dssp             ------------------------EEEEE--TTTE--EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE
T ss_pred             ------------------------ceEEEcCCCCE--EEEEecCCCceeEeccccccceeecccccccccccCCCceeEE
Confidence                                    11111222221  1233446778888999999888877542       34678888


Q ss_pred             ECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCCCC------
Q 046899          202 FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKLTS------  274 (407)
Q Consensus       202 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~------  274 (407)
                      .+|.++.++++--+.+.|.+-|...... ................|+| ++++++++ ..+..|-++|.++...      
T Consensus       135 ~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~  212 (369)
T PF02239_consen  135 ASPGRPEFVVNLKDTGEIWVVDYSDPKN-LKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDT  212 (369)
T ss_dssp             E-SSSSEEEEEETTTTEEEEEETTTSSC-EEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred             ecCCCCEEEEEEccCCeEEEEEeccccc-cceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeec
Confidence            8888844444555558888889877653 2333334455677889999 88877654 4566777887655320      


Q ss_pred             -------------------------------------------CCCCCceeeecCCCCCEEEEEEcCCCCCEEEE---ee
Q 046899          275 -------------------------------------------DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS---SA  308 (407)
Q Consensus       275 -------------------------------------------~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s---~~  308 (407)
                                                                 ...++.+.++.....+ ..++-||+++++.+.   +.
T Consensus       213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~  291 (369)
T PF02239_consen  213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP  291 (369)
T ss_dssp             SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S
T ss_pred             cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCC
Confidence                                                       0013445555554445 777889999999866   46


Q ss_pred             CCCeEEEEeCCCCCccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          309 EDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       309 ~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      ..++|.++|.++.+....+.. ....+.++.|++|                |..-++..+..++.|.|||-.
T Consensus       292 ~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d----------------G~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  292 DADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPD----------------GKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             SHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TT----------------SSEEEEEEE--TTEEEEEETT
T ss_pred             CCceEEEEECcCcceeEEEeccCCCcEeccEECCC----------------CCEEEEEEecCCCEEEEEECC
Confidence            678999999999877766653 3335778888888                223355566666689999987

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=2e-10  Score=108.15  Aligned_cols=173  Identities=16%  Similarity=0.157  Sum_probs=116.7

Q ss_pred             CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899          175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      .+.++|.... ..+.+..+...+.+.+|+|+| +.|+..+.   +..|.+||+.+++   ...+..+.+.+.+.+|+| +
T Consensus       183 ~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~---~~~l~~~~g~~~~~~~SP-D  256 (435)
T PRK05137        183 RLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQ---RELVGNFPGMTFAPRFSP-D  256 (435)
T ss_pred             EEEEECCCCC-CcEEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCc---EEEeecCCCcccCcEECC-C
Confidence            5666776443 445566788899999999999 56665543   4689999998876   233445566778899999 7


Q ss_pred             CCEEE-EEeCCCc--EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccc
Q 046899          252 VNLIL-TGSADNS--IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQD  326 (407)
Q Consensus       252 ~~~l~-tg~~dg~--i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~  326 (407)
                      ++.|+ +.+.++.  |.+||+..      + .+..+..+........|+|||++|+.+...++  .|.++|+...+ .+.
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~------~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~  328 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRS------G-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRR  328 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCC------C-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEE
Confidence            77664 5565665  77778876      3 34556666666778999999998754443333  68888877643 333


Q ss_pred             cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe---eeEEEeecc
Q 046899          327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV---KVLEIWRMI  379 (407)
Q Consensus       327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~i~iwd~~  379 (407)
                      +......+..+.||||                  +..|+..+.+   ..|.+||+.
T Consensus       329 lt~~~~~~~~~~~Spd------------------G~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        329 ISFGGGRYSTPVWSPR------------------GDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             eecCCCcccCeEECCC------------------CCEEEEEEcCCCceEEEEEECC
Confidence            3333444556778888                  6666654433   367788874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2e-10  Score=107.93  Aligned_cols=174  Identities=14%  Similarity=0.157  Sum_probs=114.5

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH  250 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~  250 (407)
                      ..+.+||..... .+.+..+...+.+.+|+|++ +.|+.++.   +..|.+||+.+++.   ..+....+...+..|+| 
T Consensus       184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~---~~l~~~~g~~~~~~~Sp-  257 (433)
T PRK04922        184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQR---ELVASFRGINGAPSFSP-  257 (433)
T ss_pred             EEEEEECCCCCC-ceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCE---EEeccCCCCccCceECC-
Confidence            357778875443 44555677789999999999 66666653   34699999987762   22333444556789999 


Q ss_pred             CCCEEE-EEeCCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe--EEEEeCCCCCccc
Q 046899          251 DVNLIL-TGSADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI--LNIWDHEKIGEKQ  325 (407)
Q Consensus       251 ~~~~l~-tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~  325 (407)
                      +++.++ +.+.+|  .|++||+.+      ++ +..+..+.......+|+|+|++|+.++..++.  |.++|+..++. +
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~------g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~  329 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGS------RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-E  329 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCC------CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-E
Confidence            777664 555555  599999986      43 45565565566788999999987655444554  66667766443 2


Q ss_pred             ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecc
Q 046899          326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMI  379 (407)
Q Consensus       326 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~  379 (407)
                      .+.........++||||                  +..|+..+.++   .|.+||+.
T Consensus       330 ~lt~~g~~~~~~~~SpD------------------G~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        330 RLTFQGNYNARASVSPD------------------GKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             EeecCCCCccCEEECCC------------------CCEEEEEECCCCceeEEEEECC
Confidence            22222233446788888                  66666544332   79999986

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=3.8e-11  Score=120.87  Aligned_cols=207  Identities=14%  Similarity=0.184  Sum_probs=159.8

Q ss_pred             CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEE
Q 046899          133 DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFC  211 (407)
Q Consensus       133 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~  211 (407)
                      ++...-|..+.....+......+..+.........++|+.||.+++|....++.+..++. ....|+.+.|+-+| +.+.
T Consensus      2189 ~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~ 2267 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFG 2267 (2439)
T ss_pred             CccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-Ccee
Confidence            455555555555555555555556666666777889999999999999888888777652 34789999999999 7899


Q ss_pred             EEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe---CCCcEEEEeCCCCCCCCCCCceeeecCCC
Q 046899          212 SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS---ADNSIHMFDRRKLTSDGVGSPIHKFEGHS  288 (407)
Q Consensus       212 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~---~dg~i~vwd~~~~~~~~~~~~~~~~~~h~  288 (407)
                      .+-.||.+.+|.+. .+  .....+.|......+.|-.   ..+++++   .++.+.+||...+..   ...+.  ..|.
T Consensus      2268 i~d~dg~l~l~q~~-pk--~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~---~s~v~--~~H~ 2336 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQAS-PK--PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM---NSLVH--TCHD 2336 (2439)
T ss_pred             eeccCCceeecccC-Cc--ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc---cceee--eecC
Confidence            99999999999987 33  5777788988888888853   5566654   467999999876431   22333  7899


Q ss_pred             CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE
Q 046899          289 AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT  368 (407)
Q Consensus       289 ~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~  368 (407)
                      +.++++++.|... +|.|||.+|.|++||++..+.+..+..-+                            -..++++|+
T Consensus      2337 ~gaT~l~~~P~~q-llisggr~G~v~l~D~rqrql~h~~~~~~----------------------------~~~~f~~~s 2387 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQRQLRHTFQALD----------------------------TREYFVTGS 2387 (2439)
T ss_pred             CCceEEEEcCcce-EEEecCCcCcEEEeehHHHHHHHHhhhhh----------------------------hhheeeccC
Confidence            9999999999988 55699999999999999987777765411                            166788999


Q ss_pred             EeeeEEEeeccc
Q 046899          369 MVKVLEIWRMID  380 (407)
Q Consensus       369 ~d~~i~iwd~~~  380 (407)
                      .-|.|+||+++.
T Consensus      2388 s~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSE 2399 (2439)
T ss_pred             cccceEEEEccc
Confidence            999999999984

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=4.2e-11  Score=110.82  Aligned_cols=284  Identities=18%  Similarity=0.248  Sum_probs=174.0

Q ss_pred             eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899           74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG  153 (407)
Q Consensus        74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~  153 (407)
                      +-..-.+.-.+.++++..+| .|+-+|+++.-| +.+-|+...-.......|...          |.+..  .....++.
T Consensus        15 f~kslsl~v~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp----------w~vad--~qws~h~a   80 (1081)
T KOG0309|consen   15 FGKSLSLKVDGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP----------WQVAD--VQWSPHPA   80 (1081)
T ss_pred             cCceeEEEecCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCc----------chhcc--eecccCCC
Confidence            33334445678899999999 777788887754 556666543222222111111          11000  00000000


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCCCCC---cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          154 SAKSTASGGANSKNASKSGGNGDKPLESPS---IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                                ..+-+...+...-.+|++..   ......+.+|...|+.+.|+|+.+..+++++-|-.++.||+++...+
T Consensus        81 ----------~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p  150 (1081)
T KOG0309|consen   81 ----------KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP  150 (1081)
T ss_pred             ----------CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc
Confidence                      01112223333444555432   22334566899999999999999999999999999999999998876


Q ss_pred             ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                      ..... .-......+.|+-.+++.+|+ +....|.+||.+..     ..++..+++|...|+.++|...-...+.+++.|
T Consensus       151 ~ys~~-~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~g-----s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d  223 (1081)
T KOG0309|consen  151 FYSTS-SWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKG-----STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND  223 (1081)
T ss_pred             eeeee-cccccCceeeecccCcchhhh-ccCCceEEEeccCC-----CcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence            44444 334456789999866666655 55678999999984     578999999999999999986544345699999


Q ss_pred             CeEEEEeCCCCCcc-cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccccc----CC
Q 046899          311 GILNIWDHEKIGEK-QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY----RP  385 (407)
Q Consensus       311 ~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~----~~  385 (407)
                      ++|+.||..+.... ........|++...|-|-                |.+..+..-..+..+.+++....-.    ..
T Consensus       224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf----------------g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~  287 (1081)
T KOG0309|consen  224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF----------------GEGYCIMPMVGGNMVPQLRCENSDLEWNVFD  287 (1081)
T ss_pred             CceeeecccccccccceeccccCcceecccccc----------------CceeEeccccCCeeeeeccccchhhhhcccc
Confidence            99999999865433 223334566666555442                2222222222222444443321100    11


Q ss_pred             hHHHHHHHhhcccceeEee
Q 046899          386 EEEVLAELDKFKSHIFGCD  404 (407)
Q Consensus       386 ~~~~~~~~~~h~~~v~~~~  404 (407)
                      ..+++..+.||.+.|...-
T Consensus       288 ~~~pVh~F~GH~D~V~eFl  306 (1081)
T KOG0309|consen  288 LNTPVHTFVGHDDVVLEFL  306 (1081)
T ss_pred             CCcceeeecCcchHHHHHh
Confidence            3467888999988876543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.21  E-value=4.6e-09  Score=86.32  Aligned_cols=211  Identities=11%  Similarity=0.049  Sum_probs=131.6

Q ss_pred             EEEEEeC----CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899           87 NRIRELP----QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG  162 (407)
Q Consensus        87 ~~l~~~~----~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  162 (407)
                      ..|.|.|    ....+||.|+.-|...+|...+.+....+                -|......++...        ...
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~----------------cd~snn~v~~~~r--------~cd  126 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ----------------CDVSNNDVTLVKR--------YCD  126 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceee----------------ecccccchhhhhh--------hcc
Confidence            4455555    13458999999999999999876432211                1111100000000        000


Q ss_pred             CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-eecccCcc
Q 046899          163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-VEKAHNAD  241 (407)
Q Consensus       163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~  241 (407)
                      ....+..++.|.++++.++..+..........-.++++++++++ .++++.+....|-.|.+......... ........
T Consensus       127 ~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~  205 (344)
T KOG4532|consen  127 LKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH  205 (344)
T ss_pred             cccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence            01123334455555555443332222221111237899999998 89999999999999999765532333 22233444


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee----eecCCCCCEEEEEEcCCCCC-EEEEeeCCCeEEEE
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH----KFEGHSAAVLCVQWSPDKSS-VFGSSAEDGILNIW  316 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~----~~~~h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vw  316 (407)
                      -.+..|+. ....+|++..||++.|||+|.+.     .+..    +-..|.+.++.+.|++.|.. ||.-.-.-+.+.+-
T Consensus       206 gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~-----tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~  279 (344)
T KOG4532|consen  206 GFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMA-----TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV  279 (344)
T ss_pred             ceeeeecc-CcceEEEEecCCcEEEEEecccc-----cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence            56889988 77899999999999999999853     3333    23358999999999986642 23344556889999


Q ss_pred             eCCCCCcccccc
Q 046899          317 DHEKIGEKQDYG  328 (407)
Q Consensus       317 d~~~~~~~~~~~  328 (407)
                      |++++...+.+.
T Consensus       280 D~R~~~~~q~I~  291 (344)
T KOG4532|consen  280 DTRNYVNHQVIV  291 (344)
T ss_pred             EcccCceeeEEe
Confidence            999987766543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=8.1e-09  Score=96.76  Aligned_cols=132  Identities=16%  Similarity=0.184  Sum_probs=85.5

Q ss_pred             CEEEEEECCCCCcEEEEEeC-CCcEEEE--EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---CcEEEEeC
Q 046899          196 TVEDVQFCPSSAQEFCSVGD-DSCLILW--DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---NSIHMFDR  269 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~  269 (407)
                      .+....|+|+| +.|+.++. ++...+|  |+.++.   ...+...........|+| +++.++..+.+   ..|.+||+
T Consensus       288 ~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl  362 (429)
T PRK03629        288 NNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDL  362 (429)
T ss_pred             CcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEEC
Confidence            45678999999 55555544 4555555  665554   223333444556789999 88888765543   35888998


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe---EEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI---LNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~---i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      .+      ++ ...+... .......|+|||++|+ .++.++.   +.++++. ++..+.+..+.+.+..++|||-
T Consensus       363 ~~------g~-~~~Lt~~-~~~~~p~~SpDG~~i~-~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        363 AT------GG-VQVLTDT-FLDETPSIAPNGTMVI-YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CC------CC-eEEeCCC-CCCCCceECCCCCEEE-EEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence            76      43 3334321 2345678999999875 5555543   6777774 4556677777788888999873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.17  E-value=2.1e-10  Score=96.63  Aligned_cols=264  Identities=14%  Similarity=0.204  Sum_probs=152.0

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCC------CCCC---------CCcEEEEecccccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADS------HPDL---------DQSVVLWSIQDHVS  146 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~---------d~~i~~w~~~~~~~  146 (407)
                      .-+.|.-+.|..+...+|.....|+.|.+|++...+-...+......      .|+.         +-.|.+|.+.+...
T Consensus        47 cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   47 CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence            34677888888856666667788999999999877655444433222      2222         77889999988755


Q ss_pred             ccccCCC----CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899          147 ALAAEPG----SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW  222 (407)
Q Consensus       147 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  222 (407)
                      ....++.    +..+.++|.+...+.-..-...+.|.....-..+..+.-.+-..+.|.|+|+| +.++         +|
T Consensus       127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vw  196 (447)
T KOG4497|consen  127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VW  196 (447)
T ss_pred             EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-cEEE---------Ee
Confidence            4333332    33455555543222222111222222222223344444455667889999988 5554         45


Q ss_pred             EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC----------------------------
Q 046899          223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS----------------------------  274 (407)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~----------------------------  274 (407)
                      |---.-  .+. ...-+-.+..++|+| .+++++.|+.|+.+|+.+--+.+.                            
T Consensus       197 d~~Ley--kv~-aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql  272 (447)
T KOG4497|consen  197 DNVLEY--KVY-AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQL  272 (447)
T ss_pred             cchhhh--eee-eeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhh
Confidence            532111  011 112235678899999 889999999999988865211110                            


Q ss_pred             -------------CCC-------------------CCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCC
Q 046899          275 -------------DGV-------------------GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEK  320 (407)
Q Consensus       275 -------------~~~-------------------~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~  320 (407)
                                   .+.                   .++...+....-.+--++|++|..++ ||-.+  -+.+-+||+++
T Consensus       273 ~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~-aTrnd~~PnalW~Wdlq~  351 (447)
T KOG4497|consen  273 LHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYA-ATRNDKYPNALWLWDLQN  351 (447)
T ss_pred             cccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEE-eeecCCCCceEEEEechh
Confidence                         000                   01111111223467889999999865 56542  26789999998


Q ss_pred             CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          321 IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       321 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .+. ...-....||....|.|.                  ...++.....+.+++|-..
T Consensus       352 l~l-~avLiQk~piraf~WdP~------------------~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  352 LKL-HAVLIQKHPIRAFEWDPG------------------RPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             hhh-hhhhhhccceeEEEeCCC------------------CceEEEEcCCceEEEEcCC
Confidence            544 444445667766666664                  3444444444567777664

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=3.8e-10  Score=95.69  Aligned_cols=269  Identities=15%  Similarity=0.197  Sum_probs=156.9

Q ss_pred             eecccccCccceEEEEeecccCc---------ccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEEEeCc
Q 046899           45 GPQLEQATYKNRQRLYLSEQFNE---------EARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~  114 (407)
                      +..+++|+-+|++.++--++...         ....|.+.-.+.+.-...|+.++|.++ +...++..+.|.+|++|.+.
T Consensus        37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~  116 (433)
T KOG1354|consen   37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR  116 (433)
T ss_pred             cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence            34689999999887773221100         000122222233345578999999974 44567777889999999987


Q ss_pred             CCCCcccc-cCcCCCCCCCCCcEEEEeccccccccccCC---------CCCcccccCCCCCccccccCCCCCCCCCCCCc
Q 046899          115 AQPNRHAV-LGAADSHPDLDQSVVLWSIQDHVSALAAEP---------GSAKSTASGGANSKNASKSGGNGDKPLESPSI  184 (407)
Q Consensus       115 ~~~~~~~~-~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~  184 (407)
                      .......- .......+..-.++++--+......+...+         ..+..+..... ......+.|=.|.+|++..-
T Consensus       117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD-~Et~lSADdLRINLWnlei~  195 (433)
T KOG1354|consen  117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD-KETFLSADDLRINLWNLEII  195 (433)
T ss_pred             ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-cceEeeccceeeeecccccc
Confidence            65433210 000000000011222221111111111111         11111111111 22333556667888887543


Q ss_pred             Cce---eeEee-----cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC----Ccee----------eecccCcce
Q 046899          185 GAR---GKYLG-----HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST----PAVK----------VEKAHNADI  242 (407)
Q Consensus       185 ~~~---~~~~~-----~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~----------~~~~~~~~v  242 (407)
                      ..-   ...+.     -+.-|++..|+|...+.|+-.+..|+|++-|+|....    ....          .+.+--..|
T Consensus       196 d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI  275 (433)
T KOG1354|consen  196 DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI  275 (433)
T ss_pred             CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence            221   11222     2457889999999888999999999999999995421    0011          111223467


Q ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC------------C---EEEEEEcCCCCCEEEEe
Q 046899          243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA------------A---VLCVQWSPDKSSVFGSS  307 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~------------~---v~~v~~~~~~~~ll~s~  307 (407)
                      ..+.|++ +|+++++-+. -+|++||+...     .+++.+++-|..            .   -..++|+.++.++ +||
T Consensus       276 SDvKFs~-sGryilsRDy-ltvk~wD~nme-----~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v-~TG  347 (433)
T KOG1354|consen  276 SDVKFSH-SGRYILSRDY-LTVKLWDLNME-----AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV-MTG  347 (433)
T ss_pred             hceEEcc-CCcEEEEecc-ceeEEEecccc-----CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE-ecc
Confidence            8899999 9999998653 58999999653     577877776632            2   3456889888877 499


Q ss_pred             eCCCeEEEEeCCCCC
Q 046899          308 AEDGILNIWDHEKIG  322 (407)
Q Consensus       308 ~~d~~i~vwd~~~~~  322 (407)
                      +..+.++++++..+.
T Consensus       348 sy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  348 SYNNVFRVFNLARGS  362 (433)
T ss_pred             cccceEEEecCCCCc
Confidence            999999999976543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2.4e-08  Score=90.11  Aligned_cols=306  Identities=16%  Similarity=0.219  Sum_probs=171.9

Q ss_pred             cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC-------
Q 046899           35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD-------  104 (407)
Q Consensus        35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~-------  104 (407)
                      ..|...-++|.|.   +.|-.--| +.+|         ..+.....+...|.+ |.-+.|+| +.++|+|=+.       
T Consensus       209 enWTetyv~wSP~GTYL~t~Hk~G-I~lW---------GG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~  276 (698)
T KOG2314|consen  209 ENWTETYVRWSPKGTYLVTFHKQG-IALW---------GGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEE  276 (698)
T ss_pred             hcceeeeEEecCCceEEEEEeccc-eeee---------cCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCc
Confidence            4566667888874   44544444 6688         333344555566875 88999999 8899998764       


Q ss_pred             ----CCcEEEEeCcCCCCcccccCcCCCCCCC----------------CCcEEEEeccccccccc---cCCCCCcccccC
Q 046899          105 ----SPDVLIWDVEAQPNRHAVLGAADSHPDL----------------DQSVVLWSIQDHVSALA---AEPGSAKSTASG  161 (407)
Q Consensus       105 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~----------------d~~i~~w~~~~~~~~~~---~~~~~~~~~~~~  161 (407)
                          ...++|||+.++.....+.........-                ..+|.+++...-. .+.   ....++.-....
T Consensus       277 ~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~-lld~Kslki~gIr~Fsws  355 (698)
T KOG2314|consen  277 DDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFM-LLDKKSLKISGIRDFSWS  355 (698)
T ss_pred             ccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCcee-eecccccCCccccCcccC
Confidence                2569999999998777665522111100                3344555433210 000   000111100011


Q ss_pred             CCCCcccccc-----CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE----------eCCCcEEEEEcCC
Q 046899          162 GANSKNASKS-----GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV----------GDDSCLILWDARS  226 (407)
Q Consensus       162 ~~~~~~~~~~-----~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~----------~~dg~i~iwd~~~  226 (407)
                      +....++.-.     .-..+.+..+++++.+++-.-+.-.=..+.|-.+| .+|+.-          +.-..+.|+.++.
T Consensus       356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrire  434 (698)
T KOG2314|consen  356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIRE  434 (698)
T ss_pred             CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeec
Confidence            1111122111     11123344555555555443333222345566666 555542          2223477888887


Q ss_pred             CCCCceeeecccCcceEEEEecCCCCCEEEEEe-C--CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCE
Q 046899          227 GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-A--DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV  303 (407)
Q Consensus       227 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~--dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  303 (407)
                      ..-|  .........|...+|.| .|+.+++-+ .  ..++.+|-+++..  .....+..+..  ...+.+.|+|.|+++
T Consensus       435 KdIp--ve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk--~~~N~vfwsPkG~fv  507 (698)
T KOG2314|consen  435 KDIP--VEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKELDK--KFANTVFWSPKGRFV  507 (698)
T ss_pred             cCCC--ceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEeecCC--Cchhhhhhhcc--cccceEEEcCCCcEE
Confidence            7743  22235678899999999 666555433 2  3578899888411  11445555553  567899999999987


Q ss_pred             EEEe--eCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee------eEEE
Q 046899          304 FGSS--AEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK------VLEI  375 (407)
Q Consensus       304 l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~------~i~i  375 (407)
                      ++.+  |..|.+.++|+.-......-.......+.+.|.|.                  |.++++++.-.      .-+|
T Consensus       508 vva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPt------------------GRYvvT~ss~wrhk~d~GYri  569 (698)
T KOG2314|consen  508 VVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPT------------------GRYVVTSSSSWRHKVDNGYRI  569 (698)
T ss_pred             EEEEecccccceEEEecchhhhhhccCccccccccceECCC------------------CCEEEEeeehhhhccccceEE
Confidence            5433  45789999998852222222222333455666665                  77888776643      6788


Q ss_pred             eecc
Q 046899          376 WRMI  379 (407)
Q Consensus       376 wd~~  379 (407)
                      |++.
T Consensus       570 ~tfq  573 (698)
T KOG2314|consen  570 FTFQ  573 (698)
T ss_pred             EEee
Confidence            8886

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.13  E-value=1.1e-09  Score=89.50  Aligned_cols=150  Identities=21%  Similarity=0.300  Sum_probs=102.9

Q ss_pred             CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEE
Q 046899          217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQW  296 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~  296 (407)
                      +..+.|+++..+.  ..........|.+++-+|...+++++|+.||.+-+||.|+.     ..+...++.|+.+++.+-|
T Consensus       159 d~~~a~~~~p~~t--~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-----~~p~S~l~ahk~~i~eV~F  231 (319)
T KOG4714|consen  159 DNFYANTLDPIKT--LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-----AMPVSLLKAHKAEIWEVHF  231 (319)
T ss_pred             cceeeeccccccc--ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-----cchHHHHHHhhhhhhheec
Confidence            4566777765442  11111223349999999977888999999999999999985     3677788899999999999


Q ss_pred             cCCC-CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc-------chhccccceeeeeEeeCccceeeeEE
Q 046899          297 SPDK-SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD-------MLDIETKLLTSIGMHLIHGRLLVCLT  368 (407)
Q Consensus       297 ~~~~-~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d-------~~~~~~~~~~~~~~~~~~~~~i~~~~  368 (407)
                      ||.. .+|| +++.||.+-.||..+ ..+. ..... .+-..-.|.|       +..+......++-.+.-|+..+++|+
T Consensus       232 Hpk~p~~Lf-t~sedGslw~wdas~-~~l~-i~~~~-s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgt  307 (319)
T KOG4714|consen  232 HPKNPEHLF-TCSEDGSLWHWDAST-TFLS-ISNQA-SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGT  307 (319)
T ss_pred             cCCCchhee-EecCCCcEEEEcCCC-ceEE-ecCcc-ccccccccCCcccceEeeeccccccceeeeeeeccCceEEecc
Confidence            9965 4565 999999999999874 2221 11111 1111111111       23333444556677888899999999


Q ss_pred             EeeeEEEee
Q 046899          369 MVKVLEIWR  377 (407)
Q Consensus       369 ~d~~i~iwd  377 (407)
                      ..+.|++++
T Consensus       308 d~eaIyl~~  316 (319)
T KOG4714|consen  308 DAEAIYLTR  316 (319)
T ss_pred             ccceEEEec
Confidence            999998875

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=2.3e-08  Score=90.39  Aligned_cols=112  Identities=18%  Similarity=0.379  Sum_probs=86.9

Q ss_pred             cCcceEEEEecCCCCCEEEE--EeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--CCeE
Q 046899          238 HNADIHCVDWNPHDVNLILT--GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGIL  313 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~t--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i  313 (407)
                      -.++|.++.|+| +++.|++  |-.=..+.|||++       +.++..+.  .++=+++-|+|.|++|+.+|-.  -|.|
T Consensus       269 k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr-------~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~m  338 (566)
T KOG2315|consen  269 KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR-------GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDM  338 (566)
T ss_pred             CCCCceEEEECC-CCCEEEEEEecccceEEEEcCC-------CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCce
Confidence            367999999999 7776655  3445689999999       58888885  5778899999999977655433  4889


Q ss_pred             EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE------eeeEEEeecc
Q 046899          314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM------VKVLEIWRMI  379 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~------d~~i~iwd~~  379 (407)
                      -|||+.+.+++..+......  -..|+||                  +.++++++.      |..++||++.
T Consensus       339 EvwDv~n~K~i~~~~a~~tt--~~eW~Pd------------------Ge~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  339 EVWDVPNRKLIAKFKAANTT--VFEWSPD------------------GEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EEEeccchhhccccccCCce--EEEEcCC------------------CcEEEEEeccccEEecCCeEEEEec
Confidence            99999998888888765542  3567777                  888886655      5689999995

>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3

Probab=99.09  E-value=8.4e-11  Score=79.70  Aligned_cols=51  Identities=39%  Similarity=0.726  Sum_probs=38.4

Q ss_pred             hhhhhhhhccCceEEEeeeecccCCCeeEEEEeecccccCc---cceEEEEeec
Q 046899           13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATY---KNRQRLYLSE   63 (407)
Q Consensus        13 ~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~~~~~~~---~~~~~i~~~~   63 (407)
                      +|++++||+|.|++|++++.+.++||+++|+|+|+...+..   -..+++.+|+
T Consensus         1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT   54 (74)
T PF12265_consen    1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGT   54 (74)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE-
T ss_pred             CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEE
Confidence            58999999999999999999999999999999998763222   3477888777

1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.08  E-value=4.6e-09  Score=89.28  Aligned_cols=248  Identities=17%  Similarity=0.217  Sum_probs=154.1

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc-CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE-AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      .+..||.+.|+.....| ..+-+.+.+.|.++|||--. .++.-..+. |..+.+   -+..-+..+..           
T Consensus        18 ~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~---~~~~~y~~e~~-----------   81 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSP---CSAMEYVSESR-----------   81 (404)
T ss_pred             hhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhh-hhCCCC---ceEeeeeccce-----------
Confidence            34458999999988888 45568899999999999543 332222111 111111   11111111111           


Q ss_pred             cccccCCCCCccccccCCCCCCC----CCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899          156 KSTASGGANSKNASKSGGNGDKP----LESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA  231 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i----~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  231 (407)
                                .+..+-..|++.-    -|.++....+.+..|...|..+-|+-.. ..+++.+.|..+.---.+.+...-
T Consensus        82 ----------~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg  150 (404)
T KOG1409|consen   82 ----------RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLG  150 (404)
T ss_pred             ----------EEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCccc
Confidence                      1111111111111    1335556667777899999999998776 788888888776544444443110


Q ss_pred             eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      -..+   .....++.+.-   .+...|...|.|.+-.+....    ..++.++.+|.+.+++++|.|....| .+|..|.
T Consensus       151 ~Y~~---~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~----~~~i~~~~~h~~~~~~l~Wd~~~~~L-fSg~~d~  219 (404)
T KOG1409|consen  151 GYNF---ETPASALQFDA---LYAFVGDHSGQITMLKLEQNG----CQLITTFNGHTGEVTCLKWDPGQRLL-FSGASDH  219 (404)
T ss_pred             ceEe---eccCCCCceee---EEEEecccccceEEEEEeecC----CceEEEEcCcccceEEEEEcCCCcEE-EeccccC
Confidence            0111   11112233322   256677777777666554422    67899999999999999999988855 5999999


Q ss_pred             eEEEEeCCCCCcc-cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          312 ILNIWDHEKIGEK-QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       312 ~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      .+.+||+.-.+-. ....+|...|..+..                  -.|...+.+...||.|.+|+.+-
T Consensus       220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~------------------~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  220 SVIMWDIGGRKGTAYELQGHNDKVQALSY------------------AQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ceEEEeccCCcceeeeeccchhhhhhhhh------------------hhhheeeeeccCCCeEEEEeccc
Confidence            9999999865443 344566666666555                  23477888999999999999863

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.08  E-value=1e-09  Score=92.60  Aligned_cols=172  Identities=13%  Similarity=0.147  Sum_probs=117.4

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC-CEEEEEeCCCcEEEEeCCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV-NLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      +.|.-|.|..+...++.....|+.|.+|++.+.+  -.-.+..-...+.+++|+| +| .+|.+..-|-+|.+|.+.+  
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t--  123 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNT--  123 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEecc--
Confidence            3466678887776677788889999999999887  4556667788899999999 77 4556677788999999998  


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe---EEEEeCCCCCcccccccCCCcccCCCCcCc-----chh
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI---LNIWDHEKIGEKQDYGELKYPIIHPAYSSD-----MLD  345 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~---i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d-----~~~  345 (407)
                           +...-++.-+..+..++|+|+|++. |.++.-..   +.+..-.....+..+.-.....+++.||||     +|+
T Consensus       124 -----~~~~~~~~pK~~~kg~~f~~dg~f~-ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd  197 (447)
T KOG4497|consen  124 -----QKGYLLPHPKTNVKGYAFHPDGQFC-AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD  197 (447)
T ss_pred             -----ceeEEecccccCceeEEECCCCcee-eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec
Confidence                 3444444445567899999999965 44443211   222222223334455555667788999998     233


Q ss_pred             cccc---------ceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899          346 IETK---------LLTSIGMHLIHGRLLVCLTMVKVLEIWR  377 (407)
Q Consensus       346 ~~~~---------~~~~~~~~~~~~~~i~~~~~d~~i~iwd  377 (407)
                      ..-.         .-......++.+..|+.|+.|+.+||-+
T Consensus       198 ~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  198 NVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             chhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence            3211         1112234556688899999999888754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.08  E-value=3.5e-09  Score=91.81  Aligned_cols=105  Identities=22%  Similarity=0.238  Sum_probs=83.5

Q ss_pred             EEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCC
Q 046899          212 SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAA  290 (407)
Q Consensus       212 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~  290 (407)
                      ..+....+.+|....+.   .....+|-+.++.++|+| |+++++++..|..|++-....      ...+..|- +|+.-
T Consensus       127 kagD~~~~di~s~~~~~---~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa------~f~IesfclGH~eF  196 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGR---CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA------TFVIESFCLGHKEF  196 (390)
T ss_pred             ecCCceeeeeecccccC---cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCc------ccchhhhccccHhh
Confidence            34445556666655533   445569999999999999 889999999999999987766      44555554 59999


Q ss_pred             EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                      |..++.-++.. | +|+|.|+++++||+.+++++.+++
T Consensus       197 VS~isl~~~~~-L-lS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  197 VSTISLTDNYL-L-LSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eeeeeeccCce-e-eecCCCCcEEEEecccCCcccccc
Confidence            99999987765 4 599999999999999999987665

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=2.4e-08  Score=93.35  Aligned_cols=181  Identities=12%  Similarity=0.058  Sum_probs=101.8

Q ss_pred             EEEEEECCCCCcEEEEEeCCC----cEEEEEcCCCCC-CceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDS----CLILWDARSGST-PAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRR  270 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~  270 (407)
                      ....+|+|+|..++++...+|    .+.+|++..+.. ................+|+| |++.|+..+ .+|...+|.+.
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEE
Confidence            345799999944444433223    345577765321 11222222223446789999 888776554 46765566443


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccc
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIET  348 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~  348 (407)
                      ....   +.....+..+...+....|+|||++|+.++..+  ..|.+||+.+++.. .+......+..+.|+||      
T Consensus       312 ~~~~---g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpD------  381 (428)
T PRK01029        312 IDPE---GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAID------  381 (428)
T ss_pred             Cccc---ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCC------
Confidence            2100   223444544555678899999999875454433  47999999886543 33333344566788887      


Q ss_pred             cceeeeeEeeCccceeeeEEE---eeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          349 KLLTSIGMHLIHGRLLVCLTM---VKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~i~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                                  +..|+....   ...|.++|+.      .++. ..+....+.+...+||+
T Consensus       382 ------------G~~L~f~~~~~g~~~L~~vdl~------~g~~-~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        382 ------------SLHLVYSAGNSNESELYLISLI------TKKT-RKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             ------------CCEEEEEECCCCCceEEEEECC------CCCE-EEeecCCCcccCceecC
Confidence                        555553222   2478888886      3322 22222334455666664

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=2.1e-08  Score=90.79  Aligned_cols=180  Identities=12%  Similarity=0.209  Sum_probs=129.4

Q ss_pred             CcEEEEecccccc--ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee------ccc-----CEEEE
Q 046899          134 QSVVLWSIQDHVS--ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG------HED-----TVEDV  200 (407)
Q Consensus       134 ~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~------~~~-----~v~~l  200 (407)
                      ..|.-++++.+..  .+......+..+........+++|+.+|.+..||......+..+..      |.+     .|+++
T Consensus       155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal  234 (703)
T KOG2321|consen  155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL  234 (703)
T ss_pred             cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence            3445555555533  2333334445555555666788899999999999887776665542      222     49999


Q ss_pred             EECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC-CCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 046899          201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD-VNLILTGSADNSIHMFDRRKLTSDGVGS  279 (407)
Q Consensus       201 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~tg~~dg~i~vwd~~~~~~~~~~~  279 (407)
                      +|+.+| -.+++|+.+|.+.|||+++.++ ....-....-+|..+.|.+.+ ++.+++ .....++|||-.+      ++
T Consensus       235 ~F~d~g-L~~aVGts~G~v~iyDLRa~~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~------Gk  305 (703)
T KOG2321|consen  235 KFRDDG-LHVAVGTSTGSVLIYDLRASKP-LLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECT------GK  305 (703)
T ss_pred             EecCCc-eeEEeeccCCcEEEEEcccCCc-eeecccCCccceeeecccccCCCceEEe-cchHHhhhccccc------CC
Confidence            999988 7899999999999999999883 233333445688999997743 344444 4457899999999      88


Q ss_pred             ceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          280 PIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       280 ~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                      +...+.. ...++.+++-|++..+ .++-.+..+..|=+......
T Consensus       306 ~~asiEp-t~~lND~C~~p~sGm~-f~Ane~~~m~~yyiP~LGPa  348 (703)
T KOG2321|consen  306 PMASIEP-TSDLNDFCFVPGSGMF-FTANESSKMHTYYIPSLGPA  348 (703)
T ss_pred             ceeeccc-cCCcCceeeecCCceE-EEecCCCcceeEEccccCCC
Confidence            8888875 4559999999998855 48888888888877765443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.05  E-value=1.3e-08  Score=95.73  Aligned_cols=173  Identities=14%  Similarity=0.147  Sum_probs=114.0

Q ss_pred             CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---CcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899          175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      .+.++|..... ...+..+...+...+|+|++ +.|+.+..+   ..|++||+.++.   ...+..+...+.+++|+| +
T Consensus       171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~---~~~~~~~~~~~~~~~~sp-D  244 (417)
T TIGR02800       171 ELQVADYDGAN-PQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQ---REKVASFPGMNGAPAFSP-D  244 (417)
T ss_pred             eEEEEcCCCCC-CEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCC---EEEeecCCCCccceEECC-C
Confidence            45556654333 44555566778999999999 666665543   479999998876   223334555667799999 7


Q ss_pred             CCEEE-EEeCCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccc
Q 046899          252 VNLIL-TGSADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQD  326 (407)
Q Consensus       252 ~~~l~-tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~  326 (407)
                      ++.|+ +.+.++  .|++||+.+      + ....+..+.......+|+|+|++|+.++..++  .|.++|+...+ ...
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~------~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~  316 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDG------K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRR  316 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCC------C-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEE
Confidence            77665 445444  588888876      3 34445555555667899999998764544443  57788887644 333


Q ss_pred             cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecc
Q 046899          327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMI  379 (407)
Q Consensus       327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~  379 (407)
                      +.........+.|+||                  +..|+..+.++   .|.+||+.
T Consensus       317 l~~~~~~~~~~~~spd------------------g~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       317 LTFRGGYNASPSWSPD------------------GDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             eecCCCCccCeEECCC------------------CCEEEEEEccCCceEEEEEeCC
Confidence            3334445566777777                  66677666655   78888876

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=8.9e-10  Score=99.13  Aligned_cols=187  Identities=16%  Similarity=0.307  Sum_probs=130.8

Q ss_pred             CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899           71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAA  150 (407)
Q Consensus        71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~  150 (407)
                      ...+......||+..|..+.-.. +.+-+++++.|++|++|.+...-..                               
T Consensus       723 ~~~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~-------------------------------  770 (1034)
T KOG4190|consen  723 FDHIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDE-------------------------------  770 (1034)
T ss_pred             cceeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCc-------------------------------
Confidence            33445556678999999998665 7788999999999999998753100                               


Q ss_pred             CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                                                    ..+..+..++..|+.+|..+.|..+- +.+++  .||.|++||.--++..
T Consensus       771 ------------------------------~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~L  817 (1034)
T KOG4190|consen  771 ------------------------------IGTSACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLL  817 (1034)
T ss_pred             ------------------------------cccceeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccccchh
Confidence                                          12233567788999999999998876 56655  4899999998766621


Q ss_pred             ceeeec---ccCcceEEEEecCCCCCEEEE-EeCCCcEEEEeCCCCCCCCCCCceeeec-----CCCCCEEEEEEcCCCC
Q 046899          231 AVKVEK---AHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRRKLTSDGVGSPIHKFE-----GHSAAVLCVQWSPDKS  301 (407)
Q Consensus       231 ~~~~~~---~~~~~v~~l~~~~~~~~~l~t-g~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~  301 (407)
                      ......   +..+.|.|+.--  +..++.. ++...+|+++|.|.      ++-..+++     +.++.+++++..+.|.
T Consensus       818 aq~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRs------ce~~~E~kVcna~~Pna~~R~iaVa~~GN  889 (1034)
T KOG4190|consen  818 AQMEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARS------CEWTCELKVCNAPGPNALTRAIAVADKGN  889 (1034)
T ss_pred             HhhhcCcccCCCceeEecccC--cchheeeeccchhhheeeeccc------ccceeeEEeccCCCCchheeEEEeccCcc
Confidence            111111   122334443221  3344444 47789999999998      55555554     3456799999999999


Q ss_pred             CEEEEeeCCCeEEEEeCCCCCcccccccCC
Q 046899          302 SVFGSSAEDGILNIWDHEKIGEKQDYGELK  331 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~  331 (407)
                      ++ |.+-..|.|.+-|.++++.+-.+....
T Consensus       890 ~l-Aa~LSnGci~~LDaR~G~vINswrpme  918 (1034)
T KOG4190|consen  890 KL-AAALSNGCIAILDARNGKVINSWRPME  918 (1034)
T ss_pred             hh-hHHhcCCcEEEEecCCCceeccCCccc
Confidence            86 688889999999999988776655433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=6.1e-08  Score=87.69  Aligned_cols=213  Identities=20%  Similarity=0.261  Sum_probs=134.6

Q ss_pred             eCCCceEEEEEeCC-CCeEEEE-----eeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899           81 IHPGEVNRIRELPQ-NSKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        81 ~h~~~v~~l~~~~~-~~~~l~t-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      -|...|+.+.++|. ....+|+     +|.-+.||||.+........+.....+..  |.....|+-.....        
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka--dkvqm~WN~~gt~L--------  232 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA--DKVQMKWNKLGTAL--------  232 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc--ceeEEEeccCCceE--------
Confidence            37888999999984 3344543     35567899999874332222211111111  56667777443211        


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE--eCCCcEEEEEcCCCCCCce
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV--GDDSCLILWDARSGSTPAV  232 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~  232 (407)
                       -.++....+....+--++.++.+++++.......+ ...++|.++.|+|++ ..|+++  -.=.++.|||++- .  .+
T Consensus       233 -LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~-~--~v  306 (566)
T KOG2315|consen  233 -LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRG-K--PV  306 (566)
T ss_pred             -EEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCC-C--Ee
Confidence             11111222222333334555555555522222222 347899999999999 555554  3456899999873 3  24


Q ss_pred             eeecccCcceEEEEecCCCCCEEEEEeC---CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          233 KVEKAHNADIHCVDWNPHDVNLILTGSA---DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       233 ~~~~~~~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                      ..+  -.++=+++-|+| .|++++.++-   -|.|-|||+.+      .+++..+..-..  +-..|+|||++++.+...
T Consensus       307 ~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n------~K~i~~~~a~~t--t~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  307 FDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN------RKLIAKFKAANT--TVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             EeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccc------hhhccccccCCc--eEEEEcCCCcEEEEEecc
Confidence            333  345668899999 8888887765   47899999999      788988886544  457899999998633333


Q ss_pred             -----CCeEEEEeCCC
Q 046899          310 -----DGILNIWDHEK  320 (407)
Q Consensus       310 -----d~~i~vwd~~~  320 (407)
                           |+.++||+..-
T Consensus       376 PRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  376 PRLRVDNGIKIWHYTG  391 (566)
T ss_pred             ccEEecCCeEEEEecC
Confidence                 78999999874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.02  E-value=2.2e-09  Score=89.95  Aligned_cols=218  Identities=15%  Similarity=0.281  Sum_probs=137.6

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC-Cc----ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP-NR----HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~-~~----~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      ....|+++.|.- .|.+|+||...|.|.++.-.... +.    ..+++|...                            
T Consensus        25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E----------------------------   75 (460)
T COG5170          25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE----------------------------   75 (460)
T ss_pred             ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccc----------------------------
Confidence            567799999876 88999999999999999865432 11    112222111                            


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCC------
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGST------  229 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~------  229 (407)
                                                 ..-+..+ .-...|..|.|..+ +.+.|...+.|.+|++|-+.....      
T Consensus        76 ---------------------------FDYLkSl-eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~n  127 (460)
T COG5170          76 ---------------------------FDYLKSL-EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAEN  127 (460)
T ss_pred             ---------------------------hhhhhhc-cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcc
Confidence                                       0001111 13456778887654 445677778899999998875410      


Q ss_pred             -----------------------------------CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899          230 -----------------------------------PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       230 -----------------------------------~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~  274 (407)
                                                         |+......|..-+++++++. +...++++ .|-.|.+|++..+..
T Consensus       128 nls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~  205 (460)
T COG5170         128 NLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDG  205 (460)
T ss_pred             ccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCC
Confidence                                               01111135667788999998 77777665 477899999987431


Q ss_pred             CCCCCceeeecCCC-----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc----cc------------cCCCc
Q 046899          275 DGVGSPIHKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD----YG------------ELKYP  333 (407)
Q Consensus       275 ~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~----~~------------~~~~~  333 (407)
                         .--+-.++.|.     .-|++..|||....+|.-++..|.|++-|++.......    ++            +.-..
T Consensus       206 ---sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsS  282 (460)
T COG5170         206 ---SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSS  282 (460)
T ss_pred             ---ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhh
Confidence               11223344443     36899999998777777788899999999995322211    11            11122


Q ss_pred             ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          334 IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       334 v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      |..+.|+++                  +.+|++-..- +|+|||++.
T Consensus       283 ISD~kFs~n------------------gryIlsRdyl-tvkiwDvnm  310 (460)
T COG5170         283 ISDFKFSDN------------------GRYILSRDYL-TVKIWDVNM  310 (460)
T ss_pred             hcceEEcCC------------------CcEEEEeccc-eEEEEeccc
Confidence            333444443                  6777766555 899999974

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=1.1e-07  Score=88.87  Aligned_cols=136  Identities=13%  Similarity=0.148  Sum_probs=84.3

Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEc--CCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---CcEEEEeCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDA--RSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---NSIHMFDRRK  271 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~  271 (407)
                      ....+|+|+|..++++...+|...+|.+  ..... ....+..+...+....|+| +++.|+..+.+   ..|.+||+..
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence            3567999999434444445676566644  32111 1333334445667899999 88887765443   3689999987


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                            ++. ..+......+....|+|||++|+.++..  ...|.++|+..++.. .+....+.+..++|||-
T Consensus       361 ------g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        361 ------GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             ------CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCcccCceecCC
Confidence                  443 3443333457789999999987655543  356888898875543 33333444556667653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.01  E-value=7.7e-08  Score=86.10  Aligned_cols=298  Identities=18%  Similarity=0.209  Sum_probs=176.7

Q ss_pred             cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCC-----
Q 046899           35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSP-----  106 (407)
Q Consensus        35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg-----  106 (407)
                      -.||....+|.|.   ++.....+ +.+|-+         |.........|. .|..+.|+| ++++|.|-+..+     
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g---------~~~~~l~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe   98 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGG---------PSKAKLVRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPE   98 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccc---------cchhheeeeecC-CceecccCc-ccceeeeeccCCccChh
Confidence            5789999999884   44444443 677722         222233334455 599999999 999999986544     


Q ss_pred             ----------cEEEEeCcCCCCcccccCcCCC--CC--------CC------CCcEEEEeccccccccccC---CCCC-c
Q 046899          107 ----------DVLIWDVEAQPNRHAVLGAADS--HP--------DL------DQSVVLWSIQDHVSALAAE---PGSA-K  156 (407)
Q Consensus       107 ----------~i~vwd~~~~~~~~~~~~~~~~--~~--------~~------d~~i~~w~~~~~~~~~~~~---~~~~-~  156 (407)
                                .+.+||+.++..+..+......  .-        +.      ...+.++++........+.   +.++ .
T Consensus        99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~d  178 (561)
T COG5354          99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILD  178 (561)
T ss_pred             hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceee
Confidence                      4999999999877665543322  00        00      5667777753221111110   1111 1


Q ss_pred             c--cccCCCCCcccc-----ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe----------CCCcE
Q 046899          157 S--TASGGANSKNAS-----KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG----------DDSCL  219 (407)
Q Consensus       157 ~--~~~~~~~~~~~~-----~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~----------~dg~i  219 (407)
                      |  .+.+ ....++.     ......+++|.+.....+.+-.-....=..+.|++.|..+++-.-          ....+
T Consensus       179 FsisP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL  257 (561)
T COG5354         179 FSISPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL  257 (561)
T ss_pred             EEecCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence            1  1111 1111122     455667777777766555443322233356889998843333221          12568


Q ss_pred             EEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE--eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc
Q 046899          220 ILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG--SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS  297 (407)
Q Consensus       220 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~  297 (407)
                      .|++++....   .......++|...+|.| .++.+++.  -.+-.+.++|++.       .....+.  ...=+.+-|+
T Consensus       258 yl~~~~e~~i---~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~-------Nl~~~~P--e~~rNT~~fs  324 (561)
T COG5354         258 YLLRITERSI---PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRG-------NLRFYFP--EQKRNTIFFS  324 (561)
T ss_pred             EEEeeccccc---ceeccccccceeeeecc-cCCceeEEecccccceeeccccc-------ceEEecC--Cccccccccc
Confidence            8888886552   22226688999999999 66655544  4678999999996       5554444  3445678899


Q ss_pred             CCCCCEEEEeeC---CCeEEEEeCCCCCccc-ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee------E
Q 046899          298 PDKSSVFGSSAE---DGILNIWDHEKIGEKQ-DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC------L  367 (407)
Q Consensus       298 ~~~~~ll~s~~~---d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~------~  367 (407)
                      |.++++| .++-   .|.|-+||....-.+. .+.+...  +-..||||.                  .++.+      -
T Consensus       325 p~~r~il-~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~------------------qF~~~~~ts~k~  383 (561)
T COG5354         325 PHERYIL-FAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDG------------------QFYDTDTTSEKL  383 (561)
T ss_pred             CcccEEE-EecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCc------------------eEEEecCCCccc
Confidence            9999987 4443   4789999987644333 4544332  234577772                  22221      1


Q ss_pred             EEeeeEEEeecc
Q 046899          368 TMVKVLEIWRMI  379 (407)
Q Consensus       368 ~~d~~i~iwd~~  379 (407)
                      -.|..|+|||+.
T Consensus       384 ~~Dn~i~l~~v~  395 (561)
T COG5354         384 RVDNSIKLWDVY  395 (561)
T ss_pred             ccCcceEEEEec
Confidence            346699999996

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=5.1e-08  Score=91.91  Aligned_cols=172  Identities=14%  Similarity=0.157  Sum_probs=107.4

Q ss_pred             CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899          176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV  252 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  252 (407)
                      +.++|...... +.+..+...+...+|+|+| +.|+..+.+   ..|.+||+.+++.   ..+....+.+....|+| ++
T Consensus       181 l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~---~~l~~~~g~~~~~~~Sp-DG  254 (430)
T PRK00178        181 LQRSDYDGARA-VTLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRR---EQITNFEGLNGAPAWSP-DG  254 (430)
T ss_pred             EEEECCCCCCc-eEEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCE---EEccCCCCCcCCeEECC-CC
Confidence            55556654443 4455567788999999999 556554432   3689999988762   22333334455789999 78


Q ss_pred             CEEE-EEeCCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCccccc
Q 046899          253 NLIL-TGSADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDY  327 (407)
Q Consensus       253 ~~l~-tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~  327 (407)
                      +.|+ +.+.+|  .|.++|+.+      ++ ...+..+........|+|+|+.|+.++..++  .|.++|+..++.. .+
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~------~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~l  326 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLAS------RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RV  326 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCC------CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee
Confidence            7766 455555  588889886      33 4445555556677899999998765554444  5777787765432 22


Q ss_pred             ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe-e--eEEEeecc
Q 046899          328 GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV-K--VLEIWRMI  379 (407)
Q Consensus       328 ~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~--~i~iwd~~  379 (407)
                      .........+.||||                  +..|+..+.. +  .|.+||+.
T Consensus       327 t~~~~~~~~~~~Spd------------------g~~i~~~~~~~~~~~l~~~dl~  363 (430)
T PRK00178        327 TFVGNYNARPRLSAD------------------GKTLVMVHRQDGNFHVAAQDLQ  363 (430)
T ss_pred             ecCCCCccceEECCC------------------CCEEEEEEccCCceEEEEEECC
Confidence            211222234567777                  5555544332 2  57788876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.95  E-value=2.1e-07  Score=84.85  Aligned_cols=164  Identities=16%  Similarity=0.197  Sum_probs=102.3

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce--ee-ecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV--KV-EKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRR  270 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~-~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~  270 (407)
                      ....++.++|++..++++.-....|.+|++........  .. ..........+.|+| +++++++. -.++.|.+|++.
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEE
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeec
Confidence            45678999999944454444566899999987652111  11 123455678999999 77766554 557889999988


Q ss_pred             CCCCCCCCCceeeecC------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-CCcc---cccccCCCcccCCCCc
Q 046899          271 KLTSDGVGSPIHKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK-IGEK---QDYGELKYPIIHPAYS  340 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~-~~~~---~~~~~~~~~v~~~~~s  340 (407)
                      ...  +..+.+..+..      .......|+++|+|++|+++...+++|.+|++.. ...+   ..+.......+.++++
T Consensus       223 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s  300 (345)
T PF10282_consen  223 PSD--GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS  300 (345)
T ss_dssp             TTT--TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred             ccC--CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence            311  00122222221      1226889999999999999998899999999943 2222   2333323334556666


Q ss_pred             CcchhccccceeeeeEeeCccceeeeEEEee-eEEEeecc
Q 046899          341 SDMLDIETKLLTSIGMHLIHGRLLVCLTMVK-VLEIWRMI  379 (407)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~i~iwd~~  379 (407)
                      |+                  +++|+.+..++ .|.+|++.
T Consensus       301 ~~------------------g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  301 PD------------------GRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TT------------------SSEEEEEETTTTEEEEEEEE
T ss_pred             CC------------------CCEEEEEecCCCeEEEEEEe
Confidence            66                  77777766544 89999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.93  E-value=2.3e-06  Score=73.89  Aligned_cols=161  Identities=12%  Similarity=0.159  Sum_probs=106.3

Q ss_pred             EEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCcee-eecccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVK-VEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLT  273 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~  273 (407)
                      +....+.|++ +++++... --+|.+|++..+...... ....-...-..|.|+| ++++....+. +++|-+|......
T Consensus       147 ~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~  224 (346)
T COG2706         147 VHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAV  224 (346)
T ss_pred             cceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCC
Confidence            7788999999 67766643 347999999977622111 1113345668999999 8888776654 7899999988631


Q ss_pred             CCCCCCceeee---cC---CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc----cCCCcccCCCCcCcc
Q 046899          274 SDGVGSPIHKF---EG---HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG----ELKYPIIHPAYSSDM  343 (407)
Q Consensus       274 ~~~~~~~~~~~---~~---h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~s~d~  343 (407)
                        +..+.++.+   ..   .......|..+++|++|.|+--....|-++.+........+.    .+......       
T Consensus       225 --g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~-------  295 (346)
T COG2706         225 --GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD-------  295 (346)
T ss_pred             --ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc-------
Confidence              001222222   11   245678899999999998777777889999888654433332    22222233       


Q ss_pred             hhccccceeeeeEeeCccceeeeEEEee-eEEEeecc
Q 046899          344 LDIETKLLTSIGMHLIHGRLLVCLTMVK-VLEIWRMI  379 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~i~iwd~~  379 (407)
                                 |.+..+++.|++...++ .|.||.+.
T Consensus       296 -----------F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         296 -----------FNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             -----------ceeCCCCCEEEEEccCCCcEEEEEEc
Confidence                       33444478888777777 89999886

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=4.8e-07  Score=85.31  Aligned_cols=133  Identities=13%  Similarity=0.060  Sum_probs=78.8

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCc--EEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSC--LILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRR  270 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~  270 (407)
                      .....+|+|++..++++...++.  |.++|+.+++.   ..+..........+|+| ++++++..+. ++  .|.++|+.
T Consensus       307 ~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~  382 (448)
T PRK04792        307 IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLE  382 (448)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECC
Confidence            34567899999444444444444  56667766652   22222222334578999 7877766554 44  45556776


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe--EEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI--LNIWDHEKIGEKQDYGELKYPIIHPAYSS  341 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~  341 (407)
                      .      ++. ..+... .......|+|+|++|+.+...++.  +.++++. ++..+.+....+.+..++|||
T Consensus       383 ~------g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        383 T------GAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             C------CCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence            5      332 333322 122345799999988766665554  6677764 455566655556677788876

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.90  E-value=7e-08  Score=87.98  Aligned_cols=145  Identities=12%  Similarity=0.192  Sum_probs=102.0

Q ss_pred             cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec
Q 046899          169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN  248 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~  248 (407)
                      +-..++.+.++|..+.+.+..+......-..+.|+|++ +++++++.||.|.++|+.+.+  .+..... .....+++++
T Consensus        11 ~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~--~v~~i~~-G~~~~~i~~s   86 (369)
T PF02239_consen   11 VERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGK--VVATIKV-GGNPRGIAVS   86 (369)
T ss_dssp             EEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSS--EEEEEE--SSEEEEEEE-
T ss_pred             EecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCccc--EEEEEec-CCCcceEEEc
Confidence            45567888889999999999887654444557899999 778888899999999999988  5666543 4456889999


Q ss_pred             CCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCceeeecCC-------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          249 PHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIHKFEGH-------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       249 ~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      + +++++++++ ..+.+.++|.++      .+++..+...       ...+..+..+|..+..+++--.-+.|-+-|...
T Consensus        87 ~-DG~~~~v~n~~~~~v~v~D~~t------le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   87 P-DGKYVYVANYEPGTVSVIDAET------LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             C-CCCEEEEEecCCCceeEecccc------ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            9 899888776 578999999999      7888887643       346788888888885444555558888889887


Q ss_pred             CCcc
Q 046899          321 IGEK  324 (407)
Q Consensus       321 ~~~~  324 (407)
                      .+.+
T Consensus       160 ~~~~  163 (369)
T PF02239_consen  160 PKNL  163 (369)
T ss_dssp             SSCE
T ss_pred             cccc
Confidence            6444

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=7.2e-09  Score=88.18  Aligned_cols=168  Identities=13%  Similarity=0.113  Sum_probs=117.6

Q ss_pred             ccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEE
Q 046899          168 ASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCV  245 (407)
Q Consensus       168 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l  245 (407)
                      ++.+.+..+-+.+..++-. +.+. ....|.++.|...+ +++..|..+|.|...|+|.+.+.  .......|.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence            3344445555555555432 2232 56788999999888 79999999999999999986311  122334689999998


Q ss_pred             EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEE--cCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQW--SPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      ..-..++.+|++.+.+|.|++||+|..+.   ++.+.++.+|-..-.-+-+  .+....+ ++++.|...|+|.++.+..
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~---~~~V~qYeGHvN~~a~l~~~v~~eeg~I-~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKC---KKSVMQYEGHVNLSAYLPAHVKEEEGSI-FSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhc---ccceeeeecccccccccccccccccceE-EEccCeeEEEEEecccCce
Confidence            87665778999999999999999998433   3348888888654333333  4455545 5899999999999999888


Q ss_pred             ccccccC----CCcccCCCCcCc
Q 046899          324 KQDYGEL----KYPIIHPAYSSD  342 (407)
Q Consensus       324 ~~~~~~~----~~~v~~~~~s~d  342 (407)
                      +.+++-.    +..+..++|...
T Consensus       381 l~tipf~~s~~e~d~~sv~~~sr  403 (425)
T KOG2695|consen  381 LCTIPFPYSASEVDIPSVAFDSR  403 (425)
T ss_pred             eeccCCCCccccccccceehhcc
Confidence            8776542    223455666443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.85  E-value=2.5e-08  Score=86.66  Aligned_cols=153  Identities=14%  Similarity=0.148  Sum_probs=101.0

Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCCCCEEEEEeCCC---cEEEEeCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADN---SIHMFDRRK  271 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg---~i~vwd~~~  271 (407)
                      ...+..++.+ .++|.+..+....+++++....  ..... ..-...-+++.+.. +......+..-|   .+.+|....
T Consensus        65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~-~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDV-SCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeE-eecccCcceeeeee-ccceEEEEeecCCceeeeeecccc
Confidence            3445567777 8899988888888888876552  11111 11122234444544 333444443334   444444443


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccc
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKL  350 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~  350 (407)
                             .+...+-+|-..+++|+|+||+++|+ |+..|..||+-.....-.+..+. +|..-|..++.-+         
T Consensus       142 -------~~~~~~lGhvSml~dVavS~D~~~Ii-taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~---------  204 (390)
T KOG3914|consen  142 -------GRCEPILGHVSMLLDVAVSPDDQFII-TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD---------  204 (390)
T ss_pred             -------cCcchhhhhhhhhheeeecCCCCEEE-EecCCceEEEEecCcccchhhhccccHhheeeeeecc---------
Confidence                   23344557999999999999999775 99999999998888766666554 5777666665522         


Q ss_pred             eeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          351 LTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       351 ~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                +..|++++.|++|++||+.
T Consensus       205 ----------~~~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  205 ----------NYLLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             ----------CceeeecCCCCcEEEEecc
Confidence                      3458999999999999998

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.84  E-value=3e-06  Score=75.80  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=82.4

Q ss_pred             ECC-CCCcEEEEEeCCCcEEEEEcCCCCCC---ceeeec-------ccCcceEEEEecCCCCCEEEEEe----------C
Q 046899          202 FCP-SSAQEFCSVGDDSCLILWDARSGSTP---AVKVEK-------AHNADIHCVDWNPHDVNLILTGS----------A  260 (407)
Q Consensus       202 ~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~-------~~~~~v~~l~~~~~~~~~l~tg~----------~  260 (407)
                      |.+ ++ .++....+ |.|.+-|+......   ....+.       -..+...-++++| +++.+++..          .
T Consensus       201 ~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~  277 (352)
T TIGR02658       201 YSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA  277 (352)
T ss_pred             eEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence            345 66 55555555 99999997544311   111111       1223344599999 666666632          2


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC-CEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                      .+.|.++|..+      ++.+..+.. ...+..++++||++ .|+++...++.|.+.|+.+++.+.++.
T Consensus       278 ~~~V~ViD~~t------~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       278 SRFLFVVDAKT------GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CCEEEEEECCC------CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            25799999999      888888874 45789999999999 777677678999999999998888873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.80  E-value=1.7e-06  Score=89.40  Aligned_cols=161  Identities=17%  Similarity=0.204  Sum_probs=98.9

Q ss_pred             EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc---------------cCcceEEEEecCCCCC-EEEEEeCC
Q 046899          198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA---------------HNADIHCVDWNPHDVN-LILTGSAD  261 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~v~~l~~~~~~~~-~l~tg~~d  261 (407)
                      ..++++|++..++++.+.++.|++||..++.   ...+.+               .-.....|+++| ++. ++++-..+
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n  761 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSES  761 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCC
Confidence            5789999554788888889999999987764   111111               112356799999 666 55566667


Q ss_pred             CcEEEEeCCCCCCCCCCCce-------------eeecCC--------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          262 NSIHMFDRRKLTSDGVGSPI-------------HKFEGH--------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       262 g~i~vwd~~~~~~~~~~~~~-------------~~~~~h--------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +.|++||+.+      +...             ..+..+        -.....++++++|. ++++-+.++.|++||..+
T Consensus       762 ~~Irv~D~~t------g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        762 SSIRALDLKT------GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             CeEEEEECCC------CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC
Confidence            8999999886      2211             011000        11246899999998 677888899999999987


Q ss_pred             CCcccccccCCC------cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          321 IGEKQDYGELKY------PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       321 ~~~~~~~~~~~~------~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      +... ++.+...      ......|+     .+.    . ......+..+++-+.+++|++||+..
T Consensus       835 g~v~-tiaG~G~~G~~dG~~~~a~l~-----~P~----G-Iavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        835 KRVT-TLAGTGKAGFKDGKALKAQLS-----EPA----G-LALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CeEE-EEeccCCcCCCCCcccccccC-----Cce----E-EEEeCCCCEEEEECCCCEEEEEECCC
Confidence            5433 2222111      00001110     001    1 12222255666777788999999974

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.77  E-value=2.7e-06  Score=71.30  Aligned_cols=214  Identities=11%  Similarity=0.114  Sum_probs=107.5

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN  164 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  164 (407)
                      .=+.++|+| ++.+||.+...|+|+++|+.... +..+........+....|.-         +.+....    ......
T Consensus        45 QWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiag---------l~Fl~~~----~s~~ws  109 (282)
T PF15492_consen   45 QWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAG---------LIFLEYK----KSAQWS  109 (282)
T ss_pred             hheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceee---------eEeeccc----cccccc
Confidence            356799999 88999999999999999998643 22332221111111111110         0000000    011112


Q ss_pred             CccccccCCCCCCCCCC-----CCcCceeeEe--e-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899          165 SKNASKSGGNGDKPLES-----PSIGARGKYL--G-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~-----~~~~~~~~~~--~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                      ..++.....|.++-+-+     +..+....+.  . +...|+++.++|.. ++|+.||....      +.+.      ..
T Consensus       110 ~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~------s~  176 (282)
T PF15492_consen  110 YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM------SK  176 (282)
T ss_pred             eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc------cc
Confidence            22333333333332221     1222223332  2 35689999999998 66666654221      0000      01


Q ss_pred             ccCcceEEEEecCCCCCEEE-EEeCCCc------EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          237 AHNADIHCVDWNPHDVNLIL-TGSADNS------IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~-tg~~dg~------i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                      +....+++-..-...+.+.. +...|+.      -.+|.+-+      .........-...|..|..||||. +||+...
T Consensus       177 a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~------~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~  249 (282)
T PF15492_consen  177 ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS------FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHF  249 (282)
T ss_pred             ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc------eeeeeccccCCCceEEEEECCCCC-EEEEEEc
Confidence            11222222222111111211 1111221      12222221      111111122457899999999999 5589999


Q ss_pred             CCeEEEEeCCCCCcccccccCCCc
Q 046899          310 DGILNIWDHEKIGEKQDYGELKYP  333 (407)
Q Consensus       310 d~~i~vwd~~~~~~~~~~~~~~~~  333 (407)
                      +|.|.+|++.+.+..+.....+.|
T Consensus       250 sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  250 SGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             CCeEEEEecCcchhhcccchhhCC
Confidence            999999999998888877665554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=6.4e-08  Score=90.02  Aligned_cols=175  Identities=15%  Similarity=0.180  Sum_probs=128.1

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      +.....+|++|+. +..++|+|+.||.++|-.+.+........+-..                                 
T Consensus        12 PnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa---------------------------------   57 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA---------------------------------   57 (1189)
T ss_pred             CCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCccccccccc---------------------------------
Confidence            4567789999998 677999999999999999887543322211100                                 


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                                          ..+...-+++.+|...|..+.|+... +.|.++..+|.|.+|=+-.++.-....-...++
T Consensus        58 --------------------~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKS  116 (1189)
T KOG2041|consen   58 --------------------ASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKS  116 (1189)
T ss_pred             --------------------ccccchhhhhccCcceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCcc
Confidence                                01122346788999999999999887 779999999999999999887422333334567


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      -|.+++|+. +|..++..-.||.|.+=.+..       ..+..-.-.......+.|++|.+.+| -+-..|.+.++|-.
T Consensus       117 vV~SmsWn~-dG~kIcIvYeDGavIVGsvdG-------NRIwgKeLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnq  186 (1189)
T KOG2041|consen  117 VVVSMSWNL-DGTKICIVYEDGAVIVGSVDG-------NRIWGKELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQ  186 (1189)
T ss_pred             EEEEEEEcC-CCcEEEEEEccCCEEEEeecc-------ceecchhcchheccceeecccHHHHH-hhhcCCcEEEeccc
Confidence            789999999 999999999999988876653       33321111123345789999998765 67778999999865

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.77  E-value=1.8e-08  Score=59.53  Aligned_cols=38  Identities=34%  Similarity=0.842  Sum_probs=34.9

Q ss_pred             CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          279 SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       279 ~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      +++.++.+|..+|++++|+|++.++ ++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~-~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFL-ASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEE-EEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccc-eeeCCCCEEEEEC
Confidence            5788999999999999999998855 7999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=1.7e-08  Score=85.93  Aligned_cols=154  Identities=16%  Similarity=0.208  Sum_probs=115.2

Q ss_pred             EEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC
Q 046899          211 CSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA  290 (407)
Q Consensus       211 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~  290 (407)
                      ++.+.+-.|-+-|+.++.   ...+. ..+.|.++.|.- .++++..|...|.|..+|+|.... +.+.+...+. |...
T Consensus       228 fs~G~sqqv~L~nvetg~---~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnq-G~~~~a~rly-h~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH---QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQ-GNGWCAQRLY-HDSS  300 (425)
T ss_pred             ecccccceeEEEEeeccc---ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeeccc-CCCcceEEEE-cCcc
Confidence            556667889999999886   33443 678899999987 789999999999999999997321 1245556665 8999


Q ss_pred             EEEEEEcC-CCCCEEEEeeCCCeEEEEeCCCCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899          291 VLCVQWSP-DKSSVFGSSAEDGILNIWDHEKIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC  366 (407)
Q Consensus       291 v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~  366 (407)
                      |++++.-. ++++|+ +.+.+|+|++||++..++   ++.+++|-..-.-+.+.                ...-+..|++
T Consensus       301 vtslq~Lq~s~q~Lm-aS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~----------------v~~eeg~I~s  363 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLM-ASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH----------------VKEEEGSIFS  363 (425)
T ss_pred             hhhhhhhccccceEe-eccCcCceeEeeehhhhcccceeeeecccccccccccc----------------cccccceEEE
Confidence            99998877 667665 778899999999998887   78888876543222221                1122557888


Q ss_pred             EEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          367 LTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       367 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      ++.|=..|||.+.      .+.++.++.
T Consensus       364 ~GdDcytRiWsl~------~ghLl~tip  385 (425)
T KOG2695|consen  364 VGDDCYTRIWSLD------SGHLLCTIP  385 (425)
T ss_pred             ccCeeEEEEEecc------cCceeeccC
Confidence            8899999999998      566666554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.74  E-value=3e-08  Score=58.60  Aligned_cols=38  Identities=18%  Similarity=0.515  Sum_probs=35.7

Q ss_pred             CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 046899          185 GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD  223 (407)
Q Consensus       185 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  223 (407)
                      +++..+.+|...|++|+|+|++ .+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            5678899999999999999998 8999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.74  E-value=1.6e-06  Score=71.72  Aligned_cols=167  Identities=10%  Similarity=-0.026  Sum_probs=110.3

Q ss_pred             CccccccCCCCCCCCCCCCcCc-eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc--c
Q 046899          165 SKNASKSGGNGDKPLESPSIGA-RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA--D  241 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~  241 (407)
                      ..++.|+..|...+|...+.+. .+....|...|+-+.-.-+...-+..++.|.++++.++.-+.....    .|..  .
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~----~h~~~~~  160 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA----VHNQNLT  160 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce----eeccccc
Confidence            3466678888999998875543 3333334443322211111112355677889999998876552112    2322  3


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +.++.+++ ++.++++.+....|-.|.+....    ...+. .....++.-.+..|+.... .||++..||++.|||++.
T Consensus       161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s----ey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES----EYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             eeeeEEcC-CCceEEEecCCCcceEEEeCCcc----ceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecc
Confidence            78999999 99999999999999999987643    23333 2333455667889998777 679999999999999997


Q ss_pred             CCccccc-----ccCCCcccCCCCcC
Q 046899          321 IGEKQDY-----GELKYPIIHPAYSS  341 (407)
Q Consensus       321 ~~~~~~~-----~~~~~~v~~~~~s~  341 (407)
                      ...+...     +.|.+.+..+.||+
T Consensus       235 ~~tpm~~~sstrp~hnGa~R~c~Fsl  260 (344)
T KOG4532|consen  235 MATPMAEISSTRPHHNGAFRVCRFSL  260 (344)
T ss_pred             cccchhhhcccCCCCCCceEEEEecC
Confidence            6554332     34666666666664

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.69  E-value=1e-05  Score=82.25  Aligned_cols=248  Identities=14%  Similarity=0.174  Sum_probs=134.0

Q ss_pred             CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      ..++++++++   +..+..+|.+-++   .++.+......+....  -...|.+++|+| |+++||..+.+++|.+-+-.
T Consensus        77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~---~~~~~~~~~~~E~VG~--vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~  150 (928)
T PF04762_consen   77 KIVSFQYLADSESLCIALASGDIILV---REDPDPDEDEIEIVGS--VDSGILAASWSP-DEELLALVTGEGNLLLMTRD  150 (928)
T ss_pred             cEEEEEeccCCCcEEEEECCceEEEE---EccCCCCCceeEEEEE--EcCcEEEEEECC-CcCEEEEEeCCCEEEEEecc
Confidence            3557777775   2233334434333   2233334444555553  478999999999 88899999989999887533


Q ss_pred             CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeec
Q 046899          115 AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGH  193 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~  193 (407)
                      - ..+.+..-+...    -|.-+.-++.-+.++..++....+.++.                ..-+... ......+. +
T Consensus       151 f-d~i~E~~l~~~~----~~~~~~VsVGWGkKeTQF~Gs~gK~aa~----------------~~~~p~~~~~d~~~~s-~  208 (928)
T PF04762_consen  151 F-DPISEVPLDSDD----FGESKHVSVGWGKKETQFHGSAGKAAAR----------------QLRDPTVPKVDEGKLS-W  208 (928)
T ss_pred             c-eEEEEeecCccc----cCCCceeeeccCcccCccCcchhhhhhh----------------hccCCCCCccccCccc-c
Confidence            2 222111111110    0111111222222222222111111000                0000000 00112222 4


Q ss_pred             ccCEEEEEECCCCCcEEEEEeC---C---CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC---CCcE
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGD---D---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA---DNSI  264 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~---dg~i  264 (407)
                      ...-..|+|-.|| .+||+.+-   .   ..+++|+-+ +.  .......-.+--.+++|-| .|+++|+...   ...|
T Consensus       209 dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  209 DDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDV  283 (928)
T ss_pred             CCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEE
Confidence            4456789999999 78888774   2   579999854 55  3333333333345789999 8999998764   3467


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      .+|..+-...   ++-...+......|..++|++++. +||..-.|. |.+|-..+..-
T Consensus       284 vFfErNGLrh---geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  284 VFFERNGLRH---GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             EEEecCCcEe---eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEE
Confidence            7776553211   111111223456899999999999 666766554 99999888653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.69  E-value=8.3e-08  Score=80.73  Aligned_cols=174  Identities=15%  Similarity=0.187  Sum_probs=107.7

Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc-eeeeccc-----CcceEEEEecCCCCCEEEEEeCCCcE
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA-VKVEKAH-----NADIHCVDWNPHDVNLILTGSADNSI  264 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~-----~~~v~~l~~~~~~~~~l~tg~~dg~i  264 (407)
                      ..|.-.|++|.|+.+. ..+++ +.|-+|.+|++.-..... +.....|     ..-|++..|+|...+.+.-.+..|.|
T Consensus       169 NaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         169 NAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             ccceeEeeeeeecCch-heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence            3588889999999987 45555 468899999987654211 2222333     34578999999878888888999999


Q ss_pred             EEEeCCCCCC-CCCCCcee----------eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc-cccccCCC
Q 046899          265 HMFDRRKLTS-DGVGSPIH----------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-QDYGELKY  332 (407)
Q Consensus       265 ~vwd~~~~~~-~~~~~~~~----------~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~-~~~~~~~~  332 (407)
                      ++-|+|...- +. ...+.          -+.+-...|..+.|+++|++++ +- .-.+|++||++..+.. .+++-|..
T Consensus       247 kl~DlRq~alcdn-~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sR-dyltvkiwDvnm~k~pikTi~~h~~  323 (460)
T COG5170         247 KLNDLRQSALCDN-SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SR-DYLTVKIWDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             EehhhhhhhhccC-chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Ee-ccceEEEEecccccCCceeechHHH
Confidence            9999994210 00 11111          1122345799999999999774 44 3578999999975543 44433221


Q ss_pred             c---ccCCCCcCcchhccccceee--eeEeeCccceeeeEEEeeeEEEee
Q 046899          333 P---IIHPAYSSDMLDIETKLLTS--IGMHLIHGRLLVCLTMVKVLEIWR  377 (407)
Q Consensus       333 ~---v~~~~~s~d~~~~~~~~~~~--~~~~~~~~~~i~~~~~d~~i~iwd  377 (407)
                      -   +..+-        ....+..  -..++|....+++|+......||-
T Consensus       324 l~~~l~d~Y--------EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         324 LMDELNDVY--------ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHHHHHhhh--------hccceeeeEEEEecCCcccccccccccceeeec
Confidence            1   00000        0111211  134555566777777766555554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.68  E-value=1.1e-06  Score=81.37  Aligned_cols=260  Identities=16%  Similarity=0.098  Sum_probs=144.8

Q ss_pred             CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCC--CC----------CCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADS--HP----------DLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~--~~----------~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      +..+.+++.+|.|..+|..+++.+-........  .+          ..++.+..+|..++................-..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~  144 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVA  144 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEE
Confidence            346777777888888888877654322211110  01          116777777776654432222211111100011


Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeecccCEE-----EEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVE-----DVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~-----~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                      +..+..+..++.+..+|..+++.+-.+......+.     +....  + ..++.+..++.+..+|.++++  ........
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~--~~W~~~~~  219 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQ--PLWEQRVA  219 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCC--Eeeeeccc
Confidence            23455567788899999988887665543222111     11111  2 357778888999999999887  23221110


Q ss_pred             -Cc---c---eEEEEecC-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          239 -NA---D---IHCVDWNP-HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       239 -~~---~---v~~l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                       ..   .   +..+.-+| ..+..+++++.+|.++.||.++      ++.+..... . .......  .+.+++ .++.|
T Consensus       220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t------G~~~W~~~~-~-~~~~p~~--~~~~vy-v~~~~  288 (377)
T TIGR03300       220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS------GRVLWKRDA-S-SYQGPAV--DDNRLY-VTDAD  288 (377)
T ss_pred             cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC------CcEEEeecc-C-CccCceE--eCCEEE-EECCC
Confidence             00   0   00011111 0235677788899999999988      777665542 1 1122222  344465 66789


Q ss_pred             CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899          311 GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL  390 (407)
Q Consensus       311 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~  390 (407)
                      |.+..+|..+++.+-........   ..-+|-             .   .++.|+.++.+|.|+++|..      +++.+
T Consensus       289 G~l~~~d~~tG~~~W~~~~~~~~---~~ssp~-------------i---~g~~l~~~~~~G~l~~~d~~------tG~~~  343 (377)
T TIGR03300       289 GVVVALDRRSGSELWKNDELKYR---QLTAPA-------------V---VGGYLVVGDFEGYLHWLSRE------DGSFV  343 (377)
T ss_pred             CeEEEEECCCCcEEEccccccCC---ccccCE-------------E---ECCEEEEEeCCCEEEEEECC------CCCEE
Confidence            99999999987765443221111   111111             1   15688889999999999987      56665


Q ss_pred             HHHhhc
Q 046899          391 AELDKF  396 (407)
Q Consensus       391 ~~~~~h  396 (407)
                      .++..+
T Consensus       344 ~~~~~~  349 (377)
T TIGR03300       344 ARLKTD  349 (377)
T ss_pred             EEEEcC
Confidence            554433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.68  E-value=1.2e-05  Score=74.93  Aligned_cols=133  Identities=15%  Similarity=0.011  Sum_probs=78.9

Q ss_pred             cCEEEEEECCCCCcEEEEEeCC--CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCC--cEEEEeC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDD--SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADN--SIHMFDR  269 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg--~i~vwd~  269 (407)
                      +......|+|+|..++++.+.+  ..|.++|+..+.   ...+..+........|+| |++.|+..+ ..|  .|.+.|+
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl  308 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKL  308 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEEC
Confidence            3445667999996565565544  457777887665   233333333334568999 777665554 334  5777777


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--------CeEEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GILNIWDHEKIGEKQDYGELKYPIIHPAYSS  341 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~  341 (407)
                      ..      ++..+ +......  ...|+|+|++|+.+....        ..|.+.|+..+.. +.+... .....+.|||
T Consensus       309 ~~------g~~~r-lt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SP  377 (419)
T PRK04043        309 NS------GSVEQ-VVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSS  377 (419)
T ss_pred             CC------CCeEe-CccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECC
Confidence            65      33322 2211111  248999999886665543        3688889877543 333332 2233577888


Q ss_pred             c
Q 046899          342 D  342 (407)
Q Consensus       342 d  342 (407)
                      |
T Consensus       378 D  378 (419)
T PRK04043        378 D  378 (419)
T ss_pred             C
Confidence            8

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.68  E-value=1.2e-07  Score=77.80  Aligned_cols=146  Identities=16%  Similarity=0.181  Sum_probs=96.9

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEe-----CCCcEEEEeCCCCCCCCCCCce
Q 046899          208 QEFCSVGDDSCLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGS-----ADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~-----~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                      +-++++..||.+.+++.+.-.. ...... .|.+ -.+.+... .++.+.++.     .-+..+.|+++..+     ..+
T Consensus       102 t~V~~~~~dg~~~v~s~~~~~~-~~~~i~~~~~~-~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~-----t~~  173 (319)
T KOG4714|consen  102 NRVCIGYADGSLAVFSTDKDLA-LMSRIPSIHSG-SASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIK-----TLI  173 (319)
T ss_pred             CceEecCCCceEEEEechHHHh-hhhhccccccc-ccccceee-cccEEecCCcceEeeccceeeecccccc-----ccc
Confidence            5689999999999999876321 111111 1211 11222333 344444432     22344556655421     111


Q ss_pred             eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc-cccccCCCcccCCCCcCcchhccccceeeeeEeeCc
Q 046899          282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH  360 (407)
Q Consensus       282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~  360 (407)
                      ...+. ...|++++-+|...+++++|+.||.+.+||.++...+ ..+..|+.+++.+-|.|..                 
T Consensus       174 ~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~-----------------  235 (319)
T KOG4714|consen  174 PSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN-----------------  235 (319)
T ss_pred             ccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC-----------------
Confidence            11122 2349999999999999999999999999999987555 3456799999999998873                 


Q ss_pred             cceeeeEEEeeeEEEeecc
Q 046899          361 GRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       361 ~~~i~~~~~d~~i~iwd~~  379 (407)
                      .+.+++.+.||.+--||-+
T Consensus       236 p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  236 PEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             chheeEecCCCcEEEEcCC
Confidence            7789999999999999987

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.67  E-value=5.6e-06  Score=85.61  Aligned_cols=119  Identities=11%  Similarity=0.136  Sum_probs=84.9

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-----------eecc--------cCcceEEEEecCCCCCEEE
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-----------VEKA--------HNADIHCVDWNPHDVNLIL  256 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------~~~~--------~~~~v~~l~~~~~~~~~l~  256 (407)
                      ....|+++|++..++++-+.++.|++||+.++......           .+-.        .-....++++++ ++++++
T Consensus       741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYV  819 (1057)
T PLN02919        741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYV  819 (1057)
T ss_pred             CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEE
Confidence            35679999998557778888899999999875411000           0000        011235889999 888888


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCCceeeecC--------------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899          257 TGSADNSIHMFDRRKLTSDGVGSPIHKFEG--------------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG  322 (407)
Q Consensus       257 tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~  322 (407)
                      +-..++.|++||..+      +... ++.+              .-.....|+++++|+ ++++-+.++.|++||+.+.+
T Consensus       820 ADs~N~rIrviD~~t------g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        820 ADSYNHKIKKLDPAT------KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EECCCCEEEEEECCC------CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCc
Confidence            888899999999976      3332 2221              123568899999997 77788899999999998865


Q ss_pred             c
Q 046899          323 E  323 (407)
Q Consensus       323 ~  323 (407)
                      .
T Consensus       892 ~  892 (1057)
T PLN02919        892 A  892 (1057)
T ss_pred             c
Confidence            4

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.64  E-value=3.8e-06  Score=77.85  Aligned_cols=245  Identities=16%  Similarity=0.044  Sum_probs=138.2

Q ss_pred             CeEEEEeeCCCcEEEEeCcCCCCcccccCcC--CCCC----------CCCCcEEEEeccccccccccCCCCCcc-----c
Q 046899           96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAA--DSHP----------DLDQSVVLWSIQDHVSALAAEPGSAKS-----T  158 (407)
Q Consensus        96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~----------~~d~~i~~w~~~~~~~~~~~~~~~~~~-----~  158 (407)
                      +..++.++.+|.+..+|..+++.+-......  ...+          ..++.+..+|..++.............     .
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~  184 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA  184 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCC
Confidence            4567777888999999998876543222111  0111          117788888887664432221111000     0


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc----C---EEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED----T---VEDVQFCP--SSAQEFCSVGDDSCLILWDARSGST  229 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~---v~~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~  229 (407)
                      .....+..+..+..++.+..+|..+++.+-.......    .   ...+.-.|  .+ ..++.++.+|.+..+|.++++ 
T Consensus       185 sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~-  262 (377)
T TIGR03300       185 SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGR-  262 (377)
T ss_pred             CCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCc-
Confidence            0000112345566777888888877765433221000    0   00011111  13 467777889999999999887 


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCCEEEEee
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~ll~s~~  308 (407)
                       ...... ... ......   .+..+++++.+|.+..+|..+      ++.+...... .....+...  .+..+ .+++
T Consensus       263 -~~W~~~-~~~-~~~p~~---~~~~vyv~~~~G~l~~~d~~t------G~~~W~~~~~~~~~~ssp~i--~g~~l-~~~~  327 (377)
T TIGR03300       263 -VLWKRD-ASS-YQGPAV---DDNRLYVTDADGVVVALDRRS------GSELWKNDELKYRQLTAPAV--VGGYL-VVGD  327 (377)
T ss_pred             -EEEeec-cCC-ccCceE---eCCEEEEECCCCeEEEEECCC------CcEEEccccccCCccccCEE--ECCEE-EEEe
Confidence             333332 111 112222   346777888899999999988      7776555321 112222222  24445 4888


Q ss_pred             CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          309 EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       309 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                      .+|.|.++|..+++.+.++..+..++.....   +             .   ++.|+.++.||.|+.+
T Consensus       328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~---~-------------~---~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       328 FEGYLHWLSREDGSFVARLKTDGSGIASPPV---V-------------V---GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCccccCCE---E-------------E---CCEEEEEeCCceEEEe
Confidence            9999999999998888777655443222211   1             1   4568888889988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.7e-06  Score=81.49  Aligned_cols=316  Identities=13%  Similarity=0.104  Sum_probs=170.2

Q ss_pred             eCCCceEEEEEeCC-----------CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-----------------
Q 046899           81 IHPGEVNRIRELPQ-----------NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-----------------  132 (407)
Q Consensus        81 ~h~~~v~~l~~~~~-----------~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----------------  132 (407)
                      .|+..|+.++|.|.           ..-+||++.-.|.|.+||+..+..+..+..+...+.+.                 
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh  132 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH  132 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec
Confidence            48899999999872           12378888889999999999887776666666555444                 


Q ss_pred             -CCcEEEEeccccccccccCCCCC--cccccCCCCCc-cccccCCCCCCCCCC-------CCcCceeeEeeccc------
Q 046899          133 -DQSVVLWSIQDHVSALAAEPGSA--KSTASGGANSK-NASKSGGNGDKPLES-------PSIGARGKYLGHED------  195 (407)
Q Consensus       133 -d~~i~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~i~d~-------~~~~~~~~~~~~~~------  195 (407)
                       ..++.+|+..++...........  .......++.. +...+..|.+.+-+.       -.++..+.-..|.+      
T Consensus       133 ~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ler  212 (1062)
T KOG1912|consen  133 GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLER  212 (1062)
T ss_pred             CCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhh
Confidence             56889998888765444333222  22222333322 222222222222111       01112222112211      


Q ss_pred             -------------------CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC-CCCEE
Q 046899          196 -------------------TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLI  255 (407)
Q Consensus       196 -------------------~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l  255 (407)
                                         ....++|+|.-.+.+... ....+.++|++-..  +.....--.+.+.-+.|-|. ....|
T Consensus       213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~--~l~vvpier~~akfv~vlP~~~rd~L  289 (1062)
T KOG1912|consen  213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYEC--CLAVVPIERGGAKFVDVLPDPRRDAL  289 (1062)
T ss_pred             hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhc--eeEEEEeccCCcceeEeccCCCcceE
Confidence                               011356788764544443 46789999998766  34433333445556777661 34578


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCC----------CCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          256 LTGSADNSIHMFDRRKLTSDGV----------GSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       256 ~tg~~dg~i~vwd~~~~~~~~~----------~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                      +++..||.+.+|-.+.....-.          +.....+.. .+-.+......|..+..++.--.+|...+|.+++++..
T Consensus       290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence            8999999999997655211000          011111111 01122233344553333344445788999999975544


Q ss_pred             cccccC-CCcccCCCCcCcchhcccccee-----------------------eeeEeeCcc-------ceeeeEEEeeeE
Q 046899          325 QDYGEL-KYPIIHPAYSSDMLDIETKLLT-----------------------SIGMHLIHG-------RLLVCLTMVKVL  373 (407)
Q Consensus       325 ~~~~~~-~~~v~~~~~s~d~~~~~~~~~~-----------------------~~~~~~~~~-------~~i~~~~~d~~i  373 (407)
                      ...... ..-+..+.|.-+-..+-...+.                       ++....+-+       ..++.|...|+|
T Consensus       370 ~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV  449 (1062)
T KOG1912|consen  370 LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV  449 (1062)
T ss_pred             cccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence            332211 1111111221110000000000                       000011111       135588889999


Q ss_pred             EEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899          374 EIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~  405 (407)
                      .|+|+.      ++..-+.+..|...|.++.|
T Consensus       450 ~vvdvs------t~~v~~~fsvht~~VkgleW  475 (1062)
T KOG1912|consen  450 DVVDVS------TNAVAASFSVHTSLVKGLEW  475 (1062)
T ss_pred             EEEEec------chhhhhhhcccccceeeeee
Confidence            999999      89999999999999999877

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.63  E-value=1e-05  Score=72.29  Aligned_cols=138  Identities=14%  Similarity=0.174  Sum_probs=104.4

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCC-cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDS-CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      ++.+.|.-..+.-+. .-++.|..|| .+-++|.++++   .+.+...-+.|.++..+| +|..++.+.....+-+.|+.
T Consensus       357 ~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEec
Confidence            455567777776666 4688899998 99999999887   455566778899999999 99999999999999999999


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC----CeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED----GILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      +      +.+...-+...+-|+.++|||+++++ |-+--+    ..|+++|+..++....- ....--.+.+|.||
T Consensus       432 n------gnv~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d  499 (668)
T COG4946         432 N------GNVRLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPD  499 (668)
T ss_pred             C------CCeeEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCC
Confidence            8      66655555567889999999999975 555444    57999999986554322 22222236777777

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.1e-06  Score=76.76  Aligned_cols=95  Identities=17%  Similarity=0.242  Sum_probs=79.3

Q ss_pred             CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899          176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI  255 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  255 (407)
                      ++.++..+.+..+.+..+...|..++|+|...-++..++.+.+|+|.|+++..  ....+..+ ..+++++|+.++.+++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCccee
Confidence            44445555566666777888999999999874589999999999999999887  56666666 8899999999788999


Q ss_pred             EEEeCCCcEEEEeCCCCC
Q 046899          256 LTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       256 ~tg~~dg~i~vwd~~~~~  273 (407)
                      +.|...|.|.|||+|.+.
T Consensus       252 YaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EEeccCceEEEEEccCCC
Confidence            999999999999999865

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=1.2e-06  Score=82.59  Aligned_cols=263  Identities=15%  Similarity=0.100  Sum_probs=177.1

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      |...-+++.|+| .| +||-|+. ..|.|-|..+-+.++.+..|...+     +..-|-.......+..         ..
T Consensus        14 ~~sN~~A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V-----~~VrWap~~~p~~llS---------~~   76 (1062)
T KOG1912|consen   14 SRSNRNAADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAV-----TSVRWAPAPSPRDLLS---------PS   76 (1062)
T ss_pred             CcccccccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccccCccce-----eEEEeccCCCchhccC---------cc
Confidence            444467888888 55 7888876 489999999888888887776532     3333433221111100         01


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC---CCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS---SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                      ..+-.++++...|.|.+||...+..+..+..|..++..++|-+.   ....|++-.....|.+|+..+|+  ........
T Consensus        77 ~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys  154 (1062)
T KOG1912|consen   77 SSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYS  154 (1062)
T ss_pred             ccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--eeeccccC
Confidence            23345677888899999999999988899999999999999763   22567777778899999999999  56666666


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC-CCCCCceeeecCCCC-------------------------CEE
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS-DGVGSPIHKFEGHSA-------------------------AVL  292 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~h~~-------------------------~v~  292 (407)
                      .....|+.++|.+.+.+..-+..|.+.+-+.-..++ ++.++..+.-..|.+                         ...
T Consensus       155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a  234 (1062)
T KOG1912|consen  155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA  234 (1062)
T ss_pred             CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence            677888999999999998888899888877644332 111222222222222                         122


Q ss_pred             EEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899          293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV  372 (407)
Q Consensus       293 ~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  372 (407)
                      .++|+|.-+.++ -...-..+.++|++-...+....-..+.+.=+.+-||                +..+.+.++-.+|.
T Consensus       235 ~faf~p~~rn~l-fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~----------------~~rd~LfclH~nG~  297 (1062)
T KOG1912|consen  235 QFAFSPHWRNIL-FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD----------------PRRDALFCLHSNGR  297 (1062)
T ss_pred             hhhcChhhhceE-EEEeccceEEEcchhhceeEEEEeccCCcceeEeccC----------------CCcceEEEEecCCe
Confidence            356788766554 3344678999999987777666554443222333333                33667888889999


Q ss_pred             EEEeeccc
Q 046899          373 LEIWRMID  380 (407)
Q Consensus       373 i~iwd~~~  380 (407)
                      +.||--.+
T Consensus       298 ltirvrk~  305 (1062)
T KOG1912|consen  298 LTIRVRKE  305 (1062)
T ss_pred             EEEEEeec
Confidence            99997653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.59  E-value=7.3e-06  Score=74.72  Aligned_cols=219  Identities=12%  Similarity=0.148  Sum_probs=122.7

Q ss_pred             CCCceEEEEEeCCCCeEEEEee-CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccc----ccccccCCCCCc
Q 046899           82 HPGEVNRIRELPQNSKIVATHT-DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDH----VSALAAEPGSAK  156 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~----~~~~~~~~~~~~  156 (407)
                      .......++++| ++++|+++. .+|.|.++++.....+...             ..++.....    .+....++..+.
T Consensus        85 ~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~-------------~~~~~~~g~g~~~~rq~~~h~H~v~  150 (345)
T PF10282_consen   85 GGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEV-------------VQTVRHEGSGPNPDRQEGPHPHQVV  150 (345)
T ss_dssp             SSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEE-------------EEEEESEEEESSTTTTSSTCEEEEE
T ss_pred             CCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCccccee-------------eeecccCCCCCcccccccccceeEE
Confidence            445566788888 666666665 5899999999874222111             001111000    001111222222


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcC--c--eeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CCCC
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIG--A--RGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--SGST  229 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~--~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~  229 (407)
                      +.+.++.  .++.......|.+++.....  .  ...+. .....-..+.|+|++...+++.-.++.|.++++.  ++..
T Consensus       151 ~~pdg~~--v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~  228 (345)
T PF10282_consen  151 FSPDGRF--VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL  228 (345)
T ss_dssp             E-TTSSE--EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             ECCCCCE--EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence            2222221  12222233445555554433  2  11222 2345678999999995566666778999999998  3321


Q ss_pred             Cceeeecc----c--CcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899          230 PAVKVEKA----H--NADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS  302 (407)
Q Consensus       230 ~~~~~~~~----~--~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  302 (407)
                      ........    .  ......|.++| ++++|+++. ..+.|.+|++....  +..+.+..+.......+.++++|+|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~--g~l~~~~~~~~~G~~Pr~~~~s~~g~~  305 (345)
T PF10282_consen  229 TEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPAT--GTLTLVQTVPTGGKFPRHFAFSPDGRY  305 (345)
T ss_dssp             EEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTT--TTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred             eEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCC--CceEEEEEEeCCCCCccEEEEeCCCCE
Confidence            11111111    1  12567899999 888877765 46789999995421  002334444434455899999999999


Q ss_pred             EEEEeeCCCeEEEEeCC
Q 046899          303 VFGSSAEDGILNIWDHE  319 (407)
Q Consensus       303 ll~s~~~d~~i~vwd~~  319 (407)
                      |+++...++.|.+|++.
T Consensus       306 l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  306 LYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEETTTTEEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEe
Confidence            98888888999999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.55  E-value=6.8e-07  Score=85.63  Aligned_cols=180  Identities=13%  Similarity=0.111  Sum_probs=132.5

Q ss_pred             ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV  245 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l  245 (407)
                      .++.|+....+..+|..+.+..+...-....|.-++.+  + +++.+|...|+|.+-|.++.+  .+.++.+|.+.|..+
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDF  223 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCc--eeeeeeccccceeee
Confidence            34556666677778888877776665545456666654  3 689999999999999999888  788999999999877


Q ss_pred             EecCCCCCEEEEEeC---------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          246 DWNPHDVNLILTGSA---------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       246 ~~~~~~~~~l~tg~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      +.   .|+.|+++|.         |..|+|||+|+      .+.+.-+.-+.++ .-++|+|.-...+|.++..|...+-
T Consensus       224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRm------mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRM------MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             ec---cCCeEEEeecccccccccccchhhhhhhhh------hhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence            76   5688888875         44589999999      5666666655555 6788999876667888889999999


Q ss_pred             eCCCCCcc----cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          317 DHEKIGEK----QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       317 d~~~~~~~----~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      |.......    ..+...+..+..+++|++                  ++.++-|..+|.|.+|.-
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn------------------~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSN------------------GDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCC------------------CceEEEecccCcEeeecC
Confidence            94433322    112222333555666665                  888999999999999973

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=7.3e-07  Score=78.81  Aligned_cols=218  Identities=13%  Similarity=0.102  Sum_probs=146.8

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA  159 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  159 (407)
                      .-|.+.|+.+...  -.+++.+++.||.++.|.-....-                                         
T Consensus         6 ymhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isG-----------------------------------------   42 (558)
T KOG0882|consen    6 YMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISG-----------------------------------------   42 (558)
T ss_pred             hcccceeeeEeee--hhheEEeeecchhhhhcCCCCccc-----------------------------------------
Confidence            3588888887533  567999999999999997542110                                         


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCceeeeccc
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                                              -+.+..+..|...|.+++.+-++ .+++|.+. |..++++|+.+-.......+..-
T Consensus        43 ------------------------vEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l   97 (558)
T KOG0882|consen   43 ------------------------VEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDL   97 (558)
T ss_pred             ------------------------eeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccC
Confidence                                    01223345688888999999988 88999787 99999999987663222222233


Q ss_pred             CcceEEEEecCCCCC-EEEEE-eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          239 NADIHCVDWNPHDVN-LILTG-SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~-~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      ++.+. ...++.+.. .++.+ -.+|.+.++|-+...    .+....-.-|..+|.++.+.+-+... ++....|.|.-|
T Consensus        98 Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~----~q~~~fkklH~sPV~~i~y~qa~Ds~-vSiD~~gmVEyW  171 (558)
T KOG0882|consen   98 PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDF----CQDGYFKKLHFSPVKKIRYNQAGDSA-VSIDISGMVEYW  171 (558)
T ss_pred             CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCc----CccceecccccCceEEEEeeccccce-eeccccceeEee
Confidence            33322 222331221 33333 457899999988732    24444555699999999999999865 588888999999


Q ss_pred             eCCC-CCcccc--------------cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccc
Q 046899          317 DHEK-IGEKQD--------------YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDL  381 (407)
Q Consensus       317 d~~~-~~~~~~--------------~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~  381 (407)
                      .... .+.+..              +.......+++.|||+                  +..+.+.+.|-+||++++.  
T Consensus       172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~------------------g~qistl~~DrkVR~F~~K--  231 (558)
T KOG0882|consen  172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD------------------GAQISTLNPDRKVRGFVFK--  231 (558)
T ss_pred             cCCCcccCccccccccccccchhhcccccccCccceEEccc------------------cCcccccCcccEEEEEEec--
Confidence            9873 222221              1122333455556555                  8889988899999999998  


Q ss_pred             ccCChHHHHHHHhh
Q 046899          382 IYRPEEEVLAELDK  395 (407)
Q Consensus       382 ~~~~~~~~~~~~~~  395 (407)
                          ++.+++.+..
T Consensus       232 ----tGklvqeiDE  241 (558)
T KOG0882|consen  232 ----TGKLVQEIDE  241 (558)
T ss_pred             ----cchhhhhhhc
Confidence                7777776653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.50  E-value=4.4e-05  Score=66.12  Aligned_cols=214  Identities=10%  Similarity=0.031  Sum_probs=123.6

Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcc
Q 046899           88 RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKN  167 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (407)
                      ++.|.+.++.++++--..+.|..|+..++...                  ++.+...        .+..+.   ..+..+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~------------------~~~~~~~--------~G~~~~---~~~g~l   54 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE------------------VIDLPGP--------NGMAFD---RPDGRL   54 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE------------------EEESSSE--------EEEEEE---CTTSEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE------------------EEecCCC--------ceEEEE---ccCCEE
Confidence            56788778888888888899999998765322                  2222110        000000   000111


Q ss_pred             ccccCCCCCCCCCCCCcCceeeEee-----cccCEEEEEECCCCCcEEEEEeCC--------CcEEEEEcCCCCCCceee
Q 046899          168 ASKSGGNGDKPLESPSIGARGKYLG-----HEDTVEDVQFCPSSAQEFCSVGDD--------SCLILWDARSGSTPAVKV  234 (407)
Q Consensus       168 ~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~  234 (407)
                      ..+ ..+.+.++|..+++.......     .....+.+++.|+| ++.++....        |.|..++.. ++   ...
T Consensus        55 ~v~-~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~  128 (246)
T PF08450_consen   55 YVA-DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTV  128 (246)
T ss_dssp             EEE-ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEE
T ss_pred             EEE-EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce---EEE
Confidence            111 223334446555544333332     34577899999999 677766543        456677766 33   223


Q ss_pred             ecccCcceEEEEecCCCCCEEE-EEeCCCcEEEEeCCCCCC-CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899          235 EKAHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRRKLTS-DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI  312 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~-tg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~  312 (407)
                      ....-...+.|+|+| +++.|+ +-+..+.|..|++..... ....+....+....+..-.+++..+|. |+++....+.
T Consensus       129 ~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~  206 (246)
T PF08450_consen  129 VADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGR  206 (246)
T ss_dssp             EEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTE
T ss_pred             EecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCE
Confidence            333345578999999 777665 566778999999875220 000011222333233478999999998 6667777899


Q ss_pred             EEEEeCCCCCcccccccCCCcccCCCC
Q 046899          313 LNIWDHEKIGEKQDYGELKYPIIHPAY  339 (407)
Q Consensus       313 i~vwd~~~~~~~~~~~~~~~~v~~~~~  339 (407)
                      |.++|.+ ++.+..+.-....+++++|
T Consensus       207 I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  207 IVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             EEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             EEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            9999988 6766666544345556665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=2.2e-06  Score=77.83  Aligned_cols=200  Identities=16%  Similarity=0.167  Sum_probs=130.1

Q ss_pred             cccccCccceEEEEeecccCcccCCcce-eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFV-KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA  125 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  125 (407)
                      .+.+++.|.++++|....  +.+..... -....-.|+.+|+++.|.. +-++++++  ||-|.+||.--+..+..... 
T Consensus       749 SFiSASkDKTVKLWSik~--EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlWDPFigr~Laq~~d-  822 (1034)
T KOG4190|consen  749 SFISASKDKTVKLWSIKP--EGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLWDPFIGRLLAQMED-  822 (1034)
T ss_pred             ceeeccCCceEEEEEecc--ccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceeecccccchhHhhhc-
Confidence            477889999999995441  11111111 1233346999999999988 66677766  78899999765543332110 


Q ss_pred             CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC
Q 046899          126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS  205 (407)
Q Consensus       126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~  205 (407)
                                    +..                                                .+-.+.|.|+.- -+
T Consensus       823 --------------apk------------------------------------------------~~a~~~ikcl~n-v~  839 (1034)
T KOG4190|consen  823 --------------APK------------------------------------------------EGAGGNIKCLEN-VD  839 (1034)
T ss_pred             --------------Ccc------------------------------------------------cCCCceeEeccc-Cc
Confidence                          000                                                011223334321 12


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899          206 SAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH  282 (407)
Q Consensus       206 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  282 (407)
                      ..-+++.++...+|+++|.|.....+....-   +...-+.+++..+ .|+.++.|-..|.|.+.|.|+      ++.+.
T Consensus       840 ~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~------G~vIN  912 (1034)
T KOG4190|consen  840 RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN------GKVIN  912 (1034)
T ss_pred             chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC------Cceec
Confidence            3234444478899999999988743333322   3345688999999 999999999999999999999      88888


Q ss_pred             eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE-EeCCCCCcc
Q 046899          283 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI-WDHEKIGEK  324 (407)
Q Consensus       283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v-wd~~~~~~~  324 (407)
                      .++..+-....++- |..+.+ +....|.++.+ |....+...
T Consensus       913 swrpmecdllqlaa-psdq~L-~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  913 SWRPMECDLLQLAA-PSDQAL-AQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             cCCcccchhhhhcC-chhHHH-HhhcccceeEeeehhcCCeee
Confidence            88765555555543 444434 67778999998 876654433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=6.3e-06  Score=78.24  Aligned_cols=149  Identities=9%  Similarity=0.162  Sum_probs=102.7

Q ss_pred             ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV  245 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l  245 (407)
                      .++.|+..|.+.+.+.+..-  .+...|...      .-+| .++++|+.||+|.|..+-+.+.  ... .....++.++
T Consensus        51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~--~~~-~df~rpiksi  118 (846)
T KOG2066|consen   51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDE--ITQ-YDFKRPIKSI  118 (846)
T ss_pred             eeeeccccceEEEEecCCcc--ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcc--cee-EecCCcceeE
Confidence            35667777777776654322  222233332      4456 8999999999999999988772  222 3457889999


Q ss_pred             EecCC----CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          246 DWNPH----DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       246 ~~~~~----~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      +++|+    ..+.+++|+.-| +.++.-+-...   ...+ .+..-.++|.++.|.  |. ++|-++.+| |+|||+...
T Consensus       119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---k~~v-~l~~~eG~I~~i~W~--g~-lIAWand~G-v~vyd~~~~  189 (846)
T KOG2066|consen  119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---KDSV-VLSEGEGPIHSIKWR--GN-LIAWANDDG-VKVYDTPTR  189 (846)
T ss_pred             EeccchhhhhhhheeecCcce-EEEehhhhhcC---ccce-eeecCccceEEEEec--Cc-EEEEecCCC-cEEEecccc
Confidence            99993    257899999999 77877655321   1222 455568899999995  44 567777666 999999998


Q ss_pred             CcccccccCCCccc
Q 046899          322 GEKQDYGELKYPII  335 (407)
Q Consensus       322 ~~~~~~~~~~~~v~  335 (407)
                      +.+..++.....+.
T Consensus       190 ~~l~~i~~p~~~~R  203 (846)
T KOG2066|consen  190 QRLTNIPPPSQSVR  203 (846)
T ss_pred             ceeeccCCCCCCCC
Confidence            88877766554433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.45  E-value=3.6e-07  Score=87.18  Aligned_cols=197  Identities=18%  Similarity=0.191  Sum_probs=132.7

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC----CCcEEEEeccccccccccCCCCCc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL----DQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      .|...-+|++|+. +.+.|+.|+..|.|+++++.++.....+.+|...+..+    ||...+-.-               
T Consensus      1099 d~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltss--------------- 1162 (1516)
T KOG1832|consen 1099 DETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSS--------------- 1162 (1516)
T ss_pred             ccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeec---------------
Confidence            5788899999998 88899999999999999999999888888887665433    444333211               


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee-
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-  234 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  234 (407)
                                   ..+.--..+|++.. +...+.+.    .-.++.|+..- ..-+.|.......+||+++...  ..+ 
T Consensus      1163 -------------s~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~--l~ty 1222 (1516)
T KOG1832|consen 1163 -------------SSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSP--LQTY 1222 (1516)
T ss_pred             -------------cccCchHHHhccccccCcccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcH--HHHh
Confidence                         11111234666643 33444443    34578888764 4445555667899999999873  222 


Q ss_pred             ec---ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          235 EK---AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       235 ~~---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      +.   +....-++..|+| +..+++   .||  .+||+|.      .+.++.|...+..+ .-.|||+|..++ .-+   
T Consensus      1223 lt~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~------~~aIh~FD~ft~~~-~G~FHP~g~eVI-INS--- 1285 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRI------PEAIHRFDQFTDYG-GGGFHPSGNEVI-INS--- 1285 (1516)
T ss_pred             cCcchhhhhhccccccCC-CcceEe---eCc--eeeeecc------HHHHhhhhhheecc-cccccCCCceEE-eec---
Confidence            21   2222337889999 666665   466  5899998      66777776544322 335999999775 433   


Q ss_pred             eEEEEeCCCCCcccccccCCC
Q 046899          312 ILNIWDHEKIGEKQDYGELKY  332 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~~~~~~~  332 (407)
                        .|||+++.+.+...+.-+.
T Consensus      1286 --EIwD~RTF~lLh~VP~Ldq 1304 (1516)
T KOG1832|consen 1286 --EIWDMRTFKLLHSVPSLDQ 1304 (1516)
T ss_pred             --hhhhhHHHHHHhcCccccc
Confidence              3899999998887765443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.44  E-value=4.1e-05  Score=66.40  Aligned_cols=166  Identities=9%  Similarity=0.141  Sum_probs=109.8

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCC--CCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-CcEE
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARS--GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-NSIH  265 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-g~i~  265 (407)
                      ...+..+-|+|+|++ +.|.++..   +|.|.-|.+..  +....+-.......+.+.+++++ ++++++++... |.|.
T Consensus        37 ~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~  114 (346)
T COG2706          37 AELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVS  114 (346)
T ss_pred             cccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEE
Confidence            355677889999998 66777655   47788887765  44212222222334447899999 88999888764 7999


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCC----------EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc---cCCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAA----------VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG---ELKY  332 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~----------v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~---~~~~  332 (407)
                      ++-++....   ...+.....|.+.          +....+.|++++|+++.=.-..|.+|++..++....-.   ..+.
T Consensus       115 v~p~~~dG~---l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~  191 (346)
T COG2706         115 VYPLQADGS---LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA  191 (346)
T ss_pred             EEEcccCCc---cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence            999977422   2222222235444          88999999999887555455679999999654432211   2334


Q ss_pred             cccCCCCcCcchhccccceeeeeEeeCccce-eeeEEEeeeEEEeeccc
Q 046899          333 PIIHPAYSSDMLDIETKLLTSIGMHLIHGRL-LVCLTMVKVLEIWRMID  380 (407)
Q Consensus       333 ~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~i~iwd~~~  380 (407)
                      .-..+.|.|+                  +.. .+..-++++|-+|..+.
T Consensus       192 GPRHi~FHpn------------------~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         192 GPRHIVFHPN------------------GKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             CcceEEEcCC------------------CcEEEEEeccCCEEEEEEEcC
Confidence            4567778777                  443 33667888999999874

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.44  E-value=1.1e-07  Score=87.53  Aligned_cols=195  Identities=13%  Similarity=0.175  Sum_probs=125.0

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEee----CCCcEEEEeCcCCCCcccc
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHT----DSPDVLIWDVEAQPNRHAV  122 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~----~dg~i~vwd~~~~~~~~~~  122 (407)
                      .++.|..+|.+-+..-.   ...+.   ......+|...+++++|++-+.+.||.|-    .|..+.|||+.++-.... 
T Consensus        72 IlavG~atG~I~l~s~r---~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk-  144 (783)
T KOG1008|consen   72 ILAVGSATGNISLLSVR---HPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK-  144 (783)
T ss_pred             hhhhccccCceEEeecC---Ccccc---cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc-
Confidence            46666777766665222   11111   12334468899999999998888888883    245566777665421100 


Q ss_pred             cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEE
Q 046899          123 LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQF  202 (407)
Q Consensus       123 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~  202 (407)
                                                    ..           ...++                     +-.....+++|
T Consensus       145 ------------------------------e~-----------~~fs~---------------------~~l~gqns~cw  162 (783)
T KOG1008|consen  145 ------------------------------ES-----------PLFSS---------------------STLDGQNSVCW  162 (783)
T ss_pred             ------------------------------cc-----------ccccc---------------------ccccCcccccc
Confidence                                          00           00000                     01223347888


Q ss_pred             CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEe-CCCCCCCCCCCce
Q 046899          203 CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFD-RRKLTSDGVGSPI  281 (407)
Q Consensus       203 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd-~~~~~~~~~~~~~  281 (407)
                      ..+. .++.+|.....++++|+|...   .....-.+..+..+..+|..++++++-. ||.|.+|| .++.     ..++
T Consensus       163 lrd~-klvlaGm~sr~~~ifdlRqs~---~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni-----enpl  232 (783)
T KOG1008|consen  163 LRDT-KLVLAGMTSRSVHIFDLRQSL---DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI-----ENPL  232 (783)
T ss_pred             ccCc-chhhcccccchhhhhhhhhhh---hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh-----ccHH
Confidence            8776 789999999999999999544   2222233445667788887788887765 99999999 5442     2444


Q ss_pred             eeecCCCC----CEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCC
Q 046899          282 HKFEGHSA----AVLCVQWSPDKSSVFGSSAED-GILNIWDHEK  320 (407)
Q Consensus       282 ~~~~~h~~----~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~  320 (407)
                      ..+...+.    .+..++|.|....++++...| ++|+++|+..
T Consensus       233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            44443222    499999999877777787765 7899999874

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.44  E-value=2.1e-06  Score=82.37  Aligned_cols=145  Identities=11%  Similarity=0.179  Sum_probs=110.3

Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCCCceeee
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---------DSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~  235 (407)
                      ..+.+|...|++.+-|.++.+.+.++..|++.|..+...  | ++|+++|.         |..|++||+|..+  .+..+
T Consensus       188 r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmr--al~PI  262 (1118)
T KOG1275|consen  188 RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMR--ALSPI  262 (1118)
T ss_pred             cEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhh--ccCCc
Confidence            457889999999999999999999999999999877654  5 78888875         6678999999877  34444


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      .-+.++ .-+.|.|.-...+++.+..|...+-|..+....  ..-+..+..-...+..+.+++++.. +|-|..+|.|.+
T Consensus       263 ~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~~a-lafgd~~g~v~~  338 (1118)
T KOG1275|consen  263 QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNGDA-LAFGDHEGHVNL  338 (1118)
T ss_pred             ccccCc-hhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecCCCce-EEEecccCcEee
Confidence            334333 567888866778899999999999994433210  1222333333456999999999995 589999999999


Q ss_pred             EeC
Q 046899          316 WDH  318 (407)
Q Consensus       316 wd~  318 (407)
                      |--
T Consensus       339 wa~  341 (1118)
T KOG1275|consen  339 WAD  341 (1118)
T ss_pred             ecC
Confidence            973

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.40  E-value=2.6e-05  Score=69.77  Aligned_cols=124  Identities=16%  Similarity=0.229  Sum_probs=89.8

Q ss_pred             cccCCC-CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEe
Q 046899          169 SKSGGN-GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDW  247 (407)
Q Consensus       169 ~~~~~~-~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  247 (407)
                      .+..|| .+-++|...++ +..+.+.-+.|.+++.+|+| ..++.+.....|.+.|+.++.  ....-+...+-|+.++|
T Consensus       376 igt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngn--v~~idkS~~~lItdf~~  451 (668)
T COG4946         376 IGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGN--VRLIDKSEYGLITDFDW  451 (668)
T ss_pred             EeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCC--eeEecccccceeEEEEE
Confidence            344444 45555555544 34445567889999999999 788888888899999999998  44444555678999999


Q ss_pred             cCCCCCEEEEEeCCC----cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899          248 NPHDVNLILTGSADN----SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF  304 (407)
Q Consensus       248 ~~~~~~~l~tg~~dg----~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll  304 (407)
                      +| +++++|-+--+|    .|+++|+..      ++. .......+.=.+-+|.|++++|.
T Consensus       452 ~~-nsr~iAYafP~gy~tq~Iklydm~~------~Ki-y~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         452 HP-NSRWIAYAFPEGYYTQSIKLYDMDG------GKI-YDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             cC-CceeEEEecCcceeeeeEEEEecCC------CeE-EEecCCcccccCcccCCCCcEEE
Confidence            99 999999887666    689999987      443 33333333445667889998874

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=2e-05  Score=69.09  Aligned_cols=81  Identities=10%  Similarity=0.093  Sum_probs=63.3

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      ..+|...|..|+|+|.+.-++..++-+..|+|.|+.+..+..                                      
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs--------------------------------------  230 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS--------------------------------------  230 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeee--------------------------------------
Confidence            345788999999999666689999999999999998764332                                      


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS  228 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  228 (407)
                                                    .+..+ ..+++++|.-+..+++..|-..|.|.+||+|..+
T Consensus       231 ------------------------------sy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  231 ------------------------------SYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ------------------------------heecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence                                          22334 5678888888777788888888888888888765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=4.9e-06  Score=77.89  Aligned_cols=265  Identities=13%  Similarity=0.186  Sum_probs=163.6

Q ss_pred             EEEee---cccccCccceEEEEeec-ccCccc------CCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899           42 CRWGP---QLEQATYKNRQRLYLSE-QFNEEA------RSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW  111 (407)
Q Consensus        42 ~~~~~---~~~~~~~~~~~~i~~~~-~~~~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  111 (407)
                      ..|..   .++.|+.|+..++.-.. +-.+.+      .......+.+-||.+.|.-+.|+. +.+.|.|...+|.|.||
T Consensus        20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVW   98 (1189)
T KOG2041|consen   20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVW   98 (1189)
T ss_pred             EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCCceEEEE
Confidence            46654   47888888877776322 111111      111222345568999999999998 66778899999999999


Q ss_pred             eCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe
Q 046899          112 DVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL  191 (407)
Q Consensus       112 d~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~  191 (407)
                      =+-.+.-......                                                                  .
T Consensus        99 mlykgsW~EEMiN------------------------------------------------------------------n  112 (1189)
T KOG2041|consen   99 MLYKGSWCEEMIN------------------------------------------------------------------N  112 (1189)
T ss_pred             eeecccHHHHHhh------------------------------------------------------------------C
Confidence            8876643322110                                                                  0


Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                      -...-|.+++|+.+| ..++..-.||.|.+=.+.-.+   +.-..--......+.|++ |...++.+-..|.+.+||.+.
T Consensus       113 RnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNR---IwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  113 RNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNR---IWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             cCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccce---ecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccc
Confidence            123567899999999 778888889998887776433   211111122344789999 888888888899999999764


Q ss_pred             CCCCCC-CCceee----ecCCCCCEEEEEEc--------CCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCC
Q 046899          272 LTSDGV-GSPIHK----FEGHSAAVLCVQWS--------PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPA  338 (407)
Q Consensus       272 ~~~~~~-~~~~~~----~~~h~~~v~~v~~~--------~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  338 (407)
                      ...-.. ..+.-.    +......|..+.|.        |+.+. ||.+-..|.+.+-.-.+...+..+.. +..+.+..
T Consensus       188 nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~-lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vgak  265 (1189)
T KOG2041|consen  188 NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR-LAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGAK  265 (1189)
T ss_pred             cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE-EEEEEcCceehhhhhcCCCCCeEEec-ccEeecce
Confidence            210000 011001    11111224455553        46664 57888888888765544333333332 35677778


Q ss_pred             CcCcchhccccceeeeeEeeCccceeeeEEEee---------eEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899          339 YSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---------VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       339 ~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~  405 (407)
                      |+++                  +..++.++.+.         .|++|..       -|..+..++..-..|++++|
T Consensus       266 Wnh~------------------G~vLAvcG~~~da~~~~d~n~v~Fysp-------~G~i~gtlkvpg~~It~lsW  316 (1189)
T KOG2041|consen  266 WNHN------------------GAVLAVCGNDSDADEPTDSNKVHFYSP-------YGHIVGTLKVPGSCITGLSW  316 (1189)
T ss_pred             ecCC------------------CcEEEEccCcccccCccccceEEEecc-------chhheEEEecCCceeeeeEE
Confidence            8777                  55555444443         6677665       47777777777777777776

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=5.5e-05  Score=72.59  Aligned_cols=140  Identities=14%  Similarity=0.177  Sum_probs=90.0

Q ss_pred             EEEEEECCCCCcEEEEEeCCCc-----EEEEEcCCCC--C-C-ce--eeecc-----cCcceEEEEecCCCCCEEEEEeC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSC-----LILWDARSGS--T-P-AV--KVEKA-----HNADIHCVDWNPHDVNLILTGSA  260 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~--~-~-~~--~~~~~-----~~~~v~~l~~~~~~~~~l~tg~~  260 (407)
                      |..+....+. ++|++.++|+.     |++||++...  . | +.  .....     ...++.+++.+. +-..+|+|-.
T Consensus        68 v~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~  145 (933)
T KOG2114|consen   68 VQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFT  145 (933)
T ss_pred             hhHhhcccCc-eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEec
Confidence            3333333333 67777777654     8999997542  1 2 22  11222     346788899988 7889999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC-EEEEeeCCCeEEEEeCCCCCc-ccccccCCCcccCCC
Q 046899          261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGILNIWDHEKIGE-KQDYGELKYPIIHPA  338 (407)
Q Consensus       261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~  338 (407)
                      +|.|..+.-.-....  +....-......+|+.+++..++.. +||+.  -..|.+|.+..... ...+..++.++.+..
T Consensus       146 nG~V~~~~GDi~RDr--gsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss  221 (933)
T KOG2114|consen  146 NGLVICYKGDILRDR--GSRQDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSS  221 (933)
T ss_pred             CcEEEEEcCcchhcc--ccceeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeee
Confidence            999999865432221  1111112224679999999999886 44333  46799999995442 344677888888888


Q ss_pred             CcCc
Q 046899          339 YSSD  342 (407)
Q Consensus       339 ~s~d  342 (407)
                      |++.
T Consensus       222 ~~~~  225 (933)
T KOG2114|consen  222 FSDG  225 (933)
T ss_pred             cCCC
Confidence            8665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.29  E-value=0.00011  Score=65.96  Aligned_cols=119  Identities=15%  Similarity=0.099  Sum_probs=78.1

Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-------CCCCEEEEEEcCCCCCEEEEe-e--------CCC
Q 046899          248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-------HSAAVLCVQWSPDKSSVFGSS-A--------EDG  311 (407)
Q Consensus       248 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~ll~s~-~--------~d~  311 (407)
                      .+.++.++.+... |.|.+.|+....... .++...+..       ..+.+.-++++|+++++++.. +        ..+
T Consensus       202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~  279 (352)
T TIGR02658       202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR  279 (352)
T ss_pred             EcCCCcEEEEecC-CeEEEEecCCCccee-cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence            3435666666554 999999965421100 223332221       223445599999999988643 1        226


Q ss_pred             eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccc-eeeeEE-EeeeEEEeeccccccCChHHH
Q 046899          312 ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR-LLVCLT-MVKVLEIWRMIDLIYRPEEEV  389 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~-~d~~i~iwd~~~~~~~~~~~~  389 (407)
                      .|.++|+.+.+.+..+.. ...+.++++|+|                  +. .+++.+ .++.|.|.|..      +++.
T Consensus       280 ~V~ViD~~t~kvi~~i~v-G~~~~~iavS~D------------------gkp~lyvtn~~s~~VsViD~~------t~k~  334 (352)
T TIGR02658       280 FLFVVDAKTGKRLRKIEL-GHEIDSINVSQD------------------AKPLLYALSTGDKTLYIFDAE------TGKE  334 (352)
T ss_pred             EEEEEECCCCeEEEEEeC-CCceeeEEECCC------------------CCeEEEEeCCCCCcEEEEECc------CCeE
Confidence            899999999888887765 446778999998                  55 555554 57789999998      5666


Q ss_pred             HHHH
Q 046899          390 LAEL  393 (407)
Q Consensus       390 ~~~~  393 (407)
                      ++.+
T Consensus       335 i~~i  338 (352)
T TIGR02658       335 LSSV  338 (352)
T ss_pred             Eeee
Confidence            6555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.29  E-value=5.5e-05  Score=63.66  Aligned_cols=184  Identities=11%  Similarity=0.113  Sum_probs=105.3

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee------cccCcceEEEEecCCC-----CCEEEEEeCCCcE
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE------KAHNADIHCVDWNPHD-----VNLILTGSADNSI  264 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~v~~l~~~~~~-----~~~l~tg~~dg~i  264 (407)
                      .=..++|+|++ .+||.+...|+|++||+....  +....      ..-...|..+.|-+..     ...|++-..+|.+
T Consensus        45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~--lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L  121 (282)
T PF15492_consen   45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE--LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL  121 (282)
T ss_pred             hheEEEECCCC-cEEEEEcCCCeEEEEecccce--eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence            44679999999 899999999999999997543  11111      1123466677775422     2356677788888


Q ss_pred             EEEeCCCCCCCCCCCceeeec--C-CCCCEEEEEEcCCCCCEEEEeeCCCe----------EEEEeCCCCCcccc-cccC
Q 046899          265 HMFDRRKLTSDGVGSPIHKFE--G-HSAAVLCVQWSPDKSSVFGSSAEDGI----------LNIWDHEKIGEKQD-YGEL  330 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~--~-h~~~v~~v~~~~~~~~ll~s~~~d~~----------i~vwd~~~~~~~~~-~~~~  330 (407)
                      +=|-+.... +...+...++.  . +...|.++.++|..+.|++.|.....          +..|-+-+....-. ....
T Consensus       122 ~Sy~vs~gt-~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~  200 (282)
T PF15492_consen  122 RSYLVSVGT-NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSS  200 (282)
T ss_pred             eeEEEEccc-CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcccc
Confidence            877753210 00033334433  2 46689999999998877766655433          45565544322211 1111


Q ss_pred             CCcccCCCCcCcchhccc----------cceeeeeEeeCccceeeeEEEeeeEEEeecccccc
Q 046899          331 KYPIIHPAYSSDMLDIET----------KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY  383 (407)
Q Consensus       331 ~~~v~~~~~s~d~~~~~~----------~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~  383 (407)
                      ...+....-...++.+.+          ....-.+.+++.+..+++...+|.|.+|++.....
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  201 EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            111111100000111110          00111345666688999999999999999985443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=0.00013  Score=67.54  Aligned_cols=91  Identities=11%  Similarity=0.098  Sum_probs=69.7

Q ss_pred             CcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccc
Q 046899           66 NEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHV  145 (407)
Q Consensus        66 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~  145 (407)
                      +...+......+..+.....|.+.+++| +.+.|+.|+.||+|.+||...+...                          
T Consensus       242 E~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~--------------------------  294 (545)
T PF11768_consen  242 ECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL--------------------------  294 (545)
T ss_pred             EeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee--------------------------
Confidence            3333344455667778999999999999 7788999999999999998754211                          


Q ss_pred             cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899          146 SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR  225 (407)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  225 (407)
                                                                  +....-..+.++|||+| .+|++|+..|.+.+||+.
T Consensus       295 --------------------------------------------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  295 --------------------------------------------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             --------------------------------------------eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence                                                        11122346789999999 899999999999999997


Q ss_pred             CCC
Q 046899          226 SGS  228 (407)
Q Consensus       226 ~~~  228 (407)
                      -..
T Consensus       330 Lsp  332 (545)
T PF11768_consen  330 LSP  332 (545)
T ss_pred             cCc
Confidence            554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=3.3e-05  Score=71.35  Aligned_cols=115  Identities=17%  Similarity=0.337  Sum_probs=82.9

Q ss_pred             CEEEEEECCCCCcEEEEEe----CCCc----EEEEEcCCCCCC-ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          196 TVEDVQFCPSSAQEFCSVG----DDSC----LILWDARSGSTP-AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~----~dg~----i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                      ...++.|+-..++.+.+..    .+|.    -++|++...+.. ...+....+..|.+.+++| +...++.|+.||+|.+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence            3467788775556666543    2343    356777654421 1223336778999999999 8899999999999999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      ||...      +  +..+....-..+.++|||+|. ++++|+..|.+.+||+.-
T Consensus       286 yD~~~------~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  286 YDTTR------G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEcCC------C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeec
Confidence            99986      3  223333456689999999999 557999999999999864

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.00017  Score=67.20  Aligned_cols=133  Identities=11%  Similarity=0.042  Sum_probs=82.9

Q ss_pred             CEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE-EEeCC--CcEEEEeC
Q 046899          196 TVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSAD--NSIHMFDR  269 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-tg~~d--g~i~vwd~  269 (407)
                      .+..-.|+|+|..+++..+.   +..|.++|+.+++.   ..+....+......|+| |++.++ +.+.+  ..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---EKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---EEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEEC
Confidence            67789999999443443333   35699999988772   22223455566788999 776554 44434  46777787


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      ..      ++ ...+..+........|+|||+.|+.+....+  .|.+.|+..++..+.... ..  ....||||
T Consensus       265 ~~------g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPD  329 (419)
T PRK04043        265 NT------KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTY  329 (419)
T ss_pred             CC------Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCC
Confidence            65      33 4445444433445689999998866654444  688888877655332221 11  13478888

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.20  E-value=0.00036  Score=63.27  Aligned_cols=245  Identities=11%  Similarity=0.087  Sum_probs=133.8

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc----CCCCCCC-----------------------CC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA----ADSHPDL-----------------------DQ  134 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~-----------------------d~  134 (407)
                      ..-++..++|+| .|.+|++.... .|.+|.......+..+...    ....|..                       +.
T Consensus        31 ~~~p~~~~~~SP-~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          31 ENWPVAYVSESP-LGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             cCcchhheeecC-cchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence            456788999999 89999887764 6888887654322111100    0000000                       45


Q ss_pred             cEEEEeccccccccccCCCCCc-----ccccCCCCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCC-
Q 046899          135 SVVLWSIQDHVSALAAEPGSAK-----STASGGANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSA-  207 (407)
Q Consensus       135 ~i~~w~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~-  207 (407)
                      .+.+||..++.....+..-...     +......+. +++.-....+.++++...-....+.. ....|....|+|.+. 
T Consensus       109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~-y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~  187 (561)
T COG5354         109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK-YVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH  187 (561)
T ss_pred             ceeEEeccCceeEeeccccCCcccccceeeeeecch-hhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence            7999999887543332221111     111222222 22222445566666411111111111 125678888998742 


Q ss_pred             cEEEE-----EeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-----------CCCcEEEEeCCC
Q 046899          208 QEFCS-----VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-----------ADNSIHMFDRRK  271 (407)
Q Consensus       208 ~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-----------~dg~i~vwd~~~  271 (407)
                      ..|+.     .+..+++++|.+..........+.  ...-..+.|++ .+++++.--           ....+++++++.
T Consensus       188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e  264 (561)
T COG5354         188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITE  264 (561)
T ss_pred             ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecc
Confidence            22333     356788999999865522222222  22234688888 566554321           124577888775


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCE-EEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV-FGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                             ..+.....-.++|...+|.|.++.. +++|-.+..+.++|++.. ....+  ..++-..+.|||.
T Consensus       265 -------~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~  326 (561)
T COG5354         265 -------RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPH  326 (561)
T ss_pred             -------cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCc
Confidence                   2222222557899999999988754 234457899999999975 22222  2333345666665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.18  E-value=5.2e-06  Score=79.59  Aligned_cols=145  Identities=16%  Similarity=0.195  Sum_probs=109.9

Q ss_pred             cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC-
Q 046899          184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN-  262 (407)
Q Consensus       184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg-  262 (407)
                      .+....+..|+...+|++|+-.. +.|+.|+..|.|++|++.++.  .......|+++|+-+.-+. ++..+++.+.-. 
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred             cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc--ccccccccccccccccccC-CcceeeeeccccC
Confidence            34556677788999999999987 899999999999999999998  5667789999999999988 777766655443 


Q ss_pred             -cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc----CCCcccCC
Q 046899          263 -SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE----LKYPIIHP  337 (407)
Q Consensus       263 -~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~  337 (407)
                       ...+|++...     +.+.++|.+    -.++.|+.....- +.|.......+||+.++..++++..    ....-..+
T Consensus      1167 PlsaLW~~~s~-----~~~~Hsf~e----d~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1167 PLSALWDASST-----GGPRHSFDE----DKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred             chHHHhccccc-----cCccccccc----cceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence             4679998863     567777764    3568888764433 2444456788999999988887432    23334567


Q ss_pred             CCcCc
Q 046899          338 AYSSD  342 (407)
Q Consensus       338 ~~s~d  342 (407)
                      .|||+
T Consensus      1237 ~FsP~ 1241 (1516)
T KOG1832|consen 1237 HFSPC 1241 (1516)
T ss_pred             ccCCC
Confidence            89887

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.2e-05  Score=71.37  Aligned_cols=208  Identities=12%  Similarity=0.088  Sum_probs=134.7

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC-CCcEEEEeCcCCCCcccccCc
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD-SPDVLIWDVEAQPNRHAVLGA  125 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~  125 (407)
                      .+.+++.|+..++|-.+   ........+  ....|-+.|.+++.+- ++-++.|++. |..++++|+..-....-    
T Consensus        22 fiiqASlDGh~KFWkKs---~isGvEfVK--hFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~Dminm----   91 (558)
T KOG0882|consen   22 FIIQASLDGHKKFWKKS---RISGVEFVK--HFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINM----   91 (558)
T ss_pred             eEEeeecchhhhhcCCC---Cccceeehh--hhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhh----
Confidence            36688899999999111   001111111  1224778888888655 8989999777 99999999875422110    


Q ss_pred             CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC
Q 046899          126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS  205 (407)
Q Consensus       126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~  205 (407)
                                +++.++.                                                    +.+ ++-.+|.
T Consensus        92 ----------iKL~~lP----------------------------------------------------g~a-~wv~skG  108 (558)
T KOG0882|consen   92 ----------IKLVDLP----------------------------------------------------GFA-EWVTSKG  108 (558)
T ss_pred             ----------cccccCC----------------------------------------------------Cce-EEecCCC
Confidence                      0111110                                                    111 1111221


Q ss_pred             CC--cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCc---
Q 046899          206 SA--QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSP---  280 (407)
Q Consensus       206 ~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~---  280 (407)
                      ..  .+-++.-.++.+.++|-+....+......-|..+|.++.+++ -+..+++....|.|..|....+-.-...+.   
T Consensus       109 d~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~  187 (558)
T KOG0882|consen  109 DKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE  187 (558)
T ss_pred             CeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCcccccccc
Confidence            11  122333457899999988766555556678999999999999 888899999999999998873110000111   


Q ss_pred             ------eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          281 ------IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       281 ------~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                            +..+........++.|+|++..+ ++-+.|..|+++++++++.++.++.
T Consensus       188 ~K~eTdLy~f~K~Kt~pts~Efsp~g~qi-stl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  188 LKHETDLYGFPKAKTEPTSFEFSPDGAQI-STLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             ccccchhhcccccccCccceEEccccCcc-cccCcccEEEEEEeccchhhhhhhc
Confidence                  12222245678999999999976 7888999999999999988887654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.15  E-value=0.00028  Score=65.79  Aligned_cols=245  Identities=11%  Similarity=0.007  Sum_probs=131.9

Q ss_pred             eEEEEeeCCCcEEEEeCcCCCCcccccCcCC--CCC----------CCCCcEEEEeccccccccccCCCCCc------cc
Q 046899           97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAAD--SHP----------DLDQSVVLWSIQDHVSALAAEPGSAK------ST  158 (407)
Q Consensus        97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~--~~~----------~~d~~i~~w~~~~~~~~~~~~~~~~~------~~  158 (407)
                      ..++.++.+|.+..+|..+++.+-.......  ..|          ..++.+..+|..++............      ..
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~s  200 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESA  200 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCC
Confidence            3556677889999999998876543322111  111          11566777777666443322211100      00


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc-------CEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED-------TVEDVQFCP--SSAQEFCSVGDDSCLILWDARSGST  229 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-------~v~~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~  229 (407)
                      +. .....+..+..++.+..+|..+++.+-.......       ....+.-+|  .+ ..++.++.+|.+..+|..+++ 
T Consensus       201 P~-v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~-  277 (394)
T PRK11138        201 PA-TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQ-  277 (394)
T ss_pred             CE-EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCC-
Confidence            00 0011234455666666666666665433221000       011111122  13 356667789999999999987 


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-CCEEEEEEcCCCCCEEEEee
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-AAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~ll~s~~  308 (407)
                       ....... .. ...+..   .+..++.++.+|.+..+|..+      ++.+.....-. ....+.... ++ ++ ..++
T Consensus       278 -~~W~~~~-~~-~~~~~~---~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~~~~~~~~sp~v~-~g-~l-~v~~  342 (394)
T PRK11138        278 -IVWKREY-GS-VNDFAV---DGGRIYLVDQNDRVYALDTRG------GVELWSQSDLLHRLLTAPVLY-NG-YL-VVGD  342 (394)
T ss_pred             -EEEeecC-CC-ccCcEE---ECCEEEEEcCCCeEEEEECCC------CcEEEcccccCCCcccCCEEE-CC-EE-EEEe
Confidence             3333211 11 112222   345677778899999999988      66654432111 111222222 33 35 4788


Q ss_pred             CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          309 EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       309 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      .||.+.+.|..+++.+-...-....+..   +|             ..   .++.|+.++.||.|+.++.
T Consensus       343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s---~P-------------~~---~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        343 SEGYLHWINREDGRFVAQQKVDSSGFLS---EP-------------VV---ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCccee---CC-------------EE---ECCEEEEEeCCceEEEEeC
Confidence            8999999999998776555432222211   11             11   1557888899998887764

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.09  E-value=2.8e-06  Score=78.62  Aligned_cols=186  Identities=15%  Similarity=0.139  Sum_probs=118.5

Q ss_pred             ccCEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe----CCCcEEEEe
Q 046899          194 EDTVEDVQFCPSS-AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS----ADNSIHMFD  268 (407)
Q Consensus       194 ~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~----~dg~i~vwd  268 (407)
                      ...+.|+++.-.. ..+++.|..+|.|-+-.++...-........+..+.++++|++.|.+.||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4456777765433 25899999999999999987664333445678889999999998888898884    356899999


Q ss_pred             CCCCCCCCCCCcee--eecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchh
Q 046899          269 RRKLTSDGVGSPIH--KFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLD  345 (407)
Q Consensus       269 ~~~~~~~~~~~~~~--~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  345 (407)
                      +.+.-.    .|..  .|.+ ......+++|..+.+.+ .+|.....++++|++.. ..+...-....+.++..+|-   
T Consensus       136 i~s~lt----vPke~~~fs~~~l~gqns~cwlrd~klv-laGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~---  206 (783)
T KOG1008|consen  136 INSLLT----VPKESPLFSSSTLDGQNSVCWLRDTKLV-LAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPF---  206 (783)
T ss_pred             cccccC----CCccccccccccccCccccccccCcchh-hcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCC---
Confidence            987311    1111  1221 33456688999777754 58888889999999942 22222222222333333331   


Q ss_pred             ccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccc----eeEeeccC
Q 046899          346 IETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSH----IFGCDKSC  407 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~----v~~~~~s~  407 (407)
                                    ..+++++- .||.|-+||..    +.-..++..+..-.+.    +..++|+|
T Consensus       207 --------------~~nY~cs~-~dg~iAiwD~~----rnienpl~~i~~~~N~~~~~l~~~aycP  253 (783)
T KOG1008|consen  207 --------------SPNYFCSN-SDGDIAIWDTY----RNIENPLQIILRNENKKPKQLFALAYCP  253 (783)
T ss_pred             --------------CCCceecc-ccCceeeccch----hhhccHHHHHhhCCCCcccceeeEEecc
Confidence                          13344444 49999999942    1134555555544443    88888875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.07  E-value=0.0013  Score=66.02  Aligned_cols=117  Identities=16%  Similarity=0.350  Sum_probs=77.1

Q ss_pred             EEEEECCCCCcEEEEEe----CC-CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE---eCCCcEEEEeC
Q 046899          198 EDVQFCPSSAQEFCSVG----DD-SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG---SADNSIHMFDR  269 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg---~~dg~i~vwd~  269 (407)
                      ..|.|--+| .+||+..    .+ ..|++||-+ +.  ....-....+.-.+++|-| .|..+++-   +.|+.|.+|..
T Consensus       199 ~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  199 TSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             ceEEEccCC-cEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEec
Confidence            468999988 7888732    24 799999976 44  2222222233346799999 88888875   34567999986


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE---eeCCCeEEEEeCCCCCc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGILNIWDHEKIGE  323 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s---~~~d~~i~vwd~~~~~~  323 (407)
                      +-...   +.-...+......|..++|+.++. +||.   ......|++|-+.+..-
T Consensus       274 NGL~h---g~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  274 NGLRH---GEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             CCccc---cccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeEE
Confidence            64322   222223333344599999999998 5565   45555699999987543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.06  E-value=0.00036  Score=71.20  Aligned_cols=156  Identities=15%  Similarity=0.253  Sum_probs=96.5

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC----C---------CC-CC-------ceeeec----------------
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR----S---------GS-TP-------AVKVEK----------------  236 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~----~---------~~-~~-------~~~~~~----------------  236 (407)
                      ...|.+++|+||+ .+|+..+.+++|.+.+-.    .         +. .+       ....+.                
T Consensus       120 d~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  120 DSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             cCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            4579999999999 678888778887765321    0         00 00       000000                


Q ss_pred             --------ccCcceEEEEecCCCCCEEEEEeC---C---CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899          237 --------AHNADIHCVDWNPHDVNLILTGSA---D---NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS  302 (407)
Q Consensus       237 --------~~~~~v~~l~~~~~~~~~l~tg~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  302 (407)
                              .+...-..|+|-. ||.+||+.+.   .   ..+|||+.+       +....+-..-.+--.+++|.|.|. 
T Consensus       199 ~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-------G~L~stSE~v~gLe~~l~WrPsG~-  269 (928)
T PF04762_consen  199 PKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-------GELQSTSEPVDGLEGALSWRPSGN-  269 (928)
T ss_pred             CccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-------ceEEeccccCCCccCCccCCCCCC-
Confidence                    0223445789988 9999998875   2   479999876       444444443344456789999999 


Q ss_pred             EEEEeeC---CCeEEEEeCCCCCccccc----ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEE
Q 046899          303 VFGSSAE---DGILNIWDHEKIGEKQDY----GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEI  375 (407)
Q Consensus       303 ll~s~~~---d~~i~vwd~~~~~~~~~~----~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~i  375 (407)
                      ++|+.-.   ...|.+|.-+ +-+...|    ......|..+.|++|                  +..++....| .|++
T Consensus       270 lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~d------------------s~iLAv~~~~-~vqL  329 (928)
T PF04762_consen  270 LIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSD------------------SEILAVWLED-RVQL  329 (928)
T ss_pred             EEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCC------------------CCEEEEEecC-CceE
Confidence            5566653   3567777633 3222222    234566788888887                  5556655544 4888


Q ss_pred             eecc
Q 046899          376 WRMI  379 (407)
Q Consensus       376 wd~~  379 (407)
                      |-..
T Consensus       330 Wt~~  333 (928)
T PF04762_consen  330 WTRS  333 (928)
T ss_pred             EEee
Confidence            8764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=1.3e-05  Score=76.13  Aligned_cols=152  Identities=14%  Similarity=0.193  Sum_probs=107.3

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      ...+.|++++.   ..|+-|+.+|.|++++..- .  . .+...|...      +- +|.++++|+.||+|.|..+-+  
T Consensus        39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~--~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~--  102 (846)
T KOG2066|consen   39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQG-N--P-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFT--  102 (846)
T ss_pred             hhHHHHHHhhc---ceeeeccccceEEEEecCC-c--c-ccccccccc------cc-CCceEEEecCCCcEEEeeccC--
Confidence            35667777764   6799999999999999763 3  1 233344433      44 899999999999999999888  


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCC-----CCCEEEEeeCCCeEEEEeCCCCCcccc--cccCCCcccCCCCcCcchhc
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPD-----KSSVFGSSAEDGILNIWDHEKIGEKQD--YGELKYPIIHPAYSSDMLDI  346 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~ll~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~~  346 (407)
                          .+...++. ...++.+|+++|+     .++ +++||.-| +.++.-+-.+....  .....++|.++.|       
T Consensus       103 ----~~~~~~~d-f~rpiksial~Pd~~~~~sk~-fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W-------  168 (846)
T KOG2066|consen  103 ----DDEITQYD-FKRPIKSIALHPDFSRQQSKQ-FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW-------  168 (846)
T ss_pred             ----CccceeEe-cCCcceeEEeccchhhhhhhh-eeecCcce-EEEehhhhhcCccceeeecCccceEEEEe-------
Confidence                44444444 3468999999998     333 56999888 87887554444332  3455677777776       


Q ss_pred             cccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhh
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDK  395 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  395 (407)
                                    .+.+++|..|-.|+|||..      +++.+..++.
T Consensus       169 --------------~g~lIAWand~Gv~vyd~~------~~~~l~~i~~  197 (846)
T KOG2066|consen  169 --------------RGNLIAWANDDGVKVYDTP------TRQRLTNIPP  197 (846)
T ss_pred             --------------cCcEEEEecCCCcEEEecc------ccceeeccCC
Confidence                          3446778888899999998      5555554443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.00  E-value=0.00015  Score=71.33  Aligned_cols=139  Identities=15%  Similarity=0.181  Sum_probs=98.6

Q ss_pred             cCCCCCCCCCCCCcCceeeEeecccC-EEEEEECCC----CCcEEEEEeCCCcEEEEEcCCCCCCceee---ecccCcce
Q 046899          171 SGGNGDKPLESPSIGARGKYLGHEDT-VEDVQFCPS----SAQEFCSVGDDSCLILWDARSGSTPAVKV---EKAHNADI  242 (407)
Q Consensus       171 ~~~~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v  242 (407)
                      .....+.-.|+..++.+..+..+... |..++-...    .+..-+.|-.+..+..||.|-....++..   ........
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            35567777899999999999877654 666653211    11335567778999999999754222211   11234456


Q ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      .|++-+.  ..+||+|+.+|.||+||--.      ......|.+-..+|..|..+.||++|||||  +..+.|+++.
T Consensus       581 s~~aTt~--~G~iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  581 SCFATTE--DGYIAVGSNKGDIRLYDRLG------KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             eEEEecC--CceEEEEeCCCcEEeecccc------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            7777664  45899999999999999432      234445667789999999999999998777  6789999864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.00  E-value=0.003  Score=54.70  Aligned_cols=109  Identities=13%  Similarity=0.148  Sum_probs=77.9

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc--ee---eecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA--VK---VEKAHNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~---~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                      ..-...+.|+|+|++..++++-+..+.|..+++.......  ..   .+....+..-.++++. ++++.++....+.|.+
T Consensus       131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~  209 (246)
T PF08450_consen  131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVV  209 (246)
T ss_dssp             EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEE
T ss_pred             cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEE
Confidence            3445678999999995556677888999999997544201  11   1112223477899999 8898888888899999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEE-cCCCCCEEEEee
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQW-SPDKSSVFGSSA  308 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~ll~s~~  308 (407)
                      +|.+       ++.+..+......+++++| -++...|++|.+
T Consensus       210 ~~p~-------G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  210 FDPD-------GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EETT-------SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             ECCC-------ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            9987       5778877766568999999 477777887764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=0.001  Score=61.14  Aligned_cols=261  Identities=15%  Similarity=0.227  Sum_probs=141.9

Q ss_pred             EEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC----cCCCCCCC-------------------CCcEEEEeccc
Q 046899           87 NRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG----AADSHPDL-------------------DQSVVLWSIQD  143 (407)
Q Consensus        87 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~-------------------d~~i~~w~~~~  143 (407)
                      +-+.|+| -|.+|+|-..- -|.+|--.+-...+.+..    .....|+.                   ...+.|||+.+
T Consensus       214 tyv~wSP-~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  214 TYVRWSP-KGTYLVTFHKQ-GIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeEEecC-CceEEEEEecc-ceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            4578999 89999998775 488896544322211110    00111111                   36799999998


Q ss_pred             cccccccCC--CCCccccc--CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---
Q 046899          144 HVSALAAEP--GSAKSTAS--GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---  216 (407)
Q Consensus       144 ~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---  216 (407)
                      +...-.++.  .....-+.  =+.+....+.-...+|.|++.++...+..-.-.-..|....|+|.+ ++||--+..   
T Consensus       292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~  370 (698)
T KOG2314|consen  292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNN  370 (698)
T ss_pred             cchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCc-ceEEEEcccccC
Confidence            854322222  11111000  0112223333344677788777655443332344678889999987 677654321   


Q ss_pred             --CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEE----------EeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899          217 --SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT----------GSADNSIHMFDRRKLTSDGVGSPIHKF  284 (407)
Q Consensus       217 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~t----------g~~dg~i~vwd~~~~~~~~~~~~~~~~  284 (407)
                        ..+.+-.+-+.+  .+++..-+.-.=..+-|-. +|.+|+.          ++.-..+.|+.++.-     .-++...
T Consensus       371 ~parvtL~evPs~~--~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK-----dIpve~v  442 (698)
T KOG2314|consen  371 IPARVTLMEVPSKR--EIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK-----DIPVEVV  442 (698)
T ss_pred             CcceEEEEecCccc--eeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeecc-----CCCceee
Confidence              234454444443  2322222222222355555 5555543          233335667777762     2344444


Q ss_pred             cCCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCC-CCc---ccccccCCCcccCCCCcCcchhccccceeeeeEee
Q 046899          285 EGHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEK-IGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHL  358 (407)
Q Consensus       285 ~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~-~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~  358 (407)
                      . -...|...+|-|.|....+..+.  -.++.+|.+++ ...   +..++.  ...+.+.|||.                
T Consensus       443 e-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk----------------  503 (698)
T KOG2314|consen  443 E-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK----------------  503 (698)
T ss_pred             e-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC----------------
Confidence            4 46789999999999865333332  35788998883 222   222322  33456667665                


Q ss_pred             CccceeeeEEE---eeeEEEeecc
Q 046899          359 IHGRLLVCLTM---VKVLEIWRMI  379 (407)
Q Consensus       359 ~~~~~i~~~~~---d~~i~iwd~~  379 (407)
                        |..++.+..   .|.+.++|..
T Consensus       504 --G~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  504 --GRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             --CcEEEEEEecccccceEEEecc
Confidence              777775544   5699999987

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.96  E-value=0.005  Score=53.66  Aligned_cols=207  Identities=14%  Similarity=0.192  Sum_probs=124.8

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCc-EEEEeCcCCCCccccc--------CcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           85 EVNRIRELPQNSKIVATHTDSPD-VLIWDVEAQPNRHAVL--------GAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~--------~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      ....++.+|..+..++.+-.-|+ ..+||..+++....+.        +|..+.++  |. .+|-.+             
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d--G~-~LytTE-------------   69 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD--GR-LLYTTE-------------   69 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC--CC-EEEEec-------------
Confidence            34556677767777777776664 6788988876554432        23222221  11 111111             


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCC-CcCceeeEeecccCEEEEEECCCCCcEEEEEeC------------------C
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESP-SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD------------------D  216 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~------------------d  216 (407)
                                 .-.....|.|-+||.. ..+.+.++..|.-.-..+.+.|++ ..|+.+..                  +
T Consensus        70 -----------nd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~  137 (305)
T PF07433_consen   70 -----------NDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQ  137 (305)
T ss_pred             -----------cccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcC
Confidence                       1113455666777776 566677777666566678888988 44554421                  2


Q ss_pred             CcEEEEEcCCCCCCceeee--cccCcceEEEEecCCCCCEEEEEeCCCc-------EEEEeCCCCCCCCCCCceeeec--
Q 046899          217 SCLILWDARSGSTPAVKVE--KAHNADIHCVDWNPHDVNLILTGSADNS-------IHMFDRRKLTSDGVGSPIHKFE--  285 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~tg~~dg~-------i~vwd~~~~~~~~~~~~~~~~~--  285 (407)
                      ..+..-|.++++......+  ..|.-.+..+++++ ++..++..-..|.       |-+++...        .+..+.  
T Consensus       138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~--------~~~~~~~p  208 (305)
T PF07433_consen  138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG--------ALRLLPAP  208 (305)
T ss_pred             CceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC--------cceeccCC
Confidence            3344455556652112223  34667888999988 7766666544442       33333222        222222  


Q ss_pred             -----CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          286 -----GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       286 -----~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                           .-...+-+|++++++..+.+|+-..+.+.+||..+++.+....
T Consensus       209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence                 2356899999999999888888889999999999987766554

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.95  E-value=0.00045  Score=65.65  Aligned_cols=106  Identities=15%  Similarity=0.158  Sum_probs=71.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc------
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK------  324 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~------  324 (407)
                      ++++...  .++.|.+.|.++....+ .+.+..+.. ......++++|||+++++++..+.+|.|.|+.+.+..      
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~-~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAG-SALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCC-cceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            5666555  36789999988611000 244555553 4456899999999999999999999999999986642      


Q ss_pred             ------cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          325 ------QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       325 ------~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                            .+.+-..+| ...+|                  .+.+....+.-.|+.|-.|++.
T Consensus       363 ~~~~vvaevevGlGP-LHTaF------------------Dg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        363 PRDAVVAEPELGLGP-LHTAF------------------DGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             ccceEEEeeccCCCc-ceEEE------------------CCCCCEEEeEeecceeEEEehH
Confidence                  111111111 12233                  3336778899999999999996

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.94  E-value=0.0002  Score=61.59  Aligned_cols=177  Identities=13%  Similarity=0.090  Sum_probs=104.4

Q ss_pred             cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee-cccC---cce
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE-KAHN---ADI  242 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~---~~v  242 (407)
                      +..+..++.+..+|..+++.+-.... ...+....... + ..++.++.++.|..+|..+++  ..... ....   ...
T Consensus        39 v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   39 VYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD-G-GRVYVGTSDGSLYALDAKTGK--VLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             EEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE-T-TEEEEEETTSEEEEEETTTSC--EEEEEEE-SSCTCSTB
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec-c-cccccccceeeeEecccCCcc--eeeeeccccccccccc
Confidence            44446788888888888887766653 22111111222 2 356666688899999999998  44442 2221   111


Q ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC----------EEEEEEcCCCCCEEEEeeCCCe
Q 046899          243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA----------VLCVQWSPDKSSVFGSSAEDGI  312 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~----------v~~v~~~~~~~~ll~s~~~d~~  312 (407)
                      ....... .+..++.+..++.|..+|+++      ++.+.........          +..-....++ .++ .++.++.
T Consensus       114 ~~~~~~~-~~~~~~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~g~  184 (238)
T PF13360_consen  114 SSSSPAV-DGDRLYVGTSSGKLVALDPKT------GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVY-VSSGDGR  184 (238)
T ss_dssp             --SEEEE-ETTEEEEEETCSEEEEEETTT------TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEE-EECCTSS
T ss_pred             cccCceE-ecCEEEEEeccCcEEEEecCC------CcEEEEeecCCCCCCcceeeecccccceEEECC-EEE-EEcCCCe
Confidence            1222222 367788888899999999999      8888877664322          1222222344 465 4555664


Q ss_pred             -EEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          313 -LNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       313 -i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                       +.+ |+.+++.+-... ... ..                   .....+++.|+..+.++.|..||+.
T Consensus       185 ~~~~-d~~tg~~~w~~~-~~~-~~-------------------~~~~~~~~~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  185 VVAV-DLATGEKLWSKP-ISG-IY-------------------SLPSVDGGTLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             EEEE-ETTTTEEEEEEC-SS--EC-------------------ECEECCCTEEEEEETTTEEEEEETT
T ss_pred             EEEE-ECCCCCEEEEec-CCC-cc-------------------CCceeeCCEEEEEeCCCEEEEEECC
Confidence             666 999977442111 111 00                   1122346777777788999999998

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.003  Score=61.25  Aligned_cols=129  Identities=9%  Similarity=0.161  Sum_probs=87.4

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                      ..++.+++.+.+- ..+|.|-.||.|.++.-.  ..+-........-.++|+.+.+.. ++..++-...-..|.+|.+..
T Consensus       125 ~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~g  202 (933)
T KOG2114|consen  125 PSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSG  202 (933)
T ss_pred             CCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecC
Confidence            4578888998886 789999999999988532  111111222233467999999977 666533333356799999985


Q ss_pred             CCCCCCCCc-eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc-cCCC
Q 046899          272 LTSDGVGSP-IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKY  332 (407)
Q Consensus       272 ~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~  332 (407)
                            ..| +..+..|..+++|..+++....++ +++ +.-+.+||....+..-+++ ++..
T Consensus       203 ------r~p~~~~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  203 ------RTPSLKVLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             ------CCcceeeeccCCccceeeecCCCCccEE-Eec-CceEEEEcCCCcceeeeecCCCeE
Confidence                  333 445777888999999997766565 333 5679999988766555555 4433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.81  E-value=0.00095  Score=57.38  Aligned_cols=140  Identities=12%  Similarity=0.077  Sum_probs=82.7

Q ss_pred             cccccCCCCCCCCCCCCcCceeeE-eecc---cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc-
Q 046899          167 NASKSGGNGDKPLESPSIGARGKY-LGHE---DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD-  241 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~-~~~~---~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-  241 (407)
                      +..+..++.+..+|..+++.+-.. ....   ...........+ ..++.+..++.|..+|+++++  ........... 
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~--~~w~~~~~~~~~  155 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGK--LLWKYPVGEPRG  155 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTE--EEEEEESSTT-S
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCc--EEEEeecCCCCC
Confidence            344446667888888888887763 3221   111122222224 567888889999999999998  44444332211 


Q ss_pred             ---------e-EEEEecCCCCCEEEEEeCCCc-EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          242 ---------I-HCVDWNPHDVNLILTGSADNS-IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       242 ---------v-~~l~~~~~~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                               + ..+.+.  ++ .++.++.++. +.+ |+.+      ++.+....  ...+..+ ....+..|+ .++.+
T Consensus       156 ~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~t------g~~~w~~~--~~~~~~~-~~~~~~~l~-~~~~~  221 (238)
T PF13360_consen  156 SSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLAT------GEKLWSKP--ISGIYSL-PSVDGGTLY-VTSSD  221 (238)
T ss_dssp             S--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTT------TEEEEEEC--SS-ECEC-EECCCTEEE-EEETT
T ss_pred             CcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCC------CCEEEEec--CCCccCC-ceeeCCEEE-EEeCC
Confidence                     1 233333  34 6666677775 555 9998      66554333  2223332 334566565 55589


Q ss_pred             CeEEEEeCCCCCc
Q 046899          311 GILNIWDHEKIGE  323 (407)
Q Consensus       311 ~~i~vwd~~~~~~  323 (407)
                      +.|..||+++++.
T Consensus       222 ~~l~~~d~~tG~~  234 (238)
T PF13360_consen  222 GRLYALDLKTGKV  234 (238)
T ss_dssp             TEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCE
Confidence            9999999999765

...

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.0014  Score=62.09  Aligned_cols=118  Identities=6%  Similarity=0.077  Sum_probs=79.6

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee----cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE----KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      +.+..+..++.. .++|.|+..|.|.++-++...++.....    ..|+..|++++|++ ++..+++|...|.|..-.+.
T Consensus        77 ~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen   77 GITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             ceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEec
Confidence            445566778877 8899999999999999988654322222    23678999999999 99999999999999888776


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      ... -. ......+-.-.+.|-.+... ++ +||++...  ...+++++.
T Consensus       155 s~~-~~-~~~~q~il~~ds~IVQlD~~-q~-~LLVStl~--r~~Lc~tE~  198 (726)
T KOG3621|consen  155 SRQ-AF-LSKSQEILSEDSEIVQLDYL-QS-YLLVSTLT--RCILCQTEA  198 (726)
T ss_pred             hhh-hh-ccccceeeccCcceEEeecc-cc-eehHhhhh--hhheeecch
Confidence            510 00 12233333446778777765 33 35544442  234666654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.71  E-value=0.0046  Score=57.67  Aligned_cols=214  Identities=11%  Similarity=-0.001  Sum_probs=112.9

Q ss_pred             CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEE-EEECC--CCCcE
Q 046899          133 DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED-VQFCP--SSAQE  209 (407)
Q Consensus       133 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~-l~~~~--~~~~~  209 (407)
                      ++.+..+|..++.................-.+..+..+..++.+..+|..+++.+-.+......+.. ..-+|  .+ ..
T Consensus       129 ~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~  207 (394)
T PRK11138        129 KGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GG  207 (394)
T ss_pred             CCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CE
Confidence            5677777777665433322221111100011223445667788888888888876555422111000 00011  12 24


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCceeeecc-cC---c---ceEEEEecCC-CCCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899          210 FCSVGDDSCLILWDARSGSTPAVKVEKA-HN---A---DIHCVDWNPH-DVNLILTGSADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       210 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~---~---~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                      ++.++.+|.+...|..+++.  ...... ..   .   ....+..+|. .+..++.++.+|.+..+|..+      ++.+
T Consensus       208 v~~~~~~g~v~a~d~~~G~~--~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t------G~~~  279 (394)
T PRK11138        208 AIVGGDNGRVSAVLMEQGQL--IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS------GQIV  279 (394)
T ss_pred             EEEEcCCCEEEEEEccCChh--hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC------CCEE
Confidence            66677889999999988873  222110 00   0   0011111220 234566777899999999998      7766


Q ss_pred             eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcc
Q 046899          282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG  361 (407)
Q Consensus       282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~  361 (407)
                      .+....  ....+..  .+..++ .++.++.+..+|..+++.+-.........   .-+|             ..   .+
T Consensus       280 W~~~~~--~~~~~~~--~~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~sp-------------~v---~~  335 (394)
T PRK11138        280 WKREYG--SVNDFAV--DGGRIY-LVDQNDRVYALDTRGGVELWSQSDLLHRL---LTAP-------------VL---YN  335 (394)
T ss_pred             EeecCC--CccCcEE--ECCEEE-EEcCCCeEEEEECCCCcEEEcccccCCCc---ccCC-------------EE---EC
Confidence            554321  1112222  344465 66779999999999876543222111110   0011             11   15


Q ss_pred             ceeeeEEEeeeEEEeecc
Q 046899          362 RLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       362 ~~i~~~~~d~~i~iwd~~  379 (407)
                      +.|+.++.+|.|++.|..
T Consensus       336 g~l~v~~~~G~l~~ld~~  353 (394)
T PRK11138        336 GYLVVGDSEGYLHWINRE  353 (394)
T ss_pred             CEEEEEeCCCEEEEEECC
Confidence            677788888888888876

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00028  Score=65.76  Aligned_cols=94  Identities=19%  Similarity=0.362  Sum_probs=76.6

Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE-EEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      ....+..+.|+| .-.++|++..+|.|.+..+.       .+.+.++.-|...++ +++|.|||+ ++|.|-.||+|++-
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~   89 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLH   89 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEec-------cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEE
Confidence            355678899999 88999999999999999887       478888887777777 999999999 66899999999999


Q ss_pred             eCCCCCcccccc-cCCCcccCCCCc
Q 046899          317 DHEKIGEKQDYG-ELKYPIIHPAYS  340 (407)
Q Consensus       317 d~~~~~~~~~~~-~~~~~v~~~~~s  340 (407)
                      |++++..+..+. ....+|..+-|+
T Consensus        90 Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   90 DVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             EccCCCceeccccccccchheeecc
Confidence            999988877632 234455555554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00029  Score=65.62  Aligned_cols=94  Identities=15%  Similarity=0.290  Sum_probs=78.0

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE-EEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH-CVDWNPHDVNLILTGSADNSIHMFDRRKL  272 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  272 (407)
                      ...+.-+.|+|.. .++|.+..+|.|.+..++ .+  .+.++..++..++ +++|.| ||+++|.|-.||+|++-|+.+ 
T Consensus        20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~q--Rlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~-   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQ--RLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK-   93 (665)
T ss_pred             ccceEEEEEcCcc-chhheeccCCcEEEEEec-cc--eeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccC-
Confidence            3467789999988 799999999999999988 44  4777777888887 999999 999999999999999999999 


Q ss_pred             CCCCCCCceeee-cCCCCCEEEEEEcC
Q 046899          273 TSDGVGSPIHKF-EGHSAAVLCVQWSP  298 (407)
Q Consensus       273 ~~~~~~~~~~~~-~~h~~~v~~v~~~~  298 (407)
                           +..+..+ ..-...|.++-|.+
T Consensus        94 -----~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 -----GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             -----CCceeccccccccchheeeccc
Confidence                 6666553 22466788888874

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.00064  Score=62.18  Aligned_cols=142  Identities=15%  Similarity=0.177  Sum_probs=100.5

Q ss_pred             cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC------cEEEEEeCCCcEEEEEcCCCCCCceeeeccc--
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA------QEFCSVGDDSCLILWDARSGSTPAVKVEKAH--  238 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--  238 (407)
                      +..+.....+.-.|+..|+.+...+-+.. |+-+.+.|+..      ..-+.|-.|..|.-||.|-.....+...+.|  
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34455667777889999999999887666 77777777641      1123456688999999986543112222233  


Q ss_pred             --CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          239 --NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       239 --~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                        .....|.+-.  ...++++|+.+|.||+||.-.      ......+.+-..+|..|..+.+|++||+||  +..+.+.
T Consensus       428 ~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi  497 (644)
T KOG2395|consen  428 STKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIG------RRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLI  497 (644)
T ss_pred             ccccccceeeec--CCceEEEeecCCcEEeehhhh------hhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEE
Confidence              2234455544  456899999999999999843      344456777889999999999999998666  6888888


Q ss_pred             eCC
Q 046899          317 DHE  319 (407)
Q Consensus       317 d~~  319 (407)
                      ++.
T Consensus       498 ~t~  500 (644)
T KOG2395|consen  498 DTL  500 (644)
T ss_pred             EEe
Confidence            875

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.63  E-value=0.0022  Score=59.08  Aligned_cols=245  Identities=12%  Similarity=0.101  Sum_probs=118.1

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc--cccCcCCCC----CCCCCcEEEEeccccccccccCCCCCccc
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH--AVLGAADSH----PDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~~~~~~~~----~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      .|+.+.|.+..+ .|+.|...|.|.||.+...+...  .........    ...++.-.+-|+.....            
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~------------   69 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP------------   69 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--------------
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC------------
Confidence            588999999444 68888899999999987654332  000000000    00011112222221000            


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee--ec
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV--EK  236 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~  236 (407)
                        .             .+    .+...+...+....++|++++.+.-|  ++|.|.++|.+.+.|+|...  .+..  +.
T Consensus        70 --~-------------~~----~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa--vI~~~~i~  126 (395)
T PF08596_consen   70 --P-------------SL----KEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA--VIYNENIR  126 (395)
T ss_dssp             --T-------------T-----SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE--EEEEEEGG
T ss_pred             --c-------------cc----ccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe--EEeecccc
Confidence              0             00    01123444555568999999999877  89999999999999998765  2222  22


Q ss_pred             c------cCcceEEEEecC----CCC---CEEEEEeCCCcEEEEeCCCCCCCCCC--CceeeecCCCCCEEEEE-EcCC-
Q 046899          237 A------HNADIHCVDWNP----HDV---NLILTGSADNSIHMFDRRKLTSDGVG--SPIHKFEGHSAAVLCVQ-WSPD-  299 (407)
Q Consensus       237 ~------~~~~v~~l~~~~----~~~---~~l~tg~~dg~i~vwd~~~~~~~~~~--~~~~~~~~h~~~v~~v~-~~~~-  299 (407)
                      .      ....++++.|.-    +|+   -.+++|...|.+.+|.+..... +..  +.......+.++|..+. +..+ 
T Consensus       127 ~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~-g~f~v~~~~~~~~~~~~i~~I~~i~~~~  205 (395)
T PF08596_consen  127 ESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN-GRFSVQFAGATTNHDSPILSIIPINADT  205 (395)
T ss_dssp             G--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG-G-EEEEEEEEE--SS----EEEEEETTT
T ss_pred             ccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC-CceEEEEeeccccCCCceEEEEEEECCC
Confidence            2      234677888862    122   5788999999999998852111 001  11112224566666665 3211 


Q ss_pred             C-------------------CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCc
Q 046899          300 K-------------------SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH  360 (407)
Q Consensus       300 ~-------------------~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~  360 (407)
                      |                   +.+++.+ .+..+|++.+.+.+..............+.+-+             ......
T Consensus       206 G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~-------------~~~~~~  271 (395)
T PF08596_consen  206 GESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVP-------------TISRNG  271 (395)
T ss_dssp             --B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEE-------------EE-EEE
T ss_pred             CCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEe-------------ecccCC
Confidence            0                   1133333 478899999888665443331111111111100             000234


Q ss_pred             cceeeeEEEeeeEEEeeccc
Q 046899          361 GRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       361 ~~~i~~~~~d~~i~iwd~~~  380 (407)
                      +..|++...+|.|+++.+.+
T Consensus       272 ~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  272 GYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             EEEEEEEETTSEEEEEETTT
T ss_pred             ceEEEEEECCCcEEEEECCC
Confidence            56788888999999998864

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.63  E-value=0.005  Score=44.75  Aligned_cols=103  Identities=11%  Similarity=0.130  Sum_probs=69.0

Q ss_pred             EEEEEE---CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          197 VEDVQF---CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       197 v~~l~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      |++|++   ..+|.+.|++|+.|..|++|+-..    .+..+ .-.+.|.+++-..  +..|+.+..+|+|-+|+...  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei-~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEI-TETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ--   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEE-ecccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence            455554   446668899999999999998542    34444 3345677777665  47799999999999998653  


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcC---CCCCEEEEeeCCCeEEE
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGILNI  315 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~~ll~s~~~d~~i~v  315 (407)
                            .+...+.. ..+.++++..   +|..-|++|-.+|.|-+
T Consensus        73 ------RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 ------RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ------eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence                  44455543 3366665543   33333469988998753

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.00049  Score=64.93  Aligned_cols=120  Identities=12%  Similarity=0.171  Sum_probs=87.2

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      ...|.--++...+ .+++.|+.-|.+.+|+-..+... .....+-.+.+..++.++ +..++|.|+..|.|.++-+....
T Consensus        33 ~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   33 PARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             cceEEEEEeecCC-ceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence            3344444555556 78999999999999997766631 222233455666777888 78899999999999999887722


Q ss_pred             CCCCCCce--eee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          274 SDGVGSPI--HKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       274 ~~~~~~~~--~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      .   ....  ..+ +.|...|++++|++++..++ +|...|+|.+-.+..
T Consensus       110 p---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 P---RDLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS  155 (726)
T ss_pred             C---CcceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence            1   1111  111 23778999999999999886 999999999988876

>smart00320 WD40 WD40 repeats

Probab=97.60  E-value=0.00018  Score=41.17  Aligned_cols=38  Identities=32%  Similarity=0.570  Sum_probs=33.3

Q ss_pred             CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 046899          185 GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD  223 (407)
Q Consensus       185 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  223 (407)
                      +++..+..|...|.++.|++.+ ..+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            3456677889999999999988 7899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.55  E-value=0.00022  Score=40.82  Aligned_cols=39  Identities=33%  Similarity=0.789  Sum_probs=33.4

Q ss_pred             CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      .++...+..|...|.+++|++++.. +++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKY-LASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCE-EEEecCCCeEEEcC
Confidence            4567778889999999999998874 57999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.49  E-value=0.0074  Score=52.59  Aligned_cols=116  Identities=13%  Similarity=0.180  Sum_probs=74.5

Q ss_pred             CCCCCCCcCceeeEeecccCE--EEEEECCCCCcEEEEEeC-----CCcEEEEEcCCCCCCceeeecccCcceEEEEecC
Q 046899          177 KPLESPSIGARGKYLGHEDTV--EDVQFCPSSAQEFCSVGD-----DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP  249 (407)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v--~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~  249 (407)
                      .++|..+++..+.+....+.-  -.-.|+++| .+|++.-.     .|.|-+||...+- ..+..+..|.-.-..+.+.|
T Consensus        31 ~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~-~ri~E~~s~GIGPHel~l~p  108 (305)
T PF07433_consen   31 LVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAARGY-RRIGEFPSHGIGPHELLLMP  108 (305)
T ss_pred             EEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECcCCc-EEEeEecCCCcChhhEEEcC
Confidence            345555555555554332222  135799999 66666533     5889999999332 24667777776677888999


Q ss_pred             CCCCEEEEEe------------------CCCcEEEEeCCCCCCCCCCCceee--e--cCCCCCEEEEEEcCCCC
Q 046899          250 HDVNLILTGS------------------ADNSIHMFDRRKLTSDGVGSPIHK--F--EGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       250 ~~~~~l~tg~------------------~dg~i~vwd~~~~~~~~~~~~~~~--~--~~h~~~v~~v~~~~~~~  301 (407)
                       |+..|+++.                  .+-++.+.|.++      ++.+..  +  ..|..+|+.+++.++|.
T Consensus       109 -DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~  175 (305)
T PF07433_consen  109 -DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS------GALLEQVELPPDLHQLSIRHLAVDGDGT  175 (305)
T ss_pred             -CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC------CceeeeeecCccccccceeeEEecCCCc
Confidence             887777653                  122334444454      666665  4  23778899999999987

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.46  E-value=0.015  Score=49.80  Aligned_cols=114  Identities=13%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCCCc-eeee------cccCcceEEEEecCCCCCEEEEEeCCCc
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GSTPA-VKVE------KAHNADIHCVDWNPHDVNLILTGSADNS  263 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~-~~~~------~~~~~~v~~l~~~~~~~~~l~tg~~dg~  263 (407)
                      +...+..++|+|.+ +.|+.+-+..-..+|.++.  ..... ....      ......+.++.++|..+.+++....+..
T Consensus       116 ~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~  194 (248)
T PF06977_consen  116 GNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL  194 (248)
T ss_dssp             -SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred             CCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence            45568999999987 4455556666677777764  11101 1111      1233457899999988888888888899


Q ss_pred             EEEEeCCCCCCCCCCCceeeecCCC---------CCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          264 IHMFDRRKLTSDGVGSPIHKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       264 i~vwd~~~~~~~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      |..+|..       ++++..+.-..         ..--.|+|.++|. |+ ..+.-+...++
T Consensus       195 l~~~d~~-------G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LY-IvsEpNlfy~f  247 (248)
T PF06977_consen  195 LLELDRQ-------GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LY-IVSEPNLFYRF  247 (248)
T ss_dssp             EEEE-TT---------EEEEEE-STTGGG-SS---SEEEEEE-TT---EE-EEETTTEEEEE
T ss_pred             EEEECCC-------CCEEEEEEeCCcccCcccccCCccEEEECCCCC-EE-EEcCCceEEEe
Confidence            9999954       67666554322         3578999999997 65 44555555443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.41  E-value=0.00045  Score=56.45  Aligned_cols=107  Identities=14%  Similarity=0.116  Sum_probs=69.4

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC
Q 046899          208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH  287 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h  287 (407)
                      ..++.|+.+|.|.+|....... .......-...|-++--.-.++.+..+++.||.|+.|++..      .+.+.....|
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p------~k~~g~~g~h  143 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP------NKVLGYVGQH  143 (238)
T ss_pred             ceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeecccc------Cceeeeeccc
Confidence            5789999999999999873321 11111111223333322222566889999999999999987      6667666667


Q ss_pred             C-CCEEEEEEcCCCCCEEEEe--eCCCeEEEEeCCCCC
Q 046899          288 S-AAVLCVQWSPDKSSVFGSS--AEDGILNIWDHEKIG  322 (407)
Q Consensus       288 ~-~~v~~v~~~~~~~~ll~s~--~~d~~i~vwd~~~~~  322 (407)
                      + .++..+..+..++.+ +.+  |.|..++.|++....
T Consensus       144 ~~~~~e~~ivv~sd~~i-~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  144 NFESGEELIVVGSDEFL-KIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             cCCCcceeEEecCCceE-Eeeccccchhhhhcchhhhh
Confidence            7 566666555555533 566  777778888777543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.37  E-value=0.02  Score=41.73  Aligned_cols=65  Identities=11%  Similarity=0.147  Sum_probs=42.3

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC---CCEEEEEeCCCcEE
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD---VNLILTGSADNSIH  265 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~~l~tg~~dg~i~  265 (407)
                      ...|.+++-...+  .|+.+..+|+|-+|+-....    .... .+..+.++.+...+   ...|++|-.+|.|-
T Consensus        42 ~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~Rl----WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   42 TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQRL----WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccceEEEEEcCCC--EEEEEecCCEEEEEeCccee----eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3567777766654  69999999999999864433    2222 23335666654312   34788998888774

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.37  E-value=0.00051  Score=66.17  Aligned_cols=114  Identities=17%  Similarity=0.302  Sum_probs=84.4

Q ss_pred             EEEECCCCCcEEEEEe----CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899          199 DVQFCPSSAQEFCSVG----DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       199 ~l~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~  274 (407)
                      -+.|+|.. .+|++++    ..|.|.||- .++++..-.+.   +-.+++++|+| ..-.|+.|-.-|.+.+|....   
T Consensus        20 i~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~---   90 (1416)
T KOG3617|consen   20 ISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNT---   90 (1416)
T ss_pred             ccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCccccc---ceehhhhccCh-HHHHHhhccccceeEEEecCC---
Confidence            35789988 5777765    368888884 44552222222   23356799999 778888998899999999887   


Q ss_pred             CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899          275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ  325 (407)
Q Consensus       275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~  325 (407)
                         .+.-.....|..+|..+.||++|..+ +|+..-|.+.+|.....++++
T Consensus        91 ---~e~htv~~th~a~i~~l~wS~~G~~l-~t~d~~g~v~lwr~d~~g~~q  137 (1416)
T KOG3617|consen   91 ---TETHTVVETHPAPIQGLDWSHDGTVL-MTLDNPGSVHLWRYDVIGEIQ  137 (1416)
T ss_pred             ---ceeeeeccCCCCCceeEEecCCCCeE-EEcCCCceeEEEEeeeccccc
Confidence               44444445699999999999999966 599999999999887554444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.34  E-value=0.033  Score=56.49  Aligned_cols=91  Identities=13%  Similarity=0.242  Sum_probs=56.2

Q ss_pred             EEEEecCCCCCEEEE-----EeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe---eCCCeEE
Q 046899          243 HCVDWNPHDVNLILT-----GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS---AEDGILN  314 (407)
Q Consensus       243 ~~l~~~~~~~~~l~t-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~---~~d~~i~  314 (407)
                      ++|+|-- ||.++|+     ......|+|||.+.       ..-.+-..-...=.+++|-|.|..+ |+-   +.|+.|.
T Consensus       199 ~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg-------~Lns~se~~~~l~~~LsWkPsgs~i-A~iq~~~sd~~Iv  269 (1265)
T KOG1920|consen  199 TSISWRG-DGEYFAVSFVESETGTRKIRVYDREG-------ALNSTSEPVEGLQHSLSWKPSGSLI-AAIQCKTSDSDIV  269 (1265)
T ss_pred             ceEEEcc-CCcEEEEEEEeccCCceeEEEecccc-------hhhcccCcccccccceeecCCCCeE-eeeeecCCCCcEE
Confidence            3588977 8999988     33337999999872       1111111122334578999999844 554   3466799


Q ss_pred             EEeCCCC---CcccccccCCCcccCCCCcCc
Q 046899          315 IWDHEKI---GEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       315 vwd~~~~---~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      ++.-+..   .-...++....++..++|+.+
T Consensus       270 ffErNGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  270 FFERNGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             EEecCCccccccccCCcccccchheeeecCC
Confidence            9974432   222234444555888888776

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.27  E-value=0.0069  Score=59.99  Aligned_cols=127  Identities=17%  Similarity=0.179  Sum_probs=86.3

Q ss_pred             cEEEEE-eCCCcEEEEEcCCCCCCceeeecccCcc-eEEEEecC----CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899          208 QEFCSV-GDDSCLILWDARSGSTPAVKVEKAHNAD-IHCVDWNP----HDVNLILTGSADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       208 ~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~~~----~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                      ++|+.. .....|+-.|+..++  .+.....+... |..++-..    .+...-+.|-.+..+..||+|...    .+++
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GK--VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~----~k~v  567 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGK--VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG----NKLV  567 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCc--EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC----Ccee
Confidence            444433 456789999999998  67777666543 55443321    123445677788999999999732    1222


Q ss_pred             e-eec--CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          282 H-KFE--GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       282 ~-~~~--~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      . ..+  ......+|++-+.+|.  ||.|+.+|.||+||--..+....+++-+.||.++..+.|
T Consensus       568 ~~~~k~Y~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~D  629 (794)
T PF08553_consen  568 DSQSKQYSSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTAD  629 (794)
T ss_pred             eccccccccCCCceEEEecCCce--EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCC
Confidence            1 111  2345688888888886  479999999999995433334567788999999999988

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.13  E-value=0.00058  Score=55.84  Aligned_cols=144  Identities=13%  Similarity=0.120  Sum_probs=83.9

Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC
Q 046899          209 EFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS  288 (407)
Q Consensus       209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~  288 (407)
                      .+...+.||.|+-++++..... .+....+.....-+.    .+.-++.|+.+|.|.+|.....     +........-.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s-~rse~~~~e~~~v~~----~~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~  101 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKES-CRSERFIDEGQRVVT----ASAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGE  101 (238)
T ss_pred             hhccccCCcccccchhhhhhhh-hhhhhhhhcceeecc----cCceEEeecccceEEEecCCcc-----chHHHhhhccc
Confidence            3445567888888888765422 122222332211122    4567899999999999988742     22222222223


Q ss_pred             CCEEEEE-EcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE
Q 046899          289 AAVLCVQ-WSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL  367 (407)
Q Consensus       289 ~~v~~v~-~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~  367 (407)
                      .+|.++- -..++. +..+++.||.|+.|++...+.+.....|..    .++.          .   +...+....|..+
T Consensus       102 e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~----~~~e----------~---~ivv~sd~~i~~a  163 (238)
T KOG2444|consen  102 ESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKPNKVLGYVGQHNF----ESGE----------E---LIVVGSDEFLKIA  163 (238)
T ss_pred             ccceeccccccccc-eeEEeccCCceeeeccccCceeeeeccccC----CCcc----------e---eEEecCCceEEee
Confidence            3343332 222333 557899999999999998777766555542    1110          0   2223335556666


Q ss_pred             --EEeeeEEEeeccc
Q 046899          368 --TMVKVLEIWRMID  380 (407)
Q Consensus       368 --~~d~~i~iwd~~~  380 (407)
                        |.|..++.|++..
T Consensus       164 ~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  164 DTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccchhhhhcchhh
Confidence              8888999998863

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.03  E-value=0.01  Score=55.25  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=80.1

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCc--EEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC--LILWDARSGSTPAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      ..+.++++.+++...... ..+.-..-+|+|+|..++++...||.  |.+.|+..++.+.   +....+.-..=.|+| +
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~sp-d  292 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSP-D  292 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCC-C
Confidence            345666776665544433 23333456899999777777777876  4555766665222   222222223567899 7


Q ss_pred             CCEEEEE-eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe--EEEEeCCCCCc
Q 046899          252 VNLILTG-SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI--LNIWDHEKIGE  323 (407)
Q Consensus       252 ~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~  323 (407)
                      |+.++-. +..|.-.||-+...     +..+..+......-..-.|+|+|++++.....+|.  |.+.|+.+...
T Consensus       293 G~~ivf~Sdr~G~p~I~~~~~~-----g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         293 GSKIVFTSDRGGRPQIYLYDLE-----GSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             CCEEEEEeCCCCCcceEEECCC-----CCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            7766554 44565555544332     23333333332322377899999987655544455  66777666553

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.94  E-value=0.35  Score=45.23  Aligned_cols=78  Identities=13%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL  330 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  330 (407)
                      +....+....++.+.+.+...      .+.   +. ..+++..++.||+|+++ |.-..+|.+.+....-.+....+...
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~------~~~---i~-~~~~i~~iavSpng~~i-Al~t~~g~l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENS------FKQ---ID-SDGPIIKIAVSPNGKFI-ALFTDSGNLWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             CcceEEEEecCCEEEEEEccc------ccc---cc-CCCCeEEEEECCCCCEE-EEEECCCCEEEEECcccceeEEeecC
Confidence            334444444555666555443      111   22 24689999999999965 77788899999886654444444433


Q ss_pred             -CCcccCCCC
Q 046899          331 -KYPIIHPAY  339 (407)
Q Consensus       331 -~~~v~~~~~  339 (407)
                       ..+...+.|
T Consensus       258 ~~~~p~~~~W  267 (410)
T PF04841_consen  258 SKSPPKQMAW  267 (410)
T ss_pred             cCCCCcEEEE
Confidence             223344444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.16  Score=46.97  Aligned_cols=209  Identities=14%  Similarity=0.149  Sum_probs=127.2

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN  164 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  164 (407)
                      .-..++.++...+..++...+..|.+.|..+............                        +....+.+.+.  
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~------------------------P~~~~~~~~~~--  128 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG------------------------PVGLAVDPDGK--  128 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccC------------------------CceEEECCCCC--
Confidence            3456677775566777777778999999666554433322111                        00111111110  


Q ss_pred             Ccccccc--CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-e---eccc
Q 046899          165 SKNASKS--GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-V---EKAH  238 (407)
Q Consensus       165 ~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~  238 (407)
                      ...++..  .++.+.+.|..+.+..........+ ..+++.|++...+++-..++.|.+.|.+...  ... .   ...-
T Consensus       129 ~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~--v~~~~~~~~~~~  205 (381)
T COG3391         129 YVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS--VVRGSVGSLVGV  205 (381)
T ss_pred             EEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc--eecccccccccc
Confidence            0111111  4566777777777777775443344 8899999995466666689999999976654  221 0   1122


Q ss_pred             CcceEEEEecCCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCCceee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          239 NADIHCVDWNPHDVNLILTGSAD---NSIHMFDRRKLTSDGVGSPIHK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      ...-..+.++| ++..+......   +.+...|..+      ...... ...-......+..+|+|..+.+.-+..+.+.
T Consensus       206 ~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~------~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~  278 (381)
T COG3391         206 GTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTAT------GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVS  278 (381)
T ss_pred             CCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCC------ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEE
Confidence            23346788999 77755544433   5888898887      444443 2211114677899999998876656678999


Q ss_pred             EEeCCCCCccccccc
Q 046899          315 IWDHEKIGEKQDYGE  329 (407)
Q Consensus       315 vwd~~~~~~~~~~~~  329 (407)
                      +.|..+.........
T Consensus       279 vid~~~~~v~~~~~~  293 (381)
T COG3391         279 VIDGATDRVVKTGPT  293 (381)
T ss_pred             EEeCCCCceeeeecc
Confidence            999998776665544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.0024  Score=63.40  Aligned_cols=83  Identities=20%  Similarity=0.277  Sum_probs=65.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL  330 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  330 (407)
                      -+..++.|++.|.+..+|++..     -.+...-..-.++|++++|+.+|..+ +.|-.+|.|.+||+.+.+.++.+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg~~l-~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDGSLL-LAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCCcee-ccccCCCcEEEEEccCCcceeeeeec
Confidence            4567899999999999998862     12222222346799999999999955 68888999999999999999999999


Q ss_pred             CCcccCCCC
Q 046899          331 KYPIIHPAY  339 (407)
Q Consensus       331 ~~~v~~~~~  339 (407)
                      ..|.+++-+
T Consensus       172 ~ap~t~vi~  180 (1206)
T KOG2079|consen  172 GAPVTGVIF  180 (1206)
T ss_pred             CCccceEEE
Confidence            988877655

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.90  E-value=0.072  Score=44.80  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=80.8

Q ss_pred             CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899          203 CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH  282 (407)
Q Consensus       203 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  282 (407)
                      .++...+++.|+..+.+.--|..+++  .... ..-...+-+-+.-  -+++++.|...|.+++.+.++      +....
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~--~~We-~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~t------Gs~~w   87 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGN--LIWE-AILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKT------GSQIW   87 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCc--EEee-hhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecc------hhhee
Confidence            34445789999999999999999988  3322 2223333332222  356799999999999999999      87777


Q ss_pred             eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          283 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                      .+..-+.-=......+++. ++-.|+.|++...-|.++...+-...
T Consensus        88 ~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   88 NFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             eeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence            7765333223344566777 55699999999999999877765543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.86  E-value=0.13  Score=49.39  Aligned_cols=191  Identities=13%  Similarity=0.093  Sum_probs=98.6

Q ss_pred             CCCCCCCCCCCcCceeeEeeccc--------------------CE-EEEEECCCCCcEEEEEeCCC--------------
Q 046899          173 GNGDKPLESPSIGARGKYLGHED--------------------TV-EDVQFCPSSAQEFCSVGDDS--------------  217 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~~~~~--------------------~v-~~l~~~~~~~~~l~s~~~dg--------------  217 (407)
                      ++.+..+|..+++.+=.+.....                    .| ...++.+.+ ..++.++.++              
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCC
Confidence            45666778777776655432111                    01 123344444 4666676554              


Q ss_pred             ----cEEEEEcCCCCCCceeeec--ccCc----c---eEEEEecCCCCC---EEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899          218 ----CLILWDARSGSTPAVKVEK--AHNA----D---IHCVDWNPHDVN---LILTGSADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       218 ----~i~iwd~~~~~~~~~~~~~--~~~~----~---v~~l~~~~~~~~---~l~tg~~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                          .|.-.|..+++  .....+  .+..    .   ..-......++.   .++.++.+|.+..+|.++      ++.+
T Consensus       253 ~~~~~l~Ald~~tG~--~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t------G~~~  324 (488)
T cd00216         253 LYTDSIVALDADTGK--VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT------GKLI  324 (488)
T ss_pred             CceeeEEEEcCCCCC--EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC------CcEe
Confidence                79999999988  343332  1210    0   000011111232   678888999999999999      8888


Q ss_pred             eeecCCCCCEEEEEEcCCCCCEEEE-----------------eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcch
Q 046899          282 HKFEGHSAAVLCVQWSPDKSSVFGS-----------------SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDML  344 (407)
Q Consensus       282 ~~~~~h~~~v~~v~~~~~~~~ll~s-----------------~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~  344 (407)
                      ......   ...++.+|  ..+++.                 ...+|.+.-.|+.+++.+=+.......     .   .+
T Consensus       325 W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~-----~---~~  391 (488)
T cd00216         325 SARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIR-----D---SW  391 (488)
T ss_pred             eEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccc-----c---cc
Confidence            765421   11233333  223321                 123577888888877655333221000     0   00


Q ss_pred             hccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899          345 DIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL  393 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  393 (407)
                      +.......+-...  .++.|+.++.||.|+.+|..      +|+.+-++
T Consensus       392 ~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~------tG~~lW~~  432 (488)
T cd00216         392 NIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDAT------TGKELWKF  432 (488)
T ss_pred             ccCCcccCcceEe--cCCeEEEECCCCeEEEEECC------CCceeeEE
Confidence            0000000000011  24678888889999999987      66655443

The alignment model contains an 8-bladed beta-propeller.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.83  E-value=0.024  Score=52.90  Aligned_cols=147  Identities=18%  Similarity=0.191  Sum_probs=87.1

Q ss_pred             cCceeeEeecccCEEEEEECCCCCcEEEEEeCC---CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE-EEEe
Q 046899          184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI-LTGS  259 (407)
Q Consensus       184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~tg~  259 (407)
                      +...+.+......+..-+|+|++..+....-..   ..+.++|+.++..+.+..+.++.   ..-+|+| |++.| ++..
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fsp-DG~~l~f~~~  257 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSP-DGSKLAFSSS  257 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCC-CCCEEEEEEC
Confidence            334444444455677778999985544443332   35999999998865555554444   4568999 65555 5556


Q ss_pred             CCCc--EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE--eCCCCCcccccccCCCccc
Q 046899          260 ADNS--IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW--DHEKIGEKQDYGELKYPII  335 (407)
Q Consensus       260 ~dg~--i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~  335 (407)
                      .||.  |.++|+..      .. +..+..-.+.-..=.|+|+|++|..+.+..|.-.||  |++.... +.+......-.
T Consensus       258 rdg~~~iy~~dl~~------~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~  329 (425)
T COG0823         258 RDGSPDIYLMDLDG------KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS  329 (425)
T ss_pred             CCCCccEEEEcCCC------Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence            6775  55566665      33 333443333333567999999998787777765555  5444332 22222222222


Q ss_pred             CCCCcCc
Q 046899          336 HPAYSSD  342 (407)
Q Consensus       336 ~~~~s~d  342 (407)
                      ...+|||
T Consensus       330 ~p~~Spd  336 (425)
T COG0823         330 NPVWSPD  336 (425)
T ss_pred             CccCCCC
Confidence            6778887

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.83  E-value=0.26  Score=43.87  Aligned_cols=139  Identities=13%  Similarity=0.121  Sum_probs=82.4

Q ss_pred             cCEEEEEECCCCCcEEEEEeC------C---CcEEEEEcC-CCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CCc
Q 046899          195 DTVEDVQFCPSSAQEFCSVGD------D---SCLILWDAR-SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNS  263 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~------d---g~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~  263 (407)
                      ...+.+...|+| .+.++...      +   ..-.+|-+. .+.  .......+-..-+.|+|+| +++.|+.+.. .+.
T Consensus       111 ~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~--~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~  186 (307)
T COG3386         111 NRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGG--VVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANR  186 (307)
T ss_pred             CCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcCCCC--EEEeecCcEEecCceEECC-CCCEEEEEeCCCCe
Confidence            345677888888 44443332      0   111344444 344  3445555556668999999 8877776655 478


Q ss_pred             EEEEeCCCCC-CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-eEEEEeCCCCCcccccccCCCcccCCCC
Q 046899          264 IHMFDRRKLT-SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-ILNIWDHEKIGEKQDYGELKYPIIHPAY  339 (407)
Q Consensus       264 i~vwd~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~~~~  339 (407)
                      |.-|++.... ..........+....+..-.++...+|. +.+++..+| .|.+|+.. ++.+..+.-....+++++|
T Consensus       187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F  262 (307)
T COG3386         187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF  262 (307)
T ss_pred             EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence            8888776210 0000111222333456667788888888 443444443 89999988 7877777665566667666

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.73  E-value=0.0019  Score=62.44  Aligned_cols=109  Identities=20%  Similarity=0.373  Sum_probs=84.2

Q ss_pred             EEEEecCCCCCEEEEEe----CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899          243 HCVDWNPHDVNLILTGS----ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~----~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~  318 (407)
                      +-.+|+| ...+|++++    ..|+|.||-- +      ++|-+.... .-.+++++|||..- +|+.|-.-|.+.+|..
T Consensus        19 ti~SWHP-sePlfAVA~fS~er~GSVtIfad-t------GEPqr~Vt~-P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~   88 (1416)
T KOG3617|consen   19 TISSWHP-SEPLFAVASFSPERGGSVTIFAD-T------GEPQRDVTY-PVHATSLCWHPEEF-VLAQGWEMGVSDVQKT   88 (1416)
T ss_pred             cccccCC-CCceeEEEEecCCCCceEEEEec-C------CCCCccccc-ceehhhhccChHHH-HHhhccccceeEEEec
Confidence            4467888 777887765    3578888843 3      454433321 22367799999876 6689999999999999


Q ss_pred             CCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          319 EKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       319 ~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .+.+.......|..+++.+.||++                  +..++++-.-|.|.+|...
T Consensus        89 ~~~e~htv~~th~a~i~~l~wS~~------------------G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   89 NTTETHTVVETHPAPIQGLDWSHD------------------GTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCceeeeeccCCCCCceeEEecCC------------------CCeEEEcCCCceeEEEEee
Confidence            987777777889999999999999                  8888888888899999875

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.0097  Score=59.33  Aligned_cols=101  Identities=19%  Similarity=0.315  Sum_probs=75.0

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC
Q 046899          208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH  287 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h  287 (407)
                      ..++.|+..|.+...|++..-.+ ...-..-.++|++++|+. +|..++.|-.+|.|.+||+..      +++++.+..|
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~------~k~l~~i~e~  171 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHR------AKILKVITEH  171 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccC------Ccceeeeeec
Confidence            46888888899999998764322 222234467999999998 999999999999999999998      7888888877


Q ss_pred             CCCEEEEEE---cCCCCCEEEEeeCCCeEEEEeCC
Q 046899          288 SAAVLCVQW---SPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       288 ~~~v~~v~~---~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ..+++++-+   ..++. .+.++...|.  +|.+.
T Consensus       172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence            776655543   34455 3347766665  56653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.16  Score=47.05  Aligned_cols=117  Identities=14%  Similarity=0.230  Sum_probs=87.3

Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC---CCcEEEEeCCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA---DNSIHMFDRRKLT  273 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~~  273 (407)
                      -..++.++.+.+.++....++.|.+.|..+..  ..... .-......++++| ++..+..+..   ++.+.+.|..+  
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~--~~~~~-~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t--  149 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT--VLGSI-PVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAAT--  149 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccc--eeeEe-eeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCC--
Confidence            35678888886677777778999999977665  22222 2223567899999 6666665555   68999999988  


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                          .+...+...-..+ ..+++.|+|..++++-..++.|.+.|.......
T Consensus       150 ----~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         150 ----NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             ----CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence                6777776554455 899999999988888888999999997765444

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.65  E-value=0.45  Score=42.37  Aligned_cols=119  Identities=12%  Similarity=0.101  Sum_probs=79.1

Q ss_pred             cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CC---CCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899          184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GS---TPAVKVEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                      +..+..+..+-..-+.|+|+|++..++++=+..+.|.-|++..  +.   ...........+..-.++.+. ++++.+++
T Consensus       152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a  230 (307)
T COG3386         152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAA  230 (307)
T ss_pred             CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEec
Confidence            4444445455556688999999965566666678899988762  11   111222223445556677777 78877655


Q ss_pred             eCCC-cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc-CCCCCEEEEeeCC
Q 046899          259 SADN-SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS-PDKSSVFGSSAED  310 (407)
Q Consensus       259 ~~dg-~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~ll~s~~~d  310 (407)
                      ..+| .|.+|+..       ++++..+......+++++|- |+.+.|++|+...
T Consensus       231 ~~~g~~v~~~~pd-------G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         231 VWGGGRVVRFNPD-------GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ccCCceEEEECCC-------CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            5554 89999987       57888887766778888885 4567777776644

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.61  E-value=0.0092  Score=36.19  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=28.7

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      ....|.+++|+| ..++||.|..+|.|.++.++
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            446799999999 88899999999999999984

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.54  E-value=0.25  Score=41.68  Aligned_cols=138  Identities=12%  Similarity=0.006  Sum_probs=84.9

Q ss_pred             cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEE
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD  246 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  246 (407)
                      +..++..+.+.-.|.++++.+-.-. -...|.+-+.- -| +.++.|...|.+.+-+..++.  ....+..-..--....
T Consensus        26 v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs--~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   26 VVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGS--QIWNFVILETVKVRAQ  100 (354)
T ss_pred             EEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchh--heeeeeehhhhccceE
Confidence            4456666666666777766543221 12334333332 24 578999999999999999997  3444433222112234


Q ss_pred             ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          247 WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       247 ~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      .++ ++.++..|+.|+..+..|.++      ..++...+...+.-.+-+..|-...|+++. ..|.+.--.
T Consensus       101 ~d~-~~glIycgshd~~~yalD~~~------~~cVykskcgG~~f~sP~i~~g~~sly~a~-t~G~vlavt  163 (354)
T KOG4649|consen  101 CDF-DGGLIYCGSHDGNFYALDPKT------YGCVYKSKCGGGTFVSPVIAPGDGSLYAAI-TAGAVLAVT  163 (354)
T ss_pred             EcC-CCceEEEecCCCcEEEecccc------cceEEecccCCceeccceecCCCceEEEEe-ccceEEEEc
Confidence            456 889999999999999999999      788888775444333444556333355333 345443333

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.025  Score=52.25  Aligned_cols=125  Identities=21%  Similarity=0.244  Sum_probs=86.6

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC-------CEEEEEeCCCcEEEEeCCCCCCCCCCCc
Q 046899          208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV-------NLILTGSADNSIHMFDRRKLTSDGVGSP  280 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~~l~tg~~dg~i~vwd~~~~~~~~~~~~  280 (407)
                      -+|.+++.-..|+--|++.++  .+.....+.. |+-+.+.| +.       ..-+.|-.|..|.-||+|...    ...
T Consensus       347 lil~~~~~~~~l~klDIE~GK--IVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~----~~k  418 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGK--IVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQG----KNK  418 (644)
T ss_pred             eEeeCCCCcCcceeeecccce--eeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccC----cce
Confidence            345566667788888999888  5666655555 77777777 32       223456778899999999643    112


Q ss_pred             eeeecCC----CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          281 IHKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       281 ~~~~~~h----~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      +..-++|    ...-.|.+-..+|. | |.||.+|.||+||--..+....+++.+.+|..+..+.|
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG~-I-vvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtad  482 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESGY-I-VVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTAD  482 (644)
T ss_pred             eeeeeccccccccccceeeecCCce-E-EEeecCCcEEeehhhhhhhhhcccccCCceeeEEeecc
Confidence            3222322    23456677666775 4 79999999999997544445678899999999888777

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.44  E-value=0.19  Score=48.53  Aligned_cols=97  Identities=12%  Similarity=0.032  Sum_probs=67.0

Q ss_pred             CCCCCCCCCCC----cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC----------ceeeeccc
Q 046899          173 GNGDKPLESPS----IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP----------AVKVEKAH  238 (407)
Q Consensus       173 ~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~  238 (407)
                      ++.+.++|..+    +..+..+-.-......+.++|+|..+++++..+.+|.+.|+.+....          ..... .-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-ev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-EL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee-cc
Confidence            34566777766    33344444455667889999999666667777999999999875410          11111 12


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                      ...-...+|++ +++...|-.-|..|..||+..
T Consensus       374 GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence            33345788988 788888888999999999875

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.37  E-value=0.015  Score=35.23  Aligned_cols=32  Identities=22%  Similarity=0.656  Sum_probs=28.8

Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      ....|.+++|+| ...++|.|+.+|.|.+|.+.
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            356799999999 89999999999999999984

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.30  E-value=0.12  Score=48.47  Aligned_cols=214  Identities=10%  Similarity=0.094  Sum_probs=100.3

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC-CCCC-------CCCCcEEEE-eccccc-cccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA-DSHP-------DLDQSVVLW-SIQDHV-SALAAE  151 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~-------~~d~~i~~w-~~~~~~-~~~~~~  151 (407)
                      ..-....|.++| +++.++.++ ||.-.|+..........-.+.. .+..       +..++|.++ ++.... ..+...
T Consensus        31 ~~~~p~~ls~np-ngr~v~V~g-~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~  108 (443)
T PF04053_consen   31 CEIYPQSLSHNP-NGRFVLVCG-DGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP  108 (443)
T ss_dssp             -SS--SEEEE-T-TSSEEEEEE-TTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S
T ss_pred             CCcCCeeEEECC-CCCEEEEEc-CCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCC
Confidence            555689999999 888887754 6788888743322211111100 0011       114556664 222211 011111


Q ss_pred             CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC----
Q 046899          152 PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG----  227 (407)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~----  227 (407)
                      . ...-+..|    .++....++.+.+||..+++.++.+...  +|..+.|++++ .+++..+. ..+.+.+....    
T Consensus       109 ~-~~~~If~G----~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g-~~val~t~-~~i~il~~~~~~~~~  179 (443)
T PF04053_consen  109 F-SVEKIFGG----NLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDG-ELVALVTK-DSIYILKYNLEAVAA  179 (443)
T ss_dssp             S--EEEEE-S----SSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHH
T ss_pred             c-ccceEEcC----cEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCC-CEEEEEeC-CeEEEEEecchhccc
Confidence            1 01111112    3444555557999999999999888632  48999999998 67777765 46777665433    


Q ss_pred             -----CCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899          228 -----STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS  302 (407)
Q Consensus       228 -----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  302 (407)
                           -.........-...|.+..|.- + -++.| +.. .++.+  -.       ....++..-..++.=+.+.|....
T Consensus       180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~-d-~fiYt-T~~-~lkYl--~~-------Ge~~~i~~ld~~~yllgy~~~~~~  246 (443)
T PF04053_consen  180 IPEEGVEDAFELIHEISERIKSGCWVE-D-CFIYT-TSN-HLKYL--VN-------GETGIIAHLDKPLYLLGYLPKENR  246 (443)
T ss_dssp             BTTTB-GGGEEEEEEE-S--SEEEEET-T-EEEEE--TT-EEEEE--ET-------TEEEEEEE-SS--EEEEEETTTTE
T ss_pred             ccccCchhceEEEEEecceeEEEEEEc-C-EEEEE-cCC-eEEEE--Ec-------CCcceEEEcCCceEEEEEEccCCE
Confidence                 0001233333367788999975 4 44444 333 67663  22       222233322456777778776665


Q ss_pred             EEEEeeCCCeEEEEeCCC
Q 046899          303 VFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       303 ll~s~~~d~~i~vwd~~~  320 (407)
                      ++ ....|+.|..+.+..
T Consensus       247 ly-~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  247 LY-LIDRDGNVISYELDL  263 (443)
T ss_dssp             EE-EE-TT--EEEEE--H
T ss_pred             EE-EEECCCCEEEEEECH
Confidence            64 677888888887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.02  E-value=0.65  Score=40.80  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=79.7

Q ss_pred             cccccCCCCCCCCCCCCc-----CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc----
Q 046899          167 NASKSGGNGDKPLESPSI-----GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA----  237 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----  237 (407)
                      .+.......+.++.....     +..+.+. -...+.+++|.+   +.++.|.. ....+.|+.++....+.....    
T Consensus       107 ~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~  181 (275)
T PF00780_consen  107 RLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSS  181 (275)
T ss_pred             EEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEEeC-CceEEEecCCCCceEEeCccCCcch
Confidence            334444446666554332     3334443 347788999984   45777764 458888998776322211111    


Q ss_pred             ------cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee--eecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          238 ------HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH--KFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       238 ------~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                            ...++..+...  ++.+|++-  |..-.+.|..       +++.+  .+... ..+.++++  ..+||++.+  
T Consensus       182 ~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~-------G~~~r~~~i~W~-~~p~~~~~--~~pyli~~~--  245 (275)
T PF00780_consen  182 FKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKN-------GEPSRKSTIQWS-SAPQSVAY--SSPYLIAFS--  245 (275)
T ss_pred             hhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCC-------CCcCcccEEEcC-CchhEEEE--ECCEEEEEC--
Confidence                  11234444443  34555542  4444455554       33333  44443 35567777  446776433  


Q ss_pred             CCeEEEEeCCCCCccccccc
Q 046899          310 DGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       310 d~~i~vwd~~~~~~~~~~~~  329 (407)
                      ++.|.||++.+++.++.+..
T Consensus       246 ~~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  246 SNSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             CCEEEEEECcCCcEEEEEEC
Confidence            46799999999988887764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.97  E-value=0.72  Score=43.18  Aligned_cols=38  Identities=11%  Similarity=0.119  Sum_probs=27.9

Q ss_pred             ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899          186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR  225 (407)
Q Consensus       186 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  225 (407)
                      .+..+.-..+.+-++.|..+.  .|+....||.+++||+.
T Consensus        72 ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   72 LLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCC
Confidence            333333233789999998865  46677789999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.87  E-value=1.3  Score=39.98  Aligned_cols=116  Identities=11%  Similarity=0.139  Sum_probs=64.4

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~  274 (407)
                      .+.++...  + ++++.|.....+.++..+........ ........++++.+-+ +++.++.++.+|.+.++.......
T Consensus       131 ~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~  206 (321)
T PF03178_consen  131 YITSLSVF--K-NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIP  206 (321)
T ss_dssp             SEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-S
T ss_pred             EEEEEecc--c-cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCc
Confidence            56666655  3 57888888888888866542211111 2223355688888886 446999999999999998763221


Q ss_pred             CCC-CC-c---eeeecCCCCCEEEE---EEcC--CCCC-----EEEEeeCCCeEEEE
Q 046899          275 DGV-GS-P---IHKFEGHSAAVLCV---QWSP--DKSS-----VFGSSAEDGILNIW  316 (407)
Q Consensus       275 ~~~-~~-~---~~~~~~h~~~v~~v---~~~~--~~~~-----ll~s~~~d~~i~vw  316 (407)
                      ... +. .   ...+. ....|+++   .+.|  .+..     .++-++.+|.|-+.
T Consensus       207 ~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  207 NSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             STTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            111 22 2   22333 34568888   5555  2222     23467788988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.82  E-value=0.27  Score=48.09  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             cCEEEEEECCCCCcEEEEEe-----CCC--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC------
Q 046899          195 DTVEDVQFCPSSAQEFCSVG-----DDS--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD------  261 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d------  261 (407)
                      ..+...+++|+|....++..     .|.  .|.+++.. +.  ......+  .....-.|+| ++..+++....      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~--~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GV--AVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Cc--ceeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence            46778899999944444432     244  45555542 22  1111222  2377889999 77767666432      


Q ss_pred             ------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          262 ------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       262 ------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                            +.+.+.++..      ++...   .....|..++|||||.++.+..  ++.|.+
T Consensus       424 ~~~~~~gql~~~~vd~------ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V  472 (591)
T PRK13616        424 IRDPATGQLARTPVDA------SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL  472 (591)
T ss_pred             eccCCCceEEEEeccC------chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence                  2232233332      22221   2345799999999999885544  477777

>PHA02713 hypothetical protein; Provisional

Probab=95.62  E-value=0.41  Score=46.83  Aligned_cols=96  Identities=8%  Similarity=0.019  Sum_probs=54.2

Q ss_pred             cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC------cEEEEeCCC-CCCCCCCCceeeecCCCCC
Q 046899          218 CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN------SIHMFDRRK-LTSDGVGSPIHKFEGHSAA  290 (407)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg------~i~vwd~~~-~~~~~~~~~~~~~~~h~~~  290 (407)
                      .+..||.++.+......+....... +++..  ++.+.+.|+.++      .+..||.++ ..    +..+..+......
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~  505 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA  505 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc
Confidence            4778888877632222221111111 22222  567777777542      467899886 33    6666666544433


Q ss_pred             EEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCc
Q 046899          291 VLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGE  323 (407)
Q Consensus       291 v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~  323 (407)
                      ...+.+  ++. |++.||.|+  ++..||+.+.+-
T Consensus       506 ~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        506 LHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             ceeEEE--CCE-EEEEeeecceeehhhcCcccccc
Confidence            333333  444 888999888  677777776543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.60  E-value=0.14  Score=48.01  Aligned_cols=143  Identities=12%  Similarity=0.099  Sum_probs=75.4

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEE-eCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF-DRR  270 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vw-d~~  270 (407)
                      ........+.++|.| +.++. ..||.-.++.....+   ...    .+....++|.+ .+ .+|+-...+.|.++ +..
T Consensus        30 ~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r---~k~----~G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR---NKA----FGSGLSFVWSS-RN-RYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             E-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTE---EEE----EEE-SEEEE-T-SS-EEEEE-TTS-EEEEETTE
T ss_pred             CCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCc---ccc----cCceeEEEEec-Cc-cEEEEECCCeEEEEEcCc
Confidence            344557899999999 66666 457888888733222   111    23445688987 54 46776778899996 333


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  350 (407)
                      .       .....++. ...+..+-.   |..| ...+ ++.|.+||..+.+.+.++....  |..+.||++        
T Consensus        99 ~-------~~~k~i~~-~~~~~~If~---G~LL-~~~~-~~~i~~yDw~~~~~i~~i~v~~--vk~V~Ws~~--------  155 (443)
T PF04053_consen   99 N-------EVVKSIKL-PFSVEKIFG---GNLL-GVKS-SDFICFYDWETGKLIRRIDVSA--VKYVIWSDD--------  155 (443)
T ss_dssp             E--------TT------SS-EEEEE----SSSE-EEEE-TTEEEEE-TTT--EEEEESS-E---EEEEE-TT--------
T ss_pred             c-------ccceEEcC-CcccceEEc---CcEE-EEEC-CCCEEEEEhhHcceeeEEecCC--CcEEEEECC--------
Confidence            2       33334432 123444433   7744 3444 4589999999998888877542  566777666        


Q ss_pred             eeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          351 LTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       351 ~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                +..|+-.+ +..+.|.+.+
T Consensus       156 ----------g~~val~t-~~~i~il~~~  173 (443)
T PF04053_consen  156 ----------GELVALVT-KDSIYILKYN  173 (443)
T ss_dssp             ----------SSEEEEE--S-SEEEEEE-
T ss_pred             ----------CCEEEEEe-CCeEEEEEec
Confidence                      55555555 4477787775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.45  E-value=0.68  Score=43.53  Aligned_cols=117  Identities=17%  Similarity=0.180  Sum_probs=68.8

Q ss_pred             EEEEEECCCCCcEEEEEeCCC----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC----------
Q 046899          197 VEDVQFCPSSAQEFCSVGDDS----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN----------  262 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg----------  262 (407)
                      +...+++|++..++++-+..|    .|+++|+.+++  .+..... ......+.|.+ ++..|+....+.          
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--~l~d~i~-~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--FLPDGIE-NPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--EEEEEEE-EEESEEEEECT-TSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--CcCCccc-ccccceEEEeC-CCCEEEEEEeCcccccccCCCC
Confidence            446788999944444444444    49999999986  2322111 11223499999 656554443222          


Q ss_pred             -cEEEEeCCCCCCCCCCCceeeecCCCC--CEEEEEEcCCCCCEEEEeeCCC---eEEEEeCCCC
Q 046899          263 -SIHMFDRRKLTSDGVGSPIHKFEGHSA--AVLCVQWSPDKSSVFGSSAEDG---ILNIWDHEKI  321 (407)
Q Consensus       263 -~i~vwd~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~ll~s~~~d~---~i~vwd~~~~  321 (407)
                       .|+.|.+.+..    .+-...+.....  ....+..++++++|+++.....   .+.+.|+...
T Consensus       202 ~~v~~~~~gt~~----~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  202 RQVYRHKLGTPQ----SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEEEETTS-G----GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             cEEEEEECCCCh----HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence             37888887632    121233333222  2678899999999887665544   4778888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.43  E-value=0.067  Score=31.43  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=27.6

Q ss_pred             cCEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCC
Q 046899          195 DTVEDVQFCPSSA--QEFCSVGDDSCLILWDARSG  227 (407)
Q Consensus       195 ~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~  227 (407)
                      +.|.+++|+|...  .+|+-+-.-|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999998664  68888888899999999953

It contains a characteristic DLL sequence motif.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.41  E-value=1.5  Score=39.13  Aligned_cols=115  Identities=13%  Similarity=0.131  Sum_probs=67.8

Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCceeeeccc----------CcceEEEEecCCCCCEEEEE--eCCC-------cEEEEeC
Q 046899          209 EFCSVGDDSCLILWDARSGSTPAVKVEKAH----------NADIHCVDWNPHDVNLILTG--SADN-------SIHMFDR  269 (407)
Q Consensus       209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~l~~~~~~~~~l~tg--~~dg-------~i~vwd~  269 (407)
                      .++-.+.+|.|+--|+.............-          .+.-.-+++++..+++++.-  +.+|       .|-++|+
T Consensus       197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            444467889998888876552222221110          11223467776333333322  1122       4777888


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEE-EeeCCCeEEEEeCCCCCcccccccC
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG-SSAEDGILNIWDHEKIGEKQDYGEL  330 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~-s~~~d~~i~vwd~~~~~~~~~~~~~  330 (407)
                      .+      .+.+..+.. ..++.+|+.+.+.+-+|. ....++.+.+||..+++.+.++++.
T Consensus       277 ~t------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  277 KT------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             TT------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             CC------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            88      888888874 356889999988765553 4456899999999999888887653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.38  E-value=0.071  Score=31.30  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=28.5

Q ss_pred             CceEEEEEeCCCC--eEEEEeeCCCcEEEEeCcCC
Q 046899           84 GEVNRIRELPQNS--KIVATHTDSPDVLIWDVEAQ  116 (407)
Q Consensus        84 ~~v~~l~~~~~~~--~~l~tg~~dg~i~vwd~~~~  116 (407)
                      |.|.+++|+|.++  ++|+-+-.-|.|.|+|+.+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            5789999998666  79999988899999999853

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.28  E-value=0.42  Score=46.53  Aligned_cols=118  Identities=19%  Similarity=0.277  Sum_probs=74.2

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec--CCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN--PHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      ...-+.-+.-+ ..-++-+....+.|||.+.+.......+ ...+.|..++|.  | +++.+++.|..+.|.+|--....
T Consensus        31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccchh
Confidence            33444444444 3333344456799999998773222222 457889999994  5 77888888889999998642111


Q ss_pred             ---CCCCCCceeee--cCCC-CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          274 ---SDGVGSPIHKF--EGHS-AAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       274 ---~~~~~~~~~~~--~~h~-~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                         ......++.++  ..|+ .+|.+..|.++|..+  .|+ ++.+.|+|-.
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv--V~s-GNqlfv~dk~  156 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV--VGS-GNQLFVFDKW  156 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEE--EEe-CCEEEEECCC
Confidence               11114555554  2344 689999999999733  343 5789999854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.13  E-value=0.4  Score=44.53  Aligned_cols=137  Identities=14%  Similarity=0.144  Sum_probs=88.4

Q ss_pred             ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC-------CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcce
Q 046899          170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS-------AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI  242 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  242 (407)
                      +.....+.-.|+..|+.+....-|..-  -+.|.|..       ...| .|-.+..|.--|.|-.... +.. ......+
T Consensus       486 g~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNK-i~v-~esKdY~  560 (776)
T COG5167         486 GGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNK-IKV-VESKDYK  560 (776)
T ss_pred             CCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCc-eee-eeehhcc
Confidence            555556666788889988888877654  57777753       1233 3444555655566643321 111 1122222


Q ss_pred             EEEEecC---CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          243 HCVDWNP---HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       243 ~~l~~~~---~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      +--.|+.   ....++|+|+..|-|++||.-.      -.....+.+-...|..+..+.+|.++||||  ...+.+-|++
T Consensus       561 tKn~Fss~~tTesGyIa~as~kGDirLyDRig------~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~  632 (776)
T COG5167         561 TKNKFSSGMTTESGYIAAASRKGDIRLYDRIG------KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP  632 (776)
T ss_pred             ccccccccccccCceEEEecCCCceeeehhhc------chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence            2222221   1456999999999999999654      233445666778899999999999999887  4788888876

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.10  E-value=0.62  Score=40.02  Aligned_cols=126  Identities=11%  Similarity=0.186  Sum_probs=73.3

Q ss_pred             EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-CcceEEEEecCCCCCEEEEEeCCCcEEEEe
Q 046899          190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NADIHCVDWNPHDVNLILTGSADNSIHMFD  268 (407)
Q Consensus       190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  268 (407)
                      +.+-...+..|+|+|+...++++....+.|.-.+.. ++  .+..+.-. .+..-.|++.. ++.++++--.++.+.+++
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~--vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK--VLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC--EEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence            334455799999999875788888888998888864 55  34443222 34567888876 666666655689999999


Q ss_pred             CCCCCCCCCCCceeeec-----CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          269 RRKLTSDGVGSPIHKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +......-.......+.     .++..+-.++|.|.+..+++ +-...-..++.+..
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNG  148 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEES
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEcc
Confidence            85422100011112221     24567999999999887874 45555566776654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.79  E-value=2.4  Score=36.52  Aligned_cols=193  Identities=8%  Similarity=0.073  Sum_probs=103.4

Q ss_pred             eeEEEeeCCCc--eEEEEEeCCCCeEEEEeeCCC--cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899           75 KKFKTIIHPGE--VNRIRELPQNSKIVATHTDSP--DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAA  150 (407)
Q Consensus        75 ~~~~~~~h~~~--v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~  150 (407)
                      ...+..+|+..  ...+.|.. ++.++-+.+.-|  .|+.+|+.+++......-....-.  .| +.+++          
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg--EG-it~~~----------   99 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG--EG-ITILG----------   99 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E--EE-EEEET----------
T ss_pred             EEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc--ee-EEEEC----------
Confidence            45566677744  55787765 777877777666  699999998875543221111000  00 11110          


Q ss_pred             CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                                   +......-.++...++|..+.+.+.++.- .+.=..++.  ++ ..|+.+.....|+++|..+.+  
T Consensus       100 -------------d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~--dg-~~Li~SDGS~~L~~~dP~~f~--  160 (264)
T PF05096_consen  100 -------------DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS--DG-KRLIMSDGSSRLYFLDPETFK--  160 (264)
T ss_dssp             -------------TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE--CS-SCEEEE-SSSEEEEE-TTT-S--
T ss_pred             -------------CEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc--CC-CEEEEECCccceEEECCcccc--
Confidence                         00011122334445556666666666642 344466773  34 345555556789999988765  


Q ss_pred             ceeeec--ccCc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---------------CCCC
Q 046899          231 AVKVEK--AHNA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---------------HSAA  290 (407)
Q Consensus       231 ~~~~~~--~~~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------h~~~  290 (407)
                      ....+.  ....   .++-+.|-  +|.+.|=.-....|...|..+      ++.+..+..               ...-
T Consensus       161 ~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t------G~V~~~iDls~L~~~~~~~~~~~~~~dV  232 (264)
T PF05096_consen  161 EVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET------GKVVGWIDLSGLRPEVGRDKSRQPDDDV  232 (264)
T ss_dssp             EEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-------BEEEEEE-HHHHHHHTSTTST--TTS-
T ss_pred             eEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC------CeEEEEEEhhHhhhcccccccccccCCe
Confidence            233222  2222   34556665  455555555666777777777      666554421               1356


Q ss_pred             EEEEEEcCCCCCEEEEee
Q 046899          291 VLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       291 v~~v~~~~~~~~ll~s~~  308 (407)
                      .+.||+.|....+++||-
T Consensus       233 LNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  233 LNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEEETTTTEEEEEET
T ss_pred             eEeEeEeCCCCEEEEEeC
Confidence            899999999988988884

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02713 hypothetical protein; Provisional

Probab=94.43  E-value=0.31  Score=47.62  Aligned_cols=103  Identities=6%  Similarity=0.024  Sum_probs=53.9

Q ss_pred             cEEEEEeCCC-----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC--------------------
Q 046899          208 QEFCSVGDDS-----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--------------------  262 (407)
Q Consensus       208 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--------------------  262 (407)
                      .+.+.||.++     .+..||..+.+......+.........+..   ++.+.+.||.++                    
T Consensus       353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccccc
Confidence            6777887654     488899887653221121111111112222   567778887653                    


Q ss_pred             ---cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC------CeEEEEeCCC
Q 046899          263 ---SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED------GILNIWDHEK  320 (407)
Q Consensus       263 ---~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d------~~i~vwd~~~  320 (407)
                         .+..||.++..    +..+..+....... +++.. ++. |++.||.+      ..+..||..+
T Consensus       430 ~~~~ve~YDP~td~----W~~v~~m~~~r~~~-~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        430 SSNKVIRYDTVNNI----WETLPNFWTGTIRP-GVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             ccceEEEECCCCCe----EeecCCCCcccccC-cEEEE-CCE-EEEEeCCCCCCccceeEEEecCCC
Confidence               47778887633    44444332211111 22222 344 67777754      2466788776

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.40  E-value=0.69  Score=42.87  Aligned_cols=123  Identities=15%  Similarity=0.119  Sum_probs=72.6

Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC--------------------C-----------------CCceee
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG--------------------V-----------------GSPIHK  283 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--------------------~-----------------~~~~~~  283 (407)
                      .|+.+.|.+ +...|++|...|.|.+|.....+..+                    .                 ..|..-
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            478899998 77889999999999998643321110                    0                 123333


Q ss_pred             ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc--c------CCCcccCCCCcCcchhccccceeeee
Q 046899          284 FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG--E------LKYPIIHPAYSSDMLDIETKLLTSIG  355 (407)
Q Consensus       284 ~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~s~d~~~~~~~~~~~~~  355 (407)
                      +....++|++++.|.-|  .+|.|..+|.+.|.|++....+..-.  .      ....++.+.|             +++
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF-------------~vm  146 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF-------------SVM  146 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE-------------EEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEE-------------EEE
Confidence            34457899999998666  56899999999999998766554311  1      1122333434             233


Q ss_pred             EeeCcc---ceeeeEEEeeeEEEeecc
Q 046899          356 MHLIHG---RLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       356 ~~~~~~---~~i~~~~~d~~i~iwd~~  379 (407)
                      .+.+.+   -.+++|...|.+.+|.+.
T Consensus       147 ~~~~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  147 TLGGDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             E-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             ecCCCcccceEEEEEeCCCCEEEEEEe
Confidence            443322   246677778888888774

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.38  E-value=0.2  Score=44.51  Aligned_cols=187  Identities=12%  Similarity=0.076  Sum_probs=96.0

Q ss_pred             CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee---ecccCcce-EEEEecCC
Q 046899          175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV---EKAHNADI-HCVDWNPH  250 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v-~~l~~~~~  250 (407)
                      ++.+.|+...+.+.++.-  ..  |.-.-|.++.-|.+-+.||++.-..+....++....   +..-..++ ..-.+.. 
T Consensus       119 SVtVVDl~~~kvv~ei~~--PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-  193 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDT--PG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-  193 (342)
T ss_dssp             EEEEEETTTTEEEEEEEG--TS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-
T ss_pred             eEEEEECCCCceeeeecC--CC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-
Confidence            344556666666555532  12  222335444568888899999999998543221111   11112222 2223333 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC----------CCCEEEEEEcCCCCCEEEEee--C-----C--C
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH----------SAAVLCVQWSPDKSSVFGSSA--E-----D--G  311 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h----------~~~v~~v~~~~~~~~ll~s~~--~-----d--~  311 (407)
                      .+..++--+.+|.|+-.|+....    .+....+..-          .+.-.-+++++...+|++.--  .     |  .
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~----~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt  269 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDS----AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT  269 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSS----EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred             CCCeEEEEecCCEEEEEeccCCc----ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence            34445556889999998887622    1222222210          112234566665544443221  1     1  2


Q ss_pred             eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE-eeeEEEeeccccccCChHHHH
Q 046899          312 ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMIDLIYRPEEEVL  390 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~~~~~~~~~~~~  390 (407)
                      .|-++|+.+.+++.+++-. .++.++..|.|                 ....+++.+. ++.|.|||..      +++.+
T Consensus       270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd-----------------~~P~L~~~~~~~~~l~v~D~~------tGk~~  325 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQD-----------------DKPLLYALSAGDGTLDVYDAA------TGKLV  325 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEE-EEESEEEEESS-----------------SS-EEEEEETTTTEEEEEETT------T--EE
T ss_pred             EEEEEECCCCeEEEEEeCC-CccceEEEccC-----------------CCcEEEEEcCCCCeEEEEeCc------CCcEE
Confidence            4777788888887776632 23444444444                 2445555544 6799999998      67766


Q ss_pred             HHHh
Q 046899          391 AELD  394 (407)
Q Consensus       391 ~~~~  394 (407)
                      +++.
T Consensus       326 ~~~~  329 (342)
T PF06433_consen  326 RSIE  329 (342)
T ss_dssp             EEE-
T ss_pred             eehh
Confidence            5554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.27  E-value=1  Score=42.76  Aligned_cols=121  Identities=13%  Similarity=0.260  Sum_probs=76.3

Q ss_pred             ecccCEEEEEECCCC----CcEEEEEeCCCcEEEEEcCCCCC---Cceeeecc-cCc--c--eEEEEecCCCCCEEEEEe
Q 046899          192 GHEDTVEDVQFCPSS----AQEFCSVGDDSCLILWDARSGST---PAVKVEKA-HNA--D--IHCVDWNPHDVNLILTGS  259 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~-~~~--~--v~~l~~~~~~~~~l~tg~  259 (407)
                      +.-+.|..+.|.|-+    +.+| +......|.+|.+.....   ........ ...  +  -..+.|+| ....|++-.
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT  131 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLT  131 (671)
T ss_pred             eccceeeeeeecCcccCCCCceE-EEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEe
Confidence            344568999999863    3444 455678999999863221   01111111 111  1  13578999 777777666


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          260 ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       260 ~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ....-.+++++...    ......++ -.+.|.|.+|.+||.+|++..+..=.-.+||=.
T Consensus       132 ~~dvSV~~sV~~d~----srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  132 ARDVSVLPSVHCDS----SRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCceeEeeeeeeCC----ceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            65555577777632    23333454 467899999999999987776665566788844

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.24  E-value=4.7  Score=40.07  Aligned_cols=107  Identities=12%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             cEEEEEeCCCcEEEEEcCCC-----------CC-------CceeeecccCcceEEEEec--CCCCCEEEEEeCCCcEEEE
Q 046899          208 QEFCSVGDDSCLILWDARSG-----------ST-------PAVKVEKAHNADIHCVDWN--PHDVNLILTGSADNSIHMF  267 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~-----------~~-------~~~~~~~~~~~~v~~l~~~--~~~~~~l~tg~~dg~i~vw  267 (407)
                      ..|+.+..||.|.+|.+.+-           ..       .+...+ .-...+++++++  . ..++||+++....|.||
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-KSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC-cceEEEEecCCceEEEE
Confidence            68999999999999976320           00       011111 234578999998  6 78899999988888888


Q ss_pred             eCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC-----CCEEEEeeCCCeEEEEeCC
Q 046899          268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK-----SSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       268 d~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-----~~ll~s~~~d~~i~vwd~~  319 (407)
                      -.......  ....... .|..-|-+|.|-++.     .-.+++++-.|.+.+|++.
T Consensus       193 af~l~~~r--~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  193 AFALVDER--FYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEeccccc--ccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            66542110  1111111 256678899997654     1145678889999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.20  E-value=0.42  Score=43.14  Aligned_cols=116  Identities=15%  Similarity=0.096  Sum_probs=72.3

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                      ...++|++|+-. .+ . |+.+. ++.|.+|++...+.-...........+.++...   +++++.|+....+.++..+.
T Consensus        86 ~~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   86 EVKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEET
T ss_pred             eecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEc
Confidence            357889999866 34 4 44443 489999999877711122222233466666664   46999999988888875543


Q ss_pred             CCCCCCCCceeeec--CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          272 LTSDGVGSPIHKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       272 ~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      .     ...+..+.  .....++++.|-+++. .++.+..+|.+.++....
T Consensus       159 ~-----~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  159 E-----NNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             T-----TE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred             c-----CCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence            1     22233222  2345689999986766 446899999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.20  E-value=3.6  Score=37.69  Aligned_cols=143  Identities=16%  Similarity=0.216  Sum_probs=77.3

Q ss_pred             ccCEEEEEECCCCCcEEEE-EeCC---CcEEEEEcCCCCCCceeeecccCcce---EEEEec-CCCCCEEEEEeCCCcEE
Q 046899          194 EDTVEDVQFCPSSAQEFCS-VGDD---SCLILWDARSGSTPAVKVEKAHNADI---HCVDWN-PHDVNLILTGSADNSIH  265 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v---~~l~~~-~~~~~~l~tg~~dg~i~  265 (407)
                      ...+..+.|.+++..+++. ...+   ..+.+.|..++....... ......|   ....+. +.+..++.....+|.-+
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h  261 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH  261 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence            4578899999988313333 2332   347778888776322222 2222222   244543 53566666666788655


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEE-EEEcCCCCCEEEEeeCCC----eEEEEeCCCCCcccccccCCCcccCCCCc
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG----ILNIWDHEKIGEKQDYGELKYPIIHPAYS  340 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~ll~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  340 (407)
                      +|-+...     +.....+....-.|.. +.+++++..|+.++..++    .+..-++..+..+..+......-..+.||
T Consensus       262 ly~~~~~-----~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S  336 (353)
T PF00930_consen  262 LYLYDLD-----GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS  336 (353)
T ss_dssp             EEEEETT-----SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred             EEEEccc-----ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence            5544432     2345566655666755 678888887877777633    55555666224444444333322467777


Q ss_pred             Cc
Q 046899          341 SD  342 (407)
Q Consensus       341 ~d  342 (407)
                      |+
T Consensus       337 pd  338 (353)
T PF00930_consen  337 PD  338 (353)
T ss_dssp             TT
T ss_pred             CC
Confidence            77

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.09  E-value=5.1  Score=37.41  Aligned_cols=129  Identities=12%  Similarity=0.056  Sum_probs=71.0

Q ss_pred             CCCeEEEEeeCCCcEEEEeCcCCCCcc--cc------------cCcCCCCCCC---------CCcEEEEecccccc----
Q 046899           94 QNSKIVATHTDSPDVLIWDVEAQPNRH--AV------------LGAADSHPDL---------DQSVVLWSIQDHVS----  146 (407)
Q Consensus        94 ~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~------------~~~~~~~~~~---------d~~i~~w~~~~~~~----  146 (407)
                      ++.+.|++|+..|.+||++........  .+            ... .+++..         -+.+.+|.+.....    
T Consensus        35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G-~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECG-KFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEec-cccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence            356789999999999999986543111  00            001 111111         45666666632110    


Q ss_pred             ------------ccccCCCCCcccccCCCC--CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEE
Q 046899          147 ------------ALAAEPGSAKSTASGGAN--SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS  212 (407)
Q Consensus       147 ------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s  212 (407)
                                  .+.........-++|...  ..+...+-||.+.+++-+.......+.. ----..+.|.+.. ..|++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t-Dsfvt  191 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT-DSFVT  191 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC-CEEEE
Confidence                        011111112222333333  4455677888888887665443333332 2222356777776 67899


Q ss_pred             EeCCCcEEEEEcC
Q 046899          213 VGDDSCLILWDAR  225 (407)
Q Consensus       213 ~~~dg~i~iwd~~  225 (407)
                      ++.+..|..|...
T Consensus       192 ~sss~~l~~Yky~  204 (418)
T PF14727_consen  192 ASSSWTLECYKYQ  204 (418)
T ss_pred             ecCceeEEEecHH
Confidence            9988899988764

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.07  E-value=0.077  Score=52.34  Aligned_cols=120  Identities=23%  Similarity=0.300  Sum_probs=74.5

Q ss_pred             EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCC--C-ceeeecccCcceEEEEecCC--CCCEEEEEeCCC
Q 046899          190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GST--P-AVKVEKAHNADIHCVDWNPH--DVNLILTGSADN  262 (407)
Q Consensus       190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~--~-~~~~~~~~~~~v~~l~~~~~--~~~~l~tg~~dg  262 (407)
                      .++..+.|..++|-......+.  -.-|.+.+||+..  ++-  . .+.........+.-+.|.|.  +.-++..+..++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            4456677777777322111111  2336778888764  221  0 12222333455566777663  345667777888


Q ss_pred             cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEE-----------EcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQ-----------WSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~-----------~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      .|++.....       ....-+++|...+..++           .+|||. +||+.+.||.+++|.+.
T Consensus       206 ~i~lL~~~r-------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  206 EIRLLNINR-------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ceeEeeech-------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence            999887765       33355666877776665           478998 66899999999988765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.07  E-value=2.5  Score=37.58  Aligned_cols=124  Identities=14%  Similarity=0.242  Sum_probs=63.8

Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL  272 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  272 (407)
                      -.+.+..+..+++| .++++++......-||--...  -..........|..|.|.| ++.+.+++ ..|.|++=+....
T Consensus       143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTE
T ss_pred             CcceeEeEEECCCC-cEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCC
Confidence            44678888889999 788887776666788865433  2334445578899999999 77766654 7888888772110


Q ss_pred             CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899          273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ  325 (407)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~  325 (407)
                      .+. =.+++..+..-.-.+.+++|.+++. ++|+|+ .|.+ +.....++.-+
T Consensus       218 ~~~-w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~  266 (302)
T PF14870_consen  218 GET-WSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQ  266 (302)
T ss_dssp             EEE-E---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-E
T ss_pred             ccc-cccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccce
Confidence            000 0011111212233489999999877 666665 5544 44445544433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.96  E-value=0.35  Score=44.40  Aligned_cols=148  Identities=15%  Similarity=0.140  Sum_probs=69.7

Q ss_pred             CCCCCCCCCCCCcCceeeEeec---ccCEEEEEECCCCCcEEEEEeC--------------------CCcEEEEEcCCCC
Q 046899          172 GGNGDKPLESPSIGARGKYLGH---EDTVEDVQFCPSSAQEFCSVGD--------------------DSCLILWDARSGS  228 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~  228 (407)
                      ..|.+.++|.++.+........   ...-..+-|.|.. +.++|+..                    ..++++||+.+.+
T Consensus       155 g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~  233 (461)
T PF05694_consen  155 GPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK  233 (461)
T ss_dssp             S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred             CCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence            3444556666666666655432   2234567788877 77877643                    4679999999888


Q ss_pred             CCceeeeccc--CcceEEEEe--cCCCCCE-EEEEeCCCcEEEEeCCCCCCCCCCCceeeec-----------------C
Q 046899          229 TPAVKVEKAH--NADIHCVDW--NPHDVNL-ILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-----------------G  286 (407)
Q Consensus       229 ~~~~~~~~~~--~~~v~~l~~--~~~~~~~-l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-----------------~  286 (407)
                        ..+.+.--  ......|.|  +| +..+ ++.+-..++|-.|-......-. .+.+-++.                 .
T Consensus       234 --~~Q~idLg~~g~~pLEvRflH~P-~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~  309 (461)
T PF05694_consen  234 --LLQTIDLGEEGQMPLEVRFLHDP-DANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGA  309 (461)
T ss_dssp             --EEEEEES-TTEEEEEEEEE-SST-T--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-E
T ss_pred             --EeeEEecCCCCCceEEEEecCCC-CccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCccccccccccccc
Confidence              45544322  233556666  45 3333 3333334444444321100000 01122221                 1


Q ss_pred             CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       287 h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                      -..-|++|..|.|.++|.+++-.+|.||.||+......
T Consensus       310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence            13468999999999999999999999999999975544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.93  E-value=3.9  Score=35.56  Aligned_cols=77  Identities=8%  Similarity=0.163  Sum_probs=53.0

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-eeccc-------CcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-VEKAH-------NADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~-------~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      ......++|.|.+ ..|..+-+-.-+.||.+......... ....+       -..|.++.|++..+.+++-+..++.+.
T Consensus       180 N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~  258 (316)
T COG3204         180 NKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLL  258 (316)
T ss_pred             CcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEE
Confidence            4567789999998 56777777777888877643311111 11111       235678899987888888888889888


Q ss_pred             EEeCCC
Q 046899          266 MFDRRK  271 (407)
Q Consensus       266 vwd~~~  271 (407)
                      -.|..-
T Consensus       259 Evd~~G  264 (316)
T COG3204         259 EVDLSG  264 (316)
T ss_pred             EEecCC
Confidence            888874

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.74  E-value=0.26  Score=45.25  Aligned_cols=93  Identities=17%  Similarity=0.270  Sum_probs=58.0

Q ss_pred             CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCC-------
Q 046899          216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGH-------  287 (407)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h-------  287 (407)
                      .+.+.++|+.+++   ...+......+....|+| +++.++-.. ++.|.+.+...      +...+ +..+-       
T Consensus        22 ~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~------~~~~~lT~dg~~~i~nG~   90 (353)
T PF00930_consen   22 KGDYYIYDIETGE---ITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLAT------GQETQLTTDGEPGIYNGV   90 (353)
T ss_dssp             EEEEEEEETTTTE---EEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTT------SEEEESES--TTTEEESB
T ss_pred             ceeEEEEecCCCc---eEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCC------CCeEEeccccceeEEcCc
Confidence            4678999999876   333333356788899999 889888876 67899998765      21111 11110       


Q ss_pred             ---------CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          288 ---------SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       288 ---------~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                               -+.-..+-||||+++|+..--.+..|+.+.+.
T Consensus        91 ~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~  131 (353)
T PF00930_consen   91 PDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP  131 (353)
T ss_dssp             --HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred             cceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence                     11235688999999886566666667766554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.69  E-value=1.1  Score=41.88  Aligned_cols=82  Identities=12%  Similarity=0.155  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC---CCceeeec-----------CCCCCEEEEEEcCCC---CCE
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV---GSPIHKFE-----------GHSAAVLCVQWSPDK---SSV  303 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~---~~~~~~~~-----------~h~~~v~~v~~~~~~---~~l  303 (407)
                      .|..+..++ .|..++..|.+|.+.++=.+....++.   +++.-..+           ...-.+..++|||+.   .+|
T Consensus       105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            567888899 888999889999887765444322111   22211111           112357788999986   445


Q ss_pred             EEEeeCCCeEEEEeCCCCCcc
Q 046899          304 FGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       304 l~s~~~d~~i~vwd~~~~~~~  324 (407)
                       ..-+.|++||+||+...+.+
T Consensus       184 -~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 -VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             -EEEecCcEEEEEecCCcchh
Confidence             46677999999999976655

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.45  E-value=2.2  Score=41.15  Aligned_cols=112  Identities=17%  Similarity=0.203  Sum_probs=63.3

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc--eEEEEecCC-CCCEEEEEe---------CCCcEEEEeCCCCCCC
Q 046899          208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD--IHCVDWNPH-DVNLILTGS---------ADNSIHMFDRRKLTSD  275 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~l~~~~~-~~~~l~tg~---------~dg~i~vwd~~~~~~~  275 (407)
                      ..++.++.++.|.-+|.++++  ...........  -..+.-+|. .+..++.++         .+|.+..+|..+    
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~--~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T----  184 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGK--QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET----  184 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCC--EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC----
Confidence            357777889999999999998  34333222110  001111110 123444443         367889999988    


Q ss_pred             CCCCceeeecCCCC--------------------CE-EEEEEcCCCCCEEEEeeCCC------------------eEEEE
Q 046899          276 GVGSPIHKFEGHSA--------------------AV-LCVQWSPDKSSVFGSSAEDG------------------ILNIW  316 (407)
Q Consensus       276 ~~~~~~~~~~~h~~--------------------~v-~~v~~~~~~~~ll~s~~~d~------------------~i~vw  316 (407)
                        ++.+..+.....                    .| ...++.+.+..++ .++.++                  .|.-.
T Consensus       185 --G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Al  261 (488)
T cd00216         185 --GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVAL  261 (488)
T ss_pred             --CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEE
Confidence              777766643211                    01 1234444445454 555454                  78888


Q ss_pred             eCCCCCcccccc
Q 046899          317 DHEKIGEKQDYG  328 (407)
Q Consensus       317 d~~~~~~~~~~~  328 (407)
                      |..+++..=.+.
T Consensus       262 d~~tG~~~W~~~  273 (488)
T cd00216         262 DADTGKVKWFYQ  273 (488)
T ss_pred             cCCCCCEEEEee
Confidence            999887765443

The alignment model contains an 8-bladed beta-propeller.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.39  E-value=3.4  Score=41.59  Aligned_cols=82  Identities=18%  Similarity=0.287  Sum_probs=54.0

Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC---CCc--e-eee--------cCCCCCEEEEEEcCCC---CC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV---GSP--I-HKF--------EGHSAAVLCVQWSPDK---SS  302 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~---~~~--~-~~~--------~~h~~~v~~v~~~~~~---~~  302 (407)
                      -.|..|..+| +|.+++..|..|.+.+.=.+.....+.   ++.  . +++        ..+...|..+.|||.+   .+
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688999999 999999998877655544433221110   111  1 111        1245689999999974   66


Q ss_pred             EEEEeeCCCeEEEEeCCCCCc
Q 046899          303 VFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       303 ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      |+ .-..|+++|+||+.....
T Consensus       164 l~-vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  164 LV-VLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             EE-EEecCCEEEEEecCCCCC
Confidence            64 667799999999986443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.39  E-value=4.7  Score=39.59  Aligned_cols=103  Identities=14%  Similarity=0.205  Sum_probs=58.6

Q ss_pred             cEEEEEeCC------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc-----EEEEeCCCCCCCC
Q 046899          208 QEFCSVGDD------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS-----IHMFDRRKLTSDG  276 (407)
Q Consensus       208 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~-----i~vwd~~~~~~~~  276 (407)
                      .+.+.||.+      .++..||..+........+..-..... ++.-  ++.+.+.||.|+.     |..||.++..   
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~---  502 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ---  502 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCc---
Confidence            678888854      457889988877432222221122222 3332  5788888888873     7778888743   


Q ss_pred             CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-----eEEEEeCCC
Q 046899          277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----ILNIWDHEK  320 (407)
Q Consensus       277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-----~i~vwd~~~  320 (407)
                       +..+..+......+-.+.   -+..+++.|+.||     +|..||..+
T Consensus       503 -W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  503 -WTMVAPMTSPRSAVGVVV---LGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             -eeEcccCccccccccEEE---ECCEEEEEecccCccccceeEEcCCCC
Confidence             445544443333333333   2333778888775     455565554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.39  E-value=2.2  Score=35.69  Aligned_cols=106  Identities=7%  Similarity=0.097  Sum_probs=69.9

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEE--cCCCCCC---ceeeecc----cCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWD--ARSGSTP---AVKVEKA----HNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~~---~~~~~~~----~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                      .-+.++|+.+...+.+.-+.+-.|.-||  ..++...   .+..++.    .....-.++.+- +|++.++.-..|+|..
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQK  237 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEE
Confidence            3467889877755666667788887777  4444311   1111111    011122345555 7888888888899999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC-CCCEEEEee
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD-KSSVFGSSA  308 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~ll~s~~  308 (407)
                      +|..+      ++.+.+++-....|++.+|--. -..+.+|+.
T Consensus       238 ~dp~t------GK~L~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  238 VDPTT------GKILLEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             ECCCC------CcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence            99999      9999999988999999999643 233344443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.35  E-value=0.9  Score=46.49  Aligned_cols=102  Identities=12%  Similarity=0.090  Sum_probs=73.7

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~  274 (407)
                      ....++.|+|.=+...+.+..|+.|++.-+...... ... .......++++|+| .|..++.|-..|++.-|...-   
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~-v~s-~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l---  229 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQN-VTS-FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL---  229 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhh-hcc-cCcccceeeEEecc-ccceeeEecCCCeEEEeeccc---
Confidence            345678899976667888889999999887655421 222 24456789999999 999999999999999997653   


Q ss_pred             CCCCCceeeecC----CCCCEEEEEEcCCCCCEEEE
Q 046899          275 DGVGSPIHKFEG----HSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       275 ~~~~~~~~~~~~----h~~~v~~v~~~~~~~~ll~s  306 (407)
                          +....+.+    ....|.+|.|-....++++-
T Consensus       230 ----eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  230 ----EIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             ----ceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence                32333322    14679999998877766433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.96  E-value=1.6  Score=37.57  Aligned_cols=102  Identities=15%  Similarity=0.206  Sum_probs=68.8

Q ss_pred             EEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-----CCcEEEEeCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSC-LILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-----DNSIHMFDRR  270 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-----dg~i~vwd~~  270 (407)
                      -..|+|+|.-+.-++.+-.-|+ ..+||....+.+.........-.--.=.|+| ++.+|+..-.     -|.|-|||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence            3457888877666666655554 6788988777443322111111111236889 8998876533     3789999998


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF  304 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll  304 (407)
                      .-     .+.+.++..|.-.-..+.|.+||+.+.
T Consensus       149 ~~-----fqrvgE~~t~GiGpHev~lm~DGrtlv  177 (366)
T COG3490         149 EG-----FQRVGEFSTHGIGPHEVTLMADGRTLV  177 (366)
T ss_pred             cc-----cceecccccCCcCcceeEEecCCcEEE
Confidence            63     577888988988889999999999654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.89  E-value=3.9  Score=35.23  Aligned_cols=119  Identities=13%  Similarity=0.057  Sum_probs=74.0

Q ss_pred             CEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL  272 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  272 (407)
                      -...+.|..++ .++-+.+.-|  .|+.+|+.+++.  ..... ...----.++..  +..+...-=.++...+||..+ 
T Consensus        46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~--~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t-  119 (264)
T PF05096_consen   46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKV--LQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT-  119 (264)
T ss_dssp             EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSE--EEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT-
T ss_pred             cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcE--EEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc-
Confidence            44578886767 7788888766  699999999872  22211 111122234443  334555556688999999998 


Q ss_pred             CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                           .+++.++.- .+.=+.++  .++..|+.|- ....+.++|..+.+....+..
T Consensus       120 -----l~~~~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  120 -----LKKIGTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             -----TEEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-
T ss_pred             -----ceEEEEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEE
Confidence                 788888864 34557777  4667676444 467899999998877766543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.75  E-value=1.4  Score=40.83  Aligned_cols=85  Identities=12%  Similarity=0.196  Sum_probs=59.5

Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC-EEEEEEcCC-----------------
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA-VLCVQWSPD-----------------  299 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~-v~~v~~~~~-----------------  299 (407)
                      ....+.+++.+| ++++.|+...-|.|.++|+..      +..++.+++..+. +.=+.....                 
T Consensus       306 ~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~------~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  306 SKREGESICLSP-SGRLAAVTDSLGRVLLIDVAR------GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             CCceEEEEEECC-CCCEEEEEcCCCcEEEEECCC------ChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            345678999999 889999888889999999998      7888888775432 111111111                 


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          300 KSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       300 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                      ..+|++=.-.-|.|.||.++.+.++..+..
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            123444556689999999999887766543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.63  E-value=0.39  Score=48.88  Aligned_cols=118  Identities=13%  Similarity=0.110  Sum_probs=76.8

Q ss_pred             CEEEEEECCCCCc-EEEEEeCCCcEEEEEcCCCCCCc---ee------eecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          196 TVEDVQFCPSSAQ-EFCSVGDDSCLILWDARSGSTPA---VK------VEKAHNADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       196 ~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~---~~------~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      ++..+...+++.. .++..+.+-.|..||+++-....   ..      ..........++.|+|.=....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4555555666522 23333344578999998754211   11      11122334578899995556677888899999


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +..+....     ..+..+. -...+++++|+|.|.++ +.|-..|++.-|-..-
T Consensus       182 V~~~~~~~-----~~v~s~p-~t~~~Tav~WSprGKQl-~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  182 VKSTKQLA-----QNVTSFP-VTNSQTAVLWSPRGKQL-FIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhh-----hhhcccC-cccceeeEEecccccee-eEecCCCeEEEeeccc
Confidence            99887632     2333443 35678999999999987 5899999999987653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.52  E-value=4.5  Score=37.33  Aligned_cols=109  Identities=13%  Similarity=0.208  Sum_probs=56.8

Q ss_pred             cCEEEEEECCCCCcEEEEEe-----------CCC-cEEEEEcCCC--CCCceeeecccCcceEEEEecCCCCCEEEEEeC
Q 046899          195 DTVEDVQFCPSSAQEFCSVG-----------DDS-CLILWDARSG--STPAVKVEKAHNADIHCVDWNPHDVNLILTGSA  260 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~  260 (407)
                      .....|+|.++| +++++-.           ..+ .|.+++-..+  .......+.........+++.+ ++ +++ +..
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATP   89 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCC
Confidence            345688999999 6666642           223 7777765432  2111223322334557899988 76 444 444


Q ss_pred             CCcEEEEeCCCCC-CCCCCCce-eeecC----CCCCEEEEEEcCCCCCEEEEee
Q 046899          261 DNSIHMFDRRKLT-SDGVGSPI-HKFEG----HSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       261 dg~i~vwd~~~~~-~~~~~~~~-~~~~~----h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                      ....++.|..... .++..+.+ ..+..    +......++|.|+|. |+++-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G  142 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG  142 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence            4433344543211 00001222 22322    234578999999997 444444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.39  E-value=4.8  Score=34.90  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=65.6

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEe-CCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFD-RRKLTS  274 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd-~~~~~~  274 (407)
                      .+...++++++..+.+....++.-.+|-...+.. .....  ....+..-.|++ ++...+....+...+++. ..... 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~--~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~-   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVL--TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT-   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeec--cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc-
Confidence            6788999999943433332333444444433331 12222  233678889999 677776666666666663 22211 


Q ss_pred             CCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEe--eCCCeEEEEeCC
Q 046899          275 DGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSS--AEDGILNIWDHE  319 (407)
Q Consensus       275 ~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~--~~d~~i~vwd~~  319 (407)
                         ...+..- ..-...|+.+++||||.++.+..  ..++.|.+=-+.
T Consensus       100 ---~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen  100 ---GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             ---ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence               2222111 11112899999999999875544  235677766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.26  E-value=2.1  Score=42.04  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=63.6

Q ss_pred             EEEEECCCCCcEEEEEeCC------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc-----EEE
Q 046899          198 EDVQFCPSSAQEFCSVGDD------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS-----IHM  266 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~-----i~v  266 (407)
                      .+++... + .++++||.|      ..+..||.++.+......+....... +++..  ++.+.|+||.||.     |-.
T Consensus       326 ~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~  400 (571)
T KOG4441|consen  326 VGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVEC  400 (571)
T ss_pred             ccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEE
Confidence            4455544 3 688999988      35778898887742222222222221 22222  6788999999874     777


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC------eEEEEeCCCC
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG------ILNIWDHEKI  321 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~------~i~vwd~~~~  321 (407)
                      ||.++..    +..+..+.......-.+.+  +|. |.+.||.|+      ++..||..+.
T Consensus       401 YDp~~~~----W~~va~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  401 YDPVTNK----WTPVAPMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYDPETN  454 (571)
T ss_pred             ecCCCCc----ccccCCCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEcCCCC
Confidence            8887644    4555444332222222222  444 778888554      4567777664

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.21  E-value=1.3  Score=40.78  Aligned_cols=145  Identities=13%  Similarity=0.030  Sum_probs=70.3

Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecc--cCEEEEEE--CCCCCcEEEEEeCCCcEEEEEc-CCCCCCcee-
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHE--DTVEDVQF--CPSSAQEFCSVGDDSCLILWDA-RSGSTPAVK-  233 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~v~~l~~--~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~-  233 (407)
                      .|-....+..+.....+.+||..+.+.++++.-..  .....|.|  .|+...-|+.+....+|..|-- ..++....+ 
T Consensus       208 ~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kV  287 (461)
T PF05694_consen  208 KGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKV  287 (461)
T ss_dssp             T---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred             cCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEE
Confidence            33333334445567889999999999999887432  23556666  4555445666666666666544 333211111 


Q ss_pred             -ee-----------------cccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCceeeecC--------
Q 046899          234 -VE-----------------KAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIHKFEG--------  286 (407)
Q Consensus       234 -~~-----------------~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~--------  286 (407)
                       .+                 ..-..-|+.|..|. |.++|...+ .+|.|+.||+..+..   .+.+.++.-        
T Consensus       288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~---Pkl~gqv~lGG~~~~~~  363 (461)
T PF05694_consen  288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFN---PKLVGQVFLGGSIRKGD  363 (461)
T ss_dssp             EEE--EE--SS---GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS----EEEEEEE-BTTTT-B-
T ss_pred             EECCCcccCcccccccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCC---CcEEeEEEECcEeccCC
Confidence             11                 11134578899999 667776554 589999999987643   222222210        


Q ss_pred             --------CCCCEEEEEEcCCCCCEEEEee
Q 046899          287 --------HSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       287 --------h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                              -.+...-|+.|-||++|.+|.|
T Consensus       364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -TTS------S----EEE-TTSSEEEEE--
T ss_pred             CccccccccCCCCCeEEEccCCeEEEEEee
Confidence                    1123467888889998887766

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.18  E-value=7.5  Score=37.30  Aligned_cols=69  Identities=16%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             EEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCC
Q 046899          199 DVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRR  270 (407)
Q Consensus       199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~  270 (407)
                      .+.|+|.. .+|+.-.....-.+++++..... ++.-....+-|.|.+|.+ ||+.|+.+ +..=.-++||-.
T Consensus       117 GCVWHPk~-~iL~VLT~~dvSV~~sV~~d~sr-VkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  117 GCVWHPKK-AILTVLTARDVSVLPSVHCDSSR-VKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cccccCCC-ceEEEEecCceeEeeeeeeCCce-EEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCc
Confidence            46799988 56666655555566777765532 333335667899999999 66665544 434456789854

>PHA03098 kelch-like protein; Provisional

Probab=91.79  E-value=9.1  Score=37.39  Aligned_cols=104  Identities=5%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             cEEEEEeCC------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC--------cEEEEeCCCCC
Q 046899          208 QEFCSVGDD------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--------SIHMFDRRKLT  273 (407)
Q Consensus       208 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--------~i~vwd~~~~~  273 (407)
                      .+++.||.+      ..+..||..+.+............. .++...  ++.+++.|+.++        .+.+||..+..
T Consensus       391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            677777632      4588999887653222111111111 122222  456777776432        38889987632


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI  321 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  321 (407)
                          +..+..+.........+.+  ++. |++.||.+     +.|.+||+.+.
T Consensus       468 ----W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        468 ----WTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ----eeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCC
Confidence                3333322211111122222  444 66677654     46788887764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.74  E-value=8.2  Score=33.51  Aligned_cols=209  Identities=13%  Similarity=0.136  Sum_probs=109.1

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCc-EEEEeCcCCCCccccc--------CcCCCCCCCCCcEEEEeccccccccccC
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPD-VLIWDVEAQPNRHAVL--------GAADSHPDLDQSVVLWSIQDHVSALAAE  151 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~--------~~~~~~~~~d~~i~~w~~~~~~~~~~~~  151 (407)
                      .-...-..|+|+|..+.-++-+-.-|+ ..++|.+.......+.        +|.-+.++.  .+. |-.+         
T Consensus        65 ~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG--~~L-YATE---------  132 (366)
T COG3490          65 ALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG--RLL-YATE---------  132 (366)
T ss_pred             ecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC--cEE-Eeec---------
Confidence            344556678888877777777766665 5678888776544332        232222221  110 0000         


Q ss_pred             CCCCcccccCCCCCccccccCCCCCCCCCCC-CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEE---------
Q 046899          152 PGSAKSTASGGANSKNASKSGGNGDKPLESP-SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLIL---------  221 (407)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~i---------  221 (407)
                                     .-.-.+.|.|-+||.. ..+.+..+..|.-.-..+.+.++| ..++.+.  |-|..         
T Consensus       133 ---------------ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdfgR~~l  194 (366)
T COG3490         133 ---------------NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDFGRTEL  194 (366)
T ss_pred             ---------------CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCC-cEEEEeC--CceecccccCcccc
Confidence                           0001223334444443 234455666666666788888998 5555543  33333         


Q ss_pred             -----------EEcCCCCCCceeeec--ccCcceEEEEecCCCCCEEEEEeCCCcE-----EEEeCCCCCCCCCCCceee
Q 046899          222 -----------WDARSGSTPAVKVEK--AHNADIHCVDWNPHDVNLILTGSADNSI-----HMFDRRKLTSDGVGSPIHK  283 (407)
Q Consensus       222 -----------wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~dg~i-----~vwd~~~~~~~~~~~~~~~  283 (407)
                                 -|..+++.....++.  .+.-.|..++..+ +++..+.+-..|--     .+=-.+.      ++++.-
T Consensus       195 NldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~------g~~l~~  267 (366)
T COG3490         195 NLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRK------GEPLEF  267 (366)
T ss_pred             chhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccC------CCcCcc
Confidence                       333333311111111  2334567777777 66655554433310     0000011      233333


Q ss_pred             ecC-------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899          284 FEG-------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD  326 (407)
Q Consensus       284 ~~~-------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  326 (407)
                      +..       ....|-+|+.+.+...+.+|+-..+..-+||..++..+..
T Consensus       268 ~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         268 LDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             cCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            321       2346788888877776766777788889999999876543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.50  E-value=0.11  Score=51.34  Aligned_cols=123  Identities=11%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             CEEEEEECC---CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEE-----------ecCCCCCEEEEEeCC
Q 046899          196 TVEDVQFCP---SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD-----------WNPHDVNLILTGSAD  261 (407)
Q Consensus       196 ~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~-----------~~~~~~~~l~tg~~d  261 (407)
                      .+.-+.|.|   .. .++..+-.++.|++-.+....   ...+.+|...+..++           .+| ||..|+.+..|
T Consensus       182 ~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~---~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~d  256 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRAL---RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISD  256 (1283)
T ss_pred             Ccceeeeccccccc-ceeeeccCCCceeEeeechHH---HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecC
Confidence            345555655   33 466677778888887776544   233445665443332           578 99999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeeecCCC-CCEEEEEEcCCC---------CCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          262 NSIHMFDRRKLTSDGVGSPIHKFEGHS-AAVLCVQWSPDK---------SSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       262 g~i~vwd~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~---------~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                      |.+++|.+.-..... ..++...+.|+ .+-.|.-++.+.         .++|-+......+++|.....+++
T Consensus       257 G~v~f~Qiyi~g~~~-~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  257 GSVGFYQIYITGKIV-HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             Cccceeeeeeecccc-HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            999888765422111 35666777776 444444454321         123323334566889988777766

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.25  E-value=1.9  Score=36.05  Aligned_cols=110  Identities=9%  Similarity=0.039  Sum_probs=65.0

Q ss_pred             EEEEEeCCCCeEEEEeeCCCcEEEEe--CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899           87 NRIRELPQNSKIVATHTDSPDVLIWD--VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN  164 (407)
Q Consensus        87 ~~l~~~~~~~~~l~tg~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  164 (407)
                      +.++|..+...+..+-+.+-+|.-||  ..++...              ..-.++|++.....-...|++...-..|   
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------------nr~~i~dlrk~~~~e~~~PDGm~ID~eG---  223 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------------NRKVIFDLRKSQPFESLEPDGMTIDTEG---  223 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCccccc--------------CcceeEEeccCCCcCCCCCCcceEccCC---
Confidence            45666654444555556666676676  3333211              1223455554322222333333332223   


Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV  213 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~  213 (407)
                      ...++.-+.+++..+|..+++.+.+++-....|+|++|--..-.+|++.
T Consensus       224 ~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  224 NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            3356677788888899999999999998899999999975432344444

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.22  E-value=2.2  Score=34.47  Aligned_cols=32  Identities=19%  Similarity=0.490  Sum_probs=27.0

Q ss_pred             CCEEEEEEcCC-----CCCEEEEeeCCCeEEEEeCCC
Q 046899          289 AAVLCVQWSPD-----KSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       289 ~~v~~v~~~~~-----~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      ..|.+++|||.     ++.+||....++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            47999999984     456889999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=90.77  E-value=11  Score=33.05  Aligned_cols=147  Identities=6%  Similarity=0.031  Sum_probs=83.2

Q ss_pred             CccccccCCCCCCCCCCC-CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee---------
Q 046899          165 SKNASKSGGNGDKPLESP-SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV---------  234 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------  234 (407)
                      ..++.|+.+| +.+++.. ........  +...|..+...|+- +.|++-+ |+.+.++++..........         
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            3456666666 7777762 22222222  33349999999977 4555543 5999999998765322110         


Q ss_pred             ---ecccCcceEEEE-ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-CceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          235 ---EKAHNADIHCVD-WNPHDVNLILTGSADNSIHMFDRRKLTSDGVG-SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       235 ---~~~~~~~v~~l~-~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                         .......+...+ -....+...+.......|.+|........  . +..+++.- ...+.+++|.++  .+ +.|. 
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~--f~~~~ke~~l-p~~~~~i~~~~~--~i-~v~~-  155 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS--FSKLLKEISL-PDPPSSIAFLGN--KI-CVGT-  155 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc--ccceeEEEEc-CCCcEEEEEeCC--EE-EEEe-
Confidence               112223344444 11213333444444568998887763110  3 45666654 477899999843  24 4555 


Q ss_pred             CCeEEEEeCCCCCc
Q 046899          310 DGILNIWDHEKIGE  323 (407)
Q Consensus       310 d~~i~vwd~~~~~~  323 (407)
                      .+...+.|+.++..
T Consensus       156 ~~~f~~idl~~~~~  169 (275)
T PF00780_consen  156 SKGFYLIDLNTGSP  169 (275)
T ss_pred             CCceEEEecCCCCc
Confidence            44588899886443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.41  E-value=0.55  Score=27.37  Aligned_cols=32  Identities=9%  Similarity=0.164  Sum_probs=26.3

Q ss_pred             CCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          298 PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       298 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                      |++++|+++...+++|.++|+.+.+.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            57888988888899999999988777666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.83  E-value=0.066  Score=49.16  Aligned_cols=112  Identities=12%  Similarity=0.154  Sum_probs=78.9

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      ++....++|..+++..++.+-..+.+.+||+.+........--.|...  -+.|++ ....++.|...|.+.+++.++  
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~s--ll~wsK-g~~el~ig~~~gn~viynhgt--  148 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKS--LLAWSK-GTPELVIGNNAGNIVIYNHGT--  148 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHH--HHhhcc-CCccccccccccceEEEeccc--
Confidence            345567888888867777778889999999987652111111122222  278999 888999999999999999987  


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                          ...+-..-.|...++++++.+.+..  +.++.|..+.+-
T Consensus       149 ----sR~iiv~Gkh~RRgtq~av~lEd~v--il~dcd~~L~v~  185 (615)
T KOG2247|consen  149 ----SRRIIVMGKHQRRGTQIAVTLEDYV--ILCDCDNTLSVT  185 (615)
T ss_pred             ----hhhhhhhcccccceeEEEeccccee--eecCcHHHHHHh
Confidence                3444444448889999999998863  366666655443

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.40  E-value=1.8  Score=24.72  Aligned_cols=30  Identities=23%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             CCCCEEEEEEcCCCCCEEEEeeCC--CeEEEE
Q 046899          287 HSAAVLCVQWSPDKSSVFGSSAED--GILNIW  316 (407)
Q Consensus       287 h~~~v~~v~~~~~~~~ll~s~~~d--~~i~vw  316 (407)
                      ....-....|+|||++|+-++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445678889999999987777777  766666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=89.29  E-value=5.1  Score=39.47  Aligned_cols=89  Identities=18%  Similarity=0.214  Sum_probs=51.3

Q ss_pred             cceEEEEecCCCCCEEEEEe------CCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--
Q 046899          240 ADIHCVDWNPHDVNLILTGS------ADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--  309 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~------~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--  309 (407)
                      ..+...+++| +++.++...      .|+  .+.+++..       +.......+  ...+.-.|+|+|..|. +.+.  
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-------g~~~~lt~g--~~~t~PsWspDG~~lw-~v~dg~  418 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-------GVAVQVLEG--HSLTRPSWSLDADAVW-VVVDGN  418 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-------CcceeeecC--CCCCCceECCCCCceE-EEecCc
Confidence            4677889999 777665544      243  45555542       222222222  2377889999988664 4431  


Q ss_pred             ----------CCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          310 ----------DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       310 ----------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                                .+.+.+.++..+...+   ..+..|..+.+|||
T Consensus       419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD  458 (591)
T PRK13616        419 TVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRD  458 (591)
T ss_pred             ceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC
Confidence                      2334444554433222   33557999999999

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.25  E-value=7.8  Score=34.08  Aligned_cols=78  Identities=17%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             cccCEEEEEECCCCCcEEEEEe------CCCcEEEEEcCCCCCCceee-e-cccCcceEEEEecCCCC-CEEEEEe-CC-
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVG------DDSCLILWDARSGSTPAVKV-E-KAHNADIHCVDWNPHDV-NLILTGS-AD-  261 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~-~-~~~~~~v~~l~~~~~~~-~~l~tg~-~d-  261 (407)
                      -.+.|+.|.|..+. .++++|.      ....+..||+.+........ . ..-.++|..+.+...+. ++.+.|. .+ 
T Consensus        35 i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g  113 (281)
T PF12768_consen   35 ISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG  113 (281)
T ss_pred             ceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence            45789999998655 6777764      35568899998776211111 0 12357888888854344 3444443 23 


Q ss_pred             -CcEEEEeCCC
Q 046899          262 -NSIHMFDRRK  271 (407)
Q Consensus       262 -g~i~vwd~~~  271 (407)
                       ..|..||-..
T Consensus       114 ~~~l~~~dGs~  124 (281)
T PF12768_consen  114 STFLMKYDGSS  124 (281)
T ss_pred             CceEEEEcCCc
Confidence             3577777665

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.19  E-value=19  Score=33.66  Aligned_cols=156  Identities=12%  Similarity=0.132  Sum_probs=88.3

Q ss_pred             CCCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecCC----CCCEEEEEeCCCcEEEEeCCCCCCC--
Q 046899          204 PSSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNPH----DVNLILTGSADNSIHMFDRRKLTSD--  275 (407)
Q Consensus       204 ~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~~----~~~~l~tg~~dg~i~vwd~~~~~~~--  275 (407)
                      +++...+++|+..|.++||+.......  .......-..+|..+...+.    +...||+ -.-..+.+|.+......  
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            445578999999999999998654421  12222344678888886542    2334444 55677888888442210  


Q ss_pred             -CCCCceeeecCCCC--CEEEEEEcC----CCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccc
Q 046899          276 -GVGSPIHKFEGHSA--AVLCVQWSP----DKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIET  348 (407)
Q Consensus       276 -~~~~~~~~~~~h~~--~v~~v~~~~----~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~  348 (407)
                       +..-.+..+..|.-  ....+..-|    .++..++.=+.||.+.+++-+...-...++..            +     
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~------------l-----  175 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF------------L-----  175 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC------------C-----
Confidence             00112222333322  223333333    33456678899999999997764322333221            0     


Q ss_pred             cceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                        ++.-.++..+.+.+++.+.+-.|.-|+..
T Consensus       176 --lPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  176 --LPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             --CCcCeEEeecCCEEEEecCceeEEEecHH
Confidence              11114444457777777777777777764

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.63  E-value=3.8  Score=37.86  Aligned_cols=119  Identities=12%  Similarity=0.203  Sum_probs=80.8

Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      ..++|.+|.|++|. +.+|.--.++.|.+++....+..  .....+.-...|....|.. + +-+|.-...| +-+|-+.
T Consensus        65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEc
Confidence            45699999999999 88999999999999998533311  1122223345688999986 3 6666666555 6677665


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCC
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEK  320 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~  320 (407)
                      ..     ...++..+.|+..|.=-.|.++.+-++.+.+ ..+++.=+.+++
T Consensus       141 pe-----krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  141 PE-----KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             hh-----hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            43     3556667778888888889988875554444 445555555554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.46  E-value=3.3  Score=34.99  Aligned_cols=77  Identities=6%  Similarity=0.083  Sum_probs=50.4

Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee-ec-------CCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK-FE-------GHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~-~~-------~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      .++..+..   .+.++++-+.+|.+++||+.+.+..-....+.. +.       .....|..+.++.+|.-+ ++-+ +|
T Consensus        13 s~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi-V~ls-ng   87 (219)
T PF07569_consen   13 SPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI-VTLS-NG   87 (219)
T ss_pred             CceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE-EEEe-CC
Confidence            34444443   567899999999999999998332110101111 11       345679999999888855 4555 68


Q ss_pred             eEEEEeCCCC
Q 046899          312 ILNIWDHEKI  321 (407)
Q Consensus       312 ~i~vwd~~~~  321 (407)
                      ....||....
T Consensus        88 ~~y~y~~~L~   97 (219)
T PF07569_consen   88 DSYSYSPDLG   97 (219)
T ss_pred             CEEEeccccc
Confidence            8999997764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.29  E-value=18  Score=32.21  Aligned_cols=111  Identities=14%  Similarity=0.252  Sum_probs=55.5

Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CC-C-CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-GS-T-PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~-~-~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                      -...|..|.|.|++ .+.+ ....|.|++=+... .. . ..........-.+..++|.+ +....++|+ .|.+ +...
T Consensus       185 ~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~  259 (302)
T PF14870_consen  185 SSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVST  259 (302)
T ss_dssp             SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEES
T ss_pred             ccceehhceecCCC-CEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeC
Confidence            35689999999998 5444 44889998877221 11 0 00111112233478999998 666666665 4544 3333


Q ss_pred             CCCCCCCCCCceeee---cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          270 RKLTSDGVGSPIHKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      ..      ++.-...   ..-...++.|.|.+..+ -| ..+.+|.|--|
T Consensus       260 Dg------GktW~~~~~~~~~~~n~~~i~f~~~~~-gf-~lG~~G~ll~~  301 (302)
T PF14870_consen  260 DG------GKTWQKDRVGENVPSNLYRIVFVNPDK-GF-VLGQDGVLLRY  301 (302)
T ss_dssp             ST------TSS-EE-GGGTTSSS---EEEEEETTE-EE-EE-STTEEEEE
T ss_pred             CC------CccceECccccCCCCceEEEEEcCCCc-eE-EECCCcEEEEe
Confidence            33      3333322   23345688898876655 45 34568877554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.01  E-value=29  Score=34.37  Aligned_cols=75  Identities=20%  Similarity=0.387  Sum_probs=45.5

Q ss_pred             cccCEEEEEEC--CCCCcEEEEEeCCCcEEEEEcC-----CCC--CCceee--ecccC-cceEEEEecCCCCCEEEEEeC
Q 046899          193 HEDTVEDVQFC--PSSAQEFCSVGDDSCLILWDAR-----SGS--TPAVKV--EKAHN-ADIHCVDWNPHDVNLILTGSA  260 (407)
Q Consensus       193 ~~~~v~~l~~~--~~~~~~l~s~~~dg~i~iwd~~-----~~~--~~~~~~--~~~~~-~~v~~l~~~~~~~~~l~tg~~  260 (407)
                      ..+.|.++.|.  |++ +.+.+.|-.+.|.++--.     ...  ...+..  +..++ .+|....|.+ +|.+++..  
T Consensus        71 ~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--  146 (631)
T PF12234_consen   71 EDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--  146 (631)
T ss_pred             CCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--
Confidence            45678888874  567 556666667888887542     111  111221  23343 5788999998 77655543  


Q ss_pred             CCcEEEEeCCC
Q 046899          261 DNSIHMFDRRK  271 (407)
Q Consensus       261 dg~i~vwd~~~  271 (407)
                      +..+.|+|-..
T Consensus       147 GNqlfv~dk~~  157 (631)
T PF12234_consen  147 GNQLFVFDKWL  157 (631)
T ss_pred             CCEEEEECCCc
Confidence            35688887544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.90  E-value=0.12  Score=47.52  Aligned_cols=133  Identities=13%  Similarity=0.146  Sum_probs=87.8

Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      .......|-| .+.-++.++.+..+..||-..       +....+.. .+....++|.-++..+++.+-..+.+.+||+.
T Consensus        35 v~pi~~~w~~-e~~nlavaca~tiv~~YD~ag-------q~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n  105 (615)
T KOG2247|consen   35 VGPIIHRWRP-EGHNLAVACANTIVIYYDKAG-------QVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN  105 (615)
T ss_pred             cccceeeEec-CCCceehhhhhhHHHhhhhhc-------ceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence            3344677888 444488888888999999764       44444442 44567888988888777777888999999998


Q ss_pred             CCCccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhccc
Q 046899          320 KIGEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKS  398 (407)
Q Consensus       320 ~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~  398 (407)
                      +.. .+.++. ....-.-..|++-                  ...++.+...+.+.|++-.      +...+..+..|..
T Consensus       106 ~ey-tqqLE~gg~~s~sll~wsKg------------------~~el~ig~~~gn~viynhg------tsR~iiv~Gkh~R  160 (615)
T KOG2247|consen  106 SEY-TQQLESGGTSSKSLLAWSKG------------------TPELVIGNNAGNIVIYNHG------TSRRIIVMGKHQR  160 (615)
T ss_pred             hhh-HHHHhccCcchHHHHhhccC------------------CccccccccccceEEEecc------chhhhhhhccccc
Confidence            732 233322 1111111344432                  3445555678889999887      6666667666888


Q ss_pred             ceeEeecc
Q 046899          399 HIFGCDKS  406 (407)
Q Consensus       399 ~v~~~~~s  406 (407)
                      .++++++.
T Consensus       161 Rgtq~av~  168 (615)
T KOG2247|consen  161 RGTQIAVT  168 (615)
T ss_pred             ceeEEEec
Confidence            88887763

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.82  E-value=15  Score=30.64  Aligned_cols=106  Identities=11%  Similarity=0.230  Sum_probs=64.7

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---C---cEEEE-eCCCCCCCCCCCc
Q 046899          208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---N---SIHMF-DRRKLTSDGVGSP  280 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g---~i~vw-d~~~~~~~~~~~~  280 (407)
                      .+|++ ...+.|.+|++.+...+....+. .-+.|..+.++. .|++++|--.+   .   .+|+| +-+....+  ..+
T Consensus        30 ~Lfva-~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~--~~~  104 (215)
T PF14761_consen   30 ALFVA-ASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE--NSP  104 (215)
T ss_pred             eEEEE-cCCCEEEEEEcccCCCceeEEEc-chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc--CCc
Confidence            34444 56788999999955544455553 448899999999 89999985332   2   55664 22211000  111


Q ss_pred             ee-----------------------eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          281 IH-----------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       281 ~~-----------------------~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      +.                       ++. -..++.+++-.|-...|+ .|+ ++++.+|.+...
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence            11                       112 144678888888655465 454 678999998753

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.26  E-value=10  Score=35.40  Aligned_cols=86  Identities=14%  Similarity=0.208  Sum_probs=54.0

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcce-EEEEecCCC----------------CC-
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI-HCVDWNPHD----------------VN-  253 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~l~~~~~~----------------~~-  253 (407)
                      .....+.+|+.+|.+ .+.++...-|+|.++|+.++.  .++..++..+.= .-+......                .. 
T Consensus       305 D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~--vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  305 DSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGI--VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             cCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCCh--hhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            345678899999998 777777677999999999886  454544433211 101110000                11 


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899          254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG  286 (407)
Q Consensus       254 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  286 (407)
                      +++-+-.-|.|.||.++.      +..+..+..
T Consensus       382 LvIyaprRg~lEvW~~~~------g~Rv~a~~v  408 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQ------GPRVAAFNV  408 (415)
T ss_pred             EEEEeccCCeEEEEecCC------CCEEEEEEe
Confidence            223345678899999988      666666643

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.04  E-value=27  Score=32.78  Aligned_cols=117  Identities=16%  Similarity=0.122  Sum_probs=59.6

Q ss_pred             EEEEEECCCCCcEEEEEeCCC---cEEEEEcCCC---CCCceeeecccCcce-EEEEecCCCCCEEEEEe---CCCcEEE
Q 046899          197 VEDVQFCPSSAQEFCSVGDDS---CLILWDARSG---STPAVKVEKAHNADI-HCVDWNPHDVNLILTGS---ADNSIHM  266 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~---~~~~~~~~~~~~~~v-~~l~~~~~~~~~l~tg~---~dg~i~v  266 (407)
                      ...+..++++..+++......   .+.+.|+...   .. ....+......+ ..+...  ++.+++...   ..+.|.-
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~-~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~  305 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA-KPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVA  305 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEE
T ss_pred             EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC-CcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEE
Confidence            567888999855555554433   4788888764   21 223333333333 334433  344444332   2357777


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCC
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHE  319 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~  319 (407)
                      .++..+..   ..-...+..+...+.-..+...+.+|++..-.++  .|+++|+.
T Consensus       306 ~~l~~~~~---~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  306 VDLADPSP---AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EETTSTSG---GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             eccccccc---ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            78777321   0112255556654333333445566776776665  47888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.42  E-value=7.6  Score=38.66  Aligned_cols=114  Identities=10%  Similarity=0.105  Sum_probs=69.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCC-------C--C-----CCCCceeeecCCCCCEEEEEEc--CCCCCEEEEeeCCCeEE
Q 046899          251 DVNLILTGSADNSIHMFDRRKLT-------S--D-----GVGSPIHKFEGHSAAVLCVQWS--PDKSSVFGSSAEDGILN  314 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~-------~--~-----~~~~~~~~~~~h~~~v~~v~~~--~~~~~ll~s~~~d~~i~  314 (407)
                      +...|+.+.+||.|.+|.++...       .  +     ..-+|...+. -...+++++++  ...+ ++|.++....|.
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-lIAVSsNs~~VT  190 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-LIAVSSNSQEVT  190 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-EEEEecCCceEE
Confidence            45688889999999999652110       0  0     0012334444 24588999998  5555 678888888888


Q ss_pred             EEeCCCCCcc-cc--cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          315 IWDHEKIGEK-QD--YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       315 vwd~~~~~~~-~~--~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      ||-+...... ..  -..+...|.+++|-++-           .-..|| ..|++.+..|.+-+|++
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~-----------~d~~G~-v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDD-----------LDPNGH-VKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCC-----------CCCccc-eEEEEEeccCcEEEEEE
Confidence            8876652111 11  11245556677774431           111233 57889999998888777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA03098 kelch-like protein; Provisional

Probab=86.33  E-value=7.4  Score=38.02  Aligned_cols=105  Identities=10%  Similarity=0.059  Sum_probs=52.9

Q ss_pred             cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC------CcEEEEeCCCCCCCC
Q 046899          208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD------NSIHMFDRRKLTSDG  276 (407)
Q Consensus       208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d------g~i~vwd~~~~~~~~  276 (407)
                      .+++.||.+     ..+..||..+.+......+. +...-.+++..  ++++.+.||.+      ..+..||..+..   
T Consensus       344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---  417 (534)
T PHA03098        344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK---  417 (534)
T ss_pred             EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe---
Confidence            677778765     34778888776632111111 11111122222  56777777732      357889987632   


Q ss_pred             CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--------CeEEEEeCCCCC
Q 046899          277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GILNIWDHEKIG  322 (407)
Q Consensus       277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--------~~i~vwd~~~~~  322 (407)
                       +..+..+....... ++... ++. |++.||.+        ..+.+||+.+.+
T Consensus       418 -W~~~~~~p~~r~~~-~~~~~-~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        418 -WSKGSPLPISHYGG-CAIYH-DGK-IYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             -eeecCCCCccccCc-eEEEE-CCE-EEEECCccCCCCCcccceEEEecCCCCc
Confidence             33333322111111 22222 343 66677643        237888887643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.28  E-value=21  Score=30.89  Aligned_cols=118  Identities=13%  Similarity=0.093  Sum_probs=66.1

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEE-cCCCCCCcee-eecccCcceEEEEecCCCCCEEEEEe---CCCcEEEEeCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWD-ARSGSTPAVK-VEKAHNADIHCVDWNPHDVNLILTGS---ADNSIHMFDRR  270 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~tg~---~dg~i~vwd~~  270 (407)
                      .+..-.|++++ .+.+....+...+++. ..++...... ....-...|..+.++| |+..+|.-.   .++.|.+--+.
T Consensus        67 ~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   67 SLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             ccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence            45566888887 5666655566666663 3333311111 1111122899999999 777766544   35677776554


Q ss_pred             CCCCC---CCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          271 KLTSD---GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       271 ~~~~~---~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      .....   ....++.........+++++|.+++..++++...+..+..
T Consensus       145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            32211   0012222332335689999999999855545455554444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.16  E-value=6.6  Score=33.17  Aligned_cols=71  Identities=11%  Similarity=0.154  Sum_probs=45.3

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee----e-ec-------ccCcceEEEEecCCCCCEEEEEeCCCc
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK----V-EK-------AHNADIHCVDWNPHDVNLILTGSADNS  263 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~-~~-------~~~~~v~~l~~~~~~~~~l~tg~~dg~  263 (407)
                      ++..+.  ..+ .++++.+.+|.+++||+.+.+.....    . +.       .....|..+.++. +|.-+++-+ +|.
T Consensus        14 ~~~~l~--~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~   88 (219)
T PF07569_consen   14 PVSFLE--CNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGD   88 (219)
T ss_pred             ceEEEE--eCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCC
Confidence            344444  344 67888889999999999987621000    0 11       2445677777776 666666544 577


Q ss_pred             EEEEeCCC
Q 046899          264 IHMFDRRK  271 (407)
Q Consensus       264 i~vwd~~~  271 (407)
                      .+.||...
T Consensus        89 ~y~y~~~L   96 (219)
T PF07569_consen   89 SYSYSPDL   96 (219)
T ss_pred             EEEecccc
Confidence            78887764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.04  E-value=23  Score=31.05  Aligned_cols=124  Identities=13%  Similarity=0.290  Sum_probs=71.7

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-CcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      +-...+.++.|+|+. +.|++......-.++=..+++  .+..+.-. -...-.|.+.- ++++.++--.++.+.++.+.
T Consensus        83 g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~Gd--lirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          83 GETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGD--LIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccceeeCCCc-ceEEEecCCCceEEEEecCCc--eEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence            344569999999999 455555544554454444565  34333211 12234567765 56666665667888888766


Q ss_pred             CCCCCCCCC----ceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          271 KLTSDGVGS----PIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       271 ~~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      .....-..+    ++......+.....++|.|..+.++ .+-+-+=++|+.+..
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~  211 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQ  211 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEec
Confidence            521100000    1111111255688999999999887 455556688887764

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.02  E-value=24  Score=31.20  Aligned_cols=121  Identities=10%  Similarity=0.121  Sum_probs=73.7

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-----CCCceeeecc-----cCcceEEEEecCCCC------------C
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSG-----STPAVKVEKA-----HNADIHCVDWNPHDV------------N  253 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~-----~~~~v~~l~~~~~~~------------~  253 (407)
                      .-+.|+++|.+ .+.++...-+...+||....     ..++...+..     .....+.+.|+. ..            .
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccce
Confidence            34689999988 67777777899999999711     1223333332     224567788875 22            2


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEEEEEcC--CCCCEEEEeeCCCeEEEEeCC
Q 046899          254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSP--DKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       254 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~--~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      .++.+++||+|.-|........ +-.....+..  ...--..+++..  .+.+|+++--..++|.|+|-.
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~-~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTR-MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             eEEEEeCCceEEeecCcCCccc-ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            3677889999999986431100 0011122221  122334455553  367788888889999999854

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=85.80  E-value=13  Score=38.04  Aligned_cols=116  Identities=5%  Similarity=0.082  Sum_probs=77.0

Q ss_pred             CEEEEEECCCCCcEEEEEeC----------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          196 TVEDVQFCPSSAQEFCSVGD----------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      .|.+..|..+...++++|..          .|.|.+|.+...+.........-.+.+.++.--  +++++|.  -...|+
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vr  851 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVR  851 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEE
Confidence            44555687774467777753          588999988874321112222234555555443  5666664  456899


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG  322 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~  322 (407)
                      +|+..+      .+.++.-..|..++..+...-.|..+ +.|..-+.+.+-..+..+
T Consensus       852 Lye~t~------~~eLr~e~~~~~~~~aL~l~v~gdeI-~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  852 LYEWTT------ERELRIECNISNPIIALDLQVKGDEI-AVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             EEEccc------cceehhhhcccCCeEEEEEEecCcEE-EEeeccceEEEEEEeccC
Confidence            999988      55666666788889999888888866 588777888777666543

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.71  E-value=13  Score=32.78  Aligned_cols=100  Identities=13%  Similarity=0.262  Sum_probs=62.9

Q ss_pred             CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe------CCCcEEEEeCCCCCCCCCCCceeeecC----
Q 046899          217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS------ADNSIHMFDRRKLTSDGVGSPIHKFEG----  286 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~------~dg~i~vwd~~~~~~~~~~~~~~~~~~----  286 (407)
                      ..|++||..+.+.  ...-.+-.+.|++|.|.. +.++++.|.      ....+..||...       .....+..    
T Consensus        16 ~~lC~yd~~~~qW--~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~-------~~w~~~~~~~s~   85 (281)
T PF12768_consen   16 PGLCLYDTDNSQW--SSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKN-------QTWSSLGGGSSN   85 (281)
T ss_pred             CEEEEEECCCCEe--ecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCC-------CeeeecCCcccc
Confidence            3599999988773  333334678899999986 666777764      456788999887       23333333    


Q ss_pred             -CCCCEEEEEEcC-CCCCEEEEee---CCCeEEEEeCCCCCcccc
Q 046899          287 -HSAAVLCVQWSP-DKSSVFGSSA---EDGILNIWDHEKIGEKQD  326 (407)
Q Consensus       287 -h~~~v~~v~~~~-~~~~ll~s~~---~d~~i~vwd~~~~~~~~~  326 (407)
                       -.++|..+.+.. ++..+++.|.   .+..|.-||=.+...+..
T Consensus        86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~  130 (281)
T PF12768_consen   86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS  130 (281)
T ss_pred             cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence             236788887743 3333554443   234577777665554433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.47  E-value=2.4  Score=41.61  Aligned_cols=74  Identities=19%  Similarity=0.201  Sum_probs=42.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-----------eec-----------CCCCCEEEEEEcC----CCCCEE
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-----------KFE-----------GHSAAVLCVQWSP----DKSSVF  304 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~-----------~h~~~v~~v~~~~----~~~~ll  304 (407)
                      ++..++.+..||.+...........  +....           .+.           .-...+..++.++    +.. ++
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~--~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l  233 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSD--GSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT-FL  233 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----S--SS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT-EE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCC--CCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC-EE
Confidence            5567888888998888876642211  11110           000           1124566667766    455 44


Q ss_pred             EEeeCCCeEEEEeCCCCCccccc
Q 046899          305 GSSAEDGILNIWDHEKIGEKQDY  327 (407)
Q Consensus       305 ~s~~~d~~i~vwd~~~~~~~~~~  327 (407)
                      ++.+.|+++|+||+.+++++.+.
T Consensus       234 ~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  234 FTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEETTSEEEEEETTTTCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEe
Confidence            69999999999999998885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=84.90  E-value=40  Score=32.88  Aligned_cols=61  Identities=25%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC
Q 046899          217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH  287 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h  287 (407)
                      |.|.-+|+.+++  .............+....  .+.+++.++.+|.++.+|.++      ++++.+++..
T Consensus       441 g~l~AiD~~tGk--~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~T------Ge~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGK--IVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKT------GEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCc--eeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCC------CCEeEEEeCC
Confidence            456677777776  233222111111111111  345777788899999999999      9999888753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=84.74  E-value=32  Score=31.62  Aligned_cols=135  Identities=19%  Similarity=0.218  Sum_probs=64.3

Q ss_pred             CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC---CCc-EEEEEcCCCCCCceeeeccc--CcceEEEEecC
Q 046899          176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD---DSC-LILWDARSGSTPAVKVEKAH--NADIHCVDWNP  249 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~~~~~~~~--~~~v~~l~~~~  249 (407)
                      |.-.|+.+++....+ .-...+..+.|+|..+.+++-|-+   +.. -|||-+++... ....+..+  ...+..=-|.|
T Consensus       170 i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e~~gHEfw~~  247 (386)
T PF14583_consen  170 IFTIDLKTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGESVGHEFWVP  247 (386)
T ss_dssp             EEEEETTT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-T
T ss_pred             EEEEECCCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCcccccccccC
Confidence            333466666654444 356678899999998888877765   222 36676654331 12222222  23344455788


Q ss_pred             CCCCEEEE-E----eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-------------
Q 046899          250 HDVNLILT-G----SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-------------  311 (407)
Q Consensus       250 ~~~~~l~t-g----~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-------------  311 (407)
                       +|..|.- +    +.+..|.-+|+.+      ++......  ..+...+--+++|. |+|-=+.|.             
T Consensus       248 -DG~~i~y~~~~~~~~~~~i~~~d~~t------~~~~~~~~--~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~  317 (386)
T PF14583_consen  248 -DGSTIWYDSYTPGGQDFWIAGYDPDT------GERRRLME--MPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIE  317 (386)
T ss_dssp             -TSS-EEEEEEETTT--EEEEEE-TTT--------EEEEEE--E-SEEEEEE-TTSS-EEEEEE----------------
T ss_pred             -CCCEEEEEeecCCCCceEEEeeCCCC------CCceEEEe--CCceeeeEEcCCCC-EEEecCCCCCccccccccceec
Confidence             6655433 2    2344677778877      33322111  12445566678888 543333332             


Q ss_pred             ---eEEEEeCCCCC
Q 046899          312 ---ILNIWDHEKIG  322 (407)
Q Consensus       312 ---~i~vwd~~~~~  322 (407)
                         .|.+++++...
T Consensus       318 ~~p~i~~~~~~~~~  331 (386)
T PF14583_consen  318 NDPWIYLFDVEAGR  331 (386)
T ss_dssp             ---EEEEEETTTTE
T ss_pred             CCcEEEEeccccCc
Confidence               56678887643

>PRK13684 Ycf48-like protein; Provisional

Probab=84.56  E-value=31  Score=31.32  Aligned_cols=119  Identities=13%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      ...+.++.+.|++ .+++++ ..|.+..- .+.+...-......-...++++.+.+ +++.+++| ..|.+++=....- 
T Consensus       172 ~g~~~~i~~~~~g-~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G-  245 (334)
T PRK13684        172 AGVVRNLRRSPDG-KYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDL-  245 (334)
T ss_pred             cceEEEEEECCCC-eEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCC-
Confidence            3568889999987 555444 45654431 11221111222223456788999999 77776665 4676643222220 


Q ss_pred             CCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          274 SDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       274 ~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                        ..++.+..- ..-...+.++.+.|++. ++ .++.+|.+. .....++.
T Consensus       246 --~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~-~S~d~G~t  291 (334)
T PRK13684        246 --ESWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL-VSKDGGKT  291 (334)
T ss_pred             --CccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE-EeCCCCCC
Confidence              002221111 00123578899999877 55 455577664 33444333

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.24  E-value=31  Score=30.28  Aligned_cols=119  Identities=16%  Similarity=0.077  Sum_probs=79.4

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      .+-+..+.++.   ++...+-.+.-+++.|+.+...|....+....+.-.++..   .|++...+..|.-..+.|+..+.
T Consensus        86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC
Confidence            45567777775   4566667788899999999987665555444455566666   57888888867677899998865


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                      +   .............-..++.|-+  +-+ .+..|+-+.+-|+......
T Consensus       160 s---P~lagrya~~~~d~~~v~ISGn--~AY-vA~~d~GL~ivDVSnp~sP  204 (370)
T COG5276         160 S---PQLAGRYALPGGDTHDVAISGN--YAY-VAWRDGGLTIVDVSNPHSP  204 (370)
T ss_pred             C---ceeeeeeccCCCCceeEEEecC--eEE-EEEeCCCeEEEEccCCCCC
Confidence            3   2333334333333466777544  344 4456788999999876554

>PHA02790 Kelch-like protein; Provisional

Probab=82.72  E-value=11  Score=36.23  Aligned_cols=101  Identities=7%  Similarity=-0.041  Sum_probs=52.6

Q ss_pred             cEEEEEeCCC---cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899          208 QEFCSVGDDS---CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF  284 (407)
Q Consensus       208 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~  284 (407)
                      .+.+.||.++   .+..||.++.+................+.+   ++.+.+.|+   .+.+||.++..    +..+..+
T Consensus       364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~----W~~~~~m  433 (480)
T PHA02790        364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNT----WTLIDDP  433 (480)
T ss_pred             EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCc----EeEcCCC
Confidence            6777777553   477899887653211111111111122222   566667764   57789987633    5444444


Q ss_pred             cCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899          285 EGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI  321 (407)
Q Consensus       285 ~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  321 (407)
                      .........+.+  +++ |++.||.+     .++..||..+.
T Consensus       434 ~~~r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        434 IYPRDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCCC
Confidence            322222222222  444 77788754     35667776653

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=82.29  E-value=20  Score=27.37  Aligned_cols=112  Identities=12%  Similarity=0.068  Sum_probs=67.0

Q ss_pred             EEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-----CceeeecccCcceEEEEecCC----CCCEEEEEeCCCcEEEEeC
Q 046899          199 DVQFCPSSAQEFCSVGDDSCLILWDARSGST-----PAVKVEKAHNADIHCVDWNPH----DVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~l~~~~~----~~~~l~tg~~dg~i~vwd~  269 (407)
                      .-+|....+ .|+.++.-|+|.|++......     .....+..-...|++|+-.+.    +...|+.|+ ...+..||+
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            346667674 678888889999998765431     011222345667888876542    355677766 557889999


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEc---CCCCCEEEEeeCCCeEEEEeCCC
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWS---PDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      ..      ..-+..-. -.+.|+++.+-   .....++ ..+.+..|.-+|.+-
T Consensus        81 ~~------N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   81 EN------NSDLFYKE-VPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDYEG  126 (136)
T ss_pred             cc------Cchhhhhh-CccceeEEEEEecCCCCCcEE-EECceEEEEEeCCCC
Confidence            87      33332222 34567777663   2222244 344467777777654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.09  E-value=11  Score=39.80  Aligned_cols=146  Identities=10%  Similarity=0.164  Sum_probs=80.0

Q ss_pred             ccCCCCCCCCCCCCcCceeeEeecccCEEEEEEC--------CCCCcEEEEEeCCCcEEEEEcC----CCCCC-c--eee
Q 046899          170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFC--------PSSAQEFCSVGDDSCLILWDAR----SGSTP-A--VKV  234 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~--------~~~~~~l~s~~~dg~i~iwd~~----~~~~~-~--~~~  234 (407)
                      .+.|..+.+|+.++....+.+.+-...|..+..-        |.=.++|+.++. -.|.++-+.    ++... .  ...
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence            4556666666666655566665555555555432        221133444432 344444332    22210 0  011


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC------------------CCceeeec-CCCCCEEEEE
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV------------------GSPIHKFE-GHSAAVLCVQ  295 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~------------------~~~~~~~~-~h~~~v~~v~  295 (407)
                      +...+..|+|+.... +|+.|++|-.+   .+|.+-....++=                  -..+..+. .+.++|..++
T Consensus       174 i~~dg~~V~~I~~t~-nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~  249 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTE-NGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT  249 (1311)
T ss_pred             eecCCceEEEEEecc-CCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence            223356788898666 88888876644   4554322111000                  00112233 5678999999


Q ss_pred             EcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          296 WSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       296 ~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      ...... ++.+-+..++|.+||+...
T Consensus       250 ID~SR~-IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  250 IDNSRN-ILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             eccccc-eeeeeccCceEEEEEccCC
Confidence            986555 6678999999999999873

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=81.58  E-value=6.9  Score=22.47  Aligned_cols=25  Identities=8%  Similarity=0.272  Sum_probs=18.6

Q ss_pred             CCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899          204 PSSAQEFCSVGDDSCLILWDARSGS  228 (407)
Q Consensus       204 ~~~~~~l~s~~~dg~i~iwd~~~~~  228 (407)
                      |++..++++...++.|.++|..++.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~   25 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK   25 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe
Confidence            4564566666678999999997766

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=81.15  E-value=7.8  Score=27.06  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=27.2

Q ss_pred             CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      .-+.|.++|++++|+++....+.|+++..+.
T Consensus        55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            4578999999999999999999999998754

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PRK10115 protease 2; Provisional

Probab=80.44  E-value=70  Score=32.46  Aligned_cols=113  Identities=10%  Similarity=0.027  Sum_probs=62.1

Q ss_pred             CEEEEEECCCCCcEEEEEe-CC----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-C-----CcE
Q 046899          196 TVEDVQFCPSSAQEFCSVG-DD----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-D-----NSI  264 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-d-----g~i  264 (407)
                      .+..+.++|++ ++|+-+. .+    -.|++-|+.++.. ....+. ...  ..++|.+ +++.|+.... +     ..|
T Consensus       128 ~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~-l~~~i~-~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        128 TLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNW-YPELLD-NVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCC-CCcccc-Ccc--eEEEEee-CCCEEEEEEecCCCCCCCEE
Confidence            46678899999 5555443 23    3588889987751 111111 111  4699999 6665544433 2     357


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEE-EEEEcCCCCCEEEEeeC--CCeEEEEeC
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVL-CVQWSPDKSSVFGSSAE--DGILNIWDH  318 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~ll~s~~~--d~~i~vwd~  318 (407)
                      ..+++.+...    +-...+........ .+..+.+++++++.+..  ++.+.+++.
T Consensus       202 ~~h~lgt~~~----~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        202 WRHTIGTPAS----QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEECCCChh----HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            7778877310    22223332223333 33445578877654443  357888884

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.41  E-value=74  Score=32.68  Aligned_cols=69  Identities=19%  Similarity=0.273  Sum_probs=42.0

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE-------------EEEecCC-CCCEEEEEeC----------CCc
Q 046899          208 QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH-------------CVDWNPH-DVNLILTGSA----------DNS  263 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-------------~l~~~~~-~~~~l~tg~~----------dg~  263 (407)
                      ..++.++.|+.|.-.|.++++  ....+. ..+.|.             .+.-.|. .+..+++|+.          +|.
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk--~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGK--LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCC--EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            367778889999999999988  343331 111110             1111110 1235555643          688


Q ss_pred             EEEEeCCCCCCCCCCCceeeec
Q 046899          264 IHMFDRRKLTSDGVGSPIHKFE  285 (407)
Q Consensus       264 i~vwd~~~~~~~~~~~~~~~~~  285 (407)
                      |+-+|.++      ++.+-.+.
T Consensus       338 I~A~Da~T------Gkl~W~~~  353 (764)
T TIGR03074       338 IRAFDVNT------GALVWAWD  353 (764)
T ss_pred             EEEEECCC------CcEeeEEe
Confidence            99999999      77776664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=80.39  E-value=22  Score=33.67  Aligned_cols=123  Identities=18%  Similarity=0.212  Sum_probs=71.9

Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC------CCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899          209 EFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH------DVNLILTGSADNSIHMFDRRKLTSDGVGSPIH  282 (407)
Q Consensus       209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~------~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  282 (407)
                      ++..|+.-..++--|+..++  .+.....|..-  -+.|.|.      ....-++|-.+..|.-.|.|..     +..+.
T Consensus       482 i~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~-----gNKi~  552 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR-----GNKIK  552 (776)
T ss_pred             EEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEeccccc-----CCcee
Confidence            44455566677778888777  56666555543  4677772      1122345556777777777763     22222


Q ss_pred             --eecC--CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          283 --KFEG--HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       283 --~~~~--h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                        ..+.  ......+..-..+| |+ |.+|.-|.|++||--.-.....+++.+..|-.+..+.+
T Consensus       553 v~esKdY~tKn~Fss~~tTesG-yI-a~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~  614 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTTESG-YI-AAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTAN  614 (776)
T ss_pred             eeeehhccccccccccccccCc-eE-EEecCCCceeeehhhcchhhhcCcccccceeeeEeecC
Confidence              2221  11222333333344 35 79999999999996654555667777776666665555

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=80.13  E-value=49  Score=30.50  Aligned_cols=100  Identities=11%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-----CCCce-eeecc----cCcceEEEEecCCCCCEEEEEeCC----
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSG-----STPAV-KVEKA----HNADIHCVDWNPHDVNLILTGSAD----  261 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~-~~~~~----~~~~v~~l~~~~~~~~~l~tg~~d----  261 (407)
                      ....|++.+++  ++++ ......++.|....     +...+ ..+..    +......+.|.| ++.+.++-+..    
T Consensus        73 ~p~Gi~~~~~G--lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~  148 (367)
T TIGR02604        73 MVTGLAVAVGG--VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK  148 (367)
T ss_pred             CccceeEecCC--EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence            45678888876  4443 33333334354321     11011 11211    123467899999 77765544421    


Q ss_pred             ---------------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe
Q 046899          262 ---------------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS  307 (407)
Q Consensus       262 ---------------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~  307 (407)
                                     |.|.-+|...       ..+..+...-.....++|+|+|. ++++-
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg-------~~~e~~a~G~rnp~Gl~~d~~G~-l~~td  201 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDG-------GKLRVVAHGFQNPYGHSVDSWGD-VFFCD  201 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCC-------CeEEEEecCcCCCccceECCCCC-EEEEc
Confidence                           3344444443       22223322222347899999988 55443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	407
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-37
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-37
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		8e-37
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-37
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-35
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-34
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-09
2h9l_A	329	Wdr5delta23 Length = 329		6e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		4e-06
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		1e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		1e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		2e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		9e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		2e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-04
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		8e-04

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 189/422 (44%), Gaps = 65/422 (15%)
Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73
Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 74  DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN  I+AT T S DVL++D    P++    G  + +PDL     L   Q     L+  P
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSG--ECNPDLR----LRGHQKEGYGLSWNP 187
Query: 153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCS 212
             +    S  A+  +          P E   + A+  + GH   VEDV +       F S
Sbjct: 188 NLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS 245
Query: 213 VGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR 270
           V DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
Query: 271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ----- 325
            L        +H FE H   +  VQWSP   ++  SS  D  LN+WD  KIGE+Q     
Sbjct: 305 NLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359
Query: 326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP 385
           + G  +   IH  +++ + D           +     ++  ++   ++++W+M + IY  
Sbjct: 360 EDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQVWQMAENIYND 411
Query: 386 EE 387
           E+
Sbjct: 412 ED 413

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 189/428 (44%), Gaps = 77/428 (17%)
Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 20  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 79
Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 80  DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 139
Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN+ ++AT T S DVL++D    P++    G  +  PDL     L   Q     L+  P
Sbjct: 140 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLR----LRGHQKEGYGLSWNP 193
Query: 153 GSAKSTASGGANSK------NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206
                  S   +        NA+        P E   I A+  + GH   VEDV +    
Sbjct: 194 NLNGYLLSASDDHTICLWDINAT--------PKEHRVIDAKNIFTGHTAVVEDVAWHLLH 245
Query: 207 AQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264
              F SV DD  L++WD R+ +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTV 304
Query: 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324
            ++D R L        +H FE H   +  VQWSP   ++  SS  D  L++WD  KIGE+
Sbjct: 305 ALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 359
Query: 325 Q-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379
           Q     + G  +   IH  +++ + D           +     ++  ++   ++++W+M 
Sbjct: 360 QSTEDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWIICSVSEDNIMQVWQMA 411
Query: 380 DLIYRPEE 387
           + +Y  EE
Sbjct: 412 ENVYNDEE 419

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 189/428 (44%), Gaps = 77/428 (17%)
Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 18  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 77
Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 78  DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 137
Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN+ ++AT T S DVL++D    P++    G  +  PDL     L   Q     L+  P
Sbjct: 138 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLR----LRGHQKEGYGLSWNP 191
Query: 153 GSAKSTASGGANSK------NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206
                  S   +        NA+        P E   I A+  + GH   VEDV +    
Sbjct: 192 NLNGYLLSASDDHTICLWDINAT--------PKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243
Query: 207 AQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264
              F SV DD  L++WD R+ +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTV 302
Query: 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324
            ++D R L        +H FE H   +  VQWSP   ++  SS  D  L++WD  KIGE+
Sbjct: 303 ALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357
Query: 325 Q-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379
           Q     + G  +   IH  +++ + D           +     ++  ++   ++++W+M 
Sbjct: 358 QSTEDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWIICSVSEDNIMQVWQMA 409
Query: 380 DLIYRPEE 387
           + +Y  EE
Sbjct: 410 ENVYNDEE 417

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 189/428 (44%), Gaps = 77/428 (17%)
Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L    +
Sbjct: 22  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 81
Query: 67  EEARSPFVKKFK----------------------------------TIIHPGEVNRIREL 92
           +E     +   +                                   I H GEVNR R +
Sbjct: 82  DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 141
Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN+ ++AT T S DVL++D    P++    G  +  PDL     L   Q     L+  P
Sbjct: 142 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLR----LRGHQKEGYGLSWNP 195
Query: 153 GSAKSTASGGANSK------NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS 206
                  S   +        NA+        P E   I A+  + GH   VEDV +    
Sbjct: 196 NLNGYLLSASDDHTICLWDINAT--------PKEHRVIDAKNIFTGHTAVVEDVAWHLLH 247
Query: 207 AQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI 264
              F SV DD  L++WD R+ +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTV 306
Query: 265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK 324
            ++D R L        +H FE H   +  VQWSP   ++  SS  D  L++WD  KIGE+
Sbjct: 307 ALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 361
Query: 325 Q-----DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI 379
           Q     + G  +   IH  +++ + D           +     ++  ++   ++++W+M 
Sbjct: 362 QSTEDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWIICSVSEDNIMQVWQMA 413
Query: 380 DLIYRPEE 387
           + +Y  EE
Sbjct: 414 ENVYNDEE 421

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 187/424 (44%), Gaps = 71/424 (16%)
Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P++ +   K+     L L    +
Sbjct: 16  ERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTS 75
Query: 67  EEARSPFVKKFKT----------------------------------IIHPGEVNRIREL 92
           +E     V +                                     I H GEVNR R +
Sbjct: 76  DEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYM 135
Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN  I+AT T S DVL++D    P +    G  + +PDL     L   Q     L    
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSG--ECNPDLR----LRGHQKEGYGL---- 185
Query: 153 GSAKSTASGGANSKNASKSGGNGD---KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQE 209
            S  S  SG   S +   +    D    P E   + A+  + GH   VEDV +       
Sbjct: 186 -SWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 210 FCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
           F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVD-AHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ-- 325
           D R L        +H FE H   +  V WSP   ++  SS  D  LN+WD  KIGE+Q  
Sbjct: 304 DLRNLKLK-----LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
Query: 326 ---DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLI 382
              + G  +   IH  +++ + D           +     ++  ++   +++IW+M + I
Sbjct: 359 EDAEDGPPELLFIHGGHTAKISD--------FSWNPNEPWVICSVSEDNIMQIWQMAENI 410
Query: 383 YRPE 386
           Y  E
Sbjct: 411 YNDE 414

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  141 bits (355), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 159/358 (44%), Gaps = 58/358 (16%)
Query: 9   ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQFN 66
           ER +++ Y  WK   P LYD +  H L WPSL+ +W P++ +   K+     L L    +
Sbjct: 16  ERVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTS 75
Query: 67  EEARSPFVKKFKT----------------------------------IIHPGEVNRIREL 92
           +E     V +                                     I H GEVNR R  
Sbjct: 76  DEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYX 135
Query: 93  PQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP 152
           PQN  I+AT T S DVL++D    P +    G  + +PDL     L   Q     L    
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSG--ECNPDLR----LRGHQKEGYGL---- 185
Query: 153 GSAKSTASGGANSKNASKSGGNGD---KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQE 209
            S  S  SG   S +   +    D    P E   + A+  + GH   VEDV +       
Sbjct: 186 -SWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 210 FCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
           F SV DD  L +WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVD-AHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ 325
           D R L        +H FE H   +  V WSP   ++  SS  D  LN+WD  KIGE+Q
Sbjct: 304 DLRNLKLK-----LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 118/291 (40%), Gaps = 50/291 (17%)
Query: 82  HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSI 141
           H G+V  +   P+ + IV+   D   +++W+       HA+           +    W +
Sbjct: 65  HSGKVYSLDWTPEKNWIVSASQDGR-LIVWNALTSQKTHAI-----------KLHCPWVM 112
Query: 142 QDHVSALAAEPGSAKSTASGGANSKNA-----SKSGGNGDKPLESPSIGARGKYLGHEDT 196
           +       A   + +S A GG +S  +     S++  +G+ P+            GH+  
Sbjct: 113 E------CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV-------LTGHKGY 159
Query: 197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV---KVEKAHNADIHCVDWNPHDVN 253
               Q+ P       +   D   +LWD  +G   ++   +    H AD+  +  N  + N
Sbjct: 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN 219
Query: 254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL 313
           + ++GS D ++ ++D R +TS  V      + GH   +  V++ PD    FG+ ++DG  
Sbjct: 220 MFISGSCDTTVRLWDLR-ITSRAV----RTYHGHEGDINSVKFFPDGQR-FGTGSDDGTC 273
Query: 314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL 364
            ++D     + Q Y              D  D E  ++TS+    I GRLL
Sbjct: 274 RLFDMRTGHQLQVYNR----------EPDRNDNELPIVTSVAFS-ISGRLL 313

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 80  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 136
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 137 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 188
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 189 LCRIWD 194

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 85  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 141
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 142 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 193
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 194 LCRIWD 199

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 87  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 143
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 144 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 195
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 196 LCRIWD 201

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 69  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 125
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 126 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 177
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 178 LCRIWD 183

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 63  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 119
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 120 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 171
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 172 LCRIWD 177

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 62  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 118
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 119 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 170
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 171 LCRIWD 176

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 63  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 119
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 120 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 171
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 172 LCRIWD 177

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 69  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 125
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 126 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 177
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 178 LCRIWD 183

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 175 LCRIWD 180

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 64  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 120
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 121 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 172
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 173 LCRIWD 178

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 69  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 125
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 126 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 177
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 178 LCRIWD 183

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 175 LCRIWD 180

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 59  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 115
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 116 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 167
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 168 LCRIWD 173

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 68  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 124
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 125 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 176
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 177 LCRIWD 182

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 175 LCRIWD 180

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 175 LCRIWD 180

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH+  + DV +  S +    S  DD  L +WD  SG    +K  K H+  + C ++NP  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQS 122
Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
            NLI++GS D S+ ++D +       G  +     HS  V  V ++ D S +  SS+ DG
Sbjct: 123 -NLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG 174
Query: 312 ILNIWD 317
           +  IWD
Sbjct: 175 LCRIWD 180

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 11/153 (7%)
Query: 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN 248
           K+LGH   V  V F P + Q   S G D+ L +W+ + G         AH   + CV ++
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFS 161
Query: 249 PH-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307
           P  D  +I++G  DN + ++D         G  +   +GH+  V  V  SPD  S+  SS
Sbjct: 162 PSLDAPVIVSGGWDNLVKVWDL------ATGRLVTDLKGHTNYVTSVTVSPD-GSLCASS 214
Query: 308 AEDGILNIWDHEKIGEKQDYGELKYPIIHPAYS 340
            +DG+  +WD  K GE         PI    +S
Sbjct: 215 DKDGVARLWDLTK-GEALSEMAAGAPINQICFS 246

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD 246
           R +   H  +V  V F P   Q   S  DD  + LW+ R+G    ++    H++ +  V 
Sbjct: 9   RNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVWGVA 64
Query: 247 WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS 306
           ++P D   I + S D ++ +++R        G  +    GHS++V  V +SPD  ++  S
Sbjct: 65  FSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI-AS 115
Query: 307 SAEDGILNIWDHE 319
           +++D  + +W+  
Sbjct: 116 ASDDKTVKLWNRN 128

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 196 TVEDVQFCPSSAQEFCSV----GDDSCLILWDARSGSTPA-VKVEKAHNADIHCVDWNPH 250
           T  D  FC  + +    +    G  + L+L   ++G     V +   H A +  + W PH
Sbjct: 33  TTWDSGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPH 92
Query: 251 DVNLILTGSADNSIHMFDRRKLTSDG-----VGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305
           + N+I +GS D ++ +++      DG     +  P+   EGH+  V  V W P   +V  
Sbjct: 93  NDNVIASGSEDCTVMVWE----IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148
Query: 306 SSAEDGILNIWD 317
           S+  D ++ +WD
Sbjct: 149 SAGXDNVILVWD 160

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
           GHE  V  V +  P       S   D  +++W   +G    + V   H+A ++ V W PH
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
           +   L+L  S+D  + + + ++   +G  SPI   + H+  V    W+P           
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
             +S  F +   D ++ IW +
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
           GHE  V  V +  P       S   D  +++W   +G    + V   H+A ++ V W PH
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
           +   L+L  S+D  + + + ++   +G  SPI   + H+  V    W+P           
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
             +S  F +   D ++ IW +
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 25/173 (14%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST------PAVKVEKAHNADIHCV 245
           GH   V D+ +CP +     S  +D  +++W+   G        P + +E  H   +  V
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF--EGHSAAVLCVQWSPDKSSV 303
            W+P   N++L+   DN I ++D       G G+ +     + H   +  V WS D  ++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDV------GTGAAVLTLGPDVHPDTIYSVDWSRD-GAL 190
Query: 304 FGSSAEDGILNIWDHEK---IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS 353
             +S  D  + + +  K   + EK    E   P +H  + S     E K+LT+
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP-VHAVFVS-----EGKILTT 237

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
           GHE  V  V +  P       S   D  +++W   +G    + V   H+A ++ V W PH
Sbjct: 53  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
           +   L+L  S+D  + + + ++   +G  SPI   + H+  V    W+P           
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
             +S  F +   D ++ IW +
Sbjct: 169 TKESRKFVTGGADNLVKIWKY 189

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 33/198 (16%)
Query: 188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDW 247
           G   GH   V  + +  S   +  S G+D+ + +WDARS      K    HNA +  V W
Sbjct: 211 GTLQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAW 267
Query: 248 NPHDVNLILT--GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305
            P   NL+ T  G+ D  IH ++         G+ ++  +  S  V  + WSP    +  
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNA------ATGARVNTVDAGS-QVTSLIWSPHSKEIMS 320
Query: 306 SSA-EDGILNIWDHEKIG--EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR 362
           +    D  L+IW +   G  ++ D       +++ A S D                  GR
Sbjct: 321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD------------------GR 362
Query: 363 LLVCLTMVKVLEIWRMID 380
           +L      + L+ WR+ D
Sbjct: 363 ILSTAASDENLKFWRVYD 380

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
           GHE  V  V +  P       S   D  +++W   +G    + V   H+A ++ V W PH
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
           +   ++L  S+D  + + + ++   +G  SPI   + H+  V    W+P           
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
             +S  F +   D ++ IW +
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 55/221 (24%)
Query: 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA-----------HNAD 241
           H   +  +   P   +   S G D  ++L+D  + S  +    KA           H   
Sbjct: 42  HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV------------------------ 277
           +  V W PHD  +  + S D ++ ++D   L +  V                        
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 278 --------------GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK--- 320
                         GS  H  +GH   +L V WSP    +  +++ D  + +WD  +   
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 321 --IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI 359
             I   Q  G+ K   +  A ++    +     TS G+HL+
Sbjct: 222 CLITLDQHNGK-KSQAVESANTAHNGKVNGLCFTSDGLHLL 261

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 179 LESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA 237
           + SP+ I  R   +GH   V  V F     +   S   D  + +W+  + +   V+    
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWN--TSTCEFVRTLNG 294
Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297
           H   I C+ +      L+++GS+DN+I ++D         G+ +   EGH   V C+++ 
Sbjct: 295 HKRGIACLQYRDR---LVVSGSSDNTIRLWDIE------CGACLRVLEGHEELVRCIRFD 345
Query: 298 PDKSSVFGSSAEDGILNIWD 317
             +     S A DG + +WD
Sbjct: 346 NKR---IVSGAYDGKIKVWD 362

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 95  NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-----------------DQSVV 137
           + K +AT  +   + IWD+E   NR  V+       D+                 D++V 
Sbjct: 134 DGKFLATGAEDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 138 LW-----------SIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA 186
           +W           SI+D V+ +A  PG  K  A+G  +          G       S   
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW---------DARSGSTPAVKVEKA 237
            G   GH+D+V  V F     Q   S   D  + LW         D+++ ++   +V   
Sbjct: 251 SGT--GHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297
            + D         +   IL+GS D  +  +D++       G+P+   +GH  +V+ V  +
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------GNPLLMLQGHRNSVISVAVA 361
Query: 298 PDKS-----SVFGSSAEDGILNIWDHEKIG 322
              S     +VF + + D    IW ++KI 
Sbjct: 362 NGSSLGPEYNVFATGSGDCKARIWKYKKIA 391

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD----------ARSGSTPAVK----VEKA 237
           GHE TV  + F PS  Q   S  DD  + +W           A SGS P+ K    +   
Sbjct: 192 GHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD----GVGSPIHKFEGHSAAVLC 293
           H+  I+ + W       + T   D++I +F +    SD          H  + HS  V C
Sbjct: 251 HSRTIYDIAWC-QLTGALATACGDDAIRVF-QEDPNSDPQQPTFSLTAHLHQAHSQDVNC 308
Query: 294 VQWSPDKSSVFGSSAEDGILNIWDHEK 320
           V W+P +  +  S ++DG +  W +++
Sbjct: 309 VAWNPKEPGLLASCSDDGEVAFWKYQR 335

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 23/142 (16%)
Query: 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA---HNADI 242
           + G   G    +  V F PS      S  DD+ + +++      P  K +     H   +
Sbjct: 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-----PPFKFKSTFGEHTKFV 193
Query: 243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-------GHSAAVLCVQ 295
           H V +NP D +L  +   D +I +++    T  GV      FE        HS +V  + 
Sbjct: 194 HSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGV------FEDDSLKNVAHSGSVFGLT 246
Query: 296 WSPDKSSVFGSSAEDGILNIWD 317
           WSPD + +  +SA D  + IW+
Sbjct: 247 WSPDGTKIASASA-DKTIKIWN 267

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252
           H+D V  V    S  Q   S   D C+ +WD        +   +AH A + CV  +PH  
Sbjct: 126 HDDIVSTVSVLSSGTQAV-SGSKDICIKVWDL--AQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 253 NLILTGSADNSIHMFDRR-KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
           ++ L+ S DN I ++D R    +  +G     +   S A     W P +S VF    E+G
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-----WHPQQSEVFVFGDENG 237
Query: 312 ILNIWD 317
            +++ D
Sbjct: 238 TVSLVD 243

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
           GHE  V  V +  P       S   D  + +W   +G    + V   H+A ++ V W PH
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 251 DVN-LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP----------- 298
           +    +L  S+D  + + + ++   +G  SPI   + H+  V    W+P           
Sbjct: 111 EYGPXLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 299 -DKSSVFGSSAEDGILNIWDH 318
             +S  F +   D ++ IW +
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 171 SGGNGDKPLESPSIGARG------KYLGHEDTVEDVQFCPSSAQEFCSVG--DDSCLILW 222
           SGGN +     PS    G       +  H+  V+ V +CP  +    + G   D  + +W
Sbjct: 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Query: 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRRKLTSDGVGSPI 281
           +  SG+   +    AH + +  + W+PH   LI   G A N + ++    +      + +
Sbjct: 307 NVCSGA--CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------AKV 357
Query: 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW-----DHEKIGEKQDYGELKYPIIH 336
            + +GH++ VL +  SPD ++V  S+A D  L +W     D  +  E++     K  +IH
Sbjct: 358 AELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASAAKSSLIH 416

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 171 SGGNGDKPLESPSIGARG------KYLGHEDTVEDVQFCPSSAQEFCSVG--DDSCLILW 222
           SGGN +     PS    G       +  H+  V+ V +CP  +    + G   D  + +W
Sbjct: 258 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Query: 223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRRKLTSDGVGSPI 281
           +  SG+   +    AH + +  + W+PH   LI   G A N + ++    +      + +
Sbjct: 318 NVCSGA--CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------AKV 368
Query: 282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW-----DHEKIGEKQDYGELKYPIIH 336
            + +GH++ VL +  SPD ++V  S+A D  L +W     D  +  E++     K  +IH
Sbjct: 369 AELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASAAKSSLIH 427

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
           + GHE  V  V F P     F S   D  + +W +   STP   +       ++ VD+ P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 250 -HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
             D   ++T S D +I ++D +        S +   EGH + V    + P    +  S +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 309 EDGILNIWD 317
           EDG L IW+
Sbjct: 248 EDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
           + GHE  V  V F P     F S   D  + +W +   STP   +       ++ VD+ P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 250 -HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
             D   ++T S D +I ++D +        S +   EGH + V    + P    +  S +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 309 EDGILNIWD 317
           EDG L IW+
Sbjct: 248 EDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
           + GHE  V  V F P     F S   D  + +W +   STP   +       ++ VD+ P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 250 H-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
             D   ++T S D +I ++D +        S +   EGH + V    + P    +  S +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 309 EDGILNIWD 317
           EDG L IW+
Sbjct: 248 EDGTLKIWN 256

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 88/212 (41%), Gaps = 43/212 (20%)
Query: 192 GHEDTVEDVQFCPSSAQEFC---SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN 248
           GH   V D+      +QE C   S   D  L LWD R+G+T   K    H ++++ V ++
Sbjct: 74  GHNHFVSDLAL----SQENCFAISSSWDKTLRLWDLRTGTT--YKRFVGHQSEVYSVAFS 127
Query: 249 PHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV----- 303
           P D   IL+  A+  I +++   +  +   S   K E HS  V CV++SP   S      
Sbjct: 128 P-DNRQILSAGAEREIKLWN---ILGECKFSSAEK-ENHSDWVSCVRYSPIMKSANKVQP 182
Query: 304 ----FGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI 359
               F S   DG L +W+           +++Y       + + L I             
Sbjct: 183 FAPYFASVGWDGRLKVWNTN--------FQIRYTFKAHESNVNHLSISP----------- 223
Query: 360 HGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA 391
           +G+ +      K L IW +++L Y P+ E  A
Sbjct: 224 NGKYIATGGKDKKLLIWDILNLTY-PQREFDA 254

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP 249
           + GHE  V  V F P     F S   D  + +W +   STP   +       ++ VD+ P
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 250 H-DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
             D   ++T S D +I ++D +        S +   EGH + V    + P    +  S +
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 309 EDGILNIWD 317
           EDG L IW+
Sbjct: 248 EDGTLKIWN 256

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
           GH   V DV    SS  +F   G  D  L LWD  +G+T    V   H  D+  V ++  
Sbjct: 84  GHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFSS- 138
Query: 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS-VFGSSAE 309
           D   I++GS D +I +++     + GV     + E HS  V CV++SP+ S+ +  S   
Sbjct: 139 DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 310 DGILNIWD 317
           D ++ +W+
Sbjct: 194 DKLVKVWN 201

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 192 GHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
           GH   V DV    SS  +F   G  D  L LWD  +G+T    V   H  D+  V ++  
Sbjct: 61  GHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFSS- 115
Query: 251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS-VFGSSAE 309
           D   I++GS D +I +++     + GV     + E HS  V CV++SP+ S+ +  S   
Sbjct: 116 DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 170
Query: 310 DGILNIWD 317
           D ++ +W+
Sbjct: 171 DKLVKVWN 178

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 21/158 (13%)
Query: 192 GHEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
           GHE  V  V +  P       S   D  +I+W   +G+         H++ ++ V W PH
Sbjct: 55  GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 251 DVNLILT-GSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS------------ 297
           D  LIL  GS+D +I +      T +G          H+     V W+            
Sbjct: 115 DYGLILACGSSDGAISLL---TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 171
Query: 298 ----PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK 331
               P+    F S   D ++ +W  E+ G+ ++  +L+
Sbjct: 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	407
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.77
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.76
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.68
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.64
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.64
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.62
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.62
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.59
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.57
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.48
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.48
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.48
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.45
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.45
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.44
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.43
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.42
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.41
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.39
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.39
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.39
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.38
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.35
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.33
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.31
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.29
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.27
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.27
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.25
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.24
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.24
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.2
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.2
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.18
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.17
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.16
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.14
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.13
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.1
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.09
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.08
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.04
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.03
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.99
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.96
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.94
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.93
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.92
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.92
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.82
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.8
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.78
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.77
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.76
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.76
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.75
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.74
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.71
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.7
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.69
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.68
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.67
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.65
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.64
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.62
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.61
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.61
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.51
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.49
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.48
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.47
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.44
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.4
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.34
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.34
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.31
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.29
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.25
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.23
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.19
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.14
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.12
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.02
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.02
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.99
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.98
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.87
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.87
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.82
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.82
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.78
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.76
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.72
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.72
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.7
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.67
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.59
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.52
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.5
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.5
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.47
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.37
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.28
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.26
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.25
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.17
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.1
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.99
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.97
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.9
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.76
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.71
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.47
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.46
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.35
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.35
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.29
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.54
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.52
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.3
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.23
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.02
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.28
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.08
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.04
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.67
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.97
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.89
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.12
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.98
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.95
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.88
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.7
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.59
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.48
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.3
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	89.13
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.89
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.88
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	88.28
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	87.84
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.58
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.88
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	86.53
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	84.94
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	84.49
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	82.36
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	80.25

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1e-45  Score=347.25  Aligned_cols=329  Identities=29%  Similarity=0.510  Sum_probs=255.0

Q ss_pred             cccCcchhhhhhhhccCceEEEeeeecccCCCeeEEEEeecccccCc--cceEEEEeecc--------------c-----
Q 046899            7 GMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATY--KNRQRLYLSEQ--------------F-----   65 (407)
Q Consensus         7 ~~~~~~~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~~~~~~~--~~~~~i~~~~~--------------~-----   65 (407)
                      .+++.++++|++||+|+|++|++++.+.++||+++++|+|+......  ....++++++.              +     
T Consensus        16 ~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~   95 (430)
T 2xyi_A           16 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDA   95 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC----
T ss_pred             hhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcc
Confidence            45678899999999999999999999999999999999997532111  11466677661              0     


Q ss_pred             -------Ccc--------cCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC----------Ccc
Q 046899           66 -------NEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP----------NRH  120 (407)
Q Consensus        66 -------~~~--------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~----------~~~  120 (407)
                             +++        ...+.+......+|.+.|++++|+|+++++||+|+.||.|++||+.+..          ...
T Consensus        96 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~  175 (430)
T 2xyi_A           96 QFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL  175 (430)
T ss_dssp             ----------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE
T ss_pred             ccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE
Confidence                   000        1233455677789999999999999658899999999999999998632          222


Q ss_pred             cccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCC-ccccccCCCCCCCCCCCCcCc-------eeeEee
Q 046899          121 AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANS-KNASKSGGNGDKPLESPSIGA-------RGKYLG  192 (407)
Q Consensus       121 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~-------~~~~~~  192 (407)
                      .+.+|..                          .+..+....... .+++++.+|.+++|++.....       ...+.+
T Consensus       176 ~~~~h~~--------------------------~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  229 (430)
T 2xyi_A          176 RLRGHQK--------------------------EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG  229 (430)
T ss_dssp             EEECCSS--------------------------CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC
T ss_pred             EecCCCC--------------------------CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC
Confidence            2222221                          122222222223 578889999999999987432       455668


Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS-TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                      |...|.+++|+|.+..+|++++.||.|++||+++.. ......+..|...|++++|+|.+..++++|+.||.|++||++.
T Consensus       230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            999999999999665899999999999999999873 1145566789999999999994445899999999999999997


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC--------------CcccccccCCCcccCC
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI--------------GEKQDYGELKYPIIHP  337 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~--------------~~~~~~~~~~~~v~~~  337 (407)
                      .     ..++..+..|...|++++|+|+++++|++++.|+.|++||+...              +.+..+.+|..+|+++
T Consensus       310 ~-----~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  384 (430)
T 2xyi_A          310 L-----KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF  384 (430)
T ss_dssp             T-----TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE
T ss_pred             C-----CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE
Confidence            4     36788999999999999999999888899999999999999873              4445566788888899


Q ss_pred             CCcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeeccccccC
Q 046899          338 AYSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRMIDLIYR  384 (407)
Q Consensus       338 ~~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~~~~~~  384 (407)
                      +|+|+                  +. .|++++.|+.|+||++....+.
T Consensus       385 ~~~p~------------------~~~~l~s~s~dg~i~iw~~~~~~~~  414 (430)
T 2xyi_A          385 SWNPN------------------EPWIICSVSEDNIMQVWQMAENVYN  414 (430)
T ss_dssp             EECSS------------------STTEEEEEETTSEEEEEEECHHHHC
T ss_pred             EECCC------------------CCCEEEEEECCCCEEEeEccccccc
Confidence            88887                  66 7899999999999999854443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.6e-42  Score=320.23  Aligned_cols=274  Identities=19%  Similarity=0.314  Sum_probs=242.7

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEec
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSI  141 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~  141 (407)
                      ...+.+|.++|++++|+| ++.+|++|+.||+|+|||+.+++....+.+|...+.++              |++|++||+
T Consensus       101 ~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             eEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            345568999999999999 88899999999999999999998888888877654322              899999999


Q ss_pred             ccccc--ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcE
Q 046899          142 QDHVS--ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCL  219 (407)
Q Consensus       142 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i  219 (407)
                      .+...  .+..+...+..+........+++++.|+.+++||+.++.++..+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus       180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v  258 (410)
T 1vyh_C          180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTV  258 (410)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeE
Confidence            87643  344555555555555556678999999999999999999999999999999999999999 899999999999


Q ss_pred             EEEEcCCCCCCceeeecccCcceEEEEecCCC-------------------CCEEEEEeCCCcEEEEeCCCCCCCCCCCc
Q 046899          220 ILWDARSGSTPAVKVEKAHNADIHCVDWNPHD-------------------VNLILTGSADNSIHMFDRRKLTSDGVGSP  280 (407)
Q Consensus       220 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~-------------------~~~l~tg~~dg~i~vwd~~~~~~~~~~~~  280 (407)
                      ++||++++.  ....+..|...|.+++|+|..                   +.+|++|+.||.|++||+++      +.+
T Consensus       259 ~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~------~~~  330 (410)
T 1vyh_C          259 RVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST------GMC  330 (410)
T ss_dssp             EEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT------TEE
T ss_pred             EEEECCCCc--eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC------Cce
Confidence            999999887  677888999999999999931                   67899999999999999998      889


Q ss_pred             eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCc
Q 046899          281 IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH  360 (407)
Q Consensus       281 ~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~  360 (407)
                      +.++.+|...|++++|+|++++| ++|+.|++|++||+.+++.+..+.+|..+|++++|+|+                  
T Consensus       331 ~~~~~~h~~~v~~v~~~~~g~~l-~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~------------------  391 (410)
T 1vyh_C          331 LMTLVGHDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT------------------  391 (410)
T ss_dssp             EEEEECCSSCEEEEEECSSSSCE-EEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS------------------
T ss_pred             EEEEECCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCC------------------
Confidence            99999999999999999999976 69999999999999999999999999999999999998                  


Q ss_pred             cceeeeEEEeeeEEEeec
Q 046899          361 GRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       361 ~~~i~~~~~d~~i~iwd~  378 (407)
                      +..|++|+.|++|+||++
T Consensus       392 ~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          392 APYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSCEEEEETTSEEEEEC-
T ss_pred             CCEEEEEeCCCcEEEEeC
Confidence            889999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-41  Score=304.46  Aligned_cols=284  Identities=15%  Similarity=0.214  Sum_probs=241.1

Q ss_pred             ccCCCeeEEEEee-------cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCC
Q 046899           34 NLVWPSLSCRWGP-------QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSP  106 (407)
Q Consensus        34 ~~~~p~~s~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg  106 (407)
                      .+.-+..++.|.|       .+++++.|+.+++|...   .   ........+.+|...|.+++|++ ++.++++|+.|+
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~---~---~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~  102 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR---D---ERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDA  102 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE---T---TEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTS
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC---C---CCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCC
Confidence            4556788889976       38899999999999221   1   11122334568999999999999 888999999999


Q ss_pred             cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc
Q 046899          107 DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA  186 (407)
Q Consensus       107 ~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~  186 (407)
                      +|++||+.+++....+..+...+                          ..+........+++++.++.+++|+...++.
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~~~~--------------------------~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~  156 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGPVDA--------------------------WTLAFSPDSQYLATGTHVGKVNIFGVESGKK  156 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCC--------------------------CCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred             cEEEEECCCCCEEEEEeCCCccE--------------------------EEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence            99999998876555544332211                          1111122234578889999999999999999


Q ss_pred             eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       187 ~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                      ...+..|...|.+++|+|++ ++|++|+.||.|++||+++++  ....+.+|..+|.+++|+| ++++|++|+.||.|++
T Consensus       157 ~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~i  232 (321)
T 3ow8_A          157 EYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGK--LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKI  232 (321)
T ss_dssp             EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEE
T ss_pred             eEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--EEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEE
Confidence            99999999999999999999 899999999999999999887  6778889999999999999 9999999999999999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI  346 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~  346 (407)
                      ||++.      ++.+.++.+|...|.+++|+|++.+| ++++.|++|++||+++++.+..+.+|..+|++++|+|+    
T Consensus       233 wd~~~------~~~~~~~~~h~~~v~~~~~sp~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~----  301 (321)
T 3ow8_A          233 YDVQH------ANLAGTLSGHASWVLNVAFCPDDTHF-VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN----  301 (321)
T ss_dssp             EETTT------CCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT----
T ss_pred             EECCC------cceeEEEcCCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC----
Confidence            99998      78899999999999999999999965 79999999999999999999999999999999999998    


Q ss_pred             cccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                    +..|++++.|++|+|||..
T Consensus       302 --------------g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          302 --------------GSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             --------------SSEEEEEETTCCEEEEECC
T ss_pred             --------------CCEEEEEeCCCeEEEEeCC
Confidence                          8899999999999999973

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.6e-42  Score=306.78  Aligned_cols=270  Identities=17%  Similarity=0.206  Sum_probs=230.2

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      .+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.....+..|...+       ..                ..+
T Consensus         8 ~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v-------~~----------------~~~   63 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPV-------RA----------------GKF   63 (304)
T ss_dssp             EEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-------EE----------------EEE
T ss_pred             eecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcE-------EE----------------EEE
Confidence            3458999999999999 88999999999999999999876665555443321       10                111


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA  237 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  237 (407)
                      .+.   ...+++++.|+.+++||..+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++++.. ....+.+
T Consensus        64 ~~~---~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~-~~~~~~~  138 (304)
T 2ynn_A           64 IAR---KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA-LEQTFEG  138 (304)
T ss_dssp             EGG---GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTE-EEEEECC
T ss_pred             eCC---CCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcc-hhhhhcc
Confidence            112   2357889999999999999999999999999999999999999 7999999999999999987752 4567789


Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcC--CCCCEEEEeeCCCeEE
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSP--DKSSVFGSSAEDGILN  314 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~--~~~~ll~s~~~d~~i~  314 (407)
                      |...|.+++|+|.++.+|++|+.||.|++||++.      ..+...+. .|...|..++|+|  ++. +|++|+.|++|+
T Consensus       139 h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~  211 (304)
T 2ynn_A          139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIK  211 (304)
T ss_dssp             CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC------SSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEE
T ss_pred             cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC------CCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEE
Confidence            9999999999996789999999999999999987      55555554 5668899999987  556 457999999999


Q ss_pred             EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      +||+++++.+..+.+|..+|+.++|+|+                  +..|++++.|++|+|||+.      +++++..+.
T Consensus       212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~------------------~~~l~s~s~Dg~i~iWd~~------~~~~~~~~~  267 (304)
T 2ynn_A          212 IWDYQTKSCVATLEGHMSNVSFAVFHPT------------------LPIIISGSEDGTLKIWNSS------TYKVEKTLN  267 (304)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSS------------------SSEEEEEETTSCEEEEETT------TCCEEEEEC
T ss_pred             EEeCCCCccceeeCCCCCCEEEEEECCC------------------CCEEEEEcCCCeEEEEECC------CCceeeecc
Confidence            9999999999999999999999999998                  7889999999999999998      677888889


Q ss_pred             hcccceeEeeccC
Q 046899          395 KFKSHIFGCDKSC  407 (407)
Q Consensus       395 ~h~~~v~~~~~s~  407 (407)
                      +|...|++++|++
T Consensus       268 ~~~~~~~~~~~~~  280 (304)
T 2ynn_A          268 VGLERSWCIATHP  280 (304)
T ss_dssp             CSSSSEEEEEECT
T ss_pred             CCCccEEEEEECC
Confidence            9999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.5e-42  Score=310.35  Aligned_cols=267  Identities=16%  Similarity=0.214  Sum_probs=230.8

Q ss_pred             eeCCCceEEEEEeCC---CCeEEEEeeCCCcEEEEeCcCCCCc--ccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899           80 IIHPGEVNRIRELPQ---NSKIVATHTDSPDVLIWDVEAQPNR--HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~---~~~~l~tg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      .+|.+.|++++|+|.   ++++|+||+.|++|+|||+......  ..+.+|..                          .
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~--------------------------~   82 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL--------------------------G   82 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--------------------------C
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC--------------------------C
Confidence            479999999999873   4679999999999999998765321  12233322                          1


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                      +..+........+++++.|+.+++||+.+++.+..+..|...+.+++|+|++ .+|++|+.||.|++||++++.  ....
T Consensus        83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~--~~~~  159 (321)
T 3ow8_A           83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGK--KEYS  159 (321)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCS--EEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCc--eeEE
Confidence            1222222333457889999999999999999999999999999999999999 899999999999999999887  5677


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      +..|...|.+++|+| ++++|++|+.||.|++||+++      ++++.++.+|..+|++++|+|++++| ++|+.|++|+
T Consensus       160 ~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~spd~~~l-~s~s~dg~i~  231 (321)
T 3ow8_A          160 LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT------GKLLHTLEGHAMPIRSLTFSPDSQLL-VTASDDGYIK  231 (321)
T ss_dssp             EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCCSSCCCEEEECTTSCEE-EEECTTSCEE
T ss_pred             ecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEcccCCceeEEEEcCCCCEE-EEEcCCCeEE
Confidence            778899999999999 999999999999999999998      88999999999999999999999955 7999999999


Q ss_pred             EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      +||++..+....+.+|..+|++++|+|+                  +..|++++.|++|+|||+.      +++++..+.
T Consensus       232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~------------------~~~l~s~s~D~~v~iwd~~------~~~~~~~~~  287 (321)
T 3ow8_A          232 IYDVQHANLAGTLSGHASWVLNVAFCPD------------------DTHFVSSSSDKSVKVWDVG------TRTCVHTFF  287 (321)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTT------------------SSEEEEEETTSCEEEEETT------TTEEEEEEC
T ss_pred             EEECCCcceeEEEcCCCCceEEEEECCC------------------CCEEEEEeCCCcEEEEeCC------CCEEEEEEc
Confidence            9999998888999999999999999998                  8899999999999999998      788888899


Q ss_pred             hcccceeEeeccC
Q 046899          395 KFKSHIFGCDKSC  407 (407)
Q Consensus       395 ~h~~~v~~~~~s~  407 (407)
                      +|.+.|++++|++
T Consensus       288 ~h~~~v~~v~~s~  300 (321)
T 3ow8_A          288 DHQDQVWGVKYNG  300 (321)
T ss_dssp             CCSSCEEEEEECT
T ss_pred             CCCCcEEEEEECC
Confidence            9999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.1e-41  Score=304.66  Aligned_cols=286  Identities=16%  Similarity=0.171  Sum_probs=223.8

Q ss_pred             eeEEEEeec---ccccCccceEEEEeec--ccCcccCC-cceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           39 SLSCRWGPQ---LEQATYKNRQRLYLSE--QFNEEARS-PFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        39 ~~s~~~~~~---~~~~~~~~~~~i~~~~--~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      ..++.|.|+   +++++ +.+.|+|.+.  .+...... ..........|...|++++|+| ++ .|++|+.||+|+|||
T Consensus        33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd  109 (344)
T 4gqb_B           33 LEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-ER-GILVASDSGAVELWE  109 (344)
T ss_dssp             EEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEe
Confidence            456788885   44444 6677888544  12222211 1223344556889999999999 54 678999999999999


Q ss_pred             CcCCCCccccc----CcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee
Q 046899          113 VEAQPNRHAVL----GAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG  188 (407)
Q Consensus       113 ~~~~~~~~~~~----~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~  188 (407)
                      +.+++......    +|..                          .+..+........+++++.|+.+++||+.+++.+.
T Consensus       110 ~~~~~~~~~~~~~~~~H~~--------------------------~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~  163 (344)
T 4gqb_B          110 LDENETLIVSKFCKYEHDD--------------------------IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS  163 (344)
T ss_dssp             ECTTSSCEEEEEEEECCSS--------------------------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccCCCceeEeeccccCCCC--------------------------CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            99876554321    2322                          11122222333568889999999999999999999


Q ss_pred             eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KAHNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                      .+.+|...|++++|+|++..+|++++.|++|++||+++++  ....+  ..+...+.+++|+|.++++|++|+.||.|++
T Consensus       164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~  241 (344)
T 4gqb_B          164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL  241 (344)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             EEcCcCCceEEEEecCCCCCceeeeccccccccccccccc--eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence            9999999999999999987789999999999999999888  34433  4566679999999977889999999999999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI  346 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~  346 (407)
                      ||+++      ++++.++.+|...|++++|+|++..+||+|+.|++|+|||+++++ +..+.+|...|++++|+|+    
T Consensus       242 wd~~~------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~----  310 (344)
T 4gqb_B          242 VDTKS------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPL----  310 (344)
T ss_dssp             EESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSS----
T ss_pred             EECCC------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCC----
Confidence            99998      899999999999999999999987667899999999999999865 4567889999999999998    


Q ss_pred             cccceeeeeEeeCccc-eeeeEEEeeeEEEeeccc
Q 046899          347 ETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~~  380 (407)
                                    +. .+++++.|++|++|++..
T Consensus       311 --------------~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          311 --------------NHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             --------------STTEEEEEETTSCEEEEECCC
T ss_pred             --------------CCeEEEEEcCCCeEEEEECCC
Confidence                          54 567899999999999973

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.4e-41  Score=309.46  Aligned_cols=274  Identities=15%  Similarity=0.192  Sum_probs=221.2

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeC------CCcEEEEeCcCCCCcccc----cCcCCCCC------CC-------CCcE
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTD------SPDVLIWDVEAQPNRHAV----LGAADSHP------DL-------DQSV  136 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~------dg~i~vwd~~~~~~~~~~----~~~~~~~~------~~-------d~~i  136 (407)
                      ..|++.|++++|+| +|++||+|+.      |+.|++|+..++.....+    ..|...+.      +.       |++|
T Consensus        39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred             ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence            36999999999999 9999999997      778999998776544332    22322221      11       8999


Q ss_pred             EEEeccccccc------cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEE
Q 046899          137 VLWSIQDHVSA------LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEF  210 (407)
Q Consensus       137 ~~w~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  210 (407)
                      ++||+.++...      ...+...+..+........+++++.++.+++||..+++.+..+.+|...|++++|+|++..+|
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence            99999876332      123444455555555566789999999999999999999999999999999999999986789


Q ss_pred             EEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC
Q 046899          211 CSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA  290 (407)
Q Consensus       211 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~  290 (407)
                      ++++.|+.|++||+++++.........+...+.+++|+|.++.+|++|+.|+.|++||+++      ++++.++.+|...
T Consensus       198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~------~~~~~~~~~~~~~  271 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN------PDSAQTSAVHSQN  271 (357)
T ss_dssp             EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC------GGGCEEECCCSSC
T ss_pred             eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC------CcEeEEEecccee
Confidence            9999999999999998874333445567788999999996678999999999999999998      8899999999999


Q ss_pred             EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcC-cchhccccceeeeeEeeCccceeeeEEE
Q 046899          291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSS-DMLDIETKLLTSIGMHLIHGRLLVCLTM  369 (407)
Q Consensus       291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~~~~~~~~~~~~~~~~~~~i~~~~~  369 (407)
                      |++++|+|++..+||+|+.|++|+|||+++++.+.. .+|..+|++++||| |                  +..|++++.
T Consensus       272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d------------------~~~l~s~s~  332 (357)
T 4g56_B          272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLD------------------HSKFTTVGW  332 (357)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECSSS------------------TTEEEEEET
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEEEeCCC------------------CCEEEEEcC
Confidence            999999999876778999999999999998766554 47999999999998 5                  778999999


Q ss_pred             eeeEEEeecc
Q 046899          370 VKVLEIWRMI  379 (407)
Q Consensus       370 d~~i~iwd~~  379 (407)
                      |++|++|++.
T Consensus       333 Dg~v~iW~~~  342 (357)
T 4g56_B          333 DHKVLHHHLP  342 (357)
T ss_dssp             TSCEEEEECC
T ss_pred             CCeEEEEECC
Confidence            9999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9e-41  Score=303.81  Aligned_cols=271  Identities=18%  Similarity=0.277  Sum_probs=229.3

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CCC--------CCcEEEEec
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PDL--------DQSVVLWSI  141 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~--------d~~i~~w~~  141 (407)
                      ...+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.....+..+...+      ++.        |+.+++|++
T Consensus        48 ~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             heeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            445568999999999999 88999999999999999999887766665554432      111        899999999


Q ss_pred             ccccc------ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC
Q 046899          142 QDHVS------ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD  215 (407)
Q Consensus       142 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~  215 (407)
                      .....      .+..+...+....... +..+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++|+.
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~  204 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGAC  204 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-CEEEEEeC
Confidence            76421      2333443333222211 2347889999999999999999999999999999999999998 89999999


Q ss_pred             CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEE
Q 046899          216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLC  293 (407)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~  293 (407)
                      |+.|++||++++.  ....+.+|...|++++|+| ++++|++|+.||.|++||++.      .+.+..+..  +...|++
T Consensus       205 d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~------~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          205 DASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELMTYSHDNIICGITS  275 (340)
T ss_dssp             TSCEEEEETTTCS--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTCCSCEEE
T ss_pred             CCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCC------CcEEEEEccCCcccceEE
Confidence            9999999999887  6788889999999999999 899999999999999999998      667766653  3357999


Q ss_pred             EEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899          294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL  373 (407)
Q Consensus       294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i  373 (407)
                      ++|+|+++++ ++|+.|+.|++||+.+.+.+..+.+|..+|++++|+||                  +..|++|+.|++|
T Consensus       276 ~~~s~~g~~l-~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d------------------g~~l~s~s~D~~i  336 (340)
T 1got_B          276 VSFSKSGRLL-LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD------------------GMAVATGSWDSFL  336 (340)
T ss_dssp             EEECTTSSEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT------------------SSCEEEEETTSCE
T ss_pred             EEECCCCCEE-EEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCC------------------CCEEEEEcCCccE
Confidence            9999999965 79999999999999999988999999999999999998                  8899999999999


Q ss_pred             EEee
Q 046899          374 EIWR  377 (407)
Q Consensus       374 ~iwd  377 (407)
                      +|||
T Consensus       337 ~iWd  340 (340)
T 1got_B          337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-39  Score=298.17  Aligned_cols=273  Identities=18%  Similarity=0.243  Sum_probs=230.8

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCC------C--------CCcEEEEec
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPD------L--------DQSVVLWSI  141 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------~--------d~~i~~w~~  141 (407)
                      ...+.+|.+.|++++|+| ++++|+||+.||+|++||..+......+..+...+..      .        |+.+.+|++
T Consensus        57 ~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            345568999999999999 8899999999999999999887766555544333221      1        899999998


Q ss_pred             ccc--------ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC-CcEEEE
Q 046899          142 QDH--------VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS-AQEFCS  212 (407)
Q Consensus       142 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s  212 (407)
                      ...        ...+..+...+...........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|.. .++|++
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s  215 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS  215 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence            643        12333455555555555555678999999999999999999999999999999999998852 279999


Q ss_pred             EeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--CCC
Q 046899          213 VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--SAA  290 (407)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~~~  290 (407)
                      |+.||.|++||+++++  +...+..|...|++++|+| ++++|++|+.|+.|++||++.      ...+..+..+  ...
T Consensus       216 gs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~------~~~~~~~~~~~~~~~  286 (354)
T 2pbi_B          216 GGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRA------DREVAIYSKESIIFG  286 (354)
T ss_dssp             EETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTCCSC
T ss_pred             EeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCC------CcEEEEEcCCCcccc
Confidence            9999999999999988  6788889999999999999 899999999999999999998      6666666543  457


Q ss_pred             EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe
Q 046899          291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV  370 (407)
Q Consensus       291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d  370 (407)
                      +.+++|+|++.+| ++|+.|++|++||+.+++.+..+.+|..+|++++|+||                  +..|++++.|
T Consensus       287 ~~~~~~s~~g~~l-~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd------------------g~~l~sgs~D  347 (354)
T 2pbi_B          287 ASSVDFSLSGRLL-FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD------------------GTAFCSGSWD  347 (354)
T ss_dssp             EEEEEECTTSSEE-EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT------------------SSCEEEEETT
T ss_pred             eeEEEEeCCCCEE-EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCC------------------CCEEEEEcCC
Confidence            9999999999955 79999999999999999988899999999999999999                  8899999999


Q ss_pred             eeEEEee
Q 046899          371 KVLEIWR  377 (407)
Q Consensus       371 ~~i~iwd  377 (407)
                      ++|+||+
T Consensus       348 ~~v~vW~  354 (354)
T 2pbi_B          348 HTLRVWA  354 (354)
T ss_dssp             SEEEEEC
T ss_pred             CCEEecC
Confidence            9999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-39  Score=301.32  Aligned_cols=276  Identities=21%  Similarity=0.276  Sum_probs=228.0

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEec
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSI  141 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~  141 (407)
                      ...+.+|.+.|++++|+| ++++|+||+.||+|+|||+.+++....+..|...+...              |+.+++|++
T Consensus        59 ~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             eecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            345568999999999999 88999999999999999999887777777666554433              899999998


Q ss_pred             cccc---------cccccCCCCCcccccCCC-CCccccccCCCCCCCCCCCCcCceeeE-----eecccCEEEEEECCCC
Q 046899          142 QDHV---------SALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESPSIGARGKY-----LGHEDTVEDVQFCPSS  206 (407)
Q Consensus       142 ~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~-----~~~~~~v~~l~~~~~~  206 (407)
                      ....         ..+..+...+........ ...+++++.|+.+++||+.+++.+..+     .+|...|.+++|+|.+
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  217 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN  217 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence            7531         123333333333222222 345889999999999999999988777     5789999999998854


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899          207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG  286 (407)
Q Consensus       207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  286 (407)
                      +++|++|+.|++|++||++.... ....+.+|...|++++|+| ++++|++|+.||.|++||+++      +.++..+..
T Consensus       218 ~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~------~~~~~~~~~  289 (380)
T 3iz6_a          218 ANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRT------GHQLQVYNR  289 (380)
T ss_dssp             CCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTT------TEEEEEECC
T ss_pred             CCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCC------CcEEEEecc
Confidence            48999999999999999985432 5677889999999999999 999999999999999999998      777777765


Q ss_pred             CC-------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc----ccCCCcccCCCCcCcchhccccceeeee
Q 046899          287 HS-------AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY----GELKYPIIHPAYSSDMLDIETKLLTSIG  355 (407)
Q Consensus       287 h~-------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~----~~~~~~v~~~~~s~d~~~~~~~~~~~~~  355 (407)
                      +.       ..|++++|+|+|++| ++|+.||.|++||+...+....+    .+|...|++++|+||             
T Consensus       290 ~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-------------  355 (380)
T 3iz6_a          290 EPDRNDNELPIVTSVAFSISGRLL-FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD-------------  355 (380)
T ss_dssp             CCSSSCCSSCSCSEEEECSSSSEE-EEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS-------------
T ss_pred             cccccccccCceEEEEECCCCCEE-EEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC-------------
Confidence            43       348999999999965 69999999999999987776655    578899999999999             


Q ss_pred             EeeCccceeeeEEEeeeEEEeecc
Q 046899          356 MHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       356 ~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                           +..|++|+.|++|+||++.
T Consensus       356 -----g~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          356 -----GSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             -----SSEEEEECTTSCEEEEECC
T ss_pred             -----CCEEEEeeCCCCEEEEecC
Confidence                 8899999999999999987

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.5e-40  Score=321.66  Aligned_cols=350  Identities=16%  Similarity=0.202  Sum_probs=255.2

Q ss_pred             CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      ....+.|.|+   ++++. ++.+++|.   ...     ......+.+|.+.|++++|+| ++++||+|+.||+|+|||+.
T Consensus        20 ~~~~~~~spdg~~l~~~~-~~~v~l~~---~~~-----~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~   89 (611)
T 1nr0_A           20 TAVVLGNTPAGDKIQYCN-GTSVYTVP---VGS-----LTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTT   89 (611)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEE---TTC-----SSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESS
T ss_pred             ceeEEeeCCCCCEEEeCC-CCEEEEec---CCC-----cccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECC
Confidence            4455677774   55655 55788992   111     122334558999999999999 89999999999999999997


Q ss_pred             CCCC--cccccCcCCCCCCC------------------CCcEEEEeccccccccccCCCCCcccccCCCCC-ccccccCC
Q 046899          115 AQPN--RHAVLGAADSHPDL------------------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANS-KNASKSGG  173 (407)
Q Consensus       115 ~~~~--~~~~~~~~~~~~~~------------------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  173 (407)
                      +++.  ...+.+|...+.++                  .+.+.+||.......+..+...+..+...+... .+++++.|
T Consensus        90 ~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D  169 (611)
T 1nr0_A           90 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD  169 (611)
T ss_dssp             STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             CCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCC
Confidence            5443  23344444332211                  246888886655555666666655555555544 48899999


Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec-------ccCcceEEEE
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-------AHNADIHCVD  246 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~l~  246 (407)
                      +.+++||...++....+.+|...|.+++|+|++ .+|++|+.|++|++||+.+++  ....+.       +|...|.+++
T Consensus       170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~  246 (611)
T 1nr0_A          170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLT  246 (611)
T ss_dssp             SCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEE
T ss_pred             CeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEE
Confidence            999999999998889999999999999999999 899999999999999999887  455542       7999999999


Q ss_pred             ecCCCCCEEEEEeCCCcEEEEeCCCCCCC-------------------------------------CCCCceeeecCCCC
Q 046899          247 WNPHDVNLILTGSADNSIHMFDRRKLTSD-------------------------------------GVGSPIHKFEGHSA  289 (407)
Q Consensus       247 ~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-------------------------------------~~~~~~~~~~~h~~  289 (407)
                      |+| ++++|++|+.|++|++||+++....                                     ..+.+...+.+|..
T Consensus       247 ~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~  325 (611)
T 1nr0_A          247 WSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK  325 (611)
T ss_dssp             ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred             ECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC
Confidence            999 9999999999999999999862100                                     00112345568999


Q ss_pred             CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-ccCCCcccCCCCcCc-------------chhcccc------
Q 046899          290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-GELKYPIIHPAYSSD-------------MLDIETK------  349 (407)
Q Consensus       290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d-------------~~~~~~~------  349 (407)
                      .|++++|+|++++| ++++.|++|++||+.+++....+ ..|...|.+++|+++             +|+...+      
T Consensus       326 ~v~~l~~spdg~~l-~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~  404 (611)
T 1nr0_A          326 AITALSSSADGKTL-FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK  404 (611)
T ss_dssp             CEEEEEECTTSSEE-EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTS
T ss_pred             CEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccc
Confidence            99999999999965 69999999999999987766554 456666666666543             1111100      


Q ss_pred             --------------------------------------------ceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC
Q 046899          350 --------------------------------------------LLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP  385 (407)
Q Consensus       350 --------------------------------------------~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~  385 (407)
                                                                  .......+.+.+..|++|+.|++|+|||+.....  
T Consensus       405 ~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~--  482 (611)
T 1nr0_A          405 AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--  482 (611)
T ss_dssp             CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--
T ss_pred             eeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce--
Confidence                                                        0001233445577899999999999999972110  


Q ss_pred             hHHHHHHHhhcccceeEeeccC
Q 046899          386 EEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       386 ~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                        ..+.. .+|...|++|+|||
T Consensus       483 --~~~~~-~~h~~~v~~v~fsp  501 (611)
T 1nr0_A          483 --SEVKT-IVHPAEITSVAFSN  501 (611)
T ss_dssp             --EEEEE-EECSSCEEEEEECT
T ss_pred             --eeeec-cCCCCceEEEEECC
Confidence              01122 57999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-39  Score=317.74  Aligned_cols=339  Identities=22%  Similarity=0.338  Sum_probs=273.7

Q ss_pred             hhhhhhccCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE
Q 046899           15 RYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE   91 (407)
Q Consensus        15 ~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~   91 (407)
                      .+.+|+.+...+. .+.  ...-+..++.|.|+   +++++.++.+++|.         ..........+|...|++++|
T Consensus       203 ~v~~w~~~~~~~~-~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~---------~~~~~~~~~~~~~~~v~~v~~  270 (577)
T 2ymu_A          203 TVKLWNRNGQLLQ-TLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN---------RNGQLLQTLTGHSSSVNGVAF  270 (577)
T ss_dssp             EEEEECTTSCEEE-EEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC---------TTSCEEEEECCCSSCEEEEEE
T ss_pred             EEEEEeCCCcEEE-EEe--cCCCCEEEEEECCCCCEEEEEeCCCEEEEEe---------CCCCEEEEEecCCCCEEEEEE
Confidence            4567776554332 222  23445667788774   78889999999992         112233455689999999999


Q ss_pred             eCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCC------CC--------CCcEEEEecccccc-ccccCCCCCc
Q 046899           92 LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHP------DL--------DQSVVLWSIQDHVS-ALAAEPGSAK  156 (407)
Q Consensus        92 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~--------d~~i~~w~~~~~~~-~~~~~~~~~~  156 (407)
                      +| ++++|++++.|+.|++||... +....+.+|...+.      +.        |+.+++|++..... .+..+...+.
T Consensus       271 ~~-d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~  348 (577)
T 2ymu_A          271 RP-DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW  348 (577)
T ss_dssp             CT-TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE
T ss_pred             cC-CCCEEEEEeCCCEEEEEeCCC-cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE
Confidence            99 889999999999999999753 44444555543321      11        89999999876532 3334444444


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                      .+........+++++.++.+++|+. +++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||.. ++  ....+.
T Consensus       349 ~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~--~~~~~~  423 (577)
T 2ymu_A          349 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLT  423 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CC--EEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CC--EEEEec
Confidence            4444555567888999999999995 567788899999999999999999 789999999999999954 44  577788


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      +|...|++++|+| ++++|++++.|+.|++||..       ++.+..+.+|...|++++|+|++++| ++++.|++|++|
T Consensus       424 ~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-------~~~~~~~~~~~~~v~~~~~spd~~~l-as~~~d~~i~iw  494 (577)
T 2ymu_A          424 GHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLW  494 (577)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-------SCEEEEEECCSSCEEEEEECTTSCEE-EEEETTSEEEEE
T ss_pred             CCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC-------CCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEE
Confidence            9999999999999 89999999999999999964       57889999999999999999999955 799999999999


Q ss_pred             eCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhc
Q 046899          317 DHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKF  396 (407)
Q Consensus       317 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h  396 (407)
                      |. +++.++.+.+|..+|++++|+||                  +.+|++++.|++|+|||..       ++++..+.+|
T Consensus       495 ~~-~~~~~~~~~~h~~~v~~l~~s~d------------------g~~l~s~~~dg~v~lwd~~-------~~~~~~~~~h  548 (577)
T 2ymu_A          495 NR-NGQLLQTLTGHSSSVRGVAFSPD------------------GQTIASASDDKTVKLWNRN-------GQLLQTLTGH  548 (577)
T ss_dssp             ET-TSCEEEEEECCSSCEEEEEECTT------------------SSCEEEEETTSEEEEECTT-------SCEEEEEECC
T ss_pred             cC-CCCEEEEEeCCCCCEEEEEEcCC------------------CCEEEEEECcCEEEEEeCC-------CCEEEEEcCC
Confidence            95 56788899999999999999999                  8899999999999999964       6778889999


Q ss_pred             ccceeEeeccC
Q 046899          397 KSHIFGCDKSC  407 (407)
Q Consensus       397 ~~~v~~~~~s~  407 (407)
                      .+.|++++||+
T Consensus       549 ~~~v~~~~fs~  559 (577)
T 2ymu_A          549 SSSVWGVAFSP  559 (577)
T ss_dssp             SSCEEEEEECT
T ss_pred             CCCEEEEEEcC
Confidence            99999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=302.98  Aligned_cols=276  Identities=16%  Similarity=0.178  Sum_probs=213.4

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      .|...|.+++|+| +|++|++++ |+++|+||............+...     ........          ...+..+..
T Consensus        28 ~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~-----~~~~~~~~----------~~~v~~~~~   90 (344)
T 4gqb_B           28 CMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEG-----FCSAGVQT----------EAGVADLTW   90 (344)
T ss_dssp             SCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGG-----GCSEEEEE----------SSCEEEEEE
T ss_pred             cccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcc-----eeeeeecc----------CCCEEEEEE
Confidence            4788899999999 899998887 678999974321100000000000     00000000          111111111


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeE----eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKY----LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                      .. +..+++++.||.|++||+.+++.+..+    .+|...|++++|+|++ ++|++|+.|++|++||+++++  ....+.
T Consensus        91 s~-d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~--~~~~~~  166 (344)
T 4gqb_B           91 VG-ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQV--VLSSYR  166 (344)
T ss_dssp             ET-TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEEC
T ss_pred             eC-CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc--EEEEEc
Confidence            11 134778999999999999988766543    4799999999999999 899999999999999999988  788889


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec--CCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      +|...|++++|+|.+..+|++|+.||.|++||+++      ++++..+.  .|...+.+++|+|++..+|++|+.|++|+
T Consensus       167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC------PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS  240 (344)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS------SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             CcCCceEEEEecCCCCCceeeeccccccccccccc------cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence            99999999999995557899999999999999998      78887775  35668999999998877889999999999


Q ss_pred             EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      +||+++++.+..+.+|..+|++++|+|+.                 ..+|++++.|++|+|||+.      +++++ .+.
T Consensus       241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g-----------------~~~lasgs~D~~i~vwd~~------~~~~~-~~~  296 (344)
T 4gqb_B          241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHS-----------------VPFLASLSEDCSLAVLDSS------LSELF-RSQ  296 (344)
T ss_dssp             EEESCC--CCEEEECCSSCEEEEEECSSS-----------------SCCEEEEETTSCEEEECTT------CCEEE-EEC
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCC-----------------CeEEEEEeCCCeEEEEECC------CCcEE-EEc
Confidence            99999999999999999999999999981                 3578899999999999998      45443 468


Q ss_pred             hcccceeEeeccC
Q 046899          395 KFKSHIFGCDKSC  407 (407)
Q Consensus       395 ~h~~~v~~~~~s~  407 (407)
                      +|.+.|++|+|||
T Consensus       297 ~H~~~V~~v~~sp  309 (344)
T 4gqb_B          297 AHRDFVRDATWSP  309 (344)
T ss_dssp             CCSSCEEEEEECS
T ss_pred             CCCCCEEEEEEeC
Confidence            9999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.9e-40  Score=320.54  Aligned_cols=327  Identities=13%  Similarity=0.149  Sum_probs=251.2

Q ss_pred             CCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899           36 VWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW  111 (407)
Q Consensus        36 ~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  111 (407)
                      .-+..++.|.|+    +++++.|+.+++|..        .+......+.+|.+.|++++|+| ++++||+|+.|++|++|
T Consensus       147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~--------~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lw  217 (611)
T 1nr0_A          147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEG--------PPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLY  217 (611)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTSCEEEEET--------TTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             CCCceEEEECCCCCeEEEEEeCCCeEEEEEC--------CCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEE
Confidence            446678889874    789999999999921        11222334557999999999999 89999999999999999


Q ss_pred             eCcCCCCccccc-------CcCCCCC------CC--------CCcEEEEeccccccccccCCCC-C--cccccCCCCCcc
Q 046899          112 DVEAQPNRHAVL-------GAADSHP------DL--------DQSVVLWSIQDHVSALAAEPGS-A--KSTASGGANSKN  167 (407)
Q Consensus       112 d~~~~~~~~~~~-------~~~~~~~------~~--------d~~i~~w~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~  167 (407)
                      |+.+++....+.       +|...+.      +.        |++|++||+.++.......... .  ...........+
T Consensus       218 d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (611)
T 1nr0_A          218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL  297 (611)
T ss_dssp             ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred             ECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence            998877655542       4443322      22        9999999998764322211110 0  000000123567


Q ss_pred             ccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee------------
Q 046899          168 ASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE------------  235 (407)
Q Consensus       168 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------  235 (407)
                      ++++.++.+++|+...++....+.+|...|++++|+|++ .+|++++.|++|++||+.++..  ...+            
T Consensus       298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~--~~~~~~~h~~~v~~~~  374 (611)
T 1nr0_A          298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGIS--NRVFPDVHATMITGIK  374 (611)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE--EECSSCSCSSCEEEEE
T ss_pred             EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCce--eeecccCCcceEEEEE
Confidence            889999999999999888888888999999999999999 8999999999999999986541  1100            


Q ss_pred             ----------------------------------------------------------------------cccCcceEEE
Q 046899          236 ----------------------------------------------------------------------KAHNADIHCV  245 (407)
Q Consensus       236 ----------------------------------------------------------------------~~~~~~v~~l  245 (407)
                                                                                            ..|...+.++
T Consensus       375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v  454 (611)
T 1nr0_A          375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV  454 (611)
T ss_dssp             ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred             ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence                                                                                  0123457889


Q ss_pred             EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCc--eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-CC
Q 046899          246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSP--IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK-IG  322 (407)
Q Consensus       246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~-~~  322 (407)
                      +|+| ++++|++|+.|+.|++||+..      ...  +.. .+|...|++++|+|+|++| ++++.|++|++||+.+ ++
T Consensus       455 a~sp-dg~~lasgs~D~~v~lwd~~~------~~~~~~~~-~~h~~~v~~v~fspdg~~l-as~s~d~~v~~w~~~~~~~  525 (611)
T 1nr0_A          455 ALSN-DKQFVAVGGQDSKVHVYKLSG------ASVSEVKT-IVHPAEITSVAFSNNGAFL-VATDQSRKVIPYSVANNFE  525 (611)
T ss_dssp             EECT-TSCEEEEEETTSEEEEEEEET------TEEEEEEE-EECSSCEEEEEECTTSSEE-EEEETTSCEEEEEGGGTTE
T ss_pred             EEeC-CCCEEEEeCCCCeEEEEEccC------Cceeeeec-cCCCCceEEEEECCCCCEE-EEEcCCCCEEEEEcCCCCc
Confidence            9999 999999999999999999986      332  334 5799999999999999965 7999999999999987 44


Q ss_pred             cccc--cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH-HH-HHHhhc-c
Q 046899          323 EKQD--YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE-VL-AELDKF-K  397 (407)
Q Consensus       323 ~~~~--~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~-~~-~~~~~h-~  397 (407)
                      ....  +..|..+|++++||||                  +..|++++.|++|+|||+.      .++ ++ ..+.+| .
T Consensus       526 ~~~~~~~~~H~~~V~~v~fspd------------------g~~lasgs~D~~v~lW~~~------~~~~~~~~~~~~h~~  581 (611)
T 1nr0_A          526 LAHTNSWTFHTAKVACVSWSPD------------------NVRLATGSLDNSVIVWNMN------KPSDHPIIIKGAHAM  581 (611)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTT------------------SSEEEEEETTSCEEEEETT------CTTSCCEEETTSSTT
T ss_pred             eeeeeeeeecccceeEEEECCC------------------CCEEEEEECCCcEEEEECC------CcccccchhhccCcc
Confidence            4443  3448999999999999                  8999999999999999997      332 23 457789 8


Q ss_pred             cceeEeeccC
Q 046899          398 SHIFGCDKSC  407 (407)
Q Consensus       398 ~~v~~~~~s~  407 (407)
                      +.|++++|++
T Consensus       582 ~~v~~v~fs~  591 (611)
T 1nr0_A          582 SSVNSVIWLN  591 (611)
T ss_dssp             SCEEEEEEEE
T ss_pred             cCeeEEEEcC
Confidence            9999999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.1e-38  Score=283.51  Aligned_cols=274  Identities=20%  Similarity=0.267  Sum_probs=229.2

Q ss_pred             eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899           75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      ......+|.+.|++++|+| ++++|++|+.||.|++|++.+++....+.+|...+                         
T Consensus        15 ~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v-------------------------   68 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI-------------------------   68 (312)
T ss_dssp             EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE-------------------------
T ss_pred             eEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCce-------------------------
Confidence            3455568999999999999 88999999999999999998877666555543321                         


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                       ..+........+++++.++.+++||+.+++.+..+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++  ....
T Consensus        69 -~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~--~~~~  144 (312)
T 4ery_A           69 -SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK--CLKT  144 (312)
T ss_dssp             -EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC--EEEE
T ss_pred             -EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCE--EEEE
Confidence             111122223457889999999999999999999999999999999999998 899999999999999999887  6778


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      +..|..+|.+++|+| ++++|++|+.||.|++||+++      ++.+..+. .+..++..++|+|+++++ ++++.|+.|
T Consensus       145 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i  216 (312)
T 4ery_A          145 LPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS------GQCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTL  216 (312)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCSSCCCEEEEEECTTSSEE-EEEETTTEE
T ss_pred             ecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CceeeEEeccCCCceEEEEECCCCCEE-EEEcCCCeE
Confidence            889999999999999 899999999999999999998      77777664 466789999999999965 699999999


Q ss_pred             EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899          314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL  393 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  393 (407)
                      ++||+++++.+..+.++......+..               ......+..|++++.|+.|++||+.      +++++..+
T Consensus       217 ~iwd~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~sg~~dg~i~vwd~~------~~~~~~~~  275 (312)
T 4ery_A          217 KLWDYSKGKCLKTYTGHKNEKYCIFA---------------NFSVTGGKWIVSGSEDNLVYIWNLQ------TKEIVQKL  275 (312)
T ss_dssp             EEEETTTTEEEEEECSSCCSSSCCCE---------------EEECSSSCEEEECCTTSCEEEEETT------TCCEEEEE
T ss_pred             EEEECCCCcEEEEEEecCCceEEEEE---------------EEEeCCCcEEEEECCCCEEEEEECC------Cchhhhhh
Confidence            99999998888888877665444322               1111236789999999999999998      67788889


Q ss_pred             hhcccceeEeeccC
Q 046899          394 DKFKSHIFGCDKSC  407 (407)
Q Consensus       394 ~~h~~~v~~~~~s~  407 (407)
                      .+|.+.|.+++|++
T Consensus       276 ~~h~~~v~~~~~~p  289 (312)
T 4ery_A          276 QGHTDVVISTACHP  289 (312)
T ss_dssp             CCCSSCEEEEEECS
T ss_pred             hccCCcEEEEeecC
Confidence            99999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.5e-37  Score=301.02  Aligned_cols=318  Identities=22%  Similarity=0.372  Sum_probs=254.7

Q ss_pred             hhhhhhhhccCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEE
Q 046899           13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRI   89 (407)
Q Consensus        13 ~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l   89 (407)
                      +..+++|+.+...+.. +.  ...-+...+.|.|+   +++++.++.+++|.         ..........+|.+.|.++
T Consensus       242 d~~i~~w~~~~~~~~~-~~--~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~---------~~~~~~~~~~~h~~~v~~~  309 (577)
T 2ymu_A          242 DKTVKLWNRNGQLLQT-LT--GHSSSVNGVAFRPDGQTIASASDDKTVKLWN---------RNGQLLQTLTGHSSSVWGV  309 (577)
T ss_dssp             TSCEEEECTTSCEEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEE---------TTSCEEEEECCCSSCEEEE
T ss_pred             CCEEEEEeCCCCEEEE-Ee--cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe---------CCCcEEEEEecCCCCeEEE
Confidence            3456778776554432 22  23445667788774   77888999999992         1112234455899999999


Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CCC--------CCcEEEEeccccc-cccccCCCC
Q 046899           90 RELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PDL--------DQSVVLWSIQDHV-SALAAEPGS  154 (407)
Q Consensus        90 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~--------d~~i~~w~~~~~~-~~~~~~~~~  154 (407)
                      +|+| ++++|++++.||+|++||..... ...+.+|...+      ++.        ++.+++|+..... ..+..+...
T Consensus       310 ~~~~-~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~  387 (577)
T 2ymu_A          310 AFSP-DGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS  387 (577)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSC
T ss_pred             EECC-CCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCC
Confidence            9999 88999999999999999987543 33333433322      221        8999999976542 233444555


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                      +..+........+++++.++.+++||. +++.+..+.+|...|++++|+|++ .+|++++.|+.|++||.. ++  ....
T Consensus       388 v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~-~~--~~~~  462 (577)
T 2ymu_A          388 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRN-GQ--LLQT  462 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT-SC--EEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECC-CC--EEEE
Confidence            444445555567889999999999995 567788899999999999999999 899999999999999964 44  5777


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      +.+|...|.+++|+| ++++|++++.|+.|++||..       ++++.++.+|...|++++|+|++++| |+++.|+.|+
T Consensus       463 ~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~  533 (577)
T 2ymu_A          463 LTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVK  533 (577)
T ss_dssp             EECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETT-------SCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEE
T ss_pred             EcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCC-------CCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEE
Confidence            889999999999999 99999999999999999964       68899999999999999999999976 6999999999


Q ss_pred             EEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899          315 IWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR  377 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd  377 (407)
                      +||. +++.+..+.+|..+|++++|+||                  +.+|++++.|++|++||
T Consensus       534 lwd~-~~~~~~~~~~h~~~v~~~~fs~d------------------g~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          534 LWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------GQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EECT-TSCEEEEEECCSSCEEEEEECTT------------------SSCEEEEETTSCEEEEC
T ss_pred             EEeC-CCCEEEEEcCCCCCEEEEEEcCC------------------CCEEEEEeCCCEEEEeC
Confidence            9996 56788899999999999999999                  88999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.4e-37  Score=275.00  Aligned_cols=283  Identities=17%  Similarity=0.184  Sum_probs=226.2

Q ss_pred             CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      .-+...+.|.|+   +++++.|+.+++|   ++..     .........|..+|.+++|+| ++++|++|+.|++|++||
T Consensus        13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lW---d~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVELW---NYET-----QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEE---ETTT-----TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEE---ECCC-----CceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            345677888874   8899999999999   2211     122334457999999999999 889999999999999999


Q ss_pred             CcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-ceeeEe
Q 046899          113 VEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-ARGKYL  191 (407)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~  191 (407)
                      +.+++....+.+|...+                          ..+...+....+++++.|+.+++||+..+. ....+.
T Consensus        84 ~~~~~~~~~~~~h~~~v--------------------------~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  137 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYI--------------------------RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (304)
T ss_dssp             TTTCCEEEEEECCSSCE--------------------------EEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred             CCCCcEEEEEeCCCCcE--------------------------EEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence            99888777666664431                          111122223457889999999999998764 456788


Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC-CCCEEEEEeCCCcEEEEeCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH-DVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~  270 (407)
                      +|...|.+++|+|.++.+|++|+.|++|++||+++... .......|...+..++|+|. ++.+|++|+.|+.|++||++
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~  216 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence            99999999999996548999999999999999987763 23334466788999999762 56799999999999999999


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  350 (407)
                      +      ++++.++.+|...|.+++|+|+++. |++|+.||+|++||+++++.+..+..+...+++++|+|+.       
T Consensus       217 ~------~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  282 (304)
T 2ynn_A          217 T------KSCVATLEGHMSNVSFAVFHPTLPI-IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG-------  282 (304)
T ss_dssp             T------TEEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC-------
T ss_pred             C------CccceeeCCCCCCEEEEEECCCCCE-EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC-------
Confidence            8      8899999999999999999999995 5799999999999999999999998888888888887761       


Q ss_pred             eeeeeEeeCccc-eeeeEEEeeeEEEeecc
Q 046899          351 LTSIGMHLIHGR-LLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       351 ~~~~~~~~~~~~-~i~~~~~d~~i~iwd~~  379 (407)
                                +. .+++|+ +..+.+|++.
T Consensus       283 ----------~~~~~asg~-~~g~~~~~~~  301 (304)
T 2ynn_A          283 ----------RKNYIASGF-DNGFTVLSLG  301 (304)
T ss_dssp             ----------GGGCEEEEE-TTEEEEEECC
T ss_pred             ----------CceEEEEec-CCceEEEEec
Confidence                      23 455655 4457788876

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.8e-38  Score=285.35  Aligned_cols=290  Identities=15%  Similarity=0.206  Sum_probs=222.0

Q ss_pred             CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      +...+.|.|+   +++++.|+.+++|-..     ............+|.+.|++++|+| ++++||+|+.|++|++||+.
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~-----~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~   91 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTE-----GDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKN   91 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEE-----TTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcC-----CCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEcc
Confidence            5667899884   8899999999999221     1111111222247999999999999 88999999999999999987


Q ss_pred             CCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC---ceee
Q 046899          115 AQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG---ARGK  189 (407)
Q Consensus       115 ~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~  189 (407)
                      ...  +...+.+|...                          +..+........+++++.|+.+++||+....   .+..
T Consensus        92 ~~~~~~~~~~~~h~~~--------------------------v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           92 QDDFECVTTLEGHENE--------------------------VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             CC-EEEEEEECCCSSC--------------------------EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEEccCCCCC--------------------------ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence            653  23334444322                          1111222233468889999999999987654   3556


Q ss_pred             EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                      +.+|...|.+++|+|++ .+|++|+.|+.|++||++++...+...+.+|...|++++|+| ++++|++|+.||.|++||.
T Consensus       146 ~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             ECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred             ecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEecc
Confidence            77899999999999999 799999999999999998876334567889999999999999 9999999999999999997


Q ss_pred             CCCCCCC---------CCCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc---------cccccC
Q 046899          270 RKLTSDG---------VGSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK---------QDYGEL  330 (407)
Q Consensus       270 ~~~~~~~---------~~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~---------~~~~~~  330 (407)
                      .......         ...++.++.+ |...|.+++|+|++..| ++++.|+.|++|+.......         ....+|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  302 (345)
T 3fm0_A          224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGAL-ATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH  302 (345)
T ss_dssp             ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCE-EEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred             ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEE-EEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence            5422110         0123445555 88999999999999965 79999999999998764322         123578


Q ss_pred             CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          331 KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       331 ~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      ...|++++|+|+.                 ...|++++.|++|+||++.
T Consensus       303 ~~~V~~v~~~p~~-----------------~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          303 SQDVNCVAWNPKE-----------------PGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             SSCEEEEEECSSS-----------------TTEEEEEETTSCEEEEEEC
T ss_pred             cCcEeEeEEeCCC-----------------ceEEEEcCCCCcEEEEEec
Confidence            8899999999981                 3589999999999999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.9e-38  Score=290.48  Aligned_cols=287  Identities=16%  Similarity=0.219  Sum_probs=222.4

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      .....+|.+.|++++|+| ++++||+|+ ++.+++|++.+++....+..+.....+. ..+..       .........+
T Consensus        57 ~~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~-~~~~~-------~~~~~~~~~v  126 (393)
T 1erj_A           57 LHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP-ENLNT-------SSSPSSDLYI  126 (393)
T ss_dssp             EEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------CCCCBE
T ss_pred             eEEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccc-ccccc-------cccCCCceeE
Confidence            345567999999999999 889999987 6899999999887666554432211000 00000       0000000011


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  235 (407)
                      ..+........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++  ....+
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~  203 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTL  203 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe--eEEEE
Confidence            122233334568889999999999999999999999999999999999999 799999999999999999877  44444


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-------cCCCCCEEEEEEcCCCCCEEEEee
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-------EGHSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                       .+...+.+++|+|.++++|++|+.||.|++||+++      +..+..+       .+|...|.+++|+|++.+| ++|+
T Consensus       204 -~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l-~s~s  275 (393)
T 1erj_A          204 -SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET------GFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-VSGS  275 (393)
T ss_dssp             -ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT------CCEEEEEC------CCCSSCEEEEEECTTSSEE-EEEE
T ss_pred             -EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC------CcEEEeecccccCCCCCCCCEEEEEECCCCCEE-EEEe
Confidence             46678999999997889999999999999999998      6777666       5799999999999999965 7999


Q ss_pred             CCCeEEEEeCCCCC------------cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          309 EDGILNIWDHEKIG------------EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       309 ~d~~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                      .|++|++||+++..            ....+.+|...|.+++|+++                  +.+|++++.|++|++|
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------~~~l~sgs~D~~v~iw  337 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------------------DEYILSGSKDRGVLFW  337 (393)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG------------------GCEEEEEETTSEEEEE
T ss_pred             CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC------------------CCEEEEEeCCCeEEEE
Confidence            99999999998643            23455677778888888777                  7899999999999999


Q ss_pred             eccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          377 RMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       377 d~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      |+.      +++++..+.+|.+.|.+++|++
T Consensus       338 d~~------~~~~~~~l~~h~~~v~~v~~~~  362 (393)
T 1erj_A          338 DKK------SGNPLLMLQGHRNSVISVAVAN  362 (393)
T ss_dssp             ETT------TCCEEEEEECCSSCEEEEEECS
T ss_pred             ECC------CCeEEEEECCCCCCEEEEEecC
Confidence            998      6777888999999999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.8e-37  Score=287.88  Aligned_cols=267  Identities=14%  Similarity=0.256  Sum_probs=224.2

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      .+.-|..++.|.|.   +++++.|+.+++|   ++....     ......+|.+.|++++|+| ++++|++|+.|++|++
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vw---d~~~~~-----~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~i  176 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASEDATIKVW---DYETGD-----FERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKL  176 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEE---ETTTCC-----CCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCE
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEE---ECCCCc-----EEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEE
Confidence            34557778899874   8899999999999   222111     1234457999999999999 8889999999999999


Q ss_pred             EeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecccccc--ccccCCCCCcccccCCCCCccccccCCC
Q 046899          111 WDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVS--ALAAEPGSAKSTASGGANSKNASKSGGN  174 (407)
Q Consensus       111 wd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (407)
                      ||+.+.++...+.+|...+...              |++|++||+.++..  .+..+...+...........+++++.|+
T Consensus       177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence            9999888877777776543322              99999999987743  3444555555555555566789999999


Q ss_pred             CCCCCCCCCcCceeeEeecccCEEEEEECCCC-------------------CcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899          175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSS-------------------AQEFCSVGDDSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~-------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  235 (407)
                      .+++||+.+++....+.+|...|.+++|+|++                   ..+|++|+.|+.|++||++++.  +...+
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~  334 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTL  334 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEE
T ss_pred             eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEE
Confidence            99999999999999999999999999999962                   2589999999999999999888  67888


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      .+|...|.+++|+| ++++|++|+.||.|++||+++      ++++.++.+|...|++++|+|++.+| ++|+.|++|++
T Consensus       335 ~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~v  406 (410)
T 1vyh_C          335 VGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN------KRCMKTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKV  406 (410)
T ss_dssp             ECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTT------SCCCEEEECCSSCEEEEEECSSSSCE-EEEETTSEEEE
T ss_pred             ECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC------CceEEEEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEE
Confidence            89999999999999 999999999999999999998      88999999999999999999999976 79999999999


Q ss_pred             EeCC
Q 046899          316 WDHE  319 (407)
Q Consensus       316 wd~~  319 (407)
                      |+++
T Consensus       407 W~~r  410 (410)
T 1vyh_C          407 WECR  410 (410)
T ss_dssp             EC--
T ss_pred             EeCC
Confidence            9964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-38  Score=294.29  Aligned_cols=296  Identities=14%  Similarity=0.238  Sum_probs=236.0

Q ss_pred             CccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC----CCCcccccCcCC
Q 046899           52 TYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA----QPNRHAVLGAAD  127 (407)
Q Consensus        52 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~----~~~~~~~~~~~~  127 (407)
                      +.|+.+++|.   .......   .......|.+.|++++|+| ++++|++|+.||.|++||+.+    ......+.+|..
T Consensus        42 ~~d~~v~iw~---~~~~~~~---~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~  114 (416)
T 2pm9_A           42 STDSSLELWS---LLAADSE---KPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS  114 (416)
T ss_dssp             CCCCCCEEEE---SSSGGGC---SCSCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS
T ss_pred             CCCCeEEEEE---ccCCCCC---cEEEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCcc
Confidence            7888999992   2222111   2333446999999999999 888999999999999999987    334455555554


Q ss_pred             CCCCC---------------CCcEEEEeccccc------ccc-----ccCCCCCcccccCCC-CCccccccCCCCCCCCC
Q 046899          128 SHPDL---------------DQSVVLWSIQDHV------SAL-----AAEPGSAKSTASGGA-NSKNASKSGGNGDKPLE  180 (407)
Q Consensus       128 ~~~~~---------------d~~i~~w~~~~~~------~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d  180 (407)
                      .+..+               |+.|++||+....      ...     ..+...+..+..... ...+++++.++.+++||
T Consensus       115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  194 (416)
T 2pm9_A          115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD  194 (416)
T ss_dssp             CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred             ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence            43221               8999999998765      222     223344444444444 45688899999999999


Q ss_pred             CCCcCceeeEeec------ccCEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCCCceeeec-ccCcceEEEEecCC
Q 046899          181 SPSIGARGKYLGH------EDTVEDVQFCPSSAQEFCSVGDDS---CLILWDARSGSTPAVKVEK-AHNADIHCVDWNPH  250 (407)
Q Consensus       181 ~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~  250 (407)
                      +.+++.+..+..+      ...|.+++|+|++..+|++++.|+   .|++||++++.. ....+. +|...|.+++|+|.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~  273 (416)
T 2pm9_A          195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQ  273 (416)
T ss_dssp             TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSS
T ss_pred             CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCC
Confidence            9999988888776      789999999999867999999999   999999998743 355666 89999999999997


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-  329 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-  329 (407)
                      ++++|++++.||.|++||+++      ++++..+..|...|++++|+|+++.+|++++.|+.|++||+........... 
T Consensus       274 ~~~~l~s~~~dg~v~~wd~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~  347 (416)
T 2pm9_A          274 DEHLLLSSGRDNTVLLWNPES------AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQET  347 (416)
T ss_dssp             CSSCEEEEESSSEEEEECSSS------CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---
T ss_pred             CCCeEEEEeCCCCEEEeeCCC------CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccc
Confidence            789999999999999999998      8999999999999999999999955778999999999999998765543322 


Q ss_pred             ----------------------------------CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEE
Q 046899          330 ----------------------------------LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEI  375 (407)
Q Consensus       330 ----------------------------------~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~i  375 (407)
                                                        +..++++++||||                  +..|++++.|++|+|
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------------------g~~la~~~~d~~v~~  409 (416)
T 2pm9_A          348 ETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG------------------GKLVQITPDGKGVSI  409 (416)
T ss_dssp             -------------------CCSCCCSSCCCCCSTTCCCSCCCEEETT------------------TEEECBCTTSSCBCC
T ss_pred             cccccCCcccccccccccccccccccccccCCccccCCccceEEeeC------------------CeEEEEeCCCCeEEE
Confidence                                              4556667777777                  889999999999999


Q ss_pred             eecc
Q 046899          376 WRMI  379 (407)
Q Consensus       376 wd~~  379 (407)
                      |++.
T Consensus       410 w~~~  413 (416)
T 2pm9_A          410 TNPK  413 (416)
T ss_dssp             BCCC
T ss_pred             EEec
Confidence            9997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.7e-38  Score=284.64  Aligned_cols=279  Identities=16%  Similarity=0.222  Sum_probs=213.0

Q ss_pred             EEEeeCCC-ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc---ccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899           77 FKTIIHPG-EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA---VLGAADSHPDLDQSVVLWSIQDHVSALAAEP  152 (407)
Q Consensus        77 ~~~~~h~~-~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~  152 (407)
                      ..+.+|.+ .|++++|+| ++++||+|+.|++|+|||+.++.....   ..+|..                         
T Consensus         9 ~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~-------------------------   62 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR-------------------------   62 (345)
T ss_dssp             EEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS-------------------------
T ss_pred             eeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC-------------------------
Confidence            34457987 999999999 899999999999999999986532211   112221                         


Q ss_pred             CCCcccccCCCCCccccccCCCCCCCCCCCCc--CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-
Q 046899          153 GSAKSTASGGANSKNASKSGGNGDKPLESPSI--GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-  229 (407)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-  229 (407)
                       .+..+........+++++.|+.+++|+....  +.+..+.+|...|.+++|+|++ ++|++|+.|+.|++||+++... 
T Consensus        63 -~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~  140 (345)
T 3fm0_A           63 -TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEY  140 (345)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCE
T ss_pred             -cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCe
Confidence             1112222223356888999999999988765  4567888999999999999999 8999999999999999987652 


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                      .....+..|...|.+++|+| ++.+|++|+.|+.|++||.+...    ..+..++.+|...|++++|+|++.+| ++++.
T Consensus       141 ~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~~l~~sp~g~~l-~s~s~  214 (345)
T 3fm0_A          141 ECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD----WVCCATLEGHESTVWSLAFDPSGQRL-ASCSD  214 (345)
T ss_dssp             EEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECTTSSEE-EEEET
T ss_pred             EEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceEEEEECCCCCEE-EEEeC
Confidence            23456778999999999999 89999999999999999998721    23567889999999999999999965 79999


Q ss_pred             CCeEEEEeCCCCCccc---------------cccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899          310 DGILNIWDHEKIGEKQ---------------DYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL  373 (407)
Q Consensus       310 d~~i~vwd~~~~~~~~---------------~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i  373 (407)
                      |++|++||........               .+.+ |...|++++|+++                  +..+++++.|++|
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------------------~~~l~s~~~d~~i  276 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL------------------TGALATACGDDAI  276 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT------------------TCCEEEEETTSCE
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC------------------CCEEEEEeCCCeE
Confidence            9999999975432221               2222 5666777777776                  7889999999999


Q ss_pred             EEeeccccccC--ChH-HHHHHHhhcccceeEeeccC
Q 046899          374 EIWRMIDLIYR--PEE-EVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       374 ~iwd~~~~~~~--~~~-~~~~~~~~h~~~v~~~~~s~  407 (407)
                      ++|+.......  +.. .......+|.+.|++|+|+|
T Consensus       277 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  313 (345)
T 3fm0_A          277 RVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP  313 (345)
T ss_dssp             EEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred             EEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence            99998632110  000 01122468999999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.8e-37  Score=274.60  Aligned_cols=285  Identities=16%  Similarity=0.165  Sum_probs=226.0

Q ss_pred             ccCCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899           34 NLVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL  109 (407)
Q Consensus        34 ~~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~  109 (407)
                      .+.-+..++.|.|    .+++++.|+.+++|...   ..............+|...|++++|+| ++++|++|+.|++|+
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~---~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT---GDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLR   90 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEE---EETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCC---CCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEE
Confidence            3455677788876    37899999999999322   111111122344568999999999999 899999999999999


Q ss_pred             EEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee
Q 046899          110 IWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK  189 (407)
Q Consensus       110 vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~  189 (407)
                      +||+.+++....+.+|...+       .-                   +........+++++.|+.+++||+. ++.+..
T Consensus        91 ~wd~~~~~~~~~~~~h~~~v-------~~-------------------~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~  143 (319)
T 3frx_A           91 LWDVATGETYQRFVGHKSDV-------MS-------------------VDIDKKASMIISGSRDKTIKVWTIK-GQCLAT  143 (319)
T ss_dssp             EEETTTTEEEEEEECCSSCE-------EE-------------------EEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred             EEECCCCCeeEEEccCCCcE-------EE-------------------EEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence            99999887776666664331       11                   1112223457889999999999986 467778


Q ss_pred             EeecccCEEEEEECCCC-----CcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899          190 YLGHEDTVEDVQFCPSS-----AQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSI  264 (407)
Q Consensus       190 ~~~~~~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i  264 (407)
                      +.+|...|.+++|+|..     ...+++++.|+.|++||+++.+  ....+.+|...|.+++|+| ++++|++|+.||.|
T Consensus       144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i  220 (319)
T 3frx_A          144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASP-DGTLIASAGKDGEI  220 (319)
T ss_dssp             ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECT-TSSEEEEEETTCEE
T ss_pred             EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeE
Confidence            88999999999999853     1489999999999999999877  6777889999999999999 99999999999999


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc--------cCCCcccC
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG--------ELKYPIIH  336 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~--------~~~~~v~~  336 (407)
                      ++||++.      ++++.++.. ...|.+++|+|++.++ ++++ ++.+++|++........+.        .+...+.+
T Consensus       221 ~iwd~~~------~~~~~~~~~-~~~v~~~~~sp~~~~l-a~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  291 (319)
T 3frx_A          221 MLWNLAA------KKAMYTLSA-QDEVFSLAFSPNRYWL-AAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS  291 (319)
T ss_dssp             EEEETTT------TEEEEEEEC-CSCEEEEEECSSSSEE-EEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred             EEEECCC------CcEEEEecC-CCcEEEEEEcCCCCEE-EEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence            9999998      788888875 4689999999999854 5665 5669999998765444332        23456777


Q ss_pred             CCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          337 PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       337 ~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      ++||||                  +..|++|+.|++|+|||+.
T Consensus       292 ~~~spd------------------g~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          292 LAWSAD------------------GQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             EEECTT------------------SSEEEEEETTSCEEEEEEE
T ss_pred             EEECCC------------------CCEEEEeecCceEEEEEEe
Confidence            888888                  8999999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-37  Score=281.96  Aligned_cols=284  Identities=15%  Similarity=0.188  Sum_probs=209.8

Q ss_pred             eEEEeeCCCceEEEEE-----eCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899           76 KFKTIIHPGEVNRIRE-----LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAA  150 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~-----~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~  150 (407)
                      ...+.+|.+.|++++|     ++.++++|+||+.|++|++||+.+.+.....           + ..       ...+..
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-----------~-~~-------~~~l~~   74 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-----------G-IP-------HKALTG   74 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-----------E-EE-------EEEECC
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-----------c-cc-------cchhcc
Confidence            3345689999999999     6658899999999999999999765321100           0 00       001111


Q ss_pred             CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      +...+..+........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||++.....
T Consensus        75 h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~  153 (343)
T 2xzm_R           75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF  153 (343)
T ss_dssp             CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee
Confidence            22222222233334557889999999999999999999999999999999999999 89999999999999999843211


Q ss_pred             ceeeecccCcceEEEEecCCCC----------CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC
Q 046899          231 AVKVEKAHNADIHCVDWNPHDV----------NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK  300 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~~~----------~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~  300 (407)
                      .......|...|.+++|+| ++          .+|++++.||.|++||.+       ......+.+|...|.+++|+|++
T Consensus       154 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~h~~~v~~~~~s~~g  225 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN-------FQIRYTFKAHESNVNHLSISPNG  225 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT-------TEEEEEEECCSSCEEEEEECTTS
T ss_pred             eeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC-------CceeEEEcCccccceEEEECCCC
Confidence            1111237889999999999 54          799999999999999954       47788899999999999999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          301 SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      ++| ++|+.|+.|++||+...........+...|.+++|+|+                  +..+ +++.|+.|+|||+..
T Consensus       226 ~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~------------------~~~l-a~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          226 KYI-ATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK------------------LQWV-AVGTDQGVKIFNLMT  285 (343)
T ss_dssp             SEE-EEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSS------------------SCEE-EEEESSCEEEEESSS
T ss_pred             CEE-EEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCC------------------CCEE-EEECCCCEEEEEeCC
Confidence            965 79999999999999654444333345567888888887                  5444 456788999999873


Q ss_pred             cccCC-------hHHHHHHHhhcccceeEeeccC
Q 046899          381 LIYRP-------EEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       381 ~~~~~-------~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .....       .........+|...|.+++|++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  319 (343)
T 2xzm_R          286 QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA  319 (343)
T ss_dssp             CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred             CCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence            21110       0000111237889999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-37  Score=278.40  Aligned_cols=275  Identities=14%  Similarity=0.199  Sum_probs=216.8

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC-----cccccCcCCCCCCCCCcEEEEecccccccccc
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN-----RHAVLGAADSHPDLDQSVVLWSIQDHVSALAA  150 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~  150 (407)
                      ...+.+|.+.|++++|+|.++++|+||+.|++|++||+.....     ...+.+|.                        
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~------------------------   65 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------------------------   65 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS------------------------
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc------------------------
Confidence            3455689999999999996678999999999999999875432     12222222                        


Q ss_pred             CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                        ..+...........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++. .  
T Consensus        66 --~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~-~--  139 (319)
T 3frx_A           66 --HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKG-Q--  139 (319)
T ss_dssp             --SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTS-C--
T ss_pred             --ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-C--
Confidence              222222233334568899999999999999999999999999999999999998 8999999999999999974 3  


Q ss_pred             ceeeecccCcceEEEEecCC-----CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEE
Q 046899          231 AVKVEKAHNADIHCVDWNPH-----DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG  305 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~-----~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~  305 (407)
                      ....+.+|...|.++.|.|.     ++..+++|+.|+.|++||++.      .+....+.+|...|.+++|+|++.+| +
T Consensus       140 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~~~h~~~v~~~~~sp~g~~l-~  212 (319)
T 3frx_A          140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEADFIGHNSNINTLTASPDGTLI-A  212 (319)
T ss_dssp             EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEEECCCCSCEEEEEECTTSSEE-E
T ss_pred             eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhheeecCCCCcEEEEEEcCCCCEE-E
Confidence            46777899999999999983     244899999999999999998      78888999999999999999999955 7


Q ss_pred             EeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC
Q 046899          306 SSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP  385 (407)
Q Consensus       306 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~  385 (407)
                      +|+.|++|++||+.+.+.+..+.. ..+|.+++|+|+                  +..+++++ +..+++|++.......
T Consensus       213 s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~------------------~~~la~~~-~~~i~v~~~~~~~~~~  272 (319)
T 3frx_A          213 SAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPN------------------RYWLAAAT-ATGIKVFSLDPQYLVD  272 (319)
T ss_dssp             EEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSS------------------SSEEEEEE-TTEEEEEEETTEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCC------------------CCEEEEEc-CCCcEEEEeCcCeeee
Confidence            999999999999999887777765 457889999888                  66666665 4569999986311100


Q ss_pred             h--HHHHHHHhhcccceeEeeccC
Q 046899          386 E--EEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       386 ~--~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .  .+.......|...|.+++||+
T Consensus       273 ~~~~~~~~~~~~~~~~v~~~~~sp  296 (319)
T 3frx_A          273 DLRPEFAGYSKAAEPHAVSLAWSA  296 (319)
T ss_dssp             EECCCCTTCCGGGCCCEEEEEECT
T ss_pred             ccCccccccccCcCcceeEEEECC
Confidence            0  001111235677899999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.7e-36  Score=270.24  Aligned_cols=251  Identities=19%  Similarity=0.248  Sum_probs=200.1

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC--CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ--PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      ..+|.+.|++++|+| ++++||||+.|++|+|||+...  +....+.+|...         ++.+.              
T Consensus         5 ~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~---------V~~v~--------------   60 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP---------VWRVD--------------   60 (297)
T ss_dssp             CCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC---------EEEEE--------------
T ss_pred             ccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC---------eEEEE--------------
Confidence            347999999999999 8999999999999999999753  444555555433         11111              


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTPAV  232 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~  232 (407)
                      +.+. .....+++++.|+.+++||..+++  .+..+.+|...|.+++|+|+  + .+|++++.|+.|++||+++......
T Consensus        61 ~s~~-~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~  138 (297)
T 2pm7_B           61 WAHP-KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSP  138 (297)
T ss_dssp             ECCG-GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred             ecCC-CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceee
Confidence            0000 012457889999999999998764  55667789999999999997  5 7999999999999999987642224


Q ss_pred             eeecccCcceEEEEecCCC------------CCEEEEEeCCCcEEEEeCCCCCCCCCCC----ceeeecCCCCCEEEEEE
Q 046899          233 KVEKAHNADIHCVDWNPHD------------VNLILTGSADNSIHMFDRRKLTSDGVGS----PIHKFEGHSAAVLCVQW  296 (407)
Q Consensus       233 ~~~~~~~~~v~~l~~~~~~------------~~~l~tg~~dg~i~vwd~~~~~~~~~~~----~~~~~~~h~~~v~~v~~  296 (407)
                      ..+.+|...|.+++|+|..            +++|++|+.|+.|++||++.      ..    ...++.+|...|.+++|
T Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~------~~~~~~~~~~l~~H~~~V~~v~~  212 (297)
T 2pm7_B          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS------DAQTYVLESTLEGHSDWVRDVAW  212 (297)
T ss_dssp             EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET------TTTEEEEEEEECCCSSCEEEEEE
T ss_pred             eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC------CCceEEEEEEecCCCCceEEEEE
Confidence            5667899999999999931            57999999999999999987      44    56788999999999999


Q ss_pred             cCCC--CCEEEEeeCCCeEEEEeCCCCCc---cccc--ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE
Q 046899          297 SPDK--SSVFGSSAEDGILNIWDHEKIGE---KQDY--GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM  369 (407)
Q Consensus       297 ~~~~--~~ll~s~~~d~~i~vwd~~~~~~---~~~~--~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  369 (407)
                      +|++  ..+||+++.|++|++||++....   ...+  ..+...|.+++|+|+                  +..|++++.
T Consensus       213 sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------g~~las~~~  274 (297)
T 2pm7_B          213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS------------------GNVLALSGG  274 (297)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS------------------SCCEEEEET
T ss_pred             CCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC------------------CCEEEEEcC
Confidence            9996  33568999999999999987431   1122  456778888999998                  889999999


Q ss_pred             eeeEEEeecc
Q 046899          370 VKVLEIWRMI  379 (407)
Q Consensus       370 d~~i~iwd~~  379 (407)
                      |++|+||+..
T Consensus       275 D~~v~lw~~~  284 (297)
T 2pm7_B          275 DNKVTLWKEN  284 (297)
T ss_dssp             TSCEEEEEEC
T ss_pred             CCcEEEEEEC
Confidence            9999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-37  Score=276.23  Aligned_cols=291  Identities=15%  Similarity=0.158  Sum_probs=210.9

Q ss_pred             cCCCeeEEEEeec-ccccCccceEEEEeecccCcccCCcceeeEEE--ee-CCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           35 LVWPSLSCRWGPQ-LEQATYKNRQRLYLSEQFNEEARSPFVKKFKT--II-HPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        35 ~~~p~~s~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~-h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      +.-+..++.|.|. +++++.|+.+++|.   ....    .......  .+ |.+.|++++|+| ++++||+|+.|++|+|
T Consensus        13 h~~~v~~~~~s~~~las~~~D~~i~lw~---~~~~----~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~i   84 (330)
T 2hes_X           13 YKEKIWSFDFSQGILATGSTDRKIKLVS---VKYD----DFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSI   84 (330)
T ss_dssp             CSSCEEEEEEETTEEEEEESSSCEEEEE---CSSS----CCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             CCCceeeeccCCCEEEEEcCCCEEEEEE---ecCC----CeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEE
Confidence            4456777888874 78999999999992   2211    1112222  23 999999999999 8899999999999999


Q ss_pred             EeCcCCCC-------cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899          111 WDVEAQPN-------RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS  183 (407)
Q Consensus       111 wd~~~~~~-------~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~  183 (407)
                      ||+.....       ...+.+|                          ...+..+........+++++.|+.+++||+..
T Consensus        85 w~~~~~~~~~~~~~~~~~~~~h--------------------------~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~  138 (330)
T 2hes_X           85 WAKEESADRTFEMDLLAIIEGH--------------------------ENEVKGVAWSNDGYYLATCSRDKSVWIWETDE  138 (330)
T ss_dssp             EEC-------CCCEEEEEEC------------------------------CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred             EEcccCcCccccceeEEEEcCC--------------------------CCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence            99864321       1111222                          22222222333345688899999999999843


Q ss_pred             ----cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC--CCEEEE
Q 046899          184 ----IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD--VNLILT  257 (407)
Q Consensus       184 ----~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~l~t  257 (407)
                          .+.+..+.+|...|.+++|+|++ .+|++|+.|++|++||.+++...+...+.+|...|.+++|+| +  +.+|++
T Consensus       139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s  216 (330)
T 2hes_X          139 SGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCS  216 (330)
T ss_dssp             TCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEE
T ss_pred             CCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEE
Confidence                24566788999999999999998 899999999999999998764235677889999999999999 6  678999


Q ss_pred             EeCCCcEEEEeCCCCCCCCC--CCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC--ccc-ccccCC
Q 046899          258 GSADNSIHMFDRRKLTSDGV--GSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG--EKQ-DYGELK  331 (407)
Q Consensus       258 g~~dg~i~vwd~~~~~~~~~--~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~--~~~-~~~~~~  331 (407)
                      |+.|+.|++||++.......  ..+...+.. |...|.+++|++++  +|++++.||+|++||+..++  ... ...+|.
T Consensus       217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~  294 (330)
T 2hes_X          217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHG  294 (330)
T ss_dssp             EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred             EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence            99999999999875211000  033445555 89999999999766  35799999999999987653  222 234566


Q ss_pred             C-cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          332 Y-PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       332 ~-~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      . .|.+++|+|.                ..+..|++++.|++|+|||+.
T Consensus       295 ~~~v~~v~~~~~----------------~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          295 VYEINVVKWLEL----------------NGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             TSCEEEEEEC---------------------CCEEEEETTSEEEEEEC-
T ss_pred             cceEEEEEEecC----------------CCceEEEEecCCCcEEEEEec
Confidence            5 7888888772                016789999999999999986

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.7e-36  Score=272.17  Aligned_cols=272  Identities=19%  Similarity=0.303  Sum_probs=217.7

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-----ccccCcCCCCCCC--------------CCcEEE
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-----HAVLGAADSHPDL--------------DQSVVL  138 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~--------------d~~i~~  138 (407)
                      .+.||.+.|++|+|+|+++++||||+.||+|+|||+.+.+..     ..+.+|...+.+.              |+.+++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            456899999999999976899999999999999999876532     3344554433222              899999


Q ss_pred             Eeccccccccc--cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc-eeeEeecccCEEEEEECCCCC-cEEEEEe
Q 046899          139 WSIQDHVSALA--AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA-RGKYLGHEDTVEDVQFCPSSA-QEFCSVG  214 (407)
Q Consensus       139 w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~-~~l~s~~  214 (407)
                      |+.........  .................+++++.|+.+++||...... .....+|...+.+++|++++. .++++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence            99887644322  2222333333444456788899999999999876544 334557899999999988753 4688999


Q ss_pred             CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEE
Q 046899          215 DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCV  294 (407)
Q Consensus       215 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v  294 (407)
                      .|+.|++||+++++  ....+.+|...|++++|+| ++++|++|+.||.|++||++.      .+++..+.. ...|.++
T Consensus       193 ~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~------~~~~~~~~~-~~~v~~~  262 (340)
T 4aow_A          193 WDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE------GKHLYTLDG-GDIINAL  262 (340)
T ss_dssp             TTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEEEEC-SSCEEEE
T ss_pred             CCCEEEEEECCCCc--eeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc------CceeeeecC-CceEEee
Confidence            99999999999887  6778889999999999999 999999999999999999998      788888875 4689999


Q ss_pred             EEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc---------ccCCCcccCCCCcCcchhccccceeeeeEeeCccceee
Q 046899          295 QWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY---------GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV  365 (407)
Q Consensus       295 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~---------~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~  365 (407)
                      +|+|++. ++ +++.|+.|++||++....+..+         ..|...|++++|+||                  +..|+
T Consensus       263 ~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------------------g~~l~  322 (340)
T 4aow_A          263 CFSPNRY-WL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD------------------GQTLF  322 (340)
T ss_dssp             EECSSSS-EE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT------------------SSEEE
T ss_pred             ecCCCCc-ee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC------------------CCEEE
Confidence            9999876 54 7778999999999876554433         356778888999888                  88999


Q ss_pred             eEEEeeeEEEeecc
Q 046899          366 CLTMVKVLEIWRMI  379 (407)
Q Consensus       366 ~~~~d~~i~iwd~~  379 (407)
                      +|+.|++|+|||+.
T Consensus       323 sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          323 AGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEETTSCEEEEEEE
T ss_pred             EEeCCCEEEEEeCC
Confidence            99999999999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.9e-36  Score=277.46  Aligned_cols=317  Identities=16%  Similarity=0.190  Sum_probs=233.0

Q ss_pred             hhhhhhhccCceEEEee--eecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCC-------------ccee
Q 046899           14 DRYTQWKSLVPVLYDWL--ANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARS-------------PFVK   75 (407)
Q Consensus        14 ~~~~~w~~~~~~~y~~l--~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~   75 (407)
                      +.+-.|.+..|...+..  ...++.-+...+.|.|+   +++++ ++.+++|...   .....             ....
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~---~g~~~~~l~~~~~~~~~~~~~~  115 (393)
T 1erj_A           40 DYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS---DGSLVARLSDDSAANKDPENLN  115 (393)
T ss_dssp             SCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETT---TCCEEEEECC------------
T ss_pred             ceEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEec---CCCEEEEecCcccccccccccc
Confidence            34446666666544332  22345556778899885   66665 5678899332   11000             0000


Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      ......+...|++++|+| ++++|++|+.|++|++||+.+++....+.+|...+         +                
T Consensus       116 ~~~~~~~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v---------~----------------  169 (393)
T 1erj_A          116 TSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI---------Y----------------  169 (393)
T ss_dssp             -----CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE---------E----------------
T ss_pred             ccccCCCceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCE---------E----------------
Confidence            001112344599999999 88999999999999999999877666665554321         1                


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                       .+........+++++.|+.+++||+.+++....+. +...+.+++|+| ++ .+|++|+.|+.|++||++++.  ....
T Consensus       170 -~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~--~~~~  244 (393)
T 1erj_A          170 -SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGF--LVER  244 (393)
T ss_dssp             -EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCC--EEEE
T ss_pred             -EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCc--EEEe
Confidence             11111223457889999999999999988877765 667899999999 55 899999999999999999877  3433


Q ss_pred             e-------cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC------CCCCceeeecCCCCCEEEEEEcCCCC
Q 046899          235 E-------KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD------GVGSPIHKFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       235 ~-------~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~~~~~  301 (407)
                      +       .+|...|.+++|+| ++++|++|+.||.|++||++.....      ..+.+...+.+|...|.+++|+|++.
T Consensus       245 ~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  323 (393)
T 1erj_A          245 LDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE  323 (393)
T ss_dssp             EC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred             ecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC
Confidence            3       57899999999999 9999999999999999999763210      00345667889999999999999999


Q ss_pred             CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +| ++|+.|+.|++||+++++.+..+.+|..+|.+++|+++            ..+...+..+++|+.|++|+||++.
T Consensus       324 ~l-~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~------------~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          324 YI-LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG------------SSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             EE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------CTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EE-EEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC------------cCcCCCCCEEEEECCCCcEEECccc
Confidence            65 69999999999999999999999999999999888764            2222336789999999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-35  Score=266.04  Aligned_cols=282  Identities=18%  Similarity=0.280  Sum_probs=229.3

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      .+.-+..++.|.|+   +++++.|+.+++|-.   ..   .  .......+|...|.+++|+| ++++|++|+.||.|++
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~---~~---~--~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA---YD---G--KFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEET---TT---C--CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeC---CC---c--ccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEE
Confidence            44557788899884   889999999999921   11   1  12334457999999999999 8899999999999999


Q ss_pred             EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899          111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY  190 (407)
Q Consensus       111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  190 (407)
                      ||+.+++....+.+|...       +..                   .........+++++.++.+++||+.+++.+..+
T Consensus        92 wd~~~~~~~~~~~~~~~~-------v~~-------------------~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  145 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNY-------VFC-------------------CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL  145 (312)
T ss_dssp             EETTTCCEEEEEECCSSC-------EEE-------------------EEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EECCCCcEEEEEcCCCCC-------EEE-------------------EEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence            999988766666555332       111                   111222345788999999999999999999999


Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee-ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                      ..|...|.+++|+|++ .+|++++.||.|++||+++++  .... ...+...+.+++|+| ++++|++++.||.|++||+
T Consensus       146 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~  221 (312)
T 4ery_A          146 PAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDY  221 (312)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEET
T ss_pred             cCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence            9999999999999998 799999999999999999887  3443 345677899999999 8999999999999999999


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEE--EEEc-CCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLC--VQWS-PDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI  346 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~--v~~~-~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~  346 (407)
                      ++      ++++..+.+|...+.+  ..++ +++. ++++|+.||.|++||+++.+.+..+.+|..+|.+++|+|+    
T Consensus       222 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~----  290 (312)
T 4ery_A          222 SK------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT----  290 (312)
T ss_dssp             TT------TEEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS----
T ss_pred             CC------CcEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc----
Confidence            98      8888999888765332  3444 5555 5579999999999999999999999999999999999988    


Q ss_pred             cccceeeeeEeeCccceeeeEE--EeeeEEEeecc
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLT--MVKVLEIWRMI  379 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~--~d~~i~iwd~~  379 (407)
                                    +..+++++  .|++|++|+..
T Consensus       291 --------------~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          291 --------------ENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             --------------SSEEEEEECTTTCCEEEEECC
T ss_pred             --------------CCceEEEEccCCccEEEecCC
Confidence                          78888887  58999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-35  Score=269.68  Aligned_cols=264  Identities=19%  Similarity=0.273  Sum_probs=214.3

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      .+.-+...+.|.|+   +++++.|+.+++|-   ..  . .  ........|...|.+++|+| ++++|++|+.|+.|++
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd---~~--~-~--~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWD---SY--T-T--NKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEE---TT--T-C--CEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEE---CC--C-C--CcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEE
Confidence            34557778899884   88999999999992   11  1 1  12333457999999999999 8899999999999999


Q ss_pred             EeCcCCCC----cccccCcCCCCCC-------------CCCcEEEEecccccc--ccccCCCCCcccccCCCCCcccccc
Q 046899          111 WDVEAQPN----RHAVLGAADSHPD-------------LDQSVVLWSIQDHVS--ALAAEPGSAKSTASGGANSKNASKS  171 (407)
Q Consensus       111 wd~~~~~~----~~~~~~~~~~~~~-------------~d~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  171 (407)
                      ||+.+...    ...+.+|...+..             .|++|++||+.++..  .+..+...+..+........+++++
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~  203 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence            99987542    2233444433221             189999999987644  3444555555555555556789999


Q ss_pred             CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--ccCcceEEEEecC
Q 046899          172 GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--AHNADIHCVDWNP  249 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~~~  249 (407)
                      .|+.+++||+.+++.+..+.+|...|++++|+|++ ++|++|+.||+|++||+++++  ....+.  .+...|.+++|+|
T Consensus       204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~  280 (340)
T 1got_B          204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECT
T ss_pred             CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECC
Confidence            99999999999999999999999999999999999 899999999999999999876  333332  3345799999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          250 HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       250 ~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                       ++++|++|+.||.|++||++.      ++.+..+.+|..+|.+++|+|++.+| +||+.|++|++||
T Consensus       281 -~g~~l~~g~~d~~i~vwd~~~------~~~~~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd  340 (340)
T 1got_B          281 -SGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             -TSSEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             -CCCEEEEECCCCeEEEEEccc------CcEeeEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence             999999999999999999998      88899999999999999999999966 7999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=274.33  Aligned_cols=270  Identities=14%  Similarity=0.171  Sum_probs=201.9

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC--cccc-cC-cCCCCCCCCCcEEEEeccccccccccCC
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN--RHAV-LG-AADSHPDLDQSVVLWSIQDHVSALAAEP  152 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--~~~~-~~-~~~~~~~~d~~i~~w~~~~~~~~~~~~~  152 (407)
                      ..+.+|.++|++++|+| +  +||+|+.|++|++||+..+..  ...+ .+ |..                         
T Consensus         8 ~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~-------------------------   59 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKK-------------------------   59 (330)
T ss_dssp             EEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCS-------------------------
T ss_pred             eeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccC-------------------------
Confidence            34458999999999998 4  999999999999999986432  1111 11 211                         


Q ss_pred             CCCcccccCCCCCccccccCCCCCCCCCCCC-------cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899          153 GSAKSTASGGANSKNASKSGGNGDKPLESPS-------IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR  225 (407)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  225 (407)
                       .+..+...+....+++++.|+.+++|+...       .+.+..+.+|...|.+++|+|++ ++|++|+.|++|++||++
T Consensus        60 -~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           60 -AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECC
T ss_pred             -CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEecc
Confidence             111122222334578899999999998843       34566788999999999999998 899999999999999995


Q ss_pred             CCC--CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCC--CC
Q 046899          226 SGS--TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD--KS  301 (407)
Q Consensus       226 ~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~  301 (407)
                      ...  ......+.+|...|.+++|+| ++.+|++|+.|+.|++||.+...    .+++..+.+|...|.+++|+|+  +.
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~  212 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVF  212 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCee
Confidence            432  124566789999999999999 89999999999999999987621    2678899999999999999998  44


Q ss_pred             CEEEEeeCCCeEEEEeCCCCC--------ccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899          302 SVFGSSAEDGILNIWDHEKIG--------EKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV  372 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~~~~--------~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  372 (407)
                       .|++|+.|++|++||++...        ....+.. |..+|++++|++                   +..|++++.|++
T Consensus       213 -~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------------~~~l~s~~~dg~  272 (330)
T 2hes_X          213 -RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-------------------NGLIASVGADGV  272 (330)
T ss_dssp             -EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-------------------TSCEEEEETTSC
T ss_pred             -EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-------------------CCEEEEEeCCCE
Confidence             45799999999999997642        2333444 777788877764                   347999999999


Q ss_pred             EEEeeccccccCChHH--HH-HHHhhccc-ceeEeeccC
Q 046899          373 LEIWRMIDLIYRPEEE--VL-AELDKFKS-HIFGCDKSC  407 (407)
Q Consensus       373 i~iwd~~~~~~~~~~~--~~-~~~~~h~~-~v~~~~~s~  407 (407)
                      |+|||..      +++  ++ ..+.+|.. .|.+++|++
T Consensus       273 v~iw~~~------~~~~~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          273 LAVYEEV------DGEWKVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EEEEEEE------TTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred             EEEEEcC------CCceEEEeccccccccceEEEEEEec
Confidence            9999986      331  11 12357887 899999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=277.51  Aligned_cols=317  Identities=13%  Similarity=0.175  Sum_probs=245.2

Q ss_pred             eeecccCCCeeEEEEeec----ccccCccceEEEEeeccc-CcccCCcce-eeEEEe----------eCCCceEEEEEeC
Q 046899           30 LANHNLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQF-NEEARSPFV-KKFKTI----------IHPGEVNRIRELP   93 (407)
Q Consensus        30 l~~~~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~-~~~~~~~~~-~~~~~~----------~h~~~v~~l~~~~   93 (407)
                      +..+...-+..++.|.|+    +++++.++.+++|..... ......-.. ......          +|.+.|++++|+|
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  118 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH  118 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence            344444457778899874    778999999999933100 111100000 111111          2688999999999


Q ss_pred             CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecccccccccc--CCCC---
Q 046899           94 QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSALAA--EPGS---  154 (407)
Q Consensus        94 ~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~~~--~~~~---  154 (407)
                       ++++|++|+.||.|++|| .++.....+..|...+...              |+.+++|++.++......  ....   
T Consensus       119 -~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          119 -DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             -TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             -CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence             889999999999999999 4455555555554433221              899999999876432221  1111   


Q ss_pred             ------------CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899          155 ------------AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW  222 (407)
Q Consensus       155 ------------~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  222 (407)
                                  +..+.... +..+++++.++.+++||...++.+..+..|...|.+++|+|++ .+|++++.|+.|++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~  274 (425)
T 1r5m_A          197 INAENHSGDGSLGVDVEWVD-DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIW  274 (425)
T ss_dssp             ---------CCCBSCCEEEE-TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred             eeeccccCCcceeeEEEEcC-CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEE
Confidence                        11111111 2457889999999999999999999999999999999999998 799999999999999


Q ss_pred             EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899          223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS  302 (407)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  302 (407)
                      |+++++  ....+..|...|.+++|+| ++ ++++++.||.|++||+++      ++++..+..|...|.+++|+|++.+
T Consensus       275 d~~~~~--~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~s~~~~~  344 (425)
T 1r5m_A          275 HGGNGN--SQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQ------NTLLALSIVDGVPIFAGRISQDGQK  344 (425)
T ss_dssp             CSSSBS--CSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTT------TEEEEEEECTTCCEEEEEECTTSSE
T ss_pred             ECCCCc--cceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCC------CcEeEecccCCccEEEEEEcCCCCE
Confidence            999887  5677778999999999999 77 999999999999999998      8899999999999999999999995


Q ss_pred             EEEEeeCCCeEEEEeCCCCC--------------------cccccccCCC--cccCCCCcCcchhccccceeeeeEeeCc
Q 046899          303 VFGSSAEDGILNIWDHEKIG--------------------EKQDYGELKY--PIIHPAYSSDMLDIETKLLTSIGMHLIH  360 (407)
Q Consensus       303 ll~s~~~d~~i~vwd~~~~~--------------------~~~~~~~~~~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~  360 (407)
                      | ++++.||.|++||+++.+                    .+..+..+..  +|++++|+|+                  
T Consensus       345 l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------  405 (425)
T 1r5m_A          345 Y-AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA------------------  405 (425)
T ss_dssp             E-EEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT------------------
T ss_pred             E-EEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC------------------
Confidence            5 799999999999999877                    6777888866  8999999888                  


Q ss_pred             cceeeeEEEeeeEEEeecc
Q 046899          361 GRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       361 ~~~i~~~~~d~~i~iwd~~  379 (407)
                      +..|++++.|+.|+|||+.
T Consensus       406 ~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          406 GNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             SSEEEEEESSSCCEEEECC
T ss_pred             CceEEEEecCceEEEEeec
Confidence            7899999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-35  Score=268.27  Aligned_cols=284  Identities=16%  Similarity=0.141  Sum_probs=214.5

Q ss_pred             cCCCeeEEEE-----ee----cccccCccceEEEEeecccCcccCC--cceeeEEEeeCCCceEEEEEeCCCCeEEEEee
Q 046899           35 LVWPSLSCRW-----GP----QLEQATYKNRQRLYLSEQFNEEARS--PFVKKFKTIIHPGEVNRIRELPQNSKIVATHT  103 (407)
Q Consensus        35 ~~~p~~s~~~-----~~----~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~  103 (407)
                      +.-+..++.|     .|    .+++++.|+.+++|-.   ......  .......+.+|...|++++|+| ++.+|++|+
T Consensus        20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~---~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s   95 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL---YEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSS   95 (343)
T ss_dssp             CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEE---CSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEE
T ss_pred             chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEEC---CcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEc
Confidence            3445666666     33    4889999999999932   211111  1122344568999999999999 888999999


Q ss_pred             CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899          104 DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS  183 (407)
Q Consensus       104 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~  183 (407)
                      .|++|++||+.+++....+.+|...+                          ..+........+++++.|+.+++||+..
T Consensus        96 ~D~~v~lwd~~~~~~~~~~~~h~~~v--------------------------~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           96 WDKTLRLWDLRTGTTYKRFVGHQSEV--------------------------YSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             TTSEEEEEETTSSCEEEEEECCCSCE--------------------------EEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcE--------------------------EEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            99999999999887766666654331                          1111222234578888999999999873


Q ss_pred             cCceeeEe---ecccCEEEEEECCCCC---------cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899          184 IGARGKYL---GHEDTVEDVQFCPSSA---------QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       184 ~~~~~~~~---~~~~~v~~l~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      . ......   +|...|.+++|+|++.         .+|++++.|+.|++||.+ ..  ....+..|...|.+++|+| +
T Consensus       150 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~h~~~v~~~~~s~-~  224 (343)
T 2xzm_R          150 E-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ--IRYTFKAHESNVNHLSISP-N  224 (343)
T ss_dssp             C-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE--EEEEEECCSSCEEEEEECT-T
T ss_pred             C-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc--eeEEEcCccccceEEEECC-C
Confidence            3 222222   6888999999999862         589999999999999943 33  4667789999999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc--ccc-
Q 046899          252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ--DYG-  328 (407)
Q Consensus       252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~--~~~-  328 (407)
                      +++|++|+.||.|++||++..     ..+...+. +...|.+++|+|++. ++ +++.|+.|++||+.+.+...  .+. 
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~-----~~~~~~~~-~~~~v~~v~~sp~~~-~l-a~~~d~~v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNL-----TYPQREFD-AGSTINQIAFNPKLQ-WV-AVGTDQGVKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCC-----SSCSEEEE-CSSCEEEEEECSSSC-EE-EEEESSCEEEEESSSCCSCSEEECCC
T ss_pred             CCEEEEEcCCCeEEEEECCCC-----cccceeec-CCCcEEEEEECCCCC-EE-EEECCCCEEEEEeCCCCCCceEEeec
Confidence            999999999999999999542     34444553 456799999999987 44 45568899999998765443  332 


Q ss_pred             ----------cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          329 ----------ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       329 ----------~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                +|...+++++|+|+                  +..|++|+.||+|++|++.
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~------------------g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNAL------------------GKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSS------------------SCCEEEEETTSEEEEEEEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCC------------------CCeEEEecCCceEEEEEEE
Confidence                      56677888888888                  8899999999999999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-36  Score=284.04  Aligned_cols=303  Identities=10%  Similarity=0.058  Sum_probs=199.7

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-----CCeEEEEeeCCCcEEEEeCcCCCCcccc
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-----NSKIVATHTDSPDVLIWDVEAQPNRHAV  122 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~~l~tg~~dg~i~vwd~~~~~~~~~~  122 (407)
                      +++++.|+.++||-   +.... ..........+|.+.|++|+|+|.     ++.+||+|+.||+|++||+.++......
T Consensus       176 laS~s~D~tI~iWd---~~~~~-~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~  251 (524)
T 2j04_B          176 FDKEKHSSCIQIFK---MNTST-LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV  251 (524)
T ss_dssp             ------CEEEEEEE---EETTT-CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred             hccCCCCceEEEEE---ccCCC-CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence            35677889999993   22111 111112234467899999999994     2579999999999999999866432100


Q ss_pred             cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-ceeeEeecccCEEEE-
Q 046899          123 LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-ARGKYLGHEDTVEDV-  200 (407)
Q Consensus       123 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~v~~l-  200 (407)
                      .               ..+......+..+...+..+.... ...+++++.||+|++||+.++. +...+.+|...|.+| 
T Consensus       252 ~---------------~~~~~p~~~l~~h~~~v~sv~~s~-~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~  315 (524)
T 2j04_B          252 F---------------KMCEKPSLTLSLADSLITTFDFLS-PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS  315 (524)
T ss_dssp             E---------------ECCCSCSEEECCTTTCEEEEEESS-SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred             c---------------eeecCceEEEEcCCCCEEEEEecC-CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence            0               000000001111112221111111 1358899999999999998764 455688999999999 


Q ss_pred             -EECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc--ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899          201 -QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA--DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV  277 (407)
Q Consensus       201 -~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~  277 (407)
                       +|+|++..+|++|+.|++|++||+++++  ....+.+|..  .|.+++|+| ++..+++++.|+.|++||++.      
T Consensus       316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~------  386 (524)
T 2j04_B          316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRA------  386 (524)
T ss_dssp             EECCTTSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTC------
T ss_pred             EEcCCCCCeEEEEeccCCeEEEEECCCCC--cccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcc------
Confidence             5677654689999999999999999876  4445556643  588999999 888999999999999999998      


Q ss_pred             CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC-----CCcccCCCCcCcchhcccccee
Q 046899          278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL-----KYPIIHPAYSSDMLDIETKLLT  352 (407)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~~~~~~~~  352 (407)
                      +.++.++.+|...|++|+|+|+++.| ++|+.|++|++||+... .+......     ...++.++|||+          
T Consensus       387 ~~~~~~l~gH~~~V~sva~Sp~g~~l-~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~----------  454 (524)
T 2j04_B          387 AFAVHPLVSRETTITAIGVSRLHPMV-LAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIK----------  454 (524)
T ss_dssp             TTCCEEEEECSSCEEEEECCSSCCBC-EEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSS----------
T ss_pred             cccceeeecCCCceEEEEeCCCCCeE-EEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCC----------
Confidence            78888899999999999999999966 69999999999998753 33332211     124668888887          


Q ss_pred             eeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          353 SIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       353 ~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                              +..+   ..+..+++|+..     ..+.++..+.+|...|++|+|||
T Consensus       455 --------g~~~---~~~~~~~~~~~~-----~~g~~~~~l~gh~~~V~~Vafsp  493 (524)
T 2j04_B          455 --------DDKY---RIDSSYEVYPLT-----VNDVSKAKIDAHGINITCTKWNE  493 (524)
T ss_dssp             --------SCEE---EECCCCCCCC------------------CCCSCCCEEECC
T ss_pred             --------CCeE---EccCCceecccc-----cCCcceeeecCCCceEEEEECCC
Confidence                    3322   122233344331     14788999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.1e-35  Score=268.97  Aligned_cols=269  Identities=20%  Similarity=0.264  Sum_probs=210.5

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      .+.-+..++.|.|+   +++++.|+.+++|-.   .     .........+|...|.+++|+| ++++|++|+.|+.|++
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~---~-----~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA---L-----TSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEET---T-----TTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEE
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEEC---C-----CCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEE
Confidence            34557888899884   889999999999921   1     1122344457999999999999 8999999999999999


Q ss_pred             EeCcCCC-------CcccccCcCCCCCCC---------------CCcEEEEeccccccccc-------cCCCCCcccccC
Q 046899          111 WDVEAQP-------NRHAVLGAADSHPDL---------------DQSVVLWSIQDHVSALA-------AEPGSAKSTASG  161 (407)
Q Consensus       111 wd~~~~~-------~~~~~~~~~~~~~~~---------------d~~i~~w~~~~~~~~~~-------~~~~~~~~~~~~  161 (407)
                      ||+.+..       ....+.+|...+...               |+++++||+.++.....       .+...+......
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            9997532       223344554433211               89999999987754322       222223333332


Q ss_pred             C-CCCccccccCCCCCCCCCCC-CcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-
Q 046899          162 G-ANSKNASKSGGNGDKPLESP-SIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-  238 (407)
Q Consensus       162 ~-~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-  238 (407)
                      . ....+++++.|+.+++||+. ..+.+..+.+|...|++++|+|++ .+|++|+.||+|++||++++.  ....+..+ 
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~  291 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH--QLQVYNREP  291 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE--EEEEECCCC
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc--EEEEecccc
Confidence            2 34568889999999999997 557788899999999999999999 899999999999999999887  34444332 


Q ss_pred             ------CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee----cCCCCCEEEEEEcCCCCCEEEEee
Q 046899          239 ------NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF----EGHSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       239 ------~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                            ...|.+++|+| ++++|++|+.||.|++||+..      ++.+..+    .+|...|++++|+|+|.+| +||+
T Consensus       292 ~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~------~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs  363 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLL------AEMVLNLGTLQNSHEGRISCLGLSSDGSAL-CTGS  363 (380)
T ss_dssp             SSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTT------CCEEEEECCSCSSCCCCCCEEEECSSSSEE-EEEC
T ss_pred             cccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCC------CceEEEEecccCCCCCceEEEEECCCCCEE-EEee
Confidence                  23489999999 999999999999999999988      7777766    6799999999999999965 7999


Q ss_pred             CCCeEEEEeCCCCC
Q 046899          309 EDGILNIWDHEKIG  322 (407)
Q Consensus       309 ~d~~i~vwd~~~~~  322 (407)
                      .|++|++|++...+
T Consensus       364 ~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          364 WDKNLKIWAFSGHR  377 (380)
T ss_dssp             TTSCEEEEECCSSS
T ss_pred             CCCCEEEEecCCCc
Confidence            99999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.5e-35  Score=262.97  Aligned_cols=272  Identities=15%  Similarity=0.232  Sum_probs=221.4

Q ss_pred             eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccccc-----CcCCCC------CCC--------CC
Q 046899           74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL-----GAADSH------PDL--------DQ  134 (407)
Q Consensus        74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~-----~~~~~~------~~~--------d~  134 (407)
                      .......+|.+.|++++|+| ++++|++++ ||.|++||+.++.....+.     .+...+      ++.        ++
T Consensus        42 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  119 (337)
T 1gxr_A           42 ARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             cccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            44556668999999999999 889999999 9999999998765433322     222211      111        89


Q ss_pred             cEEEEecccccc----ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEE
Q 046899          135 SVVLWSIQDHVS----ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEF  210 (407)
Q Consensus       135 ~i~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  210 (407)
                      .+.+|++.+...    .+..+...+..+........+++++.++.+++||+.+++.+..+..|...|.+++|+|++ .+|
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l  198 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG-TKL  198 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEE
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC-CEE
Confidence            999999987642    233344444444444455678889999999999999999999999999999999999998 899


Q ss_pred             EEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC
Q 046899          211 CSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA  290 (407)
Q Consensus       211 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~  290 (407)
                      ++++.||.|++||+++++  ..... .+...+.+++|+| +++++++++.||.|++||++.      .+ ...+..|...
T Consensus       199 ~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~------~~-~~~~~~~~~~  267 (337)
T 1gxr_A          199 WTGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK------PD-KYQLHLHESC  267 (337)
T ss_dssp             EEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS------SC-EEEECCCSSC
T ss_pred             EEEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCC------CC-eEEEcCCccc
Confidence            999999999999999877  34443 5788999999999 899999999999999999997      43 4577889999


Q ss_pred             EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe
Q 046899          291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV  370 (407)
Q Consensus       291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d  370 (407)
                      |.+++|+|+++++ ++++.||.|++||+.+++.+.. ..+..++++++|+|+                  +..|++++.|
T Consensus       268 v~~~~~~~~~~~l-~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~------------------~~~l~~~~~d  327 (337)
T 1gxr_A          268 VLSLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVD------------------DKYIVTGSGD  327 (337)
T ss_dssp             EEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTT------------------SCEEEEEETT
T ss_pred             eeEEEECCCCCEE-EEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCC------------------CCEEEEecCC
Confidence            9999999999965 6999999999999998776633 456778888999888                  8899999999


Q ss_pred             eeEEEeecc
Q 046899          371 KVLEIWRMI  379 (407)
Q Consensus       371 ~~i~iwd~~  379 (407)
                      +.|++|++.
T Consensus       328 g~i~iw~~~  336 (337)
T 1gxr_A          328 KKATVYEVI  336 (337)
T ss_dssp             SCEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-36  Score=302.96  Aligned_cols=339  Identities=13%  Similarity=0.131  Sum_probs=237.5

Q ss_pred             eeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCC
Q 046899           29 WLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDS  105 (407)
Q Consensus        29 ~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d  105 (407)
                      ....+.+.-+..++.|.|+   +++++.|+.+++|         +...........|...|++|+|+|  +++|++++.|
T Consensus        10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw---------~~~~~~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D   78 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIY---------GQQQVEVVIKLEDRSAIKEMRFVK--GIYLVVINAK   78 (902)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEE---------CSTTCEEEEECSSCCCEEEEEEET--TTEEEEEETT
T ss_pred             cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEE---------eCCCcEEEEEcCCCCCEEEEEEcC--CCEEEEEECc
Confidence            3444566778888899884   8899999999999         222233444557899999999999  5599999999


Q ss_pred             CcEEEEeCcCCCCcccccCcC-----CCCCCC--------CCcEEEEeccccccc-------------cccCCCCCcccc
Q 046899          106 PDVLIWDVEAQPNRHAVLGAA-----DSHPDL--------DQSVVLWSIQDHVSA-------------LAAEPGSAKSTA  159 (407)
Q Consensus       106 g~i~vwd~~~~~~~~~~~~~~-----~~~~~~--------d~~i~~w~~~~~~~~-------------~~~~~~~~~~~~  159 (407)
                      ++|++||+.+++....+..+.     ...++.        |++|++||+.+....             ...+...+..+.
T Consensus        79 ~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~  158 (902)
T 2oaj_A           79 DTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ  158 (902)
T ss_dssp             CEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred             CeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence            999999999887665543211     111222        899999999876431             122333443343


Q ss_pred             cCCC-CCccccccCCCCCCCCCCCCcCceeeEeec------------------ccCEEEEEECCCCCcEEEEEeCCCcEE
Q 046899          160 SGGA-NSKNASKSGGNGDKPLESPSIGARGKYLGH------------------EDTVEDVQFCPSSAQEFCSVGDDSCLI  220 (407)
Q Consensus       160 ~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~~l~s~~~dg~i~  220 (407)
                      .... ...+++++.++.+ +||+.+++.+..+..|                  ...|++++|+|++ .+|++|+.||.|+
T Consensus       159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~  236 (902)
T 2oaj_A          159 WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLV  236 (902)
T ss_dssp             EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEE
T ss_pred             EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEE
Confidence            3332 2467889999999 9999999888877655                  5789999999998 8999999999999


Q ss_pred             EEEcCCCCCCcee--ee---c-------------ccCcceEEEEecCC---C-CCEEEEEeCC-----CcEEEEe-----
Q 046899          221 LWDARSGSTPAVK--VE---K-------------AHNADIHCVDWNPH---D-VNLILTGSAD-----NSIHMFD-----  268 (407)
Q Consensus       221 iwd~~~~~~~~~~--~~---~-------------~~~~~v~~l~~~~~---~-~~~l~tg~~d-----g~i~vwd-----  268 (407)
                      +||+++++  .+.  .+   .             .|...|++++|++.   + +.++++|+.|     ..+.+|+     
T Consensus       237 lWd~~~g~--~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~  314 (902)
T 2oaj_A          237 FWDANSGH--MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP  314 (902)
T ss_dssp             EEETTTCC--EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred             EEECCCCc--EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence            99999876  332  12   1             13457889999531   2 2456666544     2455555     


Q ss_pred             ------------------------------------------------------------------CCCCCCCCCCCcee
Q 046899          269 ------------------------------------------------------------------RRKLTSDGVGSPIH  282 (407)
Q Consensus       269 ------------------------------------------------------------------~~~~~~~~~~~~~~  282 (407)
                                                                                        +.+      +.+..
T Consensus       315 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~------g~~~~  388 (902)
T 2oaj_A          315 RYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS------GIFTD  388 (902)
T ss_dssp             CGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT------CCEEC
T ss_pred             CccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC------CCccc
Confidence                                                                              321      11110


Q ss_pred             -----------------------------------------eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          283 -----------------------------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       283 -----------------------------------------~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                                                               .+.+|...+.+++|+|+++ +|+||+.|++|++||+..+
T Consensus       389 ~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g  467 (902)
T 2oaj_A          389 KASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHG  467 (902)
T ss_dssp             CGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCC
T ss_pred             ccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEEEECCCc
Confidence                                                     1223333444455678888 4589999999999999886


Q ss_pred             Cccc--cc---------ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC-----
Q 046899          322 GEKQ--DY---------GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP-----  385 (407)
Q Consensus       322 ~~~~--~~---------~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~-----  385 (407)
                      ....  .+         .+|...|++++||||                  +..|++|+.|++|+|||+.......     
T Consensus       468 ~~~~~~~~~~~l~~~~~~~h~~~V~svafspd------------------g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~  529 (902)
T 2oaj_A          468 DIQDNASFEVNLSRTLNKAKELAVDKISFAAE------------------TLELAVSIETGDVVLFKYEVNQFYSVENRP  529 (902)
T ss_dssp             TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETT------------------TTEEEEEETTSCEEEEEEEECCC-------
T ss_pred             cccCCceEEeechhhcCCCCCCceeEEEecCC------------------CCeEEEEecCcEEEEEEecCccccCccccC
Confidence            4221  11         167889999999999                  8999999999999999997431100     


Q ss_pred             --h--------------------------------HHHHHHHhhcccceeEeeccC
Q 046899          386 --E--------------------------------EEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       386 --~--------------------------------~~~~~~~~~h~~~v~~~~~s~  407 (407)
                        .                                .+++..+.+|.+.|++|+||+
T Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp  585 (902)
T 2oaj_A          530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN  585 (902)
T ss_dssp             --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB
T ss_pred             CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC
Confidence              0                                023556788999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-36  Score=280.21  Aligned_cols=295  Identities=16%  Similarity=0.204  Sum_probs=240.6

Q ss_pred             eeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeC----cCCCC------cccccC----------cCCCC----
Q 046899           75 KKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDV----EAQPN------RHAVLG----------AADSH----  129 (407)
Q Consensus        75 ~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~----~~~~~------~~~~~~----------~~~~~----  129 (407)
                      .......|.+.|++++|+| +++ +||+|+.||.|++||+    .++..      ...+..          |...+    
T Consensus        37 ~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           37 KILKEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             EECEEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred             hheeeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence            3445557889999999999 777 9999999999999999    76662      222211          12111    


Q ss_pred             --CCC--------CCcEEEEeccccc-cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC--
Q 046899          130 --PDL--------DQSVVLWSIQDHV-SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT--  196 (407)
Q Consensus       130 --~~~--------d~~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--  196 (407)
                        ++.        |+.+.+|+..... ..+..+...+..+........+++++.++.+++||+.+++.+..+..+...  
T Consensus       116 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          116 WSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence              111        8999999954432 234445555555555555667889999999999999999998888877776  


Q ss_pred             -------------EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc
Q 046899          197 -------------VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS  263 (407)
Q Consensus       197 -------------v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~  263 (407)
                                   +.+++|+|++  .+++++.||.|++||+++++  ....+..|...|.+++|+| ++++|++++.||.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~  270 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFND-TNKLLLSASDDGT  270 (425)
T ss_dssp             ----------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS--CSEEECCCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred             ceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc--eeeeeccCCCceEEEEECC-CCCEEEEEcCCCE
Confidence                         9999999976  68899999999999999887  5667778999999999999 8899999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcc
Q 046899          264 IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDM  343 (407)
Q Consensus       264 i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~  343 (407)
                      |++||++.      ++++..+..|...|.+++|+|++  ++++++.|+.|++||+++++.+..+..+..++++++|+|+ 
T Consensus       271 i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~-  341 (425)
T 1r5m_A          271 LRIWHGGN------GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD-  341 (425)
T ss_dssp             EEEECSSS------BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT-
T ss_pred             EEEEECCC------CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC-
Confidence            99999998      78899999999999999999999  4579999999999999999888888889999999999988 


Q ss_pred             hhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH--------------------HHHHHhhccc--cee
Q 046899          344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE--------------------VLAELDKFKS--HIF  401 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~~~~h~~--~v~  401 (407)
                                       +..|++++.|+.|+|||+.      .++                    ++..+.+|..  .|+
T Consensus       342 -----------------~~~l~~~~~dg~i~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  398 (425)
T 1r5m_A          342 -----------------GQKYAVAFMDGQVNVYDLK------KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIF  398 (425)
T ss_dssp             -----------------SSEEEEEETTSCEEEEECH------HHHC--------------CEECCEEEEECCTTCCCCEE
T ss_pred             -----------------CCEEEEEECCCeEEEEECC------CCccceeeeecccccccCcccchhhhhhcCcccCCceE
Confidence                             8899999999999999998      666                    6778889977  999


Q ss_pred             EeeccC
Q 046899          402 GCDKSC  407 (407)
Q Consensus       402 ~~~~s~  407 (407)
                      +++|++
T Consensus       399 ~~~~s~  404 (425)
T 1r5m_A          399 DLSWNC  404 (425)
T ss_dssp             EEEECT
T ss_pred             EEEccC
Confidence            999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-34  Score=267.66  Aligned_cols=289  Identities=20%  Similarity=0.316  Sum_probs=227.5

Q ss_pred             CCCeeEEEEeec-ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           36 VWPSLSCRWGPQ-LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        36 ~~p~~s~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      +.....++|.+. +++++.++.+++|-   ..    ...........|.+.|++++|+| ++++|++|+.||.|++||+.
T Consensus        93 ~~~~~~~~~s~~~l~~~~~d~~v~lw~---~~----~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           93 DYYLNLLDWSNLNVVAVALERNVYVWN---AD----SGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             CTTCBCEEECTTSEEEEEETTEEEEEE---TT----TCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred             CceEEEEeecCCCEEEEECCCeEEEee---CC----CCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECc
Confidence            344556788764 77888899999992   21    11222333345899999999999 88999999999999999999


Q ss_pred             CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC-CcCceeeEeec
Q 046899          115 AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP-SIGARGKYLGH  193 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~  193 (407)
                      +++....+.+|...+       .-....                     ...+++++.++.+++||+. ....+..+.+|
T Consensus       165 ~~~~~~~~~~~~~~v-------~~~~~~---------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          165 SQTKLRTMAGHQARV-------GCLSWN---------------------RHVLSSGSRSGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             TCCEEEEECCCSSCE-------EEEEEE---------------------TTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             CCeEEEEecCCCCce-------EEEEEC---------------------CCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence            887776666554331       111111                     1357788899999999998 56667888899


Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe--CCCcEEEEeCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS--ADNSIHMFDRRK  271 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~--~dg~i~vwd~~~  271 (407)
                      ...|.+++|+|++ .+|++|+.|+.|++||++++.  ....+..|...|.+++|+|.+..++++|+  .|+.|++||+++
T Consensus       217 ~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~  293 (401)
T 4aez_A          217 SSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT  293 (401)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSS--EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred             CCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCC--ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence            9999999999988 899999999999999999877  67777889999999999996667888866  799999999998


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE-eeCCCeEEEEeCCCCCccc--ccccCCCcccCCCCcCcchhccc
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS-SAEDGILNIWDHEKIGEKQ--DYGELKYPIIHPAYSSDMLDIET  348 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~~~~  348 (407)
                            ++++..+. +...|.+++|+|++++++++ |+.||.|++||+.+.+...  .+.+|..+|++++|+||      
T Consensus       294 ------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d------  360 (401)
T 4aez_A          294 ------GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD------  360 (401)
T ss_dssp             ------CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT------
T ss_pred             ------CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC------
Confidence                  88888886 66789999999999976533 4489999999999854443  46688999999999998      


Q ss_pred             cceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          349 KLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                                  +..|++++.|+.|+|||+.      +++++....
T Consensus       361 ------------g~~l~s~~~dg~i~iw~~~------~~~~~~~~~  388 (401)
T 4aez_A          361 ------------GRILSTAASDENLKFWRVY------DGDHVKRPI  388 (401)
T ss_dssp             ------------SSEEEEECTTSEEEEEECC------C--------
T ss_pred             ------------CCEEEEEeCCCcEEEEECC------CCccccccc
Confidence                        8899999999999999998      666665543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.2e-36  Score=268.22  Aligned_cols=251  Identities=19%  Similarity=0.265  Sum_probs=195.3

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      ..+|.+.|++++|+| ++++||||+.|++|+|||+.++.  ....+.+|...         ++.                
T Consensus         9 ~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~---------V~~----------------   62 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGP---------VWQ----------------   62 (316)
T ss_dssp             -----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSC---------EEE----------------
T ss_pred             cccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCcc---------EEE----------------
Confidence            347999999999999 88999999999999999998653  23334444332         111                


Q ss_pred             ccccCC--CCCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCC-
Q 046899          157 STASGG--ANSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGST-  229 (407)
Q Consensus       157 ~~~~~~--~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-  229 (407)
                       +....  ....+++++.|+.+++||..+++  ....+.+|...|.+++|+|+  + .+|++|+.|+.|++||++.... 
T Consensus        63 -v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~  140 (316)
T 3bg1_A           63 -VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW  140 (316)
T ss_dssp             -EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE
T ss_pred             -EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc
Confidence             11110  12458889999999999998764  55667789999999999998  5 7899999999999999987641 


Q ss_pred             CceeeecccCcceEEEEecCCC-----------------CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE
Q 046899          230 PAVKVEKAHNADIHCVDWNPHD-----------------VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL  292 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~-----------------~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~  292 (407)
                      .....+.+|...|.+++|+| +                 +.+|++|+.|+.|++||++....   .+++.++.+|...|+
T Consensus       141 ~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~l~~h~~~V~  216 (316)
T 3bg1_A          141 EVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---WKEEQKLEAHSDWVR  216 (316)
T ss_dssp             EECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC---EEEEECCBCCSSCEE
T ss_pred             ceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc---cceeeecccCCCceE
Confidence            12345568999999999999 4                 46899999999999999975110   146778899999999


Q ss_pred             EEEEcCCC---CCEEEEeeCCCeEEEEeCCCCC----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceee
Q 046899          293 CVQWSPDK---SSVFGSSAEDGILNIWDHEKIG----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV  365 (407)
Q Consensus       293 ~v~~~~~~---~~ll~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~  365 (407)
                      +++|+|++   ..+||+++.|++|++||+....    ....+..+..+|++++|+|+                  +..|+
T Consensus       217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~------------------g~~la  278 (316)
T 3bg1_A          217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT------------------ANILA  278 (316)
T ss_dssp             EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT------------------TCCEE
T ss_pred             EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC------------------CCEEE
Confidence            99999986   2356899999999999998632    12334567888999999998                  88999


Q ss_pred             eEEEeeeEEEeecc
Q 046899          366 CLTMVKVLEIWRMI  379 (407)
Q Consensus       366 ~~~~d~~i~iwd~~  379 (407)
                      +++.|++|+||+..
T Consensus       279 s~~~D~~v~lw~~~  292 (316)
T 3bg1_A          279 VSGGDNKVTLWKES  292 (316)
T ss_dssp             EEESSSCEEEEEEC
T ss_pred             EEcCCCeEEEEEEC
Confidence            99999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.7e-35  Score=271.06  Aligned_cols=305  Identities=15%  Similarity=0.189  Sum_probs=227.8

Q ss_pred             CceEEEe--eeecccCCCeeEEEEeec-------ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC
Q 046899           23 VPVLYDW--LANHNLVWPSLSCRWGPQ-------LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP   93 (407)
Q Consensus        23 ~~~~y~~--l~~~~~~~p~~s~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~   93 (407)
                      .|+-|..  .....+.-|...+.|.|.       ++.++.++.+++|.   .................|.+.|++++|+|
T Consensus         3 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   79 (366)
T 3k26_A            3 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYE---CHSQGEIRLLQSYVDADADENFYTCAWTY   79 (366)
T ss_dssp             --CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEE---ECGGGCEEEEEEEECSCTTCCEEEEEEEE
T ss_pred             ceeEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEE---cCCCcEEEeeeeccccCCCCcEEEEEecc
Confidence            4555554  233345668888999873       56666677899993   22222211222222223789999999999


Q ss_pred             CC---CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC-CCCcccc
Q 046899           94 QN---SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG-ANSKNAS  169 (407)
Q Consensus        94 ~~---~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  169 (407)
                      ..   +++|++|+.||.|++||+.+++....+.+|...+       .                   .+.... ....+++
T Consensus        80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i-------~-------------------~~~~~~~~~~~l~s  133 (366)
T 3k26_A           80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI-------N-------------------ELKFHPRDPNLLLS  133 (366)
T ss_dssp             CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCE-------E-------------------EEEECSSCTTEEEE
T ss_pred             CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcE-------E-------------------EEEECCCCCCEEEE
Confidence            32   6799999999999999999887666655543321       1                   111111 2345788


Q ss_pred             ccCCCCCCCCCCCCcCceeeE---eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC----------------
Q 046899          170 KSGGNGDKPLESPSIGARGKY---LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP----------------  230 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------------  230 (407)
                      ++.++.+++||+.+++.+..+   .+|...|.+++|+|++ .+|++++.||.|++||+++++..                
T Consensus       134 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  212 (366)
T 3k26_A          134 VSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR  212 (366)
T ss_dssp             EETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred             EeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence            889999999999999888888   6799999999999998 89999999999999999876410                


Q ss_pred             ----------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC--------CCCCCceeeecCCCCCEE
Q 046899          231 ----------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS--------DGVGSPIHKFEGHSAAVL  292 (407)
Q Consensus       231 ----------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~h~~~v~  292 (407)
                                .......|...|.+++|+   ++++++++.||.|++||++....        ......+..+..|...|+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  289 (366)
T 3k26_A          213 PFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW  289 (366)
T ss_dssp             CCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS
T ss_pred             cccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEE
Confidence                      111223389999999998   46999999999999999987321        000133778888999999


Q ss_pred             EEEEcCC--CCCEEEEeeCCCeEEEEeCCCCCccc----ccccC--CCcccCCCCcCcchhccccceeeeeEeeCcccee
Q 046899          293 CVQWSPD--KSSVFGSSAEDGILNIWDHEKIGEKQ----DYGEL--KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL  364 (407)
Q Consensus       293 ~v~~~~~--~~~ll~s~~~d~~i~vwd~~~~~~~~----~~~~~--~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i  364 (407)
                      +++|+|+  +.+ |++|+.||.|++||+.+++...    .+..|  ..+|++++|+|+                  +..|
T Consensus       290 ~~~~s~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------~~~l  350 (366)
T 3k26_A          290 YMRFSMDFWQKM-LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD------------------SSIL  350 (366)
T ss_dssp             CCCCEECTTSSE-EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT------------------SSEE
T ss_pred             EEEEcCCCCCcE-EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC------------------CCeE
Confidence            9999999  885 5799999999999999876544    56666  688999999998                  8899


Q ss_pred             eeEEEeeeEEEeecc
Q 046899          365 VCLTMVKVLEIWRMI  379 (407)
Q Consensus       365 ~~~~~d~~i~iwd~~  379 (407)
                      ++++.|+.|+|||+.
T Consensus       351 ~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          351 IAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEeCCCEEEEEEec
Confidence            999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-36  Score=278.81  Aligned_cols=274  Identities=15%  Similarity=0.296  Sum_probs=220.4

Q ss_pred             CCCceEEEEEeCCCCeEEEEe----------eCCCcEEEEeCcCCCC---cccccCcCCCC------CCC--------CC
Q 046899           82 HPGEVNRIRELPQNSKIVATH----------TDSPDVLIWDVEAQPN---RHAVLGAADSH------PDL--------DQ  134 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg----------~~dg~i~vwd~~~~~~---~~~~~~~~~~~------~~~--------d~  134 (407)
                      +...|.+++|+|+...+|++|          +.|+.|++||+.++..   ...+ .+...+      ++.        |+
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            455789999999434599999          8999999999987642   2222 222211      111        89


Q ss_pred             cEEEEeccc------cccccccCCCCCcccccCCC-CCccccccCCCCCCCCCCCCcC------ceee---EeecccCEE
Q 046899          135 SVVLWSIQD------HVSALAAEPGSAKSTASGGA-NSKNASKSGGNGDKPLESPSIG------ARGK---YLGHEDTVE  198 (407)
Q Consensus       135 ~i~~w~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~~------~~~~---~~~~~~~v~  198 (407)
                      .+++|++..      ....+..+...+..+..... ...+++++.++.+++||+.+.+      ....   +..|...|.
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI  169 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence            999999987      12344455555555555554 5678899999999999998876      3322   357899999


Q ss_pred             EEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc------CcceEEEEecCCCCCEEEEEeCCC---cEEEEeC
Q 046899          199 DVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH------NADIHCVDWNPHDVNLILTGSADN---SIHMFDR  269 (407)
Q Consensus       199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~tg~~dg---~i~vwd~  269 (407)
                      +++|+|++..+|++++.|+.|++||+++++  ....+..+      ...|.+++|+|.+..++++++.|+   .|++||+
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence            999999955899999999999999999877  45555555      788999999994457999999999   9999999


Q ss_pred             CCCCCCCCCCceeeec-CCCCCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcc
Q 046899          270 RKLTSDGVGSPIHKFE-GHSAAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIE  347 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~  347 (407)
                      +..     ..++..+. +|...|++++|+| ++.+ |++++.|+.|++||+++++.+..+..|..+|++++|+|+     
T Consensus       248 ~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~~-l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-----  316 (416)
T 2pm9_A          248 RNA-----NTPLQTLNQGHQKGILSLDWCHQDEHL-LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPE-----  316 (416)
T ss_dssp             TST-----TSCSBCCCSCCSSCEEEEEECSSCSSC-EEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTT-----
T ss_pred             CCC-----CCCcEEeecCccCceeEEEeCCCCCCe-EEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCC-----
Confidence            982     26777888 8999999999999 7775 479999999999999999999999999999999999998     


Q ss_pred             ccceeeeeEeeCcc-ceeeeEEEeeeEEEeeccccc
Q 046899          348 TKLLTSIGMHLIHG-RLLVCLTMVKVLEIWRMIDLI  382 (407)
Q Consensus       348 ~~~~~~~~~~~~~~-~~i~~~~~d~~i~iwd~~~~~  382 (407)
                                   + ..+++++.|++|+|||+....
T Consensus       317 -------------~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          317 -------------APDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             -------------CTTEEEECCSSSEEEEEESCCCC
T ss_pred             -------------CCCEEEEEecCCcEEEEEccCCC
Confidence                         5 789999999999999997543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.3e-35  Score=269.85  Aligned_cols=301  Identities=12%  Similarity=0.112  Sum_probs=232.3

Q ss_pred             ccCCCeeEEEEee-cccccCccceEEEEeecccCccc-CCcceeeEEEeeCCCceEEEEEeCCC----C---eEEEEeeC
Q 046899           34 NLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEA-RSPFVKKFKTIIHPGEVNRIRELPQN----S---KIVATHTD  104 (407)
Q Consensus        34 ~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~----~---~~l~tg~~  104 (407)
                      .+.-+..++.|.| .+++++.|+.+++|-.   .... ..+........+|...|++++|+| +    +   ++|++|+.
T Consensus        14 ~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~   89 (397)
T 1sq9_A           14 AHDADIFSVSACNSFTVSCSGDGYLKVWDN---KLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSF   89 (397)
T ss_dssp             CSSSCEEEEEECSSEEEEEETTSEEEEEES---BCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEET
T ss_pred             hhhcCeEEEEecCCeEEEEcCCCEEEEEEC---CCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcC
Confidence            3455778888887 4778999999999932   2221 112223455558999999999999 6    8   99999999


Q ss_pred             CCcEEEEeCcCCCC-----cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC----CCCCc-cccccCCC
Q 046899          105 SPDVLIWDVEAQPN-----RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG----GANSK-NASKSGGN  174 (407)
Q Consensus       105 dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~  174 (407)
                      ||.|++||+.++..     ...+..+.....                     ...+..+...    ..... +++++.++
T Consensus        90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~~~~~~l~~~~~dg  148 (397)
T 1sq9_A           90 SGDLLFYRITREDETKKVIFEKLDLLDSDMK---------------------KHSFWALKWGASNDRLLSHRLVATDVKG  148 (397)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGG---------------------GSCEEEEEEECCC----CEEEEEEETTS
T ss_pred             CCCEEEEEccCCcccccccceeecccccccC---------------------CCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence            99999999998765     444433321000                     0011111111    22345 77888999


Q ss_pred             CCCCCCCCC------cCcee-----eEee-------cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899          175 GDKPLESPS------IGARG-----KYLG-------HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       175 ~i~i~d~~~------~~~~~-----~~~~-------~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                      .+++||+..      ++.+.     .+.+       |...|.+++|+|++  +|++++.||.|++||+++++  ....+.
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~  224 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFE  224 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEE
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEe
Confidence            999999988      77776     7744       88999999999988  89999999999999999877  667777


Q ss_pred             c---c---CcceEEEEecCCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCCceeeecC-------------CCCCEEEE
Q 046899          237 A---H---NADIHCVDWNPHDVNLILTGSAD---NSIHMFDRRKLTSDGVGSPIHKFEG-------------HSAAVLCV  294 (407)
Q Consensus       237 ~---~---~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~-------------h~~~v~~v  294 (407)
                      .   |   ...|.+++|+| ++++|++++.|   |.|++||+++      ++++..+..             |...|.++
T Consensus       225 ~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  297 (397)
T 1sq9_A          225 SQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSL  297 (397)
T ss_dssp             CCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTT------CCEEEEECBC--------CCBSBSSCEEEE
T ss_pred             ccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCC------CcccceeccCcccccccccccccCCcEEEE
Confidence            7   8   99999999999 89999999999   9999999998      889999988             99999999


Q ss_pred             EEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc------cC---------------CCcccCCCCcCcchhccccceee
Q 046899          295 QWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG------EL---------------KYPIIHPAYSSDMLDIETKLLTS  353 (407)
Q Consensus       295 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~d~~~~~~~~~~~  353 (407)
                      +|+|++++| ++++.|+.|++||+++++.+..+.      .|               ..+|++++|+|+..-+..+    
T Consensus       298 ~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~----  372 (397)
T 1sq9_A          298 SFNDSGETL-CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG----  372 (397)
T ss_dssp             EECSSSSEE-EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT----
T ss_pred             EECCCCCEE-EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc----
Confidence            999999965 799999999999999998888888      77               8888888888871000000    


Q ss_pred             eeEeeCccceeeeEEEeeeEEEeecc
Q 046899          354 IGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       354 ~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                          ......|++++.|+.|+|||+.
T Consensus       373 ----~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          373 ----ADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             ----CTTSCEEEEEETTTEEEEEEEE
T ss_pred             ----ccccceEEEecCCCcEEEEEcC
Confidence                0001689999999999999997

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=264.01  Aligned_cols=301  Identities=17%  Similarity=0.251  Sum_probs=228.7

Q ss_pred             CceEEEeeeecccCCCeeEEEEeec----ccccCc---cceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCC
Q 046899           23 VPVLYDWLANHNLVWPSLSCRWGPQ----LEQATY---KNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQN   95 (407)
Q Consensus        23 ~~~~y~~l~~~~~~~p~~s~~~~~~----~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~   95 (407)
                      .|-+...+. ..+.-+..++.|.|+    +++++.   |+.+++|-.   .    ..........+|.+.|++++|+|..
T Consensus         6 ~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~---~----~~~~~~~~~~~~~~~v~~~~~~~~~   77 (357)
T 3i2n_A            6 KPQIIAHIQ-KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI---Q----HGDLKLLREIEKAKPIKCGTFGATS   77 (357)
T ss_dssp             CCCEEEEEE-EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEE---C----SSSEEEEEEEEESSCEEEEECTTCC
T ss_pred             hhHHhhhhc-cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeC---C----CCcccceeeecccCcEEEEEEcCCC
Confidence            344433333 235668888999883    456665   889999922   1    2223445555899999999999943


Q ss_pred             --CeEEEEeeCCCcEEEEeCcCCC-CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccC
Q 046899           96 --SKIVATHTDSPDVLIWDVEAQP-NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSG  172 (407)
Q Consensus        96 --~~~l~tg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (407)
                        +++|++|+.||.|++||+.++. ....+.+|...+       .--....          .   .........+++++.
T Consensus        78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-------~~~~~~~----------~---~~~s~~~~~l~~~~~  137 (357)
T 3i2n_A           78 LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEII-------NAIDGIG----------G---LGIGEGAPEIVTGSR  137 (357)
T ss_dssp             TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCE-------EEEEEES----------G---GGCC-CCCEEEEEET
T ss_pred             CCCceEEEecCCCeEEEEeCCCCCccEEEEEecccce-------EEEeecc----------c---cccCCCccEEEEEeC
Confidence              7999999999999999999876 555555554331       1110000          0   011222345788999


Q ss_pred             CCCCCCCCCCCcC-ceeeEeeccc----CEEEEE----ECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899          173 GNGDKPLESPSIG-ARGKYLGHED----TVEDVQ----FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH  243 (407)
Q Consensus       173 ~~~i~i~d~~~~~-~~~~~~~~~~----~v~~l~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  243 (407)
                      ++.+++||+..++ .+..+..|.+    .+.+++    |+|++ .+|++++.||.|++||+++++  . .....|...|.
T Consensus       138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--~-~~~~~~~~~v~  213 (357)
T 3i2n_A          138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMA--L-RWETNIKNGVC  213 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTE--E-EEEEECSSCEE
T ss_pred             CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCc--e-eeecCCCCceE
Confidence            9999999999887 6777766554    899998    77888 899999999999999999877  3 44467889999


Q ss_pred             EEEecCC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-----CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          244 CVDWNPH--DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       244 ~l~~~~~--~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      +++|+|.  ++.+|++|+.||.|++||++.      ++++..+.     +|...|++++|+|+++.+|++++.||.|++|
T Consensus       214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          214 SLEFDRKDISMNKLVATSLEGKFHVFDMRT------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             EEEESCSSSSCCEEEEEESTTEEEEEEEEE------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             EEEcCCCCCCCCEEEEECCCCeEEEEeCcC------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence            9999985  578999999999999999988      55555544     8999999999999998666899999999999


Q ss_pred             eCCCCC-------------------cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEe
Q 046899          317 DHEKIG-------------------EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIW  376 (407)
Q Consensus       317 d~~~~~-------------------~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iw  376 (407)
                      |++...                   .+..+..|..+|++++|+|+                  +..++ +++.|+.|+||
T Consensus       288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------~~~l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD------------------KRGLCVCSSFDQTVRVL  349 (357)
T ss_dssp             EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS------------------STTEEEEEETTSEEEEE
T ss_pred             ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC------------------CCeEEEEecCCCcEEEE
Confidence            998643                   34556678888999999888                  77787 89999999999


Q ss_pred             ecc
Q 046899          377 RMI  379 (407)
Q Consensus       377 d~~  379 (407)
                      |+.
T Consensus       350 ~~~  352 (357)
T 3i2n_A          350 IVT  352 (357)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.6e-34  Score=261.56  Aligned_cols=264  Identities=18%  Similarity=0.222  Sum_probs=209.9

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      .+.-+..++.|.|+   +++++.|+.+++|-..        ..........|...|.+++|+| ++.+|++|+.|+.+++
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~--------~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF--------TTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSV  132 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--------TCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC--------CCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEE
Confidence            35557888899874   8899999999999211        1122333446889999999999 8999999999999999


Q ss_pred             EeCcCCCC------cccccCcCCCCC------CC--------CCcEEEEecccccc--ccccCCCCCcccccCC--CCCc
Q 046899          111 WDVEAQPN------RHAVLGAADSHP------DL--------DQSVVLWSIQDHVS--ALAAEPGSAKSTASGG--ANSK  166 (407)
Q Consensus       111 wd~~~~~~------~~~~~~~~~~~~------~~--------d~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~--~~~~  166 (407)
                      |++.....      ...+..|...+.      +.        |++|++||++++..  .+..+...+.......  ....
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            99875421      122223332221      11        89999999987754  3444444443333322  2357


Q ss_pred             cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--ccCcceEE
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--AHNADIHC  244 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~  244 (407)
                      +++++.|+.+++||+.+++++..+.+|...|++++|+|++ .+|++|+.|++|++||++...  ....+.  .+...+.+
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~  289 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADR--EVAIYSKESIIFGASS  289 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeE
Confidence            8899999999999999999999999999999999999999 899999999999999999876  333333  33457899


Q ss_pred             EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      ++|+| ++.+|++|+.|+.|++||+++      ++.+..+.+|...|++++|+|++.+| ++|+.|++|++|+
T Consensus       290 ~~~s~-~g~~l~~g~~d~~i~vwd~~~------~~~~~~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~  354 (354)
T 2pbi_B          290 VDFSL-SGRLLFAGYNDYTINVWDVLK------GSRVSILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA  354 (354)
T ss_dssp             EEECT-TSSEEEEEETTSCEEEEETTT------CSEEEEECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred             EEEeC-CCCEEEEEECCCcEEEEECCC------CceEEEEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence            99999 999999999999999999988      88899999999999999999999976 7999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=265.19  Aligned_cols=279  Identities=13%  Similarity=0.117  Sum_probs=232.2

Q ss_pred             CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcE
Q 046899           71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSV  136 (407)
Q Consensus        71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i  136 (407)
                      ........+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.+|...+.+.              |+.|
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i   98 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI   98 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             ccccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            44455667779999999999999 88999999999999999999988877777666543322              8999


Q ss_pred             EEEecccccccccc-CCCCCcccccCCCCCccccccCC-----CCCCCCCCCCcC-----------ceeeEeeccc--CE
Q 046899          137 VLWSIQDHVSALAA-EPGSAKSTASGGANSKNASKSGG-----NGDKPLESPSIG-----------ARGKYLGHED--TV  197 (407)
Q Consensus       137 ~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~-----------~~~~~~~~~~--~v  197 (407)
                      ++||+.+....... ....+..+........+++++.+     +.+.+||.....           .+..+..|..  .+
T Consensus        99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B           99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            99999876443222 33333444444455567777777     999999987654           3344455555  99


Q ss_pred             EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 046899          198 EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGV  277 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~  277 (407)
                      .+++|+|++ .+|++++.||.|++||+++... ....+..|...|.+++|+| ++++|++++.||.|++||+++      
T Consensus       179 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~------  249 (369)
T 3zwl_B          179 TVAGWSTKG-KYIIAGHKDGKISKYDVSNNYE-YVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST------  249 (369)
T ss_dssp             EEEEECGGG-CEEEEEETTSEEEEEETTTTTE-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------
T ss_pred             eEEEEcCCC-CEEEEEcCCCEEEEEECCCCcE-eEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCC------
Confidence            999999998 7999999999999999998432 5677788999999999999 899999999999999999998      


Q ss_pred             CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--------------eEEEEeCCCCCcccccccCCCcccCCCCcCcc
Q 046899          278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDM  343 (407)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--------------~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~  343 (407)
                      ++.+..+. +...+.+++|+|+++++ ++++.++              .+++||+.+.+.+..+.+|..+|++++|+|+ 
T Consensus       250 ~~~~~~~~-~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-  326 (369)
T 3zwl_B          250 LQVLKKYE-TDCPLNTAVITPLKEFI-ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQ-  326 (369)
T ss_dssp             CCEEEEEE-CSSCEEEEEECSSSSEE-EEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTT-
T ss_pred             Cceeeeec-CCCCceeEEecCCCceE-EEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCC-
Confidence            78888887 78899999999999976 5777777              8999999999999999999999999999998 


Q ss_pred             hhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                                       +..|++++.|+.|+||++.
T Consensus       327 -----------------~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          327 -----------------GTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             -----------------SSEEEEEETTSEEEEEEEC
T ss_pred             -----------------CCEEEEEcCCCeEEEEECc
Confidence                             8899999999999999998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4e-34  Score=267.57  Aligned_cols=279  Identities=17%  Similarity=0.324  Sum_probs=223.8

Q ss_pred             EEEEeec-ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc
Q 046899           41 SCRWGPQ-LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR  119 (407)
Q Consensus        41 s~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~  119 (407)
                      .++|.+. +...+.|++++||-.     . ...........+|.+.|++|+|+| ++++||+|+.||+|+|||+.+++.+
T Consensus       110 ~l~wS~~n~lAvgld~tV~lWd~-----~-tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          110 LVDWSSGNVLAVALDNSVYLWSA-----S-SGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CEEECTTSEEEEEETTEEEEEET-----T-TCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             eEEECCCCEEEEEeCCEEEEEEC-----C-CCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEE
Confidence            3678663 333445889999921     1 122233344456889999999999 8999999999999999999998877


Q ss_pred             ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCc-CceeeEeecccCEE
Q 046899          120 HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSI-GARGKYLGHEDTVE  198 (407)
Q Consensus       120 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~  198 (407)
                      ..+.+|...+       .....+                     ...+++++.++.+++||.... ..+..+.+|...+.
T Consensus       183 ~~~~~h~~~v-------~~~s~~---------------------~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~  234 (420)
T 4gga_A          183 RNMTSHSARV-------GSLSWN---------------------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC  234 (420)
T ss_dssp             EEECCCSSCE-------EEEEEE---------------------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             EEEeCCCCce-------EEEeeC---------------------CCEEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence            7776664431       111111                     124677888999999987764 45577889999999


Q ss_pred             EEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCCCCEEEEE--eCCCcEEEEeCCCCCC
Q 046899          199 DVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTG--SADNSIHMFDRRKLTS  274 (407)
Q Consensus       199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~tg--~~dg~i~vwd~~~~~~  274 (407)
                      .+.|+|++ .++++++.|+.|++||..+++.  ........|...|.+++|+|.+..+++++  +.|+.|++||+++   
T Consensus       235 ~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---  310 (420)
T 4gga_A          235 GLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---  310 (420)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---
T ss_pred             eeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---
Confidence            99999999 8999999999999999987652  13456678999999999999777787764  5799999999999   


Q ss_pred             CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe-eCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceee
Q 046899          275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS-AEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS  353 (407)
Q Consensus       275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  353 (407)
                         ++++..+..| ..+.++.|+|++..+++++ +.|+.|+|||+.+++.+..+.+|..+|++++||||           
T Consensus       311 ---~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd-----------  375 (420)
T 4gga_A          311 ---GACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD-----------  375 (420)
T ss_dssp             ---TEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------
T ss_pred             ---cccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC-----------
Confidence               8888888755 5789999999999876433 37999999999999999999999999999999999           


Q ss_pred             eeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          354 IGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       354 ~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                             +..|++++.|++|+|||+.+
T Consensus       376 -------g~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          376 -------GATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             -------SSCEEEEETTTEEEEECCSC
T ss_pred             -------CCEEEEEecCCeEEEEECCC
Confidence                   88999999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.5e-34  Score=265.09  Aligned_cols=290  Identities=10%  Similarity=0.106  Sum_probs=206.1

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCC-------cEEEEeCcCCCCcc----------cccCcCCCCCCC------------
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSP-------DVLIWDVEAQPNRH----------AVLGAADSHPDL------------  132 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg-------~i~vwd~~~~~~~~----------~~~~~~~~~~~~------------  132 (407)
                      -.-+|.+++|+| ++++|++|+.|.       .|++|++.......          .+.++...+...            
T Consensus        13 ~g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~   91 (365)
T 4h5i_A           13 VGYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCN   91 (365)
T ss_dssp             CSSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECC
T ss_pred             CCCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEEC
Confidence            456899999999 899999998654       49999987654321          122232222111            


Q ss_pred             -----------CCcEEEEeccccccccc------c-----CCCCCcccccCCCCCccc--cccCCCCCCCCCCCCcCcee
Q 046899          133 -----------DQSVVLWSIQDHVSALA------A-----EPGSAKSTASGGANSKNA--SKSGGNGDKPLESPSIGARG  188 (407)
Q Consensus       133 -----------d~~i~~w~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~--~~~~~~~i~i~d~~~~~~~~  188 (407)
                                 |+.+++|++......+.      .     ....+..++..+....++  +++.|+.+++||..+++.+.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                       78899999865422111      0     111122222333333443  45578999999999999888


Q ss_pred             eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC----cE
Q 046899          189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN----SI  264 (407)
Q Consensus       189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg----~i  264 (407)
                      .+. |...|.+++|+|++ .++++++ ++.+++|+..++..........|...|.+++|+| ++.++++++.|+    .+
T Consensus       172 ~~~-~~~~V~~v~fspdg-~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i  247 (365)
T 4h5i_A          172 EIE-TRGEVKDLHFSTDG-KVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVL  247 (365)
T ss_dssp             EEE-CSSCCCEEEECTTS-SEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEE
T ss_pred             EeC-CCCceEEEEEccCC-ceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEE
Confidence            875 78889999999999 7888887 5567778877776433345567889999999999 999999999887    68


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc-ccCCCcccCCCCcCcc
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY-GELKYPIIHPAYSSDM  343 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~  343 (407)
                      ++||+......  ......+.+|..+|++++|+|+|++ ||+|+.|++|+|||+++++.+..+ .+|..+|++++|||| 
T Consensus       248 ~~~~~~~~~~~--~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd-  323 (365)
T 4h5i_A          248 TKISIKSGNTS--VLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD-  323 (365)
T ss_dssp             EEEEEETTEEE--EEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT-
T ss_pred             eecccccceec--ceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCC-
Confidence            88998762100  1124567789999999999999995 589999999999999999888774 689999999999999 


Q ss_pred             hhccccceeeeeEeeCccceeeeEEEeeeEEEeecccccc--CChHHHHHHHhhcc
Q 046899          344 LDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY--RPEEEVLAELDKFK  397 (407)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~h~  397 (407)
                                       +.+|+++|.|++|||||+.....  ....+.+.+++.|.
T Consensus       324 -----------------g~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l~kl~~~~  362 (365)
T 4h5i_A          324 -----------------STYVASVSAANTIHIIKLPLNYANYTSMKQKISKLEHHH  362 (365)
T ss_dssp             -----------------SCEEEEEETTSEEEEEECCTTTTC---------------
T ss_pred             -----------------CCEEEEEeCCCeEEEEEcCCCCcCccCccccceeeeccc
Confidence                             89999999999999999964322  22345555666543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.4e-35  Score=274.74  Aligned_cols=275  Identities=14%  Similarity=0.153  Sum_probs=209.9

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc--cccCcCCCCCCC---------------CCcEEEEe
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH--AVLGAADSHPDL---------------DQSVVLWS  140 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~---------------d~~i~~w~  140 (407)
                      ...+|...|++|+|+|.++++||+|+.||+|+|||+.++....  .+.+|...+.++               |++|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            4457999999999999888899999999999999998775433  334565544322               99999999


Q ss_pred             ccccccccccCCC----CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC
Q 046899          141 IQDHVSALAAEPG----SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD  216 (407)
Q Consensus       141 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d  216 (407)
                      +++..........    ....+........+++++.++.+++||+. ++.+..+.+|...|++++|+|++..+|++|+.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence            9876432222111    12222333344568889999999999986 456778889999999999999987789999999


Q ss_pred             CcEEEEEcCCCCCC-ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC------
Q 046899          217 SCLILWDARSGSTP-AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA------  289 (407)
Q Consensus       217 g~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~------  289 (407)
                      +.|++||+++.... ......+|...|++++|+| ++++|++|+.||.|++||++.      +.....+..|..      
T Consensus       273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~------~~~~~~~~~~~~~~~~~~  345 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQ------WDCPLGLIPHPHRHFQHL  345 (435)
T ss_dssp             SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSS------SSSEEEECCCCCCCCSSS
T ss_pred             ceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCC------CccceEEecccccccccc
Confidence            99999999987632 2234457999999999999 999999999999999999998      677776665542      


Q ss_pred             CEEEEEEcCCCCCEEEE-----------eeCCCeEEEEeCCCCCcccccc-cCCCcccCC-CCcCcchhccccceeeeeE
Q 046899          290 AVLCVQWSPDKSSVFGS-----------SAEDGILNIWDHEKIGEKQDYG-ELKYPIIHP-AYSSDMLDIETKLLTSIGM  356 (407)
Q Consensus       290 ~v~~v~~~~~~~~ll~s-----------~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~-~~s~d~~~~~~~~~~~~~~  356 (407)
                      .+....|+|++..+++.           +..++.|++||..+++.+..+. .|...|.++ +|+||              
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd--------------  411 (435)
T 4e54_B          346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM--------------  411 (435)
T ss_dssp             CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT--------------
T ss_pred             eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC--------------
Confidence            23345666666644322           2244689999999988876654 577778887 58888              


Q ss_pred             eeCccceeeeEEEeeeEEEeecc
Q 046899          357 HLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       357 ~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                          +..|++|+ |++|+||++.
T Consensus       412 ----g~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          412 ----GDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             ----SSCEEEEC-SSEEEECCCC
T ss_pred             ----CCEEEEEc-CCcEEEEECC
Confidence                77888776 8899999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.7e-34  Score=261.10  Aligned_cols=273  Identities=14%  Similarity=0.170  Sum_probs=197.8

Q ss_pred             CCCeeEEEEeec---ccccCc------cceEEEEeecccCcccCC-cceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCC
Q 046899           36 VWPSLSCRWGPQ---LEQATY------KNRQRLYLSEQFNEEARS-PFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDS  105 (407)
Q Consensus        36 ~~p~~s~~~~~~---~~~~~~------~~~~~i~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d  105 (407)
                      +-+..++.|.|+   +++++.      |+.+++|     +..... .........+|...|++++|+| ++. +++++.|
T Consensus        42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~-----~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~d  114 (357)
T 4g56_B           42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVF-----KDPEGAPNESLCTAGVQTEAGVTDVAWVS-EKG-ILVASDS  114 (357)
T ss_dssp             CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEE-----SSCC---CGGGCSEEEECSSCEEEEEEET-TTE-EEEEETT
T ss_pred             cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEE-----ECCCCCcceeEecccCCCCCCEEEEEEcC-CCC-EEEEECC
Confidence            445567899885   777765      5566666     222111 1223445568999999999999 665 5567789


Q ss_pred             CcEEEEeCcCCCCccc----ccCcCCCCC------CC--------CCcEEEEecccccc--ccccCCCCCcccccCCCC-
Q 046899          106 PDVLIWDVEAQPNRHA----VLGAADSHP------DL--------DQSVVLWSIQDHVS--ALAAEPGSAKSTASGGAN-  164 (407)
Q Consensus       106 g~i~vwd~~~~~~~~~----~~~~~~~~~------~~--------d~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~-  164 (407)
                      |+|+|||+.+++....    ..+|...+.      +.        |++|++||+.++..  .+..+...+..+...... 
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~  194 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD  194 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence            9999999988764332    223433322      21        99999999988754  334444444444443333 


Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcce
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI  242 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  242 (407)
                      ..+++++.|+.+++||+.+++....+.  .|...+.+++|+|++..+|++|+.|+.|++||+++++  ....+..|...|
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~~~~~~v  272 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--SAQTSAVHSQNI  272 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--GCEEECCCSSCE
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc--EeEEEeccceeE
Confidence            457889999999999999988776654  4677899999999876899999999999999999887  677888999999


Q ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCCC
Q 046899          243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      ++++|+|.++++|++|+.||.|+|||+++      ++++..+ +|...|++|+|+| ++. +|+|++.|++|++||+.+.
T Consensus       273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~------~~~~~~~-~H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISEDCTVAVLDADF------SEVFRDL-SHRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTS------CEEEEEC-CCSSCEEEEEECSSSTT-EEEEEETTSCEEEEECC--
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEECCC------CcEeEEC-CCCCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCC
Confidence            99999995557899999999999999998      6666554 7999999999999 566 5689999999999999875


Q ss_pred             Cccc
Q 046899          322 GEKQ  325 (407)
Q Consensus       322 ~~~~  325 (407)
                      ....
T Consensus       345 ~~~~  348 (357)
T 4g56_B          345 GRTE  348 (357)
T ss_dssp             ----
T ss_pred             Cccc
Confidence            4443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-35  Score=298.16  Aligned_cols=354  Identities=10%  Similarity=0.000  Sum_probs=237.9

Q ss_pred             hhhhhhhccCceEEEeeeecccCCCeeEEEEeec--ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE
Q 046899           14 DRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ--LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE   91 (407)
Q Consensus        14 ~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~   91 (407)
                      -.+++|.....-.   +..+...-+...+.|.|.  +++++.|+.+++|   +..      .......+.|.+.|++++|
T Consensus        39 g~I~lw~~~~~~~---~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lW---d~~------~~~~~~~~~~~~~V~~v~~  106 (902)
T 2oaj_A           39 GEVHIYGQQQVEV---VIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVL---SLY------SQKVLTTVFVPGKITSIDT  106 (902)
T ss_dssp             SEEEEECSTTCEE---EEECSSCCCEEEEEEETTTEEEEEETTCEEEEE---ETT------TCSEEEEEECSSCEEEEEC
T ss_pred             CEEEEEeCCCcEE---EEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEE---ECC------CCcEEEEEcCCCCEEEEEE
Confidence            3567787654432   222334557778888773  8899999999999   221      1223444468899999999


Q ss_pred             eCCCCeEEEEeeCCCcEEEEeCcCCCCc-----------ccccCcCCCCCCC---------------CCcEEEEeccccc
Q 046899           92 LPQNSKIVATHTDSPDVLIWDVEAQPNR-----------HAVLGAADSHPDL---------------DQSVVLWSIQDHV  145 (407)
Q Consensus        92 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~-----------~~~~~~~~~~~~~---------------d~~i~~w~~~~~~  145 (407)
                      +| ++++|++|+.||+|++||+.+....           ....+|...+.++               |+.+ +||+.+..
T Consensus       107 sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~  184 (902)
T 2oaj_A          107 DA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE  184 (902)
T ss_dssp             CT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred             CC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence            99 8899999999999999999876542           1223333333221               8899 99998764


Q ss_pred             cc--cccC------------------CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee--E---ee--------
Q 046899          146 SA--LAAE------------------PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK--Y---LG--------  192 (407)
Q Consensus       146 ~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~---~~--------  192 (407)
                      ..  +..+                  ...+..+........+++++.|+.+++||..+++++..  +   ..        
T Consensus       185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~  264 (902)
T 2oaj_A          185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYI  264 (902)
T ss_dssp             EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCC
T ss_pred             eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCC
Confidence            32  2211                  12233344444456799999999999999998877643  2   11        


Q ss_pred             -----cccCEEEEEEC----CCCCcEEEEEeCC-----------------------------------------------
Q 046899          193 -----HEDTVEDVQFC----PSSAQEFCSVGDD-----------------------------------------------  216 (407)
Q Consensus       193 -----~~~~v~~l~~~----~~~~~~l~s~~~d-----------------------------------------------  216 (407)
                           |...|++++|+    |++..+|++|+.|                                               
T Consensus       265 ~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  344 (902)
T 2oaj_A          265 RDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP  344 (902)
T ss_dssp             CCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred             CCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence                 34578999994    4432456666443                                               


Q ss_pred             -----------------------------CcEEEEEcCCCCCCcee------e---------------------------
Q 046899          217 -----------------------------SCLILWDARSGSTPAVK------V---------------------------  234 (407)
Q Consensus       217 -----------------------------g~i~iwd~~~~~~~~~~------~---------------------------  234 (407)
                                                   |.|++||+.++.. ...      .                           
T Consensus       345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~-~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~  423 (902)
T 2oaj_A          345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF-TDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSA  423 (902)
T ss_dssp             EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE-ECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHT
T ss_pred             eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc-ccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhc
Confidence                                         3344444433210 000      0                           


Q ss_pred             -------ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee--ec-----CCCCCEEEEEEcCCC
Q 046899          235 -------EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK--FE-----GHSAAVLCVQWSPDK  300 (407)
Q Consensus       235 -------~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~--~~-----~h~~~v~~v~~~~~~  300 (407)
                             +.+|...+.+++|+| ++++|++|+.|++|++||+......  ......  +.     +|...|++|+|+|++
T Consensus       424 ~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~--~~~~~~~~l~~~~~~~h~~~V~svafspdg  500 (902)
T 2oaj_A          424 AQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQ--DNASFEVNLSRTLNKAKELAVDKISFAAET  500 (902)
T ss_dssp             TBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTT--TTBCEEEEHHHHTTCSSSCCEEEEEEETTT
T ss_pred             ccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCcccc--CCceEEeechhhcCCCCCCceeEEEecCCC
Confidence                   112223333445578 8899999999999999999872100  001111  11     789999999999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCC---------------------------------------------cccccccCCCccc
Q 046899          301 SSVFGSSAEDGILNIWDHEKIG---------------------------------------------EKQDYGELKYPII  335 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~~~~---------------------------------------------~~~~~~~~~~~v~  335 (407)
                      ++ ||+|+.||+|+|||+.+++                                             ++..+.+|..+|+
T Consensus       501 ~~-LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~  579 (902)
T 2oaj_A          501 LE-LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS  579 (902)
T ss_dssp             TE-EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred             Ce-EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence            95 5899999999999998653                                             2455677899999


Q ss_pred             CCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh-hcccceeEeecc
Q 046899          336 HPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD-KFKSHIFGCDKS  406 (407)
Q Consensus       336 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s  406 (407)
                      +++||||                  + .|++|+.|++|+|||+........+.+ ..+. +|.+.|++|+||
T Consensus       580 svafSpd------------------G-~lAsgs~D~tv~lwd~~~~~~~~~~~~-~~~~~gh~~~V~sv~Fs  631 (902)
T 2oaj_A          580 AINNSNI------------------G-FVGIAYAAGSLMLIDRRGPAIIYMENI-REISGAQSACVTCIEFV  631 (902)
T ss_dssp             EEEECBT------------------S-EEEEEETTSEEEEEETTTTEEEEEEEG-GGTCSSCCCCEEEEEEE
T ss_pred             EEEecCC------------------c-EEEEEeCCCcEEEEECCCCeEEEEeeh-hHhccccccceEEEEEE
Confidence            9999998                  8 999999999999999873211100112 4565 999999999998

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.3e-34  Score=284.23  Aligned_cols=285  Identities=17%  Similarity=0.195  Sum_probs=219.5

Q ss_pred             cCCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           35 LVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        35 ~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      +.-+...+.|.|    .+++++.|+.+++|   ++.............+.+|.+.|++++|+| ++++|+||+.||+|+|
T Consensus       381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W---~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          381 HTDMVTAIATPIDNADIIVSASRDKSIILW---KLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRL  456 (694)
T ss_dssp             CSSCEEEEECCTTCCSEEEEEETTSEEEEE---ECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             CCceeEEEEecCCCCCEEEEEeCCCcEEEE---EccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEE
Confidence            444566777765    37899999999999   333222222233455668999999999999 8899999999999999


Q ss_pred             EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE
Q 046899          111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY  190 (407)
Q Consensus       111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~  190 (407)
                      ||+.++.....+.+|...+                          ..+........+++++.|+.+++||..........
T Consensus       457 wd~~~~~~~~~~~~h~~~v--------------------------~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTKDV--------------------------LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             EETTTTEEEEEEECCSSCE--------------------------EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             EECCCCcceeEEeCCCCCE--------------------------EEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence            9999887666666654331                          11112222345888999999999997654332222


Q ss_pred             ---eecccCEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          191 ---LGHEDTVEDVQFCPSSA-QEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       191 ---~~~~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                         .+|...|.+++|+|++. ..|++++.|++|++||+++.+  ....+.+|...|++++|+| ++++|++|+.||.|++
T Consensus       511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~i  587 (694)
T 3dm0_A          511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLL  587 (694)
T ss_dssp             SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEE
T ss_pred             cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEE
Confidence               36888999999999862 479999999999999999887  6778889999999999999 9999999999999999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC--------------
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY--------------  332 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~--------------  332 (407)
                      ||+++      ++++..+.. ...|.+++|+|++. ++++ +.|+.|++||+++.+.+..+..+..              
T Consensus       588 wd~~~------~~~~~~~~~-~~~v~~~~~sp~~~-~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (694)
T 3dm0_A          588 WDLAE------GKKLYSLEA-NSVIHALCFSPNRY-WLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT  658 (694)
T ss_dssp             EETTT------TEEEECCBC-SSCEEEEEECSSSS-EEEE-EETTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred             EECCC------CceEEEecC-CCcEEEEEEcCCCc-EEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence            99998      788888764 56899999999987 4444 4577899999998776655543211              


Q ss_pred             -----cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          333 -----PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       333 -----~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                           .+++++||||                  +..|++|+.||+|+||++.
T Consensus       659 ~~~~~~~~~l~~spd------------------g~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          659 KRKVIYCTSLNWSAD------------------GSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             --CCCCEEEEEECTT------------------SSEEEEEETTSEEEEEEC-
T ss_pred             CceeEEeeeEEEcCC------------------CCEEEEEcCCCeEEEEecc
Confidence                 1344555555                  8899999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.2e-34  Score=269.74  Aligned_cols=315  Identities=17%  Similarity=0.200  Sum_probs=231.5

Q ss_pred             hhhhhccCceE-EEeeeecccCCCeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC
Q 046899           16 YTQWKSLVPVL-YDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP   93 (407)
Q Consensus        16 ~~~w~~~~~~~-y~~l~~~~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~   93 (407)
                      .++|+...+.. ...+..|... ....+.+.+ .+++++.|+.+++|-   ...     ........+|.+.|++++|+|
T Consensus       102 ~~~w~~~~~~~~~~~l~~h~~~-v~~~~~~~~~~l~sgs~dg~i~vwd---~~~-----~~~~~~~~~h~~~V~~l~~~~  172 (464)
T 3v7d_B          102 LKNWYNPKFVPQRTTLRGHMTS-VITCLQFEDNYVITGADDKMIRVYD---SIN-----KKFLLQLSGHDGGVWALKYAH  172 (464)
T ss_dssp             HHHHHCTTCCCEEEEEECCSSS-CEEEEEEETTEEEEEETTSCEEEEE---TTT-----TEEEEEECCCSSCEEEEEECS
T ss_pred             HhhhcCCCcCcceEEEcCCCCC-cEEEEEECCCEEEEEcCCCcEEEEE---CCC-----CcEEEEEeCCCcCEEEEEEcC
Confidence            46776655421 2223333222 122344444 588999999999992   111     122334457999999999998


Q ss_pred             CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCC
Q 046899           94 QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGG  173 (407)
Q Consensus        94 ~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (407)
                       ++ +|++|+.||+|++||+.+++....+.+|...+..       ..+.                 .......+++++.+
T Consensus       173 -~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~-------l~~~-----------------~~~~~~~l~s~s~d  226 (464)
T 3v7d_B          173 -GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC-------LDIV-----------------EYKNIKYIVTGSRD  226 (464)
T ss_dssp             -TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE-------EEEE-----------------ESSSCEEEEEEETT
T ss_pred             -CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEE-------EEEe-----------------cCCCCCEEEEEcCC
Confidence             55 8999999999999999988777666665443211       1100                 00011235555666


Q ss_pred             CCCCCCCCCCcC-----------------------ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          174 NGDKPLESPSIG-----------------------ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       174 ~~i~i~d~~~~~-----------------------~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      +.+++||+....                       .+..+.+|...|.++.  +++ .++++|+.||.|++||+++++  
T Consensus       227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~--  301 (464)
T 3v7d_B          227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMK--  301 (464)
T ss_dssp             SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTE--
T ss_pred             CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCc--
Confidence            666666665443                       2456678889998885  555 789999999999999999887  


Q ss_pred             ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                      ....+.+|...|.+++|+| +++++++|+.||.|++||+++      ++++.++.+|...|.+++|++  . .+++++.|
T Consensus       302 ~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~d  371 (464)
T 3v7d_B          302 CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------GELMYTLQGHTALVGLLRLSD--K-FLVSAAAD  371 (464)
T ss_dssp             EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEEEEEECS--S-EEEEEETT
T ss_pred             EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCC
Confidence            6778889999999999999 899999999999999999998      899999999999999999984  4 45799999


Q ss_pred             CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899          311 GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL  390 (407)
Q Consensus       311 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~  390 (407)
                      |.|++||+++........ +...+..++|+++                  +..+++++ |+.|+|||+.      +++++
T Consensus       372 g~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~l~~~~-dg~i~iwd~~------~g~~~  425 (464)
T 3v7d_B          372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVS------------------DNILVSGS-ENQFNIYNLR------SGKLV  425 (464)
T ss_dssp             SEEEEEETTTCCEEEEEE-CTTCCCEEEEEEC------------------SSEEEEEE-TTEEEEEETT------TCCEE
T ss_pred             CcEEEEECCCCceeeeec-CCCCccEEEEEeC------------------CCEEEEec-CCeEEEEECC------CCcEE
Confidence            999999999876554442 3444444555554                  77888887 9999999998      67777


Q ss_pred             HH-HhhcccceeEeecc
Q 046899          391 AE-LDKFKSHIFGCDKS  406 (407)
Q Consensus       391 ~~-~~~h~~~v~~~~~s  406 (407)
                      .. +.+|.+.|.+++|+
T Consensus       426 ~~~~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          426 HANILKDADQIWSVNFK  442 (464)
T ss_dssp             ESCTTTTCSEEEEEEEE
T ss_pred             ehhhccCCCcEEEEEec
Confidence            65 77899999999986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=257.92  Aligned_cols=266  Identities=19%  Similarity=0.227  Sum_probs=218.5

Q ss_pred             eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEe
Q 046899           75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWS  140 (407)
Q Consensus        75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~  140 (407)
                      ....+.+|.+.|++++| | ++++|++|+.||.|++||+.+......+..|...+...              |+.+.+|+
T Consensus        10 ~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            34455689999999999 7 78899999999999999998876665555554433222              89999999


Q ss_pred             ccccc-----cccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEe
Q 046899          141 IQDHV-----SALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVG  214 (407)
Q Consensus       141 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~  214 (407)
                      +....     ..+..+...+..+..  ....+++++.++.+++||  ..+.+..+..|...+.+++|.| ++ .++++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~  162 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE-NKFLTAS  162 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT-TEEEEEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC-CEEEEEE
Confidence            87642     223333333333333  345788899999999999  6677788889999999999998 55 8999999


Q ss_pred             CCCcEEEEEcCCCCCCceeeecc-cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEE
Q 046899          215 DDSCLILWDARSGSTPAVKVEKA-HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLC  293 (407)
Q Consensus       215 ~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~  293 (407)
                      .||.|++||..  .  ....+.. |...+.+++|+| ++. +++++.||.|++||+++      ++++..+..|...|++
T Consensus       163 ~d~~i~i~d~~--~--~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~  230 (313)
T 3odt_A          163 ADKTIKLWQND--K--VIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHT------GDVLRTYEGHESFVYC  230 (313)
T ss_dssp             TTSCEEEEETT--E--EEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTT------CCEEEEEECCSSCEEE
T ss_pred             CCCCEEEEecC--c--eEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCc------hhhhhhhhcCCceEEE
Confidence            99999999933  2  3444555 899999999999 766 99999999999999998      8999999999999999


Q ss_pred             EEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899          294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL  373 (407)
Q Consensus       294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i  373 (407)
                      ++|+|++. + ++++.||.|++||+++++....+..+..+|++++|+|+                  +. +++++.|+.|
T Consensus       231 ~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~------------------~~-~~~~~~dg~i  289 (313)
T 3odt_A          231 IKLLPNGD-I-VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN------------------GD-IIVGSSDNLV  289 (313)
T ss_dssp             EEECTTSC-E-EEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT------------------SC-EEEEETTSCE
T ss_pred             EEEecCCC-E-EEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC------------------CC-EEEEeCCCcE
Confidence            99999994 5 69999999999999999999999999999999999887                  54 6789999999


Q ss_pred             EEeeccc
Q 046899          374 EIWRMID  380 (407)
Q Consensus       374 ~iwd~~~  380 (407)
                      ++||+..
T Consensus       290 ~iw~~~~  296 (313)
T 3odt_A          290 RIFSQEK  296 (313)
T ss_dssp             EEEESCG
T ss_pred             EEEeCCC
Confidence            9999984

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.5e-34  Score=263.90  Aligned_cols=273  Identities=17%  Similarity=0.179  Sum_probs=213.0

Q ss_pred             eEEEeeCCCceEEEEEeCCCC-eEEEEeeCCCcEEEEeCcCCCCccccc--CcCCCCCCC---------------CCcEE
Q 046899           76 KFKTIIHPGEVNRIRELPQNS-KIVATHTDSPDVLIWDVEAQPNRHAVL--GAADSHPDL---------------DQSVV  137 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~---------------d~~i~  137 (407)
                      .....+|.+.|++++|+| ++ ++|++|+.||.|++||+.++.....+.  +|...+.++               |+.++
T Consensus        66 ~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             EEEECCCSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred             EEeccCCCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence            345568999999999999 55 899999999999999999877665443  343322211               89999


Q ss_pred             EEeccccccc-cccCC---CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE
Q 046899          138 LWSIQDHVSA-LAAEP---GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV  213 (407)
Q Consensus       138 ~w~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~  213 (407)
                      +||+.+.... +....   ..+..+........+++++.++.+++||+ .++.+..+.+|...|.+++|+|++..+|+++
T Consensus       145 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  223 (383)
T 3ei3_B          145 LRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATS  223 (383)
T ss_dssp             EEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred             EEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence            9999865322 22111   22334444445567899999999999998 5778889999999999999999994499999


Q ss_pred             eCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC---
Q 046899          214 GDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS---  288 (407)
Q Consensus       214 ~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~---  288 (407)
                      +.|+.|++||+++...  .....+ .|...|.+++|+|.++.+|++++.|+.|++||+++      ++.+..+..|.   
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~  296 (383)
T 3ei3_B          224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD------WSKPDQIIIHPHRQ  296 (383)
T ss_dssp             ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB------TTSCSEEEECCBCC
T ss_pred             eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC------Cccccccccccccc
Confidence            9999999999998431  134444 79999999999996789999999999999999998      56655555432   


Q ss_pred             --------------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc--CCCcccCCCCcCcchhcccccee
Q 046899          289 --------------AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE--LKYPIIHPAYSSDMLDIETKLLT  352 (407)
Q Consensus       289 --------------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~~~~~~~~  352 (407)
                                    ..+..++|+|++.+   +++.|+.|++||+.+++.+..+.+  +...+..++|+|+          
T Consensus       297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~----------  363 (383)
T 3ei3_B          297 FQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPT----------  363 (383)
T ss_dssp             CTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTT----------
T ss_pred             cccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecC----------
Confidence                          34555777777764   778999999999999998888876  3455666688888          


Q ss_pred             eeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          353 SIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       353 ~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                              +..|++++ |++|+|||+.
T Consensus       364 --------g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          364 --------GDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             --------SSEEEEEE-TTEEEEEECC
T ss_pred             --------ccEEEEec-CCcEEEEecC
Confidence                    88899996 9999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.3e-34  Score=303.94  Aligned_cols=348  Identities=15%  Similarity=0.197  Sum_probs=274.8

Q ss_pred             hhhhhhccCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE
Q 046899           15 RYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE   91 (407)
Q Consensus        15 ~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~   91 (407)
                      .+++|+.........+.  ...-+..++.|.|+   +++++.|+.+++|.   ..  ..   .......+|.+.|.+++|
T Consensus       638 ~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd---~~--~~---~~~~~~~~~~~~v~~~~~  707 (1249)
T 3sfz_A          638 TLQVFKAETGEKLLDIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWD---SA--TG---KLVHTYDEHSEQVNCCHF  707 (1249)
T ss_dssp             CEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE---TT--TC---CEEEEEECCSSCEEEEEE
T ss_pred             eEEEEECCCCCEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEE---CC--CC---ceEEEEcCCCCcEEEEEE
Confidence            46677765554433333  34456778889874   88899999999992   21  11   223344579999999999


Q ss_pred             eCC-CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecccccccc--------
Q 046899           92 LPQ-NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHVSAL--------  148 (407)
Q Consensus        92 ~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~~~~--------  148 (407)
                      +|. ++.++++|+.||.|++||+.++.....+.+|...+...              |+.+++||+.+.....        
T Consensus       708 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~  787 (1249)
T 3sfz_A          708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF  787 (1249)
T ss_dssp             CSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred             ecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence            984 45689999999999999999988877777766544322              8999999987652210        


Q ss_pred             -----------------cc--------------------------------CCCCCcccccCCCCCccccccCCCCCCCC
Q 046899          149 -----------------AA--------------------------------EPGSAKSTASGGANSKNASKSGGNGDKPL  179 (407)
Q Consensus       149 -----------------~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~  179 (407)
                                       ..                                +...+...........+++++.++.+++|
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw  867 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW  867 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                             01                                11111222223334567788999999999


Q ss_pred             CCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC--------------------------------
Q 046899          180 ESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG--------------------------------  227 (407)
Q Consensus       180 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~--------------------------------  227 (407)
                      +..++..+..+.+|...|.+++|+|++ ..|++++.||.|++||+.+.                                
T Consensus       868 d~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          868 NIDSRLKVADCRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             EcCCCceeeecCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            999999999999999999999999998 78999999999999986421                                


Q ss_pred             ---------------------------------------------CCCceeeecccCcceEEEEecCCCCCEEEEEeCCC
Q 046899          228 ---------------------------------------------STPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN  262 (407)
Q Consensus       228 ---------------------------------------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg  262 (407)
                                                                   .......+.+|...|.+++|+| +++++++++.||
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg 1025 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDS 1025 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSS
T ss_pred             EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCC
Confidence                                                         0012334457888999999999 899999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      .|++||+.+      ++.. .+..|...|.+++|+|++. + ++++.|+.|++||+.+++....+.+|..+|++++|+||
T Consensus      1026 ~i~vwd~~~------~~~~-~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A         1026 VIQVWNWQT------GDYV-FLQAHQETVKDFRLLQDSR-L-LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096 (1249)
T ss_dssp             BEEEEETTT------TEEE-CCBCCSSCEEEEEECSSSE-E-EEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSS
T ss_pred             EEEEEECCC------CceE-EEecCCCcEEEEEEcCCCc-E-EEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCC
Confidence            999999998      5544 4567999999999999875 4 58999999999999999999999999999999999998


Q ss_pred             chhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          343 MLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                                        +..+++++.|++|++||+.      +++++..+.+|.+.|++++||+
T Consensus      1097 ------------------~~~l~s~s~d~~v~iwd~~------~~~~~~~l~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A         1097 ------------------ATKFSSTSADKTAKIWSFD------LLSPLHELKGHNGCVRCSAFSL 1137 (1249)
T ss_dssp             ------------------SSSCEEECCSSCCCEECSS------SSSCSBCCCCCSSCEEEEEECS
T ss_pred             ------------------CCEEEEEcCCCcEEEEECC------CcceeeeeccCCCcEEEEEECC
Confidence                              8899999999999999998      6778888999999999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.8e-35  Score=274.27  Aligned_cols=301  Identities=12%  Similarity=0.102  Sum_probs=220.9

Q ss_pred             EEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEE-EEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899           41 SCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRI-RELPQNSKIVATHTDSPDVLIWDVEAQ  116 (407)
Q Consensus        41 s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~tg~~dg~i~vwd~~~~  116 (407)
                      .+.|.|   .+++++.++.+++|-   ......      ....... .+.++ .|+| ++++|++|+.||.|++||+.++
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d---~~~~~~------~~~~~~~-~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~  129 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFN---TIIRDG------SKMLKRA-DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFN  129 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEE---CCSEET------TTTSCSC-CEEEEEEECS-SSCEEEEEETTSCEEEECTTSC
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEE---ecccce------eeEEecC-CceEEEEEec-CCCEEEEEECCCCEEEEeCCCc
Confidence            345655   488999999999992   221111      1111122 44444 5555 8899999999999999999877


Q ss_pred             CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC
Q 046899          117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT  196 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~  196 (407)
                      .....+.+|...+                          ..+........+++++.|+.+++||+.+++.+..+.+|...
T Consensus       130 ~~~~~~~~h~~~v--------------------------~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  183 (420)
T 3vl1_A          130 LQREIDQAHVSEI--------------------------TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT  183 (420)
T ss_dssp             EEEEETTSSSSCE--------------------------EEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC
T ss_pred             ceeeecccccCcc--------------------------EEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc
Confidence            6555544443321                          11112222345788999999999999999999999999999


Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc---cC---------------------cceEEEEecCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA---HN---------------------ADIHCVDWNPHDV  252 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~---------------------~~v~~l~~~~~~~  252 (407)
                      |.+++|+|++ .+|++++.|+.|++||+++++  ....+..   +.                     ..+.+++|+| ++
T Consensus       184 v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~  259 (420)
T 3vl1_A          184 VTDIAIIDRG-RNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YG  259 (420)
T ss_dssp             EEEEEEETTT-TEEEEEETTSCEEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TT
T ss_pred             EEEEEEcCCC-CEEEEEcCCCcEEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CC
Confidence            9999999998 899999999999999999887  4555543   33                     3444555678 88


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc-cccccc-
Q 046899          253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE-KQDYGE-  329 (407)
Q Consensus       253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~-~~~~~~-  329 (407)
                      ++|++|+.||.|++||+++      ++.+..+. .|...|++++|+|++..+|++|+.||.|++||+++++. +..+.. 
T Consensus       260 ~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  333 (420)
T 3vl1_A          260 KYVIAGHVSGVITVHNVFS------KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN  333 (420)
T ss_dssp             EEEEEEETTSCEEEEETTT------CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred             CEEEEEcCCCeEEEEECCC------CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence            9999999999999999998      67666664 48899999999999995668999999999999998755 555655 


Q ss_pred             CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCC---hHHHHHHHhhcccceeEeecc
Q 046899          330 LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRP---EEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       330 ~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s  406 (407)
                      +..+++.+.+ ++                  +..+++++.|++|+||++.......   .......+.+|.+.|.+++|+
T Consensus       334 ~~~~v~~~~~-~~------------------~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  394 (420)
T 3vl1_A          334 EGTPINNVYF-AA------------------GALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYV  394 (420)
T ss_dssp             TTSCEEEEEE-ET------------------TEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEE
T ss_pred             CCCCceEEEe-CC------------------CCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEc
Confidence            4555544432 22                  6689999999999999997421100   011122356788999999998


Q ss_pred             C
Q 046899          407 C  407 (407)
Q Consensus       407 ~  407 (407)
                      +
T Consensus       395 ~  395 (420)
T 3vl1_A          395 S  395 (420)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-34  Score=306.54  Aligned_cols=353  Identities=16%  Similarity=0.213  Sum_probs=274.7

Q ss_pred             hhhhhhccCceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcc-----------------------
Q 046899           15 RYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEE-----------------------   68 (407)
Q Consensus        15 ~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~-----------------------   68 (407)
                      .+.+|+.........+.  ...-+...+.|.|+   +++++.|+.+++|........                       
T Consensus       724 ~v~vwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  801 (1249)
T 3sfz_A          724 FLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV  801 (1249)
T ss_dssp             CEEEEETTSSSEEEEEC--CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred             eEEEEECCCcchhheec--CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence            45667655544333332  33446677888884   889999999999954300000                       


Q ss_pred             ------------------------cCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC
Q 046899           69 ------------------------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG  124 (407)
Q Consensus        69 ------------------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~  124 (407)
                                              ............+|.+.|.+++|+| +++++++|+.||.|++||+.++.....+.+
T Consensus       802 ~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  880 (1249)
T 3sfz_A          802 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRG  880 (1249)
T ss_dssp             CCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             EEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCC
Confidence                                    0000011112237999999999999 889999999999999999998877777666


Q ss_pred             cCCCCCCC--------------CCcEEEEeccccccc---------------------------------------cccC
Q 046899          125 AADSHPDL--------------DQSVVLWSIQDHVSA---------------------------------------LAAE  151 (407)
Q Consensus       125 ~~~~~~~~--------------d~~i~~w~~~~~~~~---------------------------------------~~~~  151 (407)
                      |...+...              |+.+++|++......                                       ....
T Consensus       881 h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  960 (1249)
T 3sfz_A          881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP  960 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC
T ss_pred             CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc
Confidence            65543222              899999997642110                                       0001


Q ss_pred             CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899          152 PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA  231 (407)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  231 (407)
                      ...+...........+++++.+|.+.+|+..+++....+.+|...|.+++|+|++ .+|++++.||.|++||+.++.   
T Consensus       961 ~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~--- 1036 (1249)
T 3sfz_A          961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGD--- 1036 (1249)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTE---
T ss_pred             cCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCc---
Confidence            1122223334445568889999999999999999999999999999999999999 789999999999999999877   


Q ss_pred             eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      ......|...|.++.|+| ++ .+++++.||.|++||+.+      ++.+..+.+|...|++++|+|+++++ ++++.|+
T Consensus      1037 ~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~s~d~ 1107 (1249)
T 3sfz_A         1037 YVFLQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVIT------GRIERDFTCHQGTVLSCAISSDATKF-SSTSADK 1107 (1249)
T ss_dssp             EECCBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTT------TCCCEEEECCSSCCCCEEECSSSSSC-EEECCSS
T ss_pred             eEEEecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCC------CceeEEEcccCCcEEEEEECCCCCEE-EEEcCCC
Confidence            335568999999999999 54 678899999999999998      88999999999999999999999976 6999999


Q ss_pred             eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHH
Q 046899          312 ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA  391 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~  391 (407)
                      +|++||+.+++....+.+|..+|++++||||                  +..|++++.||+|+|||+.      +++++.
T Consensus      1108 ~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d------------------g~~lat~~~dg~i~vwd~~------~~~~~~ 1163 (1249)
T 3sfz_A         1108 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLD------------------GILLATGDDNGEIRIWNVS------DGQLLH 1163 (1249)
T ss_dssp             CCCEECSSSSSCSBCCCCCSSCEEEEEECSS------------------SSEEEEEETTSCCCEEESS------SSCCCC
T ss_pred             cEEEEECCCcceeeeeccCCCcEEEEEECCC------------------CCEEEEEeCCCEEEEEECC------CCceEE
Confidence            9999999999999999999999999999999                  8899999999999999998      444443


Q ss_pred             H---------HhhcccceeEeeccC
Q 046899          392 E---------LDKFKSHIFGCDKSC  407 (407)
Q Consensus       392 ~---------~~~h~~~v~~~~~s~  407 (407)
                      .         ..+|.+.|++++||+
T Consensus      1164 ~~~~~~~~~~~~~~~~~v~~l~fs~ 1188 (1249)
T 3sfz_A         1164 SCAPISVEEGTATHGGWVTDVCFSP 1188 (1249)
T ss_dssp             CCCCCC-------CCSCCCEEEECT
T ss_pred             EeccccccccccccCceEEEEEECC
Confidence            3         478999999999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-33  Score=264.28  Aligned_cols=315  Identities=16%  Similarity=0.249  Sum_probs=250.7

Q ss_pred             hhhhhccCceEEEeeeecccCCCeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC
Q 046899           16 YTQWKSLVPVLYDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ   94 (407)
Q Consensus        16 ~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~   94 (407)
                      ..+|+...+.....+..|.-. ....+.+.+ .+++++.|+.+++|-   ...   .  .......+|.+.|.++.|+  
T Consensus       100 ~~~w~~~~~~~~~~l~~h~~~-v~~~~~~~g~~l~sg~~dg~i~vwd---~~~---~--~~~~~~~~h~~~v~~~~~~--  168 (445)
T 2ovr_B          100 DTNWRRGELKSPKVLKGHDDH-VITCLQFCGNRIVSGSDDNTLKVWS---AVT---G--KCLRTLVGHTGGVWSSQMR--  168 (445)
T ss_dssp             HHHHHHSCCCCCEEEECSTTS-CEEEEEEETTEEEEEETTSCEEEEE---TTT---C--CEEEECCCCSSCEEEEEEE--
T ss_pred             hhcccCCCcceeEEecccCCC-cEEEEEEcCCEEEEEECCCcEEEEE---CCC---C--cEEEEEcCCCCCEEEEEec--
Confidence            467887766544555444432 122344433 588999999999992   211   1  1223344799999999987  


Q ss_pred             CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------------CCcEEEEecccccc--ccccCCCCCccccc
Q 046899           95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------------DQSVVLWSIQDHVS--ALAAEPGSAKSTAS  160 (407)
Q Consensus        95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------d~~i~~w~~~~~~~--~~~~~~~~~~~~~~  160 (407)
                       +++|++|+.||+|++||+.+++....+.+|...+.+.            |+++++||+.++..  .+..+...+..+..
T Consensus       169 -~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          169 -DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             -TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             -CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence             4589999999999999999988777777766554332            99999999987643  33334444433333


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                        ....+++++.++.+++||..+++.+..+.+|...|.+++|  ++ .++++++.||.|++||+++++  ....+..|..
T Consensus       248 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~  320 (445)
T 2ovr_B          248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN--CIHTLTGHQS  320 (445)
T ss_dssp             --CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC--EEEEECCCCS
T ss_pred             --CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCC--EEEEEcCCcc
Confidence              3466888999999999999999999999999999999999  45 789999999999999999988  6778889999


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      .+.++.++   ++++++|+.||.|++||+++      ++++..+..   |...|++++|++  . ++++|+.||.|++||
T Consensus       321 ~v~~~~~~---~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          321 LTSGMELK---DNILVSGNADSTVKIWDIKT------GQCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWD  388 (445)
T ss_dssp             CEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEE
T ss_pred             cEEEEEEe---CCEEEEEeCCCeEEEEECCC------CcEEEEEccCCCCCCCEEEEEECC--C-EEEEEeCCCeEEEEE
Confidence            99998885   46999999999999999998      888888886   888999999964  4 457999999999999


Q ss_pred             CCCCCccccc-----ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeee----EEEeecc
Q 046899          318 HEKIGEKQDY-----GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV----LEIWRMI  379 (407)
Q Consensus       318 ~~~~~~~~~~-----~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~----i~iwd~~  379 (407)
                      +.+++.+..+     ..+..+|++++|+|+                  +..+++++.||+    |.|||+.
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          389 LKTGEFIRNLVTLESGGSGGVVWRIRASNT------------------KLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             TTTCCEEEEEEECTTGGGTCEEEEEEECSS------------------EEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCceeeeeeccccCCCCceEEEEEecCC------------------EEEEEEcccCCCCccEEEEEECC
Confidence            9998888777     467788999999888                  888999999997    9999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.8e-34  Score=262.86  Aligned_cols=269  Identities=12%  Similarity=0.091  Sum_probs=213.7

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCCCCCCC--------------CCcEEEEecccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAADSHPDL--------------DQSVVLWSIQDH  144 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~  144 (407)
                      .|.++|++++|+| ++++|++|+.|+.|++||+.+++  ....+.+|...+...              |+.+++|++.+.
T Consensus         6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            4999999999999 88999999999999999999876  566666665443222              899999999876


Q ss_pred             cc----ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc---eee-EeecccCEEEEEECCCCCcEEEEEeCC
Q 046899          145 VS----ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA---RGK-YLGHEDTVEDVQFCPSSAQEFCSVGDD  216 (407)
Q Consensus       145 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~d  216 (407)
                      ..    .+..+...+..+........+++++.++.+++||....+.   ... ..+|...|.+++|+|++ .+|++++.|
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  163 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCD  163 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETT
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCC
Confidence            42    1233444444455555566789999999999999988763   222 34688999999999998 899999999


Q ss_pred             CcEEEEEcC------------------CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 046899          217 SCLILWDAR------------------SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG  278 (407)
Q Consensus       217 g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~  278 (407)
                      |.|++||++                  .+.  ....+..|...|.+++|+| ++++|++++.||.|++||+++      +
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~  234 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGE--LMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK------K  234 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTC--EEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG------T
T ss_pred             CCEEEEEcccccccccccccccccccchhh--heEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC------C
Confidence            999999965                  333  5667778999999999999 899999999999999999998      8


Q ss_pred             CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC--CC--cc------------------------------
Q 046899          279 SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK--IG--EK------------------------------  324 (407)
Q Consensus       279 ~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~--~~--~~------------------------------  324 (407)
                      +++..+..|..+|.+++|+|++. ++++| .|+.|++||++.  ++  ..                              
T Consensus       235 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
T 1k8k_C          235 MAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE  312 (372)
T ss_dssp             TEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred             ceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence            89999999999999999999998 44566 899999999987  31  11                              


Q ss_pred             ------ccc-ccCCCcccCCCCcCcchhccccceeeeeEeeCcc---ceeeeEEEeeeEEEeecc
Q 046899          325 ------QDY-GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG---RLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       325 ------~~~-~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~---~~i~~~~~d~~i~iwd~~  379 (407)
                            ..+ .+|..+|++++|++                 ..+   ..|++++.||+|+|||+.
T Consensus       313 ~~~~~~~~~~~~h~~~v~~~~~~~-----------------~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          313 GSAAAGAGLDSLHKNSVSQISVLS-----------------GGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             ------CCCSSSSSSCEEEEEEEE-----------------STTTSCSEEEEEETTSEEEEEEHH
T ss_pred             cCccccccccccccCCcceeEEec-----------------CCCcceeeEEEecCCCceEEEEec
Confidence                  112 25555555555432                 225   899999999999999997

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.5e-34  Score=284.04  Aligned_cols=249  Identities=17%  Similarity=0.287  Sum_probs=200.0

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-----ccccCcCCCCCCCCCcEEEEeccccccccccC
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-----HAVLGAADSHPDLDQSVVLWSIQDHVSALAAE  151 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~  151 (407)
                      ..+.+|.+.|++|+|+|+++++|+||+.|++|++||+.+....     ..+.+|.                         
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-------------------------  430 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS-------------------------  430 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS-------------------------
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC-------------------------
Confidence            3456899999999999977889999999999999999864321     1222232                         


Q ss_pred             CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899          152 PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA  231 (407)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  231 (407)
                       ..+..+........+++++.|+.+++||+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.......
T Consensus       431 -~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~  508 (694)
T 3dm0_A          431 -HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYT  508 (694)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEE
T ss_pred             -CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCccee
Confidence             222222223334568889999999999999999999999999999999999999 789999999999999986543100


Q ss_pred             -eeeecccCcceEEEEecCCCC--CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee
Q 046899          232 -VKVEKAHNADIHCVDWNPHDV--NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       232 -~~~~~~~~~~v~~l~~~~~~~--~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                       .....+|...|.+++|+| ++  ..+++|+.|+.|++||++.      .++...+.+|...|++++|+|++.+ |++|+
T Consensus       509 ~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~------~~~~~~~~~h~~~v~~v~~spdg~~-l~sg~  580 (694)
T 3dm0_A          509 ISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSN------CKLRSTLAGHTGYVSTVAVSPDGSL-CASGG  580 (694)
T ss_dssp             ECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTT------CCEEEEECCCSSCEEEEEECTTSSE-EEEEE
T ss_pred             eccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCC------CcEEEEEcCCCCCEEEEEEeCCCCE-EEEEe
Confidence             111246888999999999 54  6899999999999999998      7889999999999999999999995 47999


Q ss_pred             CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          309 EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       309 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      .|++|++||+++++.+..+.. ...+.+++|+|+                  +..++ ++.++.|+|||+..
T Consensus       581 ~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~------------------~~~l~-~~~~~~i~iwd~~~  632 (694)
T 3dm0_A          581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN------------------RYWLC-AATEHGIKIWDLES  632 (694)
T ss_dssp             TTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS------------------SSEEE-EEETTEEEEEETTT
T ss_pred             CCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC------------------CcEEE-EEcCCCEEEEECCC
Confidence            999999999999887776654 456777888776                  44444 45567799999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.7e-35  Score=270.06  Aligned_cols=267  Identities=12%  Similarity=0.128  Sum_probs=218.2

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC------CcccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP------NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP  152 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~  152 (407)
                      +.+|.+.|++++|+|   ++|++|+.||.|++||+.+.+      ....+.+|...+       .         .     
T Consensus        12 ~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v-------~---------~-----   67 (397)
T 1sq9_A           12 GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL-------H---------H-----   67 (397)
T ss_dssp             SSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCE-------E---------E-----
T ss_pred             hhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcE-------E---------E-----
Confidence            347999999999987   699999999999999999876      333333332211       0         0     


Q ss_pred             CCCccccc-CCCC---CccccccCCCCCCCCCCCCcCc-----eeeEeec-----ccCEEEEEEC----CCCCcE-EEEE
Q 046899          153 GSAKSTAS-GGAN---SKNASKSGGNGDKPLESPSIGA-----RGKYLGH-----EDTVEDVQFC----PSSAQE-FCSV  213 (407)
Q Consensus       153 ~~~~~~~~-~~~~---~~~~~~~~~~~i~i~d~~~~~~-----~~~~~~~-----~~~v~~l~~~----~~~~~~-l~s~  213 (407)
                        +.+.+. ....   ..+++++.++.+++|++..++.     +..+..|     ...|.+++|+    |++ .+ |+++
T Consensus        68 --~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~  144 (397)
T 1sq9_A           68 --VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVAT  144 (397)
T ss_dssp             --EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEE
T ss_pred             --EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEE
Confidence              011111 0002   3577888999999999998887     8888888     5899999999    988 77 9999


Q ss_pred             eCCCcEEEEEcCC------CCCCcee-----ee-------cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 046899          214 GDDSCLILWDARS------GSTPAVK-----VE-------KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD  275 (407)
Q Consensus       214 ~~dg~i~iwd~~~------~~~~~~~-----~~-------~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~  275 (407)
                      +.||.|++||+++      +..  ..     .+       ..|...|.+++|+| ++ +|++|+.||.|++||++.    
T Consensus       145 ~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~----  216 (397)
T 1sq9_A          145 DVKGTTYIWKFHPFADESNSLT--LNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELST----  216 (397)
T ss_dssp             ETTSCEEEEEEESSSSHHHHTT--TCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTT----
T ss_pred             eCCCcEEEEeCCccccccccce--eeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCC----
Confidence            9999999999998      552  32     44       45889999999999 77 999999999999999998    


Q ss_pred             CCCCceeeecC---C---CCCEEEEEEcCCCCCEEEEeeCC---CeEEEEeCCCCCccccccc-------------CCCc
Q 046899          276 GVGSPIHKFEG---H---SAAVLCVQWSPDKSSVFGSSAED---GILNIWDHEKIGEKQDYGE-------------LKYP  333 (407)
Q Consensus       276 ~~~~~~~~~~~---h---~~~v~~v~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~~~~~~~-------------~~~~  333 (407)
                        ++++..+..   |   ...|.+++|+|++.+| ++++.|   +.|++||+++.+.+..+..             |..+
T Consensus       217 --~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l-~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (397)
T 1sq9_A          217 --LRPLYNFESQHSMINNSNSIRSVKFSPQGSLL-AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW  293 (397)
T ss_dssp             --TEEEEEEECCC---CCCCCEEEEEECSSTTEE-EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred             --CceeEEEeccccccccCCccceEEECCCCCEE-EEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc
Confidence              789999998   9   9999999999999965 699999   9999999999988888888             8899


Q ss_pred             ccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh------hc-----------
Q 046899          334 IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD------KF-----------  396 (407)
Q Consensus       334 v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~h-----------  396 (407)
                      |++++|+|+                  +..|++++.|+.|+|||+.      +++++..+.      +|           
T Consensus       294 v~~~~~~~~------------------~~~l~~~~~dg~i~iwd~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~  349 (397)
T 1sq9_A          294 VMSLSFNDS------------------GETLCSAGWDGKLRFWDVK------TKERITTLNMHCDDIEIEEDILAVDEHG  349 (397)
T ss_dssp             EEEEEECSS------------------SSEEEEEETTSEEEEEETT------TTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred             EEEEEECCC------------------CCEEEEEeCCCeEEEEEcC------CCceeEEEecccCcccchhhhhcccccc
Confidence            999999888                  8899999999999999998      677777788      77           


Q ss_pred             ----ccceeEeeccC
Q 046899          397 ----KSHIFGCDKSC  407 (407)
Q Consensus       397 ----~~~v~~~~~s~  407 (407)
                          ...|++++|++
T Consensus       350 ~~~~~~~v~~~~~~~  364 (397)
T 1sq9_A          350 DSLAEPGVFDVKFLK  364 (397)
T ss_dssp             CBCSSCCEEEEEEEC
T ss_pred             ccccCCceeEEEecc
Confidence                99999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7e-34  Score=268.00  Aligned_cols=283  Identities=15%  Similarity=0.246  Sum_probs=232.8

Q ss_pred             EEEeeCCCce-EEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------------CCcEEEEeccc
Q 046899           77 FKTIIHPGEV-NRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------------DQSVVLWSIQD  143 (407)
Q Consensus        77 ~~~~~h~~~v-~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------d~~i~~w~~~~  143 (407)
                      ..+.+|.+.| .++.  + ++++|++|+.||+|++||+.+++....+.+|...+...            |++|++||+.+
T Consensus       112 ~~l~~h~~~v~~~~~--~-~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  188 (445)
T 2ovr_B          112 KVLKGHDDHVITCLQ--F-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET  188 (445)
T ss_dssp             EEEECSTTSCEEEEE--E-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             EEecccCCCcEEEEE--E-cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCc
Confidence            3455899875 5554  4 57899999999999999999998888777776554332            99999999987


Q ss_pred             cccc--cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEE
Q 046899          144 HVSA--LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLIL  221 (407)
Q Consensus       144 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~i  221 (407)
                      +...  +..+...+..+..  ....+++++.++.+++||..+++.+..+.+|...|.+++|  ++ .++++|+.||.|++
T Consensus       189 ~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          189 GECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKV  263 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEE
T ss_pred             CcEEEEECCCCCcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEE
Confidence            7443  3334433333332  2356888999999999999999999999999999999999  44 68999999999999


Q ss_pred             EEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC
Q 046899          222 WDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       222 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  301 (407)
                      ||+++++  ....+..|...|.+++|   ++.++++|+.||.|++||+++      ++++..+.+|...+.++.++  +.
T Consensus       264 wd~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~v~~~~~~--~~  330 (445)
T 2ovr_B          264 WDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQSLTSGMELK--DN  330 (445)
T ss_dssp             EEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT------CCEEEEECCCCSCEEEEEEE--TT
T ss_pred             EECCCCc--EeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCC------CCEEEEEcCCcccEEEEEEe--CC
Confidence            9999887  67788899999999999   568999999999999999999      89999999999999999885  44


Q ss_pred             CEEEEeeCCCeEEEEeCCCCCccccccc---CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          302 SVFGSSAEDGILNIWDHEKIGEKQDYGE---LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                       ++++|+.||.|++||+++++.+..+..   |..+|++++|+                    +..+++++.||.|+|||+
T Consensus       331 -~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          331 -ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--------------------KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             -EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--------------------SSEEEEEETTSEEEEEET
T ss_pred             -EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--------------------CCEEEEEeCCCeEEEEEC
Confidence             457999999999999999888877765   56666555552                    567999999999999999


Q ss_pred             cccccCChHHHHHHH-----hhcccceeEeeccC
Q 046899          379 IDLIYRPEEEVLAEL-----DKFKSHIFGCDKSC  407 (407)
Q Consensus       379 ~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s~  407 (407)
                      .      +++.+..+     .+|.+.|++++||+
T Consensus       390 ~------~~~~~~~~~~~~~~~~~~~v~~~~~s~  417 (445)
T 2ovr_B          390 K------TGEFIRNLVTLESGGSGGVVWRIRASN  417 (445)
T ss_dssp             T------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             C------CCceeeeeeccccCCCCceEEEEEecC
Confidence            8      66666666     58899999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.6e-34  Score=260.93  Aligned_cols=274  Identities=16%  Similarity=0.247  Sum_probs=213.8

Q ss_pred             eCCCceEEEEEeCC---CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           81 IHPGEVNRIRELPQ---NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        81 ~h~~~v~~l~~~~~---~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      +|.++|++++|+|.   ...++++++.++.|++||+.++.....+..+.....  ++.+.-                ..+
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~--~~~v~~----------------~~~   77 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADA--DENFYT----------------CAW   77 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCT--TCCEEE----------------EEE
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCC--CCcEEE----------------EEe
Confidence            69999999999983   344555666667999999997766555443322100  111110                111


Q ss_pred             cccCCC-CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCCCceeee
Q 046899          158 TASGGA-NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       158 ~~~~~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  235 (407)
                      .+.+.. ...+++++.++.+++||..+++.+..+.+|...|.+++|+| ++ .+|++++.||.|++||+++++  ....+
T Consensus        78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~  154 (366)
T 3k26_A           78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDT--LVAIF  154 (366)
T ss_dssp             EECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTE--EEEEE
T ss_pred             ccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCe--EEEEe
Confidence            112111 23578899999999999999999999999999999999999 66 899999999999999999887  45555


Q ss_pred             ---cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee----------------------------e
Q 046899          236 ---KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK----------------------------F  284 (407)
Q Consensus       236 ---~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~----------------------------~  284 (407)
                         ..|...|.+++|+| ++++|++++.||.|++||++.      ++.+..                            .
T Consensus       155 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINS------KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             CSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCS------HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             cccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCC------CccccccceeEEecCCCCcccccceeeccCccccc
Confidence               68999999999999 899999999999999999987      443333                            3


Q ss_pred             cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc--------------ccccccCCCcccCCCCcCcchhccccc
Q 046899          285 EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE--------------KQDYGELKYPIIHPAYSSDMLDIETKL  350 (407)
Q Consensus       285 ~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--------------~~~~~~~~~~v~~~~~s~d~~~~~~~~  350 (407)
                      ..|...|.+++|+  +. ++++++.|+.|++||+++...              +..+..|..+|++++|+|+.       
T Consensus       228 ~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------  297 (366)
T 3k26_A          228 DIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF-------  297 (366)
T ss_dssp             SSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT-------
T ss_pred             cCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC-------
Confidence            3499999999998  55 457999999999999988755              55667788889999998761       


Q ss_pred             eeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHH----HHhhc--ccceeEeeccC
Q 046899          351 LTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA----ELDKF--KSHIFGCDKSC  407 (407)
Q Consensus       351 ~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~h--~~~v~~~~~s~  407 (407)
                               .+..|++++.|+.|+|||+.      .++++.    .+.+|  ...|++++||+
T Consensus       298 ---------~~~~l~~~~~dg~i~vwd~~------~~~~~~~~~~~~~~~~~~~~v~~~~~s~  345 (366)
T 3k26_A          298 ---------WQKMLALGNQVGKLYVWDLE------VEDPHKAKCTTLTHHKCGAAIRQTSFSR  345 (366)
T ss_dssp             ---------TSSEEEEECTTSCEEEEECC------SSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred             ---------CCcEEEEEecCCcEEEEECC------CCCCccccceEEcccccCCceEEEEeCC
Confidence                     26689999999999999998      455444    67777  79999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.7e-34  Score=277.52  Aligned_cols=337  Identities=12%  Similarity=0.082  Sum_probs=259.5

Q ss_pred             hhhhhhhccCceEEEeeeeccc-CCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEe-----eCC
Q 046899           14 DRYTQWKSLVPVLYDWLANHNL-VWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTI-----IHP   83 (407)
Q Consensus        14 ~~~~~w~~~~~~~y~~l~~~~~-~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~h~   83 (407)
                      ..+.+|+.........+..+.. .-+..++.|.|+    +++++.++.+++|-         .........+     +|.
T Consensus       183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd---------~~~~~~~~~~~~~~~~~~  253 (615)
T 1pgu_A          183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD---------GKSGEFLKYIEDDQEPVQ  253 (615)
T ss_dssp             TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE---------TTTCCEEEECCBTTBCCC
T ss_pred             CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE---------CCCCCEeEEecccccccC
Confidence            3456676555444333332222 115667889876    77889999999992         1222334444     799


Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCC-----------------CCCCcEEEEecccccc
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHP-----------------DLDQSVVLWSIQDHVS  146 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~~d~~i~~w~~~~~~~  146 (407)
                      +.|.+++|+  ++++|++++.||.|++||+.+++....+..+.....                 ..++.+.+|++.....
T Consensus       254 ~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  331 (615)
T 1pgu_A          254 GGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV  331 (615)
T ss_dssp             SCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred             CceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence            999999998  788999999999999999998876655544421111                 0189999999987533


Q ss_pred             --ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 046899          147 --ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDA  224 (407)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  224 (407)
                        .+..+...+..+.. ..   +++++.++.+++|+..   .+.  .+|...|.+++| +.+ ..|++++.|+.|++||+
T Consensus       332 ~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~---~~~--~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~  400 (615)
T 1pgu_A          332 LKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS---SMH--QDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGI  400 (615)
T ss_dssp             EEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT---EEE--CCCCSCEEEEEC-CST-TCCEEEETTTEEEETTE
T ss_pred             EEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch---hhc--CcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEc
Confidence              33344444444444 32   8899999999999998   333  689999999999 445 57999999999999998


Q ss_pred             CCCCC--------------------------------CceeeecccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCC
Q 046899          225 RSGST--------------------------------PAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRK  271 (407)
Q Consensus       225 ~~~~~--------------------------------~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~  271 (407)
                      ++...                                .....+ .+...+.+++|+   +.++++++. ||.|++||+..
T Consensus       401 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~  476 (615)
T 1pgu_A          401 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSD  476 (615)
T ss_dssp             EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC---SSEEEEEETTTSCEEEEETTE
T ss_pred             ccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc---CCEEEEeecCCCeEEEEECCC
Confidence            64220                                022222 477889999998   679999999 99999999997


Q ss_pred             CCCCCCCCce-eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcC--------
Q 046899          272 LTSDGVGSPI-HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSS--------  341 (407)
Q Consensus       272 ~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~--------  341 (407)
                            ++.. ..+..|...|++++|+|++++| ++++.|+.|++||+.+++.+..+.+ |..+|++++|+|        
T Consensus       477 ------~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  549 (615)
T 1pgu_A          477 ------LEVSFDLKTPLRAKPSYISISPSETYI-AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  549 (615)
T ss_dssp             ------EEEEEECSSCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             ------ccccccccCCccCceEEEEECCCCCEE-EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence                  4444 6778899999999999999965 7999999999999999999888888 999999999999        


Q ss_pred             --cchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChH-HHHHHHhhcccceeEeeccC
Q 046899          342 --DMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEE-EVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       342 --d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~  407 (407)
                        +                  +..|++++.|++|+|||+.      ++ +++..+.+|...|++++||+
T Consensus       550 ~~~------------------~~~l~~~~~dg~i~iw~~~------~~~~~~~~~~~h~~~v~~l~~s~  594 (615)
T 1pgu_A          550 EIE------------------EDLVATGSLDTNIFIYSVK------RPMKIIKALNAHKDGVNNLLWET  594 (615)
T ss_dssp             CCS------------------CCEEEEEETTSCEEEEESS------CTTCCEEETTSSTTCEEEEEEEE
T ss_pred             ccC------------------CCEEEEEcCCCcEEEEECC------CCceechhhhcCccceEEEEEcC
Confidence              6                  8899999999999999998      44 67778999999999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=259.88  Aligned_cols=285  Identities=14%  Similarity=0.151  Sum_probs=216.8

Q ss_pred             CcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeC---CCcEEEEeCcCCCCccccc-CcCCCCCCCCCcEEEEecccccc
Q 046899           71 SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTD---SPDVLIWDVEAQPNRHAVL-GAADSHPDLDQSVVLWSIQDHVS  146 (407)
Q Consensus        71 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~~~~~~~~-~~~~~~~~~d~~i~~w~~~~~~~  146 (407)
                      .|.+......+|.+.|++++|+|++..++++|+.   ||.|++||+.+++...... +|..                ...
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~----------------~v~   69 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK----------------PIK   69 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS----------------CEE
T ss_pred             hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC----------------cEE
Confidence            3445555556799999999999955577788877   9999999998765432211 1111                111


Q ss_pred             ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC-ceeeEeecccCEEEEEE------CCCCCcEEEEEeCCCcE
Q 046899          147 ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG-ARGKYLGHEDTVEDVQF------CPSSAQEFCSVGDDSCL  219 (407)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~v~~l~~------~~~~~~~l~s~~~dg~i  219 (407)
                      .+.+.+       .+.....+++++.++.+++||...++ .+..+.+|...|.+++|      +|++ .+|++++.||.|
T Consensus        70 ~~~~~~-------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i  141 (357)
T 3i2n_A           70 CGTFGA-------TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTV  141 (357)
T ss_dssp             EEECTT-------CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCE
T ss_pred             EEEEcC-------CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeE
Confidence            111111       21113568889999999999999988 88899999999999954      6777 799999999999


Q ss_pred             EEEEcCCCCCCceeeecccCc----ceEEEE----ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCE
Q 046899          220 ILWDARSGSTPAVKVEKAHNA----DIHCVD----WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAV  291 (407)
Q Consensus       220 ~iwd~~~~~~~~~~~~~~~~~----~v~~l~----~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v  291 (407)
                      ++||++++..+ ...+..|..    .+.+++    |+| ++++|++|+.||.|++||++.      ++... ...|...|
T Consensus       142 ~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~~~~~-~~~~~~~v  212 (357)
T 3i2n_A          142 KVWDPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRN------MALRW-ETNIKNGV  212 (357)
T ss_dssp             EEECTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTT------TEEEE-EEECSSCE
T ss_pred             EEEeCCCCCCc-ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECcc------Cceee-ecCCCCce
Confidence            99999987632 444444443    788998    778 899999999999999999998      55544 45688999


Q ss_pred             EEEEEcC---CCCCEEEEeeCCCeEEEEeCCCCCcccccc-----cCCCcccCCCCcCcchhccccceeeeeEeeCccc-
Q 046899          292 LCVQWSP---DKSSVFGSSAEDGILNIWDHEKIGEKQDYG-----ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR-  362 (407)
Q Consensus       292 ~~v~~~~---~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~-  362 (407)
                      .+++|+|   ++.++ ++++.||.|++||+++.+....+.     +|..+|++++|+|+                  +. 
T Consensus       213 ~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~  273 (357)
T 3i2n_A          213 CSLEFDRKDISMNKL-VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ------------------NRE  273 (357)
T ss_dssp             EEEEESCSSSSCCEE-EEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT------------------EEE
T ss_pred             EEEEcCCCCCCCCEE-EEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC------------------CCc
Confidence            9999999   88855 699999999999999877776665     88999999999888                  55 


Q ss_pred             eeeeEEEeeeEEEeeccccccCC-------------hHHHHHHHhhcccceeEeeccC
Q 046899          363 LLVCLTMVKVLEIWRMIDLIYRP-------------EEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       363 ~i~~~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .+++++.|+.|+|||+.......             ..+++..+.+|.+.|++++||+
T Consensus       274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  331 (357)
T 3i2n_A          274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP  331 (357)
T ss_dssp             EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred             EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence            79999999999999997422110             1135667889999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.4e-33  Score=260.83  Aligned_cols=281  Identities=19%  Similarity=0.303  Sum_probs=218.0

Q ss_pred             EeeeecccCCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEee
Q 046899           28 DWLANHNLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHT  103 (407)
Q Consensus        28 ~~l~~~~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~  103 (407)
                      +-+......|..-.+.+.|.    +++++.++.+++|   ++....... .......+|.+.|++++|+|.++++|++|+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~---~~~~~~~~~-~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s  101 (402)
T 2aq5_A           26 EDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVL---PLGKTGRVD-KNVPLVCGHTAPVLDIAWCPHNDNVIASGS  101 (402)
T ss_dssp             ESCCBCCCCCSSCSEEECSSEEEEEBCCSSSCCEEEE---ETTCCEECC-TTCCCBCCCSSCEEEEEECTTCTTEEEEEE
T ss_pred             ecceeecCccCCCcEEECCCeEEEEEEEcCCCEEEEE---ECccCCCCC-CCCceEecCCCCEEEEEeCCCCCCEEEEEe
Confidence            33334455677666777774    4467889999999   332221110 112223479999999999997788999999


Q ss_pred             CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899          104 DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS  183 (407)
Q Consensus       104 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~  183 (407)
                      .||+|++||+.++.....                                                             .
T Consensus       102 ~dg~v~vw~~~~~~~~~~-------------------------------------------------------------~  120 (402)
T 2aq5_A          102 EDCTVMVWEIPDGGLVLP-------------------------------------------------------------L  120 (402)
T ss_dssp             TTSEEEEEECCTTCCSSC-------------------------------------------------------------B
T ss_pred             CCCeEEEEEccCCCCccc-------------------------------------------------------------c
Confidence            999999999986532211                                                             1


Q ss_pred             cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cccCcceEEEEecCCCCCEEEEEeCC
Q 046899          184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KAHNADIHCVDWNPHDVNLILTGSAD  261 (407)
Q Consensus       184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~tg~~d  261 (407)
                      .+++..+.+|...|.+++|+|++.++|++++.||.|++||+++++  ....+  ..|...|.+++|+| ++++|++++.|
T Consensus       121 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  197 (402)
T 2aq5_A          121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRD  197 (402)
T ss_dssp             CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECT-TSSCEEEEETT
T ss_pred             CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECC-CCCEEEEEecC
Confidence            134567778999999999999986799999999999999999887  56666  78999999999999 99999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeee-cCCCCC-EEEEEEcCCCCCEEEEe---eCCCeEEEEeCCCCCccc-ccc-cCCCcc
Q 046899          262 NSIHMFDRRKLTSDGVGSPIHKF-EGHSAA-VLCVQWSPDKSSVFGSS---AEDGILNIWDHEKIGEKQ-DYG-ELKYPI  334 (407)
Q Consensus       262 g~i~vwd~~~~~~~~~~~~~~~~-~~h~~~-v~~v~~~~~~~~ll~s~---~~d~~i~vwd~~~~~~~~-~~~-~~~~~v  334 (407)
                      |.|++||+++      ++.+..+ ..|.+. +.+++|+|++.+ |++|   +.|+.|++||+++.+... ... .+...+
T Consensus       198 ~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  270 (402)
T 2aq5_A          198 KRVRVIEPRK------GTVVAEKDRPHEGTRPVHAVFVSEGKI-LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV  270 (402)
T ss_dssp             SEEEEEETTT------TEEEEEEECSSCSSSCCEEEECSTTEE-EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred             CcEEEEeCCC------CceeeeeccCCCCCcceEEEEcCCCcE-EEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence            9999999998      7888888 788776 999999999984 5688   789999999999876532 222 456667


Q ss_pred             cCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEeeccccccCChHHH-HHHHhhc--ccceeEeeccC
Q 046899          335 IHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIWRMIDLIYRPEEEV-LAELDKF--KSHIFGCDKSC  407 (407)
Q Consensus       335 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~h--~~~v~~~~~s~  407 (407)
                      ..++|+|+                  +..++ +++.|+.|++||+.      +++. +..+.+|  ...|.+++|++
T Consensus       271 ~~~~~s~~------------------~~~l~~~g~~dg~i~i~d~~------~~~~~~~~l~~~~~~~~v~~~~~sp  323 (402)
T 2aq5_A          271 LLPFFDPD------------------TNIVYLCGKGDSSIRYFEIT------SEAPFLHYLSMFSSKESQRGMGYMP  323 (402)
T ss_dssp             EEEEEETT------------------TTEEEEEETTCSCEEEEEEC------SSTTCEEEEEEECCSSCCSEEEECC
T ss_pred             eEEEEcCC------------------CCEEEEEEcCCCeEEEEEec------CCCcceEeecccccCCcccceEEec
Confidence            78888877                  66665 56679999999998      4443 4455555  48899999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=245.30  Aligned_cols=279  Identities=16%  Similarity=0.308  Sum_probs=218.1

Q ss_pred             EEEEeec-ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc
Q 046899           41 SCRWGPQ-LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR  119 (407)
Q Consensus        41 s~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~  119 (407)
                      .++|.+. +...+.|++++||-   .  + ...........+|...|++++|+| ++++||+|+.||+|++||+.+++..
T Consensus        30 ~l~WS~~~~lAvg~D~tV~iWd---~--~-tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           30 LVDWSSGNVLAVALDNSVYLWS---A--S-SGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CEEECTTSEEEEEETTEEEEEE---T--T-TCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEECCCCEEEEEeCCEEEEEE---C--C-CCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeE
Confidence            3678763 33445689999992   1  1 122233444457889999999999 8899999999999999999998877


Q ss_pred             ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCc-CceeeEeecccCEE
Q 046899          120 HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSI-GARGKYLGHEDTVE  198 (407)
Q Consensus       120 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~  198 (407)
                      ..+.+|...       +..+...                     ...+++++.++.+++|+.... ..+..+.+|...+.
T Consensus       103 ~~~~~h~~~-------~~~~~~~---------------------~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (318)
T 4ggc_A          103 RNMTSHSAR-------VGSLSWN---------------------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC  154 (318)
T ss_dssp             EEEECCSSC-------EEEEEEE---------------------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             EEecCccce-------EEEeecC---------------------CCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence            776665432       1111111                     123666778888888877654 45567788999999


Q ss_pred             EEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecCCCCCEE--EEEeCCCcEEEEeCCCCCC
Q 046899          199 DVQFCPSSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNPHDVNLI--LTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l--~tg~~dg~i~vwd~~~~~~  274 (407)
                      ++.+++++ .+|++++.|+.|++||+++++..  .......+...|.++.++|.+...+  ++++.++.|++||.+.   
T Consensus       155 ~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~---  230 (318)
T 4ggc_A          155 GLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---  230 (318)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT---
T ss_pred             EEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc---
Confidence            99999999 89999999999999999986521  2345567788999999999666655  4667889999999988   


Q ss_pred             CCCCCceeeecCCCCCEEEEEEcCCCCCEEEE-eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceee
Q 046899          275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS-SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS  353 (407)
Q Consensus       275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  353 (407)
                         ....... .+...+..+.|+|++..++++ |+.|+.|++||+++++.+..+.+|..+|++++|+||           
T Consensus       231 ---~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd-----------  295 (318)
T 4ggc_A          231 ---GACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD-----------  295 (318)
T ss_dssp             ---CCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------
T ss_pred             ---ccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC-----------
Confidence               5555444 467789999999999977533 347999999999999999999999999999999999           


Q ss_pred             eeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          354 IGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       354 ~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                             +..|++++.|++|+|||+.+
T Consensus       296 -------g~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          296 -------GATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             -------SSCEEEEETTTEEEEECCSC
T ss_pred             -------CCEEEEEecCCeEEEEECCC
Confidence                   88999999999999999973

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-33  Score=256.53  Aligned_cols=252  Identities=18%  Similarity=0.207  Sum_probs=203.1

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC--CCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA--QPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      +.+|.+.|++++|+| ++++||+|+.||.|++||+..  ......+.+|...       |                   .
T Consensus         7 ~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~-------v-------------------~   59 (379)
T 3jrp_A            7 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP-------V-------------------W   59 (379)
T ss_dssp             EEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------E-------------------E
T ss_pred             ecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCc-------E-------------------E
Confidence            348999999999999 889999999999999999973  3333344444322       1                   1


Q ss_pred             ccccCC--CCCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          157 STASGG--ANSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       157 ~~~~~~--~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      .+....  ....+++++.|+.+++||+..++  .+..+..|...|.+++|+|+  + .+|++++.|+.|++||+++....
T Consensus        60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~  138 (379)
T 3jrp_A           60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT  138 (379)
T ss_dssp             EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCC
T ss_pred             EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCce
Confidence            111111  13457889999999999998886  67777889999999999998  7 89999999999999999988544


Q ss_pred             ceeeecccCcceEEEEecCC------------CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899          231 AVKVEKAHNADIHCVDWNPH------------DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP  298 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~------------~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  298 (407)
                      ....+..|...|.+++|+|.            ++.+|++|+.||.|++||++.....  ..+...+.+|...|.+++|+|
T Consensus       139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp  216 (379)
T 3jrp_A          139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSP  216 (379)
T ss_dssp             CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECC
T ss_pred             eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECC
Confidence            55667789999999999995            4899999999999999999872210  124567888999999999999


Q ss_pred             C---CCCEEEEeeCCCeEEEEeCCCCC-----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe
Q 046899          299 D---KSSVFGSSAEDGILNIWDHEKIG-----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV  370 (407)
Q Consensus       299 ~---~~~ll~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d  370 (407)
                      +   +. +|++++.||.|++||++...     .......+..+|++++|+|+                  +..|++++.|
T Consensus       217 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------g~~l~~~~~d  277 (379)
T 3jrp_A          217 TVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS------------------GNVLALSGGD  277 (379)
T ss_dssp             CCSSSE-EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS------------------SCCEEEEESS
T ss_pred             CCCCCC-eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC------------------CCEEEEecCC
Confidence            9   66 55799999999999999864     23334457788899999988                  8899999999


Q ss_pred             eeEEEeecc
Q 046899          371 KVLEIWRMI  379 (407)
Q Consensus       371 ~~i~iwd~~  379 (407)
                      +.|+||++.
T Consensus       278 g~i~iw~~~  286 (379)
T 3jrp_A          278 NKVTLWKEN  286 (379)
T ss_dssp             SSEEEEEEE
T ss_pred             CcEEEEeCC
Confidence            999999987

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-32  Score=248.97  Aligned_cols=272  Identities=13%  Similarity=0.185  Sum_probs=205.1

Q ss_pred             ccCCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899           34 NLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL  109 (407)
Q Consensus        34 ~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~  109 (407)
                      ++.-+..++.|.|+    ++|++.|+.+++|   ++.............+.+|.+.|.+++|+| ++++|++|+.|+.|+
T Consensus        36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vW---d~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~  111 (340)
T 4aow_A           36 GHNGWVTQIATTPQFPDMILSASRDKTIIMW---KLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLR  111 (340)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSCEEEE---EECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred             CccCCEEEEEEeCCCCCEEEEEcCCCeEEEE---ECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccce
Confidence            35567888899873    7899999999999   333332233333445568999999999999 899999999999999


Q ss_pred             EEeCcCCCCcccccCcCCCC------C--------CCCCcEEEEecccccccc---ccCCCCCcccccC--CCCCccccc
Q 046899          110 IWDVEAQPNRHAVLGAADSH------P--------DLDQSVVLWSIQDHVSAL---AAEPGSAKSTASG--GANSKNASK  170 (407)
Q Consensus       110 vwd~~~~~~~~~~~~~~~~~------~--------~~d~~i~~w~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~  170 (407)
                      +|+............+....      +        ..|+.+++|++.......   ..+...+......  .....++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~  191 (340)
T 4aow_A          112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC  191 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence            99998765443332221111      0        118999999987653322   2222232222222  223456778


Q ss_pred             cCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC
Q 046899          171 SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH  250 (407)
Q Consensus       171 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~  250 (407)
                      +.++.+++||..+++.+..+.+|...|++++|+|++ .+|++|+.||.|++||+++.+  ....+ .+...+.++.|+| 
T Consensus       192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~-  266 (340)
T 4aow_A          192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGK--HLYTL-DGGDIINALCFSP-  266 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE--EEEEE-ECSSCEEEEEECS-
T ss_pred             cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCc--eeeee-cCCceEEeeecCC-
Confidence            899999999999999999999999999999999999 899999999999999999877  45554 4557899999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee---------cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF---------EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      ++. +++++.|+.|++||++.      ...+..+         .+|...|++++|+|++++| ++|+.||.|+|||++++
T Consensus       267 ~~~-~~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          267 NRY-WLCAATGPSIKIWDLEG------KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             SSS-EEEEEETTEEEEEETTT------TEEEEEECCC-------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEEC-
T ss_pred             CCc-eeeccCCCEEEEEECCC------CeEEEeccccceeeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCCCc
Confidence            665 45666799999999987      4444443         4688999999999999965 69999999999999987


Q ss_pred             C
Q 046899          322 G  322 (407)
Q Consensus       322 ~  322 (407)
                      +
T Consensus       339 t  339 (340)
T 4aow_A          339 T  339 (340)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.8e-34  Score=262.00  Aligned_cols=249  Identities=12%  Similarity=0.119  Sum_probs=191.4

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC--CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ--PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      .|.++|++++|+| ++++||+|+.|+.|++||+.++  +....+.+|...       |                   ..+
T Consensus         9 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~-------v-------------------~~~   61 (377)
T 3dwl_C            9 ILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKI-------V-------------------TCV   61 (377)
T ss_dssp             ECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSC-------E-------------------EEE
T ss_pred             cCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCce-------E-------------------EEE
Confidence            4778999999999 8899999999999999999976  455555554332       1                   111


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcC---ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-Cceee
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIG---ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-PAVKV  234 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~  234 (407)
                      ........+++++.|+.+++||+..++   ....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++. .....
T Consensus        62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             EECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeE
Confidence            122223458889999999999998877   667777899999999999998 7999999999999999998752 12455


Q ss_pred             ecc-cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC------------CCCceeeecCCCCCEEEEEEcCCCC
Q 046899          235 EKA-HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG------------VGSPIHKFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       235 ~~~-~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~------------~~~~~~~~~~h~~~v~~v~~~~~~~  301 (407)
                      +.. |...|.+++|+| ++++|++|+.||.|++||++......            .++++..+ .|...|++++|+|+++
T Consensus       141 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             ECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred             eecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence            556 999999999999 89999999999999999986321100            03456666 8999999999999999


Q ss_pred             CEEEEeeCCCeEEEEeCCCCCc----ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899          302 SVFGSSAEDGILNIWDHEKIGE----KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR  377 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd  377 (407)
                      +| ++++.|+.|++||+++++.    +..+..|..+|++++|+|+                  +..|++++.++.+ +|+
T Consensus       219 ~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------~~~l~~~~~~~~~-~~~  278 (377)
T 3dwl_C          219 AL-AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE------------------SAIVAAGYNYSPI-LLQ  278 (377)
T ss_dssp             CE-EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET------------------TEEEEEESSSSEE-EEC
T ss_pred             EE-EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC------------------CCEEEEEcCCcEE-EEE
Confidence            65 6999999999999999888    7888899999999999888                  7788888766555 666


Q ss_pred             cc
Q 046899          378 MI  379 (407)
Q Consensus       378 ~~  379 (407)
                      ..
T Consensus       279 ~~  280 (377)
T 3dwl_C          279 GN  280 (377)
T ss_dssp             CC
T ss_pred             eC
Confidence            64

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.3e-33  Score=256.61  Aligned_cols=282  Identities=15%  Similarity=0.138  Sum_probs=213.6

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccccc-------------CcCCCC------C-CC-------
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL-------------GAADSH------P-DL-------  132 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~-------------~~~~~~------~-~~-------  132 (407)
                      .+|.+.|++++|+|.++++|++|+.||.|++||+.+......+.             +|...+      + +.       
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            36999999999999778899999999999999999876554432             232221      1 11       


Q ss_pred             -CCcEEEEecccccccccc-CCCC---CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC
Q 046899          133 -DQSVVLWSIQDHVSALAA-EPGS---AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA  207 (407)
Q Consensus       133 -d~~i~~w~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~  207 (407)
                       |+.+++||+.+....... ....   ..+.+.+.....+++++.++.+++||+.+++.+..+.+|...|.+++|+|++.
T Consensus       120 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  199 (408)
T 4a11_B          120 FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD  199 (408)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred             CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence             899999999876443222 2222   23333444445788899999999999999999999999999999999999995


Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCceeee---------------cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCC
Q 046899          208 QEFCSVGDDSCLILWDARSGSTPAVKVE---------------KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL  272 (407)
Q Consensus       208 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  272 (407)
                      .+|++++.||.|++||+++.... ...+               ..|...|.+++|+| ++++|++++.||.|++||+++ 
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~-  276 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSN-  276 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-
T ss_pred             cEEEEEcCCCcEEEEECCCCCcc-cccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCC-
Confidence            57999999999999999876532 2222               57889999999999 999999999999999999998 


Q ss_pred             CCCCCCCceeeecCC-----CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcc
Q 046899          273 TSDGVGSPIHKFEGH-----SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIE  347 (407)
Q Consensus       273 ~~~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~  347 (407)
                           ++....+..+     ...+........+..+ ++++.|+.|++||+.+++.+..+.+|..+|++++|+|+     
T Consensus       277 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~-----  345 (408)
T 4a11_B          277 -----GENTLVNYGKVCNNSKKGLKFTVSCGCSSEF-VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN-----  345 (408)
T ss_dssp             -----CCBCCCCCCCCCCCCSSCCCCEECCSSSSCE-EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT-----
T ss_pred             -----CccceeccccccccccccceeEEecCCCceE-EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC-----
Confidence                 5544443322     1122222222333434 57788999999999999999999999999999999998     


Q ss_pred             ccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          348 TKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       348 ~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                                   +..|++++.||.|+|||+.      +++++....
T Consensus       346 -------------~~~l~s~~~dg~i~iw~~~------~~~~~~~~~  373 (408)
T 4a11_B          346 -------------FQELYSGSRDCNILAWVPS------LYEPVPDDD  373 (408)
T ss_dssp             -------------TTEEEEEETTSCEEEEEEC------C--------
T ss_pred             -------------CCEEEEECCCCeEEEEeCC------CCCccCCCC
Confidence                         8899999999999999998      555554443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.7e-32  Score=256.40  Aligned_cols=288  Identities=19%  Similarity=0.319  Sum_probs=224.9

Q ss_pred             hhhhhccCceEEEeeeecccCCCeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC
Q 046899           16 YTQWKSLVPVLYDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ   94 (407)
Q Consensus        16 ~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~   94 (407)
                      .++|+.....+..+.......-+...+++.. .+++++.|+.+++|..   .  .   ........+|.+.|.+++|   
T Consensus       113 ~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~---~--~---~~~~~~~~~h~~~v~~l~~---  181 (435)
T 1p22_A          113 ESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK---N--T---LECKRILTGHTGSVLCLQY---  181 (435)
T ss_dssp             HHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEES---S--S---CCEEEEECCCSSCEEEEEC---
T ss_pred             HhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeC---C--C---CeEEEEEcCCCCcEEEEEE---
Confidence            4677766544333333333444555666644 4889999999999921   1  1   1123344579999999997   


Q ss_pred             CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899           95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN  174 (407)
Q Consensus        95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (407)
                      ++++|++|+.||+|++||+.+++....+.+|...       +.-....                     ...+++++.++
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-------v~~l~~~---------------------~~~l~s~s~dg  233 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-------VLHLRFN---------------------NGMMVTCSKDR  233 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-------EEEEECC---------------------TTEEEEEETTS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc-------EEEEEEc---------------------CCEEEEeeCCC
Confidence            5679999999999999999988777666555332       1111110                     13578889999


Q ss_pred             CCCCCCCCCcCce---eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899          175 GDKPLESPSIGAR---GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       175 ~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      .+++||..+++..   ..+.+|...|.+++|  ++ .++++|+.||.|++||+++++  ....+..|...|.++.++   
T Consensus       234 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~---  305 (435)
T 1p22_A          234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---  305 (435)
T ss_dssp             CEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---
T ss_pred             cEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEeC---
Confidence            9999999887766   667789999999999  44 789999999999999999988  678888999999999995   


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC---------
Q 046899          252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG---------  322 (407)
Q Consensus       252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~---------  322 (407)
                      ++++++|+.||.|++||+++      ++++.++.+|...|.+++|  ++.+ +++|+.||.|++||+.+..         
T Consensus       306 ~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~--~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~  376 (435)
T 1p22_A          306 DRLVVSGSSDNTIRLWDIEC------GACLRVLEGHEELVRCIRF--DNKR-IVSGAYDGKIKVWDLVAALDPRAPAGTL  376 (435)
T ss_dssp             TTEEEEEETTSCEEEEETTT------CCEEEEECCCSSCEEEEEC--CSSE-EEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred             CCEEEEEeCCCeEEEEECCC------CCEEEEEeCCcCcEEEEEe--cCCE-EEEEeCCCcEEEEECCCCCCccccccch
Confidence            47999999999999999999      8999999999999999999  5564 5799999999999998765         


Q ss_pred             cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          323 EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       323 ~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .+..+.+|..+|++++|  +                  +..|++++.||+|+|||+.
T Consensus       377 ~~~~~~~h~~~v~~l~~--~------------------~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          377 CLRTLVEHSGRVFRLQF--D------------------EFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EEEEECCCSSCCCCEEE--C------------------SSCEEECCSSSEEEEEC--
T ss_pred             heeeccCCCCCeEEEEe--C------------------CCEEEEEeCCCEEEEEECC
Confidence            56677788888887776  3                  6679999999999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-33  Score=258.04  Aligned_cols=239  Identities=12%  Similarity=0.112  Sum_probs=175.5

Q ss_pred             CCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeC
Q 046899           37 WPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDV  113 (407)
Q Consensus        37 ~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  113 (407)
                      -|..++.|.|+   +++++.++.+++|-..     . ..........+|.+.|++++|+| ++++|++|+.||+|++||+
T Consensus        12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~-----~-~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           12 KPSYEHAFNSQRTEFVTTTATNQVELYEQD-----G-NGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             SCCSCCEECSSSSEEECCCSSSCBCEEEEE-----T-TEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC--
T ss_pred             CcEEEEEECCCCCEEEEecCCCEEEEEEcc-----C-CceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEc
Confidence            36777888874   8889999999999322     1 10122333447999999999999 7899999999999999999


Q ss_pred             cCCC---CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC---ce
Q 046899          114 EAQP---NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG---AR  187 (407)
Q Consensus       114 ~~~~---~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~  187 (407)
                      .++.   ....+..|...                          +..+........+++++.++.+++||+..++   ..
T Consensus        85 ~~~~~~~~~~~~~~~~~~--------------------------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  138 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRA--------------------------ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS  138 (377)
T ss_dssp             ----CCCCEEECCCCSSC--------------------------EEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred             CCCCceeeeeEecccCCc--------------------------eEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence            8875   22222222211                          1111122233468889999999999998877   46


Q ss_pred             eeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC----------------CCceeeecccCcceEEEEecCC
Q 046899          188 GKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS----------------TPAVKVEKAHNADIHCVDWNPH  250 (407)
Q Consensus       188 ~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~l~~~~~  250 (407)
                      ..+.. |...|.+++|+|++ .+|++++.|+.|++||++...                ......+ .|...|.+++|+| 
T Consensus       139 ~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-  215 (377)
T 3dwl_C          139 KHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-  215 (377)
T ss_dssp             EEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-
T ss_pred             eEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-
Confidence            77777 99999999999998 899999999999999996322                1133444 8999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCc----eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSP----IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~----~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ++++|++|+.||.|++||++.      ++.    +..+.+|..+|.+++|+|++++ |++|+.|+.+ +|+..
T Consensus       216 ~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          216 SGNALAYAGHDSSVTIAYPSA------PEQPPRALITVKLSQLPLRSLLWANESAI-VAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TSSCEEEEETTTEEC-CEECS------TTSCEEECCCEECSSSCEEEEEEEETTEE-EEEESSSSEE-EECCC
T ss_pred             CCCEEEEEeCCCcEEEEECCC------CCCcceeeEeecCCCCceEEEEEcCCCCE-EEEEcCCcEE-EEEeC
Confidence            899999999999999999998      666    7888999999999999999985 4688766655 77665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-34  Score=272.06  Aligned_cols=266  Identities=10%  Similarity=-0.004  Sum_probs=192.9

Q ss_pred             eEEEeeCCCceEEEEEeCCC-C-------eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccc
Q 046899           76 KFKTIIHPGEVNRIRELPQN-S-------KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSA  147 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~-~-------~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~  147 (407)
                      ....+.+.+.|.+|+|+|.. +       ++||+|+.++..   +. .......+     .....|++|++|++......
T Consensus       126 ~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~---~~-~~~~~~~l-----aS~s~D~tI~iWd~~~~~~~  196 (524)
T 2j04_B          126 RGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD---EP-LNEHLEMF-----DKEKHSSCIQIFKMNTSTLH  196 (524)
T ss_dssp             CEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------CEEEEEEEEETTTCC
T ss_pred             ceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC---Cc-cchhhhhh-----ccCCCCceEEEEEccCCCCC
Confidence            33455688999999999932 1       788887754321   00 00000000     00111566666665543211


Q ss_pred             ------cccCCCCC---cccccCC---CCCccccccCCCCCCCCCCCCcCc-----------eeeEeecccCEEEEEECC
Q 046899          148 ------LAAEPGSA---KSTASGG---ANSKNASKSGGNGDKPLESPSIGA-----------RGKYLGHEDTVEDVQFCP  204 (407)
Q Consensus       148 ------~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~i~i~d~~~~~~-----------~~~~~~~~~~v~~l~~~~  204 (407)
                            +..+...+   .+.+.+.   ....+++++.|+.+++||+..+..           ...+.+|...|++++|+|
T Consensus       197 ~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~  276 (524)
T 2j04_B          197 CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS  276 (524)
T ss_dssp             EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS
T ss_pred             ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC
Confidence                  12222222   2333211   134688899999999999976542           236778999999999998


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE--EecCCCC-CEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899          205 SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV--DWNPHDV-NLILTGSADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       205 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l--~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                      ++  .|++|+.||+|++||++++.. ....+.+|...|++|  .|+| ++ ++|++|+.|++|++||+++      ++++
T Consensus       277 ~~--~lasgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~------~~~~  346 (524)
T 2j04_B          277 PT--TVVCGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKD------IATT  346 (524)
T ss_dssp             SS--EEEEEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGG------HHHH
T ss_pred             CC--eEEEEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCC------CCcc
Confidence            54  799999999999999997753 345677999999999  5677 76 8999999999999999998      6777


Q ss_pred             eeecCCCC--CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeC
Q 046899          282 HKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLI  359 (407)
Q Consensus       282 ~~~~~h~~--~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~  359 (407)
                      .++.+|..  .|.+++|+|++.. |++++.|++|++||++++..+..+.+|..+|++++|||+                 
T Consensus       347 ~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~-----------------  408 (524)
T 2j04_B          347 KTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL-----------------  408 (524)
T ss_dssp             CEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS-----------------
T ss_pred             cccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC-----------------
Confidence            77776653  5899999999985 579999999999999998888888899999999999998                 


Q ss_pred             ccceeeeEEEeeeEEEeecc
Q 046899          360 HGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       360 ~~~~i~~~~~d~~i~iwd~~  379 (407)
                       +..|++|+.|++|+|||+.
T Consensus       409 -g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          409 -HPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             -CCBCEEEETTTEEECCBSC
T ss_pred             -CCeEEEEECCCEEEEEech
Confidence             8899999999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.9e-33  Score=284.51  Aligned_cols=271  Identities=16%  Similarity=0.188  Sum_probs=231.9

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      ....+|.+.|.+++|+| ++++||+|+.||.|+|||+.++.....+.+|...+     ....|.                
T Consensus         7 ~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~s----------------   64 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPV-----RAGKFI----------------   64 (814)
T ss_dssp             EEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-----EEEEEE----------------
T ss_pred             eeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcE-----EEEEEe----------------
Confidence            34458999999999999 88999999999999999998877666665553321     011111                


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                        +.   ...+++++.++.+++||..+++.+..+.+|...|.+++|+|++ .+|++++.||.|++||++++.. ....+.
T Consensus        65 --~~---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~-~~~~~~  137 (814)
T 3mkq_A           65 --AR---KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA-LEQTFE  137 (814)
T ss_dssp             --GG---GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSE-EEEEEE
T ss_pred             --CC---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCce-EEEEEc
Confidence              12   2357888899999999999999999999999999999999999 7899999999999999987642 466777


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-CCEEEEEEcC--CCCCEEEEeeCCCeE
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-AAVLCVQWSP--DKSSVFGSSAEDGIL  313 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~--~~~~ll~s~~~d~~i  313 (407)
                      .|...|.+++|+|.+++.|++++.||.|++||++.      +.+...+..+. ..+.+++|+|  ++.++ ++++.||.|
T Consensus       138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i  210 (814)
T 3mkq_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPDKPYM-ITASDDLTI  210 (814)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC------SSCSEEEECCCTTCCCEEEECCSTTCCEE-EEECTTSEE
T ss_pred             CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CcceeEEecCCCCCEEEEEEEECCCCCEE-EEEeCCCEE
Confidence            89999999999996678999999999999999988      66777776654 8999999999  88855 699999999


Q ss_pred             EEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899          314 NIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL  393 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  393 (407)
                      ++||+++++.+..+.+|..+|++++|+|+                  +..+++++.||.|++||+.      +++++..+
T Consensus       211 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~l~~~~~dg~v~vwd~~------~~~~~~~~  266 (814)
T 3mkq_A          211 KIWDYQTKSCVATLEGHMSNVSFAVFHPT------------------LPIIISGSEDGTLKIWNSS------TYKVEKTL  266 (814)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSS------------------SSEEEEEETTSCEEEEETT------TCSEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCC------------------CCEEEEEeCCCeEEEEECC------CCcEEEEe
Confidence            99999998888889999999999999998                  7899999999999999998      67777788


Q ss_pred             hhcccceeEeeccC
Q 046899          394 DKFKSHIFGCDKSC  407 (407)
Q Consensus       394 ~~h~~~v~~~~~s~  407 (407)
                      ..|...|.+++|++
T Consensus       267 ~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          267 NVGLERSWCIATHP  280 (814)
T ss_dssp             CCSSSSEEEEEECT
T ss_pred             ecCCCcEEEEEEcc
Confidence            88999999999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1e-32  Score=250.28  Aligned_cols=251  Identities=15%  Similarity=0.203  Sum_probs=197.9

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc----ccccCcCCCCCCCCCcEEEEeccccccccccCCCC
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR----HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      +.+|.+.|++++|+| ++++||+|+.||.|++||+.+....    ..+.+|...                          
T Consensus         7 ~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--------------------------   59 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS--------------------------   59 (351)
T ss_dssp             ECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC--------------------------
T ss_pred             CcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc--------------------------
Confidence            358999999999999 8899999999999999999875322    222222221                          


Q ss_pred             CcccccCC--CCCccccccCCCCCCCCCCCCc---------CceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEE
Q 046899          155 AKSTASGG--ANSKNASKSGGNGDKPLESPSI---------GARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLIL  221 (407)
Q Consensus       155 ~~~~~~~~--~~~~~~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~i  221 (407)
                      +..+....  ....+++++.|+.+++||+..+         +.+..+.+|...|.+++|+|+  + .+|++++.||.|++
T Consensus        60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~i  138 (351)
T 3f3f_A           60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRL  138 (351)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEE
T ss_pred             EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEE
Confidence            11111111  1345788899999999999876         446777889999999999998  7 89999999999999


Q ss_pred             EEcCCCCCCceee-----------ecccCcceEEEEecCC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC
Q 046899          222 WDARSGSTPAVKV-----------EKAHNADIHCVDWNPH--DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS  288 (407)
Q Consensus       222 wd~~~~~~~~~~~-----------~~~~~~~v~~l~~~~~--~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~  288 (407)
                      ||+++++......           ...|...+.+++|+|.  ++.++++++.|+.+.+|+.....    ...+..+.+|.
T Consensus       139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~  214 (351)
T 3f3f_A          139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK----LHVAAKLPGHK  214 (351)
T ss_dssp             EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----EEEEEECCCCC
T ss_pred             ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----eeeeeecCCCC
Confidence            9999876321111           1257789999999993  38999999999999888877621    23477888999


Q ss_pred             CCEEEEEEcCCCC---CEEEEeeCCCeEEEEeCCCC--------------------------------------------
Q 046899          289 AAVLCVQWSPDKS---SVFGSSAEDGILNIWDHEKI--------------------------------------------  321 (407)
Q Consensus       289 ~~v~~v~~~~~~~---~ll~s~~~d~~i~vwd~~~~--------------------------------------------  321 (407)
                      ..|++++|+|++.   .+|++|+.||.|++||++..                                            
T Consensus       215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (351)
T 3f3f_A          215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL  294 (351)
T ss_dssp             SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSE
T ss_pred             cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence            9999999999982   35689999999999999874                                            


Q ss_pred             --CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          322 --GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       322 --~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                        +.+..+.+|..+|++++|+|+                  +..|++++.|+.|+|||+.
T Consensus       295 ~~~~~~~~~~h~~~v~~~~~s~~------------------~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          295 QVELLSEHDDHNGEVWSVSWNLT------------------GTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             EEEEEEEECTTSSCEEEEEECSS------------------SCCEEEEETTSCEEEEEEC
T ss_pred             cccEEEEEecccccEEEEEEcCC------------------CCEEEEecCCCcEEEEecC
Confidence              344556678888888888887                  8899999999999999998

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.9e-34  Score=268.31  Aligned_cols=259  Identities=13%  Similarity=0.099  Sum_probs=209.7

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN  164 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  164 (407)
                      .+++++|+| ++++|++|+.||.|++||+.+......+..+..      ..+..|.                     ...
T Consensus        58 ~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~------~~~~~~~---------------------~~~  109 (420)
T 3vl1_A           58 AGKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGSKMLKRADY------TAVDTAK---------------------LQM  109 (420)
T ss_dssp             CCTTCEEEE-EETTEEEEEETTEEEEEECCSEETTTTSCSCCE------EEEEEEC---------------------SSS
T ss_pred             cccceeeee-cCCeEEEEEcCCcEEEEEecccceeeEEecCCc------eEEEEEe---------------------cCC
Confidence            345789999 888999999999999999987765544433210      0111111                     122


Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEE
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHC  244 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  244 (407)
                      ..+++++.++.+++||...++....+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++  ....+.+|...|.+
T Consensus       110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~  186 (420)
T 3vl1_A          110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGS--NPRTLIGHRATVTD  186 (420)
T ss_dssp             CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--CCEEEECCSSCEEE
T ss_pred             CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc--CceEEcCCCCcEEE
Confidence            457888999999999999988888888999999999999998 799999999999999999888  56777899999999


Q ss_pred             EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEE---------------------EEEcCCC
Q 046899          245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLC---------------------VQWSPDK  300 (407)
Q Consensus       245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~---------------------v~~~~~~  300 (407)
                      ++|+| ++++|++|+.||.|++||+++      ++++..+..   |...|.+                     ++|+|++
T Consensus       187 ~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (420)
T 3vl1_A          187 IAIID-RGRNVLSASLDGTIRLWECGT------GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG  259 (420)
T ss_dssp             EEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred             EEEcC-CCCEEEEEcCCCcEEEeECCC------CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence            99999 899999999999999999998      788888764   3344444                     4557888


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccc-eeeeEEEeeeEEEeec
Q 046899          301 SSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR-LLVCLTMVKVLEIWRM  378 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~i~iwd~  378 (407)
                      .++ ++|+.||.|++||+++.+.+..+. .+..+|++++|+|+                  +. .+++++.|+.|++||+
T Consensus       260 ~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          260 KYV-IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN------------------NANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             EEE-EEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSS------------------CTTEEEEEETTSEEEEEET
T ss_pred             CEE-EEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCC------------------CCCEEEEEeCCCeEEEEEc
Confidence            855 799999999999999988776665 47788999999888                  66 8999999999999999


Q ss_pred             cccccCChH-HHHHHHhh-cccceeEeecc
Q 046899          379 IDLIYRPEE-EVLAELDK-FKSHIFGCDKS  406 (407)
Q Consensus       379 ~~~~~~~~~-~~~~~~~~-h~~~v~~~~~s  406 (407)
                      .      ++ .++..+.+ |...|.++.|+
T Consensus       321 ~------~~~~~~~~~~~~~~~~v~~~~~~  344 (420)
T 3vl1_A          321 R------SPECPVGEFLINEGTPINNVYFA  344 (420)
T ss_dssp             T------CTTSCSEEEEESTTSCEEEEEEE
T ss_pred             C------CCcCchhhhhccCCCCceEEEeC
Confidence            8      44 33566666 66778777664

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.6e-33  Score=251.88  Aligned_cols=288  Identities=13%  Similarity=0.201  Sum_probs=230.3

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-------------CCcEEEEeccccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-------------DQSVVLWSIQDHVSA  147 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------d~~i~~w~~~~~~~~  147 (407)
                      .|.++|.+++|+| ++++++++..++.+.+|+...........+|...+...             |+.+++|++......
T Consensus         7 ~~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A            7 MGSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK   85 (337)
T ss_dssp             EEEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC
T ss_pred             ccCCceeEEEECC-CCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce
Confidence            4678899999999 88999988887777676554433222223344333222             899999999865321


Q ss_pred             --c---c--cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCCCCcEEEEEeCCCc
Q 046899          148 --L---A--AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC  218 (407)
Q Consensus       148 --~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~  218 (407)
                        +   .  .+...+..+........+++++.++.+++||...++  ....+..|...|.+++|+|++ .+|++++.||.
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~  164 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGN  164 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCc
Confidence              1   1  233444444455555678889999999999998877  566777899999999999998 89999999999


Q ss_pred             EEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899          219 LILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP  298 (407)
Q Consensus       219 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  298 (407)
                      |++||+++++  ....+..|...+.+++|+| ++++|++++.||.|++||++.      ++.+..+. |...+.+++|+|
T Consensus       165 v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~-~~~~v~~~~~s~  234 (337)
T 1gxr_A          165 IAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE------GRQLQQHD-FTSQIFSLGYCP  234 (337)
T ss_dssp             EEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------TEEEEEEE-CSSCEEEEEECT
T ss_pred             EEEEeCCCCc--eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCC------CceEeeec-CCCceEEEEECC
Confidence            9999999887  6777888999999999999 899999999999999999998      77777765 778999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          299 DKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       299 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      ++.++ ++++.|+.|++||+++.+. ..+..|..++++++|+|+                  +..+++++.|+.|++||+
T Consensus       235 ~~~~l-~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~------------------~~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          235 TGEWL-AVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYC------------------GKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             TSSEE-EEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTT------------------SSEEEEEETTSEEEEEET
T ss_pred             CCCEE-EEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCC------------------CCEEEEecCCCcEEEEEC
Confidence            99965 6999999999999998654 466778889999999988                  888999999999999999


Q ss_pred             cccccCChHHHHHHHhhcccceeEeeccC
Q 046899          379 IDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       379 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .      +++.+ ....|...|.+++|++
T Consensus       295 ~------~~~~~-~~~~~~~~v~~~~~s~  316 (337)
T 1gxr_A          295 P------YGASI-FQSKESSSVLSCDISV  316 (337)
T ss_dssp             T------TCCEE-EEEECSSCEEEEEECT
T ss_pred             C------CCeEE-EEecCCCcEEEEEECC
Confidence            8      34433 2346888999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-33  Score=261.27  Aligned_cols=284  Identities=11%  Similarity=0.146  Sum_probs=211.3

Q ss_pred             hhhccCceEEEeeeecccCCCeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC
Q 046899           18 QWKSLVPVLYDWLANHNLVWPSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP   93 (407)
Q Consensus        18 ~w~~~~~~~y~~l~~~~~~~p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~   93 (407)
                      .|+.....+..+..  .+.-+..++.|.|    .+++++.|+.+++|-..   ..............+|.+.|++++|+|
T Consensus        47 ~w~~~g~~~~~~~~--~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~  121 (437)
T 3gre_A           47 MGNLRGKLIATLME--NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK---EIIVGEVYSSSLTYDCSSTVTQITMIP  121 (437)
T ss_dssp             GGGCCCCEEEEECT--TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHH---HHHTTCCCSCSEEEECSSCEEEEEECT
T ss_pred             cccccceEEeeecc--CCCCceEEEEECCCCCCEEEEecCCceEEEeECc---ccccCcccceeeeccCCCCEEEEEEeC
Confidence            46655544433222  2344677888888    48899999999999322   211111222334447999999999999


Q ss_pred             CCCeEEEEeeCCCcEEEEeCc---CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccc
Q 046899           94 QNSKIVATHTDSPDVLIWDVE---AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASK  170 (407)
Q Consensus        94 ~~~~~l~tg~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (407)
                       ++++|++|+.||+|++||+.   +++.......+                                             
T Consensus       122 -~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------------------------------------------  155 (437)
T 3gre_A          122 -NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---------------------------------------------  155 (437)
T ss_dssp             -TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---------------------------------------------
T ss_pred             -CCCEEEEEeCCCEEEEEEeccccCCceeeccccc---------------------------------------------
Confidence             88999999999999999995   33322211110                                             


Q ss_pred             cCCCCCCCCCCCCcCceeeEe--e--cccCEEEEE--ECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc--cCcce
Q 046899          171 SGGNGDKPLESPSIGARGKYL--G--HEDTVEDVQ--FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA--HNADI  242 (407)
Q Consensus       171 ~~~~~i~i~d~~~~~~~~~~~--~--~~~~v~~l~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v  242 (407)
                                     .+..+.  .  +...+.++.  +++++ .+|++|+.|+.|++||+++++  ....+..  |...|
T Consensus       156 ---------------~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v  217 (437)
T 3gre_A          156 ---------------CIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAV  217 (437)
T ss_dssp             ---------------EEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCE
T ss_pred             ---------------eeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCce
Confidence                           011111  1  456777877  66888 899999999999999999988  5667766  88999


Q ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcC----CCCCEEEEeeCCCeEEEEe
Q 046899          243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSP----DKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~----~~~~ll~s~~~d~~i~vwd  317 (407)
                      ++++|+| ++++|++|+.||.|++||++.      ++++.++. .|..+|++++|+|    ++. +|++|+.|+.|++||
T Consensus       218 ~~~~~s~-~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          218 SSICIDE-ECCVLILGTTRGIIDIWDIRF------NVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWN  289 (437)
T ss_dssp             EEEEECT-TSCEEEEEETTSCEEEEETTT------TEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEE
T ss_pred             EEEEECC-CCCEEEEEcCCCeEEEEEcCC------ccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEE
Confidence            9999999 899999999999999999998      78888886 7888999996665    565 457999999999999


Q ss_pred             CCCCCcccccccCCCcccCCCCcCcchhc---------cccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          318 HEKIGEKQDYGELKYPIIHPAYSSDMLDI---------ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~---------~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      +++++.+..+.++...+..+.|+|+-..+         ..+.+..+...  .+..|++++.|+.|++||+..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTC
T ss_pred             cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCC
Confidence            99999999999998888888888762111         12223333333  357899999999999999973

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.2e-33  Score=262.51  Aligned_cols=254  Identities=11%  Similarity=0.139  Sum_probs=184.3

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC-----------cccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN-----------RHAVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      .|.+.|++++|+| ++++||+|+.||.|+|||+.+...           ...+.+|....    ..+.-.+.        
T Consensus        26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~----~~~~~~~~--------   92 (447)
T 3dw8_B           26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEF----DYLKSLEI--------   92 (447)
T ss_dssp             CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEE----EGGGTEEE--------
T ss_pred             cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccc----cccccccc--------
Confidence            5789999999999 899999999999999999987652           22233332000    00000000        


Q ss_pred             cCCCCCcccccCCCC--CccccccCCCCCCCCCCCCcCce---------------------------------------e
Q 046899          150 AEPGSAKSTASGGAN--SKNASKSGGNGDKPLESPSIGAR---------------------------------------G  188 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~---------------------------------------~  188 (407)
                        ...+..+......  ..+++++.|+.+++||+..++..                                       .
T Consensus        93 --~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (447)
T 3dw8_B           93 --EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR  170 (447)
T ss_dssp             --CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred             --cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence              0111111112221  34666677777777776543321                                       1


Q ss_pred             e-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-------eecccCcceEEEEecCCCC-CEEEEEe
Q 046899          189 K-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-------VEKAHNADIHCVDWNPHDV-NLILTGS  259 (407)
Q Consensus       189 ~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~~-~~l~tg~  259 (407)
                      . ..+|...|.+++|+|++ .+|++| .|+.|++||+++... ...       .+..|...|++++|+| ++ ++|++|+
T Consensus       171 ~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~  246 (447)
T 3dw8_B          171 IFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSS  246 (447)
T ss_dssp             EECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEE
T ss_pred             EeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECC-CCCcEEEEEe
Confidence            2 25799999999999998 789998 799999999985432 222       3568999999999999 66 9999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCc----eeeecCCCC------------CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC-CC
Q 046899          260 ADNSIHMFDRRKLTSDGVGSP----IHKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGILNIWDHEK-IG  322 (407)
Q Consensus       260 ~dg~i~vwd~~~~~~~~~~~~----~~~~~~h~~------------~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~-~~  322 (407)
                      .||.|++||++.      ++.    +..+..|..            .|.+++|+|++++| ++++. +.|++||+++ .+
T Consensus       247 ~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          247 SKGTIRLCDMRA------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYM-MTRDY-LSVKVWDLNMENR  318 (447)
T ss_dssp             TTSCEEEEETTT------CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEE-EEEES-SEEEEEETTCCSS
T ss_pred             CCCeEEEEECcC------CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEE-EEeeC-CeEEEEeCCCCcc
Confidence            999999999998      555    788888876            89999999999965 68887 9999999997 77


Q ss_pred             cccccccCCCccc---------------CCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          323 EKQDYGELKYPII---------------HPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       323 ~~~~~~~~~~~v~---------------~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .+..+..|...+.               .++|+|+                  +..|++++.|+.|+|||+.
T Consensus       319 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~------------------~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          319 PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS------------------DSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTT------------------SSEEEEECSTTEEEEEETT
T ss_pred             ccceeeccccccccccccccccccccceEEEECCC------------------CCEEEEeccCCEEEEEEcC
Confidence            7788877754332               2667666                  8889999999999999997

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-31  Score=271.02  Aligned_cols=269  Identities=13%  Similarity=0.169  Sum_probs=217.6

Q ss_pred             CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      .-+...+.|.|+   +++++.++.+++|.   +..     ........+|.++|++++|+| ++++|++|+.||.|++||
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd---~~~-----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWN---YET-----QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEE---TTT-----TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEE---CCC-----CceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence            445677888874   78888999999992   211     122334447999999999999 889999999999999999


Q ss_pred             CcCCCCcccccCcCCCCCCC--------------CCcEEEEeccccc---cccccCCCCCcccccCC-CCCccccccCCC
Q 046899          113 VEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQDHV---SALAAEPGSAKSTASGG-ANSKNASKSGGN  174 (407)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  174 (407)
                      +.+++....+.+|...+...              |+.+++|++.+..   ..+..+...+..+...+ ....+++++.++
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            99988877777665543322              8999999998762   23334444444444444 345688899999


Q ss_pred             CCCCCCCCCcCceeeEeecc-cCEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899          175 GDKPLESPSIGARGKYLGHE-DTVEDVQFCP--SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      .+++||...++....+..+. ..+.+++|+|  ++ .++++++.||.|++||+++++  ....+..|...|.+++|+| +
T Consensus       164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-~  239 (814)
T 3mkq_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHP-T  239 (814)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTE--EEEEEECCSSCEEEEEECS-S
T ss_pred             eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcC-C
Confidence            99999999888887777655 8999999999  77 799999999999999999887  6777888999999999999 8


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      ++++++|+.||.|++||+.+      ++.+..+..|...+.+++|+|++..++++++.|+.+.+|++.....
T Consensus       240 ~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          240 LPIIISGSEDGTLKIWNSST------YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             SSEEEEEETTSCEEEEETTT------CSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred             CCEEEEEeCCCeEEEEECCC------CcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence            99999999999999999998      8899999999999999999999986534555588899999876443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.8e-32  Score=266.16  Aligned_cols=289  Identities=15%  Similarity=0.250  Sum_probs=232.1

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC----CCcccccCcCCC-------CC--CC--------CCcEEEE
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ----PNRHAVLGAADS-------HP--DL--------DQSVVLW  139 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~----~~~~~~~~~~~~-------~~--~~--------d~~i~~w  139 (407)
                      .|.+.|++++|+| ++++|++++ ++.|++||+.++    +....+.+|...       .+  +.        |+.|++|
T Consensus        16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            5899999999999 888999998 789999999988    677667666554       23  33        8999999


Q ss_pred             ecccc--------c--cccccCCCCCcccccCCCCCccccccCC----CCCCCCCCCCcCceeeEeecccCEEEEEECCC
Q 046899          140 SIQDH--------V--SALAAEPGSAKSTASGGANSKNASKSGG----NGDKPLESPSIGARGKYLGHEDTVEDVQFCPS  205 (407)
Q Consensus       140 ~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~  205 (407)
                      ++.++        .  ..+..+...+..+........+++++.+    +.+.+||  .++.+..+.+|...|.+++|+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~  171 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS  171 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence            99643        1  2333345555555555555667777766    6888898  56678888899999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc---ceEEEEecCCC-CCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899          206 SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA---DIHCVDWNPHD-VNLILTGSADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       206 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~l~~~~~~-~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                      +..++++++.|+.|++||+++++  ....+..|..   .|.+++|+| + +++|++++.||.|++||+++      ++++
T Consensus       172 ~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~------~~~~  242 (615)
T 1pgu_A          172 RPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS------GEFL  242 (615)
T ss_dssp             SSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT------CCEE
T ss_pred             CCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC------CCEe
Confidence            95589999999999999998877  6777888998   999999999 7 99999999999999999998      8889


Q ss_pred             eee-c---CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEe
Q 046899          282 HKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMH  357 (407)
Q Consensus       282 ~~~-~---~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~  357 (407)
                      ..+ .   .|...|.+++|+ ++.++ ++++.|+.|++||+++++.+..+..+..++....             ..+.. 
T Consensus       243 ~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-  306 (615)
T 1pgu_A          243 KYIEDDQEPVQGGIFALSWL-DSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ-------------VGVVA-  306 (615)
T ss_dssp             EECCBTTBCCCSCEEEEEES-SSSEE-EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE-------------EEEEE-
T ss_pred             EEecccccccCCceEEEEEc-CCCEE-EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce-------------eEEEe-
Confidence            888 6   899999999999 88855 7999999999999999888777766532221111             11111 


Q ss_pred             eCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899          358 LIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       358 ~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~  405 (407)
                      . .+..+++++.|+.|++||+.      +++++..+.+|.+.|.+++|
T Consensus       307 ~-~~~~l~~~~~~g~i~~~d~~------~~~~~~~~~~~~~~v~~~~~  347 (615)
T 1pgu_A          307 T-GNGRIISLSLDGTLNFYELG------HDEVLKTISGHNKGITALTV  347 (615)
T ss_dssp             E-ETTEEEEEETTSCEEEEETT------EEEEEEEECCCSSCEEEEET
T ss_pred             C-CCCeEEEEECCCCEEEEECC------CCcEEEEEeCCCCCEEEEEe
Confidence            1 47788999999999999988      56677778888888888887

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=2.2e-32  Score=254.24  Aligned_cols=263  Identities=14%  Similarity=0.193  Sum_probs=210.8

Q ss_pred             eCCCc--eEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           81 IHPGE--VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        81 ~h~~~--v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      +|...  ++++.|++   ..+++++.||.|++||+.+++....+....                         ...+..+
T Consensus        89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-------------------------~~~v~~v  140 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDE-------------------------STYVASV  140 (401)
T ss_dssp             TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCT-------------------------TCCEEEE
T ss_pred             CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCC-------------------------CCCEEEE
Confidence            56555  44566654   347778899999999998876544332210                         0111111


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                      ........+++++.++.+++||..+++.+..+.+|...|.+++|++   .+|++|+.||.|++||++.... ....+..|
T Consensus       141 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~  216 (401)
T 4aez_A          141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH-QIGTLQGH  216 (401)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC-EEEEEECC
T ss_pred             EECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc-eeeEEcCC
Confidence            1222234578888999999999999999999999999999999953   6899999999999999995443 46777899


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee--CCCeEEEE
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGILNIW  316 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~--~d~~i~vw  316 (407)
                      ...|.+++|+| ++++|++|+.||.|++||+++      ++++..+..|...|.+++|+|++..++++++  .|+.|++|
T Consensus       217 ~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          217 SSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSCEEEEETTC------SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred             CCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC------CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence            99999999999 999999999999999999998      8899999999999999999999988988876  79999999


Q ss_pred             eCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeee--EEEeeeEEEeeccccccCChHHH--HHH
Q 046899          317 DHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC--LTMVKVLEIWRMIDLIYRPEEEV--LAE  392 (407)
Q Consensus       317 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~i~iwd~~~~~~~~~~~~--~~~  392 (407)
                      |+.+++.+..+. +..++.+++|+|+                  +..+++  |+.|+.|+|||+.      +++.  +..
T Consensus       290 d~~~~~~~~~~~-~~~~v~~~~~s~~------------------~~~l~~~~g~~dg~i~v~~~~------~~~~~~~~~  344 (401)
T 4aez_A          290 NAATGARVNTVD-AGSQVTSLIWSPH------------------SKEIMSTHGFPDNNLSIWSYS------SSGLTKQVD  344 (401)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECSS------------------SSEEEEEECTTTCEEEEEEEE------TTEEEEEEE
T ss_pred             ECCCCCEEEEEe-CCCcEEEEEECCC------------------CCeEEEEeecCCCcEEEEecC------CccceeEEE
Confidence            999988777764 5667888888887                  777877  4489999999997      3322  234


Q ss_pred             HhhcccceeEeeccC
Q 046899          393 LDKFKSHIFGCDKSC  407 (407)
Q Consensus       393 ~~~h~~~v~~~~~s~  407 (407)
                      +.+|.+.|.+++|++
T Consensus       345 ~~~h~~~v~~~~~s~  359 (401)
T 4aez_A          345 IPAHDTRVLYSALSP  359 (401)
T ss_dssp             EECCSSCCCEEEECT
T ss_pred             ecCCCCCEEEEEECC
Confidence            678999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=1.3e-31  Score=251.75  Aligned_cols=254  Identities=16%  Similarity=0.277  Sum_probs=214.4

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      +|...|.++.+   ++++|++|+.||.|++||+.+++....+.+|...       |.....                   
T Consensus       131 ~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-------v~~l~~-------------------  181 (435)
T 1p22_A          131 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS-------VLCLQY-------------------  181 (435)
T ss_dssp             SSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC-------EEEEEC-------------------
T ss_pred             CCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCc-------EEEEEE-------------------
Confidence            57778999875   6789999999999999999988877776665433       111111                   


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC-ceeeecccC
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP-AVKVEKAHN  239 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~  239 (407)
                        ....+++++.||.+++||..+++.+..+.+|...|.+++|++   .++++|+.||.|++||++++... ....+.+|.
T Consensus       182 --~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  256 (435)
T 1p22_A          182 --DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  256 (435)
T ss_dssp             --CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred             --CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC
Confidence              124578899999999999999999999999999999999974   58999999999999999987632 125677899


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ..|.+++|   +++++++|+.||.|++||+++      ++++.++.+|...|.+++|+  +. ++++|+.||.|++||++
T Consensus       257 ~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~  324 (435)
T 1p22_A          257 AAVNVVDF---DDKYIVSASGDRTIKVWNTST------CEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIE  324 (435)
T ss_dssp             SCEEEEEE---ETTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETT
T ss_pred             CcEEEEEe---CCCEEEEEeCCCeEEEEECCc------CcEEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECC
Confidence            99999999   458999999999999999999      89999999999999999995  45 45799999999999999


Q ss_pred             CCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH---------HH
Q 046899          320 KIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE---------VL  390 (407)
Q Consensus       320 ~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~---------~~  390 (407)
                      +++.+..+.+|..+|++++|  +                  +..|++|+.||+|+|||+.      .++         ++
T Consensus       325 ~~~~~~~~~~h~~~v~~~~~--~------------------~~~l~sg~~dg~i~vwd~~------~~~~~~~~~~~~~~  378 (435)
T 1p22_A          325 CGACLRVLEGHEELVRCIRF--D------------------NKRIVSGAYDGKIKVWDLV------AALDPRAPAGTLCL  378 (435)
T ss_dssp             TCCEEEEECCCSSCEEEEEC--C------------------SSEEEEEETTSCEEEEEHH------HHTSTTSCTTTTEE
T ss_pred             CCCEEEEEeCCcCcEEEEEe--c------------------CCEEEEEeCCCcEEEEECC------CCCCccccccchhe
Confidence            99999999999988877776  3                  6679999999999999997      444         66


Q ss_pred             HHHhhcccceeEeecc
Q 046899          391 AELDKFKSHIFGCDKS  406 (407)
Q Consensus       391 ~~~~~h~~~v~~~~~s  406 (407)
                      ..+.+|.+.|++++|.
T Consensus       379 ~~~~~h~~~v~~l~~~  394 (435)
T 1p22_A          379 RTLVEHSGRVFRLQFD  394 (435)
T ss_dssp             EEECCCSSCCCCEEEC
T ss_pred             eeccCCCCCeEEEEeC
Confidence            7788999999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.98  E-value=4.7e-31  Score=239.48  Aligned_cols=258  Identities=11%  Similarity=0.123  Sum_probs=208.2

Q ss_pred             cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEE
Q 046899           35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLI  110 (407)
Q Consensus        35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~v  110 (407)
                      +.-+..++.|.|+   +++++.++.+++|-.     ....+........+|.+.|++++|+| +++ +|++|+.||.|++
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A           10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKF-----DIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEEE-----ETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEe-----CCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEE
Confidence            4446677889874   788999999999922     22222233455568999999999999 788 9999999999999


Q ss_pred             EeC-cCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee
Q 046899          111 WDV-EAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK  189 (407)
Q Consensus       111 wd~-~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~  189 (407)
                      ||+ .++..                                                                     ..
T Consensus        84 wd~~~~~~~---------------------------------------------------------------------~~   94 (342)
T 1yfq_A           84 VDLIGSPSF---------------------------------------------------------------------QA   94 (342)
T ss_dssp             ECSSSSSSE---------------------------------------------------------------------EE
T ss_pred             EEeccCCce---------------------------------------------------------------------Ee
Confidence            998 65421                                                                     22


Q ss_pred             Eee--cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC---------CCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899          190 YLG--HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS---------GSTPAVKVEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       190 ~~~--~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                      +.+  |...|.+++|+| + .+|++++.|+.|++||+++         .+  ....+. |...|.+++|+| ++  ++++
T Consensus        95 ~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~-~~--l~~~  166 (342)
T 1yfq_A           95 LTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK-VKNKIFTMDTNS-SR--LIVG  166 (342)
T ss_dssp             CBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS-SCCCEEEEEECS-SE--EEEE
T ss_pred             ccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCC--eeeEEe-eCCceEEEEecC-Cc--EEEE
Confidence            335  888999999999 6 7999999999999999987         55  344443 889999999998 54  9999


Q ss_pred             eCCCcEEEEeCCC-CCCCCCCCceeeecCCCCCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCCC------CcccccccC
Q 046899          259 SADNSIHMFDRRK-LTSDGVGSPIHKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEKI------GEKQDYGEL  330 (407)
Q Consensus       259 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~~------~~~~~~~~~  330 (407)
                      +.|+.|++||++. ..    .........|...|.+++|+| ++.++ ++++.||.|++||++..      +....+..+
T Consensus       167 ~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          167 MNNSQVQWFRLPLCED----DNGTIEESGLKYQIRDVALLPKEQEGY-ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             ESTTEEEEEESSCCTT----CCCEEEECSCSSCEEEEEECSGGGCEE-EEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             eCCCeEEEEECCcccc----ccceeeecCCCCceeEEEECCCCCCEE-EEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence            9999999999987 32    223445556888999999999 98854 79999999999999886      556666666


Q ss_pred             CC---------cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhc-ccce
Q 046899          331 KY---------PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKF-KSHI  400 (407)
Q Consensus       331 ~~---------~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v  400 (407)
                      ..         +|++++|+|+                  +..|++++.|+.|++||+.      +++++..+.+| .+.|
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~------------------~~~l~~~~~dg~i~vwd~~------~~~~~~~~~~~h~~~v  297 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPR------------------HKFLYTAGSDGIISCWNLQ------TRKKIKNFAKFNEDSV  297 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTT------------------TCCEEEEETTSCEEEEETT------TTEEEEECCCCSSSEE
T ss_pred             cccccccccceeEEEEEEcCC------------------CCEEEEecCCceEEEEcCc------cHhHhhhhhcccCCCc
Confidence            54         8888888887                  8899999999999999998      67778889998 9999


Q ss_pred             eEee
Q 046899          401 FGCD  404 (407)
Q Consensus       401 ~~~~  404 (407)
                      ++++
T Consensus       298 ~~~~  301 (342)
T 1yfq_A          298 VKIA  301 (342)
T ss_dssp             EEEE
T ss_pred             eEec
Confidence            8876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1.1e-31  Score=248.70  Aligned_cols=300  Identities=14%  Similarity=0.143  Sum_probs=191.8

Q ss_pred             cCCCeeEEEEee------cccccCccceEEEEeeccc-CcccCCcceeeEEEeeCCCceEEEEEeC--------------
Q 046899           35 LVWPSLSCRWGP------QLEQATYKNRQRLYLSEQF-NEEARSPFVKKFKTIIHPGEVNRIRELP--------------   93 (407)
Q Consensus        35 ~~~p~~s~~~~~------~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------------   93 (407)
                      ++...+.+.|..      .++....++.+++|....- ................|...+..+.|.+              
T Consensus        14 l~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (393)
T 4gq1_A           14 LNVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN   93 (393)
T ss_dssp             TTCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred             CCCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence            334445566732      3444455667888844311 1111111222333444555555555543              


Q ss_pred             -----CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccc
Q 046899           94 -----QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNA  168 (407)
Q Consensus        94 -----~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (407)
                           .++.+||+|+.|++|+|||..++.....                                               
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~-----------------------------------------------  126 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQ-----------------------------------------------  126 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEE-----------------------------------------------
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCcccee-----------------------------------------------
Confidence                 3566899999999999999876532211                                               


Q ss_pred             cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC--------CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP--------SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                                      ..+..+.+|.+.|++++|+|        ++ ++|++|+.|++|++||++++.  .......|..
T Consensus       127 ----------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~--~~~~~~~~~~  187 (393)
T 4gq1_A          127 ----------------HVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG--PILAGYPLSS  187 (393)
T ss_dssp             ----------------EEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE--EEEEEEECSS
T ss_pred             ----------------eeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc--eeeeecCCCC
Confidence                            12234558999999999997        56 899999999999999998877  5667778999


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-------------------CceeeecCCCCCEEEEEEc-CCC
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG-------------------SPIHKFEGHSAAVLCVQWS-PDK  300 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-------------------~~~~~~~~h~~~v~~v~~~-~~~  300 (407)
                      .+.+++|+|.++++|++|+.||.|++||+++.......                   .......+|...|.+++|+ |++
T Consensus       188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg  267 (393)
T 4gq1_A          188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG  267 (393)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT
T ss_pred             CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC
Confidence            99999999944568999999999999999873311000                   0011224578889999987 788


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc--eeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          301 SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL--LTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~--~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      ..| ++++.|+++++||+...+....+..+...+..+.++++........  ...++.....+.++++|+.|++|+|||+
T Consensus       268 ~~l-~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~  346 (393)
T 4gq1_A          268 SGI-LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT  346 (393)
T ss_dssp             CEE-EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred             CEE-EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence            865 6999999999999999888888888888888888888743222111  1112222233446778899999999999


Q ss_pred             cccccCChHHHHHHHhhcccceeEeeccC
Q 046899          379 IDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       379 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .      +++++..+.+|...|.+|+||+
T Consensus       347 ~------~~~~~~~~~~~~~~V~svafsp  369 (393)
T 4gq1_A          347 Y------EKDSNSIPIQLGMPIVDFCWHQ  369 (393)
T ss_dssp             T------CTTCCEEEEECSSCEEEEEECT
T ss_pred             C------CCcEEEEecCCCCcEEEEEEcC
Confidence            8      6777777889999999999996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7.8e-32  Score=269.75  Aligned_cols=252  Identities=18%  Similarity=0.207  Sum_probs=203.3

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC--CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ--PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      ..+|.+.|++++|+| ++++|++|+.||.|+|||+.+.  .....+.+|...                          +.
T Consensus         5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~--------------------------V~   57 (753)
T 3jro_A            5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--------------------------VW   57 (753)
T ss_dssp             ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSC--------------------------EE
T ss_pred             cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCc--------------------------eE
Confidence            348999999999999 8889999999999999999833  333344444322                          11


Q ss_pred             ccccCCC--CCccccccCCCCCCCCCCCCcC--ceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          157 STASGGA--NSKNASKSGGNGDKPLESPSIG--ARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       157 ~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      .+.....  ...+++++.||.+++||..+++  .+..+.+|...|.+++|+|+  + .++++|+.||.|++||++++...
T Consensus        58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~  136 (753)
T 3jro_A           58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT  136 (753)
T ss_dssp             EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCC
T ss_pred             EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCc
Confidence            1111111  3458889999999999998876  67777889999999999998  7 89999999999999999988544


Q ss_pred             ceeeecccCcceEEEEecCC------------CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899          231 AVKVEKAHNADIHCVDWNPH------------DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP  298 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~------------~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  298 (407)
                      .......|...|.+++|+|.            ++.++++|+.||.|++||++.....  ..+...+.+|..+|++++|+|
T Consensus       137 ~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp  214 (753)
T 3jro_A          137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSP  214 (753)
T ss_dssp             CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECC
T ss_pred             ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEecc
Confidence            55667789999999999994            4889999999999999999872110  155678889999999999999


Q ss_pred             C---CCCEEEEeeCCCeEEEEeCCCCC-----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe
Q 046899          299 D---KSSVFGSSAEDGILNIWDHEKIG-----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV  370 (407)
Q Consensus       299 ~---~~~ll~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d  370 (407)
                      +   +. ++++|+.||.|++||+++.+     .......+..+|++++|+|+                  +..+++++.|
T Consensus       215 ~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd------------------g~~l~s~s~D  275 (753)
T 3jro_A          215 TVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS------------------GNVLALSGGD  275 (753)
T ss_dssp             CCSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT------------------TCCEEEECSS
T ss_pred             CCCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC------------------CCEEEEEcCC
Confidence            9   66 45799999999999999864     34445567888999999998                  8899999999


Q ss_pred             eeEEEeecc
Q 046899          371 KVLEIWRMI  379 (407)
Q Consensus       371 ~~i~iwd~~  379 (407)
                      |.|+||++.
T Consensus       276 g~I~vwd~~  284 (753)
T 3jro_A          276 NKVTLWKEN  284 (753)
T ss_dssp             SCEECCBCC
T ss_pred             CEEEEEecC
Confidence            999999987

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=1.1e-31  Score=239.11  Aligned_cols=232  Identities=17%  Similarity=0.264  Sum_probs=181.9

Q ss_pred             CCcccccCCCCCccccccCCCCCCCCCCCC--cCceeeEeecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCC
Q 046899          154 SAKSTASGGANSKNASKSGGNGDKPLESPS--IGARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGST  229 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~  229 (407)
                      .+..+........+++++.|+.+++||...  .+.+..+.+|...|.+++|+|.  + .+|++|+.|++|++||++++..
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~   89 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRW   89 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCB
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCce
Confidence            333333444455689999999999999864  4678889999999999999864  5 7999999999999999998753


Q ss_pred             CceeeecccCcceEEEEecCCC--CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC-------
Q 046899          230 PAVKVEKAHNADIHCVDWNPHD--VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK-------  300 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~--~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-------  300 (407)
                      .....+..|...|.+++|+| +  +.+|++|+.||.|++||++...    ......+.+|...|.+++|+|++       
T Consensus        90 ~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~----~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  164 (297)
T 2pm7_B           90 SQIAVHAVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSS----CBCCEEEECCSSCEEEEEECCCC-------
T ss_pred             EEEEEeecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCC----ceeeeeeecccCccceEeecCCcccccccC
Confidence            34566778999999999999 5  7899999999999999998721    12246778899999999999973       


Q ss_pred             -----CCEEEEeeCCCeEEEEeCCCCC----cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee
Q 046899          301 -----SSVFGSSAEDGILNIWDHEKIG----EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK  371 (407)
Q Consensus       301 -----~~ll~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~  371 (407)
                           ..+|++|+.|++|++||+++.+    ....+.+|..+|.+++|+|+.               ..+..|++++.|+
T Consensus       165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~---------------~~~~~las~s~D~  229 (297)
T 2pm7_B          165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------------LLRSYMASVSQDR  229 (297)
T ss_dssp             -----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------------SSSEEEEEEETTS
T ss_pred             CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC---------------CCceEEEEEECCC
Confidence                 2356899999999999998765    456788899999999999971               0136899999999


Q ss_pred             eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          372 VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       372 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      +|+|||+......... .+....+|...|++++||+
T Consensus       230 ~v~iWd~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~  264 (297)
T 2pm7_B          230 TCIIWTQDNEQGPWKK-TLLKEEKFPDVLWRASWSL  264 (297)
T ss_dssp             CEEEEEESSTTSCCEE-EESSSSCCSSCEEEEEECS
T ss_pred             cEEEEEeCCCCCccce-eeeecccCCCcEEEEEECC
Confidence            9999999731100000 0111257888999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.9e-30  Score=228.63  Aligned_cols=267  Identities=14%  Similarity=0.165  Sum_probs=209.0

Q ss_pred             cCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899           35 LVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW  111 (407)
Q Consensus        35 ~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  111 (407)
                      +.-+...+.| |   .+++++.|+.+++|-..        ..........|.+.|.+++|+| ++++|++|+.||.|++|
T Consensus        17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~--------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A           17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD--------DQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGV   86 (313)
T ss_dssp             CSSCEEEEEE-EETTEEEEEETTSEEEEEEES--------SSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred             CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC--------CCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEE
Confidence            3445666677 5   48899999999999221        1122344557999999999999 88999999999999999


Q ss_pred             eCcCCC---CcccccCcCCCCCCC------------CCcEEEEeccccccccccCCCCCcccccCC-CCCccccccCCCC
Q 046899          112 DVEAQP---NRHAVLGAADSHPDL------------DQSVVLWSIQDHVSALAAEPGSAKSTASGG-ANSKNASKSGGNG  175 (407)
Q Consensus       112 d~~~~~---~~~~~~~~~~~~~~~------------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  175 (407)
                      ++....   ....+..|...+...            |+.+++||.......+..+...+....... ....+++++.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  166 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT  166 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC
T ss_pred             EeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC
Confidence            987653   334444444433222            899999995444444555555443333322 3456888999999


Q ss_pred             CCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCE
Q 046899          176 DKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNL  254 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~  254 (407)
                      +++||  ..+....+.. |...|.+++|+|++ . +++++.||.|++||+++++  ....+..|...|.+++|+| ++ .
T Consensus       167 i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~-~  238 (313)
T 3odt_A          167 IKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKLLP-NG-D  238 (313)
T ss_dssp             EEEEE--TTEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TS-C
T ss_pred             EEEEe--cCceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh--hhhhhhcCCceEEEEEEec-CC-C
Confidence            99999  4455666666 89999999999998 5 9999999999999999888  6778889999999999999 76 5


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899          255 ILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY  327 (407)
Q Consensus       255 l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~  327 (407)
                      |++++.||.|++||+++      ++++..+..|...|.+++|+|+++ + ++++.||.|++||+++.+.....
T Consensus       239 l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          239 IVSCGEDRTVRIWSKEN------GSLKQVITLPAISIWSVDCMSNGD-I-IVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             EEEEETTSEEEEECTTT------CCEEEEEECSSSCEEEEEECTTSC-E-EEEETTSCEEEEESCGGGCCC--
T ss_pred             EEEEecCCEEEEEECCC------CceeEEEeccCceEEEEEEccCCC-E-EEEeCCCcEEEEeCCCCceeehh
Confidence            88999999999999999      889999999999999999999998 5 47899999999999986655433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=5.6e-31  Score=241.02  Aligned_cols=236  Identities=17%  Similarity=0.255  Sum_probs=189.3

Q ss_pred             CcceeeEEEeeCCCceEEEEEeCCC--CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccccc
Q 046899           71 SPFVKKFKTIIHPGEVNRIRELPQN--SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSAL  148 (407)
Q Consensus        71 ~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~  148 (407)
                      .|........+|.+.|++++|+|+.  +++|++|+.||.|++||+.+...                              
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~------------------------------   76 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ------------------------------   76 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC------------------------------
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc------------------------------
Confidence            3333344445899999999999944  79999999999999999975210                              


Q ss_pred             ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899          149 AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS  228 (407)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  228 (407)
                                                          .....+.+|...|.+++|+|++ .+|++++.||.|++||+++++
T Consensus        77 ------------------------------------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~  119 (368)
T 3mmy_A           77 ------------------------------------TIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQ  119 (368)
T ss_dssp             ------------------------------------EEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred             ------------------------------------eeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCCCC
Confidence                                                1124566799999999999998 899999999999999999877


Q ss_pred             CCceeeecccCcceEEEEe--cCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC------------------
Q 046899          229 TPAVKVEKAHNADIHCVDW--NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS------------------  288 (407)
Q Consensus       229 ~~~~~~~~~~~~~v~~l~~--~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~------------------  288 (407)
                        .. ....|...|.+++|  +| ++++|++++.||.|++||+++      ++++..+..|.                  
T Consensus       120 --~~-~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 3mmy_A          120 --AI-QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRS------SNPMMVLQLPERCYCADVIYPMAVVATAE  189 (368)
T ss_dssp             --EE-EEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSC------SSCSEEEECSSCEEEEEEETTEEEEEEGG
T ss_pred             --ce-eeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCC------CcEEEEEecCCCceEEEecCCeeEEEeCC
Confidence              33 45689999999999  88 889999999999999999998      66666555432                  


Q ss_pred             -----------------------CCEEEEEEcCCCCC---EEEEeeCCCeEEEEeCCCC---CcccccccCCC-------
Q 046899          289 -----------------------AAVLCVQWSPDKSS---VFGSSAEDGILNIWDHEKI---GEKQDYGELKY-------  332 (407)
Q Consensus       289 -----------------------~~v~~v~~~~~~~~---ll~s~~~d~~i~vwd~~~~---~~~~~~~~~~~-------  332 (407)
                                             ..+.++++.++...   .+++++.|+.|++||++..   .....+..|..       
T Consensus       190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (368)
T 3mmy_A          190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA  269 (368)
T ss_dssp             GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred             CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence                                   33445555544432   1479999999999999986   34455556554       


Q ss_pred             -----cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          333 -----PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       333 -----~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                           +|++++|+|+                  +..|++++.|+.|+|||+.      +++++..+.+|...|++++||+
T Consensus       270 ~~~~~~v~~~~~sp~------------------~~~l~s~~~dg~i~iwd~~------~~~~~~~~~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          270 PQDIYAVNGIAFHPV------------------HGTLATVGSDGRFSFWDKD------ARTKLKTSEQLDQPISACCFNH  325 (368)
T ss_dssp             CEEECCEEEEEECTT------------------TCCEEEEETTSCEEEEETT------TTEEEEECCCCSSCEEEEEECT
T ss_pred             cccccceEEEEEecC------------------CCEEEEEccCCeEEEEECC------CCcEEEEecCCCCCceEEEECC
Confidence                 6888888887                  8899999999999999998      7888888999999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.1e-30  Score=234.18  Aligned_cols=272  Identities=15%  Similarity=0.166  Sum_probs=214.2

Q ss_pred             cccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEE
Q 046899           33 HNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVL  109 (407)
Q Consensus        33 ~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~  109 (407)
                      ..+.-+..++.|.|+   +++++.++.+++|.   ..  .   ........+|.+.|.+++|+| ++++|++++.||.|+
T Consensus        29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd---~~--~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWY---SL--N---GERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIK   99 (369)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEESSSCEEEEE---TT--T---CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEE
T ss_pred             EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEe---CC--C---chhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEE
Confidence            345567778899874   88899999999992   11  1   112334447999999999999 889999999999999


Q ss_pred             EEeCcCCCCcccccCcCCCC------CCC--------C-----CcEEEEeccccccc-------------cccCCC--CC
Q 046899          110 IWDVEAQPNRHAVLGAADSH------PDL--------D-----QSVVLWSIQDHVSA-------------LAAEPG--SA  155 (407)
Q Consensus       110 vwd~~~~~~~~~~~~~~~~~------~~~--------d-----~~i~~w~~~~~~~~-------------~~~~~~--~~  155 (407)
                      +||+.+++....+. +...+      ++.        +     +.+.+|++......             +..+..  .+
T Consensus       100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            99999887665554 22111      111        3     89999998865321             111111  22


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                      ..+........+++++.++.+++||+.+ .+.+..+..|...|.+++|+|++ .+|++++.|+.|++||+++++  ....
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~--~~~~  255 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ--VLKK  255 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc--eeee
Confidence            2233333445688899999999999998 77888888999999999999998 899999999999999999887  4555


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCC--------------cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADN--------------SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK  300 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~  300 (407)
                      +. +...+.+++|+| ++.++++++.++              .+++||...      ++++..+.+|...|++++|+|++
T Consensus       256 ~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~v~~~~~s~~~  327 (369)
T 3zwl_B          256 YE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF------EEEIGRVQGHFGPLNTVAISPQG  327 (369)
T ss_dssp             EE-CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTT------CCEEEEEECCSSCEEEEEECTTS
T ss_pred             ec-CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCC------CcchhheecccCcEEEEEECCCC
Confidence            43 788999999999 899999999988              899999998      89999999999999999999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899          301 SSVFGSSAEDGILNIWDHEKIGEKQD  326 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~~~~~~~~  326 (407)
                      ++| ++++.||.|++|+++.......
T Consensus       328 ~~l-~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          328 TSY-ASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             SEE-EEEETTSEEEEEEECHHHHTCC
T ss_pred             CEE-EEEcCCCeEEEEECccccchhH
Confidence            955 7999999999999997554433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1.8e-30  Score=243.88  Aligned_cols=268  Identities=16%  Similarity=0.185  Sum_probs=190.9

Q ss_pred             CeeEEEEee----cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeC
Q 046899           38 PSLSCRWGP----QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDV  113 (407)
Q Consensus        38 p~~s~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  113 (407)
                      ...++.|.|    .+++|+.|+.++||   ++....   ........+|.+.|++|+|+|.++++|+||+.||+|++||+
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lW---d~~~~~---~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLW---NFGIKD---KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEE---CSSCCS---CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEE---ECCCCC---ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            456789987    38899999999999   322221   12233445899999999999978899999999999999999


Q ss_pred             cCCCCcccccCcCC--CC------CC--------CCCcEEEEeccccc-cccccCCCCCcccccCCCCC-ccccccCCCC
Q 046899          114 EAQPNRHAVLGAAD--SH------PD--------LDQSVVLWSIQDHV-SALAAEPGSAKSTASGGANS-KNASKSGGNG  175 (407)
Q Consensus       114 ~~~~~~~~~~~~~~--~~------~~--------~d~~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  175 (407)
                      .+.........+..  .+      ++        .|+.|++||++... ..+..+...+..+....... .+++++.|+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~  274 (435)
T 4e54_B          195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT  274 (435)
T ss_dssp             TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred             cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence            86543222211111  11      11        18999999997653 23445555555444444433 5677899999


Q ss_pred             CCCCCCCCcCceee---EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc------ceEEEE
Q 046899          176 DKPLESPSIGARGK---YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA------DIHCVD  246 (407)
Q Consensus       176 i~i~d~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~v~~l~  246 (407)
                      +++||+...+....   ..+|...|++++|+|++ .+|++++.||.|++||++++.  ....+..|..      .+....
T Consensus       275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~  351 (435)
T 4e54_B          275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWD--CPLGLIPHPHRHFQHLTPIKAA  351 (435)
T ss_dssp             CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSS--SEEEECCCCCCCCSSSCCCBCE
T ss_pred             eeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCc--cceEEecccccccccceeEEEE
Confidence            99999987665443   35799999999999999 899999999999999999887  3444434332      223455


Q ss_pred             ecCCCCCEEEEEe------------CCCcEEEEeCCCCCCCCCCCceeeec-CCCCCEEEE-EEcCCCCCEEEEeeCCCe
Q 046899          247 WNPHDVNLILTGS------------ADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCV-QWSPDKSSVFGSSAEDGI  312 (407)
Q Consensus       247 ~~~~~~~~l~tg~------------~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v-~~~~~~~~ll~s~~~d~~  312 (407)
                      |+| ++.+++++.            .++.|++||..+      ++.+..+. +|...|.++ +|+|+|.+| |+|+ |++
T Consensus       352 ~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~------g~~~~~l~~~~~~~v~s~~~fspdg~~l-asg~-d~~  422 (435)
T 4e54_B          352 WHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS------GKMMCQLYDPESSGISSLNEFNPMGDTL-ASAM-GYH  422 (435)
T ss_dssp             ECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS------CCEEEEECCSSCCCCCCEEEECTTSSCE-EEEC-SSE
T ss_pred             EcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC------CcEEEEEeCCCCCcEEEEEEECCCCCEE-EEEc-CCc
Confidence            666 555555543            346799999998      88888765 588889888 699999965 6765 889


Q ss_pred             EEEEeCCCCCc
Q 046899          313 LNIWDHEKIGE  323 (407)
Q Consensus       313 i~vwd~~~~~~  323 (407)
                      |+|||++.++.
T Consensus       423 i~iW~~~~gk~  433 (435)
T 4e54_B          423 ILIWSQQEART  433 (435)
T ss_dssp             EEECCCC----
T ss_pred             EEEEECCcCee
Confidence            99999998654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.8e-30  Score=228.09  Aligned_cols=217  Identities=9%  Similarity=0.072  Sum_probs=168.5

Q ss_pred             CCCceEEEEEeCCC----CeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           82 HPGEVNRIRELPQN----SKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        82 h~~~v~~l~~~~~~----~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      |.+.|++|+|+| +    ++++++++.  .+++|++.+++.+.. ..+|       |+.|++|++.              
T Consensus       110 ~~~~v~sla~sp-d~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~-------d~~V~~~~~s--------------  165 (356)
T 2w18_A          110 EIREIRALFCSS-DDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLS-------DQQVEVMTFA--------------  165 (356)
T ss_dssp             SEEEEEEECC-------CCEEEEEEEE--EEEEEEETTTEEEEEESSST-------TCEEEEEEEC--------------
T ss_pred             cccceEEEEECC-CccccccEEEeCCC--eEEEEecCCCcEEEecccCC-------CCcEEEEEEC--------------
Confidence            567899999999 7    889999885  488999876554443 2223       6778888875              


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC---CCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP---SSAQEFCSVGDDSCLILWDARSGSTPAVK  233 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  233 (407)
                                               +.++.+..+..|...++.++|+|   ++ .+|++|+.|++|++||+++++  ++.
T Consensus       166 -------------------------~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk--~l~  217 (356)
T 2w18_A          166 -------------------------EDGGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ--LLK  217 (356)
T ss_dssp             -------------------------TTSCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC--EEE
T ss_pred             -------------------------CCCceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc--EEE
Confidence                                     33456677788999999999998   56 799999999999999999998  677


Q ss_pred             eecccC---cceEEEEecCCCCCEE------------EEEeCCCcEEEEeCCCCCCCCCCCceeee-----cCCCCCEEE
Q 046899          234 VEKAHN---ADIHCVDWNPHDVNLI------------LTGSADNSIHMFDRRKLTSDGVGSPIHKF-----EGHSAAVLC  293 (407)
Q Consensus       234 ~~~~~~---~~v~~l~~~~~~~~~l------------~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~h~~~v~~  293 (407)
                      ++.+|.   ..+.+++|+| ++.++            ++|+.|++|++||..+      ++.+..+     .+|...+.+
T Consensus       218 tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t------gk~l~v~~~~~p~Gh~~~~ls  290 (356)
T 2w18_A          218 KMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKT------TLSVGVMLYCLPPGQAGRFLE  290 (356)
T ss_dssp             EEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTT------TEEEEEEEECCCTTCCCCEEE
T ss_pred             EEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCC------CEEEEEEEeeccCCCcceeEc
Confidence            776654   3677889999 88876            6688999999999998      7776655     367666655


Q ss_pred             EEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccC-CCCcCcchhccccceeeeeEeeCccceeeeEEEeee
Q 046899          294 VQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIH-PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKV  372 (407)
Q Consensus       294 v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~-~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  372 (407)
                      ..++  +. ++|+++.|++|+|||+.+++.+.++.+|...+.. ++||||                  +.+|++|+.|++
T Consensus       291 g~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD------------------G~~LaSGS~D~T  349 (356)
T 2w18_A          291 GDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT------------------DSHLLAGQKDGN  349 (356)
T ss_dssp             EEEE--TT-EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS------------------SSEEEEECTTSC
T ss_pred             cccC--CC-EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC------------------CCEEEEEECCCc
Confidence            5554  55 5689999999999999999999999988877665 799999                  899999999999


Q ss_pred             EEEeec
Q 046899          373 LEIWRM  378 (407)
Q Consensus       373 i~iwd~  378 (407)
                      |||||+
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.3e-30  Score=234.31  Aligned_cols=252  Identities=17%  Similarity=0.214  Sum_probs=184.6

Q ss_pred             cCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEE
Q 046899           35 LVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLI  110 (407)
Q Consensus        35 ~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~v  110 (407)
                      +.-+..++.|.|   .+++++.|+.+++|-..     . ........+.+|.+.|++++|+|+ ++++|++|+.|++|++
T Consensus        12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~-----~-~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A           12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR-----N-GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             --CCEEEEEECGGGCEEEEEETTTEEEEEEEE-----T-TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEec-----C-CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            444677788877   48899999999999221     1 111223455689999999999863 4789999999999999


Q ss_pred             EeCcCCCC--cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCc--
Q 046899          111 WDVEAQPN--RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA--  186 (407)
Q Consensus       111 wd~~~~~~--~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--  186 (407)
                      ||+.++..  ...+.+|...+.                .+.+.+       . .....+++++.|+.+++||......  
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~----------------~v~~~p-------~-~~g~~lasgs~D~~i~lwd~~~~~~~~  141 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVN----------------SVCWAP-------H-DYGLILACGSSDGAISLLTYTGEGQWE  141 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCC----------------EEEECC-------T-TTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred             EECCCCcceEEEEccCCCCceE----------------EEEECC-------C-CCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence            99987532  223333332211                111111       1 0124578899999999999876532  


Q ss_pred             -eeeEeecccCEEEEEECCCC----------------CcEEEEEeCCCcEEEEEcCCCCC-CceeeecccCcceEEEEec
Q 046899          187 -RGKYLGHEDTVEDVQFCPSS----------------AQEFCSVGDDSCLILWDARSGST-PAVKVEKAHNADIHCVDWN  248 (407)
Q Consensus       187 -~~~~~~~~~~v~~l~~~~~~----------------~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~~  248 (407)
                       ...+.+|...|.+++|+|+.                ..+|++|+.|+.|++||++.... .....+.+|...|.+++|+
T Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s  221 (316)
T 3bg1_A          142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA  221 (316)
T ss_dssp             ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred             eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence             34556799999999999973                15899999999999999975421 2456778999999999999


Q ss_pred             CCCC----CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          249 PHDV----NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       249 ~~~~----~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      | ++    .+|++|+.||+|++||++.....  ......+..|...|.+++|+|++.+| |+++.|++|++|+...
T Consensus       222 p-~~~~~~~~las~s~D~~v~iw~~~~~~~~--~~~~~~~~~~~~~v~~v~~sp~g~~l-as~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          222 P-SIGLPTSTIASCSQDGRVFIWTCDDASSN--TWSPKLLHKFNDVVWHVSWSITANIL-AVSGGDNKVTLWKESV  293 (316)
T ss_dssp             C-CSSCSCCEEEEEETTCEEEEEECSSTTCC--CCBCCEEEECSSCEEEEEECTTTCCE-EEEESSSCEEEEEECT
T ss_pred             C-CCCCCCceEEEEcCCCeEEEEEccCcccc--chhhhhhhcCCCcEEEEEEcCCCCEE-EEEcCCCeEEEEEECC
Confidence            9 54    89999999999999999762110  11233456688999999999999965 7999999999999764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.3e-30  Score=243.84  Aligned_cols=265  Identities=16%  Similarity=0.197  Sum_probs=210.9

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      -.++.|+|++ + ++||+|. |++|+|||..+++....+..+..                        ...+..+.....
T Consensus       106 ~y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~------------------------~~~V~sv~fspd  158 (420)
T 4gga_A          106 YYLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQP------------------------GEYISSVAWIKE  158 (420)
T ss_dssp             TTCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCST------------------------TCCEEEEEECTT
T ss_pred             ccceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCC------------------------CCcEEEEEECCC
Confidence            3478899997 3 4888876 89999999998876554432211                        111111222223


Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH  243 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  243 (407)
                      ...+++++.|+.+++||..+++.+..+.+|...+.++++++   .+|++|+.|+.+++||.+.... ....+.+|...+.
T Consensus       159 g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~-~~~~~~~h~~~~~  234 (420)
T 4gga_A          159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVC  234 (420)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEE
T ss_pred             CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccce-eeEEeccccccee
Confidence            35688899999999999999999999999999999999864   6899999999999999987664 4667789999999


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe--eCCCeEEEEeCCCC
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGILNIWDHEKI  321 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~--~~d~~i~vwd~~~~  321 (407)
                      .+.|+| ++.++++++.|+.+++||.......  ...+.....|...|.+++|+|++..+++++  +.|++|++||+.++
T Consensus       235 ~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          235 GLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             eeeecC-CCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            999999 9999999999999999999873211  235677788999999999999998887764  47999999999998


Q ss_pred             CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE--EeeeEEEeeccccccCChHHHHHHHhhcccc
Q 046899          322 GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT--MVKVLEIWRMIDLIYRPEEEVLAELDKFKSH  399 (407)
Q Consensus       322 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~  399 (407)
                      +....+..+. .+..+.|+++                  +..+++++  .|+.|+|||+.      +++++..+.||.+.
T Consensus       312 ~~~~~~~~~~-~v~~~~~~~~------------------~~~lv~~sg~~d~~I~iwd~~------~~~~v~~l~gH~~~  366 (420)
T 4gga_A          312 ACLSAVDAHS-QVCSILWSPH------------------YKELISGHGFAQNQLVIWKYP------TMAKVAELKGHTSR  366 (420)
T ss_dssp             EEEEEEECSS-CEEEEEEETT------------------TTEEEEEECTTTCCEEEEETT------TCCEEEEECCCSSC
T ss_pred             ccceeecccc-ceeeeeecCC------------------CCeEEEEEecCCCEEEEEECC------CCcEEEEEcCCCCC
Confidence            8777665543 4555555555                  66666554  68999999998      78888999999999


Q ss_pred             eeEeeccC
Q 046899          400 IFGCDKSC  407 (407)
Q Consensus       400 v~~~~~s~  407 (407)
                      |++++||+
T Consensus       367 V~~l~~sp  374 (420)
T 4gga_A          367 VLSLTMSP  374 (420)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEcC
Confidence            99999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-30  Score=236.85  Aligned_cols=224  Identities=10%  Similarity=0.058  Sum_probs=168.7

Q ss_pred             CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899           95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN  174 (407)
Q Consensus        95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (407)
                      ++++|++|+.||+|++||+.+++....+...  .                ...+..++             .+++++.|+
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~--~----------------v~~~~~~~-------------~~~s~s~D~   95 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITTP--N----------------PRTGGEHP-------------AIISRGPCN   95 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEEE--C----------------CCTTCCCC-------------SEEEECSTT
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEecC--C----------------ceeeeeCC-------------ceEEecCCC
Confidence            6789999999999999999987655443210  0                00000000             044555555


Q ss_pred             CCCCCC---------CCCcCceeeEe-ecccCEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCCCceeee-cccCcc
Q 046899          175 GDKPLE---------SPSIGARGKYL-GHEDTVEDVQFCP--SSAQEFCSVGDDSCLILWDARSGSTPAVKVE-KAHNAD  241 (407)
Q Consensus       175 ~i~i~d---------~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~  241 (407)
                      .+++|+         ..+++.+..+. +|...|.+++|+|  ++ .+|++++.||.|++||+++++  ..... ..+...
T Consensus        96 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~~  172 (343)
T 3lrv_A           96 RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDS--QYIVHSAKSDVE  172 (343)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSC--EEEEECCCSSCC
T ss_pred             eEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCc--EEEEEecCCCCc
Confidence            555554         34555444444 6778999999999  88 899999999999999999887  44433 345668


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce-eeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI-HKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      +.+++|+| ++.+|++|+.||.|++||+++      ++.+ ..+.. |..+|++++|+|++.+| ++++ |+.|++||++
T Consensus       173 i~~~~~~p-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~l~fs~~g~~l-~s~~-~~~v~iwd~~  243 (343)
T 3lrv_A          173 YSSGVLHK-DSLLLALYSPDGILDVYNLSS------PDQASSRFPVDEEAKIKEVKFADNGYWM-VVEC-DQTVVCFDLR  243 (343)
T ss_dssp             CCEEEECT-TSCEEEEECTTSCEEEEESSC------TTSCCEECCCCTTSCEEEEEECTTSSEE-EEEE-SSBEEEEETT
T ss_pred             eEEEEECC-CCCEEEEEcCCCEEEEEECCC------CCCCccEEeccCCCCEEEEEEeCCCCEE-EEEe-CCeEEEEEcC
Confidence            99999999 999999999999999999998      6766 78888 99999999999999965 6888 5599999999


Q ss_pred             CCCccccccc---CCCcccC--CCCcCcchhccccceeeeeEeeCccceeeeEEE-eeeEEEeecc
Q 046899          320 KIGEKQDYGE---LKYPIIH--PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMI  379 (407)
Q Consensus       320 ~~~~~~~~~~---~~~~v~~--~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~  379 (407)
                      +.+....+..   +..++..  ++|+|+                  +.++++++. |+.|+||++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          244 KDVGTLAYPTYTIPEFKTGTVTYDIDDS------------------GKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             SSTTCBSSCCCBC-----CCEEEEECTT------------------SSEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceeecccccccccccceEEEECCC------------------CCEEEEecCCCCcEEEEEEc
Confidence            9877666554   4444443  777776                  889999998 9999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=4.4e-30  Score=241.87  Aligned_cols=276  Identities=13%  Similarity=0.156  Sum_probs=189.4

Q ss_pred             CCCeeEEEEeec---ccccCccceEEEEeecccCccc------CCcceeeEEEeeCC------------CceEEEEEeCC
Q 046899           36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEA------RSPFVKKFKTIIHP------------GEVNRIRELPQ   94 (407)
Q Consensus        36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~h~------------~~v~~l~~~~~   94 (407)
                      .-+..++.|.|+   +++++.|+.+++|-..   ...      ..+........+|.            +.|++++|+| 
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~---~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-  103 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDKGGRVVIFQQE---QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-  103 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEETTSEEEEEEEC---C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEEec---CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-
Confidence            346678899884   8899999999999332   111      11122234455798            8899999999 


Q ss_pred             CC--eEEEEeeCCCcEEEEeCcCCCCccc---ccCcCC------CCCCC-CCcEE--EEecccc-c-cccccCCCCCccc
Q 046899           95 NS--KIVATHTDSPDVLIWDVEAQPNRHA---VLGAAD------SHPDL-DQSVV--LWSIQDH-V-SALAAEPGSAKST  158 (407)
Q Consensus        95 ~~--~~l~tg~~dg~i~vwd~~~~~~~~~---~~~~~~------~~~~~-d~~i~--~w~~~~~-~-~~~~~~~~~~~~~  158 (407)
                      ++  .+|++++.||+|++||+.++.....   +..+..      ..... -..+.  -|.+... . .....+...+..+
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            55  7899999999999999986433211   000000      00000 00000  0000000 0 0112334444444


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCC-cCcee-------eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPS-IGARG-------KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~-------~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      ........++++ .|+.+++||+.. .+.+.       .+.+|...|.+++|+|+++.+|++|+.||.|++||++++...
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            444444567777 799999999984 43433       245799999999999997679999999999999999987721


Q ss_pred             --ceeeecccCc------------ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCC------
Q 046899          231 --AVKVEKAHNA------------DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAA------  290 (407)
Q Consensus       231 --~~~~~~~~~~------------~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~------  290 (407)
                        ....+..|..            .|.+++|+| ++++|++++. +.|++||++..     ++++..+.+|...      
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNME-----NRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCC-----SSCSCCEESCGGGTTTHHH
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCC-----ccccceeeccccccccccc
Confidence              1456667765            899999999 9999999998 99999999863     4678888887542      


Q ss_pred             ---------EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          291 ---------VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       291 ---------v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                               +..++|+|++++| ++|+.||.|++||+.+++.+
T Consensus       336 ~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTCCEE
T ss_pred             cccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCCcce
Confidence                     3349999999976 79999999999999986654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.5e-31  Score=248.82  Aligned_cols=220  Identities=17%  Similarity=0.245  Sum_probs=174.3

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA  159 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  159 (407)
                      .+|.+.|++++|+|.++++||+|+.||+|+|||+.+......                                      
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--------------------------------------  101 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV--------------------------------------  101 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC--------------------------------------
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc--------------------------------------
Confidence            468999999999996788999999999999999875211000                                      


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC---CCCCCceeeec
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR---SGSTPAVKVEK  236 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~  236 (407)
                                              .+....+ +|...|.+++|+|++ .+|++|+.||.|++||++   +++  ......
T Consensus       102 ------------------------~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~  153 (437)
T 3gre_A          102 ------------------------YSSSLTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQES--EVKFLN  153 (437)
T ss_dssp             ------------------------CSCSEEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETT--EEEEEE
T ss_pred             ------------------------cceeeec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCc--eeeccc
Confidence                                    0111222 588999999999988 899999999999999995   443  222222


Q ss_pred             c------------cCcceEEEE--ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEEEEEcCCC
Q 046899          237 A------------HNADIHCVD--WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSPDK  300 (407)
Q Consensus       237 ~------------~~~~v~~l~--~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~  300 (407)
                      .            +...+.++.  +++ ++.+|++|+.||.|++||+++      ++++..+..  |...|++++|+|++
T Consensus       154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~h~~~v~~~~~s~~~  226 (437)
T 3gre_A          154 CECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRT------LERLQIIENSPRHGAVSSICIDEEC  226 (437)
T ss_dssp             EEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTT------CCEEEEEECCGGGCCEEEEEECTTS
T ss_pred             cceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC------CeeeEEEccCCCCCceEEEEECCCC
Confidence            1            445566666  456 789999999999999999999      889999988  88999999999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCCcccccc-cCCCcccCC----CCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEE
Q 046899          301 SSVFGSSAEDGILNIWDHEKIGEKQDYG-ELKYPIIHP----AYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEI  375 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~----~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~i  375 (407)
                      .+| ++|+.||.|++||+++++.+..+. .+..+|+++    .|+++                  +..|++++.|++|+|
T Consensus       227 ~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~------------------~~~l~s~~~dg~i~i  287 (437)
T 3gre_A          227 CVL-ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN------------------SVIVVGGSSKTFLTI  287 (437)
T ss_dssp             CEE-EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT------------------EEEEEEESTTEEEEE
T ss_pred             CEE-EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC------------------ccEEEEEcCCCcEEE
Confidence            855 799999999999999988877765 677788888    55555                  778999999999999


Q ss_pred             eeccccccCChHHHHHHHhhcc
Q 046899          376 WRMIDLIYRPEEEVLAELDKFK  397 (407)
Q Consensus       376 wd~~~~~~~~~~~~~~~~~~h~  397 (407)
                      ||+.      +++++..+.+|.
T Consensus       288 wd~~------~~~~~~~~~~~~  303 (437)
T 3gre_A          288 WNFV------KGHCQYAFINSD  303 (437)
T ss_dssp             EETT------TTEEEEEEESSS
T ss_pred             EEcC------CCcEEEEEEcCC
Confidence            9998      455444444443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=3.1e-30  Score=236.76  Aligned_cols=277  Identities=17%  Similarity=0.189  Sum_probs=207.0

Q ss_pred             cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899           35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW  111 (407)
Q Consensus        35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  111 (407)
                      ..-|..++.|.|+   +++++.++.+++|-..      ...........+|.+.|++++|+| ++++|++|+.||.|++|
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~------~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS------GNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEE------TTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC------CCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEE
Confidence            3446778888875   7788899999999221      111113344457999999999999 88999999999999999


Q ss_pred             eCcCCCCcccc--cCcCCCCC------CC--------CCcEEEEecccccc-----cc-ccCCCCCcccccCCCCCcccc
Q 046899          112 DVEAQPNRHAV--LGAADSHP------DL--------DQSVVLWSIQDHVS-----AL-AAEPGSAKSTASGGANSKNAS  169 (407)
Q Consensus       112 d~~~~~~~~~~--~~~~~~~~------~~--------d~~i~~w~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~  169 (407)
                      |+.+++.....  ..+...+.      +.        ++.+.+|++.....     .+ ..+...+..+........+++
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence            99877533222  22322211      11        89999999987642     11 223344444444455567889


Q ss_pred             ccCCCCCCCCCC------------------CCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899          170 KSGGNGDKPLES------------------PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA  231 (407)
Q Consensus       170 ~~~~~~i~i~d~------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  231 (407)
                      ++.++.+++||+                  ..++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++  .
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--~  236 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKM--A  236 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTT--E
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc--e
Confidence            999999999994                  4677888888999999999999998 799999999999999999888  6


Q ss_pred             eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC----------------------------CCCCCce--
Q 046899          232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS----------------------------DGVGSPI--  281 (407)
Q Consensus       232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~----------------------------~~~~~~~--  281 (407)
                      ...+..|...|.+++|+| ++.++++| .|+.|++||++....                            +..+...  
T Consensus       237 ~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (372)
T 1k8k_C          237 VATLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS  314 (372)
T ss_dssp             EEEEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred             eEEEccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence            778889999999999999 88888887 899999999976100                            0001111  


Q ss_pred             ----eee-cCCCCCEEEEEEc-CCC---CCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          282 ----HKF-EGHSAAVLCVQWS-PDK---SSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       282 ----~~~-~~h~~~v~~v~~~-~~~---~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                          ..+ .+|..+|++++|+ ++|   . +|+||+.||.|++||+++++.+
T Consensus       315 ~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          315 AAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             ----CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEEEHHHHHHH
T ss_pred             ccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEEEEecChhHh
Confidence                333 4899999999977 554   6 5579999999999999875543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=2.4e-29  Score=238.13  Aligned_cols=294  Identities=13%  Similarity=0.147  Sum_probs=214.4

Q ss_pred             hhhhhhhccCceEEEeeeecccCCCeeEEEEee--cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEE
Q 046899           14 DRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGP--QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRE   91 (407)
Q Consensus        14 ~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~   91 (407)
                      -.+++|+....-....+.  .+.-+...+.|.|  .+++++.|+.+++|   +....     .......+|.+.|.+++|
T Consensus       142 g~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~~l~s~s~dg~i~vw---d~~~~-----~~~~~~~~h~~~v~~l~~  211 (464)
T 3v7d_B          142 KMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTVRVW---DIKKG-----CCTHVFEGHNSTVRCLDI  211 (464)
T ss_dssp             SCEEEEETTTTEEEEEEC--CCSSCEEEEEECSTTEEEEEETTSCEEEE---ETTTT-----EEEEEECCCSSCEEEEEE
T ss_pred             CcEEEEECCCCcEEEEEe--CCCcCEEEEEEcCCCEEEEEeCCCCEEEE---ECCCC-----cEEEEECCCCCccEEEEE
Confidence            346677755554433332  3455777888887  48899999999999   22111     123344479999999999


Q ss_pred             eC-CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccc---cccccCCCCCcccccCCCCCcc
Q 046899           92 LP-QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHV---SALAAEPGSAKSTASGGANSKN  167 (407)
Q Consensus        92 ~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  167 (407)
                      ++ .++++|++|+.||+|++||+.+............      ............   .....+...+...  ......+
T Consensus       212 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l  283 (464)
T 3v7d_B          212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD------YPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIV  283 (464)
T ss_dssp             EESSSCEEEEEEETTSCEEEEECCCCCCC------CC------SSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEE
T ss_pred             ecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC------cceEeeccCCCeEEEEEccCccceEEEE--cCCCCEE
Confidence            85 3778999999999999999987764432211100      001110000000   0111111111111  1223468


Q ss_pred             ccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEe
Q 046899          168 ASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDW  247 (407)
Q Consensus       168 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  247 (407)
                      ++++.++.+++||+.+++.+..+.+|...|.+++|+|++ .++++|+.||.|++||+++++  ....+.+|...|.+++|
T Consensus       284 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~  360 (464)
T 3v7d_B          284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRL  360 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEE
Confidence            889999999999999999999999999999999999998 799999999999999999988  68888899999999999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc-
Q 046899          248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD-  326 (407)
Q Consensus       248 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~-  326 (407)
                      ++   .+|++|+.||.|++||+++      ........ |...+..++|+|++.. +++|+ |+.|++||+++++.+.. 
T Consensus       361 ~~---~~l~s~s~dg~v~vwd~~~------~~~~~~~~-~~~~~~~~~~~~~~~~-l~~~~-dg~i~iwd~~~g~~~~~~  428 (464)
T 3v7d_B          361 SD---KFLVSAAADGSIRGWDAND------YSRKFSYH-HTNLSAITTFYVSDNI-LVSGS-ENQFNIYNLRSGKLVHAN  428 (464)
T ss_dssp             CS---SEEEEEETTSEEEEEETTT------CCEEEEEE-CTTCCCEEEEEECSSE-EEEEE-TTEEEEEETTTCCEEESC
T ss_pred             cC---CEEEEEeCCCcEEEEECCC------Cceeeeec-CCCCccEEEEEeCCCE-EEEec-CCeEEEEECCCCcEEehh
Confidence            74   7999999999999999998      56665554 6777888999999985 46777 99999999999888875 


Q ss_pred             cccCCCcccCCCCc
Q 046899          327 YGELKYPIIHPAYS  340 (407)
Q Consensus       327 ~~~~~~~v~~~~~s  340 (407)
                      +..+..+|++++|+
T Consensus       429 ~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          429 ILKDADQIWSVNFK  442 (464)
T ss_dssp             TTTTCSEEEEEEEE
T ss_pred             hccCCCcEEEEEec
Confidence            56677777777663

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.5e-31  Score=245.88  Aligned_cols=256  Identities=8%  Similarity=-0.003  Sum_probs=192.2

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC----CCcEEEEeccccc--cccc-cCCCC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL----DQSVVLWSIQDHV--SALA-AEPGS  154 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----d~~i~~w~~~~~~--~~~~-~~~~~  154 (407)
                      -...|.+|+|+| ||+++||++.|++|+  |....+   .+.+|...+-..    +|.+..|++....  ..+. .+...
T Consensus        14 ~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~   87 (588)
T 2j04_A           14 FEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCY   87 (588)
T ss_dssp             CSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCC
T ss_pred             hhccEEEEEECC-CCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCc
Confidence            467899999999 999999999999999  755443   334554433222    4555555555432  2222 22444


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc-----CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED-----TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST  229 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  229 (407)
                      +..++..+.+..+++++.+|.+++||...  .+..+. |..     .|.+++|+|+| ++|++|+.||+|++||+..+..
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l  163 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSE  163 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTT
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCcc
Confidence            55566666777799999999999999654  555555 655     59999999999 8999999999999999998752


Q ss_pred             --C---ceeee----cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC---ceeee-cCCCCCEEEEEE
Q 046899          230 --P---AVKVE----KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGS---PIHKF-EGHSAAVLCVQW  296 (407)
Q Consensus       230 --~---~~~~~----~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~---~~~~~-~~h~~~v~~v~~  296 (407)
                        +   ....+    .+|...|.+++|+| ++  +++++.|+.|++||+..      ..   ...++ .+|...|.+++|
T Consensus       164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~------~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          164 NTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSA------SSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             TCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCS------SSSCCCEEEEECCCSSCCCCEEE
T ss_pred             ccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCC------CccccceeeecccccCcEEEEEE
Confidence              1   13444    66788999999999 77  88889999999999987      44   34567 478899999999


Q ss_pred             cCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCC--cCcchhccccceeeeeEeeCccceeeeEEEeeeEE
Q 046899          297 SPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAY--SSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLE  374 (407)
Q Consensus       297 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~  374 (407)
                      +  |. .+|+++ +++|++||+...+......+|...++.++|  +||                  +..|+++..||+ +
T Consensus       235 s--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d------------------~~~La~a~edG~-k  291 (588)
T 2j04_A          235 V--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE------------------STILLMSNKTSY-K  291 (588)
T ss_dssp             E--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS------------------CEEEEECSSCEE-E
T ss_pred             E--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC------------------CCEEEEEcCCCC-E
Confidence            9  45 456776 799999999986653434379999999999  888                  556666666777 7


Q ss_pred             Eeecc
Q 046899          375 IWRMI  379 (407)
Q Consensus       375 iwd~~  379 (407)
                      +|...
T Consensus       292 lw~~d  296 (588)
T 2j04_A          292 VLLED  296 (588)
T ss_dssp             EEESS
T ss_pred             EEeec
Confidence            77653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-30  Score=246.31  Aligned_cols=288  Identities=9%  Similarity=0.025  Sum_probs=205.7

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC---CcccccCcCCCCCC--------C---------C-CcE-----
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP---NRHAVLGAADSHPD--------L---------D-QSV-----  136 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~--------~---------d-~~i-----  136 (407)
                      ..++.+++|+| ++++|+++. ++.|++||+.+++   .+.....+......        .         + ...     
T Consensus         4 ~~p~~~v~~s~-dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSR-DGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECS-SSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecC-CCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            35789999999 777776664 6799999999887   44443322210000        0         0 000     


Q ss_pred             -----EEEeccccccccccCCCCCcccccCCCCCcc-ccccCCCCCCCCCCC--CcCceeeEe--ecccCEEEEEECCCC
Q 046899          137 -----VLWSIQDHVSALAAEPGSAKSTASGGANSKN-ASKSGGNGDKPLESP--SIGARGKYL--GHEDTVEDVQFCPSS  206 (407)
Q Consensus       137 -----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~d~~--~~~~~~~~~--~~~~~v~~l~~~~~~  206 (407)
                           ..+...........+...+..+........+ ++++.++.+++||+.  .++.+..+.  .|...|.+++|+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence                 0000000000011111223333444444554 778899999999998  888888876  567899999999999


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecCCC---CCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899          207 AQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNPHD---VNLILTGSADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       207 ~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~~~---~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                       .+|++|+.||.|++|++.++...  ....+.+|...|.+++|+| +   +++|++|+.|+.|++||++.      ++.+
T Consensus       162 -~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~------~~~~  233 (450)
T 2vdu_B          162 -TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQ------CFIV  233 (450)
T ss_dssp             -SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESC------TTCE
T ss_pred             -CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCC------Ccee
Confidence             89999999999999999887632  2236678999999999999 7   88999999999999999998      7778


Q ss_pred             ee-ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCC-------------------------Cccc
Q 046899          282 HK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK-------------------------YPII  335 (407)
Q Consensus       282 ~~-~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-------------------------~~v~  335 (407)
                      .. +.+|...|++++|+ ++.+| ++++.|++|++||+++++.+..+..+.                         ..+.
T Consensus       234 ~~~~~~h~~~v~~~~~s-d~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          234 DKWLFGHKHFVSSICCG-KDYLL-LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEECCCCSSCEEEEEEC-STTEE-EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eeeecCCCCceEEEEEC-CCCEE-EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            77 56899999999999 88855 799999999999999988776664321                         1222


Q ss_pred             CCCCcCcchhccccceeeeeEeeCccceeeeEE-EeeeEEEeec--cccccCChH---HHHHHHhhcccceeEeeccC
Q 046899          336 HPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRM--IDLIYRPEE---EVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       336 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~--~~~~~~~~~---~~~~~~~~h~~~v~~~~~s~  407 (407)
                      +++|+|                  .+..|++++ .++.|+||++  .      .+   +++..+.+| +.|.+++|++
T Consensus       312 ~i~~~~------------------~~~~l~~~~~~d~~i~iw~~~~~------~~~~l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          312 KIIKSK------------------NLPFVAFFVEATKCIIILEMSEK------QKGDLALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             EEEECS------------------SSSEEEEEETTCSEEEEEEECSS------STTCEEEEEEEECS-SCEEEEEEET
T ss_pred             EEEEeC------------------CCCEEEEEECCCCeEEEEEeccC------CCCceeeccEeccC-CceEEEEecC
Confidence            333333                  377888888 8999999999  4      33   555667777 7899999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=5.9e-30  Score=234.55  Aligned_cols=273  Identities=15%  Similarity=0.143  Sum_probs=193.0

Q ss_pred             ecccCCCeeEEEEeec---ccccCc-------cceEEEEeecccCcccCC-----cceeeEEEeeCCCceEEEEEeCCCC
Q 046899           32 NHNLVWPSLSCRWGPQ---LEQATY-------KNRQRLYLSEQFNEEARS-----PFVKKFKTIIHPGEVNRIRELPQNS   96 (407)
Q Consensus        32 ~~~~~~p~~s~~~~~~---~~~~~~-------~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~~~~~~   96 (407)
                      .+++.+|.+++.|.|+   +++|+.       ++.+++|...   .....     .......+.+|...|.++++.+   
T Consensus        10 ~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~---~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---   83 (365)
T 4h5i_A           10 SYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVD---PTKDTEKEQFHILSEFALEDNDDSPTAIDASK---   83 (365)
T ss_dssp             EEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEEC---TTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---
T ss_pred             ecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEc---CCCcceeeeeeeeeEEEccCCCCceEEEEeCC---
Confidence            3467889999999985   666543       4468999432   22111     1122234456888999998754   


Q ss_pred             eEEEEe-----------eCCCcEEEEeCcCCCCccccc---------CcC------CCCCC----------CCCcEEEEe
Q 046899           97 KIVATH-----------TDSPDVLIWDVEAQPNRHAVL---------GAA------DSHPD----------LDQSVVLWS  140 (407)
Q Consensus        97 ~~l~tg-----------~~dg~i~vwd~~~~~~~~~~~---------~~~------~~~~~----------~d~~i~~w~  140 (407)
                      +.+++|           +.|+.+|+|++.+........         .+.      .+.|+          .|++|++||
T Consensus        84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd  163 (365)
T 4h5i_A           84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID  163 (365)
T ss_dssp             TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred             CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence            345544           568889999987654221110         000      01111          178999999


Q ss_pred             cccccccccc-CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee--eEeecccCEEEEEECCCCCcEEEEEeCCC
Q 046899          141 IQDHVSALAA-EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG--KYLGHEDTVEDVQFCPSSAQEFCSVGDDS  217 (407)
Q Consensus       141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~s~~~dg  217 (407)
                      +.+....... +...+..+...+....+++++ ++.+.+|+..+++.+.  ....|...|.+++|+|++ .++++++.|+
T Consensus       164 ~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~  241 (365)
T 4h5i_A          164 PSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKK  241 (365)
T ss_dssp             TTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESS
T ss_pred             CCCCcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCC
Confidence            9887543322 333344444444444566665 5566677666666543  344688899999999999 8899998887


Q ss_pred             ----cEEEEEcCCCCCCc--eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCC
Q 046899          218 ----CLILWDARSGSTPA--VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAA  290 (407)
Q Consensus       218 ----~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~  290 (407)
                          .+++||+.......  ...+..|...|++++|+| ++++||+|+.|+.|+|||+++      ++++.++ .+|..+
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~------~~~~~~~~~gH~~~  314 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKD------LSMSKIFKQAHSFA  314 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEEEEETTSSSSC
T ss_pred             cceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCC------CcEEEEecCcccCC
Confidence                68889987765221  345668899999999999 999999999999999999998      8888875 789999


Q ss_pred             EEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      |++|+|+|+|++| ||||.|++|+|||+..
T Consensus       315 V~~v~fSpdg~~l-aS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          315 ITEVTISPDSTYV-ASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEEECTTSCEE-EEEETTSEEEEEECCT
T ss_pred             EEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Confidence            9999999999965 7999999999999964

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=3e-29  Score=231.49  Aligned_cols=278  Identities=12%  Similarity=0.104  Sum_probs=201.0

Q ss_pred             hhccCceEEEeeeecccCCCeeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC
Q 046899           19 WKSLVPVLYDWLANHNLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ   94 (407)
Q Consensus        19 w~~~~~~~y~~l~~~~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~   94 (407)
                      |......++..+.  ...-+..++.|.|.    +++++.|+.+++|   +...   ..........+|.+.|.+++|+|.
T Consensus        58 ~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iw---d~~~---~~~~~~~~~~~h~~~v~~~~~~~~  129 (383)
T 3ei3_B           58 RSLKSYKLHRTAS--PFDRRVTSLEWHPTHPTTVAVGSKGGDIILW---DYDV---QNKTSFIQGMGPGDAITGMKFNQF  129 (383)
T ss_dssp             HHHTTCEEEEEEC--CCSSCEEEEEECSSCTTEEEEEEBTSCEEEE---ETTS---TTCEEEECCCSTTCBEEEEEEETT
T ss_pred             ccccccceEEecc--CCCCCEEEEEECCCCCCEEEEEcCCCeEEEE---eCCC---cccceeeecCCcCCceeEEEeCCC
Confidence            3334444444443  33456777888874    7899999999999   2221   111222233469999999999997


Q ss_pred             CCeEEEEeeCCCcEEEEeCcCCCCcccccCcC---CCC------CCC--------CCcEEEEeccccc-cccccCCCCCc
Q 046899           95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA---DSH------PDL--------DQSVVLWSIQDHV-SALAAEPGSAK  156 (407)
Q Consensus        95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~---~~~------~~~--------d~~i~~w~~~~~~-~~~~~~~~~~~  156 (407)
                      ++++|++|+.|+.|++||+.+. ....+..+.   ..+      ++.        |+.+.+||+.... ..+..+...+.
T Consensus       130 ~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~  208 (383)
T 3ei3_B          130 NTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVT  208 (383)
T ss_dssp             EEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEE
Confidence            7899999999999999999863 333332222   111      111        8999999996432 23444555555


Q ss_pred             ccccCCCCC-ccccccCCCCCCCCCCCC----cCceeeEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          157 STASGGANS-KNASKSGGNGDKPLESPS----IGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       157 ~~~~~~~~~-~~~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      .+....... .+++++.|+.+++||+.+    +..+..+ +|...|.+++|+| ++ .+|++++.|+.|++||++++.. 
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~-  285 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSK-  285 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTS-
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcc-
Confidence            555555555 688899999999999987    4555555 7999999999999 88 8999999999999999998773 


Q ss_pred             ceeeecccC-----------------cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCE
Q 046899          231 AVKVEKAHN-----------------ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAV  291 (407)
Q Consensus       231 ~~~~~~~~~-----------------~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v  291 (407)
                       ...+..|.                 ..+..++|+| ++++  +|+.||.|++||+++      ++++.++.+  |...+
T Consensus       286 -~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~------~~~~~~l~~~~~~~~~  355 (383)
T 3ei3_B          286 -PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANS------GGLVHQLRDPNAAGII  355 (383)
T ss_dssp             -CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTT------CCEEEEECBTTBCSCC
T ss_pred             -ccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCC------CceeeeecCCCCCceE
Confidence             33333332                 3344566777 5555  778999999999998      888999987  56778


Q ss_pred             EEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          292 LCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       292 ~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      ..++|+|++++| ++|+ |+.|++||+++
T Consensus       356 ~~~~~s~~g~~l-~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          356 SLNKFSPTGDVL-ASGM-GFNILIWNRED  382 (383)
T ss_dssp             CEEEECTTSSEE-EEEE-TTEEEEEECC-
T ss_pred             EEEEEecCccEE-EEec-CCcEEEEecCC
Confidence            888999999955 6887 99999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=4.8e-29  Score=231.51  Aligned_cols=331  Identities=12%  Similarity=0.107  Sum_probs=207.4

Q ss_pred             hhhhhhhhccCceEEEeeeecccCCCeeEEEEee-c---ccccCccceEEEEeecccCcccCCcceeeEEE--------e
Q 046899           13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGP-Q---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKT--------I   80 (407)
Q Consensus        13 ~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~   80 (407)
                      +..+++|..........+..  +.-+...+.|.| +   +++++.|+.+++|   +...............        .
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw---~~~~~~~~~~~~~~~~~~~~~~~~~   96 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERI--HGGGINTLDIEPVEGRYMLSGGSDGVIVLY---DLENSSRQSYYTCKAVCSIGRDHPD   96 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCC--CSSCEEEEEECTTTCCEEEEEETTSCEEEE---ECCCCSSSSCEEECEEEEECTTCTT
T ss_pred             cCcceeeccccCcceeeeec--cCCcEEEEEEecCCCCEEEEEcCCCeEEEE---ECCCCcccceEeccccccccccccc
Confidence            44456666544333333333  445777889987 3   7889999999999   3332222211111111        1


Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCC--------CCCC--------CCCcEEEEecccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAD--------SHPD--------LDQSVVLWSIQDH  144 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~--------~d~~i~~w~~~~~  144 (407)
                      +|.+.|.+++|+|.++++|++++.||.|++||+.+++....+.....        ..++        .++.+.+||+.++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  176 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG  176 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence            49999999999997888999999999999999998765443321110        0001        1899999999876


Q ss_pred             cc--ccccCCCCCcccccCCCCCc-cccccCCCCCCCCCCCCcC-ceeeE---------------eecccCEEEEEECCC
Q 046899          145 VS--ALAAEPGSAKSTASGGANSK-NASKSGGNGDKPLESPSIG-ARGKY---------------LGHEDTVEDVQFCPS  205 (407)
Q Consensus       145 ~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~-~~~~~---------------~~~~~~v~~l~~~~~  205 (407)
                      ..  .+..+...+..+........ +++++.++.+++||+.... .+..+               .+|...|.+++|+|+
T Consensus       177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence            43  33344444555555555553 7789999999999997765 33333               568899999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-----CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCc
Q 046899          206 SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-----NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSP  280 (407)
Q Consensus       206 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~  280 (407)
                      + .+|++++.||.|++||+++++.  ......+     ...+....... ....+++++.++.|++||+++      +++
T Consensus       257 ~-~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~d~~~------~~~  326 (408)
T 4a11_B          257 G-LHLLTVGTDNRMRLWNSSNGEN--TLVNYGKVCNNSKKGLKFTVSCG-CSSEFVFVPYGSTIAVYTVYS------GEQ  326 (408)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCCB--CCCCCCCCCCCCSSCCCCEECCS-SSSCEEEEEETTEEEEEETTT------CCE
T ss_pred             C-CEEEEecCCCeEEEEECCCCcc--ceeccccccccccccceeEEecC-CCceEEEEecCCEEEEEECcC------Ccc
Confidence            8 8999999999999999998773  2222111     11222222222 456677778899999999999      899


Q ss_pred             eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCc
Q 046899          281 IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH  360 (407)
Q Consensus       281 ~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~  360 (407)
                      +..+.+|...|++++|+|++++| ++++.||.|++||+++.+.+.........   ..+++.                 .
T Consensus       327 ~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~-----------------~  385 (408)
T 4a11_B          327 ITMLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPA-----------------F  385 (408)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEEECC----------------------------------------
T ss_pred             eeeeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEeCCCCCccCCCCceEec---cccccc-----------------c
Confidence            99999999999999999999865 79999999999999998776554433221   111111                 1


Q ss_pred             cceeeeEEEeeeEEEeecc
Q 046899          361 GRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       361 ~~~i~~~~~d~~i~iwd~~  379 (407)
                      .....+...++.+++|+..
T Consensus       386 ~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          386 EDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             -------------------
T ss_pred             ceeecccCccCceeecCCc
Confidence            3334466678899999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=6.8e-30  Score=233.33  Aligned_cols=281  Identities=13%  Similarity=0.112  Sum_probs=185.4

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC----------C---CCCCCCCcEEEEecccccc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA----------D---SHPDLDQSVVLWSIQDHVS  146 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~----------~---~~~~~d~~i~~w~~~~~~~  146 (407)
                      .+|.+.|++++|+| ++++||+|+.++ +++||+.+...........          .   .....++++++||+.++..
T Consensus        16 ~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~   93 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD   93 (355)
T ss_dssp             ---CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred             ccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence            47999999999999 889999998775 8899987654332211100          0   0011178999999987644


Q ss_pred             cccc-CCCCCcccccCCCCCccccccCCCCCCCCCCCCc-CceeeEeecccCEEEEEECCCCCcEEEE--EeCCCcEEEE
Q 046899          147 ALAA-EPGSAKSTASGGANSKNASKSGGNGDKPLESPSI-GARGKYLGHEDTVEDVQFCPSSAQEFCS--VGDDSCLILW  222 (407)
Q Consensus       147 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~s--~~~dg~i~iw  222 (407)
                      .... ....+..+...   ........++.+++||+.+. +.+..+..   +...+++++ .  +++.  |+.||.|++|
T Consensus        94 ~~~~~~~~~v~~v~~~---~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~--~la~~sg~~~g~v~iw  164 (355)
T 3vu4_A           94 VSRIKVDAPVKDLFLS---REFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-G--LLVYSNEFNLGQIHIT  164 (355)
T ss_dssp             EEEEECSSCEEEEEEC---SSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-T--EEEEEESSCTTCEEEE
T ss_pred             EEEEECCCceEEEEEc---CCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc-c--EEEEeCCCcCcEEEEE
Confidence            3222 12222222221   12233446788999999888 77766655   444556666 3  4444  6889999999


Q ss_pred             EcCCCC--------------CCceeeecccCcceEEEEecCCCCCEEEEEeCCCc-EEEEeCCCCCCCCCCCceeeec-C
Q 046899          223 DARSGS--------------TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS-IHMFDRRKLTSDGVGSPIHKFE-G  286 (407)
Q Consensus       223 d~~~~~--------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~-i~vwd~~~~~~~~~~~~~~~~~-~  286 (407)
                      |++++.              .+....+.+|...|++++|+| ++++|++|+.||+ |++||+++      ++++.++. +
T Consensus       165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~------~~~~~~~~~g  237 (355)
T 3vu4_A          165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTED------GVLVREFRRG  237 (355)
T ss_dssp             ECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTT------CCEEEEEECT
T ss_pred             ECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcC
Confidence            998754              111567789999999999999 9999999999998 99999998      89999998 5


Q ss_pred             -CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc--ccccC-CCcccCCCCcCcchhccccc--eeeeeEeeCc
Q 046899          287 -HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ--DYGEL-KYPIIHPAYSSDMLDIETKL--LTSIGMHLIH  360 (407)
Q Consensus       287 -h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~--~~~~~-~~~v~~~~~s~d~~~~~~~~--~~~~~~~~~~  360 (407)
                       |...|++++|+|++.+| ++++.|++|++||++......  .+... ........++.....+....  -.......+.
T Consensus       238 ~h~~~v~~~~~s~~~~~l-~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d  316 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKL-AVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE  316 (355)
T ss_dssp             TCCSCEEEEEECTTSCEE-EEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred             CCCCcEEEEEECCCCCEE-EEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence             99999999999999965 799999999999998653221  11110 00000000000000000000  0012344444


Q ss_pred             cceeeeEEEeeeEEEeecc
Q 046899          361 GRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       361 ~~~i~~~~~d~~i~iwd~~  379 (407)
                      +..|++|+.||.+++|++.
T Consensus       317 ~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          317 SSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             SEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEEE
Confidence            7899999999999999987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=5.2e-29  Score=225.86  Aligned_cols=270  Identities=16%  Similarity=0.223  Sum_probs=196.5

Q ss_pred             cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEE
Q 046899           35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLI  110 (407)
Q Consensus        35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~v  110 (407)
                      +.-+..++.|.|+   +++++.|+.+++|-   +.... ..........+|.+.|++++|+|. ++++|++|+.||.|++
T Consensus        10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~---~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A           10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFK---LDKDT-SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEE---ECSSS-CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cccceeEEEEcCCCCEEEEeeCCCeEEEEE---CCCCC-CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            4457778899874   88999999999992   22211 111223344579999999999985 4889999999999999


Q ss_pred             EeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC--CCccccccCCCCCCCCCCCCcCcee
Q 046899          111 WDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA--NSKNASKSGGNGDKPLESPSIGARG  188 (407)
Q Consensus       111 wd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~~~~  188 (407)
                      ||+.++.......          ..-.+..+.       .+...+..+.....  ...+++++.++.+++||+.+++.+.
T Consensus        86 wd~~~~~~~~~~~----------~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           86 WEEDPDQEECSGR----------RWNKLCTLN-------DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             EEECTTSCTTSSC----------SEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred             EecCCCccccccc----------Ccceeeeec-------ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence            9998764321100          000000010       11111111222222  3457888899999999998887665


Q ss_pred             eEe-------------ecccCEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC-
Q 046899          189 KYL-------------GHEDTVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV-  252 (407)
Q Consensus       189 ~~~-------------~~~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-  252 (407)
                      .+.             .|...+.+++|+|+  .+.+|++++.|+.+.+|+...+.......+.+|...|++++|+| ++ 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~  227 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIG  227 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSS
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCC
Confidence            544             57889999999997  23799999999999888887776434667788999999999999 66 


Q ss_pred             ---CEEEEEeCCCcEEEEeCCCCCCC----------------------------------------CCCCceeeecCCCC
Q 046899          253 ---NLILTGSADNSIHMFDRRKLTSD----------------------------------------GVGSPIHKFEGHSA  289 (407)
Q Consensus       253 ---~~l~tg~~dg~i~vwd~~~~~~~----------------------------------------~~~~~~~~~~~h~~  289 (407)
                         ++|++|+.||.|++||++.....                                        ...+++..+.+|..
T Consensus       228 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  307 (351)
T 3f3f_A          228 RWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG  307 (351)
T ss_dssp             CSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred             CcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence               89999999999999999862100                                        00156777889999


Q ss_pred             CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899          290 AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY  327 (407)
Q Consensus       290 ~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~  327 (407)
                      .|++++|+|++++| ++++.||.|++||+.+++....+
T Consensus       308 ~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          308 EVWSVSWNLTGTIL-SSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CEEEEEECSSSCCE-EEEETTSCEEEEEECTTSCEEEE
T ss_pred             cEEEEEEcCCCCEE-EEecCCCcEEEEecCcCcchhhe
Confidence            99999999999965 79999999999999987655443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=227.46  Aligned_cols=264  Identities=17%  Similarity=0.209  Sum_probs=205.0

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN  164 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  164 (407)
                      ..++|+|++ ++ +||+|. |++|+|||+.++++...+..+...                        ..+..+......
T Consensus        27 y~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~------------------------~~V~~v~~~~~~   79 (318)
T 4ggc_A           27 YLNLVDWSS-GN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPG------------------------EYISSVAWIKEG   79 (318)
T ss_dssp             TCBCEEECT-TS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTT------------------------CCEEEEEECTTS
T ss_pred             cceEEEECC-CC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCC------------------------CeEEEEEECCCC
Confidence            368899998 44 787765 899999999988766655432211                        111112222233


Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEE
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHC  244 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  244 (407)
                      ..+++++.|+.+++|+..+++.+..+.+|...+.++.+.+   .++++++.++.+++|+...... ....+.+|...+.+
T Consensus        80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  155 (318)
T 4ggc_A           80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVCG  155 (318)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEE
T ss_pred             CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCce-eEEEEcCccCceEE
Confidence            5688899999999999999999999999999998877654   6899999999999999987764 46677899999999


Q ss_pred             EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE--EEeeCCCeEEEEeCCCCC
Q 046899          245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF--GSSAEDGILNIWDHEKIG  322 (407)
Q Consensus       245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll--~s~~~d~~i~vwd~~~~~  322 (407)
                      +.+++ +++++++++.||.|++||+++....  .........|...|.+++++|++..++  ++++.+++|++||.+...
T Consensus       156 ~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~  232 (318)
T 4ggc_A          156 LRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA  232 (318)
T ss_dssp             EEECT-TSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred             EEEcC-CCCEEEEEecCcceeEEECCCCccc--ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence            99999 8999999999999999999873211  234456667889999999999988765  466788999999998865


Q ss_pred             cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE--EEeeeEEEeeccccccCChHHHHHHHhhcccce
Q 046899          323 EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL--TMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHI  400 (407)
Q Consensus       323 ~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  400 (407)
                      .... ..+..++..+.|+++                  +..++++  +.|++|+|||+.      +++++..+.+|.+.|
T Consensus       233 ~~~~-~~~~~~v~~~~~~~~------------------~~~~~~~sg~~d~~i~iwd~~------~~~~~~~l~gH~~~V  287 (318)
T 4ggc_A          233 CLSA-VDAHSQVCSILWSPH------------------YKELISGHGFAQNQLVIWKYP------TMAKVAELKGHTSRV  287 (318)
T ss_dssp             EEEE-EECSSCEEEEEEETT------------------TTEEEEEECTTTCCEEEEETT------TCCEEEEECCCSSCE
T ss_pred             cccc-ccceeeeeeeeeccc------------------ccceEEEEEcCCCEEEEEECC------CCcEEEEEcCCCCCE
Confidence            5443 334555555566555                  5555544  478999999998      788889999999999


Q ss_pred             eEeeccC
Q 046899          401 FGCDKSC  407 (407)
Q Consensus       401 ~~~~~s~  407 (407)
                      ++++||+
T Consensus       288 ~~l~~sp  294 (318)
T 4ggc_A          288 LSLTMSP  294 (318)
T ss_dssp             EEEEECT
T ss_pred             EEEEEcC
Confidence            9999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-29  Score=228.92  Aligned_cols=269  Identities=8%  Similarity=-0.041  Sum_probs=190.8

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      .+++++.|+.+++|-   ....  .    ....+. .+.|+++.|+| .   +++|+.|++|++|+...           
T Consensus        50 ~l~sg~~Dg~v~iwd---~~~~--~----~~~~~~-~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~-----------  104 (343)
T 3lrv_A           50 VCMCRCEDGALHFTQ---LKDS--K----TITTIT-TPNPRTGGEHP-A---IISRGPCNRLLLLYPGN-----------  104 (343)
T ss_dssp             EEEEEEETTEEEEEE---ESSS--S----CEEEEE-EECCCTTCCCC-S---EEEECSTTEEEEEETTT-----------
T ss_pred             EEEEECCCCcEEEEE---CCCC--c----EEEEEe-cCCceeeeeCC-c---eEEecCCCeEEEEEccC-----------
Confidence            488999999999992   2111  1    111111 46788888888 4   99999999999999753           


Q ss_pred             CCCCCCCCcEEEEecccccccc---ccCCCCCcccccCC--CCCccccccCCCCCCCCCCCCcCceeeEee-cccCEEEE
Q 046899          127 DSHPDLDQSVVLWSIQDHVSAL---AAEPGSAKSTASGG--ANSKNASKSGGNGDKPLESPSIGARGKYLG-HEDTVEDV  200 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l  200 (407)
                              .+.+|++.......   ..+...+..+....  ....+++++.|+.+++||+.+++.+..... |...|.++
T Consensus       105 --------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~  176 (343)
T 3lrv_A          105 --------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG  176 (343)
T ss_dssp             --------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEE
T ss_pred             --------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEE
Confidence                    44556655443111   11222333344444  456688899999999999999988766643 55689999


Q ss_pred             EECCCCCcEEEEEeCCCcEEEEEcCCCCCCce-eeecc-cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 046899          201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAV-KVEKA-HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG  278 (407)
Q Consensus       201 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~  278 (407)
                      +|+|++ .+|++|+.||.|++||+++++.  . ..+.. |...|++++|+| ++.+|++++ |+.|++||++.      .
T Consensus       177 ~~~pdg-~~lasg~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~------~  245 (343)
T 3lrv_A          177 VLHKDS-LLLALYSPDGILDVYNLSSPDQ--ASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRK------D  245 (343)
T ss_dssp             EECTTS-CEEEEECTTSCEEEEESSCTTS--CCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTS------S
T ss_pred             EECCCC-CEEEEEcCCCEEEEEECCCCCC--CccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCC------C
Confidence            999999 8999999999999999999883  4 55666 999999999999 899999999 55999999998      5


Q ss_pred             CceeeecC---CCCCEE--EEEEcCCCCCEEEEeeC-CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccccee
Q 046899          279 SPIHKFEG---HSAAVL--CVQWSPDKSSVFGSSAE-DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLT  352 (407)
Q Consensus       279 ~~~~~~~~---h~~~v~--~v~~~~~~~~ll~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  352 (407)
                      +.+..+..   |...+.  +++|+|++++| ++++. |+.|++|++.+....-..    .++..+.|++.          
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~----------  310 (343)
T 3lrv_A          246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNM-IAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSD----------  310 (343)
T ss_dssp             TTCBSSCCCBC-----CCEEEEECTTSSEE-EEEETTTTEEEEEEECTTTCSEEE----EEEEECCC-------------
T ss_pred             CcceeecccccccccccceEEEECCCCCEE-EEecCCCCcEEEEEEcccccceEe----cCceeEecCcc----------
Confidence            55544443   444444  69999999976 57777 999999999765432221    44555666551          


Q ss_pred             eeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          353 SIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       353 ~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                           .+....+++++.|+.++++-..
T Consensus       311 -----~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          311 -----TADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             ------CCCCEEEEEEETTEEEEEEEC
T ss_pred             -----ccccceeEEEecCCceEEEEec
Confidence                 1125678888888888887543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=6.4e-29  Score=227.29  Aligned_cols=286  Identities=14%  Similarity=0.121  Sum_probs=213.8

Q ss_pred             cCCCeeEEEEeec------ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcE
Q 046899           35 LVWPSLSCRWGPQ------LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDV  108 (407)
Q Consensus        35 ~~~p~~s~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i  108 (407)
                      +.-+...+.|.|+      +++++.|+.+++|..   ..   ..........+|.+.|++++|+| ++++|++|+.||.|
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~---~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v  110 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV---QD---SGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTA  110 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEE---CT---TSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEc---CC---CCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcE
Confidence            4456777888774      789999999999922   11   11222245557999999999999 88999999999999


Q ss_pred             EEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee
Q 046899          109 LIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG  188 (407)
Q Consensus       109 ~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~  188 (407)
                      ++||+.+++.... ..|...       +.         .+...        .......+++++.++.+++||+.+++.+.
T Consensus       111 ~iwd~~~~~~~~~-~~~~~~-------v~---------~~~~~--------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  165 (368)
T 3mmy_A          111 KMWDLSSNQAIQI-AQHDAP-------VK---------TIHWI--------KAPNYSCVMTGSWDKTLKFWDTRSSNPMM  165 (368)
T ss_dssp             EEEETTTTEEEEE-EECSSC-------EE---------EEEEE--------ECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred             EEEEcCCCCceee-ccccCc-------eE---------EEEEE--------eCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence            9999987654332 222111       11         11110        02223457888999999999999999998


Q ss_pred             eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCC----EEEEEeCCCcE
Q 046899          189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVN----LILTGSADNSI  264 (407)
Q Consensus       189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~----~l~tg~~dg~i  264 (407)
                      .+..+. .+.++.+.+   ..+++++.++.+++||++............+...+.++.+.+ +..    .+++|+.||.|
T Consensus       166 ~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i  240 (368)
T 3mmy_A          166 VLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRV  240 (368)
T ss_dssp             EEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEE
T ss_pred             EEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcE
Confidence            887664 677777765   467888889999999998776332333333445566666655 333    39999999999


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCC------------CEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY  332 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~------------~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  332 (407)
                      ++||++....   ...+..+..|..            +|++++|+|++++| ++++.||.|++||+++++.+..+..|..
T Consensus       241 ~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (368)
T 3mmy_A          241 AIHYINPPNP---AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDARTKLKTSEQLDQ  316 (368)
T ss_dssp             EEEESSCSCH---HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred             EEEecCCCCc---cccceeeeeeecccccccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCCCcEEEEecCCCC
Confidence            9999998210   156777887776            79999999999966 6999999999999999999999999999


Q ss_pred             cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          333 PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       333 ~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +|++++|+||                  +..|++++.|+..+.|++.
T Consensus       317 ~v~~~~~s~~------------------g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          317 PISACCFNHN------------------GNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             CEEEEEECTT------------------SSCEEEEECCCSTTCGGGC
T ss_pred             CceEEEECCC------------------CCeEEEEeccccccccccc
Confidence            9999999999                  8899999999865555543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=5.8e-28  Score=226.43  Aligned_cols=266  Identities=18%  Similarity=0.296  Sum_probs=196.2

Q ss_pred             cccCCCeeEEEEeec----ccccCccceEEEEeecccCcccC-----CcceeeEEEeeCCCceEEEEEeCCCCeEEEEee
Q 046899           33 HNLVWPSLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEAR-----SPFVKKFKTIIHPGEVNRIRELPQNSKIVATHT  103 (407)
Q Consensus        33 ~~~~~p~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~  103 (407)
                      ..+.-+...+.|.|.    +++++.++.+++|-..   ....     ..........+|.+.|.+|+|+|....+|++|+
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYT---KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGG---GSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECC---CcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344556677888773    7888999999999332   2100     112334555689999999999994444999999


Q ss_pred             CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC-CCCccccccCCCCCCCCCCC
Q 046899          104 DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG-ANSKNASKSGGNGDKPLESP  182 (407)
Q Consensus       104 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~d~~  182 (407)
                      .||.|++||+.+..........          ...         +..+...+..+.... ....+++++.++.+++||+.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~----------~~~---------~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDA----------KNI---------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEEC----------SEE---------ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCCeEEEEeCCCCCCCCceecc----------cee---------ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            9999999999875322110000          000         001111111111111 12456778899999999998


Q ss_pred             Cc---CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe
Q 046899          183 SI---GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS  259 (407)
Q Consensus       183 ~~---~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~  259 (407)
                      ..   +.+..+..|...|++++|+|++..+|++|+.||.|++||+++... ....+..|...|.+++|+|.+..+|++++
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence            76   577788899999999999999866899999999999999998543 46677789999999999994446899999


Q ss_pred             CCCcEEEEeCCCCCCCC--------CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          260 ADNSIHMFDRRKLTSDG--------VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       260 ~dg~i~vwd~~~~~~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      .||.|++||++......        ..+.+..+.+|...|++++|+|++++++++++.||.|++|++...
T Consensus       342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99999999998733110        025677888899999999999999977889999999999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.6e-29  Score=234.09  Aligned_cols=237  Identities=14%  Similarity=0.118  Sum_probs=167.0

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC-------CCCeEEEEeeCCCcEEEEeCcCCCCc
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP-------QNSKIVATHTDSPDVLIWDVEAQPNR  119 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------~~~~~l~tg~~dg~i~vwd~~~~~~~  119 (407)
                      .+++++.|+++|||...   ............+.+|.+.|++|+|+|       .++++||||+.|++|+|||+.+..  
T Consensus       103 ~las~~~d~~v~lw~~~---~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~--  177 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITK---NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG--  177 (393)
T ss_dssp             EEEEEETTSCEEEEEEE---TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--
T ss_pred             EEEEEeCCCcEEEEECC---CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--
Confidence            48899999999999322   111000011112347999999999987       368899999999999999987542  


Q ss_pred             ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEE
Q 046899          120 HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED  199 (407)
Q Consensus       120 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~  199 (407)
                                                                                        ++..+.+|...|.+
T Consensus       178 ------------------------------------------------------------------~~~~~~~~~~~v~~  191 (393)
T 4gq1_A          178 ------------------------------------------------------------------PILAGYPLSSPGIS  191 (393)
T ss_dssp             ------------------------------------------------------------------EEEEEEECSSCEEE
T ss_pred             ------------------------------------------------------------------eeeeecCCCCCcEE
Confidence                                                                              23345578889999


Q ss_pred             EEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce-----------------------eeecccCcceEEEEecCCCCCEEE
Q 046899          200 VQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV-----------------------KVEKAHNADIHCVDWNPHDVNLIL  256 (407)
Q Consensus       200 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------~~~~~~~~~v~~l~~~~~~~~~l~  256 (407)
                      ++|+|++.++|++|+.|++|++||+++++....                       ....+|...+.++.|.+.++..++
T Consensus       192 v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~  271 (393)
T 4gq1_A          192 VQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGIL  271 (393)
T ss_dssp             EEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEE
T ss_pred             EEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEE
Confidence            999999867899999999999999988752110                       112357778899999744999999


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc------------------C-CCCCEEEEeeCCCeEEEEe
Q 046899          257 TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS------------------P-DKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       257 tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~------------------~-~~~~ll~s~~~d~~i~vwd  317 (407)
                      +++.|+.+++||++.      .+....+..|...+..+.+.                  | .+..++++|+.||+|++||
T Consensus       272 s~s~d~~i~vwd~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd  345 (393)
T 4gq1_A          272 AMCKSGAWLRWNLFA------NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLIN  345 (393)
T ss_dssp             EECTTSEEEEEEC-------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCEEEEECcc------CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence            999999999999987      55555555554444443333                  2 3444567888999999999


Q ss_pred             CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +.+++.......+..+|++++||||                  +..|++++.+| +.+|++.
T Consensus       346 ~~~~~~~~~~~~~~~~V~svafspd------------------G~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          346 TYEKDSNSIPIQLGMPIVDFCWHQD------------------GSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             TTCTTCCEEEEECSSCEEEEEECTT------------------SSEEEEEESSE-EEEEEEG
T ss_pred             CCCCcEEEEecCCCCcEEEEEEcCC------------------CCEEEEEeCCC-eEEEEEe
Confidence            9999888888889999999999999                  88999988765 5566653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.2e-28  Score=222.86  Aligned_cols=253  Identities=16%  Similarity=0.169  Sum_probs=187.9

Q ss_pred             cCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEEE
Q 046899           35 LVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVLI  110 (407)
Q Consensus        35 ~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~v  110 (407)
                      +.-+..++.|.|   .+++++.|+.+++|...      ...........+|.+.|++++|+++ ++++|++|+.||.|++
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A           10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVE------GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             CCCCEEEEEECSSSSEEEEEETTSCEEEEEEE------TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             CcccEEEEEEcCCCCEEEEEECCCcEEEEecC------CCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            445677788877   48889999999999221      1112223345579999999999873 2889999999999999


Q ss_pred             EeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC--CCccccccCCCCCCCCCCCCcC-
Q 046899          111 WDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA--NSKNASKSGGNGDKPLESPSIG-  185 (407)
Q Consensus       111 wd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~-  185 (407)
                      ||+.++.  ....+..|...                          +..+.....  ...+++++.++.+++||+.... 
T Consensus        84 wd~~~~~~~~~~~~~~~~~~--------------------------v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  137 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSAS--------------------------VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  137 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSC--------------------------EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred             EEcCCCceeEeeeecCCCcc--------------------------eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence            9998764  33333333221                          111111111  2457888999999999998774 


Q ss_pred             -ceeeEeecccCEEEEEECC-------------CCCcEEEEEeCCCcEEEEEcCCCCCC--ceeeecccCcceEEEEecC
Q 046899          186 -ARGKYLGHEDTVEDVQFCP-------------SSAQEFCSVGDDSCLILWDARSGSTP--AVKVEKAHNADIHCVDWNP  249 (407)
Q Consensus       186 -~~~~~~~~~~~v~~l~~~~-------------~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~~~  249 (407)
                       ....+..|...|.+++|+|             ++ .+|++++.||.|++||++++...  ....+..|...|.+++|+|
T Consensus       138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp  216 (379)
T 3jrp_A          138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP  216 (379)
T ss_dssp             CCEEEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred             eeeEEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC
Confidence             3445678999999999999             46 89999999999999999877632  3456678999999999999


Q ss_pred             CC---CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          250 HD---VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       250 ~~---~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                       +   +++|++++.||.|++||++...... ...+.....|...|++++|+|++.+| ++++.||.|++||+.....
T Consensus       217 -~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          217 -TVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLWKENLEGK  290 (379)
T ss_dssp             -CCSSSEEEEEEETTSCEEEEEESSTTSCC-EEEESSSSCCSSCEEEEEECSSSCCE-EEEESSSSEEEEEEEETTE
T ss_pred             -CCCCCCeEEEEeCCCEEEEEeCCCCCccc-eeeeeccccCCCcEEEEEEcCCCCEE-EEecCCCcEEEEeCCCCCc
Confidence             7   8999999999999999998732000 01122223488899999999999976 6899999999999986443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=7.3e-29  Score=230.51  Aligned_cols=227  Identities=18%  Similarity=0.301  Sum_probs=182.7

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      .....++++|....++++|+.||.|+||++......                                            
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------------------------------------------   70 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV--------------------------------------------   70 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC--------------------------------------------
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC--------------------------------------------
Confidence            445568888855556667899999999998643111                                            


Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCC-----Cceeeecc
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGST-----PAVKVEKA  237 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~  237 (407)
                                          ...+..+.+|...|++++|+| ++ .+|++|+.||.|++||+.++..     .....+.+
T Consensus        71 --------------------~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~  129 (402)
T 2aq5_A           71 --------------------DKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG  129 (402)
T ss_dssp             --------------------CTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred             --------------------CCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence                                012334567999999999999 66 8999999999999999998742     24667789


Q ss_pred             cCcceEEEEecCCCC-CEEEEEeCCCcEEEEeCCCCCCCCCCCceeee--cCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          238 HNADIHCVDWNPHDV-NLILTGSADNSIHMFDRRKLTSDGVGSPIHKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      |...|.+++|+| ++ ++|++|+.||.|++||+++      ++.+..+  ..|...|.+++|+|++.+| ++++.|+.|+
T Consensus       130 h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~  201 (402)
T 2aq5_A          130 HTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGT------GAAVLTLGPDVHPDTIYSVDWSRDGALI-CTSCRDKRVR  201 (402)
T ss_dssp             CSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTT------TEEEEEECTTTCCSCEEEEEECTTSSCE-EEEETTSEEE
T ss_pred             CCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCC------CCccEEEecCCCCCceEEEEECCCCCEE-EEEecCCcEE
Confidence            999999999999 65 7999999999999999998      8889899  7899999999999999966 6999999999


Q ss_pred             EEeCCCCCccccc-ccCCCc-ccCCCCcCcchhccccceeeeeEeeCccceeeeE---EEeeeEEEeeccccccCChHHH
Q 046899          315 IWDHEKIGEKQDY-GELKYP-IIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL---TMVKVLEIWRMIDLIYRPEEEV  389 (407)
Q Consensus       315 vwd~~~~~~~~~~-~~~~~~-v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~---~~d~~i~iwd~~~~~~~~~~~~  389 (407)
                      +||+++++.+..+ ..|... +..+.|+++                  +..+++|   +.|+.|++||+..      ++.
T Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~l~~g~~~~~d~~i~iwd~~~------~~~  257 (402)
T 2aq5_A          202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVSE------------------GKILTTGFSRMSERQVALWDTKH------LEE  257 (402)
T ss_dssp             EEETTTTEEEEEEECSSCSSSCCEEEECST------------------TEEEEEEECTTCCEEEEEEETTB------CSS
T ss_pred             EEeCCCCceeeeeccCCCCCcceEEEEcCC------------------CcEEEEeccCCCCceEEEEcCcc------ccC
Confidence            9999998888877 566655 777888777                  7788888   6899999999973      221


Q ss_pred             -HHHHh-hcccceeEeeccC
Q 046899          390 -LAELD-KFKSHIFGCDKSC  407 (407)
Q Consensus       390 -~~~~~-~h~~~v~~~~~s~  407 (407)
                       +.... .|...|.+++|++
T Consensus       258 ~~~~~~~~~~~~v~~~~~s~  277 (402)
T 2aq5_A          258 PLSLQELDTSSGVLLPFFDP  277 (402)
T ss_dssp             CSEEEECCCCSSCEEEEEET
T ss_pred             CceEEeccCCCceeEEEEcC
Confidence             11222 4677888988875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=1.2e-28  Score=223.50  Aligned_cols=233  Identities=10%  Similarity=0.046  Sum_probs=183.9

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      +|.+.|++++|+| ++++|++|+.||.|++||+.+....                                         
T Consensus         9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~-----------------------------------------   46 (342)
T 1yfq_A            9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN-----------------------------------------   46 (342)
T ss_dssp             CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE-----------------------------------------
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCcc-----------------------------------------
Confidence            6999999999999 8889999999999999998754311                                         


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCc-EEEEEeCCCcEEEEEc-CCCCCCceeeecc-
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQ-EFCSVGDDSCLILWDA-RSGSTPAVKVEKA-  237 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~-  237 (407)
                                              .....+.+|...|.+++|+|++ . +|++|+.||.|++||+ .++.   ...+.. 
T Consensus        47 ------------------------~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~   98 (342)
T 1yfq_A           47 ------------------------VDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPS---FQALTNN   98 (342)
T ss_dssp             ------------------------EEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSSS---EEECBSC
T ss_pred             ------------------------ccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCCc---eEecccc
Confidence                                    0123344788999999999998 8 8999999999999999 7765   466677 


Q ss_pred             -cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCC---CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          238 -HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG---VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       238 -~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~---~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                       |...|.+++|+|  +++|++++.||.|++||++......   ..+++..+. |...|.+++|+|++  + ++++.|+.|
T Consensus        99 ~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l-~~~~~d~~i  172 (342)
T 1yfq_A           99 EANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--L-IVGMNNSQV  172 (342)
T ss_dssp             CCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--E-EEEESTTEE
T ss_pred             CCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--E-EEEeCCCeE
Confidence             999999999999  7899999999999999987510000   013344555 88999999999987  4 699999999


Q ss_pred             EEEeCCC-CCcc--cccccCCCcccCCCCcC-cchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH
Q 046899          314 NIWDHEK-IGEK--QDYGELKYPIIHPAYSS-DMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV  389 (407)
Q Consensus       314 ~vwd~~~-~~~~--~~~~~~~~~v~~~~~s~-d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~  389 (407)
                      ++||+++ ....  .....+..++.+++|+| +                  +..+++++.|+.|+||++.........++
T Consensus       173 ~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------------------~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  234 (342)
T 1yfq_A          173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE------------------QEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             EEEESSCCTTCCCEEEECSCSSCEEEEEECSGG------------------GCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             EEEECCccccccceeeecCCCCceeEEEECCCC------------------CCEEEEEecCCcEEEEEEcCCCccccccc
Confidence            9999998 5432  23445677888888888 7                  78999999999999999973100000266


Q ss_pred             HHHHhhccc---------ceeEeeccC
Q 046899          390 LAELDKFKS---------HIFGCDKSC  407 (407)
Q Consensus       390 ~~~~~~h~~---------~v~~~~~s~  407 (407)
                      +..+.+|..         .|.+++|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~  261 (342)
T 1yfq_A          235 RFAFRCHRLNLKDTNLAYPVNSIEFSP  261 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred             ceeeecccccccccccceeEEEEEEcC
Confidence            667777765         999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-27  Score=225.29  Aligned_cols=224  Identities=15%  Similarity=0.109  Sum_probs=173.0

Q ss_pred             eCCCceEEEEEeCCCCeEE-EEeeCCCcEEEEeCc--CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           81 IHPGEVNRIRELPQNSKIV-ATHTDSPDVLIWDVE--AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      +|.+.|++++|+| ++++| ++|+.||.|++||+.  ++.....+..+...              .          .+..
T Consensus       100 ~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------------~----------~v~~  154 (450)
T 2vdu_B          100 PIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS--------------K----------RPNA  154 (450)
T ss_dssp             CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS--------------S----------CEEE
T ss_pred             ccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC--------------C----------CceE
Confidence            5677899999999 67764 999999999999998  66555444321110              0          1111


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCcee----eEeecccCEEEEEECCC---CCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGARG----KYLGHEDTVEDVQFCPS---SAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~v~~l~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      +........+++++.++.+.+|++..++...    .+.+|...|.+++|+|+   + .+|++|+.|+.|++||++++.  
T Consensus       155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~--  231 (450)
T 2vdu_B          155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCF--  231 (450)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTT--
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCc--
Confidence            1112223457778888999999887776554    77889999999999999   7 899999999999999999887  


Q ss_pred             ceee-ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-----------------------
Q 046899          231 AVKV-EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-----------------------  286 (407)
Q Consensus       231 ~~~~-~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------------  286 (407)
                      .... ..+|...|.+++|+  ++++|++|+.|+.|++||+++      ++++..+..                       
T Consensus       232 ~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (450)
T 2vdu_B          232 IVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKT------GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN  303 (450)
T ss_dssp             CEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTT------CCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred             eeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCC------CcEeeeecchhhhhhhhhhccccccccccccc
Confidence            4544 56899999999999  789999999999999999998      777777753                       


Q ss_pred             --CCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeC--CCC---CcccccccCCCcccCCCCcCc
Q 046899          287 --HSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDH--EKI---GEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       287 --h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~--~~~---~~~~~~~~~~~~v~~~~~s~d  342 (407)
                        ....|.+++|+|++++++ +++ .|+.|++||+  ...   +.+..+..+ .++.+++|+|+
T Consensus       304 ~~~~~~v~~i~~~~~~~~l~-~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          304 DIIEFAVSKIIKSKNLPFVA-FFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             -CBCCCEEEEEECSSSSEEE-EEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred             ccceEEEEEEEEeCCCCEEE-EEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence              245799999999999775 555 8999999999  444   445556555 67777777665

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=5.8e-27  Score=213.91  Aligned_cols=264  Identities=13%  Similarity=0.145  Sum_probs=185.0

Q ss_pred             cCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEE
Q 046899           35 LVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIW  111 (407)
Q Consensus        35 ~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  111 (407)
                      ..-+..++.|.|+   +++++.++ +++|...         ........ +...+..+++.+....++++|+.|++|++|
T Consensus        18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVH---------PVAHIMSQ-EMRHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             -CCCCCEEEECTTSSEEEEECSSE-EEEEEET---------TEEEEEEE-ECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCE-EEEEecC---------Ccceeeee-ecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            3456778889884   66666665 7899211         12222222 333588888888444455778889999999


Q ss_pred             eCcCCCCcccccCcCCCCCC-----------CCCcEEEEecccc-ccccccC-CCCCcccccCCCCCcccc--ccCCCCC
Q 046899          112 DVEAQPNRHAVLGAADSHPD-----------LDQSVVLWSIQDH-VSALAAE-PGSAKSTASGGANSKNAS--KSGGNGD  176 (407)
Q Consensus       112 d~~~~~~~~~~~~~~~~~~~-----------~d~~i~~w~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~i  176 (407)
                      |..+++....+..+. .+..           .++.+++||+.+. ....... +........    ..++.  ++.+|.+
T Consensus        87 d~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~----~~la~~sg~~~g~v  161 (355)
T 3vu4_A           87 DDVKKQDVSRIKVDA-PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN----GLLVYSNEFNLGQI  161 (355)
T ss_dssp             ETTTTEEEEEEECSS-CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET----TEEEEEESSCTTCE
T ss_pred             ECCCCcEEEEEECCC-ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc----cEEEEeCCCcCcEE
Confidence            999887665543221 1111           1889999999876 2211111 111111111    23333  6899999


Q ss_pred             CCCCCCCcC----------------ceeeEeecccCEEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCCCceeeec-c-
Q 046899          177 KPLESPSIG----------------ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSC-LILWDARSGSTPAVKVEK-A-  237 (407)
Q Consensus       177 ~i~d~~~~~----------------~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~-~-  237 (407)
                      ++||+.+++                .+..+.+|...|++++|+|++ .+|++|+.|++ |++||+++++  ....+. + 
T Consensus       162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~  238 (355)
T 3vu4_A          162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGV--LVREFRRGL  238 (355)
T ss_dssp             EEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCC--EEEEEECTT
T ss_pred             EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCc--EEEEEEcCC
Confidence            999998765                267888999999999999999 89999999998 9999999988  666766 4 


Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec---------------------CCCCCEEEEEE
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE---------------------GHSAAVLCVQW  296 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~---------------------~h~~~v~~v~~  296 (407)
                      |...|++++|+| ++++|++|+.|+.|++||++....    .....+.                     .+......++|
T Consensus       239 h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (355)
T 3vu4_A          239 DRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQD----NKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW  313 (355)
T ss_dssp             CCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSC----CCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCC----cccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence            999999999999 999999999999999999986431    1111111                     11223467999


Q ss_pred             cCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          297 SPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       297 ~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      ++++.+| ++++.||.+++|++...+.
T Consensus       314 ~~d~~~l-~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          314 ISESSLV-VVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             SSSSEEE-EEETTTTEEEEEEEEEETT
T ss_pred             eCCCCEE-EEEeCCCeEEEEEEEcCCC
Confidence            9999966 6889999999999876543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.3e-27  Score=235.44  Aligned_cols=255  Identities=16%  Similarity=0.161  Sum_probs=190.8

Q ss_pred             ccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCC-CCeEEEEeeCCCcEE
Q 046899           34 NLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQ-NSKIVATHTDSPDVL  109 (407)
Q Consensus        34 ~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~tg~~dg~i~  109 (407)
                      .+.-+..++.|.|   .+++++.|+.+++|...      ...........+|.+.|++++|+|+ ++++|++|+.||.|+
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~------~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE------GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEE------TTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecC------CCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            3445677778876   48899999999999221      1112233445579999999999883 289999999999999


Q ss_pred             EEeCcCCC--CcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC--CCccccccCCCCCCCCCCCCcC
Q 046899          110 IWDVEAQP--NRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA--NSKNASKSGGNGDKPLESPSIG  185 (407)
Q Consensus       110 vwd~~~~~--~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~i~d~~~~~  185 (407)
                      +||+.++.  ....+.+|...                          +..+.....  ...+++++.++.+++||+....
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~--------------------------V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSAS--------------------------VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSC--------------------------EEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             EEECCCCcccccccccCCCCC--------------------------eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            99998764  23333333221                          111111111  3457888999999999998763


Q ss_pred             --ceeeEeecccCEEEEEECCC-------------CCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEec
Q 046899          186 --ARGKYLGHEDTVEDVQFCPS-------------SAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWN  248 (407)
Q Consensus       186 --~~~~~~~~~~~v~~l~~~~~-------------~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~  248 (407)
                        ....+.+|...|.+++|+|.             + .+|++|+.||.|++||++++..  .....+.+|...|++++|+
T Consensus       135 ~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s  213 (753)
T 3jro_A          135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS  213 (753)
T ss_dssp             CCCCEEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred             CcceeEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence              44556789999999999994             5 7899999999999999998753  2345677899999999999


Q ss_pred             CCC---CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          249 PHD---VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       249 ~~~---~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                      | +   +.+|++|+.||.|++||++...... ...+.....|...|++++|+|++.++ ++|+.||.|++||+......
T Consensus       214 p-~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l-~s~s~Dg~I~vwd~~~~~~~  289 (753)
T 3jro_A          214 P-TVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLWKENLEGKW  289 (753)
T ss_dssp             C-CCSSSEEEEEEESSSCEEEEEESSSSSCC-BCCBSSSSCCSSCCCCEEECTTTCCE-EEECSSSCEECCBCCSSSCC
T ss_pred             c-CCCCCCEEEEEecCCEEEEecCCCCCCcc-eeEEeccCCCCCceEEEEEcCCCCEE-EEEcCCCEEEEEecCCCCCc
Confidence            9 6   8999999999999999998732100 01334445688999999999999976 69999999999999965443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=3.8e-26  Score=211.21  Aligned_cols=265  Identities=12%  Similarity=0.074  Sum_probs=196.5

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      +++++.++.+++|-         ....+....+.+...+.+++|+| +++ ++++++.|++|++||+.+++....+..+.
T Consensus         5 ~vs~~~d~~v~v~d---------~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            5 YIANSESDNISVID---------VTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEETTTTEEEEEE---------TTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEcCCCCEEEEEE---------CCCCeEEEEeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence            46778889999992         11223444455566799999999 665 45788899999999998887655544322


Q ss_pred             C-----CCCCC---------CCcEEEEecccccccccc-CCCCCcccccCCCCCcc-ccccCCCCCCCCCCCCcCceeeE
Q 046899          127 D-----SHPDL---------DQSVVLWSIQDHVSALAA-EPGSAKSTASGGANSKN-ASKSGGNGDKPLESPSIGARGKY  190 (407)
Q Consensus       127 ~-----~~~~~---------d~~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~d~~~~~~~~~~  190 (407)
                      .     ..++.         ++.|.+||+.++...... .......+........+ ++++.++.+.+||..+++.+..+
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            1     11111         689999999876432221 11222222333333334 67788999999999999888887


Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe---CCCcEEEE
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS---ADNSIHMF  267 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~---~dg~i~vw  267 (407)
                      ..+ ..+.+++|+|++..++++++.++.|++||+++++  ....+ .+...+.+++|+| +++++++++   .++.|++|
T Consensus       155 ~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~-~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--VIDTV-KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE-ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEE
T ss_pred             ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe--EEEEE-ecCCCccceEECC-CCCEEEEEecCcCCCcEEEE
Confidence            655 4579999999995455788889999999999876  44443 4567889999999 888888887   68999999


Q ss_pred             eCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcc
Q 046899          268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPI  334 (407)
Q Consensus       268 d~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  334 (407)
                      |+++      ++++..+..|. .+.+++|+|++++++++++.|+.|++||+.+++....+..+..+.
T Consensus       230 d~~~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~  289 (391)
T 1l0q_A          230 DTGT------NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPY  289 (391)
T ss_dssp             ETTT------TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             ECCC------CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCC
Confidence            9998      78888888765 579999999999887888999999999999988887777665553

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=3.1e-27  Score=221.56  Aligned_cols=279  Identities=9%  Similarity=0.007  Sum_probs=203.6

Q ss_pred             eeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccccc-----CcCCCCCCCCCcEEEEeccccccccc
Q 046899           75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL-----GAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      .....+.+...+.+++|+| ++.++++++.|+.|++||+.+++......     +|..       .  ++.         
T Consensus       114 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~-------~--v~~---------  174 (433)
T 3bws_A          114 RFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG-------F--VET---------  174 (433)
T ss_dssp             EEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC-------E--EEE---------
T ss_pred             eEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC-------c--eeE---------
Confidence            4445555666788999999 99999999999999999999876554221     1111       1  111         


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST  229 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  229 (407)
                              +........+++++.++.+++||..+++.+..+..|...+.+++|+|++..++++++.|+.|++||+++++ 
T Consensus       175 --------~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-  245 (433)
T 3bws_A          175 --------ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-  245 (433)
T ss_dssp             --------EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-
T ss_pred             --------EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-
Confidence                    11111123467778889999999999999999988999999999999995455677689999999999876 


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEe--------CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGS--------ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  301 (407)
                       ....+.. ...+.+++|+| +++++++++        .||.|++||+++      ++.+..+ .|...+.+++|+|+++
T Consensus       246 -~~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~~~~~~-~~~~~~~~~~~~~~g~  315 (433)
T 3bws_A          246 -EIRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDK------EKLIDTI-GPPGNKRHIVSGNTEN  315 (433)
T ss_dssp             -EEEECCC-CSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTT------TEEEEEE-EEEECEEEEEECSSTT
T ss_pred             -EEEEecC-CCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCC------CcEEeec-cCCCCcceEEECCCCC
Confidence             4555443 45689999999 888888887        588999999998      6666655 3566899999999998


Q ss_pred             CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCc-----cceeeeEEEeeeEEEe
Q 046899          302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIH-----GRLLVCLTMVKVLEIW  376 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~-----~~~i~~~~~d~~i~iw  376 (407)
                      +++++++.|+.|++||+.+++....+. +...+.+++|+|+.      .  .+++....     ...+++|+.||.|++|
T Consensus       316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg------~--~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          316 KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG------K--YLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS------S--EEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC------C--EEEEEecCCCccccccccccccceEEEEE
Confidence            888888999999999999877666654 55667788888871      0  00111100     1123344447899999


Q ss_pred             eccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          377 RMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       377 d~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      |+.      +++.+..+.++ ..+.+++|++
T Consensus       387 d~~------~~~~~~~~~~~-~~~~~~~~s~  410 (433)
T 3bws_A          387 DTT------TDTVKEFWEAG-NQPTGLDVSP  410 (433)
T ss_dssp             ETT------TTEEEEEEECS-SSEEEEEECT
T ss_pred             ECC------CCcEEEEecCC-CCCceEEEcC
Confidence            998      56655555553 4678888875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=8.8e-26  Score=211.63  Aligned_cols=277  Identities=11%  Similarity=0.053  Sum_probs=200.1

Q ss_pred             eEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC
Q 046899           40 LSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ  116 (407)
Q Consensus        40 ~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~  116 (407)
                      ..+.|.|   .++++..++.+++|-   ................+|.+.|++++|+| +++++++++.|+.|++||+.++
T Consensus       126 ~~~~~s~~~~~~~~~~~~~~i~~~d---~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          126 KSVRFIDNTRLAIPLLEDEGMDVLD---INSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             CCCEESSSSEEEEEBTTSSSEEEEE---TTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTC
T ss_pred             eEEEEeCCCeEEEEeCCCCeEEEEE---CCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCc
Confidence            3566665   255677777899992   11111000000001236889999999987 8999999999999999999887


Q ss_pred             CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcc-ccccCCCCCCCCCCCCcCceeeEeeccc
Q 046899          117 PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKN-ASKSGGNGDKPLESPSIGARGKYLGHED  195 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~d~~~~~~~~~~~~~~~  195 (407)
                      +....+..+...+     .-..|+                  +.+   ..+ +++..++.+++||..+++.+..+..+ .
T Consensus       202 ~~~~~~~~~~~~~-----~~~~~~------------------~~~---~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~  254 (433)
T 3bws_A          202 AYKATVDLTGKWS-----KILLYD------------------PIR---DLVYCSNWISEDISVIDRKTKLEIRKTDKI-G  254 (433)
T ss_dssp             CEEEEEECSSSSE-----EEEEEE------------------TTT---TEEEEEETTTTEEEEEETTTTEEEEECCCC-S
T ss_pred             eEEEEEcCCCCCe-----eEEEEc------------------CCC---CEEEEEecCCCcEEEEECCCCcEEEEecCC-C
Confidence            6655544332210     001111                  111   123 44557889999999988887777654 4


Q ss_pred             CEEEEEECCCCCcEEEEEe--------CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCC-EEEEEeCCCcEEE
Q 046899          196 TVEDVQFCPSSAQEFCSVG--------DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVN-LILTGSADNSIHM  266 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~tg~~dg~i~v  266 (407)
                      .+.+++|+|++ ..+++++        .|+.|++||+++++  .... ..|...+.+++|+| +++ ++++++.|+.|++
T Consensus       255 ~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~-~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          255 LPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEK--LIDT-IGPPGNKRHIVSGN-TENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             EEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEE-EEEEECEEEEEECS-STTEEEEEETTTTEEEE
T ss_pred             CceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCc--EEee-ccCCCCcceEEECC-CCCEEEEEecCCCEEEE
Confidence            59999999999 6777776        58999999999876  3333 35667889999999 665 5677789999999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC---------------CCeEEEEeCCCCCcccccccCC
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE---------------DGILNIWDHEKIGEKQDYGELK  331 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~---------------d~~i~vwd~~~~~~~~~~~~~~  331 (407)
                      ||+++      ++.+..+. +...+.+++|+|++++++ +++.               ||.|++||+.+++.+..+.. .
T Consensus       330 ~d~~~------~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~  400 (433)
T 3bws_A          330 YDLKE------KKVQKSIP-VFDKPNTIALSPDGKYLY-VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-G  400 (433)
T ss_dssp             EETTT------TEEEEEEE-CSSSEEEEEECTTSSEEE-EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-S
T ss_pred             EECCC------CcEEEEec-CCCCCCeEEEcCCCCEEE-EEecCCCccccccccccccceEEEEEECCCCcEEEEecC-C
Confidence            99998      77777776 677899999999999775 4444               57999999999887777665 4


Q ss_pred             CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEE-eeeEEEeecc
Q 046899          332 YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMI  379 (407)
Q Consensus       332 ~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~  379 (407)
                      ..+.+++|+||                  +..|++++. |++|++|++.
T Consensus       401 ~~~~~~~~s~d------------------g~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          401 NQPTGLDVSPD------------------NRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             SSEEEEEECTT------------------SCEEEEEETTTTEEEEEEET
T ss_pred             CCCceEEEcCC------------------CCEEEEEECCCCeEEEEEec
Confidence            45678888887                  778877764 9999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2e-25  Score=208.60  Aligned_cols=190  Identities=11%  Similarity=0.095  Sum_probs=145.7

Q ss_pred             CCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc-----ceEEEEec
Q 046899          175 GDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA-----DIHCVDWN  248 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~l~~~  248 (407)
                      .++.|+...++....+. .|...|.+++|+|+| .+||+++.||.|++||...    +...+. |..     .+.+++|+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafS  138 (588)
T 2j04_A           65 FENKLDFELAQQNGLLNSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWN  138 (588)
T ss_dssp             CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEEC
T ss_pred             CcceEEEEeCCCceEeecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEc
Confidence            44555554444333332 468899999999999 8999999999999999543    344555 554     59999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC-------ceeee----cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          249 PHDVNLILTGSADNSIHMFDRRKLTSDGVGS-------PIHKF----EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       249 ~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~-------~~~~~----~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      | ++++||+|+.||.|++||++.      +.       .+.++    .+|...|.+++|+|+|  + ++++.|++|++||
T Consensus       139 P-DG~~LAsgs~DGtVkIWd~~~------~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd  208 (588)
T 2j04_A          139 P-IESSIVVGNEDGELQFFSIRK------NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMT  208 (588)
T ss_dssp             S-SSSCEEEEETTSEEEEEECCC------CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEEC
T ss_pred             C-CCCEEEEEcCCCEEEEEECCC------CccccccceeeeeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEE
Confidence            9 999999999999999999987      43       25776    6688899999999999  5 5888899999999


Q ss_pred             CCCCCcc---ccc-ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899          318 HEKIGEK---QDY-GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL  393 (407)
Q Consensus       318 ~~~~~~~---~~~-~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  393 (407)
                      +...+..   +++ .+|...|.+++|+                    +..|++++ +++|++||+.      .++.....
T Consensus       209 ~~~~~~~~~~~tL~~~h~~~V~svaFs--------------------g~~LASa~-~~tIkLWd~~------~~~~~~~~  261 (588)
T 2j04_A          209 VSASSHQPVSRMIQNASRRKITDLKIV--------------------DYKVVLTC-PGYVHKIDLK------NYSISSLK  261 (588)
T ss_dssp             CCSSSSCCCEEEEECCCSSCCCCEEEE--------------------TTEEEEEC-SSEEEEEETT------TTEEEEEE
T ss_pred             CCCCccccceeeecccccCcEEEEEEE--------------------CCEEEEEe-CCeEEEEECC------CCeEEEEE
Confidence            9886632   345 3677778777773                    35677776 7999999997      44442222


Q ss_pred             hhcccceeEeec--cC
Q 046899          394 DKFKSHIFGCDK--SC  407 (407)
Q Consensus       394 ~~h~~~v~~~~~--s~  407 (407)
                      .||.+.|.+++|  |+
T Consensus       262 ~gh~~~V~~va~~~s~  277 (588)
T 2j04_A          262 TGSLENFHIIPLNHEK  277 (588)
T ss_dssp             CSCCSCCCEEEETTCS
T ss_pred             cCCCceEEEEEeeeCC
Confidence            289999999999  64

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=1.7e-25  Score=206.75  Aligned_cols=248  Identities=10%  Similarity=0.098  Sum_probs=187.2

Q ss_pred             CeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCC
Q 046899           96 SKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNG  175 (407)
Q Consensus        96 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (407)
                      +.++++++.|+.|++||+.+++....+..+..                 ...+...       +.+.  ..+++++.++.
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-----------------~~~~~~s-------~dg~--~l~~~~~~d~~   55 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-----------------PMGAVIS-------PDGT--KVYVANAHSND   55 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-----------------EEEEEEC-------TTSS--EEEEEEGGGTE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-----------------cceEEEC-------CCCC--EEEEECCCCCe
Confidence            45789999999999999988765554433211                 1111111       1221  11355668899


Q ss_pred             CCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE
Q 046899          176 DKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI  255 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  255 (407)
                      +++||..+++.+..+..+. .+.+++|+|++..++++++.++.|++||+.+++  ....+. +...+.+++|+| +++.+
T Consensus        56 i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l  130 (391)
T 1l0q_A           56 VSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTVK-TGKSPLGLALSP-DGKKL  130 (391)
T ss_dssp             EEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE-CSSSEEEEEECT-TSSEE
T ss_pred             EEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe--EEEEEe-CCCCcceEEECC-CCCEE
Confidence            9999999998888887555 899999999994455666678999999999887  444443 455789999999 77766


Q ss_pred             -EEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcc
Q 046899          256 -LTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPI  334 (407)
Q Consensus       256 -~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  334 (407)
                       ++++.++.|++||+++      ++.+..+..+ ..+.+++|+|++++++++++.|+.|++||+++++....+.. ...+
T Consensus       131 ~~~~~~~~~v~~~d~~~------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~  202 (391)
T 1l0q_A          131 YVTNNGDKTVSVINTVT------KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAP  202 (391)
T ss_dssp             EEEETTTTEEEEEETTT------TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEE
T ss_pred             EEEeCCCCEEEEEECCC------CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCc
Confidence             7888899999999998      7888888765 45799999999998877888999999999998776655543 4456


Q ss_pred             cCCCCcCcchhccccceeeeeEeeCccceeeeEE---EeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          335 IHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT---MVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       335 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .+++|+|+                  +..+++++   .++.|++||+.      +++++..+..|. .+.+++|++
T Consensus       203 ~~~~~~~~------------------g~~l~~~~~~~~~~~v~~~d~~------~~~~~~~~~~~~-~~~~~~~s~  253 (391)
T 1l0q_A          203 SGIAVNPE------------------GTKAYVTNVDKYFNTVSMIDTG------TNKITARIPVGP-DPAGIAVTP  253 (391)
T ss_dssp             EEEEECTT------------------SSEEEEEEECSSCCEEEEEETT------TTEEEEEEECCS-SEEEEEECT
T ss_pred             cceEECCC------------------CCEEEEEecCcCCCcEEEEECC------CCeEEEEEecCC-CccEEEEcc
Confidence            67777777                  77788777   58899999998      566666666665 467888874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.1e-23  Score=196.07  Aligned_cols=223  Identities=13%  Similarity=0.092  Sum_probs=173.4

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCC---cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSP---DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP  152 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~  152 (407)
                      ...+.+|.+.|.+++|+| +++.|++++.++   .|++||+.+++.                                  
T Consensus       171 ~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~----------------------------------  215 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV----------------------------------  215 (415)
T ss_dssp             CEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE----------------------------------
T ss_pred             CEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcE----------------------------------
Confidence            345557999999999999 888999998875   888888875431                                  


Q ss_pred             CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEE-EEeCCCc--EEEEEcCCCCC
Q 046899          153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFC-SVGDDSC--LILWDARSGST  229 (407)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~  229 (407)
                                                         ..+..|...+.+++|+|+| +.|+ +++.++.  |.+||+++++ 
T Consensus       216 -----------------------------------~~l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~-  258 (415)
T 2hqs_A          216 -----------------------------------RQVASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQ-  258 (415)
T ss_dssp             -----------------------------------EEEECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC-
T ss_pred             -----------------------------------EEeecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCC-
Confidence                                               1233466789999999999 5555 7776665  9999998876 


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEeC-CC--cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                        ...+..|...+.+++|+| +++.|++++. ++  .|.+||+..      ++ ...+..|...+.+++|+|+|++|+.+
T Consensus       259 --~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~------~~-~~~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          259 --IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNING------GA-PQRITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             --EEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTS------SC-CEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             --EEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCC------CC-EEEEecCCCcccCeEECCCCCEEEEE
Confidence              356677888999999999 8898888776 45  677778876      44 44566677889999999999977544


Q ss_pred             eeC--CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecccc
Q 046899          307 SAE--DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMIDL  381 (407)
Q Consensus       307 ~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~~~  381 (407)
                      +..  +..|.+||+.+++. ..+..+. .+..++|+||                  +..|+.++.++   .|++||+.  
T Consensus       329 ~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spd------------------g~~l~~~s~~~~~~~l~~~d~~--  386 (415)
T 2hqs_A          329 SSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPN------------------GTMVIYSSSQGMGSVLNLVSTD--  386 (415)
T ss_dssp             EECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTT------------------SSEEEEEEEETTEEEEEEEETT--
T ss_pred             ECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCC------------------CCEEEEEEcCCCccEEEEEECC--
Confidence            433  35899999998665 3444443 7778889888                  88888888887   89999985  


Q ss_pred             ccCChHHHHHHHhhcccceeEeeccC
Q 046899          382 IYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       382 ~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                           +..+..+.+|.+.|.+++|||
T Consensus       387 -----g~~~~~l~~~~~~v~~~~~~~  407 (415)
T 2hqs_A          387 -----GRFKARLPATDGQVKFPAWSP  407 (415)
T ss_dssp             -----SCCEEECCCSSSEEEEEEECC
T ss_pred             -----CCcEEEeeCCCCCCcCCcccc
Confidence                 555677899999999999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.4e-24  Score=190.80  Aligned_cols=262  Identities=12%  Similarity=0.069  Sum_probs=170.9

Q ss_pred             hhhhhhhhccCceEEEeeeecc-cCCCeeEEEEeecc------cccCccc-eEEEEeecccCcccCCcceeeEEEeeCCC
Q 046899           13 DDRYTQWKSLVPVLYDWLANHN-LVWPSLSCRWGPQL------EQATYKN-RQRLYLSEQFNEEARSPFVKKFKTIIHPG   84 (407)
Q Consensus        13 ~~~~~~w~~~~~~~y~~l~~~~-~~~p~~s~~~~~~~------~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~h~~   84 (407)
                      +.-+.+|++....-...++.-. .+-|.+.+.+.|+.      +-|.-.. .++.+.   +. .++.........-+|..
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla---~s-pd~~~~~~~l~s~g~~~  137 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF---CS-SDDESEKQVLLKSGNIK  137 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC---C-------CCEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE---EC-CCccccccEEEeCCCeE
Confidence            5667889988874333333333 34477888777731      1111110 122221   11 11111233333346776


Q ss_pred             ceEEEEEeCCCCeEEEEee--CCCcEEEEeCcC-CCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           85 EVNRIRELPQNSKIVATHT--DSPDVLIWDVEA-QPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~--~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      .|..+   + +++++.+++  .|+.|++|++.. ++.+..+..|...     .++..                  +.+..
T Consensus       138 ~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~-----v~~l~------------------fs~~~  190 (356)
T 2w18_A          138 AVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE-----ETILT------------------FAEVQ  190 (356)
T ss_dssp             EEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS-----SCEEE------------------EEEEE
T ss_pred             EEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc-----eeeEE------------------eeccC
Confidence            67665   4 788888854  699999999954 5444444443332     11111                  11111


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecc---cCEEEEEECCCCCcEE------------EEEeCCCcEEEEEcCC
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHE---DTVEDVQFCPSSAQEF------------CSVGDDSCLILWDARS  226 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~v~~l~~~~~~~~~l------------~s~~~dg~i~iwd~~~  226 (407)
                      .....+++++.|++|++||+.+++.+.++.+|.   ..+.+++|+|++ .++            ++|+.|++|++||..+
T Consensus       191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTT
T ss_pred             CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence            223457889999999999999999999998654   467888999998 555            6788999999999998


Q ss_pred             CCCCceeee-----cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE-EEEEcCCC
Q 046899          227 GSTPAVKVE-----KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL-CVQWSPDK  300 (407)
Q Consensus       227 ~~~~~~~~~-----~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~  300 (407)
                      +.  ....+     .+|...+.+.++   ++.++++|+.|++|+|||+++      ++++.++.+|...+. +++|+|+|
T Consensus       270 gk--~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~t------Gk~l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          270 TL--SVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLL------GQCTALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             TE--EEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTT------CSEEEEECCC--CCCCEEEECSSS
T ss_pred             CE--EEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCC------CcEEEEecCCCCCeEEEEEECCCC
Confidence            87  33332     366655544444   467899999999999999999      999999999987655 68999999


Q ss_pred             CCEEEEeeCCCeEEEEeC
Q 046899          301 SSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~  318 (407)
                      ++| ++|+.|++|+|||+
T Consensus       339 ~~L-aSGS~D~TIklWd~  355 (356)
T 2w18_A          339 SHL-LAGQKDGNIFVYHY  355 (356)
T ss_dssp             SEE-EEECTTSCEEEEEE
T ss_pred             CEE-EEEECCCcEEEecC
Confidence            965 79999999999995

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=8.1e-23  Score=196.20  Aligned_cols=300  Identities=10%  Similarity=0.051  Sum_probs=206.8

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeC--cCCCCcccccCc
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDV--EAQPNRHAVLGA  125 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~--~~~~~~~~~~~~  125 (407)
                      ++++..++.+.+|-         ....+....+.....+..++|+| ++++|++++.|++|++||+  .+.+....+...
T Consensus       152 ~vs~~~d~~V~v~D---------~~t~~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g  221 (543)
T 1nir_A          152 SVTLRDAGQIALVD---------GDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  221 (543)
T ss_dssp             EEEEGGGTEEEEEE---------TTTCCEEEEEECSTTEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEcCCCeEEEEE---------CCCceEEEEEecCcccceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence            56677788888881         11222334443222389999999 8999999999999999999  555443333211


Q ss_pred             CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc-CCCCCCCCCCCCcCceeeEeec-----------
Q 046899          126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS-GGNGDKPLESPSIGARGKYLGH-----------  193 (407)
Q Consensus       126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~-----------  193 (407)
                                       .....+.+++.      .+.....+.++. .++.+.+||..+++++..+..+           
T Consensus       222 -----------------~~p~~va~sp~------~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~  278 (543)
T 1nir_A          222 -----------------IEARSVESSKF------KGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP  278 (543)
T ss_dssp             -----------------SEEEEEEECCS------TTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred             -----------------CCcceEEeCCC------cCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccccc
Confidence                             11111112210      000112233333 4788999999999988887642           


Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKL  272 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~  272 (407)
                      ...+..+.++|+++.++++...++.|.+||+.+.+......+ .+...+..+.|+| ++++|+++ ..++.|.+||..+ 
T Consensus       279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~t-  355 (543)
T 1nir_A          279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKD-  355 (543)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTT-
T ss_pred             CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCC-
Confidence            237899999998878888888999999999988763222233 4566788999999 88876654 5689999999998 


Q ss_pred             CCCCCCCceeeecC----CCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCC-------CCcccccccCCCcccCCCCc
Q 046899          273 TSDGVGSPIHKFEG----HSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEK-------IGEKQDYGELKYPIIHPAYS  340 (407)
Q Consensus       273 ~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~s  340 (407)
                           ++++..+..    |.+....+ ++|++..+++|+. .|++|.+||+.+       .+.++++..+...+..+.|+
T Consensus       356 -----g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~  429 (543)
T 1nir_A          356 -----RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH  429 (543)
T ss_dssp             -----TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred             -----CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence                 888888774    55444343 5788555778876 689999999998       78888999888888889999


Q ss_pred             CcchhccccceeeeeEeeCccceeeeEE-------EeeeEEEeeccccccCChHHHHHH---HhhcccceeEeeccC
Q 046899          341 SDMLDIETKLLTSIGMHLIHGRLLVCLT-------MVKVLEIWRMIDLIYRPEEEVLAE---LDKFKSHIFGCDKSC  407 (407)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~---~~~h~~~v~~~~~s~  407 (407)
                      ||                  +..|++.+       .+.+|.|||+.+.....+.-++..   +..|...|..++|++
T Consensus       430 pd------------------g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  488 (543)
T 1nir_A          430 PK------------------SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  488 (543)
T ss_dssp             TT------------------CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred             CC------------------CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence            98                  77777776       367999999984221101111222   245667788888875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=9.2e-23  Score=189.93  Aligned_cols=270  Identities=11%  Similarity=0.016  Sum_probs=187.2

Q ss_pred             CCCceEEEEEeCCCCeEEEEee----CCC----cEEEEeC--cCCCCcc--cccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHT----DSP----DVLIWDV--EAQPNRH--AVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~----~dg----~i~vwd~--~~~~~~~--~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      +...++...|.+.+.+++++|+    .||    +|++||+  .+++.+.  .+.++....                ..+.
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~----------------~~~~  124 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWL----------------RYAG  124 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGH----------------HHHH
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHH----------------HHHH
Confidence            3457888888887778888887    567    8999999  7776442  232222110                0000


Q ss_pred             cCCCCCcc----cccCCCCCccccccCC------CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC--
Q 046899          150 AEPGSAKS----TASGGANSKNASKSGG------NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS--  217 (407)
Q Consensus       150 ~~~~~~~~----~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg--  217 (407)
                      .......+    -..+.+...++.++.+      +.+++||... .....+.+|...+.+++|+|+| +.|++++.++  
T Consensus       125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~  202 (415)
T 2hqs_A          125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGR  202 (415)
T ss_dssp             HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSS
T ss_pred             HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCC
Confidence            00000000    0001112233333332      6889999874 5567788899999999999999 7888888875  


Q ss_pred             -cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE-EEeCCCc--EEEEeCCCCCCCCCCCceeeecCCCCCEEE
Q 046899          218 -CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TGSADNS--IHMFDRRKLTSDGVGSPIHKFEGHSAAVLC  293 (407)
Q Consensus       218 -~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-tg~~dg~--i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~  293 (407)
                       .|++||+++++  . ..+..|...+.+++|+| +++.|+ +++.++.  |++||+++      ++ ...+..|...+.+
T Consensus       203 ~~i~~~d~~tg~--~-~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~------~~-~~~l~~~~~~~~~  271 (415)
T 2hqs_A          203 SALVIQTLANGA--V-RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLAS------GQ-IRQVTDGRSNNTE  271 (415)
T ss_dssp             CEEEEEETTTCC--E-EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTT------CC-EEECCCCSSCEEE
T ss_pred             cEEEEEECCCCc--E-EEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCC------CC-EEeCcCCCCcccc
Confidence             99999999887  3 35567888999999999 888777 6666654  99999987      44 4677788899999


Q ss_pred             EEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe-
Q 046899          294 VQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV-  370 (407)
Q Consensus       294 v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d-  370 (407)
                      ++|+|+|++|++++..++  .|.+||+.+++ ...+..+...+..++||||                  +..|+.++.+ 
T Consensus       272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spd------------------G~~l~~~~~~~  332 (415)
T 2hqs_A          272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSD------------------GKFMVMVSSNG  332 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTT------------------SSEEEEEEECS
T ss_pred             eEECCCCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCC------------------CCEEEEEECcC
Confidence            999999997754443355  68888988765 3444455667778888888                  7888877775 


Q ss_pred             --eeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          371 --KVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       371 --~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                        ..|++||+.      ++++ ..+..|. .+.+++||+
T Consensus       333 g~~~i~~~d~~------~~~~-~~l~~~~-~~~~~~~sp  363 (415)
T 2hqs_A          333 GQQHIAKQDLA------TGGV-QVLSSTF-LDETPSLAP  363 (415)
T ss_dssp             SCEEEEEEETT------TCCE-EECCCSS-SCEEEEECT
T ss_pred             CceEEEEEECC------CCCE-EEecCCC-CcCCeEEcC
Confidence              699999997      4433 2355554 788888885

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.3e-20  Score=166.48  Aligned_cols=246  Identities=11%  Similarity=0.018  Sum_probs=166.4

Q ss_pred             ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC-CCCcccccCcC-C
Q 046899           50 QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA-QPNRHAVLGAA-D  127 (407)
Q Consensus        50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~-~~~~~~~~~~~-~  127 (407)
                      +++.++.+++|-         ...........|.+.|.+++|+| ++++|++++ ++.|.+||+.+ ++.......+. .
T Consensus        17 ~~~~~~~i~~~d---------~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~   85 (297)
T 2ojh_A           17 GGSMRSSIEIFN---------IRTRKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI   85 (297)
T ss_dssp             -CCCCEEEEEEE---------TTTTEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred             CCCcceeEEEEe---------CCCCceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc
Confidence            345677788881         11223445567999999999999 888898887 78999999988 65544332221 1


Q ss_pred             CCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc--CCCCCCCCCC--CCcCceeeEeecccCEEEEEEC
Q 046899          128 SHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS--GGNGDKPLES--PSIGARGKYLGHEDTVEDVQFC  203 (407)
Q Consensus       128 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~  203 (407)
                      .+.                       ...+.+.+   ..++++.  .++...+|..  ..++ ...+. +...+.+++|+
T Consensus        86 ~~~-----------------------~~~~spdg---~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~s  137 (297)
T 2ojh_A           86 CNN-----------------------DHGISPDG---ALYAISDKVEFGKSAIYLLPSTGGT-PRLMT-KNLPSYWHGWS  137 (297)
T ss_dssp             BCS-----------------------CCEECTTS---SEEEEEECTTTSSCEEEEEETTCCC-CEECC-SSSSEEEEEEC
T ss_pred             ccc-----------------------ceEECCCC---CEEEEEEeCCCCcceEEEEECCCCc-eEEee-cCCCccceEEC
Confidence            100                       01111111   1233333  2344555544  3333 33333 33458999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCcee
Q 046899          204 PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIH  282 (407)
Q Consensus       204 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~  282 (407)
                      |++..++++++.++.+++|+++.... ....+..+...+.+++|+| +++.|+.++ .++.+++|+++..     ...+.
T Consensus       138 pdg~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~-----~~~~~  210 (297)
T 2ojh_A          138 PDGKSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVD-----GSSVE  210 (297)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT-----SSCEE
T ss_pred             CCCCEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCC-----CCCcE
Confidence            99944455888899999999754322 2455667888999999999 888777665 5899999998732     46677


Q ss_pred             eecCCCCCEEEEEEcCCCCCEEEEeeCC-----------CeEEEEeCCCCCcc--cccccCCCcccCCCCcCc
Q 046899          283 KFEGHSAAVLCVQWSPDKSSVFGSSAED-----------GILNIWDHEKIGEK--QDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       283 ~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----------~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d  342 (407)
                      .+..|...+.+++|+|++++|+ +++.+           +.|.+||+.+.+..  ..+.++...+..++|+||
T Consensus       211 ~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  282 (297)
T 2ojh_A          211 RITDSAYGDWFPHPSPSGDKVV-FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD  282 (297)
T ss_dssp             ECCCCSEEEEEEEECTTSSEEE-EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT
T ss_pred             EEecCCcccCCeEECCCCCEEE-EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCC
Confidence            8888888999999999999775 55544           57999999886653  334467888999999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.3e-21  Score=182.84  Aligned_cols=127  Identities=18%  Similarity=0.247  Sum_probs=105.1

Q ss_pred             ecccCEEEEEECCCCCcEEE----EEeCCCcEEEEEcCCC-----CC--C--ceeeecccCcceEEEEecCCCCCEEEEE
Q 046899          192 GHEDTVEDVQFCPSSAQEFC----SVGDDSCLILWDARSG-----ST--P--AVKVEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~----s~~~dg~i~iwd~~~~-----~~--~--~~~~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                      .+...|.+++|+|++ ++|+    +|+.|+.|++||+++.     +.  +  ....+.+|...|.+++|+|.++++|+++
T Consensus        90 ~~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           90 PMKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             cCCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            366789999999999 6777    7888999999999764     11  0  1345567999999999999448999999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899          259 SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY  327 (407)
Q Consensus       259 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~  327 (407)
                      +.||.|++||+++      +..+....+|...|++++|+|+|.+| ++|+.||+|++||++ ++....+
T Consensus       169 s~Dg~v~iwD~~~------~~~~~~~~~~~~~v~~v~wspdg~~l-asgs~dg~v~iwd~~-~~~~~~~  229 (434)
T 2oit_A          169 LADGSIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQL-AVGKQNGTVVQYLPT-LQEKKVI  229 (434)
T ss_dssp             ETTSCEEEEEESS------SEEEEEEECGGGCEEEEEECTTSSCE-EEEETTSCEEEECTT-CCEEEEE
T ss_pred             ECCCeEEEEEcCC------CcceeeccCCCCceeEEEEcCCCCEE-EEEcCCCcEEEEccC-Ccccccc
Confidence            9999999999998      66666677788999999999999976 699999999999998 4444433

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=1.6e-20  Score=175.42  Aligned_cols=177  Identities=11%  Similarity=0.104  Sum_probs=135.1

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEE----EeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVA----THTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG  153 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~----tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~  153 (407)
                      ..+.|.+.|++++|+| ++++||    +|+.|++|+|||+.+......     ..                         
T Consensus        87 ~~~~~~~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~-----~~-------------------------  135 (434)
T 2oit_A           87 LLVPMKFPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAK-----QQ-------------------------  135 (434)
T ss_dssp             EEECCSSCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTC-----SS-------------------------
T ss_pred             ccccCCCcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCc-----CC-------------------------
Confidence            4456888999999999 788888    899999999999875310000     00                         


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee
Q 046899          154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK  233 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  233 (407)
                                                 ......+..+.+|...|.+++|+|+++.+|++++.||+|++||++++.  ...
T Consensus       136 ---------------------------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--~~~  186 (434)
T 2oit_A          136 ---------------------------KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--KVC  186 (434)
T ss_dssp             ---------------------------CCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--EEE
T ss_pred             ---------------------------cceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--cee
Confidence                                       000011234457899999999999854899999999999999999875  455


Q ss_pred             eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-------CCCEEEEEEcCCCCCEEEE
Q 046899          234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-------SAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~ll~s  306 (407)
                      ....|...|.+++|+| ++++|++|+.||.|++||++.       +....+..|       ...|.+++|++++.++++.
T Consensus       187 ~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          187 ATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-------QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             EEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-------CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             eccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-------cccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence            5567889999999999 899999999999999999983       334444433       3389999999998876655


Q ss_pred             eeCCCe------EEEEeCCCCC
Q 046899          307 SAEDGI------LNIWDHEKIG  322 (407)
Q Consensus       307 ~~~d~~------i~vwd~~~~~  322 (407)
                      +..||.      +++|++++.+
T Consensus       259 ~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          259 AAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             EETTCCSSSCCEEEEEECCCTT
T ss_pred             ccCCCccCCCCceEEEEeccCC
Confidence            656643      8999998753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=7.7e-20  Score=165.34  Aligned_cols=273  Identities=8%  Similarity=0.147  Sum_probs=172.4

Q ss_pred             ccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCC-CcEEEEeCc--CCCCcccccCcC
Q 046899           50 QATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDS-PDVLIWDVE--AQPNRHAVLGAA  126 (407)
Q Consensus        50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d-g~i~vwd~~--~~~~~~~~~~~~  126 (407)
                      ++..++.+++|.   ++.   ...........|...+.+++|+| ++++|++++.+ +.|++|++.  ++.....     
T Consensus        10 ~~~~~~~v~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----   77 (343)
T 1ri6_A           10 ASPESQQIHVWN---LNH---EGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFA-----   77 (343)
T ss_dssp             EEGGGTEEEEEE---ECT---TSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEE-----
T ss_pred             eCCCCCeEEEEE---ECC---CCcEEEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeec-----
Confidence            445677888982   211   12234455567899999999999 77777777776 999999997  3321110     


Q ss_pred             CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCC---CCcCceeeEeecccCEEEEEEC
Q 046899          127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLES---PSIGARGKYLGHEDTVEDVQFC  203 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~---~~~~~~~~~~~~~~~v~~l~~~  203 (407)
                                ........       +..+.+.+.+..  .+++...++.+.+||+   ...+.+..+. ....+.+++|+
T Consensus        78 ----------~~~~~~~~-------~~~~~~s~dg~~--l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s  137 (343)
T 1ri6_A           78 ----------AESALPGS-------LTHISTDHQGQF--VFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANIS  137 (343)
T ss_dssp             ----------EEEECSSC-------CSEEEECTTSSE--EEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEEC
T ss_pred             ----------cccccCCC-------CcEEEEcCCCCE--EEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEEC
Confidence                      00000000       111111222211  1233344777889988   3334444443 33468899999


Q ss_pred             CCCCcEEEEEe-CCCcEEEEEcCC-CCCCcee--eec-ccCcceEEEEecCCCCCEEE-EEeCCCcEEEEeCCCCCCCCC
Q 046899          204 PSSAQEFCSVG-DDSCLILWDARS-GSTPAVK--VEK-AHNADIHCVDWNPHDVNLIL-TGSADNSIHMFDRRKLTSDGV  277 (407)
Q Consensus       204 ~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~--~~~-~~~~~v~~l~~~~~~~~~l~-tg~~dg~i~vwd~~~~~~~~~  277 (407)
                      |++ +.+++++ .++.|.+||+.+ ++.....  ... .....+.+++|+| ++++++ ++..++.|.+||+....    
T Consensus       138 ~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~----  211 (343)
T 1ri6_A          138 PDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPH----  211 (343)
T ss_dssp             TTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTT----
T ss_pred             CCC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----
Confidence            999 5555555 899999999987 5411111  222 2345788999999 787665 44578999999996421    


Q ss_pred             CCc--eeeec---CC---CCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC----CCcccccccCCCcccCCCCcCcchh
Q 046899          278 GSP--IHKFE---GH---SAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK----IGEKQDYGELKYPIIHPAYSSDMLD  345 (407)
Q Consensus       278 ~~~--~~~~~---~h---~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~d~~~  345 (407)
                      ++.  ...+.   ..   ...+.+++|+|++++|++++..++.|.+||+..    .+.+..+..+.. +..++|+||   
T Consensus       212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~d---  287 (343)
T 1ri6_A          212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHS---  287 (343)
T ss_dssp             SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTT---
T ss_pred             CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCC---
Confidence            222  22222   11   346778999999998887877899999999983    233334444333 778888887   


Q ss_pred             ccccceeeeeEeeCccceeeeEE-EeeeEEEeecc
Q 046899          346 IETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRMI  379 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~~  379 (407)
                                     +..|++++ .++.|+||++.
T Consensus       288 ---------------g~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          288 ---------------GKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             ---------------SSEEEEECTTTCEEEEEEEE
T ss_pred             ---------------CCEEEEecCCCCeEEEEEEc
Confidence                           77677666 57899999664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=2.8e-20  Score=169.09  Aligned_cols=264  Identities=8%  Similarity=0.023  Sum_probs=186.4

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeC-------CCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTD-------SPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG  153 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~  153 (407)
                      .....+..++|+| +++.|++++.       ++.|.+||..+++....+.....                        +.
T Consensus        38 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~------------------------~~   92 (353)
T 3vgz_A           38 AVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK------------------------PF   92 (353)
T ss_dssp             EEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC------------------------CC
T ss_pred             hhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC------------------------cc
Confidence            4566789999999 6666666653       56899999987765444322111                        11


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC---------EEEEEECCCCCcEEEEE-eCCCcEEEEE
Q 046899          154 SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT---------VEDVQFCPSSAQEFCSV-GDDSCLILWD  223 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---------v~~l~~~~~~~~~l~s~-~~dg~i~iwd  223 (407)
                      ...+.+.+.  ..+++...++.+.+||..+++.+..+..+...         +.+++|+|++..+++++ +.++.|.+||
T Consensus        93 ~~~~s~dg~--~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d  170 (353)
T 3vgz_A           93 GATINNTTQ--TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD  170 (353)
T ss_dssp             SEEEETTTT--EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred             eEEECCCCC--EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence            112222222  12344455678899999988887777654322         78999999994444444 3588999999


Q ss_pred             cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC----CCCCEEEEEEcCC
Q 046899          224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG----HSAAVLCVQWSPD  299 (407)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----h~~~v~~v~~~~~  299 (407)
                      +.+++  ....+..+...+.+++|+| +++.+++++.++.|.+||+.+      ++.+..+..    +...+.+++|+|+
T Consensus       171 ~~~~~--~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~s~d  241 (353)
T 3vgz_A          171 GGNIK--LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTAD------NKILSRKKLLDDGKEHFFINISLDTA  241 (353)
T ss_dssp             TTTTE--EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTT------TEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred             CCCCc--eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCC------CeEEEEEEcCCCCCCcccceEEECCC
Confidence            99877  4555554666688999999 899999999999999999998      777777654    5567889999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE-EeeeEEEeec
Q 046899          300 KSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRM  378 (407)
Q Consensus       300 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~  378 (407)
                      +++++++...++.|.+||+.+++....+.....  ..++|+||                  +..++... .++.|.+||.
T Consensus       242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~d------------------g~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          242 RQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPA------------------RNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             TTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETT------------------TTEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCC------------------CCEEEEEECCCCeEEEEEC
Confidence            998887777779999999998887766654332  45667776                  66555444 6789999999


Q ss_pred             cccccCChHHHHHHHhhcccceeEeeccC
Q 046899          379 IDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       379 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .      +++.+..+..+ ..+.+++|++
T Consensus       302 ~------~~~~~~~~~~~-~~~~~~~~s~  323 (353)
T 3vgz_A          302 K------SYKVVKTFDTP-THPNSLALSA  323 (353)
T ss_dssp             T------TTEEEEEEECC-SEEEEEEECT
T ss_pred             C------CCeEEEEEecC-CCCCeEEEcC
Confidence            7      55555444433 3567888874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.85  E-value=1e-20  Score=181.61  Aligned_cols=262  Identities=7%  Similarity=-0.034  Sum_probs=186.1

Q ss_pred             EeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccc
Q 046899           91 ELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASK  170 (407)
Q Consensus        91 ~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (407)
                      ++| ++.++++++.|++|.+||..+++.+..+..+..                        +..+.+.+.|   ..+.++
T Consensus       145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~------------------------~~~v~~spdg---~~l~v~  196 (543)
T 1nir_A          145 LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA------------------------VHISRMSASG---RYLLVI  196 (543)
T ss_dssp             CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT------------------------EEEEEECTTS---CEEEEE
T ss_pred             cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc------------------------cceEEECCCC---CEEEEE
Confidence            677 788999999999999999998876655432110                        0011122222   346666


Q ss_pred             cCCCCCCCCCC--CCcCceeeEeecccCEEEEEECC----CCCcEEEEEe-CCCcEEEEEcCCCCCCceeeecc------
Q 046899          171 SGGNGDKPLES--PSIGARGKYLGHEDTVEDVQFCP----SSAQEFCSVG-DDSCLILWDARSGSTPAVKVEKA------  237 (407)
Q Consensus       171 ~~~~~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~~----~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~------  237 (407)
                      +.++.+.+||+  .+++.+..+. +...+..++|+|    ++ +++++++ .+++|.+||..+.+  ....+..      
T Consensus       197 ~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~g~~~~  272 (543)
T 1nir_A          197 GRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVD  272 (543)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSS
T ss_pred             CCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccc--cceeecccCcccC
Confidence            67799999999  7888888776 455689999999    99 6777776 58999999999887  4554433      


Q ss_pred             ----cCc-ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee--eecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          238 ----HNA-DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH--KFEGHSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       238 ----~~~-~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                          |.. .+.++.++|.+..++++...++.|.+||...      .+.+.  .+. +...+.+++|+|+|+++++++..+
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~------~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~  345 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD------IDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNS  345 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT------SSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGG
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC------CCcceeEEec-cCcCccCceECCCCCEEEEEecCC
Confidence                223 6889999995566777888899999999987      34333  444 566788999999999988787789


Q ss_pred             CeEEEEeCCCCCcccccccCCCcc--cCCCCcCcchhccccceeeeeEeeCccceeeeEE-EeeeEEEeeccccc-cCCh
Q 046899          311 GILNIWDHEKIGEKQDYGELKYPI--IHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT-MVKVLEIWRMIDLI-YRPE  386 (407)
Q Consensus       311 ~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~i~iwd~~~~~-~~~~  386 (407)
                      ++|.+||+.+++....+.....|-  ....|                .....+..++++. .|++|.|||+.... ....
T Consensus       346 ~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~----------------~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~  409 (543)
T 1nir_A          346 NKVAVIDSKDRRLSALVDVGKTPHPGRGANF----------------VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  409 (543)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSBCCTTCEEE----------------EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             CeEEEEECCCCeEEEeeccCCCCCCCCCccc----------------CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence            999999999988777666432221  11111                1111244455554 47899999997211 0111


Q ss_pred             HHHHHHHhhcccceeEeeccC
Q 046899          387 EEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       387 ~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      +++++.+.+|.+.+..|+|+|
T Consensus       410 ~~~v~~l~~~g~~~~~v~~~p  430 (543)
T 1nir_A          410 WKKVAELQGQGGGSLFIKTHP  430 (543)
T ss_dssp             TSEEEEEECSCSCCCCEECCT
T ss_pred             CeEEEEEEcCCCCceEEEcCC
Confidence            788889999988889998875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=5.2e-19  Score=159.36  Aligned_cols=270  Identities=10%  Similarity=0.036  Sum_probs=173.9

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcCCCC-cccccCc
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDVEAQPN-RHAVLGA  125 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~-~~~~~~~  125 (407)
                      +++...++.+++|-     .+..  ...... ..+...+ .++|+| +++ +++++..++.|.+||..+++. ...+..+
T Consensus        13 ~v~~~~~~~v~~~d-----~~~~--~~~~~~-~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A           13 IVVEQHLRRISFFS-----TDTL--EILNQI-TLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             EEEEGGGTEEEEEE-----TTTC--CEEEEE-ECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             EEEecCCCeEEEEe-----Cccc--ceeeeE-EccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            45566677888881     1111  111111 2345556 999999 666 555555589999999987765 3332222


Q ss_pred             CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCC-C--CCCCCCCCCcCceeeEeecccCEEEEEE
Q 046899          126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGG-N--GDKPLESPSIGARGKYLGHEDTVEDVQF  202 (407)
Q Consensus       126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~i~i~d~~~~~~~~~~~~~~~~v~~l~~  202 (407)
                      ...                 ..      ...+.+.+.   .+++...+ +  .+.+||..+++.+..+.. .....+++|
T Consensus        83 ~~~-----------------~~------~~~~s~dg~---~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~  135 (331)
T 3u4y_A           83 QSS-----------------MA------DVDITPDDQ---FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAI  135 (331)
T ss_dssp             SSC-----------------CC------CEEECTTSS---EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEE
T ss_pred             CCC-----------------cc------ceEECCCCC---EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEE
Confidence            111                 11      011112222   22322223 2  799999998888777654 445689999


Q ss_pred             CCCCCcEEEEEeCCCc-EEEEEcCCCCCCce--eeecccCcceEEEEecCCCCCEE-EEEeCCCcEEEEeCCCCCCCCCC
Q 046899          203 CPSSAQEFCSVGDDSC-LILWDARSGSTPAV--KVEKAHNADIHCVDWNPHDVNLI-LTGSADNSIHMFDRRKLTSDGVG  278 (407)
Q Consensus       203 ~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~~~~~~~  278 (407)
                      +|++..+++++..++. |.+|++........  ............++|+| +++++ +++..++.|++||+++      +
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~------~  208 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQN------P  208 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSS------T
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCC------C
Confidence            9999556666677788 99999986442100  12223445678999999 88755 5555689999999987      6


Q ss_pred             Cc---eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc--cccccc----CCCcc---cCCCCcCcchhc
Q 046899          279 SP---IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE--KQDYGE----LKYPI---IHPAYSSDMLDI  346 (407)
Q Consensus       279 ~~---~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--~~~~~~----~~~~v---~~~~~s~d~~~~  346 (407)
                      +.   +..+..+ ..+..++|+|+|++++++...++.|.+||+.+++.  +..+..    ...+.   ..++|+||    
T Consensus       209 ~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----  283 (331)
T 3u4y_A          209 ENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKT----  283 (331)
T ss_dssp             TSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTT----
T ss_pred             cccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCC----
Confidence            76   7777644 56789999999998877777789999999998665  222221    12222   23577777    


Q ss_pred             cccceeeeeEeeCccceeeeEEE-eeeEEEeeccc
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLTM-VKVLEIWRMID  380 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~~-d~~i~iwd~~~  380 (407)
                                    +..++..+. ++.|+|||+..
T Consensus       284 --------------g~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          284 --------------ETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             --------------SSEEEEEETTTTEEEEEETTS
T ss_pred             --------------CCEEEEecCCCCcEEEEEecC
Confidence                          777765554 55999999973

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.84  E-value=3.1e-20  Score=185.43  Aligned_cols=303  Identities=13%  Similarity=0.047  Sum_probs=186.4

Q ss_pred             CeeEEEEeec--ccccCccceEEEEeecccCcccCCcceeeEEEee-CCC---ceEEEEEeCCCCeEEEEeeCC------
Q 046899           38 PSLSCRWGPQ--LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTII-HPG---EVNRIRELPQNSKIVATHTDS------  105 (407)
Q Consensus        38 p~~s~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~---~v~~l~~~~~~~~~l~tg~~d------  105 (407)
                      ...++.|.|+  ++..+.++.+++|     +....    ....... |..   .|.+++|+| ++++|++++.+      
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~-----d~~~g----~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~   87 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLW-----NVETN----TSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQH   87 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEB-----CGGGC----CCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSS
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEE-----ECCCC----cEEEEeccccccccccceEEECC-CCCEEEEEecCccceee
Confidence            3455678774  3333667788888     22221    2223333 443   499999999 88999998765      


Q ss_pred             ---CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC
Q 046899          106 ---PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP  182 (407)
Q Consensus       106 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~  182 (407)
                         +.|.+||+.+++.. .+......             ..       ......+.++|.   .+++++. +.+.+||..
T Consensus        88 ~~~~~i~~~d~~~~~~~-~l~~~~~~-------------~~-------~~~~~~~SPdG~---~la~~~~-~~i~~~~~~  142 (723)
T 1xfd_A           88 SYTGYYVLSKIPHGDPQ-SLDPPEVS-------------NA-------KLQYAGWGPKGQ---QLIFIFE-NNIYYCAHV  142 (723)
T ss_dssp             CCCSEEEEEESSSCCCE-ECCCTTCC-------------SC-------CCSBCCBCSSTT---CEEEEET-TEEEEESSS
T ss_pred             cceeeEEEEECCCCceE-eccCCccc-------------cc-------cccccEECCCCC---EEEEEEC-CeEEEEECC
Confidence               66778888776541 11111000             00       001122222332   2444433 678888888


Q ss_pred             CcCceeeEeecccCE------------------EEEEECCCCCcEEEEEeCCC---------------------------
Q 046899          183 SIGARGKYLGHEDTV------------------EDVQFCPSSAQEFCSVGDDS---------------------------  217 (407)
Q Consensus       183 ~~~~~~~~~~~~~~v------------------~~l~~~~~~~~~l~s~~~dg---------------------------  217 (407)
                      +++.......+...+                  .+++|+|+| +.|++++.|+                           
T Consensus       143 ~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (723)
T 1xfd_A          143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA  221 (723)
T ss_dssp             SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred             CCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence            877766555444333                  789999999 7777776543                           


Q ss_pred             -------cEEEEEcCCCCCCceeeecc------cCcceEEEEecCCCCCEEEEEeC----CCcEEEEeCCCCCCCCCCCc
Q 046899          218 -------CLILWDARSGSTPAVKVEKA------HNADIHCVDWNPHDVNLILTGSA----DNSIHMFDRRKLTSDGVGSP  280 (407)
Q Consensus       218 -------~i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~l~tg~~----dg~i~vwd~~~~~~~~~~~~  280 (407)
                             .|++||+.+++  ....+..      +...+..++|+| +++++++...    +..|++||+.+      ++.
T Consensus       222 G~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~------g~~  292 (723)
T 1xfd_A          222 GSENPSISLHVIGLNGPT--HDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT------GVC  292 (723)
T ss_dssp             TSCCCEEEEEEEESSSSC--CCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT------CCE
T ss_pred             CCCCCeeEEEEEECCCCc--eeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCC------Ccc
Confidence                   79999998876  2333333      366789999999 8888877643    35799999988      666


Q ss_pred             eeeecC-CCCCE----EEEEEcCCCCCEEEE-eeCCC------eEEEEeCCCCCc---ccccccCCCcccC-CCCcCcch
Q 046899          281 IHKFEG-HSAAV----LCVQWSPDKSSVFGS-SAEDG------ILNIWDHEKIGE---KQDYGELKYPIIH-PAYSSDML  344 (407)
Q Consensus       281 ~~~~~~-h~~~v----~~v~~~~~~~~ll~s-~~~d~------~i~vwd~~~~~~---~~~~~~~~~~v~~-~~~s~d~~  344 (407)
                      ...+.. +...+    ..++|+|+|++|+.. +..++      .|.+||+...+.   ...+......+.. ++||||  
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd--  370 (723)
T 1xfd_A          293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK--  370 (723)
T ss_dssp             EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT--
T ss_pred             eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC--
Confidence            555543 33444    378999999987654 55677      577777323333   4444433333333 467777  


Q ss_pred             hccccceeeeeEeeCccceeeeEEEe---eeEEEeeccccccCChHHHHHHHhh---cccceeEeeccC
Q 046899          345 DIETKLLTSIGMHLIHGRLLVCLTMV---KVLEIWRMIDLIYRPEEEVLAELDK---FKSHIFGCDKSC  407 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~i~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~---h~~~v~~~~~s~  407 (407)
                                      +..|+..+.+   +.++||++....    +.....+.+   |...+..++||+
T Consensus       371 ----------------g~~l~~~~~~~~~~~~~l~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~sp  419 (723)
T 1xfd_A          371 ----------------GNKIYFLSTEDLPRRRQLYSANTVG----NFNRQCLSCDLVENCTYFSASFSH  419 (723)
T ss_dssp             ----------------TTEEEEEESSSCTTCCEEEEECSST----TCCCBCSSTTSSSSCCCCEEEECT
T ss_pred             ----------------CCEEEEEEcCCCCcceEEEEEeCCC----CCCcceecccccCCCCeEEEEECC
Confidence                            7777765555   789999986211    111222333   677788888885

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.84  E-value=8e-21  Score=190.22  Aligned_cols=286  Identities=11%  Similarity=0.066  Sum_probs=193.5

Q ss_pred             CCceEEEEEeCCCCeEEEEeeC-CC-----cEEEEeCcCCCCcccccCcCC-----------------------------
Q 046899           83 PGEVNRIRELPQNSKIVATHTD-SP-----DVLIWDVEAQPNRHAVLGAAD-----------------------------  127 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~-dg-----~i~vwd~~~~~~~~~~~~~~~-----------------------------  127 (407)
                      ...|.+++|+| +|++|++++. |+     .|.+||+.+++....+..+..                             
T Consensus        36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            55799999999 8999999988 88     899999998875444332211                             


Q ss_pred             -CCCCC-------CCcEEEEecccc---cc-ccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc
Q 046899          128 -SHPDL-------DQSVVLWSIQDH---VS-ALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED  195 (407)
Q Consensus       128 -~~~~~-------d~~i~~w~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~  195 (407)
                       ..++.       ++.+.+||+.++   .. .+..+...............+++++ ++.+.+||..+++.......+..
T Consensus       115 ~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          115 QWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             EECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             EECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence             11222       578899999876   32 2333323333333333333455554 46899999988776555444433


Q ss_pred             C----------------EEEEEECCCCCcEEEEEeCCC---------------------------------cEEEEEcCC
Q 046899          196 T----------------VEDVQFCPSSAQEFCSVGDDS---------------------------------CLILWDARS  226 (407)
Q Consensus       196 ~----------------v~~l~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~~~  226 (407)
                      .                +..++|+|+| +.|++++.|+                                 .|.+||+.+
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             ceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            2                4789999999 6777776665                                 789999988


Q ss_pred             -CCCCceeeec--ccCcceEEEEecCCCCCEEEEEeC-----CCcEEEEeCCCCCCCCCCCceeeecCCCC----CEEEE
Q 046899          227 -GSTPAVKVEK--AHNADIHCVDWNPHDVNLILTGSA-----DNSIHMFDRRKLTSDGVGSPIHKFEGHSA----AVLCV  294 (407)
Q Consensus       227 -~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~h~~----~v~~v  294 (407)
                       ++  ......  .|...+..++| | +++.|++++.     +..|++||+.+      ++....+..+..    .+.++
T Consensus       273 ~~~--~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~  342 (741)
T 2ecf_A          273 QAQ--TQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLAS------NQQRVLAHETSPTWVPLHNSL  342 (741)
T ss_dssp             TCC--CEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTT------CCEEEEEEEECSSCCCCCSCC
T ss_pred             CCc--eEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCC------CceEEEEEcCCCCcCCcCCce
Confidence             76  232222  47788999999 9 8998887654     56899999998      666666655443    45689


Q ss_pred             EEcCCCCCEEEEeeCCCeEEEEeCCC-CCcccccccCCCcccCC-CCcCcchhccccceeeeeEeeCccceee-eEEEee
Q 046899          295 QWSPDKSSVFGSSAEDGILNIWDHEK-IGEKQDYGELKYPIIHP-AYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVK  371 (407)
Q Consensus       295 ~~~~~~~~ll~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~-~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~  371 (407)
                      +|+|+|+ ++++++.|+.++||.+.. ++ ...+..+...+..+ .||||                  +..|+ +++.++
T Consensus       343 ~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~d------------------g~~l~~~~~~~~  402 (741)
T 2ecf_A          343 RFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEK------------------AGLAYFRAGIES  402 (741)
T ss_dssp             EECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETT------------------TTEEEEEECSSC
T ss_pred             EECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCC------------------CCEEEEEEeCCC
Confidence            9999999 667888999888887763 33 66666666666665 47777                  66665 444455


Q ss_pred             --eEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          372 --VLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       372 --~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                        .++||++..     .+..+..+.+ ...+.+++||+
T Consensus       403 ~~~~~l~~~~~-----~g~~~~~l~~-~~~~~~~~~sp  434 (741)
T 2ecf_A          403 ARESQIYAVPL-----QGGQPQRLSK-APGMHSASFAR  434 (741)
T ss_dssp             TTCBEEEEEET-----TCCCCEECCC-SCSEEEEEECT
T ss_pred             CceEEEEEEEc-----CCCCeeeccc-CCCceEEEECC
Confidence              899999862     1222333443 55677888875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=1.5e-20  Score=165.98  Aligned_cols=203  Identities=14%  Similarity=0.102  Sum_probs=148.9

Q ss_pred             CCCCCCCCCCCC-cCceeeEeec-ccCEEEEEECCCCCcEEEEEe--CCCcEEEEEcCCCCCCceeeecccCcceEEEEe
Q 046899          172 GGNGDKPLESPS-IGARGKYLGH-EDTVEDVQFCPSSAQEFCSVG--DDSCLILWDARSGSTPAVKVEKAHNADIHCVDW  247 (407)
Q Consensus       172 ~~~~i~i~d~~~-~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  247 (407)
                      .++.+.+||..+ ++.......+ ...+.+++|+|++ .+|++++  .++...+|.++.... ....+.. ...+..++|
T Consensus        60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~  136 (297)
T 2ojh_A           60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGG-TPRLMTK-NLPSYWHGW  136 (297)
T ss_dssp             ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCC-CCEECCS-SSSEEEEEE
T ss_pred             cCCeEEEEeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCC-ceEEeec-CCCccceEE
Confidence            477899999988 7776666555 3678999999999 7888888  345566665543221 1333333 334889999


Q ss_pred             cCCCCCEEE-EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC-CCCccc
Q 046899          248 NPHDVNLIL-TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE-KIGEKQ  325 (407)
Q Consensus       248 ~~~~~~~l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~-~~~~~~  325 (407)
                      +| +++.|+ +++.++.+++|+++..     ......+..|...+.+++|+|+++++++++..++.+++|++. ......
T Consensus       137 sp-dg~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~  210 (297)
T 2ojh_A          137 SP-DGKSFTYCGIRDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE  210 (297)
T ss_dssp             CT-TSSEEEEEEEETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred             CC-CCCEEEEEECCCCceEEEEEECC-----CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence            99 788776 7888999999997542     244566777888999999999999876556569999999987 455666


Q ss_pred             ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe-----------eeEEEeeccccccCChHHH--HHH
Q 046899          326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV-----------KVLEIWRMIDLIYRPEEEV--LAE  392 (407)
Q Consensus       326 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d-----------~~i~iwd~~~~~~~~~~~~--~~~  392 (407)
                      .+..+...+..+.|+||                  +..|+.++.+           +.|++||+.      +++.  +..
T Consensus       211 ~~~~~~~~~~~~~~s~d------------------g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~------~~~~~~~~~  266 (297)
T 2ojh_A          211 RITDSAYGDWFPHPSPS------------------GDKVVFVSYDADVFDHPRDLDVRVQLMDMD------GGNVETLFD  266 (297)
T ss_dssp             ECCCCSEEEEEEEECTT------------------SSEEEEEEEETTCCSCCSSEEEEEEEEETT------SCSCEEEEE
T ss_pred             EEecCCcccCCeEECCC------------------CCEEEEEEcCCCCCcccccCceEEEEEecC------CCCceeeec
Confidence            67667777777888887                  7778877766           689999997      3333  233


Q ss_pred             HhhcccceeEeeccC
Q 046899          393 LDKFKSHIFGCDKSC  407 (407)
Q Consensus       393 ~~~h~~~v~~~~~s~  407 (407)
                      +.+|...|.+++||+
T Consensus       267 ~~~~~~~~~~~~~sp  281 (297)
T 2ojh_A          267 LFGGQGTMNSPNWSP  281 (297)
T ss_dssp             EEESTTTSCSCCBCT
T ss_pred             cCCCCcccccceECC
Confidence            447888899999985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=9.9e-20  Score=188.74  Aligned_cols=195  Identities=11%  Similarity=0.023  Sum_probs=153.9

Q ss_pred             CCCCCCCCCCCCcCceeeEee-----------cccCEEEEEEC-CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          172 GGNGDKPLESPSIGARGKYLG-----------HEDTVEDVQFC-PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~~~~~~~-----------~~~~v~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                      .++.+.+|+.... .+..+..           |...+.+++|+ |+| ..+++++ ++.|.+|++..+.   ...+..|.
T Consensus       263 ~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~---~~~~~~~~  336 (1045)
T 1k32_A          263 KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTY---VLKVPEPL  336 (1045)
T ss_dssp             ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSB---EEECSCCS
T ss_pred             eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCc---eEEccCCC
Confidence            5778888888433 3334433           34478999999 999 7777777 7899999998765   33455677


Q ss_pred             c-ceEEEEecCCCCCEEEEEeCCCcEE-EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          240 A-DIHCVDWNPHDVNLILTGSADNSIH-MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       240 ~-~v~~l~~~~~~~~~l~tg~~dg~i~-vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      . .+..++|+  +++.|+.++.++.+. +||+..      ++ ...+..|...+..++|+|+|++| ++++.++.|++||
T Consensus       337 ~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~------~~-~~~l~~~~~~~~~~~~SpDG~~l-a~~~~~~~v~~~d  406 (1045)
T 1k32_A          337 RIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRT------GK-AEKFEENLGNVFAMGVDRNGKFA-VVANDRFEIMTVD  406 (1045)
T ss_dssp             CEEEEEECSS--SEEEEEEEETTEEEEEEEETTT------CC-EEECCCCCCSEEEEEECTTSSEE-EEEETTSEEEEEE
T ss_pred             cceEEeeeEc--CCCeEEEEECCCceEEEEECCC------CC-ceEecCCccceeeeEECCCCCEE-EEECCCCeEEEEE
Confidence            7 89999999  778888888888888 899886      43 34455788899999999999966 6889999999999


Q ss_pred             CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe----------eeEEEeeccccccCChH
Q 046899          318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV----------KVLEIWRMIDLIYRPEE  387 (407)
Q Consensus       318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d----------~~i~iwd~~~~~~~~~~  387 (407)
                      +.+++.......+...+..++||||                  +.+|+.++.+          +.|++||+.      ++
T Consensus       407 ~~tg~~~~~~~~~~~~v~~~~~SpD------------------G~~la~~~~~~~~~~~~~~~~~i~l~d~~------~g  462 (1045)
T 1k32_A          407 LETGKPTVIERSREAMITDFTISDN------------------SRFIAYGFPLKHGETDGYVMQAIHVYDME------GR  462 (1045)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEECTT------------------SCEEEEEEEECSSTTCSCCEEEEEEEETT------TT
T ss_pred             CCCCceEEeccCCCCCccceEECCC------------------CCeEEEEecCccccccCCCCCeEEEEECC------CC
Confidence            9988776666678888999999999                  7888877765          499999997      45


Q ss_pred             HHHHHHhhcccceeEeeccC
Q 046899          388 EVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       388 ~~~~~~~~h~~~v~~~~~s~  407 (407)
                      + +..+.+|...+.+++||+
T Consensus       463 ~-~~~l~~~~~~~~~~~~sp  481 (1045)
T 1k32_A          463 K-IFAATTENSHDYAPAFDA  481 (1045)
T ss_dssp             E-EEECSCSSSBEEEEEECT
T ss_pred             c-EEEeeCCCcccCCceEcC
Confidence            4 556777888888999985

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=6.4e-19  Score=176.38  Aligned_cols=260  Identities=8%  Similarity=0.030  Sum_probs=176.7

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC--CcccccCcCC------CCCCC-------CCcEEEEeccccccccc
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP--NRHAVLGAAD------SHPDL-------DQSVVLWSIQDHVSALA  149 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~--~~~~~~~~~~------~~~~~-------d~~i~~w~~~~~~~~~~  149 (407)
                      .|.+++|+| ++++|++++. +.|.+||+.++.  ....+..+..      ..++.       ++.|.+|++.++.....
T Consensus       110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred             CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence            488999999 8888988886 899999999872  2223333221      22332       66799999887532211


Q ss_pred             cC---------------------CCCCcccccCCCCCccccccCCC---------------------------------C
Q 046899          150 AE---------------------PGSAKSTASGGANSKNASKSGGN---------------------------------G  175 (407)
Q Consensus       150 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~  175 (407)
                      ..                     .....+.++|   ..+++++.++                                 .
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg---~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD---SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS---SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCC---CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            11                     1122333333   3355544333                                 6


Q ss_pred             CCCCCCCC-cCceeeEe--ecccCEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCCCCCCceeeecccCc----ceE
Q 046899          176 DKPLESPS-IGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGD-----DSCLILWDARSGSTPAVKVEKAHNA----DIH  243 (407)
Q Consensus       176 i~i~d~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~----~v~  243 (407)
                      +.+||..+ ++......  .|...+..++| |+| +.|+.++.     +..|.+||+.+++  .......+..    .+.
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQ--QRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCC--EEEEEEEECSSCCCCCS
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCc--eEEEEEcCCCCcCCcCC
Confidence            67788887 76554432  37788999999 999 66665543     5789999999887  4444444432    456


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEE-EEcCCCCCEEEEeeCCC--eEEEEeCCC
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCV-QWSPDKSSVFGSSAEDG--ILNIWDHEK  320 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v-~~~~~~~~ll~s~~~d~--~i~vwd~~~  320 (407)
                      .++|+| +++++++++.||.+++|.+...     +. ...+..|...|..+ .|+|+++.|+++++.++  .++||++..
T Consensus       341 ~~~~sp-dg~~~~~~~~~g~~~l~~~~~~-----~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          341 SLRFLD-DGSILWSSERTGFQHLYRIDSK-----GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCEECT-TSCEEEEECTTSSCEEEEECSS-----SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             ceEECC-CCeEEEEecCCCccEEEEEcCC-----CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            899999 8889999999998888877631     34 77888888889888 59999998876777776  899999864


Q ss_pred             -CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe----eeEEEeecc
Q 046899          321 -IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV----KVLEIWRMI  379 (407)
Q Consensus       321 -~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d----~~i~iwd~~  379 (407)
                       ++....+.. ...+..++||||                  +..++....+    +.+.+|+..
T Consensus       414 ~g~~~~~l~~-~~~~~~~~~spd------------------g~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          414 QGGQPQRLSK-APGMHSASFARN------------------ASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             TCCCCEECCC-SCSEEEEEECTT------------------SSEEEEEEEETTEEEEEEEEETT
T ss_pred             CCCCeeeccc-CCCceEEEECCC------------------CCEEEEEecCCCCCCeEEEEEcC
Confidence             444555544 455667888888                  6666544433    478888864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.81  E-value=5.5e-19  Score=159.20  Aligned_cols=234  Identities=11%  Similarity=0.066  Sum_probs=160.4

Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccc
Q 046899           90 RELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNAS  169 (407)
Q Consensus        90 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (407)
                      .|.+..+.++++++.++.|.+||..+++....+..+...                . .+       .+.+.+.  ..+++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------------~-~~-------~~s~dg~--~l~~~   57 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDF----------------V-DT-------AITSDCS--NVVVT   57 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCE----------------E-EE-------EECSSSC--EEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCc----------------c-eE-------EEcCCCC--EEEEE
Confidence            345556777889999999999999887655443321110                0 11       1111221  12333


Q ss_pred             ccCCCCCCCCCCCCcCc-eeeEeecccCEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCCCceeeecccCcceEEE
Q 046899          170 KSGGNGDKPLESPSIGA-RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS---CLILWDARSGSTPAVKVEKAHNADIHCV  245 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~l  245 (407)
                      ...++.+.+||..+++. ...+..+..+..+++|+|++ ++++++..++   .|.+||+.+++  ....+. ......++
T Consensus        58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~--~~~~~~-~~~~~~~~  133 (331)
T 3u4y_A           58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNK--FISTIP-IPYDAVGI  133 (331)
T ss_dssp             ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTE--EEEEEE-CCTTEEEE
T ss_pred             eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCC--eEEEEE-CCCCccce
Confidence            44577889999988887 77777777666669999999 6677555553   89999998877  444443 34556899


Q ss_pred             EecCCCCC-EEEEEeCCCc-EEEEeCCCCCCCCCCCce----eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          246 DWNPHDVN-LILTGSADNS-IHMFDRRKLTSDGVGSPI----HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       246 ~~~~~~~~-~l~tg~~dg~-i~vwd~~~~~~~~~~~~~----~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      +|+| +++ +++++..++. |.+|++..      ...+    .........+..++|+|+|+++++++..++.|++||+.
T Consensus       134 ~~sp-dg~~l~~~~~~~~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          134 AISP-NGNGLILIDRSSANTVRRFKIDA------DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             EECT-TSSCEEEEEETTTTEEEEEEECT------TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EECC-CCCEEEEEecCCCceEEEEEECC------CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            9999 776 4555566688 99999985      2222    12223445689999999999888788889999999999


Q ss_pred             CCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE-EEeeeEEEeecc
Q 046899          320 KIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL-TMVKVLEIWRMI  379 (407)
Q Consensus       320 ~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~i~iwd~~  379 (407)
                      +++.   +..+.. ...+.+++|+||                  +.+++.. ..++.|.+||+.
T Consensus       207 ~~~~~~~~~~~~~-~~~~~~~~~spd------------------g~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          207 NPENITLLNAVGT-NNLPGTIVVSRD------------------GSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             STTSCEEEEEEEC-SSCCCCEEECTT------------------SSEEEEECSSEEEEEEEETT
T ss_pred             CCcccceeeeccC-CCCCceEEECCC------------------CCEEEEEEcCCCEEEEEECC
Confidence            8877   555554 355678888888                  6655433 457789999987

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=1.4e-18  Score=157.76  Aligned_cols=255  Identities=8%  Similarity=0.060  Sum_probs=160.8

Q ss_pred             eeeEEEeeCCCceEEEEEeCCCCeEEEEeeC--CCcEEEEeCcCCCCcc--cccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTD--SPDVLIWDVEAQPNRH--AVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~--dg~i~vwd~~~~~~~~--~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      ........+...+..++|+| ++++++++..  ++.|.+||+.++....  .+..+..                      
T Consensus        30 ~~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~----------------------   86 (347)
T 3hfq_A           30 LTNDGLLAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT----------------------   86 (347)
T ss_dssp             EEEEEEEEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC----------------------
T ss_pred             EEEeeeeeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCC----------------------
Confidence            33445556778889999999 7885545432  6899999996543211  1110100                      


Q ss_pred             cCCCCCcccccCCCCCcccccc-CCCCCCCCCCCC-c--CceeeEee---------cccCEEEEEECCCCCcEEEEEeCC
Q 046899          150 AEPGSAKSTASGGANSKNASKS-GGNGDKPLESPS-I--GARGKYLG---------HEDTVEDVQFCPSSAQEFCSVGDD  216 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~-~--~~~~~~~~---------~~~~v~~l~~~~~~~~~l~s~~~d  216 (407)
                       .+..+.+.+.|.   .++++. .++.+.+|++.. +  +.+..+..         +...+.+++|+|++ +++++...+
T Consensus        87 -~p~~~a~spdg~---~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~  161 (347)
T 3hfq_A           87 -PPAYVAVDEARQ---LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGS  161 (347)
T ss_dssp             -CCSEEEEETTTT---EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTT
T ss_pred             -CCEEEEECCCCC---EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCC
Confidence             111112222222   233333 567788888752 2  22222221         12248899999999 577777788


Q ss_pred             CcEEEEEcC-CCCCCceeeecc-cCcceEEEEecCCCCCEEEE-EeCCCcEEEEeCCCCCCCCCCC--ceeeecCCC---
Q 046899          217 SCLILWDAR-SGSTPAVKVEKA-HNADIHCVDWNPHDVNLILT-GSADNSIHMFDRRKLTSDGVGS--PIHKFEGHS---  288 (407)
Q Consensus       217 g~i~iwd~~-~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~t-g~~dg~i~vwd~~~~~~~~~~~--~~~~~~~h~---  288 (407)
                      +.|.+||+. ++.......... ....+..++|+| +++++++ +..++.|.+|++....    ++  .+..+....   
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~~~~~~~  236 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQT----GAFTQLGIVKTIPADY  236 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTT----TEEEEEEEEESSCTTC
T ss_pred             CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----CceEEeeeeeecCCCC
Confidence            999999998 443111111122 234678899999 8885555 5678899999987411    22  233333222   


Q ss_pred             ---CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC---CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccc
Q 046899          289 ---AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI---GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR  362 (407)
Q Consensus       289 ---~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~  362 (407)
                         ..+..++|+|+|++|+++...++.|.+||+...   +.+..+..+...+.+++|+||                  +.
T Consensus       237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd------------------g~  298 (347)
T 3hfq_A          237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT------------------EA  298 (347)
T ss_dssp             CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT------------------SS
T ss_pred             CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC------------------CC
Confidence               458999999999988778888999999999732   334445555556778888888                  77


Q ss_pred             eeeeEEEe-eeEEEeecc
Q 046899          363 LLVCLTMV-KVLEIWRMI  379 (407)
Q Consensus       363 ~i~~~~~d-~~i~iwd~~  379 (407)
                      .|++++.+ +.|.+|++.
T Consensus       299 ~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          299 FVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEcCCCcEEEEEEe
Confidence            77776654 799999664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=9.2e-19  Score=159.86  Aligned_cols=276  Identities=10%  Similarity=0.033  Sum_probs=166.0

Q ss_pred             eeEEEeeCCCceEEEEEeCCCCeEEEEeeCC----CcEEEEeCcCCC-CcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           75 KKFKTIIHPGEVNRIRELPQNSKIVATHTDS----PDVLIWDVEAQP-NRHAVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        75 ~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~d----g~i~vwd~~~~~-~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      ...... |...+..++|+| ++++|++++.+    +.|.+|++.... ....+......    .....-.          
T Consensus        42 ~~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~----~~~p~~~----------  105 (361)
T 3scy_A           42 LPLSDA-EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM----GADPCYL----------  105 (361)
T ss_dssp             EEEEEE-ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS----SSCEEEE----------
T ss_pred             EEeecc-cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC----CCCcEEE----------
Confidence            333444 788889999999 88888888875    799999987631 11111000000    0000000          


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeE---e-----------ecccCEEEEEECCCCCcEEEEEeC
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY---L-----------GHEDTVEDVQFCPSSAQEFCSVGD  215 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~---~-----------~~~~~v~~l~~~~~~~~~l~s~~~  215 (407)
                              ...+.  ..+++...++.+.+|++.....+...   .           .+...+.+++|+|++..+++++..
T Consensus       106 --------~~dg~--~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A          106 --------TTNGK--NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             --------EECSS--EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             --------EECCC--EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence                    00000  01122224455666655432222111   0           122346889999999445555556


Q ss_pred             CCcEEEEEcCCCCC----C-c------eeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCc--e
Q 046899          216 DSCLILWDARSGST----P-A------VKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSP--I  281 (407)
Q Consensus       216 dg~i~iwd~~~~~~----~-~------~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~--~  281 (407)
                      ++.|.+|++.....    . .      ..........+..++|+| +++++++++ .++.|.+||+..      +..  +
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~------g~~~~~  248 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYAD------GMLDEI  248 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEET------TEEEEE
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecC------CceEEe
Confidence            89999999876541    1 1      122233455678999999 888777766 689999999985      432  3


Q ss_pred             eee---cCCCCCEEEEEEcCCCCCEEEEeeC-CCeEEEEeCC--CCC--cccccccCCCcccCCCCcCcchhccccceee
Q 046899          282 HKF---EGHSAAVLCVQWSPDKSSVFGSSAE-DGILNIWDHE--KIG--EKQDYGELKYPIIHPAYSSDMLDIETKLLTS  353 (407)
Q Consensus       282 ~~~---~~h~~~v~~v~~~~~~~~ll~s~~~-d~~i~vwd~~--~~~--~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  353 (407)
                      ..+   ..+......++|+|+|++|+++... ++.|.+|++.  +++  .+..+.. ...+.+++|+||           
T Consensus       249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spd-----------  316 (361)
T 3scy_A          249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPN-----------  316 (361)
T ss_dssp             EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTT-----------
T ss_pred             EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCC-----------
Confidence            333   2344567899999999988766666 6899999996  222  3333433 445667888888           


Q ss_pred             eeEeeCccceeeeEE-EeeeEEEeeccccccCChHHHHHHH-hhcccceeEeecc
Q 046899          354 IGMHLIHGRLLVCLT-MVKVLEIWRMIDLIYRPEEEVLAEL-DKFKSHIFGCDKS  406 (407)
Q Consensus       354 ~~~~~~~~~~i~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s  406 (407)
                             +.+|++++ .++.|.+|++...    ++++.... ..+...+.||+|+
T Consensus       317 -------g~~l~~~~~~~~~v~v~~~d~~----~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          317 -------GKYLLVACRDTNVIQIFERDQA----TGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             -------SCEEEEEETTTTEEEEEEECTT----TCCEEECSCCEECSSEEEEEEE
T ss_pred             -------CCEEEEEECCCCCEEEEEEECC----CCcEeecceeeeCCCCeEEEEc
Confidence                   77777776 5679999766410    23332222 2355678899886

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=3.6e-19  Score=160.50  Aligned_cols=265  Identities=12%  Similarity=0.052  Sum_probs=171.8

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCC---ceEEEEEeCCCC-eEEEEeeCCCcEEEEeCcCCCCccccc
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPG---EVNRIRELPQNS-KIVATHTDSPDVLIWDVEAQPNRHAVL  123 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~-~~l~tg~~dg~i~vwd~~~~~~~~~~~  123 (407)
                      ++++..++.+.+|-         ....+....+.+..   .+..++|+| ++ .+++++..++.|.+||+.+++....+.
T Consensus         4 ~v~~~~~~~v~~~d---------~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~   73 (337)
T 1pby_B            4 ILAPARPDKLVVID---------TEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             EEEEETTTEEEEEE---------TTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             EEEcCCCCeEEEEE---------CCCCcEEEEEEcCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence            45667788888881         11122334444444   589999999 55 556777778999999998876544332


Q ss_pred             CcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc------------CCCCCCCCCCCCcCceeeEe
Q 046899          124 GAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS------------GGNGDKPLESPSIGARGKYL  191 (407)
Q Consensus       124 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~i~d~~~~~~~~~~~  191 (407)
                      .....                  .....+....+.+.|.   .++++.            .++.+.+||..+++.+..+.
T Consensus        74 ~~~~~------------------~~~~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  132 (337)
T 1pby_B           74 LSTPE------------------ERVKSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             CCBTT------------------EEEECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             cCCcc------------------cccccccceEECCCCC---EEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence            11100                  0000011111222221   122222            46889999998888777665


Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC--------
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN--------  262 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg--------  262 (407)
                      . ...+.+++|+|++ ++++++  ++.|.+||+.+++  ....+..+.. ...+.|+| ++..++..+. ++        
T Consensus       133 ~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          133 A-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGT--LVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             C-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTE--EEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEEEE
T ss_pred             C-CCCcceeEECCCC-CEEEEe--CCeEEEEECCCCc--Eeeeeecccc-CCCceeCC-CccEEeeeccCCCceeeeeec
Confidence            4 4567889999999 656666  6899999999877  3444333320 11237888 6665544433 22        


Q ss_pred             ---------------cEEEEeCCCCCCCCCCCce-eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899          263 ---------------SIHMFDRRKLTSDGVGSPI-HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD  326 (407)
Q Consensus       263 ---------------~i~vwd~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  326 (407)
                                     .|.+||+++      ++.. ..+..+...+.+++|+|++++++ ++  ++.|.+||+.+++.+..
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~d~~~~~~~~~  275 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLET------GEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEKNASIKR  275 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTT------CCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTTTEEEEE
T ss_pred             cccccccccccccccceEEEeCCC------CCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEEECCCCcCcce
Confidence                           468999988      5543 33445667889999999999775 44  79999999998777666


Q ss_pred             cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          327 YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       327 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +... ..+.+++|+||                  +..+++++.++.|++||+.
T Consensus       276 ~~~~-~~~~~~~~s~d------------------g~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          276 VPLP-HSYYSVNVSTD------------------GSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EECS-SCCCEEEECTT------------------SCEEEEESBSSEEEEEETT
T ss_pred             ecCC-CceeeEEECCC------------------CCEEEEEcCCCcEEEEECc
Confidence            5533 34567778777                  7777777888999999997

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.79  E-value=6.3e-18  Score=153.47  Aligned_cols=238  Identities=10%  Similarity=0.084  Sum_probs=164.1

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      ....+.....+..++|+|+...+++++..++.|.+||..+++....+..+....+.......              +...
T Consensus        81 ~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  146 (353)
T 3vgz_A           81 VTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQ--------------PREL  146 (353)
T ss_dssp             EEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCE--------------EEEE
T ss_pred             EEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCC--------------CceE
Confidence            34444556678899999944446667777899999999987765544332211100000000              0011


Q ss_pred             cccccCCCCCccccc-cCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          156 KSTASGGANSKNASK-SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                      .+.+.+..  .+++. ..++.+.+||..+++.+..+..+...+.+++|+|++ ..+++++.++.|.+||+.+++  ....
T Consensus       147 ~~s~dg~~--l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~--~~~~  221 (353)
T 3vgz_A          147 VADDATNT--VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNK--ILSR  221 (353)
T ss_dssp             EEETTTTE--EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTE--EEEE
T ss_pred             EECCCCCE--EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCe--EEEE
Confidence            11112211  11222 346779999999988888876566678899999999 778888889999999999877  3433


Q ss_pred             ecc----cCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          235 EKA----HNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       235 ~~~----~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                      ...    +...+.+++|+| +++++++++. ++.|.+||+.+      ++.+..+.....  ..++|+|++++++++...
T Consensus       222 ~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~  292 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRN------GNILAKVAAPES--LAVLFNPARNEAYVTHRQ  292 (353)
T ss_dssp             EECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTT------CCEEEEEECSSC--CCEEEETTTTEEEEEETT
T ss_pred             EEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcCCC--ceEEECCCCCEEEEEECC
Confidence            332    455678899999 7776666554 59999999988      788877775432  679999999988877778


Q ss_pred             CCeEEEEeCCCCCcccccccCCCcccCCCCcCc
Q 046899          310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD  342 (407)
Q Consensus       310 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  342 (407)
                      ++.|.+||+.+++.+..+.... .+.+++|++|
T Consensus       293 ~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~d  324 (353)
T 3vgz_A          293 AGKVSVIDAKSYKVVKTFDTPT-HPNSLALSAD  324 (353)
T ss_dssp             TTEEEEEETTTTEEEEEEECCS-EEEEEEECTT
T ss_pred             CCeEEEEECCCCeEEEEEecCC-CCCeEEEcCC
Confidence            9999999999987776665433 4567788877

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=5.5e-19  Score=171.90  Aligned_cols=255  Identities=10%  Similarity=-0.002  Sum_probs=168.8

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeC-CCcEEEEeCcCCCCcccccCcC------CCCCCC----------CCcEEEEeccc-
Q 046899           82 HPGEVNRIRELPQNSKIVATHTD-SPDVLIWDVEAQPNRHAVLGAA------DSHPDL----------DQSVVLWSIQD-  143 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~------~~~~~~----------d~~i~~w~~~~-  143 (407)
                      +..+|++++|+| +|+.||+++. ||+++||++.++........+.      ...++.          +....+|.+.. 
T Consensus        20 ~~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           20 IAVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HHSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETT
T ss_pred             hccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEecc
Confidence            356799999999 8888998877 9999999987654333222221      111110          22334443322 


Q ss_pred             ---cccccccCCCC--CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC--
Q 046899          144 ---HVSALAAEPGS--AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD--  216 (407)
Q Consensus       144 ---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d--  216 (407)
                         ....+......  ..+.+.+.  ...++...++...+||+.+++.......+ .  .+++|+|+| +.+++++.+  
T Consensus        99 ~~g~~~~l~~~~~~~~~~~s~dg~--~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG-~~la~~~~~~~  172 (582)
T 3o4h_A           99 RPGEEQRLEAVKPMRILSGVDTGE--AVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRG-DLIAGLGFFGG  172 (582)
T ss_dssp             STTCCEECTTSCSBEEEEEEECSS--CEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEET-TEEEEEEEEET
T ss_pred             CCCccccccCCCCceeeeeCCCCC--eEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCC-CEEEEEEEcCC
Confidence               11111111110  11222221  12233334445559998887665544433 3  789999999 788877776  


Q ss_pred             --CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCCceeeecCCCCCEE
Q 046899          217 --SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--SIHMFDRRKLTSDGVGSPIHKFEGHSAAVL  292 (407)
Q Consensus       217 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~  292 (407)
                        +.|++||+.+++   ...+..|...+..++|+| |++.|+++..++  .|++||+.+      ++.. .+..|...+.
T Consensus       173 ~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~------~~~~-~~~~~~~~~~  241 (582)
T 3o4h_A          173 GRVSLFTSNLSSGG---LRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD------GSVE-DLELPSKDFS  241 (582)
T ss_dssp             TEEEEEEEETTTCC---CEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT------CCEE-ECCCSCSHHH
T ss_pred             CCeEEEEEcCCCCC---ceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC------CcEE-EccCCCcChh
Confidence              789999998877   345678888899999999 999999888888  899999987      6666 7777877777


Q ss_pred             EEE--------EcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcccee
Q 046899          293 CVQ--------WSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL  364 (407)
Q Consensus       293 ~v~--------~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i  364 (407)
                      .++        |+|+| .++++++.|+++++|++  ++....   ....+.+++|+ |                  +..+
T Consensus       242 ~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-d------------------g~~l  296 (582)
T 3o4h_A          242 SYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-R------------------GKLV  296 (582)
T ss_dssp             HHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-T------------------TEEE
T ss_pred             hhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-C------------------CEEE
Confidence            777        99999 57789999999999999  443331   22344444554 4                  6666


Q ss_pred             eeEEEee---eEEEeecc
Q 046899          365 VCLTMVK---VLEIWRMI  379 (407)
Q Consensus       365 ~~~~~d~---~i~iwd~~  379 (407)
                      ++++.+.   .|.+||..
T Consensus       297 ~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          297 TSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEETTEEEEEEEETTC
T ss_pred             EEEcCCCCCCeEEEEcCC
Confidence            7666664   57777754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.78  E-value=3.9e-18  Score=169.78  Aligned_cols=263  Identities=11%  Similarity=0.051  Sum_probs=175.1

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCc-----CCCCCCC-------CCcEEEEeccc-----ccc
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGA-----ADSHPDL-------DQSVVLWSIQD-----HVS  146 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~-------d~~i~~w~~~~-----~~~  146 (407)
                      ..|.+++|+| ++.++++.  ++.|++||+.+++........     ....++.       ++.|.+|++.+     +..
T Consensus        82 ~~v~~~~~sp-d~~~~~~~--~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAG-RGLVVLFT--QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETT-TTEEEEEE--TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECC-CCeEEEEE--CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCc
Confidence            5799999999 56555553  489999999877543322111     1122222       78899999987     432


Q ss_pred             cc-cc-CC-----------------CCCcccccCCCCCcccccc---------------------------------CCC
Q 046899          147 AL-AA-EP-----------------GSAKSTASGGANSKNASKS---------------------------------GGN  174 (407)
Q Consensus       147 ~~-~~-~~-----------------~~~~~~~~~~~~~~~~~~~---------------------------------~~~  174 (407)
                      .. .. ..                 ....+.++|   ..+++++                                 .+.
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg---~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG---SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS---SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCC---CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence            11 11 11                 122233333   3344443                                 345


Q ss_pred             CCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCC-----cEEEEEcCCCCCCceeee-cccCc---ceE
Q 046899          175 GDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDS-----CLILWDARSGSTPAVKVE-KAHNA---DIH  243 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~~---~v~  243 (407)
                      .+.+||+.+++......  .|...+.+++|+|++ +.|++++.++     .|.+||+.+++. ..... ..+..   .+.
T Consensus       236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCCCCS
T ss_pred             EEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeECccC
Confidence            68889998877544432  466789999999999 7777777665     899999998831 12221 12222   246


Q ss_pred             EEEecC-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEE-EEEcCCCCCEEEEeeCCC----eEEEEe
Q 046899          244 CVDWNP-HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG----ILNIWD  317 (407)
Q Consensus       244 ~l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~ll~s~~~d~----~i~vwd  317 (407)
                      ++.|+| .+++++++++.||.+++|++...     +..+..+..|...+.+ ++|+|+++.|+++++.++    .|..||
T Consensus       314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-----~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-----GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             CCEECTTCSSEEEEEECTTSSCEEEEEETT-----SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             CceeecCCCCEEEEEEccCCccEEEEEECC-----CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence            789998 24578999999999999988621     5677888888888887 799999998876777665    777778


Q ss_pred             CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe----eeEEEeecc
Q 046899          318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV----KVLEIWRMI  379 (407)
Q Consensus       318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d----~~i~iwd~~  379 (407)
                      +.+++ ...+. +...+..++||||                  +..|+..+.+    +.|++||+.
T Consensus       389 ~~~~~-~~~l~-~~~~~~~~~~spd------------------g~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          389 IKGGK-TKDLT-PESGMHRTQLSPD------------------GSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             TTCCC-CEESC-CSSSEEEEEECTT------------------SSEEEEEEECSSCSCEEEEEESS
T ss_pred             cCCCC-ceecc-CCCceEEEEECCC------------------CCEEEEEecCCCCCcEEEEEECC
Confidence            77654 33333 4555777888888                  6666655444    369999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.77  E-value=1.3e-17  Score=172.86  Aligned_cols=262  Identities=11%  Similarity=0.013  Sum_probs=188.3

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC-CCCcccccCcCCC-----CCCC-------CCcEEEEecccc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA-QPNRHAVLGAADS-----HPDL-------DQSVVLWSIQDH  144 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~-~~~~~~~~~~~~~-----~~~~-------d~~i~~w~~~~~  144 (407)
                      .+.+|.+.+.++.|++ + .++++++.|+.++||.+.. +.....+..+...     .++.       ++.+.+|++...
T Consensus       198 ~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~  275 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTE  275 (1045)
T ss_dssp             EEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTC
T ss_pred             ECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCce
Confidence            3467999999999998 5 7888888999999998764 2223333222211     1111       677888887433


Q ss_pred             ccc-cccC--------------CCCCccc-ccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc-CEEEEEECCCCC
Q 046899          145 VSA-LAAE--------------PGSAKST-ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED-TVEDVQFCPSSA  207 (407)
Q Consensus       145 ~~~-~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~v~~l~~~~~~~  207 (407)
                      ... +...              .....+. +.|   ..+++++ ++.+.+|+...++.. .+..|.. .+..++|+ ++ 
T Consensus       276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg-  348 (1045)
T 1k32_A          276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TK-  348 (1045)
T ss_dssp             CEEECCCCCCCBCCSEEEECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SE-
T ss_pred             EeeeeccCcccccccccccccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CC-
Confidence            211 1110              1112223 333   2344444 778888988776644 3556666 89999999 88 


Q ss_pred             cEEEEEeCCCcEE-EEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC
Q 046899          208 QEFCSVGDDSCLI-LWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG  286 (407)
Q Consensus       208 ~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  286 (407)
                      ..|+.++.++.+. +||+..+.   ...+..|...+..++|+| ++++|++++.++.|++||+.+      ++....+..
T Consensus       349 ~~l~~~s~~~~l~~~~d~~~~~---~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~t------g~~~~~~~~  418 (1045)
T 1k32_A          349 VAFIHGTREGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLET------GKPTVIERS  418 (1045)
T ss_dssp             EEEEEEETTEEEEEEEETTTCC---EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTT------CCEEEEEEC
T ss_pred             CeEEEEECCCceEEEEECCCCC---ceEecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCC------CceEEeccC
Confidence            7888888888888 99998766   333447788899999999 999999999999999999998      777777778


Q ss_pred             CCCCEEEEEEcCCCCCEEEEeeCC----------CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeE
Q 046899          287 HSAAVLCVQWSPDKSSVFGSSAED----------GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGM  356 (407)
Q Consensus       287 h~~~v~~v~~~~~~~~ll~s~~~d----------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~  356 (407)
                      |...+.+++|+|+|++|+ +++.+          +.|++||+.+++ ...+..+...+..++|+||              
T Consensus       419 ~~~~v~~~~~SpDG~~la-~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spd--------------  482 (1045)
T 1k32_A          419 REAMITDFTISDNSRFIA-YGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDAD--------------  482 (1045)
T ss_dssp             SSSCCCCEEECTTSCEEE-EEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTT--------------
T ss_pred             CCCCccceEECCCCCeEE-EEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCC--------------
Confidence            999999999999999774 55544          499999999865 6666677777777889888              


Q ss_pred             eeCccceeeeEEEeeeEEEeec
Q 046899          357 HLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       357 ~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                          +..|+..+.++..++|+.
T Consensus       483 ----G~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          483 ----SKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             ----SCEEEEEESCCCCCEECS
T ss_pred             ----CCEEEEEecccCCcCcch
Confidence                777777777666666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=5.3e-19  Score=160.27  Aligned_cols=232  Identities=10%  Similarity=0.044  Sum_probs=155.8

Q ss_pred             EEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccc
Q 046899           89 IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNA  168 (407)
Q Consensus        89 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (407)
                      +++.+ ++.++++++.+++|.+||..+++....+......               .       +....+.+.+.  ..++
T Consensus         5 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------------~-------~~~~~~s~dg~--~~~v   59 (349)
T 1jmx_B            5 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF---------------G-------PGTAMMAPDNR--TAYV   59 (349)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC---------------S-------SCEEEECTTSS--EEEE
T ss_pred             ccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCC---------------C-------CceeEECCCCC--EEEE
Confidence            34555 7889999999999999999877554443222100               0       11111112221  1233


Q ss_pred             cccCCCCCCCCCCCCcCceeeEeec------ccCEEEEEECCCCCcEEEEEeCC------------CcEEEEEcCCCCCC
Q 046899          169 SKSGGNGDKPLESPSIGARGKYLGH------EDTVEDVQFCPSSAQEFCSVGDD------------SCLILWDARSGSTP  230 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~  230 (407)
                      +...++.+.+||..+++.+..+..+      ...+.+++|+|++ +++++++.+            +.|.+||+.+++..
T Consensus        60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence            4456788999999888877666532      2337889999999 677777754            89999999875411


Q ss_pred             -ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC---------------------
Q 046899          231 -AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS---------------------  288 (407)
Q Consensus       231 -~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~---------------------  288 (407)
                       ..... .+...+.+++|+| +++ +++++.  .|.+||+.+      ++.+..+..+.                     
T Consensus       139 ~~~~~~-~~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (349)
T 1jmx_B          139 KPVRTF-PMPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKT------GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR  207 (349)
T ss_dssp             CCSEEE-ECCSSCCCEEECT-TSC-EEEESS--SEEEECTTT------CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTT
T ss_pred             ceeeec-cCCCcccceeECC-CCc-EEEccC--cEEEEeCCC------CceeccccccccCCccccCccceeeecCCCcc
Confidence             12222 3444688999999 788 555443  499999987      55554443221                     


Q ss_pred             -----------------------------------------------CCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCC
Q 046899          289 -----------------------------------------------AAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       289 -----------------------------------------------~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                                                                     ..+.+++|+| ++++++ ++  ++.|.+||+.+
T Consensus       208 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~-~~--~~~v~~~d~~~  284 (349)
T 1jmx_B          208 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GV--LNRLAKYDLKQ  284 (349)
T ss_dssp             CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE-EE--ESEEEEEETTT
T ss_pred             eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE-EE--cCeEEEEECcc
Confidence                                                           1456778889 999765 44  88999999998


Q ss_pred             CCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          321 IGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       321 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      ++....+... ..+.+++|++|                  +..|++++.++.|++||..
T Consensus       285 ~~~~~~~~~~-~~~~~~~~s~d------------------g~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          285 RKLIKAANLD-HTYYCVAFDKK------------------GDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             TEEEEEEECS-SCCCEEEECSS------------------SSCEEEESBSSEEEEEETT
T ss_pred             CeEEEEEcCC-CCccceEECCC------------------CCEEEEecCCCeEEEEecc
Confidence            7766665532 34567778777                  7777777778999999997

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.77  E-value=9.7e-19  Score=174.58  Aligned_cols=221  Identities=11%  Similarity=0.104  Sum_probs=147.9

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      ..+.+++|+| +++++++ +.||+|++||+.+++....+..+.....             ....+..+++       |  
T Consensus        17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~-------------~v~~~~~SpD-------g--   72 (723)
T 1xfd_A           17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESL-------------RAIRYEISPD-------R--   72 (723)
T ss_dssp             CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTT-------------TCSEEEECTT-------S--
T ss_pred             ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEecccccccc-------------ccceEEECCC-------C--
Confidence            3467889999 7887766 7899999999998876655544322100             0011112222       1  


Q ss_pred             CCccccccC---------CCCCCCCCCCCcCceeeEe---ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899          164 NSKNASKSG---------GNGDKPLESPSIGARGKYL---GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA  231 (407)
Q Consensus       164 ~~~~~~~~~---------~~~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  231 (407)
                       ..+++++.         ++.+.+||+.+++. ..+.   +|...+..++|+|+| +.|+.++. +.|++||+.+++  .
T Consensus        73 -~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~--~  146 (723)
T 1xfd_A           73 -EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQ--A  146 (723)
T ss_dssp             -SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSC--C
T ss_pred             -CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCc--e
Confidence             12333322         35666999888775 2232   344558899999999 77888775 799999999877  3


Q ss_pred             eeeecccCcc------------------eEEEEecCCCCCEEEEEeCCC-------------------------------
Q 046899          232 VKVEKAHNAD------------------IHCVDWNPHDVNLILTGSADN-------------------------------  262 (407)
Q Consensus       232 ~~~~~~~~~~------------------v~~l~~~~~~~~~l~tg~~dg-------------------------------  262 (407)
                      ......+...                  +.+++|+| |++.|++++.|+                               
T Consensus       147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  225 (723)
T 1xfd_A          147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (723)
T ss_dssp             EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             EEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence            3333333332                  37899999 999999887553                               


Q ss_pred             ---cEEEEeCCCCCCCCCCCceeeecCC------CCCEEEEEEcCCCCCEEEEee----CCCeEEEEeCCCCCccccccc
Q 046899          263 ---SIHMFDRRKLTSDGVGSPIHKFEGH------SAAVLCVQWSPDKSSVFGSSA----EDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       263 ---~i~vwd~~~~~~~~~~~~~~~~~~h------~~~v~~v~~~~~~~~ll~s~~----~d~~i~vwd~~~~~~~~~~~~  329 (407)
                         .|++||+.+      ++....+..+      ...+.+++|+|||+.+ ++.+    .+..|++||+.+++....+..
T Consensus       226 ~~~~l~~~d~~~------~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  298 (723)
T 1xfd_A          226 PSISLHVIGLNG------PTHDLEMMPPDDPRMREYYITMVKWATSTKVA-VTWLNRAQNVSILTLCDATTGVCTKKHED  298 (723)
T ss_dssp             CEEEEEEEESSS------SCCCEECCCCCCGGGSSEEEEEEEESSSSEEE-EEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             CeeEEEEEECCC------CceeEEeeCCccCCCccceeEEEEEeCCCeEE-EEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence               799999987      5655666554      5679999999999965 3443    236899999998776554433


Q ss_pred             -CCCcc----cCCCCcCc
Q 046899          330 -LKYPI----IHPAYSSD  342 (407)
Q Consensus       330 -~~~~v----~~~~~s~d  342 (407)
                       +...+    ..++||||
T Consensus       299 ~~~~~~~~~~~~~~~spd  316 (723)
T 1xfd_A          299 ESEAWLHRQNEEPVFSKD  316 (723)
T ss_dssp             ECSSCCCCCCCCCEECTT
T ss_pred             ccCCEEeccCCCceEcCC
Confidence             23333    37889888

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.76  E-value=7.8e-19  Score=174.80  Aligned_cols=278  Identities=10%  Similarity=0.113  Sum_probs=176.7

Q ss_pred             eEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCc-ccccCcC-----------------------CCCCCC------CCc
Q 046899           86 VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNR-HAVLGAA-----------------------DSHPDL------DQS  135 (407)
Q Consensus        86 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~-~~~~~~~-----------------------~~~~~~------d~~  135 (407)
                      ++.+.|.   ++.+++++.|+ | +||+.+++.. ..+..+.                       ...++.      ++.
T Consensus        28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~  102 (706)
T 2z3z_A           28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGG  102 (706)
T ss_dssp             CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTE
T ss_pred             CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCE
Confidence            5557777   34566667777 8 9999988762 2221111                       011111      789


Q ss_pred             EEEEeccccccc-cccCCC---CCcccccCCCCCccccccCCCCCCCCCCCC-----cCceeeEeecccC----------
Q 046899          136 VVLWSIQDHVSA-LAAEPG---SAKSTASGGANSKNASKSGGNGDKPLESPS-----IGARGKYLGHEDT----------  196 (407)
Q Consensus       136 i~~w~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~~----------  196 (407)
                      +.+||+.++... +.....   ...+.+.|   ..+++ ..++.+.+|++.+     ++.......+...          
T Consensus       103 i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG---~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e  178 (706)
T 2z3z_A          103 LVGFDMLARKVTYLFDTNEETASLDFSPVG---DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR  178 (706)
T ss_dssp             EEEEETTTTEEEEEECCTTCCTTCEECTTS---SEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred             EEEEECCCCceEEccCCcccccCCcCCCCC---CEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence            999999876432 222222   23344444   33555 4678999999988     7766554444433          


Q ss_pred             ----EEEEEECCCCCcEEEEEe---------------------------------CCCcEEEEEcCCCCCCceeeecccC
Q 046899          197 ----VEDVQFCPSSAQEFCSVG---------------------------------DDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       197 ----v~~l~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                          +.+++|+|+| +.|++++                                 .+..|.+||+.+++.........|.
T Consensus       179 e~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  257 (706)
T 2z3z_A          179 EFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE  257 (706)
T ss_dssp             CTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred             hcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence                4889999999 7788776                                 4578999999887621111112566


Q ss_pred             cceEEEEecCCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCCceeeec--CCC---CCEEEEEEcC--CCCCEEEEe
Q 046899          240 ADIHCVDWNPHDVNLILTGSADN-----SIHMFDRRKLTSDGVGSPIHKFE--GHS---AAVLCVQWSP--DKSSVFGSS  307 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~--~h~---~~v~~v~~~~--~~~~ll~s~  307 (407)
                      ..+.+++|+| +++.|++++.++     .|++||+.+      ++....+.  .+.   ..+.+++|+|  +|++ ++++
T Consensus       258 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~~~  329 (706)
T 2z3z_A          258 KFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAET------GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IWQS  329 (706)
T ss_dssp             CEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTT------CCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EEEE
T ss_pred             eeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCC------CceeeEEEEccCCCeECccCCceeecCCCCEE-EEEE
Confidence            7899999999 999998887775     899999988      53333332  122   2346789999  9985 4688


Q ss_pred             eCCCeEEEEeCC-CCCcccccccCCCcccC-CCCcCcchhccccceeeeeEeeCccceeeeEEE-ee----eEEEeeccc
Q 046899          308 AEDGILNIWDHE-KIGEKQDYGELKYPIIH-PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTM-VK----VLEIWRMID  380 (407)
Q Consensus       308 ~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~-~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~----~i~iwd~~~  380 (407)
                      +.|+.++||++. .++.+..+..+...+.. ++|+||                  +..|+..+. ++    .|..||+. 
T Consensus       330 ~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spd------------------g~~l~~~~~~~~~~~~~l~~~d~~-  390 (706)
T 2z3z_A          330 RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPK------------------GTRLYFESTEASPLERHFYCIDIK-  390 (706)
T ss_dssp             CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTT------------------SSEEEEEESSSCTTCBEEEEEETT-
T ss_pred             ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCC------------------CCEEEEEecCCCCceEEEEEEEcC-
Confidence            889999999886 55666667666666665 678887                  666654444 33    55566654 


Q ss_pred             cccCChHHHHHHHhhcccceeEeeccC
Q 046899          381 LIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       381 ~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                           +++ +..+ .|...+.+++||+
T Consensus       391 -----~~~-~~~l-~~~~~~~~~~~sp  410 (706)
T 2z3z_A          391 -----GGK-TKDL-TPESGMHRTQLSP  410 (706)
T ss_dssp             -----CCC-CEES-CCSSSEEEEEECT
T ss_pred             -----CCC-ceec-cCCCceEEEEECC
Confidence                 222 1222 2666788888885

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.74  E-value=1.8e-16  Score=143.08  Aligned_cols=245  Identities=11%  Similarity=0.063  Sum_probs=147.1

Q ss_pred             CeeEEEEeec---ccccCcc-ceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEe-eCCCcEEEEe
Q 046899           38 PSLSCRWGPQ---LEQATYK-NRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATH-TDSPDVLIWD  112 (407)
Q Consensus        38 p~~s~~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd  112 (407)
                      +...+.|.|+   ++.+..+ +.+++|.   .+.+  .............+.+..++|+| ++++|+++ ..++.|.+||
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEFRVLAYR---IAPD--DGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEE---ECTT--TCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred             CCceEEECCCCCEEEEeecCCCeEEEEE---ecCC--CCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEE
Confidence            4445777764   4454444 7788882   2211  11223333344445899999999 66656554 4588999999


Q ss_pred             CcCC---CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccc-cCCCCCCCCCCCC-cCce
Q 046899          113 VEAQ---PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASK-SGGNGDKPLESPS-IGAR  187 (407)
Q Consensus       113 ~~~~---~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~d~~~-~~~~  187 (407)
                      +..+   .....+..+                 .       .+....+.+.+.   .++++ ..++.+.+||+.. ++..
T Consensus       113 ~~~~~~~~~~~~~~~~-----------------~-------~~~~~~~s~dg~---~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGL-----------------D-------GCHSANISPDNR---TLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             EETTEEEEEEEEECCC-----------------T-------TBCCCEECTTSS---EEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             CCCCccccccccccCC-----------------C-------CceEEEECCCCC---EEEEecCCCCEEEEEEecCCCcee
Confidence            9522   111111110                 0       011122222222   23333 3678888998876 4432


Q ss_pred             e----eEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCCCceeeec----cc--CcceEEEEecCCCCCE
Q 046899          188 G----KYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GSTPAVKVEK----AH--NADIHCVDWNPHDVNL  254 (407)
Q Consensus       188 ~----~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~----~~--~~~v~~l~~~~~~~~~  254 (407)
                      .    .... ....+.+++|+|++..+++++..++.|.+||++.  +.........    .+  ...+.+++|+| ++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~  244 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRH  244 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSE
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCE
Confidence            2    2222 3457889999999944555666899999999964  3311111211    11  23566899999 7776


Q ss_pred             EE-EEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          255 IL-TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       255 l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      |+ ++..++.|.+||+....  +..+.+..+..+.. +.+++|+|++++|++++..++.|.+|++.
T Consensus       245 l~v~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDG--SVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTS--CCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCC--CceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            66 55578999999998311  00345555655544 88999999999887666578999999544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.74  E-value=6.7e-16  Score=141.09  Aligned_cols=257  Identities=12%  Similarity=0.007  Sum_probs=155.6

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc-CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc-ccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE-AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK-STA  159 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~  159 (407)
                      ....+..++|+| ++++|++++.+ .|.+|++. +++...... +.              .......+..++++.. ++.
T Consensus        38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-~~--------------~~g~~~~~~~spdg~~l~~~  100 (365)
T 1jof_A           38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-HP--------------IGGHPRANDADTNTRAIFLL  100 (365)
T ss_dssp             TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEE-EE--------------CCSSGGGGCTTSCCEEEEEE
T ss_pred             CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeE-ee--------------cCCCCccEEECCCCCEEEEE
Confidence            445788999999 88888888887 99999997 443221110 00              0000011111221110 000


Q ss_pred             cCCCCCcccccc----CCCCCCCCCCC-CcCceeeEe----ecccCEEEEEECCCCCcEEEEEe-CCCcEEEEEcC-CCC
Q 046899          160 SGGANSKNASKS----GGNGDKPLESP-SIGARGKYL----GHEDTVEDVQFCPSSAQEFCSVG-DDSCLILWDAR-SGS  228 (407)
Q Consensus       160 ~~~~~~~~~~~~----~~~~i~i~d~~-~~~~~~~~~----~~~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~  228 (407)
                      ..........+.    .++.+.+|++. .++....+.    .+...+.+++|+|+| ++++++. .++.|++||+. +++
T Consensus       101 ~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~  179 (365)
T 1jof_A          101 AAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGE  179 (365)
T ss_dssp             ECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSC
T ss_pred             EecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCC
Confidence            000000000011    56778888876 355443333    245679999999999 5666554 46899999998 665


Q ss_pred             CCceeeec--ccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCce------eeec----CCCC------
Q 046899          229 TPAVKVEK--AHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPI------HKFE----GHSA------  289 (407)
Q Consensus       229 ~~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~------~~~~----~h~~------  289 (407)
                      ........  .+...+..++|+| +++++++++. ++.|.+|++....    ++..      ..+.    +|..      
T Consensus       180 ~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~~~~~~~~~g~~~~~~~~~  254 (365)
T 1jof_A          180 VELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPAT----HMPVYTHHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTT----CCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred             EEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCC----CcEEEccceEEcCCCCcCCccccccccc
Confidence            21122222  2456789999999 8888877765 6899999875311    3332      1222    1222      


Q ss_pred             CEEEEE-EcCCCCCEEEEeeCCC-----eEEEEeCC-CCCccc---ccccCCCcccCCCCcC---cchhccccceeeeeE
Q 046899          290 AVLCVQ-WSPDKSSVFGSSAEDG-----ILNIWDHE-KIGEKQ---DYGELKYPIIHPAYSS---DMLDIETKLLTSIGM  356 (407)
Q Consensus       290 ~v~~v~-~~~~~~~ll~s~~~d~-----~i~vwd~~-~~~~~~---~~~~~~~~v~~~~~s~---d~~~~~~~~~~~~~~  356 (407)
                      .+..++ |+|+|++|+++...++     +|.+|++. +++...   ....+...+..++|+|   |              
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d--------------  320 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS--------------  320 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC--------------
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC--------------
Confidence            588999 9999998865554343     89999996 433222   1223444567888888   5              


Q ss_pred             eeCccceeeeEEEe-eeEEEeecc
Q 046899          357 HLIHGRLLVCLTMV-KVLEIWRMI  379 (407)
Q Consensus       357 ~~~~~~~i~~~~~d-~~i~iwd~~  379 (407)
                          +.+|++++.+ ++|+||++.
T Consensus       321 ----g~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          321 ----DEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             ----TTEEEEECSSSCEEEEEEEE
T ss_pred             ----CCEEEEEEcCCCeEEEEEEc
Confidence                7778877764 799999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=3.3e-18  Score=170.64  Aligned_cols=300  Identities=13%  Similarity=0.083  Sum_probs=174.5

Q ss_pred             eEEEEeec--ccccCccceEEEEeecccCcccCCcceeeEEEeeCCC----ceEEEEEeCCCCeEEEEeeC---------
Q 046899           40 LSCRWGPQ--LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPG----EVNRIRELPQNSKIVATHTD---------  104 (407)
Q Consensus        40 ~s~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~l~tg~~---------  104 (407)
                      .+..|.|+  +...+.++.+++|-.         .......+..+..    .+.+++|+| +|++||+++.         
T Consensus        19 ~~~~~s~dg~~~~~~~d~~i~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~   88 (719)
T 1z68_A           19 FFPNWISGQEYLHQSADNNIVLYNI---------ETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSY   88 (719)
T ss_dssp             CCCEESSSSEEEEECTTSCEEEEES---------SSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCE
T ss_pred             CccEECCCCeEEEEcCCCCEEEEEc---------CCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeec
Confidence            35677775  333345778888821         1122333333332    399999999 8899988876         


Q ss_pred             CCcEEEEeCcCCCCc--ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC
Q 046899          105 SPDVLIWDVEAQPNR--HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP  182 (407)
Q Consensus       105 dg~i~vwd~~~~~~~--~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~  182 (407)
                      ++.|++||+.+++..  ..+..                   .       .....+.++|.   .++++ .++.+.+|+..
T Consensus        89 ~~~i~~~d~~~g~~~~~~~l~~-------------------~-------~~~~~~SPDG~---~la~~-~~~~i~~~~~~  138 (719)
T 1z68_A           89 TATYYIYDLSNGEFVRGNELPR-------------------P-------IQYLCWSPVGS---KLAYV-YQNNIYLKQRP  138 (719)
T ss_dssp             EEEEEEEETTTTEECCSSCCCS-------------------S-------BCCEEECSSTT---CEEEE-ETTEEEEESST
T ss_pred             ceEEEEEECCCCccccceecCc-------------------c-------cccceECCCCC---EEEEE-ECCeEEEEeCC
Confidence            689999999877542  11100                   0       01112222332   23333 35677778777


Q ss_pred             CcCceeeE-eecccCE-----------------EEEEECCCCCcEEEEEeCCC---------------------------
Q 046899          183 SIGARGKY-LGHEDTV-----------------EDVQFCPSSAQEFCSVGDDS---------------------------  217 (407)
Q Consensus       183 ~~~~~~~~-~~~~~~v-----------------~~l~~~~~~~~~l~s~~~dg---------------------------  217 (407)
                      +++..+.. .++...|                 .+++|+|+| +.|++++.|.                           
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~  217 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA  217 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence            66654332 1222222                 489999999 7788877542                           


Q ss_pred             -------cEEEEEcCCCCCC---ce---eeecccCcceEEEEecCCCCCEEEEEeCC----CcEEEEe----CCCCCCCC
Q 046899          218 -------CLILWDARSGSTP---AV---KVEKAHNADIHCVDWNPHDVNLILTGSAD----NSIHMFD----RRKLTSDG  276 (407)
Q Consensus       218 -------~i~iwd~~~~~~~---~~---~~~~~~~~~v~~l~~~~~~~~~l~tg~~d----g~i~vwd----~~~~~~~~  276 (407)
                             .|++||+.+++..   .+   ..+..|...+..++|+| |++++++....    ..|.+||    +.+     
T Consensus       218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----  291 (719)
T 1z68_A          218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT-----  291 (719)
T ss_dssp             TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS-----
T ss_pred             CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC-----
Confidence                   7889999876510   00   12345788899999999 78777774433    2488899    766     


Q ss_pred             CCCceeee----cCCCCCEE-----EEEEcCCCCCEEE-EeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcch
Q 046899          277 VGSPIHKF----EGHSAAVL-----CVQWSPDKSSVFG-SSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDML  344 (407)
Q Consensus       277 ~~~~~~~~----~~h~~~v~-----~v~~~~~~~~ll~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~  344 (407)
                       ++....+    ..|...+.     .++|+|+|+.++. ++..++  .|.+||+...+ ...+..+...+..+.++    
T Consensus       292 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~----  365 (719)
T 1z68_A          292 -WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV----  365 (719)
T ss_dssp             -EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE----
T ss_pred             -CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE----
Confidence             4544444    46777776     8899999997654 344555  57777876644 33333333323222222    


Q ss_pred             hccccceeeeeEeeCccceeeeEEEe-----eeEEEeeccccccCChHHHHH-HHhhcccceeEeeccC
Q 046899          345 DIETKLLTSIGMHLIHGRLLVCLTMV-----KVLEIWRMIDLIYRPEEEVLA-ELDKFKSHIFGCDKSC  407 (407)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~i~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~  407 (407)
                                     .+..|+..+.+     +.++||.+.........+++. .+.+|...+..++||+
T Consensus       366 ---------------d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~  419 (719)
T 1z68_A          366 ---------------TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD  419 (719)
T ss_dssp             ---------------CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred             ---------------eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence                           25556655554     688999886211000001111 1344666777777763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.68  E-value=4.1e-17  Score=162.72  Aligned_cols=215  Identities=10%  Similarity=0.110  Sum_probs=140.7

Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcc
Q 046899           88 RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKN  167 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (407)
                      .++|+| ++++++++ .|++|++||+.+++....+..+....             .....+..++       +|.   .+
T Consensus        20 ~~~~s~-dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~-------------~~~~~~~~Sp-------Dg~---~l   74 (719)
T 1z68_A           20 FPNWIS-GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKS-------------VNASNYGLSP-------DRQ---FV   74 (719)
T ss_dssp             CCEESS-SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHT-------------TTCSEEEECT-------TSS---EE
T ss_pred             ccEECC-CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccc-------------cceeeEEECC-------CCC---eE
Confidence            678999 77766655 58999999999887554433221100             0001111111       221   23


Q ss_pred             ccccC---------CCCCCCCCCCCcCce--eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee-e
Q 046899          168 ASKSG---------GNGDKPLESPSIGAR--GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-E  235 (407)
Q Consensus       168 ~~~~~---------~~~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~  235 (407)
                      ++++.         ++.+.+||+.+++.+  ..+   ...+..++|+|+| +.|+.+. ++.|++||+.++..  ... .
T Consensus        75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~--~~l~~  147 (719)
T 1z68_A           75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPP--FQITF  147 (719)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCC--EECCC
T ss_pred             EEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCc--EEEec
Confidence            33322         578889998877652  222   2468899999999 6777775 78999999988762  221 1


Q ss_pred             cccCcce-----------------EEEEecCCCCCEEEEEeCCC----------------------------------cE
Q 046899          236 KAHNADI-----------------HCVDWNPHDVNLILTGSADN----------------------------------SI  264 (407)
Q Consensus       236 ~~~~~~v-----------------~~l~~~~~~~~~l~tg~~dg----------------------------------~i  264 (407)
                      .++...+                 .+++|+| |++.|++++.|.                                  .|
T Consensus       148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l  226 (719)
T 1z68_A          148 NGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI  226 (719)
T ss_dssp             CCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred             CCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence            2332222                 4899999 999999887652                                  78


Q ss_pred             EEEeCCCCCCCCCCCce--------eeecCCCCCEEEEEEcCCCCCEEEEeeCC----CeEEEEe----CCCCCccccc-
Q 046899          265 HMFDRRKLTSDGVGSPI--------HKFEGHSAAVLCVQWSPDKSSVFGSSAED----GILNIWD----HEKIGEKQDY-  327 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~--------~~~~~h~~~v~~v~~~~~~~~ll~s~~~d----~~i~vwd----~~~~~~~~~~-  327 (407)
                      ++||+..      ++..        ..+.+|...+.+++|+||++ ++++....    ..|.+||    +.+++....+ 
T Consensus       227 ~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~  299 (719)
T 1z68_A          227 FIIDTTY------PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE  299 (719)
T ss_dssp             EEEESSC------HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred             EEEECCC------CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence            8999987      4432        22446888899999999976 55554322    2488999    8777666555 


Q ss_pred             ---ccCCCccc-----CCCCcCc
Q 046899          328 ---GELKYPII-----HPAYSSD  342 (407)
Q Consensus       328 ---~~~~~~v~-----~~~~s~d  342 (407)
                         ..+...+.     .+.||||
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          300 HIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTT
T ss_pred             cccccCCceEccccCCccEECCC
Confidence               35666666     7889888

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.67  E-value=1.8e-15  Score=136.13  Aligned_cols=241  Identities=14%  Similarity=0.082  Sum_probs=155.0

Q ss_pred             eeEEEEeec----ccccCccceEEEEeecccCcccCCcceeeEEEeeCC------CceEEEEEeCCCCeEEEEee-----
Q 046899           39 SLSCRWGPQ----LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHP------GEVNRIRELPQNSKIVATHT-----  103 (407)
Q Consensus        39 ~~s~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~tg~-----  103 (407)
                      ...+.|.|+    +++...++.+.+|-     ...    ......+...      ..+..++|+| ++++|++++     
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~  105 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKID-----LVT----GETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRL  105 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEE-----TTT----CCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEE
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEE-----CCC----CCeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccc
Confidence            345677664    34455566777771     111    1122222222      2678899999 777777775     


Q ss_pred             -------CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCC
Q 046899          104 -------DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGD  176 (407)
Q Consensus       104 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  176 (407)
                             .++.|.+||+.+++....+....                 .       +....+.+.+.   .++.+  ++.+
T Consensus       106 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----------------~-------~~~~~~s~dg~---~l~~~--~~~i  156 (337)
T 1pby_B          106 ELTHFEVQPTRVALYDAETLSRRKAFEAPR-----------------Q-------ITMLAWARDGS---KLYGL--GRDL  156 (337)
T ss_dssp             CSSCEEECCCEEEEEETTTTEEEEEEECCS-----------------S-------CCCEEECTTSS---CEEEE--SSSE
T ss_pred             ccccccccCceEEEEECCCCcEEEEEeCCC-----------------C-------cceeEECCCCC---EEEEe--CCeE
Confidence                   57899999998664433322110                 0       11111222222   12222  4678


Q ss_pred             CCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC-----------------------cEEEEEcCCCCCCcee
Q 046899          177 KPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS-----------------------CLILWDARSGSTPAVK  233 (407)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~~~~  233 (407)
                      .+||..+++.+..+..+.. ...+.|+|++..+++++..++                       .|.+||+.+++.. ..
T Consensus       157 ~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~  234 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR  234 (337)
T ss_dssp             EEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE
T ss_pred             EEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee
Confidence            8888888877666654331 112378888843333333333                       4689999988732 33


Q ss_pred             eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      ....+...+.+++|+| ++++++++  ++.|.+||+.+      ++.+..+..+ ..+.+++|+|++++|+ +++.++.|
T Consensus       235 ~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~~-~~~~~~~~s~dg~~l~-~~~~~~~i  303 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEK------NASIKRVPLP-HSYYSVNVSTDGSTVW-LGGALGDL  303 (337)
T ss_dssp             EEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTT------TEEEEEEECS-SCCCEEEECTTSCEEE-EESBSSEE
T ss_pred             ecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCC------CcCcceecCC-CceeeEEECCCCCEEE-EEcCCCcE
Confidence            4455667788999999 88988888  79999999988      7777777643 4678999999999775 56779999


Q ss_pred             EEEeCCCCCcccccccCC
Q 046899          314 NIWDHEKIGEKQDYGELK  331 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~~~~  331 (407)
                      ++||+.+++.+..+....
T Consensus       304 ~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          304 AAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EEEETTTCCEEEEEECGG
T ss_pred             EEEECcCCcEEEEEEcCC
Confidence            999999988777765543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=5.1e-15  Score=133.21  Aligned_cols=263  Identities=12%  Similarity=0.053  Sum_probs=169.3

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCC---CCCcccc
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP---GSAKSTA  159 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~---~~~~~~~  159 (407)
                      -+.+.+|++.| +++++++...++.+.+++......   +..+.. .+..++.|.+||..++........   .....++
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia   97 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFV---YQQRGL-GPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS   97 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSC---BSCGGG-CSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCccee---eccccc-ccccCCcEEEEECCCCeEEeccCCCccCCceEEE
Confidence            46799999999 789999988886655544432211   111111 011256777777764432211110   1111122


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcC-ceeeE---------eecccCEEEEEECC-CCCcEEEEEe-CCCcEEEEEcCCC
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIG-ARGKY---------LGHEDTVEDVQFCP-SSAQEFCSVG-DDSCLILWDARSG  227 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~---------~~~~~~v~~l~~~~-~~~~~l~s~~-~dg~i~iwd~~~~  227 (407)
                      .......+++...++.|.+|+..... .+..+         .++......|+++| ++ .++++.+ .++.|++||. ++
T Consensus        98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g  175 (329)
T 3fvz_A           98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SG  175 (329)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TS
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CC
Confidence            22233345666677788888875432 34444         23344689999999 66 7888886 6899999994 45


Q ss_pred             CCCceeeecc----------cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec--CCCCCEEEEE
Q 046899          228 STPAVKVEKA----------HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GHSAAVLCVQ  295 (407)
Q Consensus       228 ~~~~~~~~~~----------~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~h~~~v~~v~  295 (407)
                      .  ....+..          +-.....|+++|..++++++...++.|++||..+      ++.+..+.  .+...+.+++
T Consensus       176 ~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~------G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          176 K--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT------KEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             C--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT------CCEEEEECCTTTTTCEEEEE
T ss_pred             C--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC------CcEEEEEeccccCCCcceee
Confidence            5  3444322          2234789999993378888888899999999987      78888774  4567889999


Q ss_pred             EcC------CCCCEEEEeeCCCeEEEEeCCCCCcccccc---cCCCcccCCCCcCcchhccccceeeeeEeeCccceeee
Q 046899          296 WSP------DKSSVFGSSAEDGILNIWDHEKIGEKQDYG---ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVC  366 (407)
Q Consensus       296 ~~~------~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~  366 (407)
                      |+|      ++. ++++...+..|++||+.+++.+..+.   .+-..+.++++++|                  +..+++
T Consensus       248 ~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d------------------G~lyva  308 (329)
T 3fvz_A          248 YIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED------------------GTVYIG  308 (329)
T ss_dssp             EETTEEEEEECC-CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT------------------SEEEEE
T ss_pred             ecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC------------------CCEEEE
Confidence            999      333 22233445689999999988777663   33334455666665                  666777


Q ss_pred             EEEeeeEEEeecc
Q 046899          367 LTMVKVLEIWRMI  379 (407)
Q Consensus       367 ~~~d~~i~iwd~~  379 (407)
                      ...+++|++|++.
T Consensus       309 d~~~~~I~~~~~~  321 (329)
T 3fvz_A          309 DAHTNTVWKFTLT  321 (329)
T ss_dssp             ESSSCCEEEEEEE
T ss_pred             ECCCCEEEEEeCC
Confidence            7778899999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.65  E-value=2.3e-14  Score=129.84  Aligned_cols=218  Identities=8%  Similarity=0.009  Sum_probs=135.6

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEee-CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccc-cc--ccccCCCCC
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHT-DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDH-VS--ALAAEPGSA  155 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~-~~--~~~~~~~~~  155 (407)
                      ..|...+..++|+| ++++|++++ .++.|++|++........+...              ..... ..  .....+..+
T Consensus        82 ~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~--------------~~~~~~p~~~~~~~~~~~~  146 (347)
T 3hfq_A           82 VAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTV--------------QHSGHGPRPEQDGSHIHYT  146 (347)
T ss_dssp             EEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEE--------------ECCCCCSSTTCSSCCEEEE
T ss_pred             ecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeeccee--------------ecCCCCCCccccCCCceEE
Confidence            45788899999999 777777776 7889999999643221111100              00000 00  000001111


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCC-CcCcee--eEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCC
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESP-SIGARG--KYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GST  229 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~--~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~  229 (407)
                      .+.+.|.   .+++...++.+.+|++. .++...  .+.. .......++|+|+|..+++++..++.|.+|++..  +..
T Consensus       147 ~~spdg~---l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  223 (347)
T 3hfq_A          147 DLTPDNR---LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF  223 (347)
T ss_dssp             EECTTSC---EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             EECCCCc---EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce
Confidence            2222332   34555567788889887 443222  1222 2336788999999944566667789999999985  331


Q ss_pred             CceeeecccC------cceEEEEecCCCCCEE-EEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC
Q 046899          230 PAVKVEKAHN------ADIHCVDWNPHDVNLI-LTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS  302 (407)
Q Consensus       230 ~~~~~~~~~~------~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  302 (407)
                      ..........      ..+..++|+| ++++| ++...++.|.+||+....   ..+.+..+..+...+..++|+|+|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g---~~~~~~~~~~~~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          224 TQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADG---HLTLIQQISTEGDFPRDFDLDPTEAF  299 (347)
T ss_dssp             EEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECGGG---CEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred             EEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECCCC---cEEEeEEEecCCCCcCeEEECCCCCE
Confidence            1122222222      3588899999 88876 556668999999997311   03556666666777899999999998


Q ss_pred             EEEEeeCCCeEEEEeCC
Q 046899          303 VFGSSAEDGILNIWDHE  319 (407)
Q Consensus       303 ll~s~~~d~~i~vwd~~  319 (407)
                      |++++..++.|.+|++.
T Consensus       300 l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          300 VVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEe
Confidence            87566667999999543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.64  E-value=2.6e-15  Score=150.03  Aligned_cols=147  Identities=12%  Similarity=0.185  Sum_probs=103.0

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG  162 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  162 (407)
                      ......++|+| ++++|+++  ||+|++||+.++++...+..+...                                  
T Consensus        16 ~~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~----------------------------------   58 (740)
T 4a5s_A           16 RLKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD----------------------------------   58 (740)
T ss_dssp             CCCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT----------------------------------
T ss_pred             cccccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhh----------------------------------
Confidence            34466889999 88899887  899999999987654333222110                                  


Q ss_pred             CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC---------CcEEEEEcCCCCCCcee
Q 046899          163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD---------SCLILWDARSGSTPAVK  233 (407)
Q Consensus       163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~  233 (407)
                                                   .+......++|+|+| +.++.++.+         +.+.+||+.+++   ..
T Consensus        59 -----------------------------~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~~  105 (740)
T 4a5s_A           59 -----------------------------EFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LI  105 (740)
T ss_dssp             -----------------------------TCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---EC
T ss_pred             -----------------------------hhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCc---EE
Confidence                                         011123468899999 777777765         567799999887   33


Q ss_pred             eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCE-----------------EEEE
Q 046899          234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAV-----------------LCVQ  295 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v-----------------~~v~  295 (407)
                      .+..+...+...+|+| ||+.||.+. ++.|++||+..      ++..+ +..++...+                 ..+.
T Consensus       106 ~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~------~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~  177 (740)
T 4a5s_A          106 TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (740)
T ss_dssp             CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCC------CceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence            4566778899999999 999998875 78999999987      44332 222333222                 3589


Q ss_pred             EcCCCCCEEEEee
Q 046899          296 WSPDKSSVFGSSA  308 (407)
Q Consensus       296 ~~~~~~~ll~s~~  308 (407)
                      |||||++| |.++
T Consensus       178 wSpDg~~l-a~~~  189 (740)
T 4a5s_A          178 WSPNGTFL-AYAQ  189 (740)
T ss_dssp             ECTTSSEE-EEEE
T ss_pred             ECCCCCEE-EEEE
Confidence            99999976 4554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.64  E-value=2.1e-14  Score=129.79  Aligned_cols=236  Identities=10%  Similarity=0.066  Sum_probs=146.1

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCC--ceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcCCCCcccccC
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPG--EVNRIRELPQNSK-IVATHTDSPDVLIWDVEAQPNRHAVLG  124 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~~~~~~~  124 (407)
                      ++++..++.+.+|-.     .    ..+....+....  .+..++|+| +++ +++++..++.|.+||+.+++....+..
T Consensus        14 ~v~~~~~~~v~~~d~-----~----~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B           14 MIVTNYPNNLHVVDV-----A----SDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             EEEEETTTEEEEEET-----T----TTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             EEEeCCCCeEEEEEC-----C----CCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            456666778888811     1    112233333333  688999999 655 556667789999999987755433321


Q ss_pred             cCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccC------------CCCCCCCCCCCcCc---eee
Q 046899          125 AADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSG------------GNGDKPLESPSIGA---RGK  189 (407)
Q Consensus       125 ~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~i~i~d~~~~~~---~~~  189 (407)
                      ....      .           .....+....+.+.|.   .++++..            ++.+.+||+.+++.   +..
T Consensus        84 ~~~~------~-----------~~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  143 (349)
T 1jmx_B           84 SSVP------G-----------EVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  143 (349)
T ss_dssp             CCST------T-----------EEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             cccc------c-----------cccccccceEECCCCC---EEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence            1100      0           0000011111122221   1222222            37788888877443   333


Q ss_pred             EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-------------------------------
Q 046899          190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-------------------------------  238 (407)
Q Consensus       190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------------  238 (407)
                      +. +...+.+++|+|++ ++ ++++  +.|.+||+.+++  ....+..+                               
T Consensus       144 ~~-~~~~~~~~~~s~dg-~l-~~~~--~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (349)
T 1jmx_B          144 FP-MPRQVYLMRAADDG-SL-YVAG--PDIYKMDVKTGK--YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  216 (349)
T ss_dssp             EE-CCSSCCCEEECTTS-CE-EEES--SSEEEECTTTCC--EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             cc-CCCcccceeECCCC-cE-EEcc--CcEEEEeCCCCc--eeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence            33 34468899999999 54 4444  349999998876  23222211                               


Q ss_pred             -------------------------------------CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899          239 -------------------------------------NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       239 -------------------------------------~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                                                           ...+.+++|+|.++++++++  ++.|.+||+++      ++.+
T Consensus       217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~------~~~~  288 (349)
T 1jmx_B          217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ------RKLI  288 (349)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT------TEEE
T ss_pred             eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc------CeEE
Confidence                                                 11344566777456777777  88999999998      7777


Q ss_pred             eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899          282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL  330 (407)
Q Consensus       282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  330 (407)
                      ..+.. ...+.+++|+|++++|+ +++.++.|++||+.+++.+..+...
T Consensus       289 ~~~~~-~~~~~~~~~s~dg~~l~-~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          289 KAANL-DHTYYCVAFDKKGDKLY-LGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEEC-SSCCCEEEECSSSSCEE-EESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEcC-CCCccceEECCCCCEEE-EecCCCeEEEEeccccceeeeeecC
Confidence            77764 34578999999999886 5677899999999998877766543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.63  E-value=5.5e-15  Score=135.96  Aligned_cols=264  Identities=11%  Similarity=0.043  Sum_probs=160.7

Q ss_pred             eCCCceEE-----EEEeCCCCeEEEEeeC-CCc--EEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899           81 IHPGEVNR-----IRELPQNSKIVATHTD-SPD--VLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP  152 (407)
Q Consensus        81 ~h~~~v~~-----l~~~~~~~~~l~tg~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~  152 (407)
                      .|......     .+|+| +++.|+.++. +|.  |.+||+.+++.......+.....                      
T Consensus        28 ~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~----------------------   84 (388)
T 3pe7_A           28 PPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTF----------------------   84 (388)
T ss_dssp             CTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSS----------------------
T ss_pred             CCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCcc----------------------
Confidence            45555555     78999 8888888776 674  77788877654443322211100                      


Q ss_pred             CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEE--ECCCCCcEEEEE-----------------
Q 046899          153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQ--FCPSSAQEFCSV-----------------  213 (407)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~--~~~~~~~~l~s~-----------------  213 (407)
                       ...+.+.|   ..++....++.+.+||+.+++....+..+...+....  ++|++ .+++..                 
T Consensus        85 -~~~~spdg---~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           85 -GGFLSPDD---DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             -SCEECTTS---SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHH
T ss_pred             -ceEEcCCC---CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhh
Confidence             01111122   2345555567788889888887766666666554444  48888 566532                 


Q ss_pred             -----eCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCCcee
Q 046899          214 -----GDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD------NSIHMFDRRKLTSDGVGSPIH  282 (407)
Q Consensus       214 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d------g~i~vwd~~~~~~~~~~~~~~  282 (407)
                           ..+..|.+||+.+++   ...+..+...+..+.|+|.+++.|+....+      ..|.++|...       ....
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~~~~  229 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGE---STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-------TNMR  229 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-------CCCE
T ss_pred             hhhccCCcceEEEEECCCCc---eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-------CceE
Confidence                 245789999999876   344446677789999999456666665543      3788888765       3344


Q ss_pred             eecCCC--CCEEEEEEcCCCCCEEEEeeCCC----eEEEEeCCCCCcc--cccccCC---CcccCCCCcCcchhccccce
Q 046899          283 KFEGHS--AAVLCVQWSPDKSSVFGSSAEDG----ILNIWDHEKIGEK--QDYGELK---YPIIHPAYSSDMLDIETKLL  351 (407)
Q Consensus       283 ~~~~h~--~~v~~v~~~~~~~~ll~s~~~d~----~i~vwd~~~~~~~--~~~~~~~---~~v~~~~~s~d~~~~~~~~~  351 (407)
                      .+..+.  ..+..++|+|+|+.|+..+..++    .|.+||+.+++..  ..+.+..   .......||||         
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd---------  300 (388)
T 3pe7_A          230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD---------  300 (388)
T ss_dssp             ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE---------
T ss_pred             EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC---------
Confidence            454444  35888999999998744443322    3999999987632  2222210   01233467777         


Q ss_pred             eeeeEeeCccceeeeE---------EEeeeEEEeeccccccCChHHHHHHHhhccc-----------ceeEeeccC
Q 046899          352 TSIGMHLIHGRLLVCL---------TMVKVLEIWRMIDLIYRPEEEVLAELDKFKS-----------HIFGCDKSC  407 (407)
Q Consensus       352 ~~~~~~~~~~~~i~~~---------~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~s~  407 (407)
                               +..|+..         ..+..|++||+.      +++. ..+..|..           .+.+++||+
T Consensus       301 ---------g~~l~~~~~~~~~~~~~~~~~i~~~d~~------~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~sp  360 (388)
T 3pe7_A          301 ---------GSDAPVDVQDDSGYKIENDPFLYVFNMK------NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTP  360 (388)
T ss_dssp             ---------ECCC------------CCCCEEEEEETT------TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred             ---------CCcceeEeeeccccccCCCCEEEEEecc------CCce-EEeccccCcccccccccccCCCCccCCC
Confidence                     5555533         334589999997      3332 34555555           467777775

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=3.4e-14  Score=125.02  Aligned_cols=244  Identities=11%  Similarity=0.100  Sum_probs=156.5

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      +|-..+.++++.+ +++++++...++.|.+||.. +.....+......    .+.             ...+..+.+  .
T Consensus        27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~----~~~-------------~~~p~~i~~--~   85 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR----DSQ-------------LLYPNRVAV--V   85 (286)
T ss_dssp             TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS----TTC-------------BSSEEEEEE--E
T ss_pred             CccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCC----ccc-------------ccCceEEEE--E
Confidence            3556789999998 78888888889999999976 3322222110000    000             000000000  0


Q ss_pred             CCCCCcccccc-CCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--
Q 046899          161 GGANSKNASKS-GGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--  236 (407)
Q Consensus       161 ~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  236 (407)
                      .......++.. .++.+.+|| ..++.+..+.. +...+.+++++|++ +++++...++.|.+||.. ++  ....+.  
T Consensus        86 ~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~  160 (286)
T 1q7f_A           86 RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GN--VLHKFGCS  160 (286)
T ss_dssp             TTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEEECT
T ss_pred             cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CC--EEEEeCCC
Confidence            01111222222 266788888 55665555532 34578999999998 788888888999999964 33  233332  


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--CCCEEEEEEcCCCCCEEEEeeCCC-eE
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--SAAVLCVQWSPDKSSVFGSSAEDG-IL  313 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~ll~s~~~d~-~i  313 (407)
                      .+...+.+++++| +++++++...++.|++||..       ++.+..+..+  ...+..++++++|. ++++...++ .|
T Consensus       161 ~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i  231 (286)
T 1q7f_A          161 KHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNL  231 (286)
T ss_dssp             TTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEE
T ss_pred             CccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-------CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEE
Confidence            3445689999999 88888887889999999975       4666666543  36789999999997 666777775 99


Q ss_pred             EEEeCCCCCcccccccCCC--cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          314 NIWDHEKIGEKQDYGELKY--PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .+||.. ++.+..+..+..  .+.+++++++                  +..+++ +.+++|++|++.
T Consensus       232 ~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~------------------g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          232 TIFTQD-GQLISALESKVKHAQCFDVALMDD------------------GSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             EEECTT-SCEEEEEEESSCCSCEEEEEEETT------------------TEEEEE-ETTTEEEEEECS
T ss_pred             EEECCC-CCEEEEEcccCCCCcceeEEECCC------------------CcEEEE-CCCCeEEEEEcc
Confidence            999964 455555543322  1234444444                  555555 568899999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.62  E-value=9.4e-15  Score=144.28  Aligned_cols=276  Identities=12%  Similarity=0.040  Sum_probs=165.0

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEe--eCCCcEEEEeCcCCCCcccccCcCCCCCCC----CCcEEEEeccccccccccCCC
Q 046899           80 IIHPGEVNRIRELPQNSKIVATH--TDSPDVLIWDVEAQPNRHAVLGAADSHPDL----DQSVVLWSIQDHVSALAAEPG  153 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----d~~i~~w~~~~~~~~~~~~~~  153 (407)
                      .+|...+..+++++ +.-++++.  +.++...||....+.....+..+...+...    .+....|..         +  
T Consensus        20 ~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------S--   87 (662)
T 3azo_A           20 ASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVP---------R--   87 (662)
T ss_dssp             HHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEEC---------C--
T ss_pred             hhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeee---------e--
Confidence            36899999999998 66667776  568899999964433333333222110000    000000110         0  


Q ss_pred             CCcccccCCCCCc-ccccc-CCCCCCCCCCC--CcCceeeEee-----cccCEEEEEECCCCCcEEEEEeCC--------
Q 046899          154 SAKSTASGGANSK-NASKS-GGNGDKPLESP--SIGARGKYLG-----HEDTVEDVQFCPSSAQEFCSVGDD--------  216 (407)
Q Consensus       154 ~~~~~~~~~~~~~-~~~~~-~~~~i~i~d~~--~~~~~~~~~~-----~~~~v~~l~~~~~~~~~l~s~~~d--------  216 (407)
                           ++|   .. ++... .+..+.+++..  .......+..     |...+..++|+|+| +.|+.++.+        
T Consensus        88 -----PDg---~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           88 -----PAG---GPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             -----SSS---SCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTC
T ss_pred             -----cCC---CeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCC
Confidence                 111   12 22221 13334444443  2033444444     56788999999999 778777766        


Q ss_pred             --CcEEEEEcCC------CCCCceeeec-ccCcceEEEEecCCCCCEEEEEeCC--------CcEEEEeCC-CCCCCCCC
Q 046899          217 --SCLILWDARS------GSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSAD--------NSIHMFDRR-KLTSDGVG  278 (407)
Q Consensus       217 --g~i~iwd~~~------~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~d--------g~i~vwd~~-~~~~~~~~  278 (407)
                        ..|.+||+.+      +.   ...+. .+...+..++|+| |++.|+.++.+        ..|++||+. +      +
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~------g  228 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTED------G  228 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTT------S
T ss_pred             ceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCC------C
Confidence              5899999987      44   33444 5566788899999 99999877755        379999998 4      4


Q ss_pred             ---CceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceee
Q 046899          279 ---SPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTS  353 (407)
Q Consensus       279 ---~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  353 (407)
                         +.......|...+..++|+|||+ +++++..++  .|.+||+.+++.. .+..+...+....|+++.        ..
T Consensus       229 ~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~--------~~  298 (662)
T 3azo_A          229 RFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGM--------RW  298 (662)
T ss_dssp             CEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTC--------CS
T ss_pred             cccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccC--------ce
Confidence               33333344578899999999999 667888888  6777776554433 333334444455555541        11


Q ss_pred             eeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEe
Q 046899          354 IGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC  403 (407)
Q Consensus       354 ~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~  403 (407)
                       +.....+..+++++. +.++||.+...    .++ +..+..|.+.+..+
T Consensus       299 -~~~~~~~~~~~~~~~-~~~~l~~~d~~----~~~-~~~l~~~~~~~~~~  341 (662)
T 3azo_A          299 -FAPLANGLIAVVHGK-GAAVLGILDPE----SGE-LVDAAGPWTEWAAT  341 (662)
T ss_dssp             -EEECTTSCEEEEEBS-SSCEEEEEETT----TTE-EEECCSSCCEEEEE
T ss_pred             -EeEeCCCEEEEEEEc-CccEEEEEECC----CCc-EEEecCCCCeEEEE
Confidence             222222556777777 89999955310    222 44556666666665

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.62  E-value=2e-15  Score=146.72  Aligned_cols=229  Identities=12%  Similarity=0.022  Sum_probs=149.4

Q ss_pred             eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEecccccc-ccccCC-CCCcccccCCCCCccccccC--
Q 046899           97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVS-ALAAEP-GSAKSTASGGANSKNASKSG--  172 (407)
Q Consensus        97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~--  172 (407)
                      -+.++.+.||...++--..                 ++++.+|++.++.. .+..+. ..+........ ..++++..  
T Consensus        24 ~~~~~~~~DG~~la~~s~~-----------------~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~   85 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFS-----------------EGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSK   85 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEE-----------------TTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECST
T ss_pred             hheeecCCCCCeEEEEEcc-----------------CCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCC
Confidence            3455566677655553211                 67899999865532 222222 12222222222 23333322  


Q ss_pred             -CCCCCCCCCCC---cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec
Q 046899          173 -GNGDKPLESPS---IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN  248 (407)
Q Consensus       173 -~~~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~  248 (407)
                       +...++|....   +... .+.. ...+...+|+|++..++++.+.++.+.+||+.+++  .... ..+..  .+++|+
T Consensus        86 g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--~~~l-~~~~~--~~~~~s  158 (582)
T 3o4h_A           86 GAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG--LREL-ARLPG--FGFVSD  158 (582)
T ss_dssp             TSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE--EEEE-EEESS--CEEEEE
T ss_pred             CCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc--EEEe-ecCCC--ceEEEC
Confidence             33334543322   2222 2222 22344567777774444454555556699998876  2332 23333  789999


Q ss_pred             CCCCCEEEEEeCC----CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC--eEEEEeCCCCC
Q 046899          249 PHDVNLILTGSAD----NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--ILNIWDHEKIG  322 (407)
Q Consensus       249 ~~~~~~l~tg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~--~i~vwd~~~~~  322 (407)
                      | ||+++++++.+    +.|++||+.+      ++. ..+..|...+..++|+|||+.| +++..++  .|++||+.+++
T Consensus       159 p-DG~~la~~~~~~~~~~~i~~~d~~~------g~~-~~l~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          159 I-RGDLIAGLGFFGGGRVSLFTSNLSS------GGL-RVFDSGEGSFSSASISPGMKVT-AGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             E-ETTEEEEEEEEETTEEEEEEEETTT------CCC-EEECCSSCEEEEEEECTTSCEE-EEEECSSCEEEEEECTTTCC
T ss_pred             C-CCCEEEEEEEcCCCCeEEEEEcCCC------CCc-eEeecCCCccccceECCCCCEE-EEccCCCeeEEEEEcCCCCc
Confidence            9 99999988777    7899999987      444 4777888999999999999976 5888888  89999999877


Q ss_pred             cccccccCCCcccCCC--------CcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          323 EKQDYGELKYPIIHPA--------YSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       323 ~~~~~~~~~~~v~~~~--------~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      .. .+..+...+..+.        ||||                  +..+++++.+++++||++
T Consensus       230 ~~-~~~~~~~~~~~~~~~~~~~~~~spd------------------g~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          230 VE-DLELPSKDFSSYRPTAITWLGYLPD------------------GRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EE-ECCCSCSHHHHHCCSEEEEEEECTT------------------SCEEEEEEETTEEEEEET
T ss_pred             EE-EccCCCcChhhhhhccccceeEcCC------------------CcEEEEEEcCCcEEEEEE
Confidence            66 6667777777788        8888                  777788999999999998

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.59  E-value=4.8e-13  Score=121.83  Aligned_cols=216  Identities=9%  Similarity=0.091  Sum_probs=126.6

Q ss_pred             CCCceEEEEEeCCCCeEEEEe-eCCCcEEEEeCcCCCCcccccC---cCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           82 HPGEVNRIRELPQNSKIVATH-TDSPDVLIWDVEAQPNRHAVLG---AADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      +......+++   ++++|+++ ..++.|.+|++........+..   +....+.            .......++..+.+
T Consensus        98 ~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~~~  162 (361)
T 3scy_A           98 MGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD------------KERQTMPHLHCVRI  162 (361)
T ss_dssp             SSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC------------TTTCSSCCEEEEEE
T ss_pred             CCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC------------ccccCCCcceEEEE
Confidence            5567777876   44445444 4688999999976443322211   0000000            00000001111222


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCc------e-------eeEeecccCEEEEEECCCCCcEEEEEe-CCCcEEEEE
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGA------R-------GKYLGHEDTVEDVQFCPSSAQEFCSVG-DDSCLILWD  223 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~------~-------~~~~~~~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd  223 (407)
                      .+.|..  .+++...++.+.+|++.....      +       .....+......++|+|++ +++++++ .++.|.+||
T Consensus       163 spdg~~--l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~  239 (361)
T 3scy_A          163 TPDGKY--LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFR  239 (361)
T ss_dssp             CTTSSE--EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEE
T ss_pred             CCCCCE--EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEE
Confidence            222321  233344567788886654331      1       1122345567899999999 5555555 689999999


Q ss_pred             cCCCCCCceeee---cccCcceEEEEecCCCCCEEEEEeCC--CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899          224 ARSGSTPAVKVE---KAHNADIHCVDWNPHDVNLILTGSAD--NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP  298 (407)
Q Consensus       224 ~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~tg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  298 (407)
                      +.++........   ..+......++|+| ++++|+++..+  +.|.+|++....  +..+.+..+.. ...+.+++|+|
T Consensus       240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~--g~~~~~~~~~~-g~~~~~~~~sp  315 (361)
T 3scy_A          240 YADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETN--GTLTKVGYQLT-GIHPRNFIITP  315 (361)
T ss_dssp             EETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTT--CCEEEEEEEEC-SSCCCEEEECT
T ss_pred             ecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCC--CcEEEeeEecC-CCCCceEEECC
Confidence            986652112222   22334568999999 88988666654  899999996311  00224555554 55788999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCC
Q 046899          299 DKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       299 ~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      +|++|++++..++.|.+|++.
T Consensus       316 dg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          316 NGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             TSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEEEE
Confidence            999887666578999996544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.57  E-value=1.2e-13  Score=126.92  Aligned_cols=256  Identities=10%  Similarity=0.029  Sum_probs=148.7

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC------CCCCCcEEEE-eccccccccccCCC
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH------PDLDQSVVLW-SIQDHVSALAAEPG  153 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~d~~i~~w-~~~~~~~~~~~~~~  153 (407)
                      +|...+..+.|+| +++.|+.++.++.|.+||+.+++.......+....      ...|+...+. .....         
T Consensus        78 ~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~---------  147 (388)
T 3pe7_A           78 GRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRE---------  147 (388)
T ss_dssp             SSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGG---------
T ss_pred             CCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCc---------
Confidence            3444555778999 88899999999999999999876544332221100      0001111110 00000         


Q ss_pred             CCcccccCCCC--CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCC------CcEEEEEc
Q 046899          154 SAKSTASGGAN--SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDD------SCLILWDA  224 (407)
Q Consensus       154 ~~~~~~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~  224 (407)
                        ...+.....  ........+..+.+||+.+++. ..+..+...+..++|+| ++ ..|+.++.+      ..|.++|+
T Consensus       148 --~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          148 --DWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             --GCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEET
T ss_pred             --ccccccccchhhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeC
Confidence              000000000  0011233446778888888764 44445677899999999 88 667666653      37888887


Q ss_pred             CCCCCCceeeecccC--cceEEEEecCCCCCEEEEEeC-CC----cEEEEeCCCCCCCCCCC--ceeeecCCCCC---EE
Q 046899          225 RSGSTPAVKVEKAHN--ADIHCVDWNPHDVNLILTGSA-DN----SIHMFDRRKLTSDGVGS--PIHKFEGHSAA---VL  292 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~l~tg~~-dg----~i~vwd~~~~~~~~~~~--~~~~~~~h~~~---v~  292 (407)
                      ..+.   ...+..+.  ..+..+.|+| +++.|+..+. ++    .|++||+.+      ++  .+..+.++...   ..
T Consensus       224 ~~~~---~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~------g~~~~l~~~~~~~~~~~~~~  293 (388)
T 3pe7_A          224 DGTN---MRKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPET------LENRQLTSMPACSHLMSNYD  293 (388)
T ss_dssp             TSCC---CEESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTT------CCEEEEEEECCEEEEEECTT
T ss_pred             CCCc---eEEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCC------CceEEEEcCCCceeeeecCC
Confidence            6555   23333333  3577899999 8876654333 22    399999987      44  33344331110   11


Q ss_pred             EEEEcCCCCCEEEEe--------eCCCeEEEEeCCCCCcccccccCCC-----------cccCCCCcCcchhccccceee
Q 046899          293 CVQWSPDKSSVFGSS--------AEDGILNIWDHEKIGEKQDYGELKY-----------PIIHPAYSSDMLDIETKLLTS  353 (407)
Q Consensus       293 ~v~~~~~~~~ll~s~--------~~d~~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~s~d~~~~~~~~~~~  353 (407)
                      .++|+|+|++|+++.        ..+..|.+||+.+++ ...+..+..           .+..++||||           
T Consensus       294 ~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spD-----------  361 (388)
T 3pe7_A          294 GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT-QHRVARHDTSWKVFEGDRQVTHPHPSFTPD-----------  361 (388)
T ss_dssp             SSEEEEEECCC------------CCCCEEEEEETTTTE-EEEEEECCCCCCCBTTBSSTTCCCCEECTT-----------
T ss_pred             CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc-eEEeccccCcccccccccccCCCCccCCCC-----------
Confidence            237999999875443        457799999998854 344444443           4677889988           


Q ss_pred             eeEeeCccceeeeEE-EeeeEEEeecc
Q 046899          354 IGMHLIHGRLLVCLT-MVKVLEIWRMI  379 (407)
Q Consensus       354 ~~~~~~~~~~i~~~~-~d~~i~iwd~~  379 (407)
                             +..|+..+ .++...||.+.
T Consensus       362 -------g~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          362 -------DKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             -------SSEEEEEECTTSSCEEEEEE
T ss_pred             -------CCEEEEEecCCCceeEEEEE
Confidence                   66666554 35666666554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.52  E-value=4.3e-13  Score=134.05  Aligned_cols=162  Identities=9%  Similarity=0.110  Sum_probs=104.3

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcce-----------------EEEEecCCCCCE
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI-----------------HCVDWNPHDVNL  254 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----------------~~l~~~~~~~~~  254 (407)
                      .|...+...+|+|+| +.||.+. |+.|.+||+.++.. ...+..++...+                 ..+.|+| |++.
T Consensus       109 ~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~-~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~  184 (740)
T 4a5s_A          109 RIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTF  184 (740)
T ss_dssp             CCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSE
T ss_pred             cCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCce-EEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCE
Confidence            355678999999999 6777774 68999999987762 122222332222                 3589999 9999


Q ss_pred             EEEEeCCC------------------------------------cEEEEeCCC---CCCCCCCCceeeec------CCCC
Q 046899          255 ILTGSADN------------------------------------SIHMFDRRK---LTSDGVGSPIHKFE------GHSA  289 (407)
Q Consensus       255 l~tg~~dg------------------------------------~i~vwd~~~---~~~~~~~~~~~~~~------~h~~  289 (407)
                      ||.++.|.                                    .|++||+.+   ..    ......+.      +|..
T Consensus       185 la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~----~~~~~~l~~~~~~~~~~~  260 (740)
T 4a5s_A          185 LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT----NATSIQITAPASMLIGDH  260 (740)
T ss_dssp             EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS----CCCEEEECCCHHHHTSCE
T ss_pred             EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC----cceEEEecCCccCCCCCe
Confidence            98875432                                    466777764   21    00233343      3777


Q ss_pred             CEEEEEEcCCCCCEEEEee---CCCeEEEEeCCCCC----c--cccc--ccCCCccc-----CCCCcCcchhccccceee
Q 046899          290 AVLCVQWSPDKSSVFGSSA---EDGILNIWDHEKIG----E--KQDY--GELKYPII-----HPAYSSDMLDIETKLLTS  353 (407)
Q Consensus       290 ~v~~v~~~~~~~~ll~s~~---~d~~i~vwd~~~~~----~--~~~~--~~~~~~v~-----~~~~s~d~~~~~~~~~~~  353 (407)
                      .+..++|+|||+.++....   .+..|.+||+.+++    +  ...+  ..+...+.     .+.||||           
T Consensus       261 ~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD-----------  329 (740)
T 4a5s_A          261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD-----------  329 (740)
T ss_dssp             EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT-----------
T ss_pred             EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC-----------
Confidence            8999999999985433322   23479999999876    2  2222  34555544     6788888           


Q ss_pred             eeEeeCccceee-eEEEe---eeEEEeecc
Q 046899          354 IGMHLIHGRLLV-CLTMV---KVLEIWRMI  379 (407)
Q Consensus       354 ~~~~~~~~~~i~-~~~~d---~~i~iwd~~  379 (407)
                             +..|+ ..+..   ..|++||..
T Consensus       330 -------G~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          330 -------GNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             -------SSEEEEEEECTTSCEEEEEEETT
T ss_pred             -------CCEEEEEEEcCCCceEEEEEECC
Confidence                   55555 44432   378888875

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=2e-13  Score=124.29  Aligned_cols=263  Identities=9%  Similarity=0.006  Sum_probs=165.6

Q ss_pred             EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcc
Q 046899           88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      .++|+| ++++|+++.          .++.|.+||..+.+....+......                 ......+....+
T Consensus        54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-----------------~~~g~~p~~i~~  115 (361)
T 2oiz_A           54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-----------------VQGLNYDGLFRQ  115 (361)
T ss_dssp             EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-----------------CCBCCCGGGEEE
T ss_pred             ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-----------------cccCCCcceEEE
Confidence            899999 787777775          3567999999876655443221000                 000001122222


Q ss_pred             cccCCCCCcccccc--CCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee-
Q 046899          158 TASGGANSKNASKS--GGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK-  233 (407)
Q Consensus       158 ~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-  233 (407)
                      .+.|+   .+..+.  .++.+.+||..+++.+.. +. .. ....+.+.|.+...+++.+.||.+.+|++..... ... 
T Consensus       116 spdg~---~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~~~  189 (361)
T 2oiz_A          116 TTDGK---FIVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK-VASQ  189 (361)
T ss_dssp             CTTSS---EEEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS-EEEE
T ss_pred             CCCCC---EEEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc-Eeee
Confidence            23332   232222  257889999998877666 43 22 2233567787767888999999999999875331 221 


Q ss_pred             -----eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC------C----CCEEEEEEcC
Q 046899          234 -----VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH------S----AAVLCVQWSP  298 (407)
Q Consensus       234 -----~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h------~----~~v~~v~~~~  298 (407)
                           .+.....++ .+.++| ++..++..+.++.|.++|+....    ......+...      .    .....++|+|
T Consensus       190 ~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~  263 (361)
T 2oiz_A          190 SRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDE----VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR  263 (361)
T ss_dssp             EECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSS----CEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred             ccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCC----ceecccccccCccccccccccCCeeEEEEec
Confidence                 111122222 333456 56677777789999999987521    1122222110      0    1112378999


Q ss_pred             CCCCEEEEee----------CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEE
Q 046899          299 DKSSVFGSSA----------EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLT  368 (407)
Q Consensus       299 ~~~~ll~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~  368 (407)
                      ++.+++++..          ..+.|.+||+.+.+.+.++..+.  +.+++|+||                  +.++++++
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spd------------------g~~l~v~n  323 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQ------------------RNLMLTLD  323 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETT------------------TTEEEEEC
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCC------------------CCEEEEeC
Confidence            9998886654          13589999999999888888766  788999998                  77777666


Q ss_pred             EeeeEEEeeccccccCChH--HHHHHHhhcccceeEeeccC
Q 046899          369 MVKVLEIWRMIDLIYRPEE--EVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       369 ~d~~i~iwd~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~  407 (407)
                      . ++|.|||..      ++  ++++.+.++-.....++|+|
T Consensus       324 ~-~~v~v~D~~------t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          324 G-GNVNVYDIS------QPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             S-SCEEEEECS------SSSCEEEEEETTSCSSEEEEEECC
T ss_pred             C-CeEEEEECC------CCcceeeEEeccCCCCcEEEEecC
Confidence            5 999999998      67  77777655556667777764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.48  E-value=3.4e-12  Score=111.06  Aligned_cols=238  Identities=8%  Similarity=-0.038  Sum_probs=144.0

Q ss_pred             ceEEEEEeCCCCeEEE-EeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           85 EVNRIRELPQNSKIVA-THTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~-tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      ...++++.+ ++++++ +...++.|.+||..+............                       .+..+.+...+  
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------~p~~i~~~~~g--   78 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY-----------------------QPQGLAVDGAG--   78 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCC-----------------------SCCCEEECTTC--
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcC-----------------------CcceeEECCCC--
Confidence            778899888 777777 557788999998765432211000000                       01111111111  


Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH  243 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  243 (407)
                       ...++.. ++.+.+||................+..++++|++ +++++...++.|.+||..+..  ...........+.
T Consensus        79 -~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~  153 (270)
T 1rwi_B           79 -TVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPD  153 (270)
T ss_dssp             -CEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCS--CEECCCCSCCSCC
T ss_pred             -CEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCce--eEeeccccCCCce
Confidence             1122222 5556666655443322111233578999999998 777777778899999865544  2222223334678


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      ++++++ +++++++...++.|.+||...      .........+...+.+++++++|. ++++...++.|.+||......
T Consensus       154 ~i~~~~-~g~l~v~~~~~~~i~~~~~~~------~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          154 GVAVDN-SGNVYVTDTDNNRVVKLEAES------NNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CEEECT-TCCEEEEEGGGTEEEEECTTT------CCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCC
T ss_pred             eEEEeC-CCCEEEEECCCCEEEEEecCC------CceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcc
Confidence            899999 888777777788999999876      333333233336789999999995 777777788999999876433


Q ss_pred             ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      ......+-..+.+++++++                  +..+++...+++|+++++.
T Consensus       226 ~~~~~~~~~~p~~i~~~~~------------------g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          226 TVLPFTGLNTPLAVAVDSD------------------RTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             EECCCCSCSCEEEEEECTT------------------CCEEEEEGGGTEEEEECCC
T ss_pred             eeeccCCCCCceeEEECCC------------------CCEEEEECCCCEEEEEcCC
Confidence            2211111122334444444                  5666677778899999987

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.48  E-value=2.6e-12  Score=115.50  Aligned_cols=162  Identities=6%  Similarity=0.037  Sum_probs=114.1

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      ...+...+.+++|.| ++++++++..++.|.+||..+++...                                      
T Consensus        40 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~--------------------------------------   80 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKR--------------------------------------   80 (333)
T ss_dssp             EESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEE--------------------------------------
T ss_pred             EeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEE--------------------------------------
Confidence            345667789999998 78888888888999999886543111                                      


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCCCCceee
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD----SCLILWDARSGSTPAVKV  234 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~  234 (407)
                                                    ....+...+.+++++|++ ++++++..+    +.|.+||..++..  ...
T Consensus        81 ------------------------------~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~--~~~  127 (333)
T 2dg1_A           81 ------------------------------PFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNL--QDI  127 (333)
T ss_dssp             ------------------------------EEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSC--EEE
T ss_pred             ------------------------------EeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEE--EEE
Confidence                                          011234578999999998 777777666    6899999887662  212


Q ss_pred             e--cccCcceEEEEecCCCCCEEEEEeC------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899          235 E--KAHNADIHCVDWNPHDVNLILTGSA------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       235 ~--~~~~~~v~~l~~~~~~~~~l~tg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                      .  ......+..++++| +++++++...      .+.|..+|...      ++ +..+..+...+..++|+|+++.|+++
T Consensus       128 ~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~------~~-~~~~~~~~~~~~~i~~~~dg~~l~v~  199 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF------RT-VTPIIQNISVANGIALSTDEKVLWVT  199 (333)
T ss_dssp             ECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS------CC-EEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             EccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC------CE-EEEeecCCCcccceEECCCCCEEEEE
Confidence            2  13445789999999 8887776653      35566666554      23 23332233457899999999877767


Q ss_pred             eeCCCeEEEEeCCC
Q 046899          307 SAEDGILNIWDHEK  320 (407)
Q Consensus       307 ~~~d~~i~vwd~~~  320 (407)
                      .+.++.|.+||+..
T Consensus       200 ~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          200 ETTANRLHRIALED  213 (333)
T ss_dssp             EGGGTEEEEEEECT
T ss_pred             eCCCCeEEEEEecC
Confidence            77789999999964

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.48  E-value=2.7e-13  Score=123.80  Aligned_cols=177  Identities=6%  Similarity=0.011  Sum_probs=115.3

Q ss_pred             CCCCCCCC-CcCceeeEee-cccCEEEEEECCCCCc--EEEEEe-------------CCCcEEEEEcCC-CCCCceeeec
Q 046899          175 GDKPLESP-SIGARGKYLG-HEDTVEDVQFCPSSAQ--EFCSVG-------------DDSCLILWDARS-GSTPAVKVEK  236 (407)
Q Consensus       175 ~i~i~d~~-~~~~~~~~~~-~~~~v~~l~~~~~~~~--~l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~  236 (407)
                      .+.+|++. +++....... ..+...+++|+|++ +  +++++.             .++.+.+|++.. ++  ......
T Consensus        61 ~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~  137 (365)
T 1jof_A           61 KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQ  137 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEE
T ss_pred             eEEEEEECCCCCEEEeeEeecCCCCccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--CcceEe
Confidence            67777765 5544332221 11235568999999 5  344543             689999999974 44  222222


Q ss_pred             ----ccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCC-CCCCCCCCCc--eeeec--CCCCCEEEEEEcCCCCCEEEE
Q 046899          237 ----AHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRR-KLTSDGVGSP--IHKFE--GHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       237 ----~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~-~~~~~~~~~~--~~~~~--~h~~~v~~v~~~~~~~~ll~s  306 (407)
                          .+...+.+++|+| +++++++++. ++.|++||+. +      ++.  +..+.  .|...+..++|+|+|++++++
T Consensus       138 ~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~------g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~  210 (365)
T 1jof_A          138 NYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLAS------GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL  210 (365)
T ss_dssp             EEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTT------SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             eEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCC------CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE
Confidence                2456789999999 8888877654 6799999998 4      443  33343  245679999999999988655


Q ss_pred             eeCCCeEEEEeCC--CCCcc------ccccc----CCC------cccCCC-CcCcchhccccceeeeeEeeCccceeeeE
Q 046899          307 SAEDGILNIWDHE--KIGEK------QDYGE----LKY------PIIHPA-YSSDMLDIETKLLTSIGMHLIHGRLLVCL  367 (407)
Q Consensus       307 ~~~d~~i~vwd~~--~~~~~------~~~~~----~~~------~v~~~~-~s~d~~~~~~~~~~~~~~~~~~~~~i~~~  367 (407)
                      ...++.|.+|++.  +++..      ..++.    +..      .+.+++ ||||                  +..|++.
T Consensus       211 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd------------------G~~l~v~  272 (365)
T 1jof_A          211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS------------------GKYMFAS  272 (365)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT------------------SSEEEEE
T ss_pred             ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC------------------CCEEEEE
Confidence            5568999999875  33321      12221    111      345666 7777                  7777665


Q ss_pred             EEee------eEEEeecc
Q 046899          368 TMVK------VLEIWRMI  379 (407)
Q Consensus       368 ~~d~------~i~iwd~~  379 (407)
                      ..+.      +|++|++.
T Consensus       273 ~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          273 SRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEESSTTSCCEEEEEEEC
T ss_pred             CCCCCCCCCCeEEEEEEC
Confidence            5443      89999996

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.46  E-value=1.8e-12  Score=114.51  Aligned_cols=214  Identities=7%  Similarity=-0.037  Sum_probs=142.5

Q ss_pred             eCCCceEEEEEeCCCCe-EEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899           81 IHPGEVNRIRELPQNSK-IVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA  159 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~-~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  159 (407)
                      .+.....+++|.| +++ +++++..++.|..||..++  .                                        
T Consensus        25 ~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~----------------------------------------   61 (296)
T 3e5z_A           25 DGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--L----------------------------------------   61 (296)
T ss_dssp             CCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--E----------------------------------------
T ss_pred             cCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--e----------------------------------------
Confidence            4566788999999 555 8889988999999997643  1                                        


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-  238 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-  238 (407)
                                                  ..+..+...+.+++++|++ +++++...++.|.+||..+++  ........ 
T Consensus        62 ----------------------------~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~--~~~~~~~~~  110 (296)
T 3e5z_A           62 ----------------------------SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE--WESIADSFE  110 (296)
T ss_dssp             ----------------------------EEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC--EEEEECEET
T ss_pred             ----------------------------EEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc--EEEEeeccC
Confidence                                        1112234567899999999 777777777899999998776  22222111 


Q ss_pred             ---CcceEEEEecCCCCCEEEE----EeC-------------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899          239 ---NADIHCVDWNPHDVNLILT----GSA-------------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP  298 (407)
Q Consensus       239 ---~~~v~~l~~~~~~~~~l~t----g~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  298 (407)
                         ...++.++++| +++++++    |+.             .+.|..++..        ..+..+..+......++|+|
T Consensus       111 ~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--------g~~~~~~~~~~~~~gi~~s~  181 (296)
T 3e5z_A          111 GKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--------GTLSAPIRDRVKPNGLAFLP  181 (296)
T ss_dssp             TEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--------SCEEEEECCCSSEEEEEECT
T ss_pred             CCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC--------CCEEEeecCCCCCccEEECC
Confidence               23467899999 8888887    331             2345555543        22344455667789999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCC-CCCc---ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEE
Q 046899          299 DKSSVFGSSAEDGILNIWDHE-KIGE---KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLE  374 (407)
Q Consensus       299 ~~~~ll~s~~~d~~i~vwd~~-~~~~---~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~  374 (407)
                      +++.+ ++.+.++.|.+||+. .++.   ...+......+.+++++++                  +...++ . ++.|.
T Consensus       182 dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~------------------G~l~v~-~-~~~v~  240 (296)
T 3e5z_A          182 SGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAG------------------GLIWAS-A-GDGVH  240 (296)
T ss_dssp             TSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTT------------------SCEEEE-E-TTEEE
T ss_pred             CCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCC------------------CCEEEE-c-CCeEE
Confidence            99976 788889999999997 3322   1222222233344555444                  543333 3 78999


Q ss_pred             EeeccccccCChHHHHHHHhhcccceeEeecc
Q 046899          375 IWRMIDLIYRPEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       375 iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                      +||..       ++.+..+..+.. +.+++|+
T Consensus       241 ~~~~~-------g~~~~~~~~~~~-~~~~~f~  264 (296)
T 3e5z_A          241 VLTPD-------GDELGRVLTPQT-TSNLCFG  264 (296)
T ss_dssp             EECTT-------SCEEEEEECSSC-CCEEEEE
T ss_pred             EECCC-------CCEEEEEECCCC-ceeEEEE
Confidence            99975       445555666666 8888873

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.45  E-value=8e-13  Score=118.79  Aligned_cols=209  Identities=8%  Similarity=0.021  Sum_probs=145.7

Q ss_pred             CCCCCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee---------cccCcc
Q 046899          172 GGNGDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE---------KAHNAD  241 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~  241 (407)
                      .++.+.+||..+++.+..+. ++-.....++++|++ +++++...++.|++||...... ....+         ..+...
T Consensus        67 ~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~  144 (329)
T 3fvz_A           67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQ  144 (329)
T ss_dssp             CSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSS
T ss_pred             cCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCC
Confidence            45678889988888765553 334578999999999 7888888899999999864421 12222         234446


Q ss_pred             eEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCCceeeecCC----------CCCEEEEEEcCCCCCEEEEeeCC
Q 046899          242 IHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTSDGVGSPIHKFEGH----------SAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~h----------~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                      ...++++|.+++++++.+ .++.|++||..       +..+..+...          -.....|+++|++..|+++...+
T Consensus       145 P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          145 PTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             EEEEEECTTTCCEEEEECSSCCEEEEECTT-------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             CcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence            889999985677777776 68999999943       5667666422          23489999999955588888899


Q ss_pred             CeEEEEeCCCCCcccccc--cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHH
Q 046899          311 GILNIWDHEKIGEKQDYG--ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEE  388 (407)
Q Consensus       311 ~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~  388 (407)
                      +.|++||..+++.+..+.  .+...+.+++|+|.            ......+...++...+.+|++|+..      +++
T Consensus       218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg------------~~~~~~g~~~v~~~~~~~v~~~~~~------~g~  279 (329)
T 3fvz_A          218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPG------------FLFAVNGKPYFGDQEPVQGFVMNFS------SGE  279 (329)
T ss_dssp             TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETT------------EEEEEECCCCTTCSCCCCEEEEETT------TCC
T ss_pred             CEEEEEECCCCcEEEEEeccccCCCcceeeecCC------------EEEEeCCCEEeccCCCcEEEEEEcC------CCe
Confidence            999999998777776653  33444555666553            1111123344455566699999987      555


Q ss_pred             HHHHH---hhcccceeEeeccC
Q 046899          389 VLAEL---DKFKSHIFGCDKSC  407 (407)
Q Consensus       389 ~~~~~---~~h~~~v~~~~~s~  407 (407)
                      .+..+   .++...+.+|++++
T Consensus       280 ~~~~~~~~~~~~~~p~~ia~~~  301 (329)
T 3fvz_A          280 IIDVFKPVRKHFDMPHDIVASE  301 (329)
T ss_dssp             EEEEECCSSSCCSSEEEEEECT
T ss_pred             EEEEEcCCCCccCCeeEEEECC
Confidence            55554   36667788888864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.45  E-value=3.1e-11  Score=105.95  Aligned_cols=199  Identities=15%  Similarity=0.147  Sum_probs=130.7

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeC-CCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTD-SPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      |...+..+++.+.+++++++... ++.|.+||. ++.....+......                      .+..+.+.+.
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~----------------------~~~~i~~~~~  131 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQ----------------------HPRGVTVDNK  131 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCS----------------------CEEEEEECTT
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEecCccCC----------------------CceEEEEeCC
Confidence            44578999986447887777743 789999994 34333222110000                      0001111111


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                      |   ..+++...++.+.+|+.. ++.+..+.  .+...+..|+++|++ +++++...++.|++||.. +.  ....+..+
T Consensus       132 g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~  203 (286)
T 1q7f_A          132 G---RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE-GQ--YLRQIGGE  203 (286)
T ss_dssp             S---CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETT-CC--EEEEESCT
T ss_pred             C---CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCC-CC--EEEEEccC
Confidence            1   223344456677778743 44455543  344578999999998 788888889999999974 33  34444332


Q ss_pred             --CcceEEEEecCCCCCEEEEEeCCC-cEEEEeCCCCCCCCCCCceeeecCCC--CCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          239 --NADIHCVDWNPHDVNLILTGSADN-SIHMFDRRKLTSDGVGSPIHKFEGHS--AAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       239 --~~~v~~l~~~~~~~~~l~tg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                        ...+..+++++ +++++++...++ .|.+||..       ++.+..+..+.  ..+.+++++|+|. ++++ +.|+.|
T Consensus       204 g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v  273 (286)
T 1q7f_A          204 GITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-------GQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRL  273 (286)
T ss_dssp             TTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-------SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEE
T ss_pred             CccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-------CCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeE
Confidence              35788999999 888888887776 99999964       46666665543  3478999999997 6656 569999


Q ss_pred             EEEeCCCC
Q 046899          314 NIWDHEKI  321 (407)
Q Consensus       314 ~vwd~~~~  321 (407)
                      ++|++...
T Consensus       274 ~v~~~~~~  281 (286)
T 1q7f_A          274 YIYRYVQL  281 (286)
T ss_dssp             EEEECSCC
T ss_pred             EEEEcccc
Confidence            99998653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.44  E-value=4.6e-12  Score=125.68  Aligned_cols=249  Identities=10%  Similarity=-0.073  Sum_probs=144.1

Q ss_pred             eCCCceEEEEEeCCCCeEEE-----EeeCCCcEEEEeCcCCCCc-ccccCcCC-CCC--CCCCcEEEEeccccccccccC
Q 046899           81 IHPGEVNRIRELPQNSKIVA-----THTDSPDVLIWDVEAQPNR-HAVLGAAD-SHP--DLDQSVVLWSIQDHVSALAAE  151 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~-----tg~~dg~i~vwd~~~~~~~-~~~~~~~~-~~~--~~d~~i~~w~~~~~~~~~~~~  151 (407)
                      +|...+..++|+| +|++||     .|+.+.+|++||+.+++.+ ........ ...  ..|+...++......      
T Consensus       118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~------  190 (695)
T 2bkl_A          118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTD------  190 (695)
T ss_dssp             SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCC------
T ss_pred             CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCC------
Confidence            3556799999999 888888     5555678999999988754 21111110 000  002222222111000      


Q ss_pred             CCCCcccccCCCCCccccccCCCCCCCCCCCCcCce--eeE--eecccCEEEEEECCCCCcEEEEEeCCC----cEEEEE
Q 046899          152 PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR--GKY--LGHEDTVEDVQFCPSSAQEFCSVGDDS----CLILWD  223 (407)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~--~~~~~~v~~l~~~~~~~~~l~s~~~dg----~i~iwd  223 (407)
                        .     .+.    .........+.+|++.++...  ..+  ..+...+..+.|+|+| ++|+.++.++    .|.++|
T Consensus       191 --~-----~~~----~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~  258 (695)
T 2bkl_A          191 --P-----SIK----VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKR  258 (695)
T ss_dssp             --T-----TSC----GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEEC
T ss_pred             --C-----CCc----cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEc
Confidence              0     000    000011233677777766522  222  2345678999999999 5565555444    566666


Q ss_pred             cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe---CCCcEEEEeCCCCCCCCCCCc--eeeecCC--CCCEEEEEE
Q 046899          224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS---ADNSIHMFDRRKLTSDGVGSP--IHKFEGH--SAAVLCVQW  296 (407)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~---~dg~i~vwd~~~~~~~~~~~~--~~~~~~h--~~~v~~v~~  296 (407)
                      ..++.   ...+..+...+....+ + ++.+++...   .++.|.+||+..      +..  ...+..+  ...+..++|
T Consensus       259 ~~~~~---~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~l~~~~~  327 (695)
T 2bkl_A          259 PGEKD---FRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAK------PARASWKEIVPEDSSASLLSVSI  327 (695)
T ss_dssp             TTCSS---CEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTB------CSGGGCEEEECCCSSCEEEEEEE
T ss_pred             CCCCc---eEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCC------CCccCCeEEecCCCCCeEEEEEE
Confidence            54443   3344455555666666 4 444555544   257899999977      432  2344333  456888999


Q ss_pred             cCCCCCEEEEeeCCCeEEEEeCC-CCCcccccccC-CCcccCCCCcCcchhccccceeeeeEeeCccceee----eEEEe
Q 046899          297 SPDKSSVFGSSAEDGILNIWDHE-KIGEKQDYGEL-KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV----CLTMV  370 (407)
Q Consensus       297 ~~~~~~ll~s~~~d~~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~----~~~~d  370 (407)
                      + ++ +++++...|+..+||.+. .++....+..+ ...+..+++++|                  +..++    +....
T Consensus       328 ~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d------------------~~~l~~~~ss~~~P  387 (695)
T 2bkl_A          328 V-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLED------------------LDDAYYVFTSFTTP  387 (695)
T ss_dssp             E-TT-EEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTT------------------CSEEEEEEEETTEE
T ss_pred             E-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCC------------------CCEEEEEEcCCCCC
Confidence            8 44 477899999998888665 34444444433 556777888877                  44444    33345


Q ss_pred             eeEEEeecc
Q 046899          371 KVLEIWRMI  379 (407)
Q Consensus       371 ~~i~iwd~~  379 (407)
                      ++|++||+.
T Consensus       388 ~~v~~~d~~  396 (695)
T 2bkl_A          388 RQIYKTSVS  396 (695)
T ss_dssp             EEEEEEETT
T ss_pred             CEEEEEECC
Confidence            699999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.43  E-value=1.7e-12  Score=129.16  Aligned_cols=183  Identities=9%  Similarity=-0.040  Sum_probs=114.5

Q ss_pred             EEEEEECCCCCcEEEEEeCCCc----------------EEEEEcCCCCCCcee--eecccCcceEEEEecCCCCCEEEEE
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSC----------------LILWDARSGSTPAVK--VEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                      +..++|+|++ +.|+.++.++.                |++|++.+++.....  ....+...+..+.|+| ++++|+.+
T Consensus       173 ~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~  250 (710)
T 2xdw_A          173 FSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLS  250 (710)
T ss_dssp             SCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEE
T ss_pred             cceEEEEeCC-CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEE
Confidence            5678999999 67777777655                999999876522122  2223556678999999 88888877


Q ss_pred             eC-----CCcEEEEeCCCCCC--CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC---CeEEEEeCCCCCc--ccc
Q 046899          259 SA-----DNSIHMFDRRKLTS--DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED---GILNIWDHEKIGE--KQD  326 (407)
Q Consensus       259 ~~-----dg~i~vwd~~~~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~--~~~  326 (407)
                      +.     +..|.+||+.....  .+ ......+..+...+.. .|+|+|..+++.+..+   +.|.+||+.+++.  .+.
T Consensus       251 ~~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~  328 (710)
T 2xdw_A          251 IREGCDPVNRLWYCDLQQESNGITG-ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV  328 (710)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCS-SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred             EEccCCCccEEEEEECcccccccCC-ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence            64     56899999874100  00 1245566666666655 4888998776555433   3799999987642  233


Q ss_pred             cccCCC--cccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee--eEEEeeccccccCChHHHHHHHhhcccceeE
Q 046899          327 YGELKY--PIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK--VLEIWRMIDLIYRPEEEVLAELDKFKSHIFG  402 (407)
Q Consensus       327 ~~~~~~--~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  402 (407)
                      +..+..  .+..+.++                  ..+..+++...++  .|++|++.      +++.+..+..+.+.|..
T Consensus       329 l~~~~~~~~~~~~~~~------------------~~~~lv~~~~~~g~~~l~~~~~~------~g~~~~~l~~~~~~v~~  384 (710)
T 2xdw_A          329 LVPEHEKDVLEWVACV------------------RSNFLVLCYLHDVKNTLQLHDLA------TGALLKIFPLEVGSVVG  384 (710)
T ss_dssp             EECCCSSCEEEEEEEE------------------TTTEEEEEEEETTEEEEEEEETT------TCCEEEEECCCSSEEEE
T ss_pred             ccCCCCCCeEEEEEEE------------------cCCEEEEEEEECCEEEEEEEECC------CCCEEEecCCCCceEEE
Confidence            333222  23233332                  2255677777777  56666764      34444455666777777


Q ss_pred             eeccC
Q 046899          403 CDKSC  407 (407)
Q Consensus       403 ~~~s~  407 (407)
                      +++++
T Consensus       385 ~~~s~  389 (710)
T 2xdw_A          385 YSGQK  389 (710)
T ss_dssp             EECCT
T ss_pred             EecCC
Confidence            77763

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.42  E-value=1e-11  Score=114.11  Aligned_cols=248  Identities=10%  Similarity=-0.021  Sum_probs=141.8

Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcc
Q 046899           88 RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKN  167 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (407)
                      .+.|+| +++.|+.++.++.|.+||+.+++.......+....+  ++...++.........  ......+.+.+   ..+
T Consensus        85 ~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~--~g~~l~~~~~~~~~~~--~~~~~~~spdg---~~~  156 (396)
T 3c5m_A           85 GGFIST-DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKG--YGTWVANSDCTKLVGI--EILKRDWQPLT---SWE  156 (396)
T ss_dssp             TCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEE--EEEEEECTTSSEEEEE--EEEGGGCCCCC---SHH
T ss_pred             cceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCC--CCCEEEeccCCccccc--cccccccCCCC---cce
Confidence            377899 888999998888999999988764433322211100  1111110000000000  00000111111   112


Q ss_pred             ccc-----cCCCCCCCCCCCCcCceeeEeecccCEEEEEECC-CCCcEEEEEeCC------CcEEEEEcCCCCCCceeee
Q 046899          168 ASK-----SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP-SSAQEFCSVGDD------SCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       168 ~~~-----~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~  235 (407)
                      +..     ..+..+.+||+.+++..... .+...+..+.|+| ++ ..|+..+.+      ..|.+||+..+.   ...+
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l  231 (396)
T 3c5m_A          157 KFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN---VRKI  231 (396)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC---CEES
T ss_pred             eeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc---eeEe
Confidence            211     34556778888877654444 5677899999999 67 555555543      468888987655   2222


Q ss_pred             ccc--CcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC-CCCCEEEEe
Q 046899          236 KAH--NADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP-DKSSVFGSS  307 (407)
Q Consensus       236 ~~~--~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ll~s~  307 (407)
                      ..+  ...+..+.|+| +++.|+.++.+     +.|++||+.+      ++...... .. ... +.|+| +|+.+ +++
T Consensus       232 ~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~------g~~~~l~~-~~-~~~-~~~s~~dg~~l-~~~  300 (396)
T 3c5m_A          232 KEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPET------LENEEVMV-MP-PCS-HLMSNFDGSLM-VGD  300 (396)
T ss_dssp             SCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTT------CCEEEEEE-CC-SEE-EEEECSSSSEE-EEE
T ss_pred             eccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCC------CCeEEeee-CC-CCC-CCccCCCCceE-EEe
Confidence            223  23578899999 88877666543     4499999987      44332221 11 233 89999 99955 454


Q ss_pred             e----------------CCCeEEEEeCCCCCcccccccCCC-----------cccCCCCcCcchhccccceeeeeEeeCc
Q 046899          308 A----------------EDGILNIWDHEKIGEKQDYGELKY-----------PIIHPAYSSDMLDIETKLLTSIGMHLIH  360 (407)
Q Consensus       308 ~----------------~d~~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~s~d~~~~~~~~~~~~~~~~~~  360 (407)
                      +                .+..|.+||+.+++. ..+..+..           .+..+.|+||                  
T Consensus       301 ~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~d------------------  361 (396)
T 3c5m_A          301 GCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPN------------------  361 (396)
T ss_dssp             ECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTT------------------
T ss_pred             cCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccC------------------
Confidence            3                347899999987553 33433333           2456778777                  


Q ss_pred             cceeeeEEE-eeeEEEeec
Q 046899          361 GRLLVCLTM-VKVLEIWRM  378 (407)
Q Consensus       361 ~~~i~~~~~-d~~i~iwd~  378 (407)
                      +..|+..+. ++...||.+
T Consensus       362 g~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          362 DDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             SSEEEEEECTTSSCEEEEE
T ss_pred             CCeEEEEecCCCCceEEEE
Confidence            666665554 445555554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.41  E-value=1.9e-13  Score=125.84  Aligned_cols=202  Identities=12%  Similarity=0.052  Sum_probs=116.8

Q ss_pred             CceEEEEEeCCCCeEEEEeeCC---CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           84 GEVNRIRELPQNSKIVATHTDS---PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      ..+..++|+| ++++|+.....   ..|.+||+.+++.............     ...|                  .+.
T Consensus        36 ~~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~-----~~~~------------------spd   91 (396)
T 3c5m_A           36 NYFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTF-----GGFI------------------STD   91 (396)
T ss_dssp             CCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTT-----TCEE------------------CTT
T ss_pred             eeeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccc-----cceE------------------CCC
Confidence            3477888999 77777666442   3677888876643322111110000     0011                  111


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEE-------------------EEECCCCCcEEEEE-----eCC
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVED-------------------VQFCPSSAQEFCSV-----GDD  216 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~-------------------l~~~~~~~~~l~s~-----~~d  216 (407)
                      |   ..++..+.++.+.+||...++.......+......                   +.|+|++ ..++.+     ..+
T Consensus        92 g---~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~  167 (396)
T 3c5m_A           92 E---RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPT  167 (396)
T ss_dssp             S---SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCC
T ss_pred             C---CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCc
Confidence            1   22334444455677777666654444433332222                   3567777 444433     456


Q ss_pred             CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCCceeeecCC--C
Q 046899          217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD------NSIHMFDRRKLTSDGVGSPIHKFEGH--S  288 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~h--~  288 (407)
                      ..|.+||+.+++  .. .+..+...+..+.|+|.++..|+..+.+      ..|.+||+..      .+ ...+..+  .
T Consensus       168 ~~l~~~d~~~g~--~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~------~~-~~~l~~~~~~  237 (396)
T 3c5m_A          168 CRLIKVDIETGE--LE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG------SN-VRKIKEHAEG  237 (396)
T ss_dssp             EEEEEEETTTCC--EE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS------CC-CEESSCCCTT
T ss_pred             ceEEEEECCCCc--EE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC------Cc-eeEeeccCCC
Confidence            789999998876  22 3335677889999999445655554433      3688888865      33 3333333  2


Q ss_pred             CCEEEEEEcCCCCCEEEEeeCC----CeEEEEeCCCCCc
Q 046899          289 AAVLCVQWSPDKSSVFGSSAED----GILNIWDHEKIGE  323 (407)
Q Consensus       289 ~~v~~v~~~~~~~~ll~s~~~d----~~i~vwd~~~~~~  323 (407)
                      ..+..++|+|+|++|+..+..+    +.|.+||+.+++.
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            3588899999999875443322    4599999987654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.39  E-value=6.4e-12  Score=114.31  Aligned_cols=128  Identities=8%  Similarity=0.039  Sum_probs=88.5

Q ss_pred             CCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc------c----CcceEEEEecCCCCCEEEEEeC-----------C
Q 046899          203 CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA------H----NADIHCVDWNPHDVNLILTGSA-----------D  261 (407)
Q Consensus       203 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~----~~~v~~l~~~~~~~~~l~tg~~-----------d  261 (407)
                      .|++ ..++..+.++.|.++|+.............      +    ......++++| +++.++++..           .
T Consensus       208 ~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~  285 (361)
T 2oiz_A          208 ALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPA  285 (361)
T ss_dssp             EECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCC
T ss_pred             cccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCC
Confidence            4555 455666788999999987654211111110      0    11112378899 7666665532           3


Q ss_pred             CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC--CcccccccCCCcccCCCC
Q 046899          262 NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI--GEKQDYGELKYPIIHPAY  339 (407)
Q Consensus       262 g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~  339 (407)
                      +.|.+||+.+      .+.+.++..+.  +.+++|+|+|++|+ +++. ++|.+||+.++  +.+.++.........+++
T Consensus       286 ~~v~viD~~t------~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          286 AEIWVMDTKT------KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             SEEEEEETTT------TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred             ceEEEEECCC------CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence            4899999999      88999998876  89999999999776 5554 99999999998  877776555554456666


Q ss_pred             cCc
Q 046899          340 SSD  342 (407)
Q Consensus       340 s~d  342 (407)
                      +||
T Consensus       356 ~p~  358 (361)
T 2oiz_A          356 HPV  358 (361)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            665

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.39  E-value=1e-11  Score=112.20  Aligned_cols=163  Identities=13%  Similarity=0.198  Sum_probs=101.2

Q ss_pred             EEEEEECCCCCcEEEEEeC---------------------------CCcEEEEEcCCCCCCceeeecccCcceEEEEecC
Q 046899          197 VEDVQFCPSSAQEFCSVGD---------------------------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP  249 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~  249 (407)
                      +..++|+|++ +.|+.++.                           ...|.+||+.+++  ....+.. . .+..+.|+|
T Consensus       106 ~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~-~~~~~~~sp  180 (347)
T 2gop_A          106 IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P-RFSSGIWHR  180 (347)
T ss_dssp             EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E-TTCEEEEET
T ss_pred             ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C-CcccccCCC
Confidence            8899999999 55665542                           2579999998776  3133333 3 788999999


Q ss_pred             CCCCEEEEEeCCC-------cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--------CeEE
Q 046899          250 HDVNLILTGSADN-------SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GILN  314 (407)
Q Consensus       250 ~~~~~l~tg~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--------~~i~  314 (407)
                       ++ +++++..++       ...+|.+..      ++. ..+..+ ..+..+  +|+|++|+ .++.+        ..|.
T Consensus       181 -dg-~~~~~~~~~~~~~~~~~~~l~~~d~------~~~-~~l~~~-~~~~~~--spdg~~l~-~~~~~~~~~~~~~~~l~  247 (347)
T 2gop_A          181 -DK-IVVNVPHREIIPQYFKFWDIYIWED------GKE-EKMFEK-VSFYAV--DSDGERIL-LYGKPEKKYMSEHNKLY  247 (347)
T ss_dssp             -TE-EEEEEECCCSSCCSSCCEEEEEEET------TEE-EEEEEE-ESEEEE--EECSSCEE-EEECCSSSCCCSSCEEE
T ss_pred             -Ce-EEEEEecccccccccccccEEEeCC------Cce-EEeccC-cceeeE--CCCCCEEE-EEEccccCCccccceEE
Confidence             88 777776542       334444433      443 333334 455554  99999875 44433        4788


Q ss_pred             EEeCCCCCcccccccCCCcccC-CCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899          315 IWDHEKIGEKQDYGELKYPIIH-PAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAEL  393 (407)
Q Consensus       315 vwd~~~~~~~~~~~~~~~~v~~-~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  393 (407)
                      +||  +++.......+...+.. +.|+ |                  + .+++++.++.++|| +.      +++. ..+
T Consensus       248 ~~d--~~~~~~l~~~~~~~~~~~~~~s-d------------------g-~~~~~~~~~~~~l~-~~------~g~~-~~~  297 (347)
T 2gop_A          248 IYD--GKEVMGILDEVDRGVGQAKIKD-G------------------K-VYFTLFEEGSVNLY-IW------DGEI-KPI  297 (347)
T ss_dssp             EEC--SSCEEESSTTCCSEEEEEEEET-T------------------E-EEEEEEETTEEEEE-EE------SSSE-EEE
T ss_pred             EEC--CCceEeccccCCcccCCccEEc-C------------------c-EEEEEecCCcEEEE-Ec------CCce-EEE
Confidence            888  43333333334444443 4443 3                  5 77788899999999 86      2222 223


Q ss_pred             hhcccceeEeeccC
Q 046899          394 DKFKSHIFGCDKSC  407 (407)
Q Consensus       394 ~~h~~~v~~~~~s~  407 (407)
                      ..+.+.|.+++||+
T Consensus       298 ~~~~~~v~~~~~s~  311 (347)
T 2gop_A          298 AKGRHWIMGFDVDE  311 (347)
T ss_dssp             ECSSSEEEEEEESS
T ss_pred             ecCCCeEEeeeeeC
Confidence            34567788888874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.39  E-value=4.9e-12  Score=124.82  Aligned_cols=128  Identities=15%  Similarity=0.121  Sum_probs=85.1

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCC--------CcEEEEEcC-CCCC-CceeeecccCcceEEEEecCCCCCEEEEEeCCC-
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDD--------SCLILWDAR-SGST-PAVKVEKAHNADIHCVDWNPHDVNLILTGSADN-  262 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg-  262 (407)
                      ...+..++|+|+| +.|+.++.+        ..|.+||+. ++.. ........+...+..+.|+| +++++++++.++ 
T Consensus       187 ~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~  264 (662)
T 3azo_A          187 HRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGW  264 (662)
T ss_dssp             SSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSS
T ss_pred             CCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCC
Confidence            3456778999999 677766644        479999998 4521 12333344578899999999 888888888888 


Q ss_pred             -cEEEEeCCCCCCCCCCCceeeecCCCCC--------EEEEEEcCCCCCEEEEeeCCCeEEEE--eCCCCCcccccccCC
Q 046899          263 -SIHMFDRRKLTSDGVGSPIHKFEGHSAA--------VLCVQWSPDKSSVFGSSAEDGILNIW--DHEKIGEKQDYGELK  331 (407)
Q Consensus       263 -~i~vwd~~~~~~~~~~~~~~~~~~h~~~--------v~~v~~~~~~~~ll~s~~~d~~i~vw--d~~~~~~~~~~~~~~  331 (407)
                       .|.+||+..      ++.......+...        +..++|+|++. ++++++. +.++||  |+..+ .+..+..+.
T Consensus       265 ~~l~~~~~~~------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~-~~~~l~~~~  335 (662)
T 3azo_A          265 WNLHRVDPAT------GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPESG-ELVDAAGPW  335 (662)
T ss_dssp             CEEEEECTTT------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTTT-EEEECCSSC
T ss_pred             eEEEEEECCC------CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCCC-cEEEecCCC
Confidence             566666644      4433333322221        56789999988 5568887 999999  55543 355554444


Q ss_pred             C
Q 046899          332 Y  332 (407)
Q Consensus       332 ~  332 (407)
                      .
T Consensus       336 ~  336 (662)
T 3azo_A          336 T  336 (662)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.38  E-value=4.1e-11  Score=105.79  Aligned_cols=181  Identities=9%  Similarity=0.044  Sum_probs=121.0

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTAS  160 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  160 (407)
                      .+...+.++++.| +++++++...++.|.+||..+++........                                   
T Consensus        66 ~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-----------------------------------  109 (296)
T 3e5z_A           66 HPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSF-----------------------------------  109 (296)
T ss_dssp             SSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEE-----------------------------------
T ss_pred             CCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeecc-----------------------------------
Confidence            4677899999998 8888888777789999998655321110000                                   


Q ss_pred             CCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC-----------------CCcEEEEE
Q 046899          161 GGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-----------------DSCLILWD  223 (407)
Q Consensus       161 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-----------------dg~i~iwd  223 (407)
                                                 .  ......+..++++|+| +++++.+.                 .+.|..+|
T Consensus       110 ---------------------------~--~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~  159 (296)
T 3e5z_A          110 ---------------------------E--GKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA  159 (296)
T ss_dssp             ---------------------------T--TEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred             ---------------------------C--CCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEEC
Confidence                                       0  0012345678999999 77776321                 23555555


Q ss_pred             cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCc---eeeecCCCCCEEEEEEcCCC
Q 046899          224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSP---IHKFEGHSAAVLCVQWSPDK  300 (407)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~---~~~~~~h~~~v~~v~~~~~~  300 (407)
                      .. ++   ......+......++|+| +++.+++.+.++.|.+||+...     +..   ...+..+...+.+++++++|
T Consensus       160 ~~-g~---~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~-----g~~~~~~~~~~~~~~~p~~i~~d~~G  229 (296)
T 3e5z_A          160 PD-GT---LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNAR-----GETEYQGVHFTVEPGKTDGLRVDAGG  229 (296)
T ss_dssp             TT-SC---EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSS-----SCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred             CC-CC---EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCC-----CcCcCCCeEeeCCCCCCCeEEECCCC
Confidence            44 33   334445666778999999 8888877778899999999731     333   23333355667889999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCC-cCc
Q 046899          301 SSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAY-SSD  342 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-s~d  342 (407)
                      . |+++.  ++.|.+||.. ++.+..+..+.. +++++| +++
T Consensus       230 ~-l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d  267 (296)
T 3e5z_A          230 L-IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPE  267 (296)
T ss_dssp             C-EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTT
T ss_pred             C-EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCC
Confidence            8 55444  7899999987 566666665555 666777 344

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.35  E-value=1.3e-10  Score=111.29  Aligned_cols=274  Identities=9%  Similarity=0.016  Sum_probs=167.5

Q ss_pred             cccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc--CCCCcccccCcC
Q 046899           49 EQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE--AQPNRHAVLGAA  126 (407)
Q Consensus        49 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~--~~~~~~~~~~~~  126 (407)
                      ++...++.+.++         +....+....+.....+..+.|+| +++++++++.|+.|.+||+.  +.+....+....
T Consensus       171 V~~~~~~~V~vi---------D~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~  240 (567)
T 1qks_A          171 VTLRDAGQIALI---------DGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  240 (567)
T ss_dssp             EEETTTTEEEEE---------ETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             EEeCCCCeEEEE---------ECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC
Confidence            344455566666         122233444555666788999999 88889999999999999995  544333332111


Q ss_pred             CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec-----------cc
Q 046899          127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH-----------ED  195 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-----------~~  195 (407)
                                       ....+.+++-.   .+.|+.  .+++...++.+.++|..+.+.+..+.-.           ..
T Consensus       241 -----------------~P~~ia~s~~~---~pDGk~--l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~  298 (567)
T 1qks_A          241 -----------------EARSIETSKME---GWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP  298 (567)
T ss_dssp             -----------------EEEEEEECCST---TCTTTE--EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred             -----------------CCceeEEcccc---CCCCCE--EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence                             01111111000   001111  1223344567778888888877766421           22


Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTS  274 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~  274 (407)
                      .+..+..+++++.++++...+|.|.++|...........+ ........+.|+| ++++++++. .++.|.++|+.+   
T Consensus       299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t---  373 (567)
T 1qks_A          299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE---  373 (567)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT---
T ss_pred             ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCC---
Confidence            6788999998867777777889999999987652222222 3445667889999 888776654 578999999998   


Q ss_pred             CCCCCceeeecC-----CCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCC-------CCcccccccCCCcccCCCCcC
Q 046899          275 DGVGSPIHKFEG-----HSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEK-------IGEKQDYGELKYPIIHPAYSS  341 (407)
Q Consensus       275 ~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~s~  341 (407)
                         ++.+..+..     |.+.-..+ ++|++..+++++. .+++|.++|..+       .+.++++......-..+..+|
T Consensus       374 ---~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p  449 (567)
T 1qks_A          374 ---GKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP  449 (567)
T ss_dssp             ---TEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred             ---CcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC
Confidence               776666543     32222222 6888666776664 468999999987       455565554332212233455


Q ss_pred             cchhccccceeeeeEeeCccceeeeEEE-------eeeEEEeecccc
Q 046899          342 DMLDIETKLLTSIGMHLIHGRLLVCLTM-------VKVLEIWRMIDL  381 (407)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~i~~~~~-------d~~i~iwd~~~~  381 (407)
                      |                  +.++..-..       ..+|.|+|+.+.
T Consensus       450 ~------------------~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          450 N------------------SQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             T------------------CSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             C------------------CCeEEEecCCCCCcccCceEEEEECCcc
Confidence            5                  444443221       348999999853

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.33  E-value=7.1e-11  Score=105.94  Aligned_cols=219  Identities=9%  Similarity=-0.058  Sum_probs=143.3

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      ....+........+++++ +++++++...++.|.+||..+.+....+........                  ...+..+
T Consensus        76 ~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~------------------~~~p~~i  136 (328)
T 3dsm_A           76 EVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDME------------------SGSTEQM  136 (328)
T ss_dssp             EEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT------------------TCBCCCE
T ss_pred             EEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc------------------CCCcceE
Confidence            434445667899999988 667766665889999999987765443322110000                  0001111


Q ss_pred             cccccCCCCCcccccc-CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC----------CcEEEEEc
Q 046899          156 KSTASGGANSKNASKS-GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD----------SCLILWDA  224 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d----------g~i~iwd~  224 (407)
                      .+ ..+   ...++.. .++.+.++|..+++.+..+... .....++++|+| ++++++..+          +.|.++|.
T Consensus       137 ~~-~~~---~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~  210 (328)
T 3dsm_A          137 VQ-YGK---YVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDA  210 (328)
T ss_dssp             EE-ETT---EEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred             EE-ECC---EEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEEC
Confidence            11 001   1122222 3678888999888877776543 345688999998 667666554          78999999


Q ss_pred             CCCCCCceeeeccc-CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee--eecCCCCCEEEEEEcCCCC
Q 046899          225 RSGSTPAVKVEKAH-NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH--KFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       225 ~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~  301 (407)
                      .+++  ....+... ......++++| +++.++++..  .|.+||..+      ++...  .+..+......++++|++.
T Consensus       211 ~t~~--v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t------~~~~~~~~~~~~~~~p~gi~vdp~~g  279 (328)
T 3dsm_A          211 ETFT--VEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEA------DRVPVRPFLEFRDTKYYGLTVNPNNG  279 (328)
T ss_dssp             TTTE--EEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTC------SSCCSSCSBCCCSSCEEEEEECTTTC
T ss_pred             CCCe--EEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCC------CceeeeeeecCCCCceEEEEEcCCCC
Confidence            8876  34343321 34678999999 7888877664  899999987      44321  1222245789999999766


Q ss_pred             CEEEEe----eCCCeEEEEeCCCCCcccccccCC
Q 046899          302 SVFGSS----AEDGILNIWDHEKIGEKQDYGELK  331 (407)
Q Consensus       302 ~ll~s~----~~d~~i~vwd~~~~~~~~~~~~~~  331 (407)
                      .|+++.    ..++.|.+||.. ++.+.++....
T Consensus       280 ~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~  312 (328)
T 3dsm_A          280 EVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGI  312 (328)
T ss_dssp             CEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEE
T ss_pred             eEEEEcccccccCCEEEEECCC-CCEEEEEEecc
Confidence            788787    678999999998 77777765433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.31  E-value=1.9e-11  Score=110.66  Aligned_cols=128  Identities=12%  Similarity=0.081  Sum_probs=98.7

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                      .+.. |+.++|  ++ ++|+++ .++.|++||+++..  .......|...+.++.+.+ .  .+++++.||.+.+||+..
T Consensus        86 ~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~  155 (388)
T 1xip_A           86 EIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRT  155 (388)
T ss_dssp             ECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTT
T ss_pred             eCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccC
Confidence            3556 999999  66 788888 88999999999876  3445567778888888766 2  388889999999999997


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc--cccc------c---cCCCcccCCCCc
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE--KQDY------G---ELKYPIIHPAYS  340 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--~~~~------~---~~~~~v~~~~~s  340 (407)
                            +....    +...|++++|||+|  + +.|..||++++|+....+.  ..++      .   ++...|.++.|.
T Consensus       156 ------~~~~~----~~~~Vs~v~WSpkG--~-~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl  222 (388)
T 1xip_A          156 ------KSTKQ----LAQNVTSFDVTNSQ--L-AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL  222 (388)
T ss_dssp             ------CCEEE----EEESEEEEEECSSE--E-EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES
T ss_pred             ------Ccccc----ccCCceEEEEcCCc--e-EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe
Confidence                  44432    34689999999999  4 5788999999998877553  3333      2   356778888886


Q ss_pred             Cc
Q 046899          341 SD  342 (407)
Q Consensus       341 ~d  342 (407)
                      ++
T Consensus       223 ~~  224 (388)
T 1xip_A          223 SP  224 (388)
T ss_dssp             SS
T ss_pred             cC
Confidence            65

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.29  E-value=1.3e-10  Score=104.23  Aligned_cols=235  Identities=7%  Similarity=-0.047  Sum_probs=147.9

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      .....+.+.  +++++++...++.|.+||..+++.+..+.....                        +..+.+.+.+  
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~------------------------p~~i~~~~~g--   95 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS------------------------PRYIHFLSDE--   95 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSS------------------------EEEEEEEETT--
T ss_pred             ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCC------------------------CcEEEEeCCC--
Confidence            446777764  567777777789999999998876555422110                        0001111111  


Q ss_pred             CCccccccCCCCCCCCCCCCcCceeeEeecc-----cCEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCCCceeeecc
Q 046899          164 NSKNASKSGGNGDKPLESPSIGARGKYLGHE-----DTVEDVQFCPSSAQEFCSVG-DDSCLILWDARSGSTPAVKVEKA  237 (407)
Q Consensus       164 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~  237 (407)
                       ...++...++.+.++|..+++....+....     .....+++ ..+ .++++.. .++.|.++|+.+++  ....+..
T Consensus        96 -~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~--~~~~i~~  170 (328)
T 3dsm_A           96 -KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDK--VVDELTI  170 (328)
T ss_dssp             -EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTE--EEEEEEC
T ss_pred             -eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCe--EEEEEEc
Confidence             112222246778888888887766665332     14556777 334 5555554 48999999999877  4444432


Q ss_pred             cCcceEEEEecCCCCCEEEEEeCC----------CcEEEEeCCCCCCCCCCCceeeecCC-CCCEEEEEEcCCCCCEEEE
Q 046899          238 HNADIHCVDWNPHDVNLILTGSAD----------NSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~ll~s  306 (407)
                       ......+.++| ++++++++..+          +.|.++|..+      ++....+... ......++|+|++++|+++
T Consensus       171 -g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t------~~v~~~~~~~~g~~p~~la~~~d~~~lyv~  242 (328)
T 3dsm_A          171 -GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQFKFKLGDWPSEVQLNGTRDTLYWI  242 (328)
T ss_dssp             -SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTT------TEEEEEEECCTTCCCEEEEECTTSCEEEEE
T ss_pred             -CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCC------CeEEEEEecCCCCCceeEEEecCCCEEEEE
Confidence             33456789999 88877776654          7899999988      6766666532 2367999999999988754


Q ss_pred             eeCCCeEEEEeCCCCCcccc--cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeE----EEeeeEEEeecc
Q 046899          307 SAEDGILNIWDHEKIGEKQD--YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL----TMVKVLEIWRMI  379 (407)
Q Consensus       307 ~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~----~~d~~i~iwd~~  379 (407)
                      .+   .|.+||+.+++....  +........+++++|+                 .+...++.    ..+++|.+||..
T Consensus       243 ~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~-----------------~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          243 NN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN-----------------NGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT-----------------TCCEEEEECTTSSSEEEEEEECTT
T ss_pred             cc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCC-----------------CCeEEEEcccccccCCEEEEECCC
Confidence            32   899999988665321  1111223344455543                 13334444    467899999985

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.27  E-value=2.6e-10  Score=113.33  Aligned_cols=158  Identities=5%  Similarity=-0.128  Sum_probs=101.7

Q ss_pred             cccCEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCC------CCCCceeeecccCcceEEEEecCCCCCEEEEEeCC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGD-----DSCLILWDARS------GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD  261 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d  261 (407)
                      |...+..+.|+|+| ++|+.++.     +..|.+||+.+      +.. ....+..+...+.. .|+| ++..|+..+.+
T Consensus       231 ~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~  306 (710)
T 2xdw_A          231 EPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTNR  306 (710)
T ss_dssp             CTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEECT
T ss_pred             CCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEECC
Confidence            44557889999999 55555543     56899999986      421 13444455555544 4778 66766655543


Q ss_pred             ----CcEEEEeCCCCCCCCCCC--ceeeecCCCC--CEEEEEEcCCCCCEEEEeeCCCe--EEEEeCCCCCcccccccCC
Q 046899          262 ----NSIHMFDRRKLTSDGVGS--PIHKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGI--LNIWDHEKIGEKQDYGELK  331 (407)
Q Consensus       262 ----g~i~vwd~~~~~~~~~~~--~~~~~~~h~~--~v~~v~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~  331 (407)
                          +.|.+||+..      +.  ....+..|..  .+..++|++++. ++++...|+.  |.+||+.+++.+..+..+.
T Consensus       307 ~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~  379 (710)
T 2xdw_A          307 HSPNYRLINIDFTD------PEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGALLKIFPLEV  379 (710)
T ss_dssp             TCTTCEEEEEETTS------CCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCCEEEEECCCS
T ss_pred             CCCCCEEEEEeCCC------CCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCCEEEecCCCC
Confidence                3699999987      33  2355555544  688899986655 6678888885  5667776666555555555


Q ss_pred             CcccCCCCcCcchhccccceeeeeEeeCccceeeeE----EEeeeEEEeecc
Q 046899          332 YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCL----TMVKVLEIWRMI  379 (407)
Q Consensus       332 ~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~----~~d~~i~iwd~~  379 (407)
                      ..+..+.++++                  +..++..    ...++|++||+.
T Consensus       380 ~~v~~~~~s~d------------------~~~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          380 GSVVGYSGQKK------------------DTEIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             SEEEEEECCTT------------------CSEEEEEEECSSCCCEEEEEETT
T ss_pred             ceEEEEecCCC------------------CCEEEEEEeCCCCCCEEEEEECC
Confidence            55666666665                  4433322    233589999986

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.27  E-value=6.6e-12  Score=113.70  Aligned_cols=165  Identities=12%  Similarity=0.073  Sum_probs=122.6

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---------CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS---------TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                      +++.+++++.. .++++|+.+ .+.+|++....         ..... ...+.. |+.|+|   ++++|+++ .++.|++
T Consensus        39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF---HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence            68899999988 688888887 55669876432         11111 224566 999999   67889888 8899999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhc
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDI  346 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~  346 (407)
                      ||++.      .........|+.++.++.+.+..   ++++..||.|.+||+.......    ....|++++|||+    
T Consensus       111 ~dv~s------l~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpk----  173 (388)
T 1xip_A          111 LDLEE------LSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNS----  173 (388)
T ss_dssp             EESSS------TTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSS----
T ss_pred             EEchh------hhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCC----
Confidence            99998      45555666778889998887653   4688999999999999766532    4557889999887    


Q ss_pred             cccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHH--HH------HHh---hcccceeEeeccC
Q 046899          347 ETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEV--LA------ELD---KFKSHIFGCDKSC  407 (407)
Q Consensus       347 ~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~--~~------~~~---~h~~~v~~~~~s~  407 (407)
                                    +  ++.|..||++++|+..      .+++  .+      .+.   +|...|.+|.|.+
T Consensus       174 --------------G--~~vg~~dg~i~~~~~~------~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~  223 (388)
T 1xip_A          174 --------------Q--LAVLLKDRSFQSFAWR------NGEMEKQFEFSLPSELEELPVEEYSPLSVTILS  223 (388)
T ss_dssp             --------------E--EEEEETTSCEEEEEEE------TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred             --------------c--eEEEEcCCcEEEEcCC------CccccccceecCCcccccccCCCeeEEEEEEec
Confidence                          5  6789999999999886      2221  11      223   5788899998863

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.25  E-value=2.5e-09  Score=93.99  Aligned_cols=223  Identities=8%  Similarity=-0.016  Sum_probs=137.2

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccc-cCcCCCC------CCC--------CCcEEEEeccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAV-LGAADSH------PDL--------DQSVVLWSIQDHV  145 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-~~~~~~~------~~~--------d~~i~~w~~~~~~  145 (407)
                      .+...+.++++.+ +++++++...++.|.+||.. +...... .......      ++.        ++.+..|+.....
T Consensus        12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~   89 (299)
T 2z2n_A           12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGII   89 (299)
T ss_dssp             SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE
Confidence            3557899999888 78877777667899999987 4322111 1000000      110        3456666655322


Q ss_pred             cccccC--CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899          146 SALAAE--PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW  222 (407)
Q Consensus       146 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  222 (407)
                      ..+...  ......+.........++...++.+..+|. .++.... .......+..+++.+++ .++++...++.|..|
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRI  167 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEE
Confidence            222111  111111222222233444445667777777 4433222 12234578999999998 777777777899999


Q ss_pred             EcCCCCCCceee-ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCC
Q 046899          223 DARSGSTPAVKV-EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDK  300 (407)
Q Consensus       223 d~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~  300 (407)
                      |. +++  .... .......+.++++++ ++++.++...++.|.+||. .      ++... .+..+...+.+++++++|
T Consensus       168 ~~-~g~--~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          168 TE-SGD--ITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-S------GEITEFKIPTPNARPHAITAGAGI  236 (299)
T ss_dssp             CT-TCC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEEEEEECSTT
T ss_pred             cC-CCc--EEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-C------CcEEEEECCCCCCCceeEEECCCC
Confidence            98 555  2222 233445688999999 7887777667889999998 5      44322 233355679999999998


Q ss_pred             CCEEEEeeCCCeEEEEeCC
Q 046899          301 SSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~  319 (407)
                      . ++++...++.|..||..
T Consensus       237 ~-l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          237 D-LWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             C-EEEEETTTTEEEEEETT
T ss_pred             C-EEEeccCCceEEEECCC
Confidence            8 66566568899999983

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.24  E-value=3.6e-10  Score=98.05  Aligned_cols=203  Identities=10%  Similarity=0.008  Sum_probs=127.0

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      +...+.+|++.+ +++++++.. ++.|.+||..+..... +......               ....+...+       .|
T Consensus        65 ~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~-~~~~~~~---------------~p~~i~~~~-------~g  119 (270)
T 1rwi_B           65 GLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTV-LPFDGLN---------------YPEGLAVDT-------QG  119 (270)
T ss_dssp             SCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEE-CCCCSCS---------------SEEEEEECT-------TC
T ss_pred             CcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEee-eecCCcC---------------CCcceEECC-------CC
Confidence            345788999988 777776666 8899999987653321 1100000               000000000       11


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD  241 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  241 (407)
                         ...++...++.+.+++..+.............+.+++++|++ +++++...++.|.+||.....  .......+...
T Consensus       120 ---~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~  193 (270)
T 1rwi_B          120 ---AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNN--QVVLPFTDITA  193 (270)
T ss_dssp             ---CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCC--EEECCCSSCCS
T ss_pred             ---CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCc--eEeecccCCCC
Confidence               112222234445555443333222222233467889999998 677777778899999987655  22222233366


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      +.++++++ +++++++...++.|.+||...      .........+...+.+++++++|. |+++...++.|+++++...
T Consensus       194 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~------~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          194 PWGIAVDE-AGTVYVTEHNTNQVVKLLAGS------TTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEEEEECT-TCCEEEEETTTSCEEEECTTC------SCCEECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGG
T ss_pred             ceEEEECC-CCCEEEEECCCCcEEEEcCCC------CcceeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCc
Confidence            88999999 778877777788999999875      333222223335789999999997 7778888999999998875


Q ss_pred             Cc
Q 046899          322 GE  323 (407)
Q Consensus       322 ~~  323 (407)
                      +.
T Consensus       266 ~~  267 (270)
T 1rwi_B          266 HH  267 (270)
T ss_dssp             GS
T ss_pred             cc
Confidence            43

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.24  E-value=1.6e-10  Score=102.17  Aligned_cols=220  Identities=9%  Similarity=-0.017  Sum_probs=135.2

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCC
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGG  162 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  162 (407)
                      ..-..+..|+|.++.++++...++.|..||..++..                  ..+                       
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------~~~-----------------------   50 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------QRV-----------------------   50 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------EEE-----------------------
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------EEE-----------------------
Confidence            344567888987788888888888999999875421                  011                       


Q ss_pred             CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc--cCc
Q 046899          163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA--HNA  240 (407)
Q Consensus       163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~  240 (407)
                                                   .....+.+++++|++ +++++ . ++.|.+||..+++.........  ...
T Consensus        51 -----------------------------~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~   98 (297)
T 3g4e_A           51 -----------------------------TMDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNN   98 (297)
T ss_dssp             -----------------------------ECSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSE
T ss_pred             -----------------------------eCCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCC
Confidence                                         123468899999999 55544 4 5689999998766211111111  123


Q ss_pred             ceEEEEecCCCCCEEEEEeCC---------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          241 DIHCVDWNPHDVNLILTGSAD---------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      .++.++++| +++++++....         ..-.+|.+...     ++ +..+..+....+.++|+|+++.|+++.+.++
T Consensus        99 ~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-----g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~  171 (297)
T 3g4e_A           99 RFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD-----HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSY  171 (297)
T ss_dssp             EEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred             CCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECC-----CC-EEEEeeccccccceEEcCCCCEEEEecCCCC
Confidence            578899999 88866654221         22345554431     22 2223233345789999999998877888889


Q ss_pred             eEEEEeCC--CCCcc-----cccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccC
Q 046899          312 ILNIWDHE--KIGEK-----QDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYR  384 (407)
Q Consensus       312 ~i~vwd~~--~~~~~-----~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~  384 (407)
                      .|.+||+.  ++...     ..+........++++                  ...+...++....+.|.+||..     
T Consensus       172 ~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~------------------d~~G~lwva~~~~~~v~~~d~~-----  228 (297)
T 3g4e_A          172 SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI------------------DAEGKLWVACYNGGRVIRLDPV-----  228 (297)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE------------------BTTSCEEEEEETTTEEEEECTT-----
T ss_pred             cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE------------------CCCCCEEEEEcCCCEEEEEcCC-----
Confidence            99999974  33211     111111111222222                  2225444444455689999886     


Q ss_pred             ChHHHHHHHhhcccceeEeecc
Q 046899          385 PEEEVLAELDKFKSHIFGCDKS  406 (407)
Q Consensus       385 ~~~~~~~~~~~h~~~v~~~~~s  406 (407)
                       +++.+..+..+...+++++|+
T Consensus       229 -tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          229 -TGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             -TCCEEEEEECSSSBEEEEEEE
T ss_pred             -CceEEEEEECCCCCceEEEEe
Confidence             566666677676678888885

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.20  E-value=6.4e-10  Score=99.78  Aligned_cols=178  Identities=10%  Similarity=-0.022  Sum_probs=116.9

Q ss_pred             cccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec
Q 046899          169 SKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN  248 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~  248 (407)
                      ....++.++.|   ..+....+..+...+.+++|+|++ ++++++..++.|.+||..+++  .......+...+.+++++
T Consensus        22 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~   95 (333)
T 2dg1_A           22 PIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIH   95 (333)
T ss_dssp             CCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEEC
T ss_pred             EEeecccCccc---ccceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEEC
Confidence            33556667777   344555666677778999999998 778888889999999998776  333333456789999999


Q ss_pred             CCCCCEEEEEeCC----CcEEEEeCCCCCCCCCCCceeeec--CCCCCEEEEEEcCCCCCEEEEeeC------CCeEEEE
Q 046899          249 PHDVNLILTGSAD----NSIHMFDRRKLTSDGVGSPIHKFE--GHSAAVLCVQWSPDKSSVFGSSAE------DGILNIW  316 (407)
Q Consensus       249 ~~~~~~l~tg~~d----g~i~vwd~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~ll~s~~~------d~~i~vw  316 (407)
                      | +++++++...+    +.|.+||...      ......+.  .+...+.+++++|+|. ++++...      .+.|..+
T Consensus        96 ~-dg~l~v~~~~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~  167 (333)
T 2dg1_A           96 K-DGRLFVCYLGDFKSTGGIFAATENG------DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYV  167 (333)
T ss_dssp             T-TSCEEEEECTTSSSCCEEEEECTTS------CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEE
T ss_pred             C-CCcEEEEeCCCCCCCceEEEEeCCC------CEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEE
Confidence            9 88888777666    6899999887      44432332  2456799999999998 5445543      3556666


Q ss_pred             eCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEeecc
Q 046899          317 DHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIWRMI  379 (407)
Q Consensus       317 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iwd~~  379 (407)
                      |....+ ...+......+.+++|++|                  +..++ +.+.++.|++||+.
T Consensus       168 ~~~~~~-~~~~~~~~~~~~~i~~~~d------------------g~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          168 SPDFRT-VTPIIQNISVANGIALSTD------------------EKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             CTTSCC-EEEEEEEESSEEEEEECTT------------------SSEEEEEEGGGTEEEEEEEC
T ss_pred             eCCCCE-EEEeecCCCcccceEECCC------------------CCEEEEEeCCCCeEEEEEec
Confidence            665433 2222222223445566665                  44333 33345677777774

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.20  E-value=5.3e-10  Score=97.45  Aligned_cols=193  Identities=9%  Similarity=0.045  Sum_probs=133.9

Q ss_pred             CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899           95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN  174 (407)
Q Consensus        95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (407)
                      .+++|++++.|+.|.+||..+++.+..+..+..                      .......+.+.|.   .++  +.++
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----------------------~~~~~~~~~pdG~---ilv--s~~~   56 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----------------------WECNSVAATKAGE---ILF--SYSK   56 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT----------------------CCCCEEEECTTSC---EEE--ECBS
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----------------------CCCcCeEECCCCC---EEE--eCCC
Confidence            468999999999999999987765444332210                      0011111222222   122  3455


Q ss_pred             CCCCCCCCCcCceeeEeec-ccCEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCCCceeeec------ccCcceEEEE
Q 046899          175 GDKPLESPSIGARGKYLGH-EDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGSTPAVKVEK------AHNADIHCVD  246 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~l~  246 (407)
                      .+..+|. +++.+-.+..+ ...+.++.+.|+| +++++.+. ++.|..+|. +++  .+..+.      .+......++
T Consensus        57 ~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk--~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           57 GAKMITR-DGRELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGE--VLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             EEEEECT-TSCEEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSC--EEEEEEECCSCSSGGGSCSCCE
T ss_pred             CEEEECC-CCCEEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCC--EEEEEeccCCCCcccccccCce
Confidence            6778887 78888887764 3478899999999 78888776 778888875 455  333322      1222445567


Q ss_pred             ecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899          247 WNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD  326 (407)
Q Consensus       247 ~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  326 (407)
                      ..+ +++++++...++.|..||..       ++.+.++... ..+.++...++|..+ ++++.++.|..+|..+++.+-+
T Consensus       132 ~~~-~G~~lv~~~~~~~v~~~d~~-------G~~~w~~~~~-~~~~~~~~~~~g~~~-v~~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          132 KNK-KGNYLVPLFATSEVREIAPN-------GQLLNSVKLS-GTPFSSAFLDNGDCL-VACGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             ECT-TSCEEEEETTTTEEEEECTT-------SCEEEEEECS-SCCCEEEECTTSCEE-EECBTTSEEEEECTTTCCEEEE
T ss_pred             ECC-CCCEEEEecCCCEEEEECCC-------CCEEEEEECC-CCccceeEcCCCCEE-EEeCCCCeEEEEeCcCCcEEEE
Confidence            788 89999999999999999986       5888888764 345678888999854 5777788999999998888766


Q ss_pred             ccc
Q 046899          327 YGE  329 (407)
Q Consensus       327 ~~~  329 (407)
                      +..
T Consensus       202 ~~~  204 (276)
T 3no2_A          202 VNA  204 (276)
T ss_dssp             EEG
T ss_pred             ecC
Confidence            653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.18  E-value=1e-10  Score=102.07  Aligned_cols=150  Identities=11%  Similarity=-0.037  Sum_probs=116.4

Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEeecc-cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc-Ccce
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYLGHE-DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH-NADI  242 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v  242 (407)
                      ..+++++.++.+.+||.++++.+-.+..+. ..+.++.+.|+| ++++  +.++.|..||. +++  .+..+... ...+
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~--~~W~~~~~~~~~~   79 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGR--ELWNIAAPAGCEM   79 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSC--EEEEEECCTTCEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCC--EEEEEcCCCCccc
Confidence            346778889999999999999998888765 478899999999 7777  45788999998 677  56666554 3578


Q ss_pred             EEEEecCCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecC------CCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          243 HCVDWNPHDVNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~------h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      .++.+.+ +++++++.+. ++.|..+|. .      ++.+.++..      +......+++.++|.++ ++...++.|..
T Consensus        80 ~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~------Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l-v~~~~~~~v~~  150 (276)
T 3no2_A           80 QTARILP-DGNALVAWCGHPSTILEVNM-K------GEVLSKTEFETGIERPHAQFRQINKNKKGNYL-VPLFATSEVRE  150 (276)
T ss_dssp             EEEEECT-TSCEEEEEESTTEEEEEECT-T------SCEEEEEEECCSCSSGGGSCSCCEECTTSCEE-EEETTTTEEEE
T ss_pred             cccEECC-CCCEEEEecCCCCEEEEEeC-C------CCEEEEEeccCCCCcccccccCceECCCCCEE-EEecCCCEEEE
Confidence            8899999 8999998877 778888876 3      677666542      22245567889999955 68888999999


Q ss_pred             EeCCCCCcccccccC
Q 046899          316 WDHEKIGEKQDYGEL  330 (407)
Q Consensus       316 wd~~~~~~~~~~~~~  330 (407)
                      ||.. ++.+-++...
T Consensus       151 ~d~~-G~~~w~~~~~  164 (276)
T 3no2_A          151 IAPN-GQLLNSVKLS  164 (276)
T ss_dssp             ECTT-SCEEEEEECS
T ss_pred             ECCC-CCEEEEEECC
Confidence            9998 7877766553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.17  E-value=4.9e-10  Score=111.91  Aligned_cols=254  Identities=7%  Similarity=-0.056  Sum_probs=136.2

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCC-----CcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDS-----PDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      |...+..++|+| ++++||.+..+     .+|++||+.+++...........      .-..|..+ ....+........
T Consensus       161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~------~~~~wspD-~~l~~~~~~~~~~  232 (741)
T 1yr2_A          161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKF------SGLAWLGN-DALLYSRFAEPKE  232 (741)
T ss_dssp             --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEES------CCCEESTT-SEEEEEECCCC--
T ss_pred             CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCcee------ccEEEECC-CEEEEEEecCccc
Confidence            444788999999 88888776543     35999999988754321110000      00012111 0000000000000


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCc--eeeEee--cccCEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCC
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGA--RGKYLG--HEDTVEDVQFCPSSAQEFCSVGDD-----SCLILWDARSG  227 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~--~~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  227 (407)
                          +   ...........+.+|++.++..  ...+..  +...+..+.|+|+| ++|+..+.+     ..|.+||+.++
T Consensus       233 ----~---~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          233 ----G---QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             -------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             ----c---cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCC
Confidence                0   0000001122355666655442  222322  22358899999999 566655543     38999999876


Q ss_pred             CCCceeeecccCcceEEEEecCCCCCEEEEEeCC----CcEEEEeCCCCCCCCCCC-cee-eecCCCCCEEEEEEcCCCC
Q 046899          228 STPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD----NSIHMFDRRKLTSDGVGS-PIH-KFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       228 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d----g~i~vwd~~~~~~~~~~~-~~~-~~~~h~~~v~~v~~~~~~~  301 (407)
                      .......+..+...+.... +| ++..|+..+.+    +.|.+||+..      +. ... .+..+...+..++|+  +.
T Consensus       305 ~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~------~~~~~~~l~~~~~~~l~~~~~~--~~  374 (741)
T 1yr2_A          305 KIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSG------STPRFDTVVPESKDNLESVGIA--GN  374 (741)
T ss_dssp             EECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSS------SSCEEEEEECCCSSEEEEEEEE--BT
T ss_pred             CCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCC------CccccEEEecCCCCeEEEEEEE--CC
Confidence            2111233334444444443 47 67777766653    4599999876      31 223 334455567778887  34


Q ss_pred             CEEEEeeCCCeEEEEeCC-CCCccccccc-CCCcccCCCCcCcchhccccceeeeeEeeCccceee----eEEEeeeEEE
Q 046899          302 SVFGSSAEDGILNIWDHE-KIGEKQDYGE-LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV----CLTMVKVLEI  375 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~----~~~~d~~i~i  375 (407)
                      +++++...|+..+||.+. .++....+.. ....+..+.+++|                  +..|+    +....++|++
T Consensus       375 ~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d------------------~~~l~~~~ss~~~P~~i~~  436 (741)
T 1yr2_A          375 RLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPG------------------DRHAYLSFSSFTQPATVLA  436 (741)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBT------------------CSCEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCC------------------CCEEEEEEcCCCCCCEEEE
Confidence            477788999988887654 3344444432 2344555666665                  44444    3334569999


Q ss_pred             eecc
Q 046899          376 WRMI  379 (407)
Q Consensus       376 wd~~  379 (407)
                      ||+.
T Consensus       437 ~d~~  440 (741)
T 1yr2_A          437 LDPA  440 (741)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9986

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.16  E-value=5.1e-09  Score=92.89  Aligned_cols=231  Identities=9%  Similarity=0.063  Sum_probs=138.7

Q ss_pred             eCCCceEEEEEeCCCCeEEEE-------eeCCCcEEEEeCcCCCCccccc----CcCC------CCCC-C-------CCc
Q 046899           81 IHPGEVNRIRELPQNSKIVAT-------HTDSPDVLIWDVEAQPNRHAVL----GAAD------SHPD-L-------DQS  135 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~t-------g~~dg~i~vwd~~~~~~~~~~~----~~~~------~~~~-~-------d~~  135 (407)
                      ..-....+++|.+ +++++++       +..++.|.+||..+++......    ++..      ..++ .       ...
T Consensus        15 ~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           15 EDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             CCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             ccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            3445678899987 7788888       6778899999987665432111    0000      0111 1       234


Q ss_pred             EEEEecccccccc-ccCCC-----CCcccccCCCCCccccccCC---------------CCCCCCCCCCcCceeeEeecc
Q 046899          136 VVLWSIQDHVSAL-AAEPG-----SAKSTASGGANSKNASKSGG---------------NGDKPLESPSIGARGKYLGHE  194 (407)
Q Consensus       136 i~~w~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~---------------~~i~i~d~~~~~~~~~~~~~~  194 (407)
                      +.+|+.......+ .....     ....+.........++...+               +.+..++.. ++. ..+..+.
T Consensus        94 l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~  171 (314)
T 1pjx_A           94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVDTAF  171 (314)
T ss_dssp             EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEEEEE
T ss_pred             EEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEeccCC
Confidence            5566655211111 11000     01111111112223332222               344455544 333 2333344


Q ss_pred             cCEEEEEEC----CCCCcEEEEEeCCCcEEEEEcC-CCCCC---ceeeecccC-cceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          195 DTVEDVQFC----PSSAQEFCSVGDDSCLILWDAR-SGSTP---AVKVEKAHN-ADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       195 ~~v~~l~~~----~~~~~~l~s~~~dg~i~iwd~~-~~~~~---~~~~~~~~~-~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      .....++++    |++..++++...++.|.+||+. ++...   ....+..+. ..+..+++++ +++++++...++.|.
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIE  250 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEE
Confidence            567889999    9883345555678999999986 33210   112222333 5678899999 888888877889999


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      +||.++      ++.+..+..+...+.+++|+|++..|+++...++.|..|++...
T Consensus       251 ~~d~~~------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          251 VFGPDG------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EECTTC------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEcCCC------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            999986      56667777676789999999999877777777789999998753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.14  E-value=2.2e-08  Score=88.01  Aligned_cols=223  Identities=8%  Similarity=-0.031  Sum_probs=134.9

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCC------CCC--------CCcEEEEecccccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSH------PDL--------DQSVVLWSIQDHVS  146 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~------~~~--------d~~i~~w~~~~~~~  146 (407)
                      ....+.+|.+.+ ++++.++...++.|.+||.. ++.... +.......      ++.        ++.+..++......
T Consensus        18 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~   95 (300)
T 2qc5_A           18 PDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFT   95 (300)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeE
Confidence            456788999888 78888877778899999987 432221 11000000      000        34566666552222


Q ss_pred             ccccC--CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 046899          147 ALAAE--PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWD  223 (407)
Q Consensus       147 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  223 (407)
                      .+...  ......+.........++...++.+..++.. ++.... +......+.++++.+++ +++++...++.|..+|
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEEC
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEEC
Confidence            12111  1111112222222334444445667777766 443321 22234678999999998 6777766678999999


Q ss_pred             cCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCCCC
Q 046899          224 ARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDKSS  302 (407)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~  302 (407)
                      . +++. ...........+.++++++ ++++.++....+.|.+||..       ++... .+..+...+.+++++++|. 
T Consensus       174 ~-~g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~i~~d~~g~-  242 (300)
T 2qc5_A          174 N-TGKL-EEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTT-------GEISEYDIPTPNARPHAITAGKNSE-  242 (300)
T ss_dssp             T-TCCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTT-------CCEEEEECSSTTCCEEEEEECSTTC-
T ss_pred             C-CCcE-EEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCC-------CcEEEEECCCCCCCceEEEECCCCC-
Confidence            8 4541 1112223445688999999 78877776667889999983       33332 2333456789999999988 


Q ss_pred             EEEEeeCCCeEEEEeCC
Q 046899          303 VFGSSAEDGILNIWDHE  319 (407)
Q Consensus       303 ll~s~~~d~~i~vwd~~  319 (407)
                      |+++...++.|..||..
T Consensus       243 l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          243 IWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEEETTTTEEEEECTT
T ss_pred             EEEeccCCCeEEEECCC
Confidence            66666667899999984

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.13  E-value=1.6e-10  Score=114.64  Aligned_cols=199  Identities=7%  Similarity=-0.093  Sum_probs=123.7

Q ss_pred             ccCCCCCCCCCCCCcCce-eeEeecccCE--EEEEECCCCCcEEEEEeCCCc-------------EEEEEcCCCCCC--c
Q 046899          170 KSGGNGDKPLESPSIGAR-GKYLGHEDTV--EDVQFCPSSAQEFCSVGDDSC-------------LILWDARSGSTP--A  231 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~-~~~~~~~~~v--~~l~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~--~  231 (407)
                      ++.+..|++||+.+++.+ ..   +...+  ..++|+|+| ..|+.++.|..             |++|++.++...  .
T Consensus       143 G~~~~~i~v~dl~tg~~~~~~---~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l  218 (695)
T 2bkl_A          143 AADEAVLHVIDVDSGEWSKVD---VIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV  218 (695)
T ss_dssp             TCSCCEEEEEETTTCCBCSSC---CBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE
T ss_pred             CCceEEEEEEECCCCCCcCCc---ccCcccccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE
Confidence            445678999999988765 22   22222  678999999 67888877765             999999877622  2


Q ss_pred             eeeecccCcceEEEEecCCCCCEEEEEeCCC----cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe
Q 046899          232 VKVEKAHNADIHCVDWNPHDVNLILTGSADN----SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS  307 (407)
Q Consensus       232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg----~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~  307 (407)
                      +.....+...+.++.|+| ++++|+.++.++    .|.++|...      + ....+..+...+....+ ++|. +++++
T Consensus       219 v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~------~-~~~~l~~~~~~~~~~~~-~~g~-l~~~s  288 (695)
T 2bkl_A          219 VHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGE------K-DFRLLVKGVGAKYEVHA-WKDR-FYVLT  288 (695)
T ss_dssp             EECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTC------S-SCEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred             EEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCC------C-ceEEeecCCCceEEEEe-cCCc-EEEEE
Confidence            233334556788999999 888888777665    666775543      3 34455555556666667 5677 66555


Q ss_pred             e---CCCeEEEEeCCCCCc--ccccccC--CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          308 A---EDGILNIWDHEKIGE--KQDYGEL--KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       308 ~---~d~~i~vwd~~~~~~--~~~~~~~--~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      .   .++.|.+||+.+++.  .+.+..+  ...+..+++                 .  .+..+++...|+..+||.+.-
T Consensus       289 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~-----------------~--~~~lv~~~~~dg~~~l~~~~~  349 (695)
T 2bkl_A          289 DEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI-----------------V--GGHLSLEYLKDATSEVRVATL  349 (695)
T ss_dssp             CTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE-----------------E--TTEEEEEEEETTEEEEEEEET
T ss_pred             CCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE-----------------E--CCEEEEEEEECCEEEEEEEeC
Confidence            4   358999999987643  1222222  222222222                 1  245677888888888886641


Q ss_pred             cccCChHHHHHHHhhc-ccceeEeecc
Q 046899          381 LIYRPEEEVLAELDKF-KSHIFGCDKS  406 (407)
Q Consensus       381 ~~~~~~~~~~~~~~~h-~~~v~~~~~s  406 (407)
                           .++.+..+..+ .+.|..+++|
T Consensus       350 -----~g~~~~~l~~~~~~~v~~~~~s  371 (695)
T 2bkl_A          350 -----KGKPVRTVQLPGVGAASNLMGL  371 (695)
T ss_dssp             -----TCCEEEECCCSSSSEECCCBSC
T ss_pred             -----CCCeeEEecCCCCeEEEEeecC
Confidence                 12222223333 4556666655

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.10  E-value=2.6e-09  Score=102.44  Aligned_cols=200  Identities=8%  Similarity=-0.031  Sum_probs=135.2

Q ss_pred             CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899           95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN  174 (407)
Q Consensus        95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (407)
                      .+.++++...+++|.++|..+++.+..+.....                        +..+.+.+.|+   .+.+++.++
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~------------------------p~~v~~SpDGr---~lyv~~~dg  218 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA------------------------VHISRLSASGR---YLFVIGRDG  218 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSSC------------------------EEEEEECTTSC---EEEEEETTS
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC------------------------ccceEECCCCC---EEEEEcCCC
Confidence            456777888899999999998876655432111                        00112222222   233445677


Q ss_pred             CCCCCCCC--CcCceeeEeecccCEEEEEEC----CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc----------c
Q 046899          175 GDKPLESP--SIGARGKYLGHEDTVEDVQFC----PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA----------H  238 (407)
Q Consensus       175 ~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~  238 (407)
                      .+.+||+.  +++.+..+.... ....++|+    |+|..++++...+++|.++|..+.+  .+..+..          |
T Consensus       219 ~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~  295 (567)
T 1qks_A          219 KVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYH  295 (567)
T ss_dssp             EEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEE
T ss_pred             eEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc--EEEEEecccccccccccc
Confidence            88999985  777777776433 45799999    6984455555567999999998877  3443321          2


Q ss_pred             Cc-ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          239 NA-DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       239 ~~-~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      .. .+..+..++....+++....+|.|.++|.....    ...+..+. ......++.|+|++++++++...++.|.++|
T Consensus       296 p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~----~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD  370 (567)
T 1qks_A          296 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVID  370 (567)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc----cceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEE
Confidence            22 577888888445566666778999999998622    12233333 3456788999999999988887889999999


Q ss_pred             CCCCCccccccc
Q 046899          318 HEKIGEKQDYGE  329 (407)
Q Consensus       318 ~~~~~~~~~~~~  329 (407)
                      +.+++....+..
T Consensus       371 ~~t~kl~~~i~v  382 (567)
T 1qks_A          371 TKEGKLVAIEDT  382 (567)
T ss_dssp             TTTTEEEEEEEC
T ss_pred             CCCCcEEEEEec
Confidence            999876655543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.09  E-value=9.7e-11  Score=105.74  Aligned_cols=100  Identities=16%  Similarity=0.265  Sum_probs=70.1

Q ss_pred             cCEEEEEECCCCCcEEEEEeCC---C--cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC--------
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDD---S--CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD--------  261 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d--------  261 (407)
                      ..+..++|+|+| +.|+.++.+   +  .|.+||+.+++  .. .+..+.. +..+.|+| +++.|+.++.+        
T Consensus        59 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~--~~-~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           59 ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLS--SK-KILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFI  132 (347)
T ss_dssp             ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTE--EE-EEEEESE-EEEEEECT-TSSEEEEEEECCCC-----
T ss_pred             ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCc--eE-EEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcE
Confidence            467889999999 666666543   3  37788887765  22 2233344 89999999 88888877632        


Q ss_pred             -------------------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          262 -------------------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       262 -------------------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                                         ..|.+||+..      ++.+..+.. . .+..++|+|+|  +++++..+
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~------~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~  190 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFDTES------EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHR  190 (347)
T ss_dssp             ----CCCC---------CEEEEEEEETTT------TEEEEEEEE-E-TTCEEEEETTE--EEEEEECC
T ss_pred             EEcccceeecCcccccCccceEEEEECCC------CeEEeeecC-C-CcccccCCCCe--EEEEEecc
Confidence                               5789999987      555355544 3 78899999999  44566544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.08  E-value=6.3e-09  Score=96.05  Aligned_cols=203  Identities=11%  Similarity=0.001  Sum_probs=120.6

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCC
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGA  163 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  163 (407)
                      .....|+|.+ +++++++...++.|++||..++............      . ..|+..                  +  
T Consensus       131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~------~-ia~~~~------------------g--  182 (409)
T 3hrp_A          131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG------K-PAVTKD------------------K--  182 (409)
T ss_dssp             CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC------B-CEECTT------------------S--
T ss_pred             CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC------c-eeEecC------------------C--
Confidence            4678999998 8888888888899999999865433222111000      0 011111                  1  


Q ss_pred             CCccccccCCC--CCCCCCCCCcCceeeE----eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee---
Q 046899          164 NSKNASKSGGN--GDKPLESPSIGARGKY----LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV---  234 (407)
Q Consensus       164 ~~~~~~~~~~~--~i~i~d~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---  234 (407)
                       ..+..+..++  .+..++.........+    ......+.+++++|++..+++ +..++.|..||..++.  ....   
T Consensus       183 -~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~  258 (409)
T 3hrp_A          183 -QRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQL  258 (409)
T ss_dssp             -SEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEEC
T ss_pred             -CcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecc
Confidence             1111111211  3333443333222222    113456788999995425444 6678899999998765  2221   


Q ss_pred             -ecccCcce--EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC---------------CCCEEEEEE
Q 046899          235 -EKAHNADI--HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH---------------SAAVLCVQW  296 (407)
Q Consensus       235 -~~~~~~~v--~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h---------------~~~v~~v~~  296 (407)
                       ..+....-  ..++|+|.++.++++-...+.|+.|+...       . +..+.++               -.....+++
T Consensus       259 ~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-------~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~  330 (409)
T 3hrp_A          259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-------E-CEWFCGSATQKTVQDGLREEALFAQPNGMTV  330 (409)
T ss_dssp             CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-------C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred             cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-------C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence             11222222  38999995566666767788999998764       2 3333222               135789999


Q ss_pred             cCCCCCEEEEee-CCCeEEEEeCCCCCcccccc
Q 046899          297 SPDKSSVFGSSA-EDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       297 ~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~  328 (407)
                      +|+|. |+++-+ .++.|+.||+..+. +..+.
T Consensus       331 d~dG~-lyvad~~~~~~I~~~~~~~G~-v~~~~  361 (409)
T 3hrp_A          331 DEDGN-FYIVDGFKGYCLRKLDILDGY-VSTVA  361 (409)
T ss_dssp             CTTCC-EEEEETTTTCEEEEEETTTTE-EEEEE
T ss_pred             eCCCC-EEEEeCCCCCEEEEEECCCCE-EEEEe
Confidence            99998 777777 88999999977644 34333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.04  E-value=8.7e-09  Score=101.99  Aligned_cols=253  Identities=12%  Similarity=0.057  Sum_probs=137.7

Q ss_pred             CCCceEEEEEeCCCCeEEEE-----eeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           82 HPGEVNRIRELPQNSKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~t-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      |...+..++|+| ++++||-     |+...+|++||+.+++.+.........      .-..|. +.....+......  
T Consensus       127 ~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~------~~~~Ws-Dg~~l~y~~~~~~--  196 (693)
T 3iuj_A          127 GTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKF------SGISWL-GNEGFFYSSYDKP--  196 (693)
T ss_dssp             SCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEES------CCCEEE-TTTEEEEEESSCC--
T ss_pred             CcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCcee------ccEEEe-CCCEEEEEEecCc--
Confidence            556788899999 8887773     333457999999988754321110000      001233 2211111100000  


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCc--eeeEe--e-cccCEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCC
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGA--RGKYL--G-HEDTVEDVQFCPSSAQEFCSVGD---DSCLILWDARSGS  228 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~--~-~~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~  228 (407)
                         .+   ...........+.+|++.+...  ...+.  . |...+..+.|+|++..++++.+.   +..|.++|+.++.
T Consensus       197 ---~~---~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          197 ---DG---SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             ---C----------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             ---cc---ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence               00   0000001123355566655432  22222  2 34457889999999545555543   3589999998764


Q ss_pred             CCceeeecccCcceEEEEecCCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCCc--eeeecCCCCCEEEEEEcCCCCCE
Q 046899          229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---NSIHMFDRRKLTSDGVGSP--IHKFEGHSAAVLCVQWSPDKSSV  303 (407)
Q Consensus       229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g~i~vwd~~~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l  303 (407)
                      .. ...+..+....... |++.++.+++....+   +.|..+|+..      +..  ...+..|...+.  .|++++.+|
T Consensus       271 ~~-~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~--~~s~~g~~l  340 (693)
T 3iuj_A          271 AP-LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN------PGPAHWRDLIPERQQVL--TVHSGSGYL  340 (693)
T ss_dssp             CC-CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS------CCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred             Cc-eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC------CCccccEEEecCCCCEE--EEEEECCEE
Confidence            21 33444555555444 555244555555443   5799999987      333  456666666665  899999988


Q ss_pred             EEEeeCCC--eEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEe----eeEEEe
Q 046899          304 FGSSAEDG--ILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMV----KVLEIW  376 (407)
Q Consensus       304 l~s~~~d~--~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d----~~i~iw  376 (407)
                      +++...++  .|++||+... ....+. .....+..+.++++                  +..++....+    ++|+.|
T Consensus       341 v~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d------------------~~~l~~~~ss~~tP~~l~~~  401 (693)
T 3iuj_A          341 FAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHD------------------DPALYFGFENYAQPPTLYRF  401 (693)
T ss_dssp             EEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTT------------------CSCEEEEEECSSSCCEEEEE
T ss_pred             EEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCC------------------CCEEEEEecCCCCCCEEEEE
Confidence            76666665  6889998743 333332 12233445556555                  4444433333    578888


Q ss_pred             ecc
Q 046899          377 RMI  379 (407)
Q Consensus       377 d~~  379 (407)
                      |+.
T Consensus       402 d~~  404 (693)
T 3iuj_A          402 EPK  404 (693)
T ss_dssp             CTT
T ss_pred             ECC
Confidence            875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.03  E-value=5.3e-08  Score=85.77  Aligned_cols=112  Identities=9%  Similarity=0.065  Sum_probs=84.3

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CCCCC---ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--SGSTP---AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                      .+....+.++|+|++..++++.+.++.|..||+.  ++...   ....+..+......+++++ ++++.++....+.|..
T Consensus       146 ~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~  224 (297)
T 3g4e_A          146 DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIR  224 (297)
T ss_dssp             EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEE
T ss_pred             eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEE
Confidence            3445568999999995456677778999999984  44310   1112223345678899999 8888888777889999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEc-CCCCCEEEEeeCC
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS-PDKSSVFGSSAED  310 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~ll~s~~~d  310 (407)
                      ||..+      ++.+..+..+...+++++|. |+++.|+++...+
T Consensus       225 ~d~~t------G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          225 LDPVT------GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             ECTTT------CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EcCCC------ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            99988      78888888777789999998 8988888777654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.99  E-value=4.9e-08  Score=87.24  Aligned_cols=217  Identities=11%  Similarity=0.014  Sum_probs=123.4

Q ss_pred             eEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCC
Q 046899           86 VNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANS  165 (407)
Q Consensus        86 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (407)
                      ..+..|+|+++.+++++..++.|..||..++...                  .|........+..       .+.|.   
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------~~~~~~~v~~i~~-------~~dg~---  102 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT------------------VHALPFMGSALAK-------ISDSK---  102 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE------------------EEECSSCEEEEEE-------EETTE---
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE------------------EEECCCcceEEEE-------eCCCe---
Confidence            4677899966888888888899999998765321                  1111110000000       11111   


Q ss_pred             ccccccCCCCCCCCCCCCcCceeeEee----cccCEEEEEECCCCCcEEEEEeC------CCcEEEEEcCCCCCCceeee
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKYLG----HEDTVEDVQFCPSSAQEFCSVGD------DSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~  235 (407)
                       +..+.. ..+.+||..+++.......    ....+++++++|+| +++++...      .+.|..+|  +++   ...+
T Consensus       103 -l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~---~~~~  174 (326)
T 2ghs_A          103 -QLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGK---VTKL  174 (326)
T ss_dssp             -EEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTE---EEEE
T ss_pred             -EEEEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCc---EEEe
Confidence             111122 2256666655553222111    12368899999999 66655432      24455555  333   2222


Q ss_pred             cccCcceEEEEecCCCCCEEEE-EeCCCcEEEEeCC--CC-CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          236 KAHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRR--KL-TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~t-g~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      .........++|+| +++.++. .+.++.|.+||+.  +. . ....+.+..+......+..++++++|. ++++...++
T Consensus       175 ~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~-~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~  251 (326)
T 2ghs_A          175 FADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLP-TGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEG  251 (326)
T ss_dssp             EEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCB-SSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTT
T ss_pred             eCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCc-ccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCC
Confidence            23334567899999 7876644 4557899999986  31 0 000012233333445678999999997 555665678


Q ss_pred             eEEEEeCCCCCcccccccCCCcccCCCCc-Cc
Q 046899          312 ILNIWDHEKIGEKQDYGELKYPIIHPAYS-SD  342 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~d  342 (407)
                      .|.+||. .++.+..+......+++++|+ +|
T Consensus       252 ~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          252 AVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             EEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred             EEEEECC-CCCEEEEEECCCCCcEEEEEecCC
Confidence            8999998 455555555444445666665 44

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.96  E-value=3.5e-07  Score=83.13  Aligned_cols=226  Identities=12%  Similarity=0.009  Sum_probs=135.0

Q ss_pred             EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCc-------------CCCCCCC----------CC
Q 046899           88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGA-------------ADSHPDL----------DQ  134 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~~~----------d~  134 (407)
                      .+.++| +++.|+.+.          .++.|.+||..+.+....+...             ....++.          +.
T Consensus        70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence            899999 777777764          3678999999877655443221             0111111          35


Q ss_pred             cEEEEeccccccccc-cCC-CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe-----ecccCE-EEEEECCCC
Q 046899          135 SVVLWSIQDHVSALA-AEP-GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL-----GHEDTV-EDVQFCPSS  206 (407)
Q Consensus       135 ~i~~w~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~v-~~l~~~~~~  206 (407)
                      .|.++| .+...... ... .+..+.+.+.  ..+++...++.+.+++. +++.+....     ....++ ....+.+++
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~  224 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPTCYHIHPGAP--STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCceEEEEeCCC--ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC
Confidence            577777 65433211 111 1111122221  12345567888888888 666553221     111121 234556665


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCceeeecc----------cCcceEEEEecCCCCCEEEEEeC----------CCcEEE
Q 046899          207 AQEFCSVGDDSCLILWDARSGSTPAVKVEKA----------HNADIHCVDWNPHDVNLILTGSA----------DNSIHM  266 (407)
Q Consensus       207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~l~tg~~----------dg~i~v  266 (407)
                      ..+++. +..+.+.+.|+..........+..          .......+.++| +++.++++..          .+.|.+
T Consensus       225 ~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          225 GRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             CEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCCCeEEE
Confidence            344444 367899999997654211222111          122334478899 7776666543          357999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCCCCccccc
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEKIGEKQDY  327 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~  327 (407)
                      +|..+      .+.+.++.. .....+++|+|+|+++++++. .++.|.++|+.+++.+..+
T Consensus       303 ID~~t------~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          303 VTGLV------GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EECCC------CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            99998      788888864 345799999999994344555 6899999999998888773

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.94  E-value=3.9e-09  Score=93.65  Aligned_cols=200  Identities=11%  Similarity=-0.036  Sum_probs=121.0

Q ss_pred             ccCCCCCCCCCCCCcCceeeEe----ecccCEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCCCceee-ec----ccC
Q 046899          170 KSGGNGDKPLESPSIGARGKYL----GHEDTVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGSTPAVKV-EK----AHN  239 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~----~~~  239 (407)
                      ...++.+..||..+++......    ++...+.+++++++ + +++++.. ++.|.+||.. ++  .... ..    ...
T Consensus        42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~--~~~~~~~~~~~~~~  116 (314)
T 1pjx_A           42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GT--FEEIAKKDSEGRRM  116 (314)
T ss_dssp             TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SC--EEECCSBCTTSCBC
T ss_pred             CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CC--EEEEEeccCCCccc
Confidence            3456778888877666432221    14467899999999 6 6555544 4579999987 55  2222 11    112


Q ss_pred             cceEEEEecCCCCCEEEEEeCC---------------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc----CCC
Q 046899          240 ADIHCVDWNPHDVNLILTGSAD---------------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS----PDK  300 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~----~~~  300 (407)
                      ..+.++++++ +++++++...+               +.|..||...       +.. .+..+......++|+    |++
T Consensus       117 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-------~~~-~~~~~~~~~~~i~~~~~~d~dg  187 (314)
T 1pjx_A          117 QGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-------QMI-QVDTAFQFPNGIAVRHMNDGRP  187 (314)
T ss_dssp             BCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-------CEE-EEEEEESSEEEEEEEECTTSCE
T ss_pred             cCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCC-------CEE-EeccCCCCcceEEEecccCCCC
Confidence            3578999999 88877776654               4666676542       222 222233456899999    999


Q ss_pred             CCEEEEeeCCCeEEEEeCC-CCC-----cccccccCC-CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeE
Q 046899          301 SSVFGSSAEDGILNIWDHE-KIG-----EKQDYGELK-YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVL  373 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~-~~~-----~~~~~~~~~-~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i  373 (407)
                      +.++++...++.|.+||+. .++     ....+..+. ..+.+++++++                  +...++...++.|
T Consensus       188 ~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~------------------G~l~v~~~~~~~i  249 (314)
T 1pjx_A          188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED------------------NNLLVANWGSSHI  249 (314)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT------------------CCEEEEEETTTEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC------------------CCEEEEEcCCCEE
Confidence            7777677778999999976 222     111122111 22222333322                  5555555567799


Q ss_pred             EEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          374 EIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      .+||..      +++.+..+..+...+.+++|++
T Consensus       250 ~~~d~~------~g~~~~~~~~~~~~~~~i~~~~  277 (314)
T 1pjx_A          250 EVFGPD------GGQPKMRIRCPFEKPSNLHFKP  277 (314)
T ss_dssp             EEECTT------CBSCSEEEECSSSCEEEEEECT
T ss_pred             EEEcCC------CCcEeEEEeCCCCCceeEEECC
Confidence            999986      3444444445556778887753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.93  E-value=3e-07  Score=80.53  Aligned_cols=222  Identities=9%  Similarity=-0.056  Sum_probs=130.6

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccC--cCCCC------CCC--------CCcEEEEeccccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLG--AADSH------PDL--------DQSVVLWSIQDHV  145 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~--~~~~~------~~~--------d~~i~~w~~~~~~  145 (407)
                      +...+.++++.+ +++++++...++.|..||... .. ..+..  .....      ++.        ++.+..++.....
T Consensus        55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~  131 (299)
T 2z2n_A           55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKKG-II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKI  131 (299)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTS-CE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE
T ss_pred             ccCceeeEEECC-CCCEEEeCCCCCeEEEECCCC-cE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCE
Confidence            457799999888 788888877788899999762 21 11110  00000      000        3456666653222


Q ss_pred             cccccC--CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee-EeecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899          146 SALAAE--PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK-YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW  222 (407)
Q Consensus       146 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  222 (407)
                      ..+...  ......+.........++....+.+..+|. +++.... .......+.++++++++ .++++...++.|..|
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~  209 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRI  209 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEE
Confidence            211111  111111222222233343445567777777 5544322 22334568899999998 677776678899999


Q ss_pred             EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce-eeecCCCCCEEEEEEcCCCC
Q 046899          223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI-HKFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~  301 (407)
                      |. ++.. .......+...+.++++++ +++++++...++.|..||..       +... ..+..+...+.++++ +++.
T Consensus       210 ~~-~g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~-------g~~~~~~~~~~~~~~~~i~~-~~g~  278 (299)
T 2z2n_A          210 TT-SGEI-TEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTSN-------NIIEEYPIQIKSAEPHGICF-DGET  278 (299)
T ss_dssp             CT-TCCE-EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEETT-------TEEEEEECSSSSCCEEEEEE-CSSC
T ss_pred             CC-CCcE-EEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECCC-------CceEEEeCCCCCCccceEEe-cCCC
Confidence            98 5552 1122233456789999999 78877766678899999983       3322 123345567999999 8887


Q ss_pred             CEEEEeeCCCeEEEEeCCCC
Q 046899          302 SVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~~~  321 (407)
                       |+++.+ .+.+..+|.++.
T Consensus       279 -l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          279 -IWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             -EEEEET-TTEEEEEEEC--
T ss_pred             -EEEEec-CCcEEEEEcCcc
Confidence             554444 567777787653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.92  E-value=1.6e-08  Score=91.20  Aligned_cols=232  Identities=11%  Similarity=0.053  Sum_probs=137.4

Q ss_pred             EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCcC-------------CCCCCC----------CC
Q 046899           88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGAA-------------DSHPDL----------DQ  134 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~----------d~  134 (407)
                      .++++| +++.|..+.          .++.|.+||..+.+....+....             ...++.          ++
T Consensus        82 ~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~  160 (386)
T 3sjl_D           82 NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  160 (386)
T ss_dssp             EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence            399999 676665554          35789999999988666543211             111111          45


Q ss_pred             cEEEEeccccccccccCCCCC-cccccCCCCCccccccCCCCCCCCCCCC-cCceeeEeec----ccCEE-EEEEC-CCC
Q 046899          135 SVVLWSIQDHVSALAAEPGSA-KSTASGGANSKNASKSGGNGDKPLESPS-IGARGKYLGH----EDTVE-DVQFC-PSS  206 (407)
Q Consensus       135 ~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~----~~~v~-~l~~~-~~~  206 (407)
                      .+.++|+.+....-.....+. ...+.+  ...+++.+.||++.+.+... ++.......+    ..++. ...|. ++|
T Consensus       161 ~VsVID~~t~~vv~tI~v~g~~~~~P~g--~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDVPDCYHIFPTA--PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEE--TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             eEEEEECCCCcEEEEEECCCcceeecCC--CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            677777776633222211110 111111  12234556677776666654 3432211111    11221 23553 566


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCceeeec----------ccCcceEEEEecCCCCCEEEEEeC----------CCcEEE
Q 046899          207 AQEFCSVGDDSCLILWDARSGSTPAVKVEK----------AHNADIHCVDWNPHDVNLILTGSA----------DNSIHM  266 (407)
Q Consensus       207 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~v~~l~~~~~~~~~l~tg~~----------dg~i~v  266 (407)
                       .+++ .+.+|.|.+.|+............          -.......+++++ +++.++....          ...|.+
T Consensus       239 -~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          239 -RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             -EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             -cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEE
Confidence             5444 556899999999765421111111          0122334577788 6666666532          257999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC-CEEEEeeCCCeEEEEeCCCCCcccccccCCC
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGILNIWDHEKIGEKQDYGELKY  332 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  332 (407)
                      +|+.+      ++.+.++.. ...+.+++++++++ .|+++...++.|.++|..+++.+.++.....
T Consensus       316 iD~~t------~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~  375 (386)
T 3sjl_D          316 LDAKT------GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH  375 (386)
T ss_dssp             EETTT------CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred             EECCC------CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence            99999      888888864 34788999999997 5665566799999999999998888765444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.92  E-value=1.3e-07  Score=86.07  Aligned_cols=187  Identities=8%  Similarity=-0.057  Sum_probs=113.7

Q ss_pred             CCCCCCCCCCCCcCceeeEeec-------ccCEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCCCceee-ecccCcc
Q 046899          172 GGNGDKPLESPSIGARGKYLGH-------EDTVEDVQFCPSSAQEFCSVGD--DSCLILWDARSGSTPAVKV-EKAHNAD  241 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~-~~~~~~~  241 (407)
                      .++.+.++|..+++.+..+.-.       ...-..++|+|+| ++|+.++.  ++.|.++| .+++  .... +. ....
T Consensus        95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~--~~~~~i~-~~~~  169 (373)
T 2mad_H           95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGS--SDDQLLS-SPTC  169 (373)
T ss_pred             CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCC--EEeEEcC-CCce
Confidence            3567788888888777665422       1234589999999 66666653  58899999 8877  3444 32 2221


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC------------------------CC------------------C-
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD------------------------GV------------------G-  278 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~------------------------~~------------------~-  278 (407)
                         +.+.|...+.+++.+.||.+.++|. .....                        +.                  . 
T Consensus       170 ---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~  245 (373)
T 2mad_H          170 ---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence               2333323344455555666666655 21000                        00                  0 


Q ss_pred             -CceeeecC----------CCCCEEEEEEcCCCCCEEEEee---------CCCeEEEEeCCCCCcccccccCCCcccCCC
Q 046899          279 -SPIHKFEG----------HSAAVLCVQWSPDKSSVFGSSA---------EDGILNIWDHEKIGEKQDYGELKYPIIHPA  338 (407)
Q Consensus       279 -~~~~~~~~----------h~~~v~~v~~~~~~~~ll~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  338 (407)
                       ..+..+..          .......++++|++.+++++..         .++.|.++|+.+.+.+.++.... ...++.
T Consensus       246 ~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~  324 (373)
T 2mad_H          246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAIS  324 (373)
T ss_pred             ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEE
Confidence             00011100          0112334788999888876543         24689999999988888875433 467888


Q ss_pred             CcCcchhccccceeeeeEeeCccc-eeeeEE-EeeeEEEeeccccccCChHHHHHH
Q 046899          339 YSSDMLDIETKLLTSIGMHLIHGR-LLVCLT-MVKVLEIWRMIDLIYRPEEEVLAE  392 (407)
Q Consensus       339 ~s~d~~~~~~~~~~~~~~~~~~~~-~i~~~~-~d~~i~iwd~~~~~~~~~~~~~~~  392 (407)
                      |++|                  +. .++++. .++.|.|+|..      +++.++.
T Consensus       325 ~s~D------------------g~~~l~v~~~~~~~V~ViD~~------t~~vv~~  356 (373)
T 2mad_H          325 VAQD------------------GGPDLYALSAGTEVLHIYDAG------AGDQDQS  356 (373)
T ss_pred             ECCC------------------CCeEEEEEcCCCCeEEEEECC------CCCEEee
Confidence            9888                  66 566665 58899999998      6666655

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.88  E-value=8.6e-08  Score=84.78  Aligned_cols=160  Identities=11%  Similarity=-0.003  Sum_probs=105.0

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      +...........|+|+...+++++..++.|..|+.. +.                                         
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-----------------------------------------   77 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-----------------------------------------   77 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-----------------------------------------
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-----------------------------------------
Confidence            334556678899999444488888888899999763 21                                         


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH  238 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (407)
                                                  ...+..+...+..++++++| +++++...++.|..||.. ++  ........
T Consensus        78 ----------------------------~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~--~~~~~~~~  125 (305)
T 3dr2_A           78 ----------------------------VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQ--AHLLVGRY  125 (305)
T ss_dssp             ----------------------------EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEECEE
T ss_pred             ----------------------------EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CC--EEEEEecc
Confidence                                        01122234567899999998 666665566889999975 44  12111111


Q ss_pred             ----CcceEEEEecCCCCCEEEE----EeC-------------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc
Q 046899          239 ----NADIHCVDWNPHDVNLILT----GSA-------------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS  297 (407)
Q Consensus       239 ----~~~v~~l~~~~~~~~~l~t----g~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~  297 (407)
                          ...++.++++| ++++.++    |..             .+.|..+|...      ++.....  .......++|+
T Consensus       126 ~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~------g~~~~~~--~~~~p~gl~~s  196 (305)
T 3dr2_A          126 AGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG------SPLQRMA--DLDHPNGLAFS  196 (305)
T ss_dssp             TTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS------CCCEEEE--EESSEEEEEEC
T ss_pred             CCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC------CcEEEEe--cCCCCcceEEc
Confidence                13467899999 8888886    432             25677888765      4433322  33467899999


Q ss_pred             CCCCCEEEEeeC-----CCeEEEEeCCCC
Q 046899          298 PDKSSVFGSSAE-----DGILNIWDHEKI  321 (407)
Q Consensus       298 ~~~~~ll~s~~~-----d~~i~vwd~~~~  321 (407)
                      |+++.|+++.+.     .+.|.+||+...
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            999977655443     278999998754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.82  E-value=2.2e-07  Score=79.38  Aligned_cols=207  Identities=7%  Similarity=-0.004  Sum_probs=137.4

Q ss_pred             eeeEEEeeCCCc--eEEEEEeCCCCeEEEEeeC--CCcEEEEeCcCCCCcccccCcCCCCCCCCCc-EEEEecccccccc
Q 046899           74 VKKFKTIIHPGE--VNRIRELPQNSKIVATHTD--SPDVLIWDVEAQPNRHAVLGAADSHPDLDQS-VVLWSIQDHVSAL  148 (407)
Q Consensus        74 ~~~~~~~~h~~~--v~~l~~~~~~~~~l~tg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~-i~~w~~~~~~~~~  148 (407)
                      .+....+.|...  ...|.|+| ++.+.++.+.  ++.|++.|..+++....+.......    +. +.+          
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f----geGi~~----------   73 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF----GEGLTL----------   73 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC----EEEEEE----------
T ss_pred             ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc----eEEEEE----------
Confidence            345666778864  68999998 5777666553  5799999999988766543211110    00 000          


Q ss_pred             ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 046899          149 AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS  228 (407)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  228 (407)
                                 .+  .....+.-.++.+.++|..+++.+.++......  ...+++++..++ .+..++.|.++|..+.+
T Consensus        74 -----------~g--~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~-vs~gs~~l~viD~~t~~  137 (266)
T 2iwa_A           74 -----------LN--EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILY-GSDGTSILYEIDPHTFK  137 (266)
T ss_dssp             -----------ET--TEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEE-EECSSSEEEEECTTTCC
T ss_pred             -----------eC--CEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEE-EECCCCeEEEEECCCCc
Confidence                       01  012233445667778888888888877532121  123445664445 44568899999998877


Q ss_pred             CCceeeec--ccCc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-------------CCC
Q 046899          229 TPAVKVEK--AHNA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-------------SAA  290 (407)
Q Consensus       229 ~~~~~~~~--~~~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------------~~~  290 (407)
                        ....+.  ....   .++.+.|.  ++.+.+....++.|.+.|..+      ++.+..+...             ...
T Consensus       138 --v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~t------g~V~~~I~~~g~~~~~~~~~~~~~~v  207 (266)
T 2iwa_A          138 --LIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKD------GTLLGWILLPNLRKKLIDEGFRDIDV  207 (266)
T ss_dssp             --EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTT------CCEEEEEECHHHHHHHHHTTCTTCCC
T ss_pred             --EEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCC------CcEEEEEECCCcccccccccccccCc
Confidence              333332  1222   36678887  456666665688999999999      8888877632             135


Q ss_pred             EEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          291 VLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       291 v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      .+.|+|+|+++.+|+++...+.+.+.++...
T Consensus       208 ~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          208 LNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             eEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            6899999999999999999999999998764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.80  E-value=1.9e-06  Score=76.85  Aligned_cols=112  Identities=13%  Similarity=0.216  Sum_probs=79.4

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CC-CCC---ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR--SG-STP---AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~-~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      .+....+.++|+|++..++++.+.++.|.+||+.  ++ ...   ....+.........+++++ ++++.++...++.|.
T Consensus       176 ~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          176 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVD  254 (326)
T ss_dssp             EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEE
T ss_pred             CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEE
Confidence            3344678999999994445565667899999986  44 311   1112222345567899999 788777766678899


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEEEEEc-CCCCCEEEEeeCCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS-PDKSSVFGSSAEDG  311 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~ll~s~~~d~  311 (407)
                      +||. .      ++.+..+..+...+++++|+ +++..|+++...++
T Consensus       255 ~~d~-~------g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          255 RYDT-D------GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             EECT-T------CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             EECC-C------CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            9998 4      57777777777789999998 88887876665553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.78  E-value=1.5e-08  Score=101.26  Aligned_cols=121  Identities=9%  Similarity=0.050  Sum_probs=79.3

Q ss_pred             cccCEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc----
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS----  263 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~----  263 (407)
                      |...+..++|+|+| ++|+.++.+     ..|++||+.+++  .... ..+...+..++|+| | +.|+.++.++.    
T Consensus       161 ~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~--~~~~-~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          161 GATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGK--PLAD-ELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             --EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCC--EEEE-EEEEEESCCCEEST-T-SEEEEEECCCC----
T ss_pred             CCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCC--CCCc-cCCCceeccEEEEC-C-CEEEEEEecCccccc
Confidence            33467899999999 666655443     359999999887  3222 12222235789999 7 88877776554    


Q ss_pred             ----------EEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC----CCeEEEEeCCCC
Q 046899          264 ----------IHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE----DGILNIWDHEKI  321 (407)
Q Consensus       264 ----------i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~----d~~i~vwd~~~~  321 (407)
                                |++|++.+....  ...+.....+...+..+.|+|||++|+.++..    ...|.+||+.++
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~--~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSA--DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGG--CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             ccccCCCCCEEEEEECCCCchh--CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence                      889998762100  01233333344468999999999987644432    348999999875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.77  E-value=2.9e-10  Score=103.57  Aligned_cols=179  Identities=8%  Similarity=-0.028  Sum_probs=93.5

Q ss_pred             ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc-ceE-
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA-DIH-  243 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~-  243 (407)
                      .+.+++.++.+..||..+++.+-.+..  +.+.+..+..++ .++++++.||.|+.||..+++  .......+.. .+. 
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~--~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNE--GLTKLPFTIPELVQA   85 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----C--CSEECSCCHHHHHTT
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCc--eeeeeeccCcccccc
Confidence            456677788899999999998877765  445555555666 577788899999999998887  3333322211 110 


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      +..+.  .+..+++|+.|+.|+.||.++      ++.+..+..+.    ...++|++..+ ++++.|+.|+.||.++++.
T Consensus        86 sp~~~--~~~~v~~g~~dg~v~a~D~~t------G~~~w~~~~~~----~~~~~p~~~~v-~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           86 SPCRS--SDGILYMGKKQDIWYVIDLLT------GEKQQTLSSAF----ADSLSPSTSLL-YLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC--------------------------------E-EEEEEEEEEECCCSSSSSC
T ss_pred             CceEe--cCCEEEEEeCCCEEEEEECCC------CcEEEEecCCC----cccccccCCEE-EEEecCCEEEEEECCCCCE
Confidence            01111  235677888899999999998      88887776543    24556777756 4788899999999999876


Q ss_pred             ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          324 KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       324 ~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +-.+....  ...+.++.+.               .....++.++.++.|+.||..
T Consensus       153 ~W~~~~~~--~~~~~~~~~~---------------~~~~~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          153 RWNATYFD--YAASLPEDDV---------------DYKMSHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             CCEEEEEE--ECCBCCCCCT---------------TCCCCEEEEETSCEEEEECTT
T ss_pred             EEeEeccc--ccCccccCCc---------------cccceEEEECCCCEEEEEECC
Confidence            65543211  1122222210               012456677778888888876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.76  E-value=3.3e-08  Score=91.21  Aligned_cols=142  Identities=9%  Similarity=0.030  Sum_probs=94.8

Q ss_pred             ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCCCceeee----cccC
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS--CLILWDARSGSTPAVKVE----KAHN  239 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~----~~~~  239 (407)
                      .+++...++.|+.||...+........ ..... ++|+|++ ..|+++..++  .|.++|......  ....    ....
T Consensus       144 lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~~~  218 (409)
T 3hrp_A          144 VLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGSTFS  218 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTTSC
T ss_pred             EEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCce--eEEeeeccchhc
Confidence            345555667888888877665444433 22233 9999999 6777777655  799999876552  2222    2144


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-----cCCCCCE--EEEEEcCCCCCEEEEeeCCCe
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-----EGHSAAV--LCVQWSPDKSSVFGSSAEDGI  312 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~h~~~v--~~v~~~~~~~~ll~s~~~d~~  312 (407)
                      ..+.+++++| +...|+.+..++.|+.||...      .. ...+     .++...-  ..++|+|++..|+++-..++.
T Consensus       219 ~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~------~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~  290 (409)
T 3hrp_A          219 GKIGAVALDE-TEEWLYFVDSNKNFGRFNVKT------QE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS  290 (409)
T ss_dssp             SCCCBCEECT-TSSEEEEECTTCEEEEEETTT------CC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred             CCcEEEEEeC-CCCeEEEEECCCcEEEEECCC------CC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence            5678899999 445555577788999999986      33 2222     1222222  399999976668878888899


Q ss_pred             EEEEeCCC
Q 046899          313 LNIWDHEK  320 (407)
Q Consensus       313 i~vwd~~~  320 (407)
                      |+.|+...
T Consensus       291 I~~~~~~g  298 (409)
T 3hrp_A          291 VYKITPDG  298 (409)
T ss_dssp             EEEECTTC
T ss_pred             EEEEecCC
Confidence            99999764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.76  E-value=2.8e-07  Score=83.14  Aligned_cols=227  Identities=9%  Similarity=-0.043  Sum_probs=131.6

Q ss_pred             EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCc--C-----------CCCCCC----------CC
Q 046899           88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGA--A-----------DSHPDL----------DQ  134 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~--~-----------~~~~~~----------d~  134 (407)
                      .+.++| +++.+..+.          .++.|.+||..+.+....+...  .           ...++.          ..
T Consensus        69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~  147 (368)
T 1mda_H           69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence            799999 666666664          3678999999999877766422  0           011111          12


Q ss_pred             cEEE--EeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCC-----cCcee----eEeecccCEEEEEEC
Q 046899          135 SVVL--WSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS-----IGARG----KYLGHEDTVEDVQFC  203 (407)
Q Consensus       135 ~i~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~----~~~~~~~~v~~l~~~  203 (407)
                      .+.+  +|..+ ...+.. +.+....+.+.  ..+.+.+.++.+.+.+...     ++...    .+.-...+.   . .
T Consensus       148 ~v~V~~iD~~t-v~~i~v-~~~~~~~p~g~--~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~  219 (368)
T 1mda_H          148 AAGLSVPGASD-DQLTKS-ASCFHIHPGAA--ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A  219 (368)
T ss_dssp             EEEEEETTTEE-EEEEEC-SSCCCCEEEET--TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred             eEEEEEEchhh-ceEEEC-CCceEEccCCC--eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence            3444  44443 111111 11111112221  1233455666666666654     32221    111122333   3 4


Q ss_pred             CCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc-------c---CcceEEEEecCCCCCEEEEEeC---------CCcE
Q 046899          204 PSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA-------H---NADIHCVDWNPHDVNLILTGSA---------DNSI  264 (407)
Q Consensus       204 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~---~~~v~~l~~~~~~~~~l~tg~~---------dg~i  264 (407)
                      +++.. ++..+. +.|.+.|+..........+..       +   ......+.++| +++.++.+..         ++.+
T Consensus       220 ~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~~  296 (368)
T 1mda_H          220 NYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             TTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEE
T ss_pred             ccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCcccccCCCE
Confidence            55534 444445 899999987543111111110       1   11112268999 7776665432         2356


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCCCCcccccccCCCc
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEKIGEKQDYGELKYP  333 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~  333 (407)
                      .++|+.+      .+.+.++.... ....++|+|+|++++++.. .+++|.++|+.+++.+.++.....|
T Consensus       297 ~ViD~~t------~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P  359 (368)
T 1mda_H          297 SSVTASV------GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP  359 (368)
T ss_dssp             EEEESSS------CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred             EEEECCC------CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence            6999999      78888887543 6899999999998888888 6999999999999988888765543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.75  E-value=2.2e-06  Score=75.03  Aligned_cols=220  Identities=8%  Similarity=-0.030  Sum_probs=127.5

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc-ccCcCCCC------CCC--------CCcEEEEecccccc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-VLGAADSH------PDL--------DQSVVLWSIQDHVS  146 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-~~~~~~~~------~~~--------d~~i~~w~~~~~~~  146 (407)
                      +...+.+|++.+ ++++.++...++.|..+|.. ++.... ........      ++.        ++.+..++......
T Consensus        60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~  137 (300)
T 2qc5_A           60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY  137 (300)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEE
Confidence            346789999887 77888777767889999987 433211 11000000      000        34455555542221


Q ss_pred             ccccC--CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe--ecccCEEEEEECCCCCcEEEEEeCCCcEEEE
Q 046899          147 ALAAE--PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL--GHEDTVEDVQFCPSSAQEFCSVGDDSCLILW  222 (407)
Q Consensus       147 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  222 (407)
                      .+...  ......+.........++...++.+..++. .++... +.  .+...+..+++.+++ +++++....+.|..|
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~  214 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRI  214 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEE
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEE
Confidence            11111  111111222222223333444566777776 444332 22  234568899999988 777776677889999


Q ss_pred             EcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCce-eeecCCCCCEEEEEEcCCCC
Q 046899          223 DARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPI-HKFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       223 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~  301 (407)
                      |. ++.. ...........+.++++++ ++++.++...++.|..||..       +... ..+......+.++++.++|.
T Consensus       215 ~~-~g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~i~~~~~g~  284 (300)
T 2qc5_A          215 TT-TGEI-SEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITND-------NTIQEYQLQTENAEPHGITFGKDGS  284 (300)
T ss_dssp             CT-TCCE-EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-------SCEEEEECCSTTCCCCCEEECTTSC
T ss_pred             cC-CCcE-EEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECCC-------CcEEEEECCccCCccceeEeCCCCC
Confidence            98 4441 1222233456688999999 78877776667899999984       3322 22333445689999999988


Q ss_pred             CEEEEeeCCCeEEEEeCC
Q 046899          302 SVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~  319 (407)
                       |+++.. . .|..+|.+
T Consensus       285 -l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          285 -VWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             -EEEECS-S-EEEEEEEC
T ss_pred             -EEEEcc-C-ceEEeCCC
Confidence             554444 4 77777653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.74  E-value=8e-07  Score=79.95  Aligned_cols=117  Identities=11%  Similarity=0.080  Sum_probs=76.6

Q ss_pred             cccCEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCCCCCCceeeecc------cCcceEEEEecCCCCCEEEEEe--
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGD-----DSCLILWDARSGSTPAVKVEKA------HNADIHCVDWNPHDVNLILTGS--  259 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~l~tg~--  259 (407)
                      +...+..+++++++ +++++-..     ++.|.+||+.+++  ....+..      +...+..+++++.++..+++..  
T Consensus        65 ~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           65 TFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred             ceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence            45678999999998 66665543     5789999998876  3333321      2245688999983444455554  


Q ss_pred             -CCCcEEEEeCCCCCCCCCCCceeeecCC-----------------------------CCCEEEEEEcCCCCCEEEEeeC
Q 046899          260 -ADNSIHMFDRRKLTSDGVGSPIHKFEGH-----------------------------SAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       260 -~dg~i~vwd~~~~~~~~~~~~~~~~~~h-----------------------------~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                       .++.|.+||+.+      ++..+.+..|                             ...+..|+|+|+++.|+++...
T Consensus       142 ~~~~~i~v~d~~~------g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          142 DDKAALIRVDLQT------GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             GGGCEEEEEETTT------CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS
T ss_pred             CCCCeEEEEECCC------CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC
Confidence             578999999876      4444433221                             1236889999999877644444


Q ss_pred             CCeEEEEeC
Q 046899          310 DGILNIWDH  318 (407)
Q Consensus       310 d~~i~vwd~  318 (407)
                      ...+..++.
T Consensus       216 ~~~l~~~~~  224 (343)
T 2qe8_A          216 STSMYRIKS  224 (343)
T ss_dssp             CSEEEEEEH
T ss_pred             CCeEEEEEH
Confidence            445555553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.71  E-value=2.2e-07  Score=85.35  Aligned_cols=228  Identities=10%  Similarity=0.038  Sum_probs=131.6

Q ss_pred             EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCc-------------CCCCCCC----------CC
Q 046899           88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGA-------------ADSHPDL----------DQ  134 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~~~----------d~  134 (407)
                      .+.++| +++.|..+.          .++.|.++|..+.+....+...             ....++.          ++
T Consensus       122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~  200 (426)
T 3c75_H          122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP  200 (426)
T ss_dssp             EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred             ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence            899999 666665554          3678999999998776554321             0111111          34


Q ss_pred             cEEEEeccccccccccCCCC-CcccccCCCCCccccccCCCCCCCCCCCCcCceee----EeecccCE-EEEEECCCCCc
Q 046899          135 SVVLWSIQDHVSALAAEPGS-AKSTASGGANSKNASKSGGNGDKPLESPSIGARGK----YLGHEDTV-EDVQFCPSSAQ  208 (407)
Q Consensus       135 ~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~----~~~~~~~v-~~l~~~~~~~~  208 (407)
                      .|.+.|+.+....-...... ....+.+.  ..+++.+.+|.+.+.+...++....    +.....++ ..+.+.+++ .
T Consensus       201 ~VsVID~~t~kvv~~I~v~g~~~~~p~g~--~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~  277 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVPDCYHIFPASP--TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS-G  277 (426)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEET--TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT-C
T ss_pred             eEEEEECCCCeEEEEEEcCCceeeccCCC--cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC-C
Confidence            56666666543211111111 01111121  2233444566655555544433311    11111111 134678887 4


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCceeeec-------c---cCcceEEEEecCCCCCEEEEEeC----------CCcEEEEe
Q 046899          209 EFCSVGDDSCLILWDARSGSTPAVKVEK-------A---HNADIHCVDWNPHDVNLILTGSA----------DNSIHMFD  268 (407)
Q Consensus       209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~---~~~~v~~l~~~~~~~~~l~tg~~----------dg~i~vwd  268 (407)
                      .++..+..+.|.+.|+..........+.       .   .......+.++| ++..+++...          ++.|.++|
T Consensus       278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~~VsVID  356 (426)
T 3c75_H          278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASRFVVVLN  356 (426)
T ss_dssp             EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCCCEEEEEE
Confidence            4445567889999998755411111100       0   111222368899 6666555432          35799999


Q ss_pred             CCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC-CEEEEeeCCCeEEEEeCCCCCccccc
Q 046899          269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGILNIWDHEKIGEKQDY  327 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~ll~s~~~d~~i~vwd~~~~~~~~~~  327 (407)
                      ..+      .+.+.++... .....++|+|+|+ .++++...++.|.++|+.+.+.+.++
T Consensus       357 ~~T------~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          357 AET------GERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTT------CCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCC------CeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999      8888888642 3579999999999 66655546999999999999988876

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.70  E-value=6e-07  Score=79.27  Aligned_cols=130  Identities=8%  Similarity=0.048  Sum_probs=81.7

Q ss_pred             CEEEEEECCCCCcEEEE----EeC-------------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899          196 TVEDVQFCPSSAQEFCS----VGD-------------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                      .++.+++.|+| +++++    |..             .+.|..+|..+++.  ... . .....+.++|+| +++.|+.+
T Consensus       132 ~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~-~-~~~~p~gl~~sp-dg~~lyv~  205 (305)
T 3dr2_A          132 SPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRM-A-DLDHPNGLAFSP-DEQTLYVS  205 (305)
T ss_dssp             CCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEE-E-EESSEEEEEECT-TSSEEEEE
T ss_pred             CCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEE-e-cCCCCcceEEcC-CCCEEEEE
Confidence            45678899988 66665    332             25677777766652  222 2 334568899999 88877777


Q ss_pred             eCC------CcEEEEeCCCCCCCCCCCc--eeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          259 SAD------NSIHMFDRRKLTSDGVGSP--IHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       259 ~~d------g~i~vwd~~~~~~~~~~~~--~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                      ...      +.|.+||+..      ...  ...+ .........++++++|. |+ .+..+ .|.+||.. ++.+..+..
T Consensus       206 ~~~~~~~~~~~i~~~~~~~------~~l~~~~~~~~~~~~~pdgi~~d~~G~-lw-v~~~~-gv~~~~~~-g~~~~~~~~  275 (305)
T 3dr2_A          206 QTPEQGHGSVEITAFAWRD------GALHDRRHFASVPDGLPDGFCVDRGGW-LW-SSSGT-GVCVFDSD-GQLLGHIPT  275 (305)
T ss_dssp             ECCC---CCCEEEEEEEET------TEEEEEEEEECCSSSCCCSEEECTTSC-EE-ECCSS-EEEEECTT-SCEEEEEEC
T ss_pred             ecCCcCCCCCEEEEEEecC------CCccCCeEEEECCCCCCCeEEECCCCC-EE-EecCC-cEEEECCC-CCEEEEEEC
Confidence            665      7899999875      221  1111 11234456789999998 55 34444 49999984 455555544


Q ss_pred             CCCcccCCCCcCc
Q 046899          330 LKYPIIHPAYSSD  342 (407)
Q Consensus       330 ~~~~v~~~~~s~d  342 (407)
                      .. .+..++|+++
T Consensus       276 ~~-~~~~~~f~~d  287 (305)
T 3dr2_A          276 PG-TASNCTFDQA  287 (305)
T ss_dssp             SS-CCCEEEECTT
T ss_pred             CC-ceeEEEEeCC
Confidence            33 3556666654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.69  E-value=8e-08  Score=94.46  Aligned_cols=187  Identities=12%  Similarity=0.101  Sum_probs=119.8

Q ss_pred             CCCCCCCCCCCcCceeeEeeccc--------------------------------CEEEEEECCCCCcEEEEEeCCC---
Q 046899          173 GNGDKPLESPSIGARGKYLGHED--------------------------------TVEDVQFCPSSAQEFCSVGDDS---  217 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~~~~~--------------------------------~v~~l~~~~~~~~~l~s~~~dg---  217 (407)
                      ++.+..+|..+++.+-.+.....                                ....++++|++ .+++.++.++   
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w  267 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPW  267 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESS
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccc
Confidence            67888899999988766543211                                11256788887 6777776654   


Q ss_pred             ----------------cEEEEEcCCCCCCceeeecc--cC-------cceEEEEecCCCC---CEEEEEeCCCcEEEEeC
Q 046899          218 ----------------CLILWDARSGSTPAVKVEKA--HN-------ADIHCVDWNPHDV---NLILTGSADNSIHMFDR  269 (407)
Q Consensus       218 ----------------~i~iwd~~~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~---~~l~tg~~dg~i~vwd~  269 (407)
                                      .|..+|.++++  ....++.  |.       .....+.... ++   ..++.++.+|.++++|.
T Consensus       268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~  344 (677)
T 1kb0_A          268 SHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDR  344 (677)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEET
T ss_pred             cCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEEC
Confidence                            59999999998  4444332  21       1222333334 55   68899999999999999


Q ss_pred             CCCCCCCCCCceeeecCCC-----------CCE------------------------EEEEEcCCCCCEEEEee------
Q 046899          270 RKLTSDGVGSPIHKFEGHS-----------AAV------------------------LCVQWSPDKSSVFGSSA------  308 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~-----------~~v------------------------~~v~~~~~~~~ll~s~~------  308 (407)
                      ++      ++++..+....           .++                        ..++++|++..+++...      
T Consensus       345 ~t------G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~  418 (677)
T 1kb0_A          345 TN------GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNL  418 (677)
T ss_dssp             TT------CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEE
T ss_pred             CC------CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceee
Confidence            98      88776654211           111                        15688888875653322      


Q ss_pred             ------------------------------------CCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcccccee
Q 046899          309 ------------------------------------EDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLT  352 (407)
Q Consensus       309 ------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  352 (407)
                                                          ..+.|..||+.+++.+-.+.. ..++.+..++.+          
T Consensus       419 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~----------  487 (677)
T 1kb0_A          419 MDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTA----------  487 (677)
T ss_dssp             EECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEET----------
T ss_pred             ecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeC----------
Confidence                                                127788999988776544432 223233222222          


Q ss_pred             eeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          353 SIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       353 ~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                              +..++.++.|+.+++||..      +++++.++.
T Consensus       488 --------g~~v~~g~~dg~l~a~D~~------tG~~lw~~~  515 (677)
T 1kb0_A          488 --------GNVVFQGTADGRLVAYHAA------TGEKLWEAP  515 (677)
T ss_dssp             --------TTEEEEECTTSEEEEEETT------TCCEEEEEE
T ss_pred             --------CCEEEEECCCCcEEEEECC------CCceeeeee
Confidence                    5577788899999999998      676665554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.68  E-value=1.8e-07  Score=92.11  Aligned_cols=174  Identities=10%  Similarity=0.049  Sum_probs=99.7

Q ss_pred             EEEEeeCCCcEEEEeCcCCCCcccccCcCC----------CC---C----------CCCCcEEEEeccccccccccCCC-
Q 046899           98 IVATHTDSPDVLIWDVEAQPNRHAVLGAAD----------SH---P----------DLDQSVVLWSIQDHVSALAAEPG-  153 (407)
Q Consensus        98 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~----------~~---~----------~~d~~i~~w~~~~~~~~~~~~~~-  153 (407)
                      .|..++.++.|..+|..+++.+-.......          ..   +          ..|+.+..+|..++......... 
T Consensus        72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~  151 (689)
T 1yiq_A           72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA  151 (689)
T ss_dssp             EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcC
Confidence            455556677888888887765433321110          00   0          01778888888776543222111 


Q ss_pred             ------CCcccccCCCCCcccccc------CCCCCCCCCCCCcCceeeEeec----------------------------
Q 046899          154 ------SAKSTASGGANSKNASKS------GGNGDKPLESPSIGARGKYLGH----------------------------  193 (407)
Q Consensus       154 ------~~~~~~~~~~~~~~~~~~------~~~~i~i~d~~~~~~~~~~~~~----------------------------  193 (407)
                            .....+.- ....+..+.      .++.+..+|..+++.+-.+...                            
T Consensus       152 ~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~  230 (689)
T 1yiq_A          152 DHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQ  230 (689)
T ss_dssp             CTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHH
T ss_pred             CCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeec
Confidence                  01111100 011122222      3678888999998877555410                            


Q ss_pred             ---ccCEEEEEECCCCCcEEEEEeCCCc-------------------EEEEEcCCCCCCceeeecc--cC-------cce
Q 046899          194 ---EDTVEDVQFCPSSAQEFCSVGDDSC-------------------LILWDARSGSTPAVKVEKA--HN-------ADI  242 (407)
Q Consensus       194 ---~~~v~~l~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~--~~-------~~v  242 (407)
                         ...-..++++|+. .+++.++.++.                   |..+|.++++  ....++.  |.       .++
T Consensus       231 ~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          231 GGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE--YVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             CEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC--EEEEEESSTTCCSCCCCCSCE
T ss_pred             CCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc--eeEeeecCCcccccccCCCCc
Confidence               0011257788877 67888887764                   9999999998  4444432  21       122


Q ss_pred             EEEEecCCCCC---EEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899          243 HCVDWNPHDVN---LILTGSADNSIHMFDRRKLTSDGVGSPIH  282 (407)
Q Consensus       243 ~~l~~~~~~~~---~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  282 (407)
                      ....... ++.   .++.++.+|.++++|.++      ++++.
T Consensus       308 ~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~l~  343 (689)
T 1yiq_A          308 ILAELPI-DGKPRKVLMQAPKNGFFYVIDRAT------GELLS  343 (689)
T ss_dssp             EEEEEEE-TTEEEEEEEECCTTSEEEEEETTT------CCEEE
T ss_pred             EEEeecc-CCcEEEEEEEECCCCeEEEEECCC------CCEec
Confidence            2222222 444   788999999999999998      77764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.67  E-value=3.2e-08  Score=90.09  Aligned_cols=208  Identities=7%  Similarity=-0.031  Sum_probs=107.3

Q ss_pred             CCeEEEEeeCCCcEEEEeCcCCCCcccccCc-CCCCC-----------CCCCcEEEEeccccccccccCCCC---Ccccc
Q 046899           95 NSKIVATHTDSPDVLIWDVEAQPNRHAVLGA-ADSHP-----------DLDQSVVLWSIQDHVSALAAEPGS---AKSTA  159 (407)
Q Consensus        95 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~-----------~~d~~i~~w~~~~~~~~~~~~~~~---~~~~~  159 (407)
                      ++..+++++.||.|..||..+++.+-.+... ....+           ..|+.+..||..++..........   ....+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp   87 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP   87 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence            4567888999999999999988765443321 00000           117889999987654322211110   00011


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                      .-..+..+.+++.++.+..||..+++.+..+..+.    ...++|.+ ..+++++.|+.|+.||.++++.  ...+..+.
T Consensus        88 ~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~--~W~~~~~~  160 (369)
T 2hz6_A           88 CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTREL--RWNATYFD  160 (369)
T ss_dssp             CC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSC--CCEEEEEE
T ss_pred             eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCCE--EEeEeccc
Confidence            10022345667788999999999999877766543    23456666 6788889999999999999873  33322111


Q ss_pred             cceEEEEecCCCC---CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEE-EEEEcCCCCCEE----EEeeCCC
Q 046899          240 ADIHCVDWNPHDV---NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL-CVQWSPDKSSVF----GSSAEDG  311 (407)
Q Consensus       240 ~~v~~l~~~~~~~---~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~ll----~s~~~d~  311 (407)
                        .....+++ +.   ..+++++.||.|+.||.++      ++.+.++... .++. ...+++++. +.    +.+  ++
T Consensus       161 --~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~t------G~~~W~~~~~-~pv~~~~~~~~dg~-~~v~~~~~~--~~  227 (369)
T 2hz6_A          161 --YAASLPED-DVDYKMSHFVSNGDGLVVTVDSES------GDVLWIQNYA-SPVVAFYVWQREGL-RKVMHINVA--VE  227 (369)
T ss_dssp             --ECCBCCCC-CTTCCCCEEEEETSCEEEEECTTT------CCEEEEEECS-SCEEEEEECTTSSC-EEECCEEEE--HH
T ss_pred             --ccCccccC-CccccceEEEECCCCEEEEEECCC------CcEEEEecCC-CceEEEEEecCCce-Eeccceeec--cc
Confidence              12223333 21   4567788999999999998      8888877643 4443 345555653 21    112  34


Q ss_pred             eEEEEeCCCCC
Q 046899          312 ILNIWDHEKIG  322 (407)
Q Consensus       312 ~i~vwd~~~~~  322 (407)
                      .+..+|..+++
T Consensus       228 ~l~~ld~~tG~  238 (369)
T 2hz6_A          228 TLRYLTFMSGE  238 (369)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ceeeeehhcCC
Confidence            56666665544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.65  E-value=2.1e-07  Score=83.83  Aligned_cols=123  Identities=11%  Similarity=0.087  Sum_probs=76.4

Q ss_pred             cCEEEEEECCCCCcEEEEEe---CCCcEEEEEcCCCCCCceeeeccc-----------------------------Ccce
Q 046899          195 DTVEDVQFCPSSAQEFCSVG---DDSCLILWDARSGSTPAVKVEKAH-----------------------------NADI  242 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~v  242 (407)
                      ..+..++++|++...+++..   .++.|.+||+.+++  .......|                             ...+
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~  197 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGV  197 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCE
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceeccc
Confidence            34578888876535666665   67899999998765  23322221                             1236


Q ss_pred             EEEEecCCCCCEEEEEeCCC-cEEEEeCCCCCCC--CCCCcee--eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          243 HCVDWNPHDVNLILTGSADN-SIHMFDRRKLTSD--GVGSPIH--KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg-~i~vwd~~~~~~~--~~~~~~~--~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      ..|+|+| +++.|+.+..++ .+..++.......  ...+...  ...++......++++++|. |+++...++.|.+||
T Consensus       198 ~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          198 NGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVIT  275 (343)
T ss_dssp             EEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEE
T ss_pred             ceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEE
Confidence            8899999 888888877666 5555553210000  0000000  1112344567899999987 677888899999999


Q ss_pred             CCCC
Q 046899          318 HEKI  321 (407)
Q Consensus       318 ~~~~  321 (407)
                      ..++
T Consensus       276 ~~~G  279 (343)
T 2qe8_A          276 SADR  279 (343)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            8444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.64  E-value=2.8e-06  Score=77.35  Aligned_cols=245  Identities=10%  Similarity=-0.013  Sum_probs=142.3

Q ss_pred             eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCC--CC----------CCCcEEEEeccccccccccCCCCCcc-----cc
Q 046899           97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSH--PD----------LDQSVVLWSIQDHVSALAAEPGSAKS-----TA  159 (407)
Q Consensus        97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~----------~d~~i~~w~~~~~~~~~~~~~~~~~~-----~~  159 (407)
                      ..+..++.++.|..+|..+++.+-.........  +.          .++.+..+|..++.............     ..
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~  183 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA  183 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence            456677888999999999887653332221111  10          16778888877664332221111000     00


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceeeEeecccC----EE---EEEECC--CCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDT----VE---DVQFCP--SSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----v~---~l~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      .......+..+..++.+..+|..+++.+-........    +.   .+.-.|  .+ ..++.++.++.+..+|.++++  
T Consensus       184 ~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG~--  260 (376)
T 3q7m_A          184 PTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSGQ--  260 (376)
T ss_dssp             CEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEEEEETTTCC--
T ss_pred             cEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCCc--
Confidence            0001233555677888888998888876555422110    00   011111  13 467777889999999999888  


Q ss_pred             ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-CCCCEEEEEEcCCCCCEEEEeeC
Q 046899          231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                      ......  ......+..   ++..++.++.++.+..+|.++      ++.+..... ....+...... + ..|+ .++.
T Consensus       261 ~~w~~~--~~~~~~~~~---~~~~l~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~-~-~~l~-v~~~  326 (376)
T 3q7m_A          261 IMWKRE--LGSVNDFIV---DGNRIYLVDQNDRVMALTIDG------GVTLWTQSDLLHRLLTSPVLY-N-GNLV-VGDS  326 (376)
T ss_dssp             EEEEEC--CCCEEEEEE---ETTEEEEEETTCCEEEEETTT------CCEEEEECTTTTSCCCCCEEE-T-TEEE-EECT
T ss_pred             EEeecc--CCCCCCceE---ECCEEEEEcCCCeEEEEECCC------CcEEEeecccCCCcccCCEEE-C-CEEE-EEeC
Confidence            343332  223344444   345777788899999999998      777766652 22222223332 3 3354 7788


Q ss_pred             CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899          310 DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR  377 (407)
Q Consensus       310 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd  377 (407)
                      +|.+.++|..+++.+..+......+.....                .   .++.|+.++.+|.|+.|+
T Consensus       327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~----------------~---~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPV----------------A---ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCTTCBCSCCE----------------E---ETTEEEEEBTTSCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCcceeCCE----------------E---ECCEEEEEeCCCEEEEEe
Confidence            999999999998776555433332222111                1   155778888888888886

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.62  E-value=1.7e-06  Score=78.76  Aligned_cols=142  Identities=15%  Similarity=0.085  Sum_probs=95.4

Q ss_pred             cCCCCCCCCCCCCcCceeeEeeccc---CEEEEEECCCCCcEEEEEe-------------------CCCcEEEEEcCCCC
Q 046899          171 SGGNGDKPLESPSIGARGKYLGHED---TVEDVQFCPSSAQEFCSVG-------------------DDSCLILWDARSGS  228 (407)
Q Consensus       171 ~~~~~i~i~d~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~  228 (407)
                      ...+.+.++|..+++.+.++.....   .-..+.|+|++ +.+++..                   .+.+|.+||+.+++
T Consensus       161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k  239 (462)
T 2ece_A          161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK  239 (462)
T ss_dssp             CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred             CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence            4457888999999998888863222   23457889999 6777774                   36899999999865


Q ss_pred             CCceeeecc--cCcceEEEEe--cCCCCCEEEEEe------CCCcEEEEeCCCCCCCCCCCceeee--cC----------
Q 046899          229 TPAVKVEKA--HNADIHCVDW--NPHDVNLILTGS------ADNSIHMFDRRKLTSDGVGSPIHKF--EG----------  286 (407)
Q Consensus       229 ~~~~~~~~~--~~~~v~~l~~--~~~~~~~l~tg~------~dg~i~vwd~~~~~~~~~~~~~~~~--~~----------  286 (407)
                        ....+..  .......+.|  +| +++++++++      .++.|.+|.... .   ..+....+  ..          
T Consensus       240 --~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~-g---~~~~~~vIdi~~~~v~~~lp~~  312 (462)
T 2ece_A          240 --RIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYED-G---KWNAEKVIEIPAEPLEGNLPEI  312 (462)
T ss_dssp             --EEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEET-T---EEEEEEEEEECCEECCSSCCGG
T ss_pred             --EeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecC-C---ceeEEEEEeCCCcccccccccc
Confidence              4444432  1123445555  99 788777766      456887665432 0   01111111  00          


Q ss_pred             ------CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          287 ------HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       287 ------h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                            -......|.+++||++|+++.-..+.|.++|+..
T Consensus       313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                  0235788999999999999998899999999863

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.61  E-value=1.6e-06  Score=73.15  Aligned_cols=193  Identities=10%  Similarity=0.091  Sum_probs=124.1

Q ss_pred             eeeEEEeeCCCce--EEEEEeCCCCeEEEEeeCCC--cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           74 VKKFKTIIHPGEV--NRIRELPQNSKIVATHTDSP--DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        74 ~~~~~~~~h~~~v--~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      .+..+...|...-  ..|.|+  ++.++.+.+.+|  .|+++|+.+++....+........   .-+.++          
T Consensus        31 ~~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fg---eGit~~----------   95 (262)
T 3nol_A           31 YQIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFG---EGISDW----------   95 (262)
T ss_dssp             EEEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCE---EEEEEE----------
T ss_pred             eEEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccce---eEEEEe----------
Confidence            3455667788665  889887  467888887766  899999999887665432211100   001110          


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST  229 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  229 (407)
                                 +  +......-.++.+.++|..+.+.+.++...... ..++  +++ ..|+.+..++.|.++|..+.+ 
T Consensus        96 -----------g--~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg-~~L~~SdGs~~i~~iDp~T~~-  157 (262)
T 3nol_A           96 -----------K--DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HND-QYLIMSDGTPVLRFLDPESLT-  157 (262)
T ss_dssp             -----------T--TEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCEE--ECS-SCEEECCSSSEEEEECTTTCS-
T ss_pred             -----------C--CEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEEe--cCC-CEEEEECCCCeEEEEcCCCCe-
Confidence                       0  011222335667778888888888888643221 2444  455 344444457889999999877 


Q ss_pred             Cceeeecc--cC---cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC------------CCCEE
Q 046899          230 PAVKVEKA--HN---ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH------------SAAVL  292 (407)
Q Consensus       230 ~~~~~~~~--~~---~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h------------~~~v~  292 (407)
                       ....+..  ..   ..++.+.|.  ++.+.+..-.+..|.+.|.++      ++.+..+...            ....+
T Consensus       158 -v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~t------G~V~~~Id~~~L~~~~~~~~~~~~vlN  228 (262)
T 3nol_A          158 -PVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPET------GKVTGIIDLNGILAEAGPLPSPIDVLN  228 (262)
T ss_dssp             -EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTT------CBEEEEEECTTGGGGSCSCCSSCCCEE
T ss_pred             -EEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCC------CcEEEEEECCcCccccccccCcCCceE
Confidence             3444322  22   334567776  566666665788999999999      8887777542            23579


Q ss_pred             EEEEcCCCCCEEEEee
Q 046899          293 CVQWSPDKSSVFGSSA  308 (407)
Q Consensus       293 ~v~~~~~~~~ll~s~~  308 (407)
                      .|||+|+++.||+||-
T Consensus       229 GIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          229 GIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             EEEEcCCCCEEEEECC
Confidence            9999999998998874

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.61  E-value=7.5e-06  Score=70.62  Aligned_cols=116  Identities=5%  Similarity=-0.096  Sum_probs=79.0

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC---CCcEEEEeCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA---DNSIHMFDRRKL  272 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd~~~~  272 (407)
                      ....++++|++..++++-...+.|.++++....  ..............++++| ++..|+.+..   .+.|..+++.. 
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg-  155 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDG-  155 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTS-
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCC-
Confidence            457899998764677777778899999987543  1222222224568999999 5454444443   36888888764 


Q ss_pred             CCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          273 TSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       273 ~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                            .....+. ..-.....+++++++.+|+++-...+.|.++|+...
T Consensus       156 ------~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          156 ------TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             ------CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             ------CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence                  2223332 223467899999998888888888899999999754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.54  E-value=7e-07  Score=79.54  Aligned_cols=143  Identities=13%  Similarity=0.092  Sum_probs=97.9

Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEE
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHC  244 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  244 (407)
                      ..+..++.++.+..+|.. ++....+..+...+.++...+++ . +..++.++.|..+|.. ++  ...........+.+
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~--~~~~~~~~~~~~~~  181 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GT--EKWRFKTNDAITSA  181 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SC--EEEEEECSSCCCSC
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CC--EeEEEecCCCceee
Confidence            334556667788888877 66665555555556677777777 4 6667788999999988 65  34444444555667


Q ss_pred             EEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          245 VDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       245 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                      +...+ ++.+.+ ++  +.|..+| .+      ++.+..+......+.++...++|. |+ .++.++.+..+|. +++..
T Consensus       182 ~~~d~-~g~l~v-~t--~~l~~~d-~~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~-~g~~~  247 (330)
T 3hxj_A          182 ASIGK-DGTIYF-GS--DKVYAIN-PD------GTEKWNFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP-DGTEK  247 (330)
T ss_dssp             CEECT-TCCEEE-ES--SSEEEEC-TT------SCEEEEECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT-TSCEE
T ss_pred             eEEcC-CCEEEE-Ee--CEEEEEC-CC------CcEEEEEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC-CCCEe
Confidence            77776 666544 44  7899999 55      677777766667788899988886 54 5666788888874 44444


Q ss_pred             ccc
Q 046899          325 QDY  327 (407)
Q Consensus       325 ~~~  327 (407)
                      ..+
T Consensus       248 ~~~  250 (330)
T 3hxj_A          248 WRF  250 (330)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.51  E-value=2.8e-07  Score=91.16  Aligned_cols=178  Identities=13%  Similarity=0.100  Sum_probs=111.2

Q ss_pred             CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC-------------cEEEEEcCCCCCC--ceeeec
Q 046899          172 GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS-------------CLILWDARSGSTP--AVKVEK  236 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg-------------~i~iwd~~~~~~~--~~~~~~  236 (407)
                      ....|+++|+.+++.+.... +......++|+ ++ +.|+.++.+.             .|++|++.+....  .+....
T Consensus       153 ~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~  229 (693)
T 3iuj_A          153 DWREIHLMDVESKQPLETPL-KDVKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI  229 (693)
T ss_dssp             CEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS
T ss_pred             ceEEEEEEECCCCCCCcccc-CCceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC
Confidence            34578889998887654321 11113577899 88 5666666663             4999999876521  222223


Q ss_pred             c-cCcceEEEEecCCCCCEEEEEeC----CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-
Q 046899          237 A-HNADIHCVDWNPHDVNLILTGSA----DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-  310 (407)
Q Consensus       237 ~-~~~~v~~l~~~~~~~~~l~tg~~----dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-  310 (407)
                      . |...+..+.|+| ++++|+....    ...|+++|+....     .....+..+....... |+++|..+++.+..+ 
T Consensus       230 ~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~-----~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~  302 (693)
T 3iuj_A          230 PAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQEN-----APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDA  302 (693)
T ss_dssp             GGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTT-----CCCEEEECSSSSCEEE-EEEETTEEEEEECTTC
T ss_pred             CCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCC-----CceEEEeCCCCceEEE-EeccCCEEEEEECCCC
Confidence            3 455678899999 8887754332    3589999998721     2455666666665555 667777676666554 


Q ss_pred             --CeEEEEeCCCCCc--ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee---eEEEeecc
Q 046899          311 --GILNIWDHEKIGE--KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK---VLEIWRMI  379 (407)
Q Consensus       311 --~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~i~iwd~~  379 (407)
                        +.|..+|+.++..  .+.+..+...+.  .|+++                  ++.|+....+.   .|++|++.
T Consensus       303 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~------------------g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          303 PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG------------------SGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE------------------TTEEEEEEEETTEEEEEEECTT
T ss_pred             CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE------------------CCEEEEEEEECCeeEEEEEECC
Confidence              6899999987654  233433433332  55544                  55566555444   78888875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.49  E-value=7.2e-06  Score=69.24  Aligned_cols=191  Identities=6%  Similarity=-0.042  Sum_probs=125.7

Q ss_pred             eeEEEeeCCCce--EEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCC
Q 046899           75 KKFKTIIHPGEV--NRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEP  152 (407)
Q Consensus        75 ~~~~~~~h~~~v--~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~  152 (407)
                      +..+.+.|...-  ..|.|.  ++.+..+.+.+|.|+++|+.+++....+.....+.   .| +.+              
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~Fg---eG-it~--------------  103 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFA---EG-LAS--------------  103 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCE---EE-EEE--------------
T ss_pred             EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcce---eE-EEE--------------
Confidence            455666787554  788886  46888888999999999999998776551111000   00 000              


Q ss_pred             CCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCce
Q 046899          153 GSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAV  232 (407)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  232 (407)
                             .+  .........++.+.++|..+++.+.++..... -..++  +++ ..|+.+..++.|.++|..+.+  ..
T Consensus       104 -------~g--~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~--v~  168 (268)
T 3nok_A          104 -------DG--ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWN-GKLVRSDGGTMLTFHEPDGFA--LV  168 (268)
T ss_dssp             -------CS--SCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EET-TEEEEECSSSEEEEECTTTCC--EE
T ss_pred             -------eC--CEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCC-CEEEEECCCCEEEEEcCCCCe--EE
Confidence                   00  01122334567778888888888888864322 23444  456 445555568999999999887  34


Q ss_pred             eeec--ccCc---ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-------------CCCEEEE
Q 046899          233 KVEK--AHNA---DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-------------SAAVLCV  294 (407)
Q Consensus       233 ~~~~--~~~~---~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------------~~~v~~v  294 (407)
                      ..+.  .+..   .++.+.|.  ++.+.+..-.+..|.+.|.++      ++.+..+...             ..-.+.|
T Consensus       169 ~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~T------G~V~~~Idl~~L~~~~~~~~~~~~~vlNGI  240 (268)
T 3nok_A          169 GAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPAT------GTVVGVIDASALTRAVAGQVTNPEAVLNGI  240 (268)
T ss_dssp             EEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTT------CBEEEEEECHHHHHHHTTTCCCTTCCEEEE
T ss_pred             EEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCC------CcEEEEEECCCCcccccccccCcCCceEEE
Confidence            4332  2322   34677876  566666655688999999999      8887776531             2467999


Q ss_pred             EEcCCCCCEEEEee
Q 046899          295 QWSPDKSSVFGSSA  308 (407)
Q Consensus       295 ~~~~~~~~ll~s~~  308 (407)
                      ||+|++..||+||-
T Consensus       241 A~dp~~~rlfVTGK  254 (268)
T 3nok_A          241 AVEPGSGRIFMTGK  254 (268)
T ss_dssp             EECTTTCCEEEEET
T ss_pred             EEcCCCCEEEEeCC
Confidence            99999998998874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.48  E-value=2e-06  Score=77.56  Aligned_cols=132  Identities=9%  Similarity=-0.015  Sum_probs=96.2

Q ss_pred             CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe----------CCCcEEEEEcCCCCCCceeeeccc----
Q 046899          173 GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG----------DDSCLILWDARSGSTPAVKVEKAH----  238 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~----  238 (407)
                      ++.+.++|..+++.+..+.....+ . ++++|++ +.+++++          .++.|.+||..+.+  ....+...    
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r  132 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPR  132 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCC
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCCccc
Confidence            467888899999988888765555 4 9999999 4454443          36789999999987  44443211    


Q ss_pred             ---CcceEEEEecCCCCCEEEEEeC--CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          239 ---NADIHCVDWNPHDVNLILTGSA--DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       239 ---~~~v~~l~~~~~~~~~l~tg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                         ......+.++| ++++++++..  ++.|.++|+.+      ++.+.++....  .  ....|.+...|++.+.||++
T Consensus       133 ~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t------~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~  201 (386)
T 3sjl_D          133 FLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEG------KAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSL  201 (386)
T ss_dssp             CCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTT------TEEEEEEECCS--E--EEEEEEETTEEEEEETTSCE
T ss_pred             cccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCC------CcEEEEEECCC--c--ceeecCCCceeEEECCCCCE
Confidence               12456789999 8998888764  68999999999      88888886422  1  22335554455688889999


Q ss_pred             EEEeCCC
Q 046899          314 NIWDHEK  320 (407)
Q Consensus       314 ~vwd~~~  320 (407)
                      -+.++..
T Consensus       202 ~~v~~~~  208 (386)
T 3sjl_D          202 AKVAFGT  208 (386)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            9999986

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.47  E-value=1.6e-06  Score=81.70  Aligned_cols=181  Identities=12%  Similarity=0.099  Sum_probs=119.4

Q ss_pred             ccCCCCCCCCCCCCcCceeeEee-cccCEEEEEE-C-CCCCcEEEEEe------------------CCCcEEEEEcCCCC
Q 046899          170 KSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQF-C-PSSAQEFCSVG------------------DDSCLILWDARSGS  228 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~-~-~~~~~~l~s~~------------------~dg~i~iwd~~~~~  228 (407)
                      ...+..+.+.|+.+++....+.- .......+++ . |++ .++++++                  .++.+.+.|..+.+
T Consensus       108 d~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~  186 (595)
T 1fwx_A          108 DKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE  186 (595)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE
T ss_pred             cCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEEEEECCCCe
Confidence            44566688899999887775532 2345778887 4 888 5555553                  34689999998876


Q ss_pred             CCceeeecccCcceEEEEecCCCCCEEEEEeCCC--------------------------------------cEEEEeCC
Q 046899          229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--------------------------------------SIHMFDRR  270 (407)
Q Consensus       229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--------------------------------------~i~vwd~~  270 (407)
                        ......--. ....++++| +++++++.+.+.                                      .|.+.|.+
T Consensus       187 --v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~  262 (595)
T 1fwx_A          187 --VAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR  262 (595)
T ss_dssp             --EEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS
T ss_pred             --EEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCc
Confidence              444433222 345678899 788888777553                                      36666666


Q ss_pred             CCCCCCCCCc-eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc------------ccccccCCCcccCC
Q 046899          271 KLTSDGVGSP-IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE------------KQDYGELKYPIIHP  337 (407)
Q Consensus       271 ~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~------------~~~~~~~~~~v~~~  337 (407)
                      +..    ++. +..+..- ....++.++|||+++++++..+.+|.++|+.+.+.            ....+ -.....++
T Consensus       263 ~~~----~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~  336 (595)
T 1fwx_A          263 KEA----SSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT  336 (595)
T ss_dssp             GGG----CCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred             ccC----CceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence            411    123 4445432 24578999999999999999999999999997531            11222 12233455


Q ss_pred             CCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          338 AYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       338 ~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +|++|                  +...++.-.|+.|.+||+.
T Consensus       337 aF~~d------------------G~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          337 AFDGR------------------GNAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             EECTT------------------SEEEEEETTTTEEEEEEHH
T ss_pred             EECCC------------------CeEEEEEecCCcEEEEEhh
Confidence            66665                  6445566778899999986

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.46  E-value=1.4e-05  Score=72.63  Aligned_cols=248  Identities=11%  Similarity=-0.008  Sum_probs=138.8

Q ss_pred             eEEEEeeCCCcEEEEeCcCCCCcccccCcCC---------CC---C----------CCCCcEEEEeccccccccccCCCC
Q 046899           97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAAD---------SH---P----------DLDQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~---------~~---~----------~~d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      ..+..++.++.|..+|..+++.+-.......         ..   +          ..++.+..+|..++..........
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~  133 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG  133 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence            3566666778888888887765433222110         00   0          006777778877664432221111


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCE-----EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTV-----EDVQFCPSSAQEFCSVGDDSCLILWDARSGST  229 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  229 (407)
                      ............+..++.++.+..+|..+++.+-.+.......     ......  + ..++.++.++.|..+|..+++ 
T Consensus       134 ~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~-  209 (376)
T 3q7m_A          134 EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQ-  209 (376)
T ss_dssp             CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCC-
T ss_pred             ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCc-
Confidence            1000000112345556778888899998888776665322111     111221  2 357778889999999999887 


Q ss_pred             CceeeecccCc--c--eEE---EEecC-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC
Q 046899          230 PAVKVEKAHNA--D--IHC---VDWNP-HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS  301 (407)
Q Consensus       230 ~~~~~~~~~~~--~--v~~---l~~~~-~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  301 (407)
                       ..........  .  +..   +...| ..+..++.++.++.+..+|.++      ++.+.....  .....+...  +.
T Consensus       210 -~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t------G~~~w~~~~--~~~~~~~~~--~~  278 (376)
T 3q7m_A          210 -MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS------GQIMWKREL--GSVNDFIVD--GN  278 (376)
T ss_dssp             -EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT------CCEEEEECC--CCEEEEEEE--TT
T ss_pred             -EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC------CcEEeeccC--CCCCCceEE--CC
Confidence             3333321110  0  000   00111 0235677788899999999998      787766653  334455543  44


Q ss_pred             CEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       302 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .++ .++.++.|..+|..+++.+-.........   ..++             ..   .++.|+.++.+|.|+++|..
T Consensus       279 ~l~-~~~~~g~l~~~d~~tG~~~w~~~~~~~~~---~~~~-------------~~---~~~~l~v~~~~g~l~~~d~~  336 (376)
T 3q7m_A          279 RIY-LVDQNDRVMALTIDGGVTLWTQSDLLHRL---LTSP-------------VL---YNGNLVVGDSEGYLHWINVE  336 (376)
T ss_dssp             EEE-EEETTCCEEEEETTTCCEEEEECTTTTSC---CCCC-------------EE---ETTEEEEECTTSEEEEEETT
T ss_pred             EEE-EEcCCCeEEEEECCCCcEEEeecccCCCc---ccCC-------------EE---ECCEEEEEeCCCeEEEEECC
Confidence            464 67778999999999887654433211111   0001             11   14567778888889999876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.44  E-value=2.7e-05  Score=65.15  Aligned_cols=194  Identities=10%  Similarity=0.117  Sum_probs=124.2

Q ss_pred             eeeEEEeeCCCc--eEEEEEeCCCCeEEEEeeCCC--cEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccc
Q 046899           74 VKKFKTIIHPGE--VNRIRELPQNSKIVATHTDSP--DVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        74 ~~~~~~~~h~~~--v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~  149 (407)
                      .+.+...+|...  ...|.|.+  +.++.+.+.+|  .|++.|+.+++....+........   .-+.++          
T Consensus         9 ~~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg---eGi~~~----------   73 (243)
T 3mbr_X            9 YRVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG---AGIVAW----------   73 (243)
T ss_dssp             EEEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE---EEEEEE----------
T ss_pred             eEEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce---eEEEEe----------
Confidence            345566678754  66999876  67777777754  899999999887665432211100   001111          


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST  229 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  229 (407)
                                 +  +........++.+.++|..+.+.+.++...... ..++  +++..+++| ..++.|.++|..+.+ 
T Consensus        74 -----------~--~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vS-dgs~~l~~iDp~t~~-  135 (243)
T 3mbr_X           74 -----------R--DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMS-DGTAVIRKLDPDTLQ-  135 (243)
T ss_dssp             -----------T--TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEE-CSSSEEEEECTTTCC-
T ss_pred             -----------C--CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEE-CCCCeEEEEeCCCCe-
Confidence                       0  011222345667778888888888888743322 3455  445344444 558899999999877 


Q ss_pred             Cceeeecc--cC---cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-------------CCCE
Q 046899          230 PAVKVEKA--HN---ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-------------SAAV  291 (407)
Q Consensus       230 ~~~~~~~~--~~---~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-------------~~~v  291 (407)
                       ....+.-  +.   ..++.+.|.  ++.+++..-.+..|.+.|.++      ++.+..+...             ....
T Consensus       136 -~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~t------G~V~~~idl~~l~~~~~~~~~~~~~vl  206 (243)
T 3mbr_X          136 -QVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPAS------GKVVAWIDLQALVPDADALTDSTNDVL  206 (243)
T ss_dssp             -EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTT------CBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred             -EEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCC------CCEEEEEECCcCccccccccCCcCCce
Confidence             3443332  22   245667776  566666665678999999999      8877766521             2357


Q ss_pred             EEEEEcCCCCCEEEEeeC
Q 046899          292 LCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       292 ~~v~~~~~~~~ll~s~~~  309 (407)
                      +.||++|++..||+||-.
T Consensus       207 NGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          207 NGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEECCC
Confidence            899999999989988753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.43  E-value=2e-07  Score=84.15  Aligned_cols=192  Identities=9%  Similarity=-0.046  Sum_probs=124.7

Q ss_pred             CCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe----------CCCcEEEEEcCCCCCCceeeeccc------
Q 046899          175 GDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG----------DDSCLILWDARSGSTPAVKVEKAH------  238 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~------  238 (407)
                      .+.++|..+++.+.++.....+  .+.++|++ ..++++.          .++.|.+||+.+.+  ....+...      
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg-~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~~~  121 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCccccc
Confidence            4558899999999998766666  79999999 4555554          37899999999988  45554322      


Q ss_pred             -CcceEEEEecCCCCCEEEEEeC--CCcEEE--EeCCC------CC----------------CCCC-------------C
Q 046899          239 -NADIHCVDWNPHDVNLILTGSA--DNSIHM--FDRRK------LT----------------SDGV-------------G  278 (407)
Q Consensus       239 -~~~v~~l~~~~~~~~~l~tg~~--dg~i~v--wd~~~------~~----------------~~~~-------------~  278 (407)
                       ......+.++| ++++++++..  +..+.+  +|+.+      ..                .++.             +
T Consensus       122 ~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~  200 (368)
T 1mda_H          122 VGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             BSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             cCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence             12346789999 8888888764  356888  87732      00                0000             0


Q ss_pred             Cc------------------------------eeeecC--CC---------------------CCEEEEEEcCCCCCEEE
Q 046899          279 SP------------------------------IHKFEG--HS---------------------AAVLCVQWSPDKSSVFG  305 (407)
Q Consensus       279 ~~------------------------------~~~~~~--h~---------------------~~v~~v~~~~~~~~ll~  305 (407)
                      +.                              +..+..  ..                     .....++++|+++++++
T Consensus       201 ~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          201 IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             eEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence            00                              000000  00                     00011678999998886


Q ss_pred             Eee---C-----CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccce-eeeEE-EeeeEEE
Q 046899          306 SSA---E-----DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRL-LVCLT-MVKVLEI  375 (407)
Q Consensus       306 s~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~-i~~~~-~d~~i~i  375 (407)
                      +..   .     ++.+.++|+.+.+.+.++.... ...++.|++|                  +.. +++.. .+++|.|
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~D------------------g~~l~va~~~~~~~VsV  341 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQD------------------GASDNYANSAGTEVLDI  341 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCS------------------SSCEEEEEETTTTEEEE
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCC------------------CCEEEEEccCCCCeEEE
Confidence            544   2     2356699999998888887544 4567788887                  654 44555 4889999


Q ss_pred             eeccccccCChHHHHHHHhhcc
Q 046899          376 WRMIDLIYRPEEEVLAELDKFK  397 (407)
Q Consensus       376 wd~~~~~~~~~~~~~~~~~~h~  397 (407)
                      +|+.      +++.++.+....
T Consensus       342 ID~~------t~kvv~~I~vg~  357 (368)
T 1mda_H          342 YDAA------SDQDQSSVELDK  357 (368)
T ss_dssp             EESS------SCEEEEECCCCS
T ss_pred             EECC------CCcEEEEEECCC
Confidence            9998      666666665443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.40  E-value=2.5e-06  Score=78.29  Aligned_cols=136  Identities=11%  Similarity=-0.016  Sum_probs=98.4

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe---------CCCcEEEEEcCCCCCCceeeeccc------
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG---------DDSCLILWDARSGSTPAVKVEKAH------  238 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~------  238 (407)
                      +.+.++|..+++.+..+.....+  .++++|++..++++..         .++.|.++|..+.+  ....+.--      
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~  174 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFL  174 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccccc
Confidence            67888999999999888766666  8999999944444432         46789999999887  44443211      


Q ss_pred             -CcceEEEEecCCCCCEEEEEeC--CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          239 -NADIHCVDWNPHDVNLILTGSA--DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       239 -~~~v~~l~~~~~~~~~l~tg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                       ......+.++| ++++++++..  ++.|.+.|+.+      .+.+.++..-.  .  ....|++...+++.+.||++.+
T Consensus       175 ~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t------~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~  243 (426)
T 3c75_H          175 VGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEG------KTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLAR  243 (426)
T ss_dssp             BSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTT------TEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEE
T ss_pred             cCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCC------CeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEE
Confidence             22345789999 8999888764  57899999999      78888876422  1  3445666556667788888888


Q ss_pred             EeCCCCCcc
Q 046899          316 WDHEKIGEK  324 (407)
Q Consensus       316 wd~~~~~~~  324 (407)
                      .++..++..
T Consensus       244 V~~~~~~v~  252 (426)
T 3c75_H          244 VDFADGETK  252 (426)
T ss_dssp             EECCTTCCE
T ss_pred             EECCCCcEE
Confidence            888554433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.34  E-value=0.00056  Score=62.30  Aligned_cols=207  Identities=5%  Similarity=-0.060  Sum_probs=119.5

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------CCcEEEEeccccccccccCCCC
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      .-...+..++|.+.++.++.+-...+.|..++.........+... ...+..      .+.+.+-|              
T Consensus       113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~lY~~d--------------  177 (386)
T 3v65_B          113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTD--------------  177 (386)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-CSCCCCEEEETTTTEEEEEE--------------
T ss_pred             cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-CCCccEEEEEeCCCeEEEEc--------------
Confidence            344568899999877888888777889999998765422211111 111100      11111111              


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCcee
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVK  233 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~  233 (407)
                                      ...+.|.+.+.........+.........|+++|.+..++++-... +.|..+++....  ...
T Consensus       178 ----------------~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~  239 (386)
T 3v65_B          178 ----------------SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRI  239 (386)
T ss_dssp             ----------------TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEE
T ss_pred             ----------------CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--cEE
Confidence                            1222333333332222222222334678999998775666665555 788888886543  222


Q ss_pred             eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      .....-...+.|+++|.++++.++-...+.|..+|+..      ......+.........|++. . ..|+.+-...+.|
T Consensus       240 ~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~P~giav~-~-~~ly~td~~~~~V  311 (386)
T 3v65_B          240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPFAITVF-E-DSLYWTDWHTKSI  311 (386)
T ss_dssp             EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS------CSCEEEECSSCSSEEEEEEE-T-TEEEEEETTTTEE
T ss_pred             EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC------CeeEEEEECCCCCceEEEEE-C-CEEEEeeCCCCeE
Confidence            22223345689999983445555555567899999864      22222233334456888883 3 3477788888999


Q ss_pred             EEEeCCCCCcccccc
Q 046899          314 NIWDHEKIGEKQDYG  328 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~  328 (407)
                      ..+|..+++....+.
T Consensus       312 ~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          312 NSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEETTTCCSCEEEE
T ss_pred             EEEECCCCcceEEEc
Confidence            999966666555544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.34  E-value=5.3e-06  Score=73.77  Aligned_cols=175  Identities=10%  Similarity=0.002  Sum_probs=112.6

Q ss_pred             ccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899          166 KNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV  245 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l  245 (407)
                      .+..++.++.+..+|.. ++.+..+......+.++...+++ . +..++  +.|..+| .+++  ...........+.++
T Consensus       149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~--~~~~~~~~~~~~~~~  220 (330)
T 3hxj_A          149 TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGT--EKWNFYAGYWTVTRP  220 (330)
T ss_dssp             CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSC--EEEEECCSSCCCSCC
T ss_pred             EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCc--EEEEEccCCcceece
Confidence            35556667888888888 77666666555667778887777 4 44444  8899999 6665  344444445567788


Q ss_pred             EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899          246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ  325 (407)
Q Consensus       246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~  325 (407)
                      ..++ ++. +..++.++.+..+|..       ++.+..+......+.++...+++. |+ .++.++.|..+|. +++...
T Consensus       221 ~~~~-~g~-l~v~t~~~gl~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~ggl~~~d~-~g~~~~  288 (330)
T 3hxj_A          221 AISE-DGT-IYVTSLDGHLYAINPD-------GTEKWRFKTGKRIESSPVIGNTDT-IY-FGSYDGHLYAINP-DGTEKW  288 (330)
T ss_dssp             EECT-TSC-EEEEETTTEEEEECTT-------SCEEEEEECSSCCCSCCEECTTSC-EE-EECTTCEEEEECT-TSCEEE
T ss_pred             EECC-CCe-EEEEcCCCeEEEECCC-------CCEeEEeeCCCCccccceEcCCCe-EE-EecCCCCEEEECC-CCcEEE
Confidence            8887 554 5556777888888753       466666655444455566766775 54 6777888999996 555444


Q ss_pred             ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          326 DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       326 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      .+......+.++..                   ..+..|..++.+|.+++....
T Consensus       289 ~~~~~~~~~~~~~~-------------------d~~g~l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          289 NFETGSWIIATPVI-------------------DENGTIYFGTRNGKFYALFNL  323 (330)
T ss_dssp             EEECSSCCCSCCEE-------------------CTTCCEEEECTTSCEEEEEC-
T ss_pred             EEEcCCccccceEE-------------------cCCCEEEEEcCCCeEEEEecc
Confidence            44332222222222                   124567788889999888765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.31  E-value=2.4e-05  Score=76.93  Aligned_cols=145  Identities=11%  Similarity=0.093  Sum_probs=95.5

Q ss_pred             CCCCCCCCCcCceeeEee--cc-------cCEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCCCCceeeeccc-----
Q 046899          175 GDKPLESPSIGARGKYLG--HE-------DTVEDVQFCPSSA--QEFCSVGDDSCLILWDARSGSTPAVKVEKAH-----  238 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----  238 (407)
                      .+..+|..+++.+-.++.  |.       .....+....+|.  ..++.++.+|.|.++|.++++  .+......     
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~--~l~~~~~~~~~~~  361 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK--FISAKNFVPVNWA  361 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC--EEEEEESSCCSSE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC--EeccccccccCcc
Confidence            366678888887766553  21       1112222223442  478889999999999999988  33322211     


Q ss_pred             ------Ccce------------------------EEEEecCCCCCEEEEEeC----------------------------
Q 046899          239 ------NADI------------------------HCVDWNPHDVNLILTGSA----------------------------  260 (407)
Q Consensus       239 ------~~~v------------------------~~l~~~~~~~~~l~tg~~----------------------------  260 (407)
                            ..++                        ..++++| +..++++...                            
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  440 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW  440 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence                  0011                        1467888 6667766533                            


Q ss_pred             ---------------CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899          261 ---------------DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ  325 (407)
Q Consensus       261 ---------------dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~  325 (407)
                                     .|.|..||+.+      ++.+.++.. ..++....+...+..++ .++.|+.+++||+++++.+.
T Consensus       441 ~~g~~~~~~~~~~~~~g~l~A~D~~t------G~~~W~~~~-~~~~~~g~~~~~g~~v~-~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          441 NTAKFFNAEPPKSKPFGRLLAWDPVA------QKAAWSVEH-VSPWNGGTLTTAGNVVF-QGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             CCCEEECSSCCCSCCEEEEEEEETTT------TEEEEEEEE-SSSCCCCEEEETTTEEE-EECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccCCCCCccEEEEEeCCC------CcEEeecCC-CCCCcCcceEeCCCEEE-EECCCCcEEEEECCCCceee
Confidence                           27899999998      888877763 34455555666777554 78899999999999999887


Q ss_pred             ccccC
Q 046899          326 DYGEL  330 (407)
Q Consensus       326 ~~~~~  330 (407)
                      .+...
T Consensus       513 ~~~~~  517 (677)
T 1kb0_A          513 EAPTG  517 (677)
T ss_dssp             EEECS
T ss_pred             eeeCC
Confidence            77643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.29  E-value=1.2e-05  Score=73.36  Aligned_cols=143  Identities=15%  Similarity=0.097  Sum_probs=97.7

Q ss_pred             cccccCCCCCCCCCCCCc----CceeeEe------e-cccCEEEEEECCCCCcEEEEEeCC------CcEEEEEcCCCCC
Q 046899          167 NASKSGGNGDKPLESPSI----GARGKYL------G-HEDTVEDVQFCPSSAQEFCSVGDD------SCLILWDARSGST  229 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~----~~~~~~~------~-~~~~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~  229 (407)
                      .+.+..++.|.++|..+.    +...++.      . ....-..+...|+|  +++++..+      |.|.+.|..+.+ 
T Consensus        99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~-  175 (462)
T 2ece_A           99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE-  175 (462)
T ss_dssp             EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC-
T ss_pred             EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe-
Confidence            445667788888887643    3333331      0 11134567788988  66666655      789999999888 


Q ss_pred             Cceeeeccc--C-cceEEEEecCCCCCEEEEEe-------------------CCCcEEEEeCCCCCCCCCCCceeeecCC
Q 046899          230 PAVKVEKAH--N-ADIHCVDWNPHDVNLILTGS-------------------ADNSIHMFDRRKLTSDGVGSPIHKFEGH  287 (407)
Q Consensus       230 ~~~~~~~~~--~-~~v~~l~~~~~~~~~l~tg~-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~h  287 (407)
                       .+.....-  . ..-+.+.|+| +.+.+++..                   .+.+|.+||+.+      ++.+.++...
T Consensus       176 -v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~vg  247 (462)
T 2ece_A          176 -PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLTLG  247 (462)
T ss_dssp             -EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT------TEEEEEEESC
T ss_pred             -EEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC------CcEeeEEecC
Confidence             45554322  1 2234588899 888888874                   368999999998      7777777653


Q ss_pred             C--CCEEEEEE--cCCCCCEEEEee-----CCCeEEEEeCCC
Q 046899          288 S--AAVLCVQW--SPDKSSVFGSSA-----EDGILNIWDHEK  320 (407)
Q Consensus       288 ~--~~v~~v~~--~~~~~~ll~s~~-----~d~~i~vwd~~~  320 (407)
                      .  .....++|  +|+++++++++.     .+++|.+|....
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence            1  24456666  999999988887     888998766543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.25  E-value=0.0013  Score=59.04  Aligned_cols=207  Identities=5%  Similarity=-0.060  Sum_probs=117.8

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------CCcEEEEeccccccccccCCCC
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAAEPGS  154 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~~~~~  154 (407)
                      .....+..++|.+.++.++.+-...+.|..++.........+... ...+..      ++.+.+-|              
T Consensus        70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~ly~~d--------------  134 (349)
T 3v64_C           70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTD--------------  134 (349)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEE--------------
T ss_pred             cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-CCCccEEEEecCCCeEEEEc--------------
Confidence            344568899999877888888777889999998765432221111 000100      11111111              


Q ss_pred             CcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCcee
Q 046899          155 AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVK  233 (407)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~  233 (407)
                                      ...+.|.+.+...................|+++|.+..++++-... +.|..+++....  ...
T Consensus       135 ----------------~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~  196 (349)
T 3v64_C          135 ----------------SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRI  196 (349)
T ss_dssp             ----------------TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEE
T ss_pred             ----------------CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEE
Confidence                            1112222333222111111222334568999999764667666665 889999887443  122


Q ss_pred             eecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeE
Q 046899          234 VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGIL  313 (407)
Q Consensus       234 ~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i  313 (407)
                      .....-...+.|+++|.++++.++-...+.|..+|+..      ......+...-.....+++. . ..|+.+-...+.|
T Consensus       197 ~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG------~~~~~~~~~~~~~P~giav~-~-~~ly~td~~~~~V  268 (349)
T 3v64_C          197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPFAITVF-E-DSLYWTDWHTKSI  268 (349)
T ss_dssp             SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEECSSCSSEEEEEEE-T-TEEEEEETTTTEE
T ss_pred             EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC------CceEEEEeCCCCCceEEEEE-C-CEEEEecCCCCeE
Confidence            22223345689999984444555555567899999874      22222233334456788883 3 3477787788999


Q ss_pred             EEEeCCCCCcccccc
Q 046899          314 NIWDHEKIGEKQDYG  328 (407)
Q Consensus       314 ~vwd~~~~~~~~~~~  328 (407)
                      ..+|..+++....+.
T Consensus       269 ~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          269 NSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEETTTCCSCEEEE
T ss_pred             EEEEccCCCccEEec
Confidence            999866665554443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.23  E-value=0.00034  Score=60.08  Aligned_cols=135  Identities=5%  Similarity=-0.011  Sum_probs=85.8

Q ss_pred             CEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEE-EEEeCCCcEEEEeCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGD--DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLI-LTGSADNSIHMFDRRKL  272 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~  272 (407)
                      ....++++|++..++++...  .+.|..+++....  ..............++++| ++..| ++-...+.|.++|... 
T Consensus       123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g-  198 (267)
T 1npe_A          123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQ-  198 (267)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTE-
T ss_pred             CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCC-
Confidence            35789999965355555543  4688888876433  1111112234578899999 55544 5555568999999975 


Q ss_pred             CCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC-cccCCCCcCc
Q 046899          273 TSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY-PIIHPAYSSD  342 (407)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~d  342 (407)
                           ......+.. ......++..  +.+|+++....+.|..+|..+++.+..+..... ...++++.|+
T Consensus       199 -----~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          199 -----PGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             -----EEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             -----CceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence                 332223332 2334677764  456877777789999999998887777754332 3556666665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.23  E-value=1e-05  Score=76.26  Aligned_cols=165  Identities=12%  Similarity=0.085  Sum_probs=104.0

Q ss_pred             cCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC---------------------------------
Q 046899          171 SGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS---------------------------------  217 (407)
Q Consensus       171 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg---------------------------------  217 (407)
                      ..++.+.++|..+++....+.-.. .-..++++|+| .++++++.+.                                 
T Consensus       172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence            344556667777777766665322 34567889998 5565555432                                 


Q ss_pred             -----cEEEEEcCC--CCCCceeeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCCCC------CCCCCceee
Q 046899          218 -----CLILWDARS--GSTPAVKVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKLTS------DGVGSPIHK  283 (407)
Q Consensus       218 -----~i~iwd~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~------~~~~~~~~~  283 (407)
                           .|.+.|.++  +.. ....+. -.....++.++| |+++++++ ..+..|.++|+.+...      +.....+.+
T Consensus       250 ~~~i~~V~VID~~~~~~~~-~~~~Ip-vg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEASSL-FTRYIP-IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             SEEETTEEEEECSGGGCCS-SEEEEE-EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             eeEECcEEEEeCcccCCce-eEEEEe-cCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence                 466777766  331 122222 223456899999 88766554 4678999999986210      000113344


Q ss_pred             ecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC----------CCcccccccCCCc-----ccCCCCcCc
Q 046899          284 FEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK----------IGEKQDYGELKYP-----IIHPAYSSD  342 (407)
Q Consensus       284 ~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~----------~~~~~~~~~~~~~-----v~~~~~s~d  342 (407)
                      +.. ......++|+|+| +++++...|++|.+||+.+          .+.+..+..+..|     -.+..+++|
T Consensus       327 v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D  398 (595)
T 1fwx_A          327 PEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT  398 (595)
T ss_dssp             CBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred             cCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC
Confidence            443 3457899999999 7888999999999999987          4445555555443     245567777

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.19  E-value=1.4e-05  Score=78.49  Aligned_cols=101  Identities=9%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             CCCCCCCCCCCcCceeeEeec--c-----------------------------cCEEEEEECCCCCcEEEEEeCCC----
Q 046899          173 GNGDKPLESPSIGARGKYLGH--E-----------------------------DTVEDVQFCPSSAQEFCSVGDDS----  217 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~~~--~-----------------------------~~v~~l~~~~~~~~~l~s~~~dg----  217 (407)
                      ++.+..+|..+++.+-.+...  .                             .....+++.|.. .+++.++.++    
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~  255 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWN  255 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccc
Confidence            477888899888877665421  0                             011246777876 5777777666    


Q ss_pred             ---------------cEEEEEcCCCCCCceeeecc--cC-------cceEEEEecCCCCC---EEEEEeCCCcEEEEeCC
Q 046899          218 ---------------CLILWDARSGSTPAVKVEKA--HN-------ADIHCVDWNPHDVN---LILTGSADNSIHMFDRR  270 (407)
Q Consensus       218 ---------------~i~iwd~~~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~~---~l~tg~~dg~i~vwd~~  270 (407)
                                     .|..+|.++++  ....++.  |.       .+.....+.. +++   .++.++.+|.++++|.+
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~tG~--~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~  332 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDTGK--LAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRT  332 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETT
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCCCc--eeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECC
Confidence                           39999999998  4444432  22       2232233333 444   68899999999999999


Q ss_pred             CCCCCCCCCceee
Q 046899          271 KLTSDGVGSPIHK  283 (407)
Q Consensus       271 ~~~~~~~~~~~~~  283 (407)
                      +      ++.+..
T Consensus       333 t------G~~l~~  339 (668)
T 1kv9_A          333 N------GKLISA  339 (668)
T ss_dssp             T------CCEEEE
T ss_pred             C------CCEecc
Confidence            8      777643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.14  E-value=0.0031  Score=55.57  Aligned_cols=213  Identities=8%  Similarity=-0.043  Sum_probs=115.2

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC---CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ---PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      +.....+..++|.+.++.++.+-..++.|..++....   .....+.......+.  + + ..|...             
T Consensus        26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~--g-l-avd~~~-------------   88 (316)
T 1ijq_A           26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD--G-L-AVDWIH-------------   88 (316)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC--E-E-EEETTT-------------
T ss_pred             hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC--E-E-EEeecC-------------
Confidence            3455678899999867788888878889999998752   111111110000000  0 0 001000             


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCceeee
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~  235 (407)
                             ....++-...+.|.+.+...................++++|.+..++++.... +.|...++....  .....
T Consensus        89 -------~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~  159 (316)
T 1ijq_A           89 -------SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLV  159 (316)
T ss_dssp             -------TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEE
T ss_pred             -------CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEEEE
Confidence                   00111112233344444332222222222335678999998764666665443 788888876433  12122


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec---CCCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGI  312 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~ll~s~~~d~~  312 (407)
                      ...-...+.|+++|.++++.++-...+.|..+|+..       .....+.   ..-.....+++.  +.+++.+-...+.
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-------~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~  230 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA  230 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-------CceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCe
Confidence            223346789999983444445545567999999874       2222221   123346788885  3457778878899


Q ss_pred             EEEEeCCCCCccccc
Q 046899          313 LNIWDHEKIGEKQDY  327 (407)
Q Consensus       313 i~vwd~~~~~~~~~~  327 (407)
                      |..+|..+++....+
T Consensus       231 V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          231 IFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEETTTCCCCEEE
T ss_pred             EEEEeCCCCcceEEE
Confidence            999998766655444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.12  E-value=0.00047  Score=60.58  Aligned_cols=114  Identities=13%  Similarity=0.068  Sum_probs=68.0

Q ss_pred             CEEEEEECCCCCcEEEEEeCC-C-cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDD-S-CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~d-g-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      ....+++.+++ +++++.... + .|..+|..+++....... ........++..+ ++..+++-..++.|.++|...  
T Consensus        73 ~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~--  147 (306)
T 2p4o_A           73 KVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ--  147 (306)
T ss_dssp             EEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT--
T ss_pred             CceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCC--
Confidence            46789999998 566555433 2 477777776662111111 1122334555555 555555554688999999764  


Q ss_pred             CCCCCC-cee---------eecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          274 SDGVGS-PIH---------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       274 ~~~~~~-~~~---------~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                          +. .+.         .....-...+.+  +|++.+|+++-...+.|..+|+..
T Consensus       148 ----~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          148 ----PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             ----TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             ----CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence                21 111         001111245566  788888888888889999999875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.08  E-value=0.00047  Score=61.00  Aligned_cols=121  Identities=11%  Similarity=-0.030  Sum_probs=74.9

Q ss_pred             CEEEEEECC-CCCcEEEEEeC-----------------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEE
Q 046899          196 TVEDVQFCP-SSAQEFCSVGD-----------------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT  257 (407)
Q Consensus       196 ~v~~l~~~~-~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~t  257 (407)
                      ..+.+++.+ +| +++++...                 ++.|..+|..+++  .. .........+.|+++| +++.|+.
T Consensus       127 ~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~-~~~~~~~~p~gia~~~-dg~~lyv  201 (322)
T 2fp8_A          127 WLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--TT-LLLKELHVPGGAEVSA-DSSFVLV  201 (322)
T ss_dssp             CEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--EE-EEEEEESCCCEEEECT-TSSEEEE
T ss_pred             ccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE--EE-EeccCCccCcceEECC-CCCEEEE
Confidence            468899999 88 66665432                 3678888876655  22 1111223456799999 8776555


Q ss_pred             E-eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC----------CCeEEEEeCCCCCcccc
Q 046899          258 G-SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE----------DGILNIWDHEKIGEKQD  326 (407)
Q Consensus       258 g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~----------d~~i~vwd~~~~~~~~~  326 (407)
                      + ...+.|.+|++....    ......+....+ ...+++.++|. |+++...          .+.|..+|.. ++.+..
T Consensus       202 ~d~~~~~I~~~~~~~~~----~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~  274 (322)
T 2fp8_A          202 AEFLSHQIVKYWLEGPK----KGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEV  274 (322)
T ss_dssp             EEGGGTEEEEEESSSTT----TTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEE
T ss_pred             EeCCCCeEEEEECCCCc----CCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCC-CCEEEE
Confidence            5 556899999987521    011122211223 78899999998 5555543          4678888864 455555


Q ss_pred             cc
Q 046899          327 YG  328 (407)
Q Consensus       327 ~~  328 (407)
                      +.
T Consensus       275 ~~  276 (322)
T 2fp8_A          275 IP  276 (322)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.06  E-value=4.2e-05  Score=75.31  Aligned_cols=83  Identities=20%  Similarity=0.191  Sum_probs=57.4

Q ss_pred             CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCC-CEEEE
Q 046899          216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSA-AVLCV  294 (407)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~-~v~~v  294 (407)
                      +|.|..||+.+++  .......+ .++..-.+.. .+.++++|+.||.++.||.++      ++.+.+++...+ ...-+
T Consensus       454 ~g~l~A~D~~tG~--~~W~~~~~-~~~~~g~~~t-agglvf~gt~dg~l~a~D~~t------G~~lw~~~~~~~~~~~p~  523 (689)
T 1yiq_A          454 SGKLIAWDPVKQQ--AAWEVPYV-TIFNGGTLST-AGNLVFEGSADGRVIAYAADT------GEKLWEQPAASGVMAAPV  523 (689)
T ss_dssp             EEEEEEEETTTTE--EEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCE
T ss_pred             ceeEEEEECCCCC--eEeEccCC-CCccCccceE-CCCEEEEECCCCcEEEEECCC------CccceeeeCCCCcccCce
Confidence            3789999999988  45554333 2333334444 567889999999999999999      999988875422 22346


Q ss_pred             EEcCCCCCEEEEee
Q 046899          295 QWSPDKSSVFGSSA  308 (407)
Q Consensus       295 ~~~~~~~~ll~s~~  308 (407)
                      .|..+|+..+++.+
T Consensus       524 ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          524 TYSVDGEQYVTFMA  537 (689)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEECCEEEEEEEe
Confidence            66778875555443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.02  E-value=2.6e-05  Score=66.52  Aligned_cols=176  Identities=9%  Similarity=-0.032  Sum_probs=115.2

Q ss_pred             CCCCCCCCCCCcCceeeEeecc-cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899          173 GNGDKPLESPSIGARGKYLGHE-DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      ++.+.++|..+++.+..+.-.. .....+++.  +..++++.-.++.+.++|..+.+  .+..+..-...-..++  + +
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--v~~~i~~g~~~g~glt--~-D  115 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--NIKNFTHQMKDGWGLA--T-D  115 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--EEEEEECCSSSCCEEE--E-C
T ss_pred             CCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--EEEEEECCCCCeEEEE--E-C
Confidence            5678888888888887765222 223355655  33566666678999999999877  4444432212223344  4 4


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899          252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD  326 (407)
Q Consensus       252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  326 (407)
                      +..++++..++.|.++|..+      .+.+..+.-..     ..++.+.|. ++ .+++....++.|.+.|+.+++.+..
T Consensus       116 g~~l~vs~gs~~l~viD~~t------~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~  187 (266)
T 2iwa_A          116 GKILYGSDGTSILYEIDPHT------FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGW  187 (266)
T ss_dssp             SSSEEEECSSSEEEEECTTT------CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCC------CcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEE
Confidence            45555556788999999998      77777776421     236788888 66 4887777789999999999888777


Q ss_pred             cccCC-------------CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccc
Q 046899          327 YGELK-------------YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMID  380 (407)
Q Consensus       327 ~~~~~-------------~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~  380 (407)
                      +.-..             .-..+++|+++                 ....++++...++|.+-++..
T Consensus       188 I~~~g~~~~~~~~~~~~~~v~nGIa~~~~-----------------~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          188 ILLPNLRKKLIDEGFRDIDVLNGIAWDQE-----------------NKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EECHHHHHHHHHTTCTTCCCEEEEEEETT-----------------TTEEEEEETTCSEEEEEEEEE
T ss_pred             EECCCcccccccccccccCceEEEEEcCC-----------------CCEEEEECCCCCeEEEEEEec
Confidence            65321             11234555544                 234555666677888887764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.02  E-value=5.9e-05  Score=63.67  Aligned_cols=145  Identities=5%  Similarity=-0.061  Sum_probs=102.7

Q ss_pred             cccccCCCCCCCCCCCCcCceeeEeeccc-CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEE
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLGHED-TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV  245 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l  245 (407)
                      ..+.+.++.++.+|..+++.+..+ -... .-..+++..  ..+++..-.++.+.+||..+.+  .+..+.. ...-..+
T Consensus        68 y~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~-~~eGwGL  141 (268)
T 3nok_A           68 FESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQ--RERTTRY-SGEGWGL  141 (268)
T ss_dssp             EEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTE--EEEEEEC-SSCCCCE
T ss_pred             EEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCc--EEEEEeC-CCceeEE
Confidence            445566677999999999988887 3222 123466544  3566666778999999999888  4555543 2333455


Q ss_pred             EecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          246 DWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       246 ~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      ++   ++..|+.+..++.|.++|..+      .+.+.++....     ..++.+.|. +|. |+|....++.|.+.|..+
T Consensus       142 t~---Dg~~L~vSdGs~~l~~iDp~T------~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          142 CY---WNGKLVRSDGGTMLTFHEPDG------FALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             EE---ETTEEEEECSSSEEEEECTTT------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTT
T ss_pred             ec---CCCEEEEECCCCEEEEEcCCC------CeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCC
Confidence            54   456666666789999999998      77787776422     245777887 665 887777789999999999


Q ss_pred             CCcccccc
Q 046899          321 IGEKQDYG  328 (407)
Q Consensus       321 ~~~~~~~~  328 (407)
                      ++.+..+.
T Consensus       211 G~V~~~Id  218 (268)
T 3nok_A          211 GTVVGVID  218 (268)
T ss_dssp             CBEEEEEE
T ss_pred             CcEEEEEE
Confidence            88877654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.99  E-value=3.6e-05  Score=64.98  Aligned_cols=140  Identities=9%  Similarity=0.057  Sum_probs=96.7

Q ss_pred             CCCCCCCCCCcCceeeEeecccC-EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899          174 NGDKPLESPSIGARGKYLGHEDT-VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV  252 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  252 (407)
                      +.++.+|..+++.+....-.... -..++..  +..+++..-.++.+.+||..+.+  .+..+..- ..-..+++   ++
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~-~eG~glt~---dg  136 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYD-GEGWGLTH---ND  136 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC--EEEEEECS-SCCCCEEE---CS
T ss_pred             ceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc--EEEEEECC-CCceEEec---CC
Confidence            37888999999988887643322 1234543  43566666678999999999988  45555432 23344554   44


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC--C---CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899          253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH--S---AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY  327 (407)
Q Consensus       253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h--~---~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~  327 (407)
                      ..|+....++.|.++|..+      .+.+.++...  .   ..++.+.|. +|. |+|....++.|.+.|..+++.+..+
T Consensus       137 ~~L~~SdGs~~i~~iDp~T------~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          137 QYLIMSDGTPVLRFLDPES------LTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             SCEEECCSSSEEEEECTTT------CSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEE
T ss_pred             CEEEEECCCCeEEEEcCCC------CeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEE
Confidence            5555555578899999998      7777777642  1   335567886 665 8877778899999999998887766


Q ss_pred             cc
Q 046899          328 GE  329 (407)
Q Consensus       328 ~~  329 (407)
                      .-
T Consensus       209 d~  210 (262)
T 3nol_A          209 DL  210 (262)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.98  E-value=0.0009  Score=59.99  Aligned_cols=138  Identities=7%  Similarity=-0.042  Sum_probs=89.8

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCC
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVN  253 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  253 (407)
                      ..|+..+....... .+.........++|++.+..++++-...+.|..+++....  ..............+++++.+++
T Consensus        53 ~~I~~i~~~g~~~~-~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~  129 (349)
T 3v64_C           53 IDIRQVLPHRSEYT-LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDK  129 (349)
T ss_dssp             SCEEEECTTSCCEE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTE
T ss_pred             cceEEEeCCCCeeE-EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC--ceEEEeCCCCCccEEEEecCCCe
Confidence            34444554443332 2223344578999998664777777778999999988655  22222222234567888874566


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCC
Q 046899          254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-GILNIWDHEK  320 (407)
Q Consensus       254 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~  320 (407)
                      ++++-...+.|.+.++..      ......+...-.....++++|.+..|+.+-... +.|...++..
T Consensus       130 ly~~d~~~~~I~~~~~dG------~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          130 LYWTDSGTSRIEVANLDG------AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             EEEEETTTTEEEEEETTS------CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             EEEEcCCCCeEEEEcCCC------CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence            666666678999999875      222222333335679999999777787777666 8899998875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.95  E-value=0.0056  Score=55.89  Aligned_cols=207  Identities=8%  Similarity=-0.022  Sum_probs=116.2

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCC---CcccccCcCCCCCCC------CCcEEEEecccccccccc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP---NRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAA  150 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~  150 (407)
                      ......+..|+|.+.++.++.+-...+.|..+++....   ....+.......+..      .+.+.+            
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~------------  175 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW------------  175 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEE------------
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEE------------
Confidence            44567889999998778788887778889999887532   111111100000000      111111            


Q ss_pred             CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCC
Q 046899          151 EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGD-DSCLILWDARSGST  229 (407)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~  229 (407)
                                        +-...+.|.+.+.........+.........|+++|.+..++++-.. .+.|...++.... 
T Consensus       176 ------------------~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-  236 (400)
T 3p5b_L          176 ------------------TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-  236 (400)
T ss_dssp             ------------------EETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-
T ss_pred             ------------------EECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-
Confidence                              11223344444444333222333334457899999976455555433 4789998887544 


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-c--CCCCCEEEEEEcCCCCCEEEE
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-E--GHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~--~h~~~v~~v~~~~~~~~ll~s  306 (407)
                       ........-...+.|++++.++++..+=...+.|..+|+..       .....+ .  ..-.....|++.  +.+|+.+
T Consensus       237 -~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~l~~P~gl~v~--~~~lywt  306 (400)
T 3p5b_L          237 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAHPFSLAVF--EDKVFWT  306 (400)
T ss_dssp             -CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CCCEEEEECSSTTSSEEEEEEE--TTEEEEE
T ss_pred             -cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-------CccEEEEeCCCCCCCCEEEEEe--CCEEEEe
Confidence             22222233356789999983444444444567899999875       222222 2  123445677773  3457778


Q ss_pred             eeCCCeEEEEeCCCCCccccc
Q 046899          307 SAEDGILNIWDHEKIGEKQDY  327 (407)
Q Consensus       307 ~~~d~~i~vwd~~~~~~~~~~  327 (407)
                      -...+.|..+|..+++.+..+
T Consensus       307 d~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          307 DIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             ESSSCSEEEEESSSCCCCEEE
T ss_pred             cCCCCeEEEEEcCCCCceEEE
Confidence            778889999997766655444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.90  E-value=0.00056  Score=65.72  Aligned_cols=58  Identities=17%  Similarity=0.098  Sum_probs=38.0

Q ss_pred             cEEEEEcCCCCCCceeeecc--c--------CcceEEEEecCCCC---CEEEEEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899          218 CLILWDARSGSTPAVKVEKA--H--------NADIHCVDWNPHDV---NLILTGSADNSIHMFDRRKLTSDGVGSPIHKF  284 (407)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~--~--------~~~v~~l~~~~~~~---~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~  284 (407)
                      .|..+|.++++  ....++.  |        ..++. +...+ ++   ..++.++.+|.+.++|.++      ++.+..+
T Consensus       273 ~v~Ald~~tG~--~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~~w~~  342 (571)
T 2ad6_A          273 TIWGRDLDTGM--AKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNREN------GNLIVAE  342 (571)
T ss_dssp             EEEEEETTTCC--EEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTT------CCEEEEE
T ss_pred             EEEEEecCCCc--EEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCC------CCEEeee
Confidence            59999999988  4444332  2        12221 22223 55   3677889999999999988      7777655


Q ss_pred             c
Q 046899          285 E  285 (407)
Q Consensus       285 ~  285 (407)
                      .
T Consensus       343 ~  343 (571)
T 2ad6_A          343 K  343 (571)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.87  E-value=0.0054  Score=54.04  Aligned_cols=203  Identities=8%  Similarity=-0.030  Sum_probs=113.9

Q ss_pred             CceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------CCcEEEEeccccccccccCCCCCcc
Q 046899           84 GEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        84 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      ..+.+|.|.+.++.++.+-...+.|..++.........+.......+..      ++.+.+-|                 
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d-----------------   97 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD-----------------   97 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEE-----------------
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEE-----------------
Confidence            4577899998778888888888899999987653221111110000100      11111111                 


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCCCceeeec
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVG-DDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                                   ...+.|.+++...................|++.|.+..++++-. ..+.|...++.-..  ......
T Consensus        98 -------------~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~  162 (318)
T 3sov_A           98 -------------SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--RFIIIN  162 (318)
T ss_dssp             -------------TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--CEEEEC
T ss_pred             -------------CCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--eEEEEE
Confidence                         11222333333221111112223345689999987645555542 35788888876433  122222


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      ..-...+.|+++|.++++..+=...+.|..+|+..       .....+ ...-.....+++..  ..++.+-...+.|..
T Consensus       163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~  233 (318)
T 3sov_A          163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-------TNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILA  233 (318)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEE
T ss_pred             CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-------CceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEE
Confidence            22345689999984444444545567899999874       222222 22344567888853  347777777899999


Q ss_pred             EeCCCCCccccc
Q 046899          316 WDHEKIGEKQDY  327 (407)
Q Consensus       316 wd~~~~~~~~~~  327 (407)
                      +|..+++....+
T Consensus       234 ~~~~~G~~~~~i  245 (318)
T 3sov_A          234 CNKYTGEGLREI  245 (318)
T ss_dssp             EETTTCCSCEEE
T ss_pred             EECCCCCceEEE
Confidence            998776655444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.87  E-value=0.00059  Score=62.15  Aligned_cols=140  Identities=6%  Similarity=-0.068  Sum_probs=90.9

Q ss_pred             CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899          173 GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV  252 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  252 (407)
                      ...|+.++.......... ........++|++.+..++++-...+.|..+++....  ..............+++++.++
T Consensus        95 ~~~I~~i~~~~~~~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g  171 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHD  171 (386)
T ss_dssp             BSCEEEECTTSCCCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTT
T ss_pred             CccceeeccCCCcEEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCC
Confidence            345555565544433333 3345678999998664777777778999999988655  2222222223446788887456


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCCC
Q 046899          253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-GILNIWDHEKI  321 (407)
Q Consensus       253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~~  321 (407)
                      +++++-...+.|.+.++..      ......+...-.....++++|.+.+|+.+-... +.|...++...
T Consensus       172 ~lY~~d~~~~~I~~~~~dg------~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  235 (386)
T 3v65_B          172 KLYWTDSGTSRIEVANLDG------AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  235 (386)
T ss_dssp             EEEEEETTTTEEEECBTTS------CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             eEEEEcCCCCeEEEEeCCC------CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence            6666666678899988875      222223333335679999999888787776666 78999988753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.82  E-value=0.0003  Score=69.26  Aligned_cols=211  Identities=7%  Similarity=-0.060  Sum_probs=113.1

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCC----CCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCccc
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQ----PNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKST  158 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  158 (407)
                      ...+..|+|.+..+.++++-...+.|+.+++.+.    .....+... ..                      .+.++.+.
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-~~----------------------~P~glavD  461 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQ----------------------APDGLAVD  461 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-C------------------------CCCEECC
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-CC----------------------CcceEEEE
Confidence            3457788898866667767667788999988752    111111000 00                      01111100


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCceeeecc
Q 046899          159 ASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVKVEKA  237 (407)
Q Consensus       159 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~  237 (407)
                      ..+  ...+++-...+.|.+++.........+.........|+++|.+..++++-... +.|..+++.....  ......
T Consensus       462 ~~~--g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~~  537 (699)
T 1n7d_A          462 WIH--SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTE  537 (699)
T ss_dssp             CSS--SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESCS
T ss_pred             eeC--CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEeC
Confidence            000  01122222344455555443322222222223457789998764555554333 7888887764331  112112


Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      .-...+.|+|+|.+++++++-...+.|..+|+..       .....+..   .-.....|++..+  +|+++....+.|.
T Consensus       538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~  608 (699)
T 1n7d_A          538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIF  608 (699)
T ss_dssp             SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-------SCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEE
T ss_pred             CCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-------CceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEE
Confidence            2344578999984566666666678899999864       22222221   1223445666443  5777887889999


Q ss_pred             EEeCCCCCccccccc
Q 046899          315 IWDHEKIGEKQDYGE  329 (407)
Q Consensus       315 vwd~~~~~~~~~~~~  329 (407)
                      .+|..+++.+..+..
T Consensus       609 ~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          609 SANRLTGSDVNLLAE  623 (699)
T ss_dssp             EEETTTEEEEECCCT
T ss_pred             EEEccCCCceEEeec
Confidence            999887776665543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.82  E-value=0.0011  Score=58.39  Aligned_cols=138  Identities=7%  Similarity=-0.051  Sum_probs=86.4

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC---CCCceeeecccCcceEEEEecCC
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG---STPAVKVEKAHNADIHCVDWNPH  250 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~l~~~~~  250 (407)
                      ..|+..|+...+....+ ........++|++.+..++++-..++.|..+++...   .. ..............+++++.
T Consensus        10 ~~I~~i~~~~~~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETT
T ss_pred             CeEEEEECCCcceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc-cEEEEeCCCCCcCEEEEeec
Confidence            34555555554443333 234567899999876467777777899999998761   21 12222222234578888863


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCC
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAED-GILNIWDHEK  320 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~  320 (407)
                      ++++.++-...+.|.++|+..       .....+ ...-.....++++|.+.+|+.+.... +.|...++..
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g-------~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKG-------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTS-------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCeEEEEECCCCEEEEEeCCC-------CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            555666666778999999875       333332 32335679999999777787666544 7888888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.78  E-value=0.0033  Score=53.16  Aligned_cols=114  Identities=8%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--CCCCceeee-------cccCcceEEEEecCCCCCEEEEEeCCCcE
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARS--GSTPAVKVE-------KAHNADIHCVDWNPHDVNLILTGSADNSI  264 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~l~tg~~dg~i  264 (407)
                      ......|+|+|.+ +.|.++.+.....+|.++.  ... .....       ..+...+.+++++|..+++++.......+
T Consensus       120 N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g~~~~~-~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L  197 (255)
T 3qqz_A          120 NCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNGLLSSN-ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL  197 (255)
T ss_dssp             SSCCEEEEEETTT-TEEEEEEESSSEEEEEEESTTCSS-CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             cCCcceEEEeCCC-CEEEEEECcCCceEEEEcccccCC-ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence            4557899999988 4455555544555555541  110 11111       11234578999999778888888888899


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCC---------CCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~  318 (407)
                      ..+|...       +++..+.-..         ..-..|+|.++|. |+++ ++-+.+..+.-
T Consensus       198 ~~~d~~g-------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          198 QEVTLVG-------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEECTTC-------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEEC
T ss_pred             EEEcCCC-------CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEEe
Confidence            9999774       5555544321         3679999999997 6644 66666666643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.78  E-value=0.00033  Score=58.52  Aligned_cols=139  Identities=4%  Similarity=-0.078  Sum_probs=95.9

Q ss_pred             CCCCCCCCCCcCceeeEeecccC-EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCC
Q 046899          174 NGDKPLESPSIGARGKYLGHEDT-VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV  252 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  252 (407)
                      +.++.+|..+++.+....-.... -..++..  +..+++..-.++.+.+||..+.+  .+.++... ..-..++.   ++
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~-~~Gwglt~---dg  114 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT--PRARFRYP-GEGWALTS---DD  114 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEECS-SCCCEEEE---CS
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--EEEEEeCC-CCceEEee---CC
Confidence            46788888888888777533221 1234443  33566666779999999999887  45555432 33356664   34


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCC-----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccc
Q 046899          253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDY  327 (407)
Q Consensus       253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~  327 (407)
                      ..|+.+..++.|.++|..+      .+.+.++.-..     ..++.+.|. +|+ |+|....+..|.+.|..+++.+..+
T Consensus       115 ~~L~vSdgs~~l~~iDp~t------~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          115 SHLYMSDGTAVIRKLDPDT------LQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             SCEEEECSSSEEEEECTTT------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCC------CeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEE
Confidence            4555555688999999999      77777776422     345677776 565 7777777889999999998887766


Q ss_pred             c
Q 046899          328 G  328 (407)
Q Consensus       328 ~  328 (407)
                      .
T Consensus       187 d  187 (243)
T 3mbr_X          187 D  187 (243)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.76  E-value=0.013  Score=58.29  Aligned_cols=215  Identities=8%  Similarity=-0.033  Sum_probs=116.3

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCC---cccccCcCCCCCCCCCcEEEEeccccccccccCCCCC
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPN---RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSA  155 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~  155 (407)
                      +......+..|+|.+.++.++++-...+.|+.+++.....   ...+.......+.                      ++
T Consensus       419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~----------------------GL  476 (791)
T 3m0c_C          419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD----------------------GL  476 (791)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC----------------------EE
T ss_pred             eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc----------------------ee
Confidence            3445667889999987778888877788899998875321   1111110000000                      00


Q ss_pred             cccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCceee
Q 046899          156 KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVKV  234 (407)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~  234 (407)
                      ++-..+  ...+++-...+.|.+.++........+.........|+++|.+..++++-... +.|...++....  ....
T Consensus       477 AvD~~~--~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~~~l  552 (791)
T 3m0c_C          477 AVDWIH--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSL  552 (791)
T ss_dssp             EEETTT--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEE
T ss_pred             eeeecC--CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--eEEE
Confidence            000000  01112222233444444443222222223345678999999764666554333 789988887444  2223


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC--CCCCEEEEEEcCCCCCEEEEeeCCCe
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGI  312 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~ll~s~~~d~~  312 (407)
                      ....-...+.|++++.+++++++=...+.|..+++..      ......+..  .-....+|++.  +.+|+.+-...+.
T Consensus       553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG------~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~  624 (791)
T 3m0c_C          553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA  624 (791)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred             EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC------CceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE
Confidence            3333356789999984444444444567899999875      222222222  22345677764  3458778778889


Q ss_pred             EEEEeCCCCCccccc
Q 046899          313 LNIWDHEKIGEKQDY  327 (407)
Q Consensus       313 i~vwd~~~~~~~~~~  327 (407)
                      |...|..+++.+..+
T Consensus       625 I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          625 IFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEETTTCCCCEEE
T ss_pred             EEEEeCCCCcceEEe
Confidence            999987766554443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.72  E-value=0.0032  Score=54.97  Aligned_cols=114  Identities=11%  Similarity=0.102  Sum_probs=78.8

Q ss_pred             EEEEEE---CCCCCcEEEEEe-------------CCCcEEEEEcC---CCCCCceeeeccc-----------CcceEEEE
Q 046899          197 VEDVQF---CPSSAQEFCSVG-------------DDSCLILWDAR---SGSTPAVKVEKAH-----------NADIHCVD  246 (407)
Q Consensus       197 v~~l~~---~~~~~~~l~s~~-------------~dg~i~iwd~~---~~~~~~~~~~~~~-----------~~~v~~l~  246 (407)
                      +..|.|   .|++ .++++..             .+..|..||+.   +++......+...           ......++
T Consensus        65 ~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva  143 (334)
T 2p9w_A           65 MSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA  143 (334)
T ss_dssp             EEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred             eeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence            468899   5876 6777543             26789999998   6663222222211           12478999


Q ss_pred             ecCCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCCceeeec------CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          247 WNPHDVNLILTGSAD-NSIHMFDRRKLTSDGVGSPIHKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       247 ~~~~~~~~l~tg~~d-g~i~vwd~~~~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      .++ +|+..++++.- +.|..++...       +.+..+.      ......+.|+++|+|..|++.-+ ++.+.-+|+.
T Consensus       144 vD~-~GnaYVt~s~~~~~I~rV~pdG-------~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~  214 (334)
T 2p9w_A          144 QDR-DGNSYVAFALGMPAIARVSADG-------KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS  214 (334)
T ss_dssp             ECT-TSCEEEEEEESSCEEEEECTTS-------CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred             ECC-CCCEEEeCCCCCCeEEEEeCCC-------CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence            999 89999998888 8877777664       3333321      11223679999999998876666 9999999988


Q ss_pred             C
Q 046899          320 K  320 (407)
Q Consensus       320 ~  320 (407)
                      .
T Consensus       215 ~  215 (334)
T 2p9w_A          215 K  215 (334)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.72  E-value=0.023  Score=56.94  Aligned_cols=138  Identities=11%  Similarity=0.087  Sum_probs=88.3

Q ss_pred             ccccCCCCCCCCCCCCcCceeeEee-------cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec----
Q 046899          168 ASKSGGNGDKPLESPSIGARGKYLG-------HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK----  236 (407)
Q Consensus       168 ~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----  236 (407)
                      -.++.++.+..++...... ..+..       ....|.++...++| + |..|+.++-|..||..++.  ......    
T Consensus       324 Wigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~  398 (795)
T 4a2l_A          324 WLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQR--FTSYTLQEDE  398 (795)
T ss_dssp             EEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCC--EEEECCC---
T ss_pred             EEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCc--EEEEecCCCC
Confidence            3355555566665443332 12211       23569999998887 4 5567788789999987765  221111    


Q ss_pred             ----ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-----CCCCCEEEEEEcCCCCCEEEEe
Q 046899          237 ----AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-----GHSAAVLCVQWSPDKSSVFGSS  307 (407)
Q Consensus       237 ----~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~ll~s~  307 (407)
                          .....|.++..++ +++.|..|+.++-+..||.++      ++ ...+.     .....|.++...++|. |. .|
T Consensus       399 ~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~------~~-~~~~~~~~~~l~~~~v~~i~~d~~g~-lw-ig  468 (795)
T 4a2l_A          399 SARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNS------GQ-VENFNQRNSQLVNENVYAILPDGEGN-LW-LG  468 (795)
T ss_dssp             ---CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTT------CC-EEEECTTTSCCSCSCEEEEEECSSSC-EE-EE
T ss_pred             cccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCC------Cc-EEEeecCCCCcCCCeeEEEEECCCCC-EE-EE
Confidence                1235789999888 777566777777799999886      33 33332     1345799999998888 44 34


Q ss_pred             eCCCeEEEEeCCCC
Q 046899          308 AEDGILNIWDHEKI  321 (407)
Q Consensus       308 ~~d~~i~vwd~~~~  321 (407)
                      +.+ -+.+||..+.
T Consensus       469 t~~-Gl~~~~~~~~  481 (795)
T 4a2l_A          469 TLS-ALVRFNPEQR  481 (795)
T ss_dssp             ESS-CEEEEETTTT
T ss_pred             ecC-ceeEEeCCCC
Confidence            444 4888998764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.70  E-value=0.0016  Score=64.81  Aligned_cols=116  Identities=16%  Similarity=0.089  Sum_probs=66.9

Q ss_pred             EEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEeC---CCcEEEEe
Q 046899          198 EDVQFCPSSAQEFCSVGDD-----SCLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSA---DNSIHMFD  268 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~---dg~i~vwd  268 (407)
                      ..++|+|++. .|+....|     ..|..+++.++.......+. ........+.|+| ++++|+....   ...|.++|
T Consensus       224 ~~~~WspDg~-~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d  301 (751)
T 2xe4_A          224 GEIVWGPDHT-SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLD  301 (751)
T ss_dssp             SCCEECSSTT-EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEE
T ss_pred             eeEEEecCCC-EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEE
Confidence            3578999984 44444443     36888888765421122222 2234466889999 8888776553   34688889


Q ss_pred             CCCCCCCCCCCc-eeee-cCCCCCEEEEEEcCCCCCEEEEeeCC----CeEEEEeCCC
Q 046899          269 RRKLTSDGVGSP-IHKF-EGHSAAVLCVQWSPDKSSVFGSSAED----GILNIWDHEK  320 (407)
Q Consensus       269 ~~~~~~~~~~~~-~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d----~~i~vwd~~~  320 (407)
                      +....    .+. +..+ ........++.|+. |..|+.....+    ..|..+|+.+
T Consensus       302 ~~~~~----~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          302 LRKGN----AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             SSSCT----TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCC----CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            87621    122 1333 33445666676654 44455455443    3677777764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.67  E-value=0.0022  Score=61.65  Aligned_cols=59  Identities=17%  Similarity=0.181  Sum_probs=39.3

Q ss_pred             CcEEEEEcCCCCCCceeeec--ccC--------cceEEEEec-CCCC---CEEEEEeCCCcEEEEeCCCCCCCCCCCcee
Q 046899          217 SCLILWDARSGSTPAVKVEK--AHN--------ADIHCVDWN-PHDV---NLILTGSADNSIHMFDRRKLTSDGVGSPIH  282 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~~--~~~--------~~v~~l~~~-~~~~---~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  282 (407)
                      +.|..+|.++++  ....++  .|.        .++. +... . ++   ..++.++.+|.++++|.++      ++++.
T Consensus       291 ~~v~AlD~~TG~--~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw  360 (582)
T 1flg_A          291 SGQVGVDPSSGE--VKWFYQHTPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVDRSN------GKLQN  360 (582)
T ss_dssp             SEEEEECTTTCC--EEEEEESSTTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEETTT------CCEEE
T ss_pred             ceEEEEeCCCCC--EEEEEeCCCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEECCC------CCEec
Confidence            689999999998  444432  232        1222 2222 3 45   4788899999999999988      77766


Q ss_pred             eec
Q 046899          283 KFE  285 (407)
Q Consensus       283 ~~~  285 (407)
                      .+.
T Consensus       361 ~~~  363 (582)
T 1flg_A          361 AFP  363 (582)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.59  E-value=0.0019  Score=62.11  Aligned_cols=75  Identities=15%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             EEECCCCCcEEEEEeCC----------------CcEEEEEcCCCCCCceeeecc--cC--------cceEEEEec-CCCC
Q 046899          200 VQFCPSSAQEFCSVGDD----------------SCLILWDARSGSTPAVKVEKA--HN--------ADIHCVDWN-PHDV  252 (407)
Q Consensus       200 l~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~--~~--------~~v~~l~~~-~~~~  252 (407)
                      +++.+.. .+++.++.+                +.|..+|.++++  ....++.  |.        .++. +... . ++
T Consensus       246 ~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~--~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G  320 (599)
T 1w6s_A          246 YAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE--AKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DG  320 (599)
T ss_dssp             CEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC--EEEEEESSTTCSSCCCCCCCCEE-EEEECT-TS
T ss_pred             eeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc--eeeEeecCCCccccccCCCccEE-Eecccc-CC
Confidence            3455655 456666554                379999999998  4444332  21        1222 2322 3 56


Q ss_pred             ---CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec
Q 046899          253 ---NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE  285 (407)
Q Consensus       253 ---~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~  285 (407)
                         ..++.++.+|.+.++|.++      ++++....
T Consensus       321 ~~~~~v~~~~~~G~l~~lD~~t------G~~lw~~~  350 (599)
T 1w6s_A          321 KARKLLTHPDRNGIVYTLDRTD------GALVSANK  350 (599)
T ss_dssp             CEEEEEEEECTTSEEEEEETTT------CCEEEEEE
T ss_pred             cEEEEEEEECCCcEEEEEECCC------CCEeeccc
Confidence               5778889999999999998      77776554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=0.0069  Score=55.87  Aligned_cols=118  Identities=7%  Similarity=0.086  Sum_probs=74.2

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCC----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDS----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                      ......|+|++++..++++...++    .+..++. .+.......+. .......++++|.++.++++-...+.|..+|.
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            345788999999933555554332    3444443 33311112222 12345678899955666666667789999998


Q ss_pred             CCCCCCCCCCc--eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          270 RKLTSDGVGSP--IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       270 ~~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      ..      ...  +..... ......++|+|+|++|+++-...+.|..++...
T Consensus       256 ~~------~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          256 TT------QETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TT------TEEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CC------CcEEEEEEcCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            76      332  222222 234689999999998877877889999988663

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.50  E-value=0.0056  Score=55.90  Aligned_cols=145  Identities=7%  Similarity=-0.046  Sum_probs=91.7

Q ss_pred             ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--CCceeeecccCcceEEEEe
Q 046899          170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS--TPAVKVEKAHNADIHCVDW  247 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~  247 (407)
                      .+....|+..++........ ......+..|+|++.+..++++-...+.|+.+++....  ................+++
T Consensus        88 ~~~~~~I~~i~l~~~~~~~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           88 FTNRHEVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             EEETTEEEEECTTSCSCEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             EeccceeEEEccCCcceeEe-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            34445666666665444333 33456788999998764677777778899999987521  0022233223445678888


Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC-CCeEEEEeCCCC
Q 046899          248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE-DGILNIWDHEKI  321 (407)
Q Consensus       248 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~-d~~i~vwd~~~~  321 (407)
                      ++.+++++++-...+.|.+.++..      ......+...-.....|+++|.+.+|+.+-.. .+.|...++...
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g------~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~  235 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKG------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  235 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTT------CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred             EecCCceEEEECCCCeEEEEeCCC------CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence            874566666666778999999875      33333333334457999999977777766533 478888888753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.50  E-value=0.0056  Score=58.73  Aligned_cols=61  Identities=18%  Similarity=0.109  Sum_probs=42.2

Q ss_pred             CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       261 dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                      +|.|..||+.+      ++.+.++... .++....+...+..++ .++.|+.|+.+|.++++.+-++..
T Consensus       443 ~g~l~a~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v~-~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTT------GKAKWTKWEK-FAAWGGTLYTKGGLVW-YATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTT------CCEEEEEEES-SCCCSBCEEETTTEEE-EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEECCC------CCEEEEecCC-CCccceeEEECCCEEE-EEcCCCeEEEEECCCCCEEEEEeC
Confidence            57899999998      7877776532 2222222232344465 688999999999999988866654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.47  E-value=0.0026  Score=62.31  Aligned_cols=144  Identities=12%  Similarity=0.142  Sum_probs=88.5

Q ss_pred             CCCCCCCCcCceeeEee--cc-------cCEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCCCCceeeecccC-----
Q 046899          176 DKPLESPSIGARGKYLG--HE-------DTVEDVQFCPSSA--QEFCSVGDDSCLILWDARSGSTPAVKVEKAHN-----  239 (407)
Q Consensus       176 i~i~d~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----  239 (407)
                      +..+|..+++.+-.++.  |.       .+.....+..++.  ..++.++.+|.+.++|.++++  .+.......     
T Consensus       272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~--~l~~~~~~~~~w~~  349 (668)
T 1kv9_A          272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK--LISAEKFGKVTWAE  349 (668)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC--EEEEEESSCCCSEE
T ss_pred             EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC--Eecccccccccccc
Confidence            66678888887766653  21       2222222222441  268889999999999999988  331111000     


Q ss_pred             -------cce------------------------EEEEecCCCCCEEEEE------------------------------
Q 046899          240 -------ADI------------------------HCVDWNPHDVNLILTG------------------------------  258 (407)
Q Consensus       240 -------~~v------------------------~~l~~~~~~~~~l~tg------------------------------  258 (407)
                             .++                        ..++++| +..+++..                              
T Consensus       350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  428 (668)
T 1kv9_A          350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (668)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             ccccccCCccccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence                   000                        1256777 44444431                              


Q ss_pred             ------eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899          259 ------SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL  330 (407)
Q Consensus       259 ------~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  330 (407)
                            ..+|.|..||+.+      ++.+.+...+. ++....+...+..+| .++.|+.++.||.++++.+-.+...
T Consensus       429 ~~~p~~~~~g~l~A~D~~t------G~~~W~~~~~~-~~~~~~~~t~gg~vf-~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          429 TDVPAAVVSGALLAWDPVK------QKAAWKVPYPT-HWNGGTLSTAGNLVF-QGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             CCCCGGGCEEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTTEEE-EECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCCCCCccceEEEEeCCC------CcEEEEccCCC-CCcCceeEeCCCEEE-EECCcccchhhhhhcChhheEecCC
Confidence                  1347899999998      88877765432 333333444566454 7889999999999999888766543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.37  E-value=0.0003  Score=69.28  Aligned_cols=115  Identities=5%  Similarity=-0.078  Sum_probs=74.5

Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-CcEEEEeCCCCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-NSIHMFDRRKLTSD  275 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-g~i~vwd~~~~~~~  275 (407)
                      ...|++.+.+.+++++-...+.|.++++....  ..............|+++|.++.++++-... +.|.++++..    
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG----  528 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----  528 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC--EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS----
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCc--eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC----
Confidence            45678886554667776677899999987544  2222222234457889998445444443333 6788887764    


Q ss_pred             CCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          276 GVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       276 ~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                         .....+. ..-...+.|+|+|++..|+++-+..+.|..+|+..
T Consensus       529 ---~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          529 ---VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             ---CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             ---CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence               2222221 12234678999998888887877888999999874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.28  E-value=0.024  Score=49.46  Aligned_cols=102  Identities=13%  Similarity=0.077  Sum_probs=66.4

Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARS-GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD  275 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~  275 (407)
                      .+.|  +|++..++++-...+.|..+|+.. +.......+. .......+++++ +++++++....+.|.++|..     
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-----  241 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-----  241 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-----
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-----
Confidence            3455  677745667777788999999875 3211111111 113456788999 88887777778899999865     


Q ss_pred             CCCCc--eeeecCCCCCEEEEEEc---CCCCCEEEEeeC
Q 046899          276 GVGSP--IHKFEGHSAAVLCVQWS---PDKSSVFGSSAE  309 (407)
Q Consensus       276 ~~~~~--~~~~~~h~~~v~~v~~~---~~~~~ll~s~~~  309 (407)
                        ++.  +..+...-...++++|.   |++..|+++...
T Consensus       242 --G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          242 --RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             --CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             --CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence              344  22343333568999998   888888766653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.26  E-value=0.0055  Score=53.99  Aligned_cols=118  Identities=11%  Similarity=-0.005  Sum_probs=78.8

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~  274 (407)
                      .....++|++.+..++.+-...+.|..+++...... .......-.....+++++.+++++++-...+.|.++++..   
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG---  110 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG---  110 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC---
Confidence            456789999865477777778899999998765421 1122222234567888874566666666778999999875   


Q ss_pred             CCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCC
Q 046899          275 DGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEK  320 (407)
Q Consensus       275 ~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~  320 (407)
                          .....+ ...-.....+++.|.+.+|+.+-. ..+.|...++..
T Consensus       111 ----~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  154 (318)
T 3sov_A          111 ----SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG  154 (318)
T ss_dssp             ----CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred             ----CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence                223333 233456789999997776775553 357888888764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.26  E-value=0.011  Score=57.88  Aligned_cols=104  Identities=13%  Similarity=0.053  Sum_probs=59.0

Q ss_pred             EEEEECCCCCcEEEEEeCCC-----------cEEEEEcCCCCCCceeee--c-ccCcceEEEEecCCCCCEEEEEeCC--
Q 046899          198 EDVQFCPSSAQEFCSVGDDS-----------CLILWDARSGSTPAVKVE--K-AHNADIHCVDWNPHDVNLILTGSAD--  261 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~--~-~~~~~v~~l~~~~~~~~~l~tg~~d--  261 (407)
                      .++.|...+..+++.|+.++           .|.+||..+...  ....  . .....-.++...| ++++++.|+.+  
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~  478 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN--TVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRG  478 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE--EEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBC
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe--eEEccCCCCCCcccCCeEECC-CCCEEEECCcccC
Confidence            44455443337888887543           678888877652  2211  1 1122223445567 88999999865  


Q ss_pred             ---------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC
Q 046899          262 ---------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE  309 (407)
Q Consensus       262 ---------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~  309 (407)
                               ..+.+||..+..    +..+..+...........+.|+++ +++.|+.
T Consensus       479 ~~~~~~~~~~~v~~ydp~t~~----W~~~~~~~~~R~~hs~a~ll~dg~-v~v~GG~  530 (656)
T 1k3i_A          479 IPFEDSTPVFTPEIYVPEQDT----FYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG  530 (656)
T ss_dssp             CTTCCCSBCCCCEEEEGGGTE----EEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             cCcCCCCcccceEEEcCCCCc----eeecCCCCCccccccHhhcCCCcE-EEecCCC
Confidence                     468999987622    222222222222333455678888 6678774

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.25  E-value=0.024  Score=49.87  Aligned_cols=114  Identities=12%  Similarity=0.027  Sum_probs=73.1

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC----------CCcEE
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA----------DNSIH  265 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~----------dg~i~  265 (407)
                      ..+.|+++|++..++++-+..+.|..|++..........+....+ ...+++++ ++++.++...          .+.|.
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~  263 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGI  263 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEE
Confidence            345799999983355555667899999987532111122111223 67899999 7777666544          46788


Q ss_pred             EEeCCCCCCCCCCCceeeecCCC----CCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      .+|..       ++.+..+....    ..++++++. ++. |+++....+.|..+++..
T Consensus       264 ~~d~~-------G~~~~~~~~~~g~~~~~~~~~~~~-~g~-L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          264 KFDEF-------GNILEVIPLPPPFAGEHFEQIQEH-DGL-LYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EECTT-------SCEEEEEECCTTTTTSCCCEEEEE-TTE-EEEECSSCSEEEEEEC--
T ss_pred             EECCC-------CCEEEEEECCCCCccccceEEEEe-CCE-EEEeecCCCceEEEeccc
Confidence            88864       46666665432    346777763 454 777777788999999874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.24  E-value=0.0028  Score=63.06  Aligned_cols=116  Identities=16%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             CEEEEEEC-CCCCcEEE-EEeCCC----cEEEEEcCCC-CCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----Cc
Q 046899          196 TVEDVQFC-PSSAQEFC-SVGDDS----CLILWDARSG-STPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NS  263 (407)
Q Consensus       196 ~v~~l~~~-~~~~~~l~-s~~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~  263 (407)
                      .+...+|+ |+| ++++ +...+|    .|+++|+.++ +. ....+.   .....+.|+| |++.|+....+     ..
T Consensus       175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEE
T ss_pred             EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEe-CCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCE
Confidence            57789999 999 5555 444333    4999999988 52 111111   1134688999 87777666554     25


Q ss_pred             EEEEeCCCCCCCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCCC
Q 046899          264 IHMFDRRKLTSDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEKI  321 (407)
Q Consensus       264 i~vwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~~  321 (407)
                      |.++++.+..    .+....+. ........+.|+|||++|+.+...  ...|.++|+.+.
T Consensus       249 v~~~~lgt~~----~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          249 VWRHVMGKLQ----SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEETTSCG----GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEECCCCc----hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            7788887621    11122222 233456788999999988655543  356888898865

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.17  E-value=0.014  Score=57.98  Aligned_cols=140  Identities=6%  Similarity=-0.040  Sum_probs=87.6

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC--CceeeecccCcceEEEEecCCC
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      ..|+..++....... +......+..|+|++.+..++++-...+.|+.+++.....  .....+.........|++++.+
T Consensus       404 ~~Ir~i~l~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             SSEEEECTTSCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             cceeEeeccCCccee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence            444445554433322 2334556789999986547777777788999999875310  0122332233456678888744


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEeCCCC
Q 046899          252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAED-GILNIWDHEKI  321 (407)
Q Consensus       252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd~~~~  321 (407)
                      ++++++-...+.|.+.++..       .....+ ...-.....|+++|.+.+|+.+-... +.|...++...
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG-------~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKG-------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTS-------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CcEEEEecCCCeEEEEeCCC-------CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            56666666778999999875       333333 23344689999999877787665444 78999988753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.14  E-value=0.0034  Score=57.98  Aligned_cols=136  Identities=12%  Similarity=0.104  Sum_probs=78.6

Q ss_pred             CEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC----cEEEEeC
Q 046899          196 TVEDVQFCP-SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN----SIHMFDR  269 (407)
Q Consensus       196 ~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg----~i~vwd~  269 (407)
                      ....|+++| ++.. |+.+...+.|+.+|+..+.   +..+.........|++++ +++.|+.+.. ++    .+.+++.
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC
Confidence            446789998 3424 4444444889999988655   333333455678999999 8885555554 22    3444543


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc-CCCcccCCCCcCc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE-LKYPIIHPAYSSD  342 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d  342 (407)
                      ...     ......+.. ......++++|++.+|+++-..++.|..++............ ......+++|+|+
T Consensus       213 ~g~-----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pd  280 (430)
T 3tc9_A          213 ESG-----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS  280 (430)
T ss_dssp             GGT-----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTT
T ss_pred             CCc-----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCC
Confidence            321     121123322 234578899994444777777789999999886443111111 1122345666665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.10  E-value=0.034  Score=49.04  Aligned_cols=131  Identities=14%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             cCEEEEEE--CCCC-CcEEEEEeCCCcEEEEEcCC---CC--CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEE
Q 046899          195 DTVEDVQF--CPSS-AQEFCSVGDDSCLILWDARS---GS--TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHM  266 (407)
Q Consensus       195 ~~v~~l~~--~~~~-~~~l~s~~~dg~i~iwd~~~---~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~v  266 (407)
                      ..+..+++  +|.. ..++++...+|.+..|++..   +.  ...+..+ ...+.+-.+..++ ....|+.+-.+.-|..
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~  205 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADD-EYGRLYIAEEDEAIWK  205 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcC-CCCeEEEecccceEEE
Confidence            45566777  7754 23677888899999999843   21  1133443 3356788888988 7788889888877777


Q ss_pred             EeCCCCCCCCCCCceeeec-CC-CCCEEEEEE--cCCCC-CEEEEeeCCCeEEEEeCC-CCCcccccc
Q 046899          267 FDRRKLTSDGVGSPIHKFE-GH-SAAVLCVQW--SPDKS-SVFGSSAEDGILNIWDHE-KIGEKQDYG  328 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~-~h-~~~v~~v~~--~~~~~-~ll~s~~~d~~i~vwd~~-~~~~~~~~~  328 (407)
                      +|.+.... ..++.+..+. ++ ...+..|++  .++++ |||+|+-.+++..+||.. +.+.+..+.
T Consensus       206 ~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          206 FSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            77553110 0033454442 22 246888888  55666 788888778999999997 555566664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.08  E-value=0.17  Score=48.97  Aligned_cols=200  Identities=8%  Similarity=-0.054  Sum_probs=113.3

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------CCcEEEEeccccccccccCCCCCc
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------DQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      -..+..|+|.+.++.++.+-..++.|..+++........+... ...|..      .+.+.+-|.               
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-~~~P~GlAvD~~~~~LY~tD~---------------   99 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-LDYPEGMAVDWLGKNLYWADT---------------   99 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEET---------------
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-CCCcceEEEEeCCCEEEEEEC---------------
Confidence            3568899999978888888888899999998754322222111 111110      111111111               


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEE-eCCCcEEEEEcCCCCCCceeee
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSV-GDDSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~  235 (407)
                                     ..+.|.+.+.............-.....|+++|....++++- +..+.|...++....   ...+
T Consensus       100 ---------------~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---~~~l  161 (628)
T 4a0p_A          100 ---------------GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---RTTL  161 (628)
T ss_dssp             ---------------TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEE
T ss_pred             ---------------CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---eEEE
Confidence                           112222222221111111112334568999998653555554 235788888876544   2222


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      ...-...+.|++++.++++..+=...+.|..+|+..      ... ..+...-.....+++..  .+|+.+-...+.|..
T Consensus       162 ~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG------~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG------LNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIER  232 (628)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEE
T ss_pred             ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC------Cce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEE
Confidence            234456789999993344444445567899999875      222 33333334456888865  347777777899999


Q ss_pred             EeCCCCCccc
Q 046899          316 WDHEKIGEKQ  325 (407)
Q Consensus       316 wd~~~~~~~~  325 (407)
                      .|..+++...
T Consensus       233 ~dk~tg~~~~  242 (628)
T 4a0p_A          233 ANKTSGQNRT  242 (628)
T ss_dssp             EETTTCCSCE
T ss_pred             EECCCCCceE
Confidence            9977665443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.01  E-value=0.33  Score=48.49  Aligned_cols=139  Identities=14%  Similarity=0.117  Sum_probs=87.9

Q ss_pred             cccccCCCCCCCCCCCCcCceeeEee--------cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLG--------HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--  236 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  236 (407)
                      +-.|+.++.+..++..+++.......        ....|.++...+++ .+|..|+.++-|..+|..+++   ...+.  
T Consensus       370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~---~~~~~~~  445 (795)
T 4a2l_A          370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQ---VENFNQR  445 (795)
T ss_dssp             EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCC---EEEECTT
T ss_pred             EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCc---EEEeecC
Confidence            44456666777777765543222111        23578999988877 546667777789999988766   22221  


Q ss_pred             ---ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-------CCCCCEEEEEEcCCCCCEEEE
Q 046899          237 ---AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-------GHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       237 ---~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~ll~s  306 (407)
                         .....|.++..++ ++++.+ |+.+ -+.+||..+      ++ ...+.       .....|.++...++|. |. .
T Consensus       446 ~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~------~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-i  513 (795)
T 4a2l_A          446 NSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQ------RS-FTTIEKEKDGTPVVSKQITTLFRDSHKR-LW-I  513 (795)
T ss_dssp             TSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTT------TE-EEECCBCTTCCBCCCCCEEEEEECTTCC-EE-E
T ss_pred             CCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCC------Ce-EEEccccccccccCCceEEEEEECCCCC-EE-E
Confidence               1345789999888 666544 4444 488899876      32 22221       1246799999999998 44 3


Q ss_pred             eeCCCeEEEEeCCCCC
Q 046899          307 SAEDGILNIWDHEKIG  322 (407)
Q Consensus       307 ~~~d~~i~vwd~~~~~  322 (407)
                      |+. +-+..||..+.+
T Consensus       514 gt~-~Gl~~~~~~~~~  528 (795)
T 4a2l_A          514 GGE-EGLSVFKQEGLD  528 (795)
T ss_dssp             EES-SCEEEEEEETTE
T ss_pred             EeC-CceEEEeCCCCe
Confidence            444 458888877643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.99  E-value=0.054  Score=49.88  Aligned_cols=116  Identities=13%  Similarity=0.136  Sum_probs=70.8

Q ss_pred             cCEEEEEECCCCCcEEEEEeCC---C-cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDD---S-CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRR  270 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  270 (407)
                      .....|++++++ +++++....   . .+...+...... ....+ ........++++|.+++++++-..++.|+.+|..
T Consensus       182 ~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~~~~-~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          182 GQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRASGFT-ERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             SCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGGTTC-CEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCccEEEECCCC-CEEEEcCCCCcccceEEEEECCCCee-ccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            457899999999 555555422   1 233333322221 01111 1233446788888556666665667889999987


Q ss_pred             CCCCCCCCCceeee-cC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          271 KLTSDGVGSPIHKF-EG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       271 ~~~~~~~~~~~~~~-~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      .      +.....+ .. ....-..++|+|++.+|+++-...+.|+.+++.
T Consensus       259 ~------g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          259 T------GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             T------CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             C------CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            5      4442222 11 122335799999999787787778999998865

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.97  E-value=0.11  Score=50.11  Aligned_cols=117  Identities=4%  Similarity=-0.076  Sum_probs=79.3

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTS  274 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~  274 (407)
                      ....|++.+.+.+++++-...+.|.+.++....  ........-.....|+++|.++.++.+-- ..+.|...++..   
T Consensus        85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG---  159 (619)
T 3s94_A           85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG---  159 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred             CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC---
Confidence            467899988665777777788999999987544  22222233445678999994455555532 246777777764   


Q ss_pred             CCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          275 DGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       275 ~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                          .....+. ..-.....|++++++..|+.+-...+.|...|+...
T Consensus       160 ----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          160 ----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             ----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             ----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence                3333332 234467999999988778877777889999998753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.90  E-value=0.024  Score=49.57  Aligned_cols=156  Identities=11%  Similarity=0.088  Sum_probs=96.1

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc----c--CcceEEEEe---cCCCCCEEEEEe-------
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA----H--NADIHCVDW---NPHDVNLILTGS-------  259 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~--~~~v~~l~~---~~~~~~~l~tg~-------  259 (407)
                      .-.+++|++....++++.-..++|..||...+..... .+..    .  ...+..|.|   .| +++++++..       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence            3457899886635555555799999999875541111 2221    1  114579999   68 677777544       


Q ss_pred             ------CCCcEEEEeCC---CCCCCCCCCceeeecC-------------CCCCEEEEEEcCCCCCEEEEeeCC-CeEEEE
Q 046899          260 ------ADNSIHMFDRR---KLTSDGVGSPIHKFEG-------------HSAAVLCVQWSPDKSSVFGSSAED-GILNIW  316 (407)
Q Consensus       260 ------~dg~i~vwd~~---~~~~~~~~~~~~~~~~-------------h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vw  316 (407)
                            .+..+..||+.   +      ++.+.....             -......++..++|. ..++++.- +.|...
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~t------g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSEN------SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARV  164 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTT------CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEE
T ss_pred             cccccCCCCEEEEEcCCcCCC------CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEE
Confidence                  26789999998   5      555543331             113588999999998 66788888 887777


Q ss_pred             eCCCCCccccccc------CCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          317 DHEKIGEKQDYGE------LKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       317 d~~~~~~~~~~~~------~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +.... ....+..      .....+++++.||                  +..|+.....+.|..+|+.
T Consensus       165 ~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pd------------------g~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          165 SADGK-TVSTFAWESGNGGQRPGYSGITFDPH------------------SNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             CTTSC-CEEEEEECCCCSSSCCSCSEEEEETT------------------TTEEEEESSSSSEEEEECS
T ss_pred             eCCCC-EEeeeeecCCCcccccCcceEEEeCC------------------CCEEEEEcCCCeEEEEcCC
Confidence            76542 2222211      1111334455444                  5555544448888888876

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.76  E-value=0.052  Score=45.81  Aligned_cols=120  Identities=8%  Similarity=0.190  Sum_probs=79.1

Q ss_pred             eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          191 LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       191 ~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                      .+-...+..++|+|++..++++...++.|...|.. ++  ....+. .-....-.|++.+ ++.++++.-.++.+.++++
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~--v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD--LIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC--EEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC--EEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence            34456799999999875677778889999999987 55  344432 1124567888888 7777666556788999988


Q ss_pred             CCCCCCCCCCceeeec------CCCCCEEEEEEcCCCCCEEEEeeCCC-eEEEEe
Q 046899          270 RKLTSDGVGSPIHKFE------GHSAAVLCVQWSPDKSSVFGSSAEDG-ILNIWD  317 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~ll~s~~~d~-~i~vwd  317 (407)
                      .....   ...+....      ..+.....|+|+|.+..|+++.-.+. .|..|+
T Consensus        99 ~~~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           99 TPNSE---VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             CTTCC---EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             CCCCe---eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            76210   01122221      13445799999999987876555544 444444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.092  Score=48.89  Aligned_cols=122  Identities=8%  Similarity=0.106  Sum_probs=71.7

Q ss_pred             CEEEEEE-------CCCCCcEEEEEeCCC------cEEEEEcCC-CCCCc---eeeecccCcceEEEEecCCCCCEEEEE
Q 046899          196 TVEDVQF-------CPSSAQEFCSVGDDS------CLILWDARS-GSTPA---VKVEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       196 ~v~~l~~-------~~~~~~~l~s~~~dg------~i~iwd~~~-~~~~~---~~~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                      ....|+|       ++++..++++...++      .|.+++... +....   ...+... .....++.+|.++.++++-
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEE
Confidence            4678999       999833444444432      266666333 12110   0122111 2345778899666667777


Q ss_pred             eCCCcEEEEeCC-------CCCC------CCC--CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          259 SADNSIHMFDRR-------KLTS------DGV--GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       259 ~~dg~i~vwd~~-------~~~~------~~~--~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ..++.|..+|+.       +...      ...  .+.+.... .....+.|+|+|+|..|+++-.....|+.++..
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            778899999987       3110      000  00122222 234568999999999777677778899997654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.56  E-value=0.02  Score=52.75  Aligned_cols=117  Identities=9%  Similarity=0.123  Sum_probs=69.6

Q ss_pred             CEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC---C-cEEEEeC
Q 046899          196 TVEDVQFCPS--SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD---N-SIHMFDR  269 (407)
Q Consensus       196 ~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d---g-~i~vwd~  269 (407)
                      ....|+|+|+  +..++++-.. +.|+.+|..++.   +..+.........+++++ +++++++....   . .+..++.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~---v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY---VDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE---EEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCE---EEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEEC
Confidence            3468899985  3255544433 899999997766   333334445688999999 77855443311   1 2333433


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      ...     ......+. .-.....++++|++..|+++-..++.|+.+|..++..
T Consensus       215 ~~~-----~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~  262 (433)
T 4hw6_A          215 ASG-----FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL  262 (433)
T ss_dssp             GGT-----TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred             CCC-----eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence            220     11111222 1234577899994444776766788999999886544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.52  E-value=0.017  Score=53.76  Aligned_cols=117  Identities=11%  Similarity=0.109  Sum_probs=73.8

Q ss_pred             CEEEEEECCC-CCcEEEEEeCCCcEEEEEcCCCCCCceeeecc---cCcceEEEEe-------cCCCCCEEEEEeCCC--
Q 046899          196 TVEDVQFCPS-SAQEFCSVGDDSCLILWDARSGSTPAVKVEKA---HNADIHCVDW-------NPHDVNLILTGSADN--  262 (407)
Q Consensus       196 ~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~l~~-------~~~~~~~l~tg~~dg--  262 (407)
                      ....|+|+|. +.+++++-...+.|++.|+.++.  .......   .......|+|       ++ +++.|+++...+  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCC
Confidence            4678999984 43666666556789999988766  2222221   1235789999       99 777666665543  


Q ss_pred             -----cEEEEeCCCCCCCCCCC--c-eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          263 -----SIHMFDRRKLTSDGVGS--P-IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       263 -----~i~vwd~~~~~~~~~~~--~-~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                           .|.+++.....   ...  . ...+.... ....++++|++.+|+++-..++.|..+|+.
T Consensus       217 ~~~~~~V~~i~r~~~G---~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          217 GDESPSVYIIKRNADG---TFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             GGGEEEEEEEECCTTS---CCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             cccCceEEEEecCCCC---ceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence                 26677633210   011  0 01222111 345788999777788888889999999987

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.47  E-value=0.82  Score=45.52  Aligned_cols=137  Identities=11%  Similarity=0.066  Sum_probs=81.9

Q ss_pred             cccCCCCCCCCCCCCcCceeeE---eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcce
Q 046899          169 SKSGGNGDKPLESPSIGARGKY---LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADI  242 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v  242 (407)
                      .++.++.+..++..+.......   ......|.++...+++ . |..|+.++-|..+|.++++   ...+.   .....|
T Consensus       378 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~v  452 (781)
T 3v9f_A          378 IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG-N-LWFGTYLGNISYYNTRLKK---FQIIELEKNELLDV  452 (781)
T ss_dssp             EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS-C-EEEEETTEEEEEECSSSCE---EEECCSTTTCCCCE
T ss_pred             EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC-C-EEEEeccCCEEEEcCCCCc---EEEeccCCCCCCeE
Confidence            3444555666665443221111   1134678999988877 4 4557777779999987665   22221   234678


Q ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-----CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-----HSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      .++..++ +++ |..|+. +-+..||..+      .+.......     ....|.++...++|. |. .|+.++-+..+|
T Consensus       453 ~~i~~d~-~g~-lwigt~-~Gl~~~~~~~------~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~  521 (781)
T 3v9f_A          453 RVFYEDK-NKK-IWIGTH-AGVFVIDLAS------KKVIHHYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYT  521 (781)
T ss_dssp             EEEEECT-TSE-EEEEET-TEEEEEESSS------SSCCEEECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEEC
T ss_pred             EEEEECC-CCC-EEEEEC-CceEEEeCCC------CeEEecccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEe
Confidence            8998887 555 444555 4588899876      332221111     146799999999988 44 344434477788


Q ss_pred             CCCC
Q 046899          318 HEKI  321 (407)
Q Consensus       318 ~~~~  321 (407)
                      ..+.
T Consensus       522 ~~~~  525 (781)
T 3v9f_A          522 PDMQ  525 (781)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            7653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.46  E-value=0.34  Score=50.42  Aligned_cols=43  Identities=14%  Similarity=-0.024  Sum_probs=32.0

Q ss_pred             eEEEeeCCCceEEEEEeCC-----CCeEEEEeeC-CCcEEEEeCcCCCC
Q 046899           76 KFKTIIHPGEVNRIRELPQ-----NSKIVATHTD-SPDVLIWDVEAQPN  118 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~-----~~~~l~tg~~-dg~i~vwd~~~~~~  118 (407)
                      ......-.++|.|+++.|.     .++++|.|.. |++|+|+++...+.
T Consensus       546 ~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~  594 (1158)
T 3ei3_A          546 QISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL  594 (1158)
T ss_dssp             EEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE
T ss_pred             eecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe
Confidence            3344445678999998752     2479999997 99999999986543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.35  E-value=0.058  Score=47.54  Aligned_cols=147  Identities=6%  Similarity=0.063  Sum_probs=92.0

Q ss_pred             cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCC----CCc--E-EEEEeC--CCcEEEEEcCCCCCCceeeecc
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPS----SAQ--E-FCSVGD--DSCLILWDARSGSTPAVKVEKA  237 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~----~~~--~-l~s~~~--dg~i~iwd~~~~~~~~~~~~~~  237 (407)
                      ++.....+.+.++|+ .++.++.+..  +.++.+..-|.    +..  + +++.-.  +++|++|++..... .+.....
T Consensus        43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~~  118 (355)
T 3amr_A           43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMTD  118 (355)
T ss_dssp             EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECSC
T ss_pred             EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeeccc
Confidence            444445667888998 7888887753  56777776652    101  2 333333  58999998742221 1322211


Q ss_pred             ------cC-cceEEEEe--cCCCCC-EEEEEeCCCcEEEEeCCCCCCC-CCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899          238 ------HN-ADIHCVDW--NPHDVN-LILTGSADNSIHMFDRRKLTSD-GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       238 ------~~-~~v~~l~~--~~~~~~-~l~tg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                            .. ..+..+++  +|..+. ++++...+|.+..|++...... ...+.+++|.. .+.+..+...+...+|+ .
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly-v  196 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY-I  196 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE-E
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE-E
Confidence                  11 55677777  774443 6778888899999998431110 00466778775 45788888988877776 7


Q ss_pred             eeCCCeEEEEeCC
Q 046899          307 SAEDGILNIWDHE  319 (407)
Q Consensus       307 ~~~d~~i~vwd~~  319 (407)
                      +-.|.-|..+|.+
T Consensus       197 ~eEd~GIw~~da~  209 (355)
T 3amr_A          197 AEEDEAIWKFSAE  209 (355)
T ss_dssp             EETTTEEEEEECS
T ss_pred             ecccceEEEEeCC
Confidence            7788777777755

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.35  E-value=0.81  Score=44.18  Aligned_cols=117  Identities=5%  Similarity=-0.056  Sum_probs=77.7

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS-ADNSIHMFDRRKLTS  274 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~  274 (407)
                      ....+++.+.+.+++++-+..+.|.+.++....  ........-....+|+++|..+.++.+-. ..+.|...++.-   
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~--~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG---  467 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM--RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG---  467 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCCe--EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC---
Confidence            445788886554777777778999999987544  22222233456789999994455555532 236777777653   


Q ss_pred             CCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          275 DGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       275 ~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                          .....+ ...-...+.|++++++..|+.+=+..+.|...++...
T Consensus       468 ----~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          468 ----SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             ----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             ----CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence                322333 2234567899999987778777677788999998653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.35  E-value=0.094  Score=51.20  Aligned_cols=116  Identities=12%  Similarity=0.119  Sum_probs=72.6

Q ss_pred             EEEECC-CCCcEEEEEeCCC-----------cEEEEEcCCCCCCceeeec-ccCcceEEEEecCCCCCEEEEEeC-CCcE
Q 046899          199 DVQFCP-SSAQEFCSVGDDS-----------CLILWDARSGSTPAVKVEK-AHNADIHCVDWNPHDVNLILTGSA-DNSI  264 (407)
Q Consensus       199 ~l~~~~-~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~tg~~-dg~i  264 (407)
                      ..++.| ++ .+++.|+.+.           .+.+||..+.+......+. .+.....++++.+ ++.+++.|+. +..+
T Consensus       190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCE
T ss_pred             eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCce
Confidence            456667 66 7888887543           5889999988743332221 2233334566667 8899999984 4589


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee-CC-----CeEEEEeCCCCC
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA-ED-----GILNIWDHEKIG  322 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~-~d-----~~i~vwd~~~~~  322 (407)
                      .+||..+..    +..+..+..... -.+++..++++ |++.|+ .+     ..+.+||+.+.+
T Consensus       268 ~~yd~~t~~----W~~~~~~~~~R~-~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          268 SLYDSSSDS----WIPGPDMQVARG-YQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEEGGGTE----EEECCCCSSCCS-SCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEecCcCCc----eeECCCCCcccc-ccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCc
Confidence            999987622    233322322111 23455667877 667887 34     579999998754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.29  E-value=0.068  Score=51.30  Aligned_cols=82  Identities=27%  Similarity=0.389  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCE-EEE
Q 046899          216 DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAV-LCV  294 (407)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v-~~v  294 (407)
                      +|.|..||+.+++  ........ .++..-.... .+.+++.|+.||.++.||.++      ++.+.+++...... .-+
T Consensus       465 ~G~l~A~D~~tG~--~~W~~~~~-~~~~~g~~~t-agglvf~g~~dg~l~A~D~~t------G~~lW~~~~~~g~~a~P~  534 (582)
T 1flg_A          465 VGSLRAMDPVSGK--VVWEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKS------GKELWKFQTGSGIVSPPI  534 (582)
T ss_dssp             SEEEEEECTTTCC--EEEEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCE
T ss_pred             cceEEEEECCCCC--EEEEecCC-CCCcccceEe-CCCEEEEECCCCcEEEEECCC------CCEEEEecCCCCcccCce
Confidence            6889999999988  44433222 1221111111 356777899999999999999      99998887633221 125


Q ss_pred             EEcCCCCCEEEEe
Q 046899          295 QWSPDKSSVFGSS  307 (407)
Q Consensus       295 ~~~~~~~~ll~s~  307 (407)
                      .|..+|+..+++.
T Consensus       535 ~y~~~G~qYv~~~  547 (582)
T 1flg_A          535 TWEQDGEQYLGVT  547 (582)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEEECCEEEEEEE
Confidence            5556776444433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.97  E-value=0.29  Score=47.06  Aligned_cols=147  Identities=16%  Similarity=0.139  Sum_probs=88.1

Q ss_pred             cccccCCCCCCCCCCCCcCceeeEeeccc----CEEE-EEECCCCCcEEEEEe------CCCcEEEEEcCCCCCCceeee
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLGHED----TVED-VQFCPSSAQEFCSVG------DDSCLILWDARSGSTPAVKVE  235 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~v~~-l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~  235 (407)
                      +..++.++.+.-+|..+++.+-.......    .+.+ -.. -++  .++.++      .++.|+-+|.++++  ....+
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~--~~W~~  198 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD--KVIIGSSGAELGVRGYLTAYDVKTGE--QVWRA  198 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT--EEEECCBCGGGTCCCEEEEEETTTCC--EEEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC--EEEEEecccccCCCCeEEEEECCCCc--EEEEE
Confidence            45566677888888888887655432210    1111 011 133  344444      37999999999988  33333


Q ss_pred             cccCcc-------------------------------------e-EEEEecCCCCCEEEEEeCC----------------
Q 046899          236 KAHNAD-------------------------------------I-HCVDWNPHDVNLILTGSAD----------------  261 (407)
Q Consensus       236 ~~~~~~-------------------------------------v-~~l~~~~~~~~~l~tg~~d----------------  261 (407)
                      ......                                     + ..+++++ ...+++.+..+                
T Consensus       199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~  277 (599)
T 1w6s_A          199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWT  277 (599)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCcccc
Confidence            211100                                     0 1345566 55667766654                


Q ss_pred             CcEEEEeCCCCCCCCCCCceeeecC--CC--------CCEEEEEEc-CCCC--CEEEEeeCCCeEEEEeCCCCCcccc
Q 046899          262 NSIHMFDRRKLTSDGVGSPIHKFEG--HS--------AAVLCVQWS-PDKS--SVFGSSAEDGILNIWDHEKIGEKQD  326 (407)
Q Consensus       262 g~i~vwd~~~~~~~~~~~~~~~~~~--h~--------~~v~~v~~~-~~~~--~ll~s~~~d~~i~vwd~~~~~~~~~  326 (407)
                      +.|..+|.++      ++.+..++.  |.        .++. +... .+|+  .+++.++.+|.+.+.|.++++.+-.
T Consensus       278 ~sv~Ald~~T------G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  348 (599)
T 1w6s_A          278 MTIFGRDADT------GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (599)
T ss_dssp             SEEEEEETTT------CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceEEEEeCCC------CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence            3799999998      888877654  21        2222 2222 4563  3556788999999999999877643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.70  E-value=1.6  Score=42.11  Aligned_cols=117  Identities=10%  Similarity=0.016  Sum_probs=78.8

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC--cEEEEeCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN--SIHMFDRRKL  272 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~~  272 (407)
                      ..+..|++...+.+++++-+..+.|.+.++. ++. .............+|+++|..+.++.+-....  .|...++.- 
T Consensus       389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~-~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG-  465 (628)
T 4a0p_A          389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRS-VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG-  465 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCE-EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS-
T ss_pred             CCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCe-EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC-
Confidence            3577899988765777788888999999986 331 12222233456889999995566555543333  566666653 


Q ss_pred             CCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          273 TSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       273 ~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                            .....+ ...-...+.|++.+.+..|+.+-+..+.|...|+..
T Consensus       466 ------~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG  508 (628)
T 4a0p_A          466 ------TEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG  508 (628)
T ss_dssp             ------CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ------CCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence                  333333 222346799999998877876666678999999864

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.54  E-value=2.2  Score=42.45  Aligned_cols=139  Identities=6%  Similarity=-0.014  Sum_probs=82.5

Q ss_pred             cccCCCCCCCCCCCCcCceeeEe---ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec---ccCcce
Q 046899          169 SKSGGNGDKPLESPSIGARGKYL---GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK---AHNADI  242 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v  242 (407)
                      .++.++.+..++..+++.. .+.   .....|.++...+++ . |..|+. +-|..+|..+++........   .....|
T Consensus       422 igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i  497 (781)
T 3v9f_A          422 FGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFV  497 (781)
T ss_dssp             EEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCE
T ss_pred             EEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCeEEecccCccccccccee
Confidence            3444445556665544322 221   134579999998887 5 444555 56889998876521111111   113578


Q ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC----CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899          243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~  318 (407)
                      .++..++ ++++.+ |+.++-+..||.+.       .....+..    ....|.++...++|. |. .|+.+|.|..||.
T Consensus       498 ~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~-------~~~~~~~~~~~l~~~~i~~i~~d~~g~-lW-i~T~~Glv~~~d~  566 (781)
T 3v9f_A          498 RSIAQDS-EGRFWI-GTFGGGVGIYTPDM-------QLVRKFNQYEGFCSNTINQIYRSSKGQ-MW-LATGEGLVCFPSA  566 (781)
T ss_dssp             EEEEECT-TCCEEE-EESSSCEEEECTTC-------CEEEEECTTTTCSCSCEEEEEECTTSC-EE-EEETTEEEEESCT
T ss_pred             EEEEEcC-CCCEEE-EEcCCCEEEEeCCC-------CeEEEccCCCCCCCCeeEEEEECCCCC-EE-EEECCCceEEECC
Confidence            9999888 666544 45433477788765       23333321    245799999999988 44 3444665588998


Q ss_pred             CCCC
Q 046899          319 EKIG  322 (407)
Q Consensus       319 ~~~~  322 (407)
                      .+.+
T Consensus       567 ~~~~  570 (781)
T 3v9f_A          567 RNFD  570 (781)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            7643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.52  E-value=0.49  Score=42.80  Aligned_cols=114  Identities=18%  Similarity=0.261  Sum_probs=76.8

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc----------eeeecc------cCcceEEEEecCCC--CCEEEE
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA----------VKVEKA------HNADIHCVDWNPHD--VNLILT  257 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~------~~~~v~~l~~~~~~--~~~l~t  257 (407)
                      .|..+..+|+| .+||..+ +..|.+-.+..+....          .+.+.-      ...+|..+.|+|-.  +..|++
T Consensus        67 ~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            57789999999 7777775 5689998887332100          111111      24679999999943  448899


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCCceeeec---------CCCCCEEEEEEcCCCCCEEE-EeeCCCeEEEE
Q 046899          258 GSADNSIHMFDRRKLTSDGVGSPIHKFE---------GHSAAVLCVQWSPDKSSVFG-SSAEDGILNIW  316 (407)
Q Consensus       258 g~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~h~~~v~~v~~~~~~~~ll~-s~~~d~~i~vw  316 (407)
                      -..|+.|++||+....    .+|. .+.         .....|.+++|.+++-.|.+ +....|.|.-.
T Consensus       145 LtsD~~Ir~yDl~~s~----~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQ----EKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EETTSCEEEEETTCTT----SCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EecCCEEEEEEcccCC----CCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999998732    2333 332         23367899999998766653 23467777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.30  E-value=1.4  Score=38.63  Aligned_cols=118  Identities=12%  Similarity=0.175  Sum_probs=64.2

Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEE-EEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLI-LWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK  271 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  271 (407)
                      ....+..+.+.|++ .+++.+. +|.+. -.|-. +.. -..........+..+.+.+ ++.+++ ++.+|.+++.+...
T Consensus       161 ~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~g-G~t-W~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~G~~~~s~~D~  234 (327)
T 2xbg_A          161 AIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPG-QTA-WEPHNRTTSRRLHNMGFTP-DGRLWM-IVNGGKIAFSDPDN  234 (327)
T ss_dssp             CCCCEEEEEECTTS-CEEEEET-TSSEEEEECTT-CSS-CEEEECCSSSCEEEEEECT-TSCEEE-EETTTEEEEEETTE
T ss_pred             CCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCC-CCc-eeECCCCCCCccceeEECC-CCCEEE-EeCCceEEEecCCC
Confidence            34578899999987 6666654 45443 33421 120 1112234456788899988 666554 45678887764221


Q ss_pred             CCCCCCCCceeee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899          272 LTSDGVGSPIHKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG  322 (407)
Q Consensus       272 ~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~  322 (407)
                      -.   ....+..- ..+...+.++++.+++. +++.+ .++.| ++....++
T Consensus       235 G~---tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~g~i-~~S~DgG~  280 (327)
T 2xbg_A          235 SE---NWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG-GAGAL-LCSQDGGQ  280 (327)
T ss_dssp             EE---EECCCBCTTSSCCSCEEEEEESSSSC-EEEEE-STTCE-EEESSTTS
T ss_pred             CC---eeEeccCCcccCCcceEEEEecCCCE-EEEEe-CCCeE-EEeCCCCc
Confidence            00   01221111 01234589999998776 55444 46766 44444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.23  E-value=1.3  Score=39.32  Aligned_cols=113  Identities=12%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             cCEEEEEECCCCCcEEEEEeC-----------------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEE
Q 046899          195 DTVEDVQFCPSSAQEFCSVGD-----------------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILT  257 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~t  257 (407)
                      ...+.+.+.++| .++++...                 .|.|.-+|.  ++  .. .....-...+.++|+| +++.|+.
T Consensus       165 ~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--~~-~~~~~l~~pNGia~sp-Dg~~lYv  237 (355)
T 3sre_A          165 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--VR-VVAEGFDFANGINISP-DGKYVYI  237 (355)
T ss_dssp             SSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--CE-EEEEEESSEEEEEECT-TSSEEEE
T ss_pred             CCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce--EE-EeecCCcccCcceECC-CCCEEEE
Confidence            367899999998 66665431                 244554544  33  22 2222334568999999 8876665


Q ss_pred             Ee-CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC-CCCCEEEEeeCC-CeEEEEeCC
Q 046899          258 GS-ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP-DKSSVFGSSAED-GILNIWDHE  319 (407)
Q Consensus       258 g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ll~s~~~d-~~i~vwd~~  319 (407)
                      +. ..+.|..|++.....   ......+. .....-.++..+ +|. +.+++..+ +.|..||..
T Consensus       238 adt~~~~I~~~~~~~~g~---l~~~~~~~-~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWT---LTPLRVLS-FDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEGGGTEEEEEEECTTSC---EEEEEEEE-CSSEEEEEEECTTTCC-EEEEEESCHHHHHSCCTT
T ss_pred             EeCCCCeEEEEEECCCCc---EecCEEEe-CCCCCceEEEeCCCCc-EEEEecCCceEEEEECCC
Confidence            54 568999999874210   11223342 245678889998 587 54445433 344444443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.22  E-value=1  Score=40.70  Aligned_cols=101  Identities=15%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             CCcEEEEEcCCCCCCceeeeccc----CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCC------Cceeeec
Q 046899          216 DSCLILWDARSGSTPAVKVEKAH----NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVG------SPIHKFE  285 (407)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~------~~~~~~~  285 (407)
                      ++.||.-++....  ..+.+..-    -..+..+..+| +|++||..+ +..|.|..+.........      -..+.+.
T Consensus        40 ~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~  115 (452)
T 3pbp_A           40 DNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYS  115 (452)
T ss_dssp             TTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEE
T ss_pred             CCEEEEEECCCCC--cceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEE
Confidence            5889998887544  24333322    23678899999 999999886 457888887632111000      1112222


Q ss_pred             C------CCCCEEEEEEcCCCCC--EEEEeeCCCeEEEEeCCC
Q 046899          286 G------HSAAVLCVQWSPDKSS--VFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       286 ~------h~~~v~~v~~~~~~~~--ll~s~~~d~~i~vwd~~~  320 (407)
                      -      ...+|..+.|||-+..  -|++-..|++||+||+..
T Consensus       116 l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          116 IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            1      2578999999996532  346888899999999996

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.02  E-value=2.1  Score=45.05  Aligned_cols=198  Identities=11%  Similarity=0.154  Sum_probs=114.9

Q ss_pred             CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc----CcceEEEEe
Q 046899          172 GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH----NADIHCVDW  247 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~  247 (407)
                      ....+.|+|+.+.+.+..+.- ...|.-=+|-...  .|+-.+ +..|.-|++..... +.+.+.-|    ...|..-..
T Consensus        84 ag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~-P~k~fdR~~~L~~~QIinY~~  158 (1630)
T 1xi4_A           84 AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQ-PVKMFDRHSSLAGCQIINYRT  158 (1630)
T ss_pred             cCCeEEEeehHHhhhhccccc-CCCceEEEecCCC--eeEEEc-CCeEEEeccCCCCc-cHHHHhcchhcccCeeEEeee
Confidence            366777888877766666543 3467677786654  344443 46899999975433 34444444    456767777


Q ss_pred             cCCCCCEEEEEe-------CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc--CCCCCEEEEeeC---CCeEEE
Q 046899          248 NPHDVNLILTGS-------ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS--PDKSSVFGSSAE---DGILNI  315 (407)
Q Consensus       248 ~~~~~~~l~tg~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~ll~s~~~---d~~i~v  315 (407)
                      ++ +.++++..|       -.|.+.+|..+.       +..+.+.||.+.-..+...  +....||+-+..   .+.++|
T Consensus       159 d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er-------~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi  230 (1630)
T 1xi4_A          159 DA-KQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (1630)
T ss_pred             CC-CCCeEEEEeeccCCCcccceeeeeeccc-------ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence            77 777766433       358899999885       5566677776554444432  222235443322   268999


Q ss_pred             EeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          316 WDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       316 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      -++.....  .-+........+.|.|+.   ...-..++.+.. .-+.|...+.-|.|+++|+.      ++.++..-+
T Consensus       231 ~Ei~~~~~--~~~~f~kk~~~~~~~~~~---~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~------t~~~i~~~r  297 (1630)
T 1xi4_A          231 IEVGTPPT--GNQPFPKKAVDVFFPPEA---QNDFPVAMQISE-KHDVVFLITKYGYIHLYDLE------TGTCIYMNR  297 (1630)
T ss_pred             EecCCCcc--CCCCCccccccccCCccc---ccCcceEEEecc-ccCEEEEEecCceEEEEecc------cchhhhhcc
Confidence            99865301  012222223455565541   111111222222 23456677888899999999      777776544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.54  E-value=1.1  Score=39.78  Aligned_cols=108  Identities=7%  Similarity=0.078  Sum_probs=60.6

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee---cccCcceEEEEecCCC----CCEEEEEeCC-----
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE---KAHNADIHCVDWNPHD----VNLILTGSAD-----  261 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~----~~~l~tg~~d-----  261 (407)
                      -..-..|+|.|+| .++++ ..+|.|.+++  .+....+...   .........|+++| +    +.+.++-...     
T Consensus        30 l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCc
Confidence            3456799999999 65554 5669999998  3331111111   11234678999999 5    4444443322     


Q ss_pred             CcEEEEeCCCCCCCCCCCc-eeeec---CCCCCEEEEEEcCCCCCEEEEee
Q 046899          262 NSIHMFDRRKLTSDGVGSP-IHKFE---GHSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       262 g~i~vwd~~~~~~~~~~~~-~~~~~---~h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                      +.|..|+.....- ...+. +..+.   ........++|.|+|. |+++.+
T Consensus       105 ~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  153 (352)
T 2ism_A          105 NQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG  153 (352)
T ss_dssp             EEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred             cEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence            5788887763100 00111 22233   1112346899999996 665643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.28  E-value=2.3  Score=36.41  Aligned_cols=104  Identities=13%  Similarity=0.171  Sum_probs=55.2

Q ss_pred             cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCC
Q 046899          208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGV  277 (407)
Q Consensus       208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~  277 (407)
                      .+++.|+.+     ..+.+||+.+.+......+........++.+   ++.+++.|+.+     ..+.+||+.+..    
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~----  233 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS----  233 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc----
Confidence            677777654     4588999887663212111111111122222   56778888764     468999998632    


Q ss_pred             CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899          278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI  321 (407)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  321 (407)
                      +..+..+.........+.+  ++. |++.|+.+     ..+.+||+++.
T Consensus       234 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          234 WTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCC
Confidence            3333322221112222222  444 66677765     45778887763

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.04  E-value=0.17  Score=41.34  Aligned_cols=104  Identities=6%  Similarity=0.069  Sum_probs=61.1

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc--------eEEEEecCCCCCEEEEEeCCCcEEEE
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD--------IHCVDWNPHDVNLILTGSADNSIHMF  267 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------v~~l~~~~~~~~~l~tg~~dg~i~vw  267 (407)
                      .+..++|+|++ .+.+.  .+|.+.-.+..+...   ....+....        ..++.|+| ++.+.++  .||.|+-+
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~---~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN---DNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT---CCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEE
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc---ccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEe
Confidence            56699999988 55555  667766666544321   111111222        36889999 8887777  56988877


Q ss_pred             eCCCCCCCCCCCce---eee-cCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          268 DRRKLTSDGVGSPI---HKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       268 d~~~~~~~~~~~~~---~~~-~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      +.-+...   ..-+   ..+ ..-=..+..|.|.|+|. |.|. . |+.+.
T Consensus       113 ~pP~~~~---~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav-~-dg~ly  157 (236)
T 1tl2_A          113 SPPQSDT---DNWIARATEVGSGGWSGFKFLFFHPNGY-LYAV-H-GQQFY  157 (236)
T ss_dssp             SCCCSTT---CCHHHHSEEEECSSGGGEEEEEECTTSC-EEEE-E-TTEEE
T ss_pred             CCCcCCC---CceeccccEeccCCCCceEEEEECCCce-EEEE-e-CCcEE
Confidence            6533110   1110   111 11114679999999998 6544 4 77754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.97  E-value=1.5  Score=38.89  Aligned_cols=115  Identities=7%  Similarity=0.014  Sum_probs=69.8

Q ss_pred             CEEEEEECC--CCC-cEEEEEeC--CCcEEEEEcCCCCC--Cceeeeccc-CcceEEEEecCCCCCEEEEEe--------
Q 046899          196 TVEDVQFCP--SSA-QEFCSVGD--DSCLILWDARSGST--PAVKVEKAH-NADIHCVDWNPHDVNLILTGS--------  259 (407)
Q Consensus       196 ~v~~l~~~~--~~~-~~l~s~~~--dg~i~iwd~~~~~~--~~~~~~~~~-~~~v~~l~~~~~~~~~l~tg~--------  259 (407)
                      ....|.+.+  ++. .++++-..  +.+|.+|++.....  .....+.+. -...+.+.+.+ ++.+.++..        
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence            455666644  342 24444333  56788888876432  122222221 23578899999 788777654        


Q ss_pred             ---------CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          260 ---------ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       260 ---------~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                               ..|.|..+|...      .+   .+...-..-+.++|+||++.++++-+..+.|..|++..
T Consensus       192 ~~~e~~~~~~~g~vyr~d~~~------~~---~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSPND------VR---VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECTTC------CE---EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccchhhccCCccEEEEEECCe------EE---EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                     124555555422      11   22212235689999999998988888889999999874

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.89  E-value=2.2  Score=36.56  Aligned_cols=104  Identities=11%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             cEEEEEeCC-------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCC
Q 046899          208 QEFCSVGDD-------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSD  275 (407)
Q Consensus       208 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~  275 (407)
                      .+++.|+.+       ..+.+||+.+.+......+........++.+   ++.+++.|+.+     ..+.+||+.+..  
T Consensus       157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~--  231 (302)
T 2xn4_A          157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA--  231 (302)
T ss_dssp             EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE--
T ss_pred             EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC--
Confidence            566666542       3588999887653222111111111122222   56788888764     368899987622  


Q ss_pred             CCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-----eEEEEeCCCC
Q 046899          276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----ILNIWDHEKI  321 (407)
Q Consensus       276 ~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-----~i~vwd~~~~  321 (407)
                        +..+..+......-..+.+  ++. |++.|+.++     .+.+||+.+.
T Consensus       232 --W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          232 --WRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             --EeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCC
Confidence              3333222211111122222  444 667777653     4888998864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.12  E-value=6.8  Score=35.65  Aligned_cols=142  Identities=11%  Similarity=0.083  Sum_probs=91.7

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECCC--CCcEEEEEeCC---CcEEEEEcCCC---CCCcee-e----e--ccc
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCPS--SAQEFCSVGDD---SCLILWDARSG---STPAVK-V----E--KAH  238 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~~~d---g~i~iwd~~~~---~~~~~~-~----~--~~~  238 (407)
                      |.+.++..+.. ..+.+.+|-.....+.....  ...+|+-+...   +++++-++...   ..+..+ .    +  ...
T Consensus       179 G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~  257 (494)
T 1bpo_A          179 GAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  257 (494)
T ss_dssp             EEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred             ceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence            44455554432 34566677666555554321  12355555543   78999999654   111111 0    0  122


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~  318 (407)
                      .+-..++..++ ....+..-+.-|.|.+||+.+      +.++..-+-...+|..-+-+.....++ .-...|.|.--.+
T Consensus       258 ~DFPvamqvs~-kygviyviTK~G~i~lyDleT------gt~i~~nrIs~~~iF~t~~~~~~~Gi~-~Vnr~GqVl~v~v  329 (494)
T 1bpo_A          258 NDFPVAMQISE-KHDVVFLITKYGYIHLYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCV  329 (494)
T ss_dssp             TCCEEEEEEET-TTTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEEETTTTEEE-EEETTCEEEEEEE
T ss_pred             cCceeEEEecc-cCCEEEEEecCceEEEEeccc------ceeeeeecccCCceEEecccCCCCcEE-EEccCceEEEEEE
Confidence            34456788888 778888889999999999999      899988877777887777766655565 5568888888777


Q ss_pred             CCCCcc
Q 046899          319 EKIGEK  324 (407)
Q Consensus       319 ~~~~~~  324 (407)
                      .....+
T Consensus       330 ~e~~iv  335 (494)
T 1bpo_A          330 EEENII  335 (494)
T ss_dssp             CTTTHH
T ss_pred             ccccch
Confidence            764433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.98  E-value=4.2  Score=34.83  Aligned_cols=104  Identities=10%  Similarity=0.085  Sum_probs=54.8

Q ss_pred             cEEEEEeC---------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCC
Q 046899          208 QEFCSVGD---------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLT  273 (407)
Q Consensus       208 ~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~  273 (407)
                      .+++.|+.         -..+.+||+.+.+......+.........+.+   ++.+++.|+.+     ..+.+||+.+..
T Consensus       151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            56666653         34588999987763222111111111122222   45677777754     358899988632


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI  321 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  321 (407)
                          +..+..+.........+.+  ++. |++.|+.+     ..+.+||+.+.
T Consensus       228 ----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          228 ----WKMVSPMPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ----EEECCCCSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTTT
T ss_pred             ----EEECCCCCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCCC
Confidence                3333223222222233333  444 66778744     56888888774

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.95  E-value=3.7  Score=36.19  Aligned_cols=119  Identities=13%  Similarity=0.124  Sum_probs=66.1

Q ss_pred             eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee----cccCcceEEEEecCC---CCCEEEEE--
Q 046899          188 GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE----KAHNADIHCVDWNPH---DVNLILTG--  258 (407)
Q Consensus       188 ~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~~~~---~~~~l~tg--  258 (407)
                      ..+...-..-..|+|.|+| .+|++--..|.|++++...+....+..+    .........|+++|+   ++.+.++-  
T Consensus        25 ~~va~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             EEeecCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3344445567899999999 6676665589999998765542112111    122456789999992   24333332  


Q ss_pred             eCCCcEEEEeCCCCC----CCCCCCce-eeecC-CCCCEEEEEEcCCCCCEEEEee
Q 046899          259 SADNSIHMFDRRKLT----SDGVGSPI-HKFEG-HSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       259 ~~dg~i~vwd~~~~~----~~~~~~~~-~~~~~-h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                      ..++.|.-|......    .....+.+ ..+.. ....-..|+|.|+|. |+++.+
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G  158 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG  158 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence            234566666654311    00001112 22321 122346799999997 655654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.88  E-value=4.4  Score=37.28  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc------cCcceEEEEecCCC---CCEEEEEeC----
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA------HNADIHCVDWNPHD---VNLILTGSA----  260 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~~~~~---~~~l~tg~~----  260 (407)
                      -.....|+|.|+| .++++-...+.|++++..++....+..+..      .......|+|+| +   ...|.....    
T Consensus        26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEecccc
Confidence            4466799999999 666665444578888765554211222211      235677999999 4   444444332    


Q ss_pred             ---------CCcEEEEeCCCCCC-CCCCCcee-eecC-CCCCEEEEEEcCCCCCEEEEee
Q 046899          261 ---------DNSIHMFDRRKLTS-DGVGSPIH-KFEG-HSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       261 ---------dg~i~vwd~~~~~~-~~~~~~~~-~~~~-h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                               ...|.-|+...... ....+.+. .+.. .......|+|.|+|. |+++.+
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G  162 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG  162 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence                     23455565432100 00011122 2222 123578999999998 555544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.70  E-value=4.9  Score=34.48  Aligned_cols=104  Identities=11%  Similarity=0.075  Sum_probs=54.6

Q ss_pred             cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCC
Q 046899          208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGV  277 (407)
Q Consensus       208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~  277 (407)
                      .+++.|+.+     ..+.+||+.+.+......+........++.+   ++.+++.|+.+     ..+.+||+.+..    
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~----  242 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET----  242 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc----
Confidence            677777654     4588999887652211111111111222333   56777888765     468999988632    


Q ss_pred             CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899          278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI  321 (407)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  321 (407)
                      +..+..+.........+.+  ++. |++.|+.+     ..+.+||+.+.
T Consensus       243 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          243 WTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCCC
Confidence            3333222221111122222  444 66677743     45778888764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.59  E-value=1.9  Score=36.92  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=56.1

Q ss_pred             cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCC
Q 046899          208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGV  277 (407)
Q Consensus       208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~  277 (407)
                      .+++.|+.+     ..+.+||+.+.+...............++.+   ++.+++.|+.+     ..+.+||+.+..    
T Consensus       114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~----  186 (301)
T 2vpj_A          114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGH----  186 (301)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence            677777643     3588999887663222222111111122222   56777887765     458899987632    


Q ss_pred             CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCCC
Q 046899          278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKIG  322 (407)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~~  322 (407)
                      +..+..+.........+.+  ++. |++.|+.+     ..+.+||+.+.+
T Consensus       187 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          187 WTNVTPMATKRSGAGVALL--NDH-IYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEeCCCCCcccccceEEEE--CCE-EEEEeCCCCCcccceEEEEeCCCCc
Confidence            3333222221111222222  344 66778764     468899988743

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.96  E-value=1.4  Score=37.76  Aligned_cols=104  Identities=10%  Similarity=0.091  Sum_probs=54.2

Q ss_pred             cEEEEEeCCC-----cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-------CcEEEEeCCCCCCC
Q 046899          208 QEFCSVGDDS-----CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-------NSIHMFDRRKLTSD  275 (407)
Q Consensus       208 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-------g~i~vwd~~~~~~~  275 (407)
                      .+++.|+.++     .+.+||+.+.+......+........++.+   ++.+++.|+.+       ..+.+||+.+..  
T Consensus       110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--  184 (302)
T 2xn4_A          110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE--  184 (302)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred             EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence            6777777553     578889887653212111111111122222   55777777653       358899987632  


Q ss_pred             CCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899          276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI  321 (407)
Q Consensus       276 ~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  321 (407)
                        +..+..+.........+.+  ++. |++.|+.+     ..+.+||+.+.
T Consensus       185 --W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          185 --WTYIAEMSTRRSGAGVGVL--NNL-LYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBSSSSBCCCEEEEETTTT
T ss_pred             --EEECCCCccccccccEEEE--CCE-EEEECCCCCCcccceEEEEeCCCC
Confidence              3333222221112222222  444 66777764     46889998864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.48  E-value=17  Score=38.59  Aligned_cols=206  Identities=12%  Similarity=0.068  Sum_probs=106.5

Q ss_pred             eCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcccccc
Q 046899           92 LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKS  171 (407)
Q Consensus        92 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (407)
                      +| ..++||-=. ..++.|+|+.+...+....-        ...|.+|.--+...                     +.--
T Consensus        74 nP-~~~iiALra-g~~lQiFnl~~k~klks~~~--------~e~VvfWkWis~~~---------------------l~lV  122 (1630)
T 1xi4_A           74 NP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM--------TDDVTFWKWISLNT---------------------VALV  122 (1630)
T ss_pred             CC-CcceEEEec-CCeEEEeehHHhhhhccccc--------CCCceEEEecCCCe---------------------eEEE
Confidence            66 556666654 57999999988765554332        12344554332211                     0001


Q ss_pred             CCCCCCCCCCCC-cCceeeEeec----ccCEEEEEECCCCCcEEE-EEe------CCCcEEEEEcCCCCCCceeeecccC
Q 046899          172 GGNGDKPLESPS-IGARGKYLGH----EDTVEDVQFCPSSAQEFC-SVG------DDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       172 ~~~~i~i~d~~~-~~~~~~~~~~----~~~v~~l~~~~~~~~~l~-s~~------~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                      .+..+.-|++.. ..++..+.-|    ...|-.-..+++. ++++ +|-      -.|.+.+|..+.+.   .+.+.+|.
T Consensus       123 T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~---sQ~iegha  198 (1630)
T 1xi4_A          123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHA  198 (1630)
T ss_pred             cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeeccccc---chhhhHhH
Confidence            112223333321 1222222222    2455566667776 4443 332      35889999987655   44556776


Q ss_pred             cceEEEEec--CCCCCEEEEEeC---CCcEEEEeCCCC-CCCCCC--CceeeecC---CCCCEEEEEEcCCCCCEEEEee
Q 046899          240 ADIHCVDWN--PHDVNLILTGSA---DNSIHMFDRRKL-TSDGVG--SPIHKFEG---HSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       240 ~~v~~l~~~--~~~~~~l~tg~~---dg~i~vwd~~~~-~~~~~~--~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                      +....+...  +....+++.+..   .+.++|-++..+ ...+..  +.+..+..   ..+-..++..++....+ ..-+
T Consensus       199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~i-y~it  277 (1630)
T 1xi4_A          199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-FLIT  277 (1630)
T ss_pred             hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEE-EEEe
Confidence            554444432  212233333222   268999998664 111000  11111111   13334577778776644 4667


Q ss_pred             CCCeEEEEeCCCCCcccccccCCCc
Q 046899          309 EDGILNIWDHEKIGEKQDYGELKYP  333 (407)
Q Consensus       309 ~d~~i~vwd~~~~~~~~~~~~~~~~  333 (407)
                      .-|.|.++|+.++..+-.-.-...+
T Consensus       278 k~G~~~~~d~~t~~~i~~~ris~~~  302 (1630)
T 1xi4_A          278 KYGYIHLYDLETGTCIYMNRISGET  302 (1630)
T ss_pred             cCceEEEEecccchhhhhccccCCc
Confidence            7899999999998877554433333

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.30  E-value=13  Score=34.12  Aligned_cols=31  Identities=16%  Similarity=0.124  Sum_probs=22.3

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      -...+.|+|.| +++++++-...+.|++++..
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~   56 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPE   56 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTT
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECC
Confidence            45678999999 88877776544567777654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=89.13  E-value=13  Score=33.87  Aligned_cols=129  Identities=9%  Similarity=0.020  Sum_probs=78.0

Q ss_pred             cCEEEEEECCCCCcEEEEEe-------CCCcEEEEEcCCCCCCceeeecccCcceEEEEecC--CCCCEEEEEeC---CC
Q 046899          195 DTVEDVQFCPSSAQEFCSVG-------DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP--HDVNLILTGSA---DN  262 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~l~tg~~---dg  262 (407)
                      ..|-.-..+++. ++++..|       -.|.+.+|..+.+.   .+.+.+|......+...-  ....+|+.+..   .+
T Consensus       151 ~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~  226 (494)
T 1bpo_A          151 CQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (494)
T ss_dssp             CEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred             ceEEEEEECCCC-CeEEEEeecccCCcccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence            356666677777 4444332       24788999988665   667778877665555532  11234444433   27


Q ss_pred             cEEEEeCCCCCCC-CCC-Cceeee-c---CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          263 SIHMFDRRKLTSD-GVG-SPIHKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       263 ~i~vwd~~~~~~~-~~~-~~~~~~-~---~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                      .++|-++..+... ... +....+ .   ...+-..++..++....+ ..-..-|.|.+||++++.++-.-.
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi-yviTK~G~i~lyDleTgt~i~~nr  297 (494)
T 1bpo_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-FLITKYGYIHLYDLETGTCIYMNR  297 (494)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE-EEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE-EEEecCceEEEEecccceeeeeec
Confidence            8999998664111 000 111111 1   123456688888877744 477789999999999988775544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.89  E-value=4.3  Score=35.93  Aligned_cols=110  Identities=14%  Similarity=0.065  Sum_probs=60.0

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee---cccCcceEEEEecCC---CCCEEEEEeC---C---
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE---KAHNADIHCVDWNPH---DVNLILTGSA---D---  261 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~~~~---~~~~l~tg~~---d---  261 (407)
                      -.....|+|.|++ .+++ +..+|.|+++|. .+. ..+..+   .........|+++|.   ++.+.++-..   +   
T Consensus        28 l~~P~~ia~~pdG-~l~V-~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           28 LEVPWSIAPLGGG-RYLV-TERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             CSCEEEEEEEETT-EEEE-EETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCCeEEEEcCCC-eEEE-EeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            3456899999998 6554 456699999873 333 122211   112345789999993   2444444332   3   


Q ss_pred             -CcEEEEeCCCCCCC-CCCCc-eeeecC-CCCCEEEEEEcCCCCCEEEEee
Q 046899          262 -NSIHMFDRRKLTSD-GVGSP-IHKFEG-HSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       262 -g~i~vwd~~~~~~~-~~~~~-~~~~~~-h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                       ..|..|+....... ...+. +..+.. .......++|.|+|. |+++.+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G  153 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTG  153 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEEC
Confidence             56777776541000 00011 122321 112346799999997 655543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.88  E-value=2.6  Score=39.61  Aligned_cols=129  Identities=8%  Similarity=-0.047  Sum_probs=77.8

Q ss_pred             CCCCCCCCC----cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC----------CceeeecccCc
Q 046899          175 GDKPLESPS----IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST----------PAVKVEKAHNA  240 (407)
Q Consensus       175 ~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~  240 (407)
                      .+.+.|...    +..+..+-.-......+..+|+|..++++|-.+.++.++|++....          ..+.....-..
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            366677655    3344444444445567899999966666666799999999984210          01111222344


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC----CCCCCCceeeecCCCCCEEEEE-----EcCCCCCEE
Q 046899          241 DIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT----SDGVGSPIHKFEGHSAAVLCVQ-----WSPDKSSVF  304 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~----~~~~~~~~~~~~~h~~~v~~v~-----~~~~~~~ll  304 (407)
                      .....+|++ +|+...|---|..|.-|++....    -+.....+..+.-|-.+-.-.+     -.|+|++|+
T Consensus       379 GPlHt~Fd~-~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv  450 (638)
T 3sbq_A          379 GPLHTTFDG-RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV  450 (638)
T ss_dssp             CEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred             cccEEEECC-CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence            567899999 88766777789999999986510    0000245556665654432222     246777664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=88.28  E-value=8.8  Score=33.82  Aligned_cols=112  Identities=12%  Similarity=0.035  Sum_probs=57.5

Q ss_pred             ccCEEEEEECCCCCc-EEEEEeCCCcEEEEEcCCCCCCceeee----cccCcceEEEEecCC---CCCEEEEEeC-----
Q 046899          194 EDTVEDVQFCPSSAQ-EFCSVGDDSCLILWDARSGSTPAVKVE----KAHNADIHCVDWNPH---DVNLILTGSA-----  260 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~~~~---~~~~l~tg~~-----  260 (407)
                      -.....|+|.|++ + +++ +...|.|++++........+...    .........|+++|.   ++.+.++-..     
T Consensus        17 l~~P~~i~~~pdG-~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           17 LDHPWALAFLPDN-HGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             ESSEEEEEECSTT-CCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCCcEEEEEcCCC-CEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            3456899999999 6 554 45679999998532110011111    112345689999993   2444444322     


Q ss_pred             --CCcEEEEeCCCCCCC-CCCCce-eeec---CCCCCEEEEEEcCCCCCEEEEee
Q 046899          261 --DNSIHMFDRRKLTSD-GVGSPI-HKFE---GHSAAVLCVQWSPDKSSVFGSSA  308 (407)
Q Consensus       261 --dg~i~vwd~~~~~~~-~~~~~~-~~~~---~h~~~v~~v~~~~~~~~ll~s~~  308 (407)
                        ...|..|+....... ...+.+ ..+.   ........|+|.|+|. |+++.+
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  148 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG  148 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence              235666666431000 000111 1121   1111236799999996 555544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=87.84  E-value=14  Score=32.60  Aligned_cols=28  Identities=11%  Similarity=0.063  Sum_probs=21.2

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      -.....|+|.| +++++++ ..+|.|++++
T Consensus        28 l~~P~~ia~~p-dG~l~V~-e~~g~I~~~d   55 (354)
T 3a9g_A           28 LEVPWSIAPLG-GGRYLVT-ERPGRLVLIS   55 (354)
T ss_dssp             CSCEEEEEEEE-TTEEEEE-ETTTEEEEEC
T ss_pred             CCCCeEEEEcC-CCeEEEE-eCCCEEEEEe
Confidence            45678999999 7886665 4558888886

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.58  E-value=3.8  Score=35.22  Aligned_cols=104  Identities=11%  Similarity=0.096  Sum_probs=54.5

Q ss_pred             cEEEEEeCC-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-----CcEEEEeCCCCCCCCC
Q 046899          208 QEFCSVGDD-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-----NSIHMFDRRKLTSDGV  277 (407)
Q Consensus       208 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----g~i~vwd~~~~~~~~~  277 (407)
                      .+++.|+.+     ..+.+||+.+.+......+........++.+   ++.+++.|+.+     ..+.+||+.+..    
T Consensus       123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~----  195 (308)
T 1zgk_A          123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE----  195 (308)
T ss_dssp             EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe----
Confidence            566666643     4688899887652111111111111122222   45777777765     458899987632    


Q ss_pred             CCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC-----CeEEEEeCCCC
Q 046899          278 GSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GILNIWDHEKI  321 (407)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  321 (407)
                      +..+..+......-..+.+  ++. |++.|+.+     ..+.+||+.+.
T Consensus       196 W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          196 WRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCC
Confidence            2222222221112222333  444 66778765     56889998874

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.88  E-value=11  Score=39.40  Aligned_cols=133  Identities=10%  Similarity=0.088  Sum_probs=76.6

Q ss_pred             CCCCCCCCCcCceeeEeec-ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC--
Q 046899          175 GDKPLESPSIGARGKYLGH-EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD--  251 (407)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~--  251 (407)
                      .+++.+......+..+... ...|...+.+.   .+++.++ ++.+.++.+..++.... ........|.|+++.|..  
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~-~~~~l~~evscl~i~~~~~~  567 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIHPQELRQI-SHTEMEHEVACLDITPLGDS  567 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEE-EEEECSSCEEEEECCCCSSS
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeee-cccCCCCceEEEEeecCCCC
Confidence            3444444433344444432 23566666554   2344444 67888888876541111 222346689999997622  


Q ss_pred             ---CCEEEEEeC-CCcEEEEeCCCCCCCCCCCceeeecC-CCCCEEEEEEc--CCCCCEEEEeeCCCeEEEEeCC
Q 046899          252 ---VNLILTGSA-DNSIHMFDRRKLTSDGVGSPIHKFEG-HSAAVLCVQWS--PDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       252 ---~~~l~tg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~--~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                         +.+++.|.. |++|+|+++..      .+.+....- -.....++.+.  ....+|+ .|-.||.+.-+.+.
T Consensus       568 ~~~s~~~aVg~~~d~tv~I~sL~~------l~~~~~~~L~~~~~p~si~l~~~~~~~~L~-igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          568 NGLSPLCAIGLWTDISARILKLPS------FELLHKEMLGGEIIPRSILMTTFESSHYLL-CALGDGALFYFGLN  635 (1158)
T ss_dssp             TTCCSEEEEEETTTTEEEEEETTT------CCEEEEEECCSSCCEEEEEEEEETTEEEEE-EEETTSEEEEEEEC
T ss_pred             cccccEEEEEECCCCEEEEEECCC------CCeEEEEECCCCCCCcEEEEEEeCCCcEEE-EEeCCCeEEEEEEc
Confidence               479999997 99999999986      455543221 12344455443  2334554 77789987655543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=86.53  E-value=9.5  Score=32.75  Aligned_cols=104  Identities=8%  Similarity=0.052  Sum_probs=54.2

Q ss_pred             cEEEEEeCC--------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-C-----CcEEEEeCCCCC
Q 046899          208 QEFCSVGDD--------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-D-----NSIHMFDRRKLT  273 (407)
Q Consensus       208 ~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-d-----g~i~vwd~~~~~  273 (407)
                      .+++.|+.+        ..+.+||..+.+......+........++.+   ++.+++.|+. +     ..+.+||+.+..
T Consensus       100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            566666632        4588999987652111111111111122222   5677788876 2     468899988632


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC-----eEEEEeCCCC
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----ILNIWDHEKI  321 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~-----~i~vwd~~~~  321 (407)
                          +..+..+......-..+.+  ++. |++.|+.++     .+.+||+.+.
T Consensus       177 ----W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          177 ----WKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             ----EEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTT
T ss_pred             ----EEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCC
Confidence                2333222221111122222  444 667777654     5888998874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=84.94  E-value=8.9  Score=33.79  Aligned_cols=73  Identities=12%  Similarity=0.184  Sum_probs=48.1

Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec---CCCCCEEEEEEcCC---CCCEEEEeeCC---
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE---GHSAAVLCVQWSPD---KSSVFGSSAED---  310 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~~~---~~~ll~s~~~d---  310 (407)
                      .....++|.| +++++++ ..+|.|++++ .. .    .+.+..+.   ........|+|+|+   +.+|+++-...   
T Consensus        31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~-~g-~----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~  102 (352)
T 2ism_A           31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR-EG-R----LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG  102 (352)
T ss_dssp             SCEEEEEECT-TSCEEEE-ETTTEEEEEE-TT-E----EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred             CCceEEEEcC-CCeEEEE-eCCCeEEEEE-CC-C----ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence            3467899999 8885555 5679999998 21 0    22222222   12456899999998   56677665543   


Q ss_pred             --CeEEEEeCCC
Q 046899          311 --GILNIWDHEK  320 (407)
Q Consensus       311 --~~i~vwd~~~  320 (407)
                        +.|..+++..
T Consensus       103 ~~~~v~r~~~~~  114 (352)
T 2ism_A          103 LRNQVVRLRHLG  114 (352)
T ss_dssp             SEEEEEEEEECS
T ss_pred             CccEEEEEEeCC
Confidence              6788888764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=84.49  E-value=21  Score=31.43  Aligned_cols=33  Identities=12%  Similarity=0.199  Sum_probs=25.6

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEA  115 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~  115 (407)
                      --...+.|+|.| +++++++--..|.|++++...
T Consensus        30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~   62 (347)
T 3das_A           30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKT   62 (347)
T ss_dssp             CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTT
T ss_pred             CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCC
Confidence            356788999999 888887776578898887543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=82.36  E-value=4.3  Score=35.01  Aligned_cols=104  Identities=9%  Similarity=0.119  Sum_probs=54.3

Q ss_pred             cEEEEEeC-C-----CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC-----cEEEEeCCCCCCCC
Q 046899          208 QEFCSVGD-D-----SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN-----SIHMFDRRKLTSDG  276 (407)
Q Consensus       208 ~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg-----~i~vwd~~~~~~~~  276 (407)
                      .+++.|+. +     ..+.+||+.+.+......+........++.+   ++.+++.|+.++     .+.+||+.+..   
T Consensus       150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~---  223 (315)
T 4asc_A          150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK---  223 (315)
T ss_dssp             EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE---
T ss_pred             EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe---
Confidence            57777765 2     4689999887652211111111111122222   567788887654     58889987632   


Q ss_pred             CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC--------------CeEEEEeCCCC
Q 046899          277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED--------------GILNIWDHEKI  321 (407)
Q Consensus       277 ~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d--------------~~i~vwd~~~~  321 (407)
                       +..+..+.........+.+  ++. |++.|+.+              ..+.+||+.+.
T Consensus       224 -W~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          224 -WAPFEAFPQERSSLSLVSL--VGT-LYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             -EEEECCCSSCCBSCEEEEE--TTE-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             -EEECCCCCCcccceeEEEE--CCE-EEEECCccccCcCCccccccccCcEEEecCCCC
Confidence             3333332221112222333  444 66677754              24678888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=80.25  E-value=28  Score=30.04  Aligned_cols=107  Identities=8%  Similarity=0.120  Sum_probs=63.1

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC--CC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARS-GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR--RK  271 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~--~~  271 (407)
                      ..+..|.+.+++ .+++++ .+|.|.  -... +. .-..........+..+.+.| ++.+++.+...+..+-.|-  .+
T Consensus       122 ~~~~~i~~~~~~-~~~~~~-~~g~v~--~S~DgG~-tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~t  195 (327)
T 2xbg_A          122 GSPRLIKALGNG-SAEMIT-NVGAIY--RTKDSGK-NWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTA  195 (327)
T ss_dssp             SCEEEEEEEETT-EEEEEE-TTCCEE--EESSTTS-SEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSS
T ss_pred             CCeEEEEEECCC-CEEEEe-CCccEE--EEcCCCC-CCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCc
Confidence            346677776666 556555 455442  2222 32 12223334456788999999 7787777654444444443  22


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                            .+.+.  ......+..+++.+++. ++ ..+.+|.+.+.+
T Consensus       196 ------W~~~~--~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~  231 (327)
T 2xbg_A          196 ------WEPHN--RTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD  231 (327)
T ss_dssp             ------CEEEE--CCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred             ------eeECC--CCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence                  34432  23456789999999987 54 455678887774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	407
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 1e-16
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 9/129 (6%)

Query: 189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN 248
            + GHE  +  + F P+    F +  DD+   L+D R+               I  V ++
Sbjct: 221 TFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279

Query: 249 PHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA 308
                L+L G  D + +++D  K              GH   V C+  + D  +V  + +
Sbjct: 280 KSG-RLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNRVSCLGVTDDGMAVA-TGS 331

Query: 309 EDGILNIWD 317
            D  L IW+
Sbjct: 332 WDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 210 FCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269
           F S   D+   LWD R G     +    H +DI+ + + P + N   TGS D +  +FD 
Sbjct: 199 FVSGACDASAKLWDVREGMC--RQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255

Query: 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329
           R           +  +     +  V +S     +  +  +D   N+WD  K         
Sbjct: 256 RADQEL----MTYSHDNIICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAG 310

Query: 330 LKYPIIHPAYSSD 342
               +     + D
Sbjct: 311 HDNRVSCLGVTDD 323

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV 303
                  D  L ++G+ D S  ++D R+      G     F GH + +  + + P+  + 
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVRE------GMCRQTFTGHESDINAICFFPN-GNA 240

Query: 304 FGSSAEDGILNIWDH 318
           F + ++D    ++D 
Sbjct: 241 FATGSDDATCRLFDL 255

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 1e-14
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 23/145 (15%)

Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA----------VKVEKAHNAD 241
           GH+D+V  V F     Q   S   D  + LW+ ++ +  +                H   
Sbjct: 252 GHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
           +  V    +D   IL+GS D  +  +D++       G+P+   +GH  +V+ V  +   S
Sbjct: 311 VLSVATTQND-EYILSGSKDRGVLFWDKKS------GNPLLMLQGHRNSVISVAVANGSS 363

Query: 302 -----SVFGSSAEDGILNIWDHEKI 321
                +VF + + D    IW ++KI
Sbjct: 364 LGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 39/296 (13%), Positives = 84/296 (28%), Gaps = 16/296 (5%)

Query: 67  EEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA 126
              R   V+  K++ H   V  ++       +      +  V      +   R +   AA
Sbjct: 46  ALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAA 105

Query: 127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGA 186
           +  P+   +    S   ++ ++   P                  +G              
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA------------TGAEDRLIRIWDIENR 153

Query: 187 RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVD 246
           +   +      +        + +    G     +        T    +  +    +  V 
Sbjct: 154 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI--WDLRTGQCSLTLSIEDGVTTVA 211

Query: 247 WNPHDVNLILTGSADNSIHMFDRRKLTSDG-VGSPIHKFEGHSAAVLCVQWSPDKSSVFG 305
            +P D   I  GS D ++ ++D         + S      GH  +V  V ++ D  SV  
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV- 270

Query: 306 SSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG 361
           S + D  + +W+ +    K D            Y      + +   T    +++ G
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 12/105 (11%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 233 KVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVL 292
           +   +       +D +   V   L    ++   +++        +   +HK   H++ V 
Sbjct: 9   RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYN--PALPREIDVELHKSLDHTSVVC 66

Query: 293 CVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHP 337
           CV++S D   +  ++  +    ++            +       P
Sbjct: 67  CVKFSNDGEYL--ATGCNKTTQVYRVSDGSLVARLSDDSAANKDP 109

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 3e-14
 Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 199 DVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG 258
           + +          S   D  + +WD  +G    +     H+  +  V ++      IL+ 
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGG-KFILSC 265

Query: 259 SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
           + D ++ ++D +          +     H   V  + +      V  + + D  + +W+
Sbjct: 266 ADDKTLRVWDYKN------KRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 3e-09
 Identities = 48/296 (16%), Positives = 90/296 (30%), Gaps = 46/296 (15%)

Query: 82  HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADS------------- 128
           H   V R+   P  S +V+   D+  + +WD E       + G  DS             
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDA-TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 129 ---HPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIG 185
                D+   +  +   + +  +     +  S +         S S     K  E  +  
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 186 ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCV 245
               + GH + V  V+          S  +D  + +W   +         + H   + C+
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKEC--KAELREHRHVVECI 191

Query: 246 DWNP-------------------HDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286
            W P                        +L+GS D +I M+D         G  +    G
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST------GMCLMTLVG 245

Query: 287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342
           H   V  V +      +  S A+D  L +WD++     +     ++ +    +   
Sbjct: 246 HDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 11/161 (6%)

Query: 182 PSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD 241
           P    +    GH   V  V F P       S  +D+ + +WD  +G     +  K H   
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDF--ERTLKGHTDS 61

Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS 301
           +  + ++              S       KL        I    GH   V  V   P+  
Sbjct: 62  VQDISFDHSGKL-------LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN-G 113

Query: 302 SVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSD 342
               S++ D  + +W+ +     + +   +  +     + D
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 154

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 7e-09
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAV 291
           V++E+A    I  +   P   +L+L  S D S+ ++             + +   +   +
Sbjct: 4   VQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYK---FDIQAKNVDLLQSLRYKHPL 59

Query: 292 LCVQWSPDKSSVFGSSAEDGILNIWDHE 319
           LC  +  +           G +   D  
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 5e-08
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGS-TPAVKVEKAHNADIHCVDWNPH 250
             +D + D++  PS          D  L ++     +    +     +   + C ++  +
Sbjct: 9   APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 251 DVNLILTGSADNSIHMFDRR 270
               I  G+    I   D  
Sbjct: 68  TDLQIYVGTVQGEILKVDLI 87

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 11/121 (9%)

Query: 200 VQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS 259
           +       +   S   D+ + LWD            +        V     D   I++G+
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIEC-----GACLRVLEGHEELVRCIRFDNKRIVSGA 235

Query: 260 ADNSIHMFDRR---KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW 316
            D  I ++D        +      +     HS  V  +Q+         SS+ D  + IW
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIW 292

Query: 317 D 317
           D
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAV 291
           +      +  ++C+ ++      I++G  DN+I ++D+                GH+ +V
Sbjct: 8   IHCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNT------LECKRILTGHTGSV 58

Query: 292 LCVQWSPDK 300
           LC+Q+    
Sbjct: 59  LCLQYDERV 67

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297
           H + +  + +        ++   DN ++ +          G+ I +    S++VL    S
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPY------GASIFQS-KESSSVLSCDIS 315

Query: 298 PDKSSVFGSSAEDGILNIWD 317
            D   +  + + D    +++
Sbjct: 316 VDDKYIV-TGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252
           HE  V  ++F     + F S G D+ L  W    G+      +   ++ +   D +  D 
Sbjct: 264 HESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA---SIFQSKESSSVLSCDISVDD- 318

Query: 253 NLILTGSADNSIHMFD 268
             I+TGS D    +++
Sbjct: 319 KYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 176 DKPLESPSIGARGKY---LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG---ST 229
              L  P I    +    L H + V  V     +       G   C+ +WD       S 
Sbjct: 30  PDALIGPGIPRHARQINTLNHGEVVCAVTISNPT--RHVYTGGKGCVKVWDISHPGNKSP 87

Query: 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF 267
            +       +  I      P D   ++ G   +++ ++
Sbjct: 88  VSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIW 124

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 7/70 (10%), Positives = 18/70 (25%), Gaps = 3/70 (4%)

Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297
           H   +  V  +      + TG     + ++D      +               +   +  
Sbjct: 50  HGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISH-PGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 298 PDKSSVFGSS 307
           PD  ++    
Sbjct: 107 PDGCTLIVGG 116

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS- 288
                 KAH+ADI  V       +  ++ S D  + ++D + L ++      +    H  
Sbjct: 5   ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 289 -----AAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
                  +  ++    +  +  +++  G L  + 
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 95

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 7e-08
 Identities = 30/235 (12%), Positives = 67/235 (28%), Gaps = 24/235 (10%)

Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG----------STPAVKVEKAHNAD 241
            H+  +  V  C S      S   D  L +WD +            S    K    H   
Sbjct: 12  AHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 242 IHCVDWNPHDVNLILTGSADNSIHMFD----RRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297
           +  ++ +  ++ L+ T S    +  +                 +   +    +   ++W 
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 298 PD----KSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY-PIIHPAYSSDMLDIETKLLT 352
                  S    ++   G   IW      ++ +   L + P +    + +     ++  T
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 353 SIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC 407
           S+ +      L+        ++I  +  L      E    +    + I     S 
Sbjct: 189 SVDIS--ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDG 276
             +      + S+ A   E AH++ +  + +N      + +   D  +  +D +      
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKT----- 320

Query: 277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329
               I     H   +   +          S AE G+ ++   +K        +
Sbjct: 321 -KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGAD 372

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 15/173 (8%), Positives = 41/173 (23%), Gaps = 26/173 (15%)

Query: 170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSG-- 227
           K   N +   +S S       L H D ++ ++          +      L+ +       
Sbjct: 42  KLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 101

Query: 228 ------STPAVKVEKAHNADIHCVDWNPHD----VNLILTGSADNSIHMFDRRKLTSDG- 276
                     +            + W   +     + ++      + +++       +  
Sbjct: 102 TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 161

Query: 277 -----------VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318
                      +   +      S     V  S       G +  +G + I + 
Sbjct: 162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFN--NGTVQISEL 212

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 8/128 (6%)

Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
                V DV+F P S +   +VG D  +  +D +SG       +            +  D
Sbjct: 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262

Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS--PDKSSVFGSSAE 309
                T  AD +I ++D            + K+      +   Q       +    S + 
Sbjct: 263 SQKFATVGADATIRVWDVTT------SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 310 DGILNIWD 317
           DG LN ++
Sbjct: 317 DGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 4/108 (3%)

Query: 196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD-IHCVDWNP-HDVN 253
               + + P++       G  + +   D      P V     H +  +  V ++P     
Sbjct: 19  FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 254 LILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GHSAAVLCVQWSPD 299
            + +G     + ++               K E    +  +  + W  +
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE 126

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-SAAVLCVQW 296
                  + ++P   N I      ++     R     D    P+ +F GH S+ V  V++
Sbjct: 16  QRNFTTHLSYDP-TTNAIAYPCGKSAFV---RCLDDGDSKVPPVVQFTGHGSSVVTTVKF 71

Query: 297 SPDKSSVF-GSSAEDGILNIWDHEK 320
           SP K S +  S  E G + +W    
Sbjct: 72  SPIKGSQYLCSGDESGKVIVWGWTF 96

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDV 252
             + +    +      +     ++  + +++        V   K HN  +  VDW P D 
Sbjct: 6   LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DS 63

Query: 253 NLILTGSADNSIHMFD 268
           N I+T   D + +++ 
Sbjct: 64  NRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 13/120 (10%)

Query: 201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA 260
                +     + G D   +L+   S +       +           +    +     +A
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGR----------LDVPKQSSQRGLTA 297

Query: 261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGILNIWD 317
                  D++  +     +       H  +V  +        K S F ++  DG ++IWD
Sbjct: 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 6e-07
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS 297
                   +    + +L+ TGS D +I ++  ++         I     H   V  + W 
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR-----PMKIIKALNAHKDGVNNLLWE 267

Query: 298 PDKSSVFGSSAEDGILNIWD 317
               S   SS  D  +  W+
Sbjct: 268 TP--STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 202 FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD 261
                     +   D+ + ++  +      +K   AH   ++ + W     + +++  AD
Sbjct: 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKI-IKALNAHKDGVNNLLWETP--STLVSSGAD 278

Query: 262 NSIHMFD 268
             I  ++
Sbjct: 279 ACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 16/92 (17%)

Query: 227 GSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG 286
           G    +K    HN  I  +  NP     +++GS D  I  +                 + 
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----------MHQD 44

Query: 287 HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH 318
           HS  ++ +  S  +     S  +   +N    
Sbjct: 45  HSNLIVSLDNSKAQEYSSISWDDTLKVNGITK 76

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 276 GVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE 323
           G    +    GH+  +  +  +P       S + DG +  W    + +
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 236 KAHNAD-IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCV 294
           + H    I C+ +     N ++TG+ D  I ++D            + +  GH   V  +
Sbjct: 9   RGHMTSVITCLQFED---NYVITGADDKMIRVYDSIN------KKFLLQLSGHDGGVWAL 59

Query: 295 QWSPDKSSVFGSSAEDGILNIWDH 318
           +++     V GS+     +     
Sbjct: 60  KYAHGGILVSGSTDRTVRVWDIKK 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK-FEGHSAAVLCVQW 296
           H+ ++  +       N++++GS +N  ++++ R       G  +H      +  +  V +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS------GKLVHANILKDADQIWSVNF 332

Query: 297 SPDKSSVFGSSAEDGILNIWD 317
                           L I D
Sbjct: 333 KGKTLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 20/145 (13%), Positives = 49/145 (33%), Gaps = 11/145 (7%)

Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD 251
           GH  +V  +           +  DD  + ++D+ +     +     H+  +  + +    
Sbjct: 10  GHMTSV--ITCLQFEDNYVITGADDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHG- 64

Query: 252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 311
             ++++GS D ++ ++D +K               +S                 + + D 
Sbjct: 65  -GILVSGSTDRTVRVWDIKK-----GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 312 ILNIWDHEKIGEKQDYGELKYPIIH 336
            L++W   K     D+GE     + 
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLV 143

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 3/64 (4%)

Query: 203 CPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN 262
               +      G ++   +++ RSG      +       I  V++      L+     D 
Sbjct: 289 TFYVSDNILVSGSENQFNIYNLRSGKLVHANIL-KDADQIWSVNFKGK--TLVAAVEKDG 345

Query: 263 SIHM 266
              +
Sbjct: 346 QSFL 349

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 16/126 (12%)

Query: 200 VQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS 259
                       S   DS + +WD ++     ++  +  N     V     + N ++T S
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKT--GQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277

Query: 260 ADNSIHMFDRRKLTSDGVGSPIHKF-----EGHSAAVLCVQWSPDKSSVFGSSA---EDG 311
            D ++ ++D +       G  I         G    V  ++ S  K      S    E+ 
Sbjct: 278 DDGTVKLWDLKT------GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331

Query: 312 ILNIWD 317
            L + D
Sbjct: 332 KLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 222 WDARSGSTPAVKVEKAHNADI-HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSP 280
           W      +P  KV K H+  +  C+ +     N I++GS DN++ ++          G  
Sbjct: 1   WRRGELKSP--KVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVT------GKC 49

Query: 281 IHKFEGHSAAVLCVQWSPD 299
           +    GH+  V   Q   +
Sbjct: 50  LRTLVGHTGGVWSSQMRDN 68

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 6e-06
 Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 12/124 (9%)

Query: 201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN----ADIHCVDWNPHDVNLIL 256
                    F S G D  ++L++   G+   V  + +      +          D   I 
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254

Query: 257 TGSADNSIHMFDRRKLTSDGVGSPIHKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGILNI 315
           + SAD +I +++                   +      +     K ++  S + +G +N 
Sbjct: 255 SASADKTIKIWNVAT------LKVEKTIPVGTRIEDQQLGIIWTKQALV-SISANGFINF 307

Query: 316 WDHE 319
            + E
Sbjct: 308 VNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 8/86 (9%), Positives = 23/86 (26%), Gaps = 7/86 (8%)

Query: 213 VGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKL 272
             + + +      S +    ++   H+        +P       +G    ++ ++D    
Sbjct: 34  YCNGTSVYTVPVGSLT--DTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDT--- 87

Query: 273 TSDGVGSPIHKFEGHSAAVLCVQWSP 298
            +             S  V  + W  
Sbjct: 88  -TQTTHILKTTIPVFSGPVKDISWDS 112

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 13/138 (9%), Positives = 34/138 (24%), Gaps = 16/138 (11%)

Query: 192 GHEDTVEDVQFCPSSAQ----EFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDW 247
               +    +  P S      E+            +   G    +   ++          
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 248 NPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS 307
                           +  +D +            K       +  ++ S D+ +V    
Sbjct: 285 GE-FAAYYQGAPEKGVLLKYDVKT----------RKVTEVKNNLTDLRLSADRKTVM-VR 332

Query: 308 AEDGILNIWDHEKIGEKQ 325
            +DG +  +  EK  +++
Sbjct: 333 KDDGKIYTFPLEKPEDER 350

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 5/133 (3%)

Query: 210 FCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR 269
             ++ D   + L D  +     +K        +H    +      +     D  ++M D 
Sbjct: 35  SVTLRDAGQIALIDGSTY---EIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDL 90

Query: 270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE 329
                  V   I       +         +       +       I D E +  K+    
Sbjct: 91  WMKEPTTVAE-IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149

Query: 330 LKYPIIHPAYSSD 342
                    Y  +
Sbjct: 150 RGMTYDEQEYHPE 162

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 18/132 (13%), Positives = 31/132 (23%), Gaps = 5/132 (3%)

Query: 212 SVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRK 271
           ++ D   + L D  S     +         +H    +      +L    D  I M D   
Sbjct: 37  TLRDAGQIALVDGDSKK---IVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWA 92

Query: 272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELK 331
                V   I       +         +       +       I D E +  KQ      
Sbjct: 93  KEPTKVA-EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 332 YPIIHPAYSSDM 343
             +    Y  + 
Sbjct: 152 MTVDTQTYHPEP 163

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 4e-04
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF-EGHSAA 290
            +V   HN  I  +  +  D   + +  A+  I+ +D         G     F + H+  
Sbjct: 5   DQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIST------GISNRVFPDVHATM 57

Query: 291 VLCVQW 296
           +  ++ 
Sbjct: 58  ITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 4e-04
 Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 2/59 (3%)

Query: 192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH 250
           GH   +  +       +   S   +  +  WD  +G +  V     H   I  +     
Sbjct: 10  GHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRV-FPDVHATMITGIKTTSK 66

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 5e-04
 Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 5/117 (4%)

Query: 201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA 260
               ++     +      +I +   +    A       +           D   + TGS 
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244

Query: 261 DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
           DNS+ +++  K +   +   I K     ++V  V W  + + V      D  +  W+
Sbjct: 245 DNSVIVWNMNKPSDHPI---IIKGAHAMSSVNSVIWLNETTIVSAGQ--DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 8e-04
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 277 VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD 317
           +GS      GH+ A+  +  S D  ++F S+  +G +N WD
Sbjct: 1   LGSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWD 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	407
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.75
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.66
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.49
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.28
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.98
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.97
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.94
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.9
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.86
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.84
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.74
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.7
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.63
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.59
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.58
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.41
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.24
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.24
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.13
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.84
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.61
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.48
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.44
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.25
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.21
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.28
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.97
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.86
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.82
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.25
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.72
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.61
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.42
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.39
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.46
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.22
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.88
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.61
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.33
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	82.7
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	82.41
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	81.74

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-38  Score=282.66  Aligned_cols=272  Identities=19%  Similarity=0.310  Sum_probs=232.1

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQ  142 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~  142 (407)
                      ..+.||.++|++|+|+| ++++||||+.||+|+|||+.+++....+.+|...+...              ++.+..|+..
T Consensus        11 ~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             EEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            35669999999999999 88999999999999999999999888888776654322              4555566655


Q ss_pred             ccccc--cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEE
Q 046899          143 DHVSA--LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLI  220 (407)
Q Consensus       143 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~  220 (407)
                      .....  +..+...............+++++.++.+++||..+++.+..+.+|...+.+++|+|++ .+|++++.|+.|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~  168 (317)
T d1vyhc1          90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVR  168 (317)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             ccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCC-CEEEEEeCCCeEE
Confidence            44322  22223333333444445668889999999999999999999999999999999999998 8999999999999


Q ss_pred             EEEcCCCCCCceeeecccCcceEEEEecCC-------------------CCCEEEEEeCCCcEEEEeCCCCCCCCCCCce
Q 046899          221 LWDARSGSTPAVKVEKAHNADIHCVDWNPH-------------------DVNLILTGSADNSIHMFDRRKLTSDGVGSPI  281 (407)
Q Consensus       221 iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~-------------------~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~  281 (407)
                      +|+++++.  ....+..|...+.+++|+|.                   .+.++++|+.||.|++||+++      ++++
T Consensus       169 ~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~------~~~~  240 (317)
T d1vyhc1         169 VWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST------GMCL  240 (317)
T ss_dssp             EEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT------TEEE
T ss_pred             EEeeccce--eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC------CcEE
Confidence            99999888  67788889999999999873                   235799999999999999998      8999


Q ss_pred             eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcc
Q 046899          282 HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHG  361 (407)
Q Consensus       282 ~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~  361 (407)
                      .++.+|...|.+++|+|++++| ++|+.||.|++||+++++.+..+.+|..+|++++|+|+                  +
T Consensus       241 ~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~------------------~  301 (317)
T d1vyhc1         241 MTLVGHDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT------------------A  301 (317)
T ss_dssp             EEEECCSSCEEEEEECSSSSCE-EEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS------------------S
T ss_pred             EEEeCCCCCEEEEEECCCCCEE-EEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCC------------------C
Confidence            9999999999999999999966 69999999999999999999999999999999999998                  8


Q ss_pred             ceeeeEEEeeeEEEee
Q 046899          362 RLLVCLTMVKVLEIWR  377 (407)
Q Consensus       362 ~~i~~~~~d~~i~iwd  377 (407)
                      ..|++++.|++|+|||
T Consensus       302 ~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         302 PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEETTSEEEEEC
T ss_pred             CEEEEEeCCCeEEEeC
Confidence            8999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=274.30  Aligned_cols=293  Identities=14%  Similarity=0.192  Sum_probs=232.3

Q ss_pred             ceEEEeeeecccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEE
Q 046899           24 PVLYDWLANHNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVA  100 (407)
Q Consensus        24 ~~~y~~l~~~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  100 (407)
                      |--...++..++.-+...+.|.|+   +++++ |+.+++|   ++...............+|.+.|++++|+| ++++|+
T Consensus        39 p~~~~~~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iW---d~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-dg~~l~  113 (337)
T d1gxra_          39 PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVW---DISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLI  113 (337)
T ss_dssp             CSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEE---ETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEE
T ss_pred             CCCceEEEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEE---EccCCcccceeEEeeecCCCCcEEEEEEcC-CCCEEE
Confidence            444455566667778888899874   77876 7889999   444333333444555567999999999999 889999


Q ss_pred             EeeCCCcEEEEeCcCCCCc--ccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCC
Q 046899          101 THTDSPDVLIWDVEAQPNR--HAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKP  178 (407)
Q Consensus       101 tg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i  178 (407)
                      +|+.||.|++||+......  ..+..+...       +.                   ..........+++++.++.+++
T Consensus       114 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------v~-------------------~~~~~~~~~~l~s~~~d~~i~~  167 (337)
T d1gxra_         114 VGGEASTLSIWDLAAPTPRIKAELTSSAPA-------CY-------------------ALAISPDSKVCFSCCSDGNIAV  167 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSSC-------EE-------------------EEEECTTSSEEEEEETTSCEEE
T ss_pred             Eeeccccccccccccccccccccccccccc-------cc-------------------cccccccccccccccccccccc
Confidence            9999999999998754322  222222111       11                   1111122345677889999999


Q ss_pred             CCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE
Q 046899          179 LESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG  258 (407)
Q Consensus       179 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg  258 (407)
                      |+..+++......+|...|.+++|++++ ..+++++.|+.|++||+++++  .... ..|...|.+++|+| ++++|++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~--~~~~-~~~~~~i~~l~~~~-~~~~l~~~  242 (337)
T d1gxra_         168 WDLHNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGR--QLQQ-HDFTSQIFSLGYCP-TGEWLAVG  242 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEE-EECSSCEEEEEECT-TSSEEEEE
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccccccccce--eecc-cccccceEEEEEcc-ccccccee
Confidence            9999999988888999999999999998 789999999999999999887  3444 46889999999999 89999999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCC
Q 046899          259 SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPA  338 (407)
Q Consensus       259 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  338 (407)
                      +.||.|++||++.      .+. .....|...|++++|+|++++| ++++.|+.|++||+.+++.+..+ .|..+|++++
T Consensus       243 ~~d~~i~i~d~~~------~~~-~~~~~~~~~i~~v~~s~~g~~l-~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~  313 (337)
T d1gxra_         243 MESSNVEVLHVNK------PDK-YQLHLHESCVLSLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCD  313 (337)
T ss_dssp             ETTSCEEEEETTS------SCE-EEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEE
T ss_pred             ccccccccccccc------ccc-ccccccccccceEEECCCCCEE-EEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEE
Confidence            9999999999997      444 4566799999999999999965 69999999999999998877665 4678899999


Q ss_pred             CcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          339 YSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       339 ~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      |+||                  +.+|++|+.|++|+|||+.
T Consensus       314 ~s~d------------------~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         314 ISVD------------------DKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ECTT------------------SCEEEEEETTSCEEEEEEE
T ss_pred             EeCC------------------CCEEEEEeCCCeEEEEEEE
Confidence            9998                  8899999999999999973

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-36  Score=275.45  Aligned_cols=312  Identities=16%  Similarity=0.171  Sum_probs=224.5

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      ....+..++...+|...    ....-........+|.+.|++|+|+| +|++||+|+ |++|+|||+.+++....+..+.
T Consensus        30 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~  103 (388)
T d1erja_          30 DALKKQTNDYYILYNPA----LPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDS  103 (388)
T ss_dssp             TTSEEECSSCEEEECTT----SCCCEEEEEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC--
T ss_pred             cccccCCCCcEEEeCCC----CCcceeeeeEeeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccc
Confidence            34455556666677211    11112233456668999999999999 889999987 8999999999877554443221


Q ss_pred             CC------------------------CCCC--------CCcEEEEeccccccc--cccCCCCCcccccCCCCCccccccC
Q 046899          127 DS------------------------HPDL--------DQSVVLWSIQDHVSA--LAAEPGSAKSTASGGANSKNASKSG  172 (407)
Q Consensus       127 ~~------------------------~~~~--------d~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  172 (407)
                      ..                        .++.        |+.|++|+.......  ...+...+...........++.++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  183 (388)
T d1erja_         104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG  183 (388)
T ss_dssp             ---------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            11                        1111        899999999876443  3334444444555555567888999


Q ss_pred             CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC-----ceeeecccCcceEEEEe
Q 046899          173 GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP-----AVKVEKAHNADIHCVDW  247 (407)
Q Consensus       173 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~l~~  247 (407)
                      ++.+++||..+.........+. ...++.+.+..+.+|++|+.||.|++||.+++...     ......+|...|.+++|
T Consensus       184 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  262 (388)
T d1erja_         184 DRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  262 (388)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             ceeeeeeecccccccccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence            9999999999888777666554 45566666644489999999999999999987621     11123468889999999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCCCCC------CCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          248 NPHDVNLILTGSADNSIHMFDRRKLTSDG------VGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       248 ~~~~~~~l~tg~~dg~i~vwd~~~~~~~~------~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      +| ++++|++|+.||.|++||++......      ..........|...|.+++|+|++++| ++|+.||.|++||++++
T Consensus       263 s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         263 TR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI-LSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             CT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEE-EEEETTSEEEEEETTTC
T ss_pred             CC-CCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEE-EEEeCCCEEEEEECCCC
Confidence            99 89999999999999999997633110      023445666789999999999999965 69999999999999999


Q ss_pred             CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          322 GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       322 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +.+..+.+|..+|+++++++.            ..+...+..|++|+.|++|+|||+.
T Consensus       341 ~~~~~l~~H~~~V~~~~~~~~------------~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         341 NPLLMLQGHRNSVISVAVANG------------SSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECCSSCEEEEEECSS------------CTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cEEEEEeCCCCCEEEEEEecC------------cccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999877654332            1122227899999999999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-35  Score=266.28  Aligned_cols=270  Identities=18%  Similarity=0.268  Sum_probs=218.0

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEecc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQ  142 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~  142 (407)
                      ..+.||.++|++|+|+| ++++||||+.||+|+|||+.+++....+..|...+...              |+.+.+|+..
T Consensus        49 ~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             EEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            34558999999999999 88999999999999999999988777777665543222              7888999876


Q ss_pred             cccccc------ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC
Q 046899          143 DHVSAL------AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD  216 (407)
Q Consensus       143 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d  216 (407)
                      ......      ..+.. ............+.....+.....+.............+...+....+.+.+ .++++|+.|
T Consensus       128 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d  205 (340)
T d1tbga_         128 TREGNVRVSRELAGHTG-YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACD  205 (340)
T ss_dssp             SSCSCCCEEEEECCCSS-CEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             ccccccccceecccccc-cccccccccccccccccccccccccccccccccccccccceeEeeecccccc-ceeEEeecC
Confidence            542211      11111 1111111112334445566666666666666666666788899999999988 899999999


Q ss_pred             CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee--cCCCCCEEEE
Q 046899          217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF--EGHSAAVLCV  294 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~--~~h~~~v~~v  294 (407)
                      +.|++||+++++  ....+.+|...|++++|+| ++++|++|+.||.|++||++.      ...+..+  ..+...|.++
T Consensus       206 ~~v~i~d~~~~~--~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~------~~~~~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         206 ASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             TEEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTCCSCEEEE
T ss_pred             ceEEEEECCCCc--EEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecc------cccccccccccccCceEEE
Confidence            999999999888  6778889999999999999 899999999999999999998      5666555  3567789999


Q ss_pred             EEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEE
Q 046899          295 QWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLE  374 (407)
Q Consensus       295 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~  374 (407)
                      +|+|++.+| ++|+.||.|++||+.+++.+..+.+|..+|++++|+||                  +..|++|+.||+|+
T Consensus       277 ~~s~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d------------------~~~l~s~s~Dg~v~  337 (340)
T d1tbga_         277 SFSKSGRLL-LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD------------------GMAVATGSWDSFLK  337 (340)
T ss_dssp             EECSSSCEE-EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------SSCEEEEETTSCEE
T ss_pred             EECCCCCEE-EEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCC------------------CCEEEEEccCCEEE
Confidence            999999965 69999999999999999999999999999999999998                  88999999999999


Q ss_pred             Eee
Q 046899          375 IWR  377 (407)
Q Consensus       375 iwd  377 (407)
                      |||
T Consensus       338 iWd  340 (340)
T d1tbga_         338 IWN  340 (340)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-35  Score=261.28  Aligned_cols=245  Identities=18%  Similarity=0.266  Sum_probs=193.5

Q ss_pred             EeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc--cccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           79 TIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH--AVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        79 ~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      ..+|.+.|++++|+| ++++||+|+.||+|+|||+.+.....  .+..|...       |         ..+.+.+    
T Consensus        54 ~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------v---------~~v~~s~----  112 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP-------V---------KDISWDS----  112 (311)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC-------E---------EEEEECT----
T ss_pred             EcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccccccccccccccCc-------c---------ccccccc----
Confidence            458999999999999 89999999999999999998876442  23333221       1         1111111    


Q ss_pred             ccccCCCCCccccccC--CCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee
Q 046899          157 STASGGANSKNASKSG--GNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV  234 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  234 (407)
                            ....+++++.  +..+++|+.++++....+.+|...|++++|+|+++..|++|+.|+.|++||+++.+  ....
T Consensus       113 ------d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~--~~~~  184 (311)
T d1nr0a1         113 ------ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKST  184 (311)
T ss_dssp             ------TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEE
T ss_pred             ------cccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccc--cccc
Confidence                  1223444443  45578899999999999999999999999999986679999999999999999887  6778


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-------CCCCCEEEEEEcCCCCCEEEEe
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-------GHSAAVLCVQWSPDKSSVFGSS  307 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~ll~s~  307 (407)
                      ...|..+|+++.|+| +++++++|+.||.|++||.+.      +..+..+.       +|...|++++|+|++++| ++|
T Consensus       185 ~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~------~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l-~tg  256 (311)
T d1nr0a1         185 FGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASA  256 (311)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE-EEE
T ss_pred             cccccccccccccCc-ccccccccccccccccccccc------ccccccccccccccccccccccccccCCCCCEE-EEE
Confidence            889999999999999 999999999999999999988      55555543       588999999999999965 699


Q ss_pred             eCCCeEEEEeCCCCCcccccccCCCcc-cCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          308 AEDGILNIWDHEKIGEKQDYGELKYPI-IHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       308 ~~d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      +.||+|+|||+++++.++++..+.... ..+.+                  ..++..|++++.||.|++||.
T Consensus       257 s~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~------------------~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI------------------IWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE------------------EECSSCEEEEETTCCEEEEET
T ss_pred             eCCCeEEEEECCCCcEEEEEECCCCccceEEEE------------------EecCCEEEEEECCCEEEEEeC
Confidence            999999999999988888776554311 11111                  112667999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=265.70  Aligned_cols=273  Identities=15%  Similarity=0.240  Sum_probs=219.7

Q ss_pred             eeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCC
Q 046899           74 VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPG  153 (407)
Q Consensus        74 ~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~  153 (407)
                      .+....++|...|++++|+| ++++||||+ ||.|+|||+.+......+..              .....       +..
T Consensus        42 ~~~~~~~~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~--------------~~~~~-------h~~   98 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQ--------------LDCLN-------RDN   98 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEE--------------EECSC-------TTS
T ss_pred             ceEEEECCCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEE--------------eeecC-------CCC
Confidence            35566778999999999999 899999997 79999999987654332211              01000       111


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCCCCCc--CceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc
Q 046899          154 SAKSTASGGANSKNASKSGGNGDKPLESPSI--GARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA  231 (407)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  231 (407)
                      .+..+........+++++.|+.+++||+...  +....+..|...+.+++|+|++ .++++++.|+.|++||+++++  .
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~--~  175 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQT--L  175 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--E
T ss_pred             cEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc--c
Confidence            1111122223345788899999999998654  4456677899999999999998 899999999999999999887  6


Q ss_pred             eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          232 VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      ......|...|.+++|++ ++..+++|+.||.|++||+++      ++.+..+. |...|.+++|+|++.++ ++++.|+
T Consensus       176 ~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~------~~~~~~~~-~~~~i~~l~~~~~~~~l-~~~~~d~  246 (337)
T d1gxra_         176 VRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE------GRQLQQHD-FTSQIFSLGYCPTGEWL-AVGMESS  246 (337)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------TEEEEEEE-CSSCEEEEEECTTSSEE-EEEETTS
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccc------ceeecccc-cccceEEEEEccccccc-ceecccc
Confidence            777788999999999999 899999999999999999998      77777775 78899999999999865 6999999


Q ss_pred             eEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHH
Q 046899          312 ILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA  391 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~  391 (407)
                      .|++||+++.+.. ....|..+|++++|+|+                  +..|++++.|++|++||+.      +++++.
T Consensus       247 ~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~------------------g~~l~s~s~Dg~i~iwd~~------~~~~~~  301 (337)
T d1gxra_         247 NVEVLHVNKPDKY-QLHLHESCVLSLKFAYC------------------GKWFVSTGKDNLLNAWRTP------YGASIF  301 (337)
T ss_dssp             CEEEEETTSSCEE-EECCCSSCEEEEEECTT------------------SSEEEEEETTSEEEEEETT------TCCEEE
T ss_pred             ccccccccccccc-cccccccccceEEECCC------------------CCEEEEEeCCCeEEEEECC------CCCEEE
Confidence            9999999986654 45678888999999998                  8899999999999999998      555554


Q ss_pred             HHhhcccceeEeeccC
Q 046899          392 ELDKFKSHIFGCDKSC  407 (407)
Q Consensus       392 ~~~~h~~~v~~~~~s~  407 (407)
                      . .+|.+.|++++||+
T Consensus       302 ~-~~~~~~v~~~~~s~  316 (337)
T d1gxra_         302 Q-SKESSSVLSCDISV  316 (337)
T ss_dssp             E-EECSSCEEEEEECT
T ss_pred             E-ccCCCCEEEEEEeC
Confidence            4 35888999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-33  Score=247.32  Aligned_cols=271  Identities=12%  Similarity=0.120  Sum_probs=193.0

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccccc-CcCCCCCCC-------------CCcEEEEecc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL-GAADSHPDL-------------DQSVVLWSIQ  142 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~-------------d~~i~~w~~~  142 (407)
                      ..+.||.++|++|+|+| ++++|+||+.||+|++||+.+++....+. .|...+.+.             |+.+++|+..
T Consensus         6 ~~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            34458999999999999 89999999999999999999887665553 343332211             8899999976


Q ss_pred             ccccc-----cccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCC
Q 046899          143 DHVSA-----LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDS  217 (407)
Q Consensus       143 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg  217 (407)
                      .....     ................ ..+++++.++.+.+|+....  ...  .....+.+++|+|++ .+|++|+.||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~~~~~~i~~~~~~~~--~~~--~~~~~~~~~~~s~~~-~~l~~g~~dg  158 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSAD-GDIAVAACYKHIAIYSHGKL--TEV--PISYNSSCVALSNDK-QFVAVGGQDS  158 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTT-SSCEEEEESSEEEEEETTEE--EEE--ECSSCEEEEEECTTS-CEEEEEETTS
T ss_pred             Cccccccccccccccccccccccccc-cccccccccccccccccccc--ccc--ccccccccccccccc-cccccccccc
Confidence            54211     1111111111111111 22445556677888875432  111  244568899999998 8999999999


Q ss_pred             cEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc
Q 046899          218 CLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS  297 (407)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~  297 (407)
                      .|++||+++.+. .......|...|++++|+| ++.+|++++.||.|++||+.+...   ......+.+|..+|++++|+
T Consensus       159 ~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         159 KVHVYKLSGASV-SEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFE---LAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             EEEEEEEETTEE-EEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTE---ESCCCCCCCCSSCEEEEEEC
T ss_pred             cccccccccccc-ccccccccccccccccccc-cccccccccccccccccccccccc---cccccccccccccccccccc
Confidence            999999987762 1234457899999999999 899999999999999999987211   12345667799999999999


Q ss_pred             CCCCCEEEEeeCCCeEEEEeCCCCCcccccc--cC-CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEE
Q 046899          298 PDKSSVFGSSAEDGILNIWDHEKIGEKQDYG--EL-KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLE  374 (407)
Q Consensus       298 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~--~~-~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~  374 (407)
                      |++.++ ++|+.|+.|++||+++........  .+ ...+..+. ++                  .+..|++++.|++|+
T Consensus       234 ~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~------------------~~~~l~s~s~D~~i~  293 (299)
T d1nr0a2         234 PDNVRL-ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WL------------------NETTIVSAGQDSNIK  293 (299)
T ss_dssp             TTSSEE-EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EE------------------ETTEEEEEETTSCEE
T ss_pred             ccccce-EEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-EC------------------CCCEEEEEeCCCEEE
Confidence            999965 799999999999999765443222  22 22222221 12                  256899999999999


Q ss_pred             Eeecc
Q 046899          375 IWRMI  379 (407)
Q Consensus       375 iwd~~  379 (407)
                      |||+.
T Consensus       294 iWdl~  298 (299)
T d1nr0a2         294 FWNVP  298 (299)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-32  Score=244.99  Aligned_cols=266  Identities=18%  Similarity=0.263  Sum_probs=206.7

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      ++.-+..++.|.|+   +++++.|+.+++|-   ...     .........|.+.|++++|+| +++++++|+.|+.+++
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd---~~~-----~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWD---SYT-----TNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEE---TTT-----TEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeee---ccc-----ceeEEEEecccccEEeeEeec-cceeeeeecccceeec
Confidence            35667888899874   89999999999992   211     122334457999999999999 8899999999999999


Q ss_pred             EeCcCCCCccc----ccCcCCCCCCC-------------CCcEEEEeccccccc--cccCCCCCcccccCCCCCcccccc
Q 046899          111 WDVEAQPNRHA----VLGAADSHPDL-------------DQSVVLWSIQDHVSA--LAAEPGSAKSTASGGANSKNASKS  171 (407)
Q Consensus       111 wd~~~~~~~~~----~~~~~~~~~~~-------------d~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  171 (407)
                      |+.........    +.++.......             +.....+........  ...................++++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            99876543322    22222211100             445555554443221  112222233344444556678899


Q ss_pred             CCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCC
Q 046899          172 GGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHD  251 (407)
Q Consensus       172 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~  251 (407)
                      .++.+++||..+++.+..+.+|...|++++|+|++ .+|++|+.||.|++||++............+...|.+++|+| +
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~  281 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-S  281 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-S
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC-C
Confidence            99999999999999999999999999999999999 899999999999999999877322333456677899999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          252 VNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       252 ~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      +++|++|+.||.|++||+++      ++++.++.+|..+|++++|+|++.+| +||+.||+|+|||
T Consensus       282 ~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd  340 (340)
T d1tbga_         282 GRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTT------CCEEEEECCCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             CCEEEEEECCCEEEEEECCC------CcEEEEEcCCCCCEEEEEEeCCCCEE-EEEccCCEEEEeC
Confidence            99999999999999999998      89999999999999999999999976 6999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-33  Score=255.41  Aligned_cols=297  Identities=19%  Similarity=0.294  Sum_probs=217.2

Q ss_pred             hhhhhhhhccCceEEEeeee--cccCCCeeEEEEeec---ccccCccceEEEEeecc------cCcc----cCCcceeeE
Q 046899           13 DDRYTQWKSLVPVLYDWLAN--HNLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQ------FNEE----ARSPFVKKF   77 (407)
Q Consensus        13 ~~~~~~w~~~~~~~y~~l~~--~~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~------~~~~----~~~~~~~~~   77 (407)
                      ++.+.+|++..|..++....  .++.-+..++.|.|+   +++++ |+.+++|-...      +...    .........
T Consensus        37 ~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (388)
T d1erja_          37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS  115 (388)
T ss_dssp             SSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------
T ss_pred             CCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccc
Confidence            55677888877766554333  345567788899884   77775 88999994330      0000    011112223


Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC--------------CCcEEEEeccc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL--------------DQSVVLWSIQD  143 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------d~~i~~w~~~~  143 (407)
                      ....|...|++|+|+| ++++|++|+.||.|++||...++......+|...+...              ++.+++||...
T Consensus       116 ~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~  194 (388)
T d1erja_         116 SSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  194 (388)
T ss_dssp             ---CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccCCCCCEEEEEECC-CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc
Confidence            3446889999999999 89999999999999999999887766666655443222              88999999987


Q ss_pred             cccccccCCC--CCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEe-------ecccCEEEEEECCCCCcEEEEEe
Q 046899          144 HVSALAAEPG--SAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYL-------GHEDTVEDVQFCPSSAQEFCSVG  214 (407)
Q Consensus       144 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~~l~s~~  214 (407)
                      ..........  .............+++++.++.+++|+..++.....+.       +|...|.+++|+|++ .+|++|+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~  273 (388)
T d1erja_         195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGS  273 (388)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             cccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC-CEEEEEE
Confidence            6443222111  11222222334567889999999999999887766553       578899999999998 8999999


Q ss_pred             CCCcEEEEEcCCCCC----------CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee
Q 046899          215 DDSCLILWDARSGST----------PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF  284 (407)
Q Consensus       215 ~dg~i~iwd~~~~~~----------~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~  284 (407)
                      .||.|++||+++...          ........|...|.+++|+| ++++|++|+.||.|++||+++      ++++.++
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~------~~~~~~l  346 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKS------GNPLLML  346 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTT------CCEEEEE
T ss_pred             CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCC------CcEEEEE
Confidence            999999999986542          12344557889999999999 899999999999999999998      8999999


Q ss_pred             cCCCCCEEEEEE------cCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          285 EGHSAAVLCVQW------SPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       285 ~~h~~~v~~v~~------~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      ++|.+.|+++++      +|++.+ ||||+.||+|+|||+++
T Consensus       347 ~~H~~~V~~~~~~~~~~~spd~~~-l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         347 QGHRNSVISVAVANGSSLGPEYNV-FATGSGDCKARIWKYKK  387 (388)
T ss_dssp             ECCSSCEEEEEECSSCTTCTTCEE-EEEEETTSEEEEEEEEE
T ss_pred             eCCCCCEEEEEEecCcccCCCCCE-EEEEeCCCEEEEEeeee
Confidence            999999999985      567774 57999999999999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-33  Score=250.05  Aligned_cols=263  Identities=15%  Similarity=0.190  Sum_probs=211.3

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      +.+.+..++++| +++.||.++ ++.|.+||+.+......+.+|...+                          ..+...
T Consensus        16 ~r~~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v--------------------------~~~~~s   67 (311)
T d1nr0a1          16 ARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQT--------------------------TVAKTS   67 (311)
T ss_dssp             CTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCE--------------------------EEEEEC
T ss_pred             CCCCeEEEEEcC-CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCE--------------------------EEEEEe
Confidence            556777889999 777888876 4679999999887776666664431                          111122


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCce--eeEeecccCEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCCCceeeecc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGAR--GKYLGHEDTVEDVQFCPSSAQEFCSVGD--DSCLILWDARSGSTPAVKVEKA  237 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~  237 (407)
                      +....+++++.|+.+++||....+..  ..+..|...|.+++|+|++ .+|++++.  +..+++|++++++  ....+.+
T Consensus        68 p~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~--~~~~l~~  144 (311)
T d1nr0a1          68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGT--SNGNLTG  144 (311)
T ss_dssp             TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCC--BCBCCCC
T ss_pred             CCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc-ccccccccccccccccccccccc--ccccccc
Confidence            22345788999999999999887654  4577899999999999999 78888875  4569999999887  5677889


Q ss_pred             cCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          238 HNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       238 ~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      |...|++++|+|.+...|++|+.||.|++||+++      ++....+..|..+|++++|+|+++++ ++++.|+.|++||
T Consensus       145 h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~------~~~~~~~~~~~~~i~~v~~~p~~~~l-~~~~~d~~v~~~d  217 (311)
T d1nr0a1         145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP------FKFKSTFGEHTKFVHSVRYNPDGSLF-ASTGGDGTIVLYN  217 (311)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT------BEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEE
T ss_pred             cccccccccccccceeeecccccccccccccccc------cccccccccccccccccccCcccccc-ccccccccccccc
Confidence            9999999999994344688999999999999998      88999999999999999999999955 7999999999999


Q ss_pred             CCCCCccccc-------ccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHH
Q 046899          318 HEKIGEKQDY-------GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVL  390 (407)
Q Consensus       318 ~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~  390 (407)
                      +.+......+       .+|..+|++++|+|+                  +.+|++|+.|++|+|||++      +++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~------------------~~~l~tgs~Dg~v~iwd~~------t~~~~  273 (311)
T d1nr0a1         218 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD------------------GTKIASASADKTIKIWNVA------TLKVE  273 (311)
T ss_dssp             TTTCCEEEECBCTTSSSCSSSSCEEEEEECTT------------------SSEEEEEETTSEEEEEETT------TTEEE
T ss_pred             cccccccccccccccccccccccccccccCCC------------------CCEEEEEeCCCeEEEEECC------CCcEE
Confidence            9987665443       356778889999888                  8899999999999999998      77777


Q ss_pred             HHHhhccc---ceeEeecc
Q 046899          391 AELDKFKS---HIFGCDKS  406 (407)
Q Consensus       391 ~~~~~h~~---~v~~~~~s  406 (407)
                      +.+..|..   .+.++.|+
T Consensus       274 ~~l~~~~~~~~~~~~~~~~  292 (311)
T d1nr0a1         274 KTIPVGTRIEDQQLGIIWT  292 (311)
T ss_dssp             EEEECCSSGGGCEEEEEEC
T ss_pred             EEEECCCCccceEEEEEec
Confidence            77776643   34556554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-33  Score=257.18  Aligned_cols=230  Identities=13%  Similarity=0.133  Sum_probs=187.6

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccC
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG  161 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  161 (407)
                      +.++|+|++|+| ++++||+|+.||.|+|||..+++.                                           
T Consensus         6 ~~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~-------------------------------------------   41 (371)
T d1k8kc_           6 LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKW-------------------------------------------   41 (371)
T ss_dssp             CSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEE-------------------------------------------
T ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCE-------------------------------------------
Confidence            457899999999 899999999999999999865321                                           


Q ss_pred             CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcc
Q 046899          162 GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNAD  241 (407)
Q Consensus       162 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  241 (407)
                                             ..+..+.+|.++|++|+|+|++ ++|++|+.|++|++||++++.......+..|...
T Consensus        42 -----------------------~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~   97 (371)
T d1k8kc_          42 -----------------------VQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA   97 (371)
T ss_dssp             -----------------------EEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred             -----------------------EEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeeccccccccccccccccc
Confidence                                   1345677899999999999999 8999999999999999987764345556788999


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      |.+++|+| +++.|++|+.|+.|++|++......  .........|...|.+++|+|++.+| ++|+.|++|++||+...
T Consensus        98 v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_          98 ARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW--WVCKHIKKPIRSTVLSLDWHPNSVLL-AAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             EEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE--EEEEEECTTCCSCEEEEEECTTSSEE-EEEETTSCEEEEECCCT
T ss_pred             cccccccc-ccccceeecccCcceeeeeeccccc--ccccccccccccccccccccccccce-eccccCcEEEEEeeccC
Confidence            99999999 8999999999999999998762210  01233456789999999999999965 79999999999998753


Q ss_pred             Cc------------------ccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecccccc
Q 046899          322 GE------------------KQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIY  383 (407)
Q Consensus       322 ~~------------------~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~  383 (407)
                      ..                  +.....|...|.+++|+|+                  +..|++++.|++|++||+.    
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------g~~l~s~~~d~~i~iwd~~----  231 (371)
T d1k8kc_         174 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN------------------GSRVAWVSHDSTVCLADAD----  231 (371)
T ss_dssp             TTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS------------------SSEEEEEETTTEEEEEEGG----
T ss_pred             ccccccccccccccccceeeeeeccCccCcEEEEEeecc------------------cccccccccCCcceEEeee----
Confidence            32                  2223345555666666666                  7889999999999999998    


Q ss_pred             CChHHHHHHHhhcccceeEeeccC
Q 046899          384 RPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       384 ~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                        .++++..+.+|...|.+++|++
T Consensus       232 --~~~~~~~~~~~~~~v~s~~fs~  253 (371)
T d1k8kc_         232 --KKMAVATLASETLPLLAVTFIT  253 (371)
T ss_dssp             --GTTEEEEEECSSCCEEEEEEEE
T ss_pred             --cccceeeeecccccceeeeecC
Confidence              7788888999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-32  Score=249.76  Aligned_cols=301  Identities=13%  Similarity=0.137  Sum_probs=208.7

Q ss_pred             CCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEe
Q 046899           36 VWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD  112 (407)
Q Consensus        36 ~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  112 (407)
                      .-|..++.|.|+   +++++.++.+++|-.     + .........+.+|.++|++|+|+| ++++|++|+.|++|+|||
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~-----~-~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEK-----S-GNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEE-----E-TTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEC-----C-CCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEe
Confidence            347778899884   778899999999922     1 112223344458999999999999 889999999999999999


Q ss_pred             CcCCCCcccc--cCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee-
Q 046899          113 VEAQPNRHAV--LGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK-  189 (407)
Q Consensus       113 ~~~~~~~~~~--~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-  189 (407)
                      +.+......+  ..+...       +.                   .+...+....+++++.++.+++|+......... 
T Consensus        80 ~~~~~~~~~~~~~~~~~~-------v~-------------------~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRA-------AR-------------------CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             EETTEEEEEEECCCCSSC-------EE-------------------EEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             eccccccccccccccccc-------cc-------------------ccccccccccceeecccCcceeeeeecccccccc
Confidence            9865432221  122111       11                   111122234577888999999998766554322 


Q ss_pred             ---EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC----------------CceeeecccCcceEEEEecCC
Q 046899          190 ---YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST----------------PAVKVEKAHNADIHCVDWNPH  250 (407)
Q Consensus       190 ---~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~l~~~~~  250 (407)
                         ...|...|.+++|+|++ .+|++|+.|+.|++||+.....                ........|...|.+++|+| 
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-  211 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-  211 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-
T ss_pred             cccccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-
Confidence               33588899999999999 8999999999999999875421                12345567888999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccC
Q 046899          251 DVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGEL  330 (407)
Q Consensus       251 ~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  330 (407)
                      ++++|++++.||.|++||++.      +..+..+..|..+|.+++|+|++. ++++ +.|+.+++|..........+...
T Consensus       212 ~g~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~v~s~~fs~d~~-~la~-g~d~~~~~~~~~~~~~~~~~~~~  283 (371)
T d1k8kc_         212 NGSRVAWVSHDSTVCLADADK------KMAVATLASETLPLLAVTFITESS-LVAA-GHDCFPVLFTYDSAAGKLSFGGR  283 (371)
T ss_dssp             SSSEEEEEETTTEEEEEEGGG------TTEEEEEECSSCCEEEEEEEETTE-EEEE-ETTSSCEEEEEETTTTEEEECCC
T ss_pred             ccccccccccCCcceEEeeec------ccceeeeecccccceeeeecCCCC-EEEE-EcCCceEEEEeeCCCceEEEeee
Confidence            899999999999999999998      889999999999999999999997 5555 45787777765443222211110


Q ss_pred             C---Ccc--cC-------------------CCCcCcchhccccceeeeeEeeCccc---eeeeEEEeeeEEEeecc
Q 046899          331 K---YPI--IH-------------------PAYSSDMLDIETKLLTSIGMHLIHGR---LLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       331 ~---~~v--~~-------------------~~~s~d~~~~~~~~~~~~~~~~~~~~---~i~~~~~d~~i~iwd~~  379 (407)
                      -   ...  ..                   ......+...+.+.+..+..+.++..   .+++++.||+|+|||++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             CCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence            0   000  00                   00000012223444555555555443   47899999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-32  Score=239.07  Aligned_cols=279  Identities=15%  Similarity=0.267  Sum_probs=225.9

Q ss_pred             hhhhccCceEEEeeeecccCCCeeEEEEee---cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeC
Q 046899           17 TQWKSLVPVLYDWLANHNLVWPSLSCRWGP---QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELP   93 (407)
Q Consensus        17 ~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~   93 (407)
                      |.|.+..|..|. |.  ++.-|..++.|.|   .+++++.|+.+++|   ++...     .......+|.+.|++++|+|
T Consensus         1 k~w~p~~~~~~~-L~--GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iW---d~~~~-----~~~~~~~~h~~~V~~~~~~~   69 (317)
T d1vyhc1           1 KEWIPRPPEKYA-LS--GHRSPVTRVIFHPVFSVMVSASEDATIKVW---DYETG-----DFERTLKGHTDSVQDISFDH   69 (317)
T ss_dssp             CCCCCCSSCSCE-EE--CCSSCEEEEEECSSSSEEEEEESSSCEEEE---ETTTC-----CCCEEECCCSSCEEEEEECT
T ss_pred             CccCCCCCccEE-Ec--CCCCCeEEEEEcCCCCEEEEEeCCCeEEEE---ECCCC-----CEEEEEeCCCCcEEEEeeec
Confidence            467777665542 22  3455778889987   48899999999999   22211     12233457999999999999


Q ss_pred             CCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCC------C--------CCcEEEEecccccc--ccccCCCCCcc
Q 046899           94 QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPD------L--------DQSVVLWSIQDHVS--ALAAEPGSAKS  157 (407)
Q Consensus        94 ~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------~--------d~~i~~w~~~~~~~--~~~~~~~~~~~  157 (407)
                       ++.++++++.++.+.+|+.........+..+......      .        |+.+.+|++.++..  .+..+......
T Consensus        70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (317)
T d1vyhc1          70 -SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM  148 (317)
T ss_dssp             -TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             -ccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCccee
Confidence             8899999999999999999877655544443332211      1        89999999987643  33444444444


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCC-------------------CcEEEEEeCCCc
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSS-------------------AQEFCSVGDDSC  218 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~-------------------~~~l~s~~~dg~  218 (407)
                      .........+++++.++.+++|+...++....+.+|...+.+++|+|++                   ..++++++.|+.
T Consensus       149 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  228 (317)
T d1vyhc1         149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  228 (317)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             eecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence            5555556678899999999999999999999999999999999998864                   146899999999


Q ss_pred             EEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcC
Q 046899          219 LILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSP  298 (407)
Q Consensus       219 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  298 (407)
                      |++||+++++  .+..+.+|...|.+++|+| ++++|++|+.||.|++||+++      ++++.++.+|..+|++++|+|
T Consensus       229 i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~h~~~V~~~~~s~  299 (317)
T d1vyhc1         229 IKMWDVSTGM--CLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN------KRCMKTLNAHEHFVTSLDFHK  299 (317)
T ss_dssp             EEEEETTTTE--EEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTT------SCCCEEEECCSSCEEEEEECS
T ss_pred             EEEEECCCCc--EEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCC------CcEEEEEcCCCCCEEEEEEcC
Confidence            9999999888  6788889999999999999 899999999999999999998      899999999999999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEe
Q 046899          299 DKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       299 ~~~~ll~s~~~d~~i~vwd  317 (407)
                      ++++| +||+.||+|+|||
T Consensus       300 ~~~~l-~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         300 TAPYV-VTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSCE-EEEETTSEEEEEC
T ss_pred             CCCEE-EEEeCCCeEEEeC
Confidence            99976 6999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-32  Score=240.51  Aligned_cols=292  Identities=16%  Similarity=0.234  Sum_probs=224.2

Q ss_pred             EEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc
Q 046899           42 CRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH  120 (407)
Q Consensus        42 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~  120 (407)
                      ++|.+ .+++++.|+.+++|   +..  ..   .......+|.+.|.+++|+| +  +|++|+.|+.+++|+........
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vW---d~~--~~---~~~~~~~~h~~~V~~v~~~~-~--~l~s~s~D~~~~~~~~~~~~~~~   91 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVW---SAV--TG---KCLRTLVGHTGGVWSSQMRD-N--IIISGSTDRTLKVWNAETGECIH   91 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEE---ETT--TC---CEEEECCCCSSCEEEEEEET-T--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEECCCEEEEEeCCCeEEEE---ECC--CC---CEEEEEeCCCCCEEEEEeCC-C--ccccceeccccccccccccccee
Confidence            45544 48899999999999   221  11   12233457999999999987 3  89999999999999988765433


Q ss_pred             cccCcCCCCC------------CCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCcee
Q 046899          121 AVLGAADSHP------------DLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARG  188 (407)
Q Consensus       121 ~~~~~~~~~~------------~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~  188 (407)
                      ..........            ..|+.+.+|+..........................++.++.++.+++||....+.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  171 (342)
T d2ovrb2          92 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH  171 (342)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred             cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeE
Confidence            2222211110            1188899999887754433333322222333344567889999999999999999999


Q ss_pred             eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEe
Q 046899          189 KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFD  268 (407)
Q Consensus       189 ~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  268 (407)
                      .+.+|...+.++.++  + .++++|+.||.|++||++.++  .......|...+.++++++   ++|++|+.||.|++||
T Consensus       172 ~~~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd  243 (342)
T d2ovrb2         172 TLQGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWD  243 (342)
T ss_dssp             EECCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEE
T ss_pred             EEcCcccccccccCC--C-CEEEEEeCCCeEEEeecccce--eeeEecccccceeEEecCC---CEEEEEcCCCEEEEEe
Confidence            999998888777764  4 689999999999999999888  6788889999999988865   6999999999999999


Q ss_pred             CCCCCCCCCCCceeeecC---CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc-----cCCCcccCCCCc
Q 046899          269 RRKLTSDGVGSPIHKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG-----ELKYPIIHPAYS  340 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~s  340 (407)
                      +..      .+....+..   |...+.++.++++   ++++|+.||+|++||+++++.++.+.     +|..+|++++|+
T Consensus       244 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s  314 (342)
T d2ovrb2         244 IKT------GQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS  314 (342)
T ss_dssp             TTT------CCEEEEECSTTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred             ccc------ccccccccccceeeeceeecccCCC---eeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence            998      666666654   6677888888654   45799999999999999988877653     466789999999


Q ss_pred             CcchhccccceeeeeEeeCccceeeeEEEee----eEEEeecc
Q 046899          341 SDMLDIETKLLTSIGMHLIHGRLLVCLTMVK----VLEIWRMI  379 (407)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~----~i~iwd~~  379 (407)
                      |+                  +..+++|+.||    .|++||++
T Consensus       315 ~~------------------~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         315 NT------------------KLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             SS------------------EEEEEEECSSSSSCCEEEEEECC
T ss_pred             CC------------------CCEEEEEeCCCCCeeEEEEEeCC
Confidence            88                  78899999888    49999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-32  Score=245.29  Aligned_cols=262  Identities=14%  Similarity=0.211  Sum_probs=190.1

Q ss_pred             eEEEeeCC-CceEEEEEeCC-CCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccc-cccccccCC
Q 046899           76 KFKTIIHP-GEVNRIRELPQ-NSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQD-HVSALAAEP  152 (407)
Q Consensus        76 ~~~~~~h~-~~v~~l~~~~~-~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~-~~~~~~~~~  152 (407)
                      .....+|. ..|++++|+|. ++++||+|+.||+|+|||+........+..+..         ..+.... ....+...+
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~---------~~~~~~~~~v~~v~~s~  125 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK---------SEFQVLAGPISDISWDF  125 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEE---------EEEECCSSCEEEEEECT
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccc---------cccccccCcEEEEEECC
Confidence            34445774 67999999983 678999999999999999987655443322110         0011110 011111111


Q ss_pred             CCCcccccCCCCCcccc--ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 046899          153 GSAKSTASGGANSKNAS--KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP  230 (407)
Q Consensus       153 ~~~~~~~~~~~~~~~~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  230 (407)
                      .          ...+++  .+.++.+.+|+..+++.+..+.+|...|++++|+|+++.++++++.|+.|++||....+..
T Consensus       126 ~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~  195 (325)
T d1pgua1         126 E----------GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS  195 (325)
T ss_dssp             T----------SSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE
T ss_pred             C----------CCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccc
Confidence            1          122332  2346677888888999999999999999999999998667889999999999999876521


Q ss_pred             -ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEc---CCCCCEEEE
Q 046899          231 -AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWS---PDKSSVFGS  306 (407)
Q Consensus       231 -~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~ll~s  306 (407)
                       .......|...|.+++|+|+.+.+|++|+.||.|++||+++      ++.+.++.+|..++.++.|+   |++++| ++
T Consensus       196 ~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~------~~~~~~l~~~~~~v~~~~~s~~~~dg~~l-~s  268 (325)
T d1pgua1         196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS------GEFLKYIEDDQEPVQGGIFALSWLDSQKF-AT  268 (325)
T ss_dssp             EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT------CCEEEECCBTTBCCCSCEEEEEESSSSEE-EE
T ss_pred             eecccccCCCCccEEeeeccccceeccccccccceeeeeecc------ccccccccccccccccceeeeeccCCCEE-EE
Confidence             12223467788999999995578999999999999999998      89999999888877666665   677755 69


Q ss_pred             eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          307 SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       307 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      ++.|++|+|||+++++.+..+..+...+.....   .           +... .+..|++++.||+|+|||+
T Consensus       269 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~-~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV---G-----------VVAT-GNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCGGGCEE---E-----------EEEE-ETTEEEEEETTSCEEEEET
T ss_pred             EeCCCeEEEEECCCCCEEEEEEecCCcccCeEE---E-----------EEEC-CCCEEEEEECCCEEEEEEC
Confidence            999999999999998888877665554322111   0           1111 2457999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-32  Score=245.91  Aligned_cols=288  Identities=17%  Similarity=0.189  Sum_probs=214.8

Q ss_pred             eEEEeeCCCce-EEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-------------CCcEEEEec
Q 046899           76 KFKTIIHPGEV-NRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-------------DQSVVLWSI  141 (407)
Q Consensus        76 ~~~~~~h~~~v-~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------d~~i~~w~~  141 (407)
                      ...+.||.+.| +|++|   ++++||||+.||+|+|||+.+++.+..+.+|...+.++             |+++++|+.
T Consensus         5 ~~tL~GH~~~vitc~~~---~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE---ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE---CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccc
Confidence            34456999886 66665   46799999999999999999998888888887655433             899999999


Q ss_pred             cccccccccCCCCC----cccccCCCCCccccccCCCCCCCCCCCCcCceeeE-----------------------eecc
Q 046899          142 QDHVSALAAEPGSA----KSTASGGANSKNASKSGGNGDKPLESPSIGARGKY-----------------------LGHE  194 (407)
Q Consensus       142 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-----------------------~~~~  194 (407)
                      ..............    ...........+++++.++.+++||+.........                       ..|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            87644332222211    11122233345788899999999998765543222                       1233


Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~  274 (407)
                      ..+.+.  .+++ ++++++..|+.|++||+++++  .......+...+.++.++| ++.++++++.|+.|++||+++   
T Consensus       162 ~~v~~~--~~~~-~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~---  232 (355)
T d1nexb2         162 ASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN---  232 (355)
T ss_dssp             SCEEEE--EEET-TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT---
T ss_pred             cccccc--cccc-ceeeeecccceeeeeeccccc--ceeeeeccccccccccccc-cceeeecccccceEEeeeccc---
Confidence            333333  3445 789999999999999999887  5677778889999999999 899999999999999999998   


Q ss_pred             CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeee
Q 046899          275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSI  354 (407)
Q Consensus       275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~  354 (407)
                         +.++..+.+|...|.+++|++  + .|++|+.||+|++||+++....  +..|...+..+.+.++            
T Consensus       233 ---~~~~~~~~~h~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~------------  292 (355)
T d1nexb2         233 ---GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYV------------  292 (355)
T ss_dssp             ---CCEEEEECCCSSCCCEEEECS--S-EEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEE------------
T ss_pred             ---ccccccccccccccccccccc--c-eeeeeeccccccccccccccee--cccccCCceEEEEEcC------------
Confidence               899999999999999999975  3 4579999999999999976543  4455566656554222            


Q ss_pred             eEeeCccceeeeEEEeeeEEEeeccccccCChHHHHH-HHhhcccceeEeeccC
Q 046899          355 GMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLA-ELDKFKSHIFGCDKSC  407 (407)
Q Consensus       355 ~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~  407 (407)
                            ++.+++++.|++|+|||+.      +++++. .+.+|.+.|++|+|++
T Consensus       293 ------~~~~l~~g~d~~i~vwd~~------tg~~~~~~~~~~~~~V~~v~~~~  334 (355)
T d1nexb2         293 ------SDNILVSGSENQFNIYNLR------SGKLVHANILKDADQIWSVNFKG  334 (355)
T ss_dssp             ------CSSEEEEEETTEEEEEETT------TCCBCCSCTTTTCSEEEEEEEET
T ss_pred             ------CCCEEEEEeCCEEEEEECC------CCCEEEEEecCCCCCEEEEEEcC
Confidence                  3345555569999999998      677764 5789999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=241.62  Aligned_cols=291  Identities=14%  Similarity=0.169  Sum_probs=212.6

Q ss_pred             EEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc
Q 046899           43 RWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA  121 (407)
Q Consensus        43 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~  121 (407)
                      .+.+ .+++++.|+.+++|-   ..  .   ......+.+|.++|++|+|+| + ++|++|+.||+|++|+.........
T Consensus        20 ~~~~~~l~tgs~Dg~i~vWd---~~--~---~~~~~~l~~H~~~V~~l~~s~-~-~~l~s~s~D~~i~iw~~~~~~~~~~   89 (355)
T d1nexb2          20 QFEDNYVITGADDKMIRVYD---SI--N---KKFLLQLSGHDGGVWALKYAH-G-GILVSGSTDRTVRVWDIKKGCCTHV   89 (355)
T ss_dssp             EEETTEEEEEETTTEEEEEE---TT--T---TEEEEEEECCSSCEEEEEEET-T-TEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EECCCEEEEEeCCCeEEEEE---CC--C---CcEEEEEECCCCCEEEEEEcC-C-CEEEEEecccccccccccccccccc
Confidence            4444 588999999999992   21  1   122344558999999999987 4 4799999999999999987654432


Q ss_pred             ccCcCCCC--------C--------CCCCcEEEEeccccccccccCCC------------CC-----------cccccCC
Q 046899          122 VLGAADSH--------P--------DLDQSVVLWSIQDHVSALAAEPG------------SA-----------KSTASGG  162 (407)
Q Consensus       122 ~~~~~~~~--------~--------~~d~~i~~w~~~~~~~~~~~~~~------------~~-----------~~~~~~~  162 (407)
                      ........        +        ..|+.+++|++............            ..           .......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  169 (355)
T d1nexb2          90 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG  169 (355)
T ss_dssp             ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE
T ss_pred             cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc
Confidence            22211110        0        11899999998865321111000            00           0001111


Q ss_pred             CCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcce
Q 046899          163 ANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADI  242 (407)
Q Consensus       163 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  242 (407)
                      ....++.+..++.+++||..+++.+....++...+.++.|+|.+ .++++++.|+.|++||++++.  ....+.+|...|
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~v  246 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGE--LMYTLQGHTALV  246 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCC--EEEEECCCSSCC
T ss_pred             ccceeeeecccceeeeeecccccceeeeeccccccccccccccc-eeeecccccceEEeeeccccc--cccccccccccc
Confidence            22456778899999999999999999998999999999999998 789999999999999999888  678888999999


Q ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEE-EcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          243 HCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQ-WSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       243 ~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~-~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      .++++++   ++|++|+.||.|++||+++      ...  .+..|...+.++. +++++. ++++| .|++|++||++++
T Consensus       247 ~~~~~~~---~~l~~~~~dg~i~iwd~~~------~~~--~~~~~~~~~~~~~~~~~~~~-~l~~g-~d~~i~vwd~~tg  313 (355)
T d1nexb2         247 GLLRLSD---KFLVSAAADGSIRGWDAND------YSR--KFSYHHTNLSAITTFYVSDN-ILVSG-SENQFNIYNLRSG  313 (355)
T ss_dssp             CEEEECS---SEEEEECTTSEEEEEETTT------CCE--EEEEECTTCCCCCEEEECSS-EEEEE-ETTEEEEEETTTC
T ss_pred             ccccccc---ceeeeeecccccccccccc------cce--ecccccCCceEEEEEcCCCC-EEEEE-eCCEEEEEECCCC
Confidence            9999965   6899999999999999987      443  3444666666665 455555 65555 5999999999998


Q ss_pred             Cccc-ccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeec
Q 046899          322 GEKQ-DYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRM  378 (407)
Q Consensus       322 ~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~  378 (407)
                      +.+. .+.+|..+|++++|+++                   ..+++++.||+++||.+
T Consensus       314 ~~~~~~~~~~~~~V~~v~~~~~-------------------~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         314 KLVHANILKDADQIWSVNFKGK-------------------TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CBCCSCTTTTCSEEEEEEEETT-------------------EEEEEEESSSCEEEEEE
T ss_pred             CEEEEEecCCCCCEEEEEEcCC-------------------eEEEEEECCCcEEEEEE
Confidence            8875 46778888888888665                   35778899998766654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.6e-31  Score=236.73  Aligned_cols=289  Identities=14%  Similarity=0.178  Sum_probs=217.6

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------------CCcEEEEecccc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------------DQSVVLWSIQDH  144 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------d~~i~~w~~~~~  144 (407)
                      ..+.||.+.|.+ ++++ ++++||||+.||+|+|||+.+++.+..+.+|...+.+.            |+.+++|+....
T Consensus        10 ~~l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~   87 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG   87 (342)
T ss_dssp             EEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             EEECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccc
Confidence            345599999865 2455 67899999999999999999999888888877654332            899999998876


Q ss_pred             ccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 046899          145 VSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDA  224 (407)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  224 (407)
                      .........................+..++.+.+|+..+++....+..+........  +.. ..+++++.|+.|++||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          88 ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ--YDG-RRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE--ECS-SCEEEEETTSCEEEEEG
T ss_pred             cceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeec--ccc-ceeeeecCCCeEEEeec
Confidence            544433333322222222234556678889999999998888777765555444433  333 57889999999999999


Q ss_pred             CCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899          225 RSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF  304 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll  304 (407)
                      +...  ....+.+|...+..+.+   ++.++++|+.||.|++||++.      ++++..+.+|...+.+++++++   +|
T Consensus       165 ~~~~--~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~---~l  230 (342)
T d2ovrb2         165 ETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQSLTSGMELKDN---IL  230 (342)
T ss_dssp             GGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT------CCEEEEECCCCSCEEEEEEETT---EE
T ss_pred             ccce--eeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeeccc------ceeeeEecccccceeEEecCCC---EE
Confidence            9877  67777888877766655   568999999999999999998      8899999999999999988764   45


Q ss_pred             EEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccC
Q 046899          305 GSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYR  384 (407)
Q Consensus       305 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~  384 (407)
                      ++++.|+.|++||+...+....+..+......+                 .....++..+++++.||+|+|||+.     
T Consensus       231 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~s~s~Dg~i~iwd~~-----  288 (342)
T d2ovrb2         231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV-----------------TCLQFNKNFVITSSDDGTVKLWDLK-----  288 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCE-----------------EEEEECSSEEEEEETTSEEEEEETT-----
T ss_pred             EEEcCCCEEEEEecccccccccccccceeeece-----------------eecccCCCeeEEEcCCCEEEEEECC-----
Confidence            799999999999999887766665433321111                 1112235688999999999999998     


Q ss_pred             ChHHHHHHH-----hhcccceeEeeccC
Q 046899          385 PEEEVLAEL-----DKFKSHIFGCDKSC  407 (407)
Q Consensus       385 ~~~~~~~~~-----~~h~~~v~~~~~s~  407 (407)
                       ++++++.+     .+|.+.|++++||+
T Consensus       289 -tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         289 -TGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             -TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             -CCCEEEEEecccCCCCCCCEEEEEECC
Confidence             66666554     47888999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.4e-30  Score=233.94  Aligned_cols=316  Identities=12%  Similarity=0.121  Sum_probs=207.4

Q ss_pred             cCCCeeEEEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEe------CCCCeEEEEeeCCCc
Q 046899           35 LVWPSLSCRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIREL------PQNSKIVATHTDSPD  107 (407)
Q Consensus        35 ~~~p~~s~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~~~~~~l~tg~~dg~  107 (407)
                      +.-+..++.+.+ .+++++.|+.+++|-..  ..+...|.........|...+..+...      +.+..++++++.||.
T Consensus        13 H~~~I~~v~~~~~~l~S~S~D~~iriWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~   90 (393)
T d1sq9a_          13 HDADIFSVSACNSFTVSCSGDGYLKVWDNK--LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD   90 (393)
T ss_dssp             SSSCEEEEEECSSEEEEEETTSEEEEEESB--CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred             ccCccEEEEEeCCEEEEEECCCeEEEEECC--CCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCc
Confidence            344555555555 58899999999999432  112233444455555677665444322      223468889999999


Q ss_pred             EEEEeCcCCCCcccccCcCCCCCCC---CCc--EEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCC
Q 046899          108 VLIWDVEAQPNRHAVLGAADSHPDL---DQS--VVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESP  182 (407)
Q Consensus       108 i~vwd~~~~~~~~~~~~~~~~~~~~---d~~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~  182 (407)
                      |++|++...........+.......   .+.  ...|....                .......+++++.++.+++|++.
T Consensus        91 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~dg~i~vw~~~  154 (393)
T d1sq9a_          91 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN----------------DRLLSHRLVATDVKGTTYIWKFH  154 (393)
T ss_dssp             EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--------------------CEEEEEEETTSCEEEEEEE
T ss_pred             EEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCC----------------CcccccEEEEEcCCCcEEEEEee
Confidence            9999987665443322211110000   000  00111100                01112334556667777777653


Q ss_pred             CcC------------------ceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC----ceeeecccCc
Q 046899          183 SIG------------------ARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP----AVKVEKAHNA  240 (407)
Q Consensus       183 ~~~------------------~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~  240 (407)
                      ...                  .......+...+++++|+|++  +|++|+.||+|++||+++++..    ....+.+|..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~  232 (393)
T d1sq9a_         155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  232 (393)
T ss_dssp             SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             cCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence            211                  011111345568899999987  7999999999999999987621    1223457899


Q ss_pred             ceEEEEecCCCCCEEEEEeCCCc---EEEEeCCCCCCCCCCCceeee-------------cCCCCCEEEEEEcCCCCCEE
Q 046899          241 DIHCVDWNPHDVNLILTGSADNS---IHMFDRRKLTSDGVGSPIHKF-------------EGHSAAVLCVQWSPDKSSVF  304 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~dg~---i~vwd~~~~~~~~~~~~~~~~-------------~~h~~~v~~v~~~~~~~~ll  304 (407)
                      +|++++|+| ++++|++|+.|+.   |++||+++      ++++.++             .+|...|++++|+|++++| 
T Consensus       233 ~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~------g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l-  304 (393)
T d1sq9a_         233 SIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-  304 (393)
T ss_dssp             CEEEEEECS-STTEEEEEEEETTEEEEEEEETTT------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE-
T ss_pred             eEEEccccc-ccceeeeecCCCCcceeeeccccc------ceeeeeeccccccccceeeeecccCceeeeccCCCCCee-
Confidence            999999999 9999999999874   99999998      6666655             3799999999999999955 


Q ss_pred             EEeeCCCeEEEEeCCCCCcccccccCCCccc----CCCCcCcchhccccceeeeeEe-e--------CccceeeeEEEee
Q 046899          305 GSSAEDGILNIWDHEKIGEKQDYGELKYPII----HPAYSSDMLDIETKLLTSIGMH-L--------IHGRLLVCLTMVK  371 (407)
Q Consensus       305 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~----~~~~s~d~~~~~~~~~~~~~~~-~--------~~~~~i~~~~~d~  371 (407)
                      +||+.|++|++||+++++++.++.+|..+|.    .++|+++...+.++.+..+... .        .....+++.+.|+
T Consensus       305 ~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  384 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  384 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             EEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCC
Confidence            7999999999999999999999999988876    4788887544444444332222 1        1234577888888


Q ss_pred             eEEEeec
Q 046899          372 VLEIWRM  378 (407)
Q Consensus       372 ~i~iwd~  378 (407)
                      .||+|..
T Consensus       385 ~ir~~~~  391 (393)
T d1sq9a_         385 SIRWFRE  391 (393)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEeC
Confidence            9998874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-31  Score=245.80  Aligned_cols=272  Identities=11%  Similarity=0.103  Sum_probs=190.6

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcC-CCC-CCCCCcEEEEeccccccccccCCCCCcc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAA-DSH-PDLDQSVVLWSIQDHVSALAAEPGSAKS  157 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~-~~~d~~i~~w~~~~~~~~~~~~~~~~~~  157 (407)
                      .+|.+.|.+|++++   ++|+||+.|++|+|||..+........... ... ...-..+..+...               
T Consensus        11 ~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------   72 (393)
T d1sq9a_          11 KAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI---------------   72 (393)
T ss_dssp             SCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEE---------------
T ss_pred             CcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeee---------------
Confidence            37999999999754   589999999999999987654322111000 000 0000001111100               


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCcCceeeEe----------ecccCEEEEEECCCC----CcEEEEEeCCCcEEEEE
Q 046899          158 TASGGANSKNASKSGGNGDKPLESPSIGARGKYL----------GHEDTVEDVQFCPSS----AQEFCSVGDDSCLILWD  223 (407)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~----------~~~~~v~~l~~~~~~----~~~l~s~~~dg~i~iwd  223 (407)
                      ...+.....+++++.|+.+++|+.........+.          .+...+..++|.++.    ..++++++.||.+++||
T Consensus        73 ~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~  152 (393)
T d1sq9a_          73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  152 (393)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             ccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence            0011111234567778888888765443322221          244567788887653    26799999999999999


Q ss_pred             cCCCCCC----------------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceee----
Q 046899          224 ARSGSTP----------------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHK----  283 (407)
Q Consensus       224 ~~~~~~~----------------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~----  283 (407)
                      +......                .......+...+++++|+| ++ +|++|+.||.|++||+++      ++++..    
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~------~~~~~~~~~~  224 (393)
T d1sq9a_         153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELST------LRPLYNFESQ  224 (393)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTT------TEEEEEEECC
T ss_pred             eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecc------cccccccccc
Confidence            8643210                0111224456689999999 65 899999999999999998      666554    


Q ss_pred             --ecCCCCCEEEEEEcCCCCCEEEEeeCCC---eEEEEeCCCCCccccc-------------ccCCCcccCCCCcCcchh
Q 046899          284 --FEGHSAAVLCVQWSPDKSSVFGSSAEDG---ILNIWDHEKIGEKQDY-------------GELKYPIIHPAYSSDMLD  345 (407)
Q Consensus       284 --~~~h~~~v~~v~~~~~~~~ll~s~~~d~---~i~vwd~~~~~~~~~~-------------~~~~~~v~~~~~s~d~~~  345 (407)
                        +.+|..+|++++|+|+|++| ++|+.|+   .|++||+++++.+..+             .+|...|++++|+||   
T Consensus       225 ~~l~~h~~~V~~l~~spdg~~l-~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd---  300 (393)
T d1sq9a_         225 HSMINNSNSIRSVKFSPQGSLL-AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS---  300 (393)
T ss_dssp             C---CCCCCEEEEEECSSTTEE-EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS---
T ss_pred             cccccccceEEEccccccccee-eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCC---
Confidence              45689999999999999955 7999887   4999999987766654             378889999999998   


Q ss_pred             ccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeE
Q 046899          346 IETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFG  402 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  402 (407)
                                     +..|++++.|++|+|||+.      +++++..+.||.+.|..
T Consensus       301 ---------------~~~l~S~s~D~~v~vWd~~------~g~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         301 ---------------GETLCSAGWDGKLRFWDVK------TKERITTLNMHCDDIEI  336 (393)
T ss_dssp             ---------------SSEEEEEETTSEEEEEETT------TTEEEEEEECCGGGCSS
T ss_pred             ---------------CCeeEEECCCCEEEEEECC------CCCEEEEECCcCCcccC
Confidence                           8899999999999999998      89999999999988763

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-29  Score=220.39  Aligned_cols=257  Identities=19%  Similarity=0.286  Sum_probs=204.1

Q ss_pred             eCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC------------CCcEEEEecccccccc
Q 046899           81 IHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL------------DQSVVLWSIQDHVSAL  148 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------d~~i~~w~~~~~~~~~  148 (407)
                      +|...|+|++|   ++++||||+.||+|+|||+.++++...+.+|...+.++            |+.+++|++.......
T Consensus        13 ~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          13 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             SSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             CCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccc
Confidence            58889998764   67899999999999999999999888888887665433            8999999998875554


Q ss_pred             ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCce---eeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 046899          149 AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGAR---GKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDAR  225 (407)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  225 (407)
                      ..................++++..++.+.+|+.......   ..+..|...|.++.+.+   ..+++++.|+.|++||++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~  166 (293)
T d1p22a2          90 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTS  166 (293)
T ss_dssp             EECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT
T ss_pred             cccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCC
Confidence            444443333333444456788889999999998776543   34456888898888865   468889999999999999


Q ss_pred             CCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEE
Q 046899          226 SGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG  305 (407)
Q Consensus       226 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~  305 (407)
                      +++  ....+.++...+..+.+++   .++++++.||.|++||+++      ...+..+.+|...+..+.  +++.+ |+
T Consensus       167 ~~~--~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~v~~~~--~~~~~-l~  232 (293)
T d1p22a2         167 TCE--FVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC------GACLRVLEGHEELVRCIR--FDNKR-IV  232 (293)
T ss_dssp             TCC--EEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTT------CCEEEEECCCSSCEEEEE--CCSSE-EE
T ss_pred             CCc--EEEEEcccccccccccCCC---CeEEEecCCCEEEEEeccc------ceeeeeecccceeeeecc--ccceE-EE
Confidence            888  6778888888898888754   6899999999999999998      889999999999887654  45564 57


Q ss_pred             EeeCCCeEEEEeCCCCC---------cccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          306 SSAEDGILNIWDHEKIG---------EKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       306 s~~~d~~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                      +|+.||.|++||+....         .+..+.+|..+|++++|+                    +..|++++.|++|+||
T Consensus       233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--------------------~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--------------------EFQIVSSSHDDTILIW  292 (293)
T ss_dssp             EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--------------------SSCEEECCSSSEEEEE
T ss_pred             EEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--------------------CCEEEEEecCCEEEEe
Confidence            99999999999976432         334566788888777662                    5579999999999999


Q ss_pred             e
Q 046899          377 R  377 (407)
Q Consensus       377 d  377 (407)
                      |
T Consensus       293 D  293 (293)
T d1p22a2         293 D  293 (293)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.1e-30  Score=223.14  Aligned_cols=259  Identities=10%  Similarity=0.147  Sum_probs=182.6

Q ss_pred             EEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc-----ccCcCC-CC--CCCCCcEEEEeccccccccc
Q 046899           78 KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA-----VLGAAD-SH--PDLDQSVVLWSIQDHVSALA  149 (407)
Q Consensus        78 ~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~-----~~~~~~-~~--~~~d~~i~~w~~~~~~~~~~  149 (407)
                      .+.+|.++|++|+|+|     |+||+.||+|++||+.+......     +..... ..  ...|+++++|++......  
T Consensus         8 ~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~~~--   80 (287)
T d1pgua2           8 TISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG--   80 (287)
T ss_dssp             EECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS--
T ss_pred             EECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccccccccccccc--
Confidence            4558999999999976     89999999999999876532110     000000 00  011889999987653210  


Q ss_pred             cCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCC
Q 046899          150 AEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDD-SCLILWDARSGS  228 (407)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~  228 (407)
                      ..+   ...... .+...+....++.+.+|+...++.+..+.. ...+.+  +++++ ..+++++.+ +.+++|++....
T Consensus        81 ~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~-~~~~v~~~~~~~v~~~~~~~~~  152 (287)
T d1pgua2          81 SQP---KVASAN-NDGFTAVLTNDDDLLILQSFTGDIIKSVRL-NSPGSA--VSLSQ-NYVAVGLEEGNTIQVFKLSDLE  152 (287)
T ss_dssp             SCE---EEEEEC-SSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSCEEE--EEECS-SEEEEEETTTSCEEEEETTEEE
T ss_pred             cce---eeeeec-cCCceEEEeecccceeeeccceeeeeeccc-cceeee--eeccC-cceeeeccccceeeeeeccccc
Confidence            000   011111 112334455666778888888888777753 344444  45556 456666655 579999987655


Q ss_pred             CCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCcee-eecCCCCCEEEEEEcCCCC------
Q 046899          229 TPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIH-KFEGHSAAVLCVQWSPDKS------  301 (407)
Q Consensus       229 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~------  301 (407)
                      . .......|...+++++|+| ++.+|++|+.||.|++||+.+      ++... .+.+|..+|.+++|+|.+.      
T Consensus       153 ~-~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  224 (287)
T d1pgua2         153 V-SFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQS------REVKTSRWAFRTSKINAISWKPAEKGANEEE  224 (287)
T ss_dssp             E-EEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred             e-eeeeeeccCCceeEEEecc-Cccccccccccccccceeecc------cccccccccccccccceeeeccccccccccc
Confidence            2 2223345778899999999 899999999999999999988      55443 4678999999999998542      


Q ss_pred             ---CEEEEeeCCCeEEEEeCCCC-CcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEee
Q 046899          302 ---SVFGSSAEDGILNIWDHEKI-GEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWR  377 (407)
Q Consensus       302 ---~ll~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd  377 (407)
                         .+|++|+.|++|++||+++. +.+..+.+|..+|++++|+++                  + .+++++.|++|+||+
T Consensus       225 ~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~------------------~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         225 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP------------------S-TLVSSGADACIKRWN  285 (287)
T ss_dssp             CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET------------------T-EEEEEETTSCEEEEE
T ss_pred             CCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC------------------C-EEEEEECCCeEEEEE
Confidence               25689999999999999874 455667789999999888765                  3 588999999999999


Q ss_pred             c
Q 046899          378 M  378 (407)
Q Consensus       378 ~  378 (407)
                      +
T Consensus       286 i  286 (287)
T d1pgua2         286 V  286 (287)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=4.6e-28  Score=213.39  Aligned_cols=267  Identities=13%  Similarity=0.157  Sum_probs=185.2

Q ss_pred             ccCCCeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEE
Q 046899           34 NLVWPSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLI  110 (407)
Q Consensus        34 ~~~~p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~v  110 (407)
                      .+.-+..++.|.|+   +++++.|+.+++|-   ..  ...  .......+|.+.|++++|+| ++++ ++++.|+.+++
T Consensus        10 GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd---~~--~~~--~~~~~~~~h~~~v~~v~~~~-~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2          10 GHNKAITALSSSADGKTLFSADAEGHINSWD---IS--TGI--SNRVFPDVHATMITGIKTTS-KGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEE---TT--TCC--EEECSSCSCSSCEEEEEECT-TSCE-EEEETTTEEEE
T ss_pred             CCCCCcEEEEECCCCCEEEEEcCCCeEEEEE---CC--CCc--EEEEEcCCCCCcEEEEEeec-ccee-ecccceeeEEE
Confidence            44557778889884   88999999999992   21  111  11111126899999999999 6765 55667899999


Q ss_pred             EeCcCCCCcccc---cCcCCC------CCCC-------CCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCC
Q 046899          111 WDVEAQPNRHAV---LGAADS------HPDL-------DQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGN  174 (407)
Q Consensus       111 wd~~~~~~~~~~---~~~~~~------~~~~-------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (407)
                      |+..........   ..+...      .++.       ++.+.+|+..........  ..............+++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS--YNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS--SCEEEEEECTTSCEEEEEETTS
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccc
Confidence            998754321110   111110      1111       677888886543221111  1112222233345678899999


Q ss_pred             CCCCCCCCCcCcee-eEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC-ceeeecccCcceEEEEecCCCC
Q 046899          175 GDKPLESPSIGARG-KYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP-AVKVEKAHNADIHCVDWNPHDV  252 (407)
Q Consensus       175 ~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~  252 (407)
                      .+++||+.+.+... ....|...|++++|+|++ .+|++++.|+.|++||+.++... ....+..|...|++++|+| ++
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~  236 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DN  236 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TS
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            99999998766543 345789999999999998 89999999999999999876521 2345567899999999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC-CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          253 NLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       253 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      .+|++|+.||.|++||++...    ..++..... +...|.++.|. ++.+| +|++.|++|++||+.
T Consensus       237 ~~l~sgs~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~-~~~~l-~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         237 VRLATGSLDNSVIVWNMNKPS----DHPIIIKGAHAMSSVNSVIWL-NETTI-VSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SEEEEEETTSCEEEEETTCTT----SCCEEETTSSTTSCEEEEEEE-ETTEE-EEEETTSCEEEEECC
T ss_pred             cceEEEcCCCEEEEEECCCCC----cceEEEecCCCCCcEEEEEEC-CCCEE-EEEeCCCEEEEEecc
Confidence            999999999999999998733    233334444 44567777665 55645 699999999999984

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-28  Score=215.35  Aligned_cols=257  Identities=12%  Similarity=0.126  Sum_probs=185.7

Q ss_pred             ccCCCeeEEEEeecccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeC
Q 046899           34 NLVWPSLSCRWGPQLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDV  113 (407)
Q Consensus        34 ~~~~p~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  113 (407)
                      .+.-|..++.|.| +++++.|+++++|   +..          ....+|...|.++.+.+ + ..+++++.|++|++|++
T Consensus        11 gH~~~I~~l~~s~-l~sgs~Dg~v~~W---d~~----------~~~~~h~~~V~~~~~~~-~-~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2          11 GHNKGITALTVNP-LISGSYDGRIMEW---SSS----------SMHQDHSNLIVSLDNSK-A-QEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             CCSSCEEEEETTT-TEEEETTSCEEET---TTT----------EEECCCCSCEEEEECCS-T-TCCEEEETTTEEEETTE
T ss_pred             CCCCceEEEEECc-EEEEeCCCeEEEE---ECC----------CCCCCCCCCEEEEEecC-C-CeEEEEeeccccccccc
Confidence            3455778888887 8999999999999   111          12247999999999876 4 46889999999999998


Q ss_pred             cCCCCcccccC---cCC---CCCCCCCcEEEEeccccccccc--cCCCCCcccccCCCCCccccccCC-CCCCCCCCCCc
Q 046899          114 EAQPNRHAVLG---AAD---SHPDLDQSVVLWSIQDHVSALA--AEPGSAKSTASGGANSKNASKSGG-NGDKPLESPSI  184 (407)
Q Consensus       114 ~~~~~~~~~~~---~~~---~~~~~d~~i~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~  184 (407)
                      ...+.......   +..   .....++.+.+|+.........  .......+.+.+   ..++.++.+ +.+++|+....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~v~~~~~~~~  151 (287)
T d1pgua2          75 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQ---NYVAVGLEEGNTIQVFKLSDL  151 (287)
T ss_dssp             EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECS---SEEEEEETTTSCEEEEETTEE
T ss_pred             cccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccC---cceeeeccccceeeeeecccc
Confidence            76432211111   000   0001156677787766533222  222222222222   234444444 57899998766


Q ss_pred             CceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCC---------CCCE
Q 046899          185 GARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPH---------DVNL  254 (407)
Q Consensus       185 ~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~---------~~~~  254 (407)
                      +....+. .|...+++++|+|++ .+|++|+.||.|++||+.++.. ....+..|...|.+++|+|.         ++.+
T Consensus       152 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~  229 (287)
T d1pgua2         152 EVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREV-KTSRWAFRTSKINAISWKPAEKGANEEEIEEDL  229 (287)
T ss_dssp             EEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-EECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred             ceeeeeeeccCCceeEEEeccCc-cccccccccccccceeeccccc-ccccccccccccceeeecccccccccccCCCCe
Confidence            6554443 477899999999999 8999999999999999988762 23346789999999999872         4578


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeC
Q 046899          255 ILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       255 l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~  318 (407)
                      |++|+.|+.|++||++..     .+.+..+.+|...|++++|+|++. + +|++.|++|++||+
T Consensus       230 l~sgs~D~~i~iw~~~~~-----~~~~~~~~~h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW~i  286 (287)
T d1pgua2         230 VATGSLDTNIFIYSVKRP-----MKIIKALNAHKDGVNNLLWETPST-L-VSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEESSCT-----TCCEEETTSSTTCEEEEEEEETTE-E-EEEETTSCEEEEEE
T ss_pred             eEeecCCCeEEEEECCCC-----CeEEEEeCCCCCCeEEEEECCCCE-E-EEEECCCeEEEEEE
Confidence            999999999999999763     467778889999999999999875 5 69999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.9e-28  Score=216.19  Aligned_cols=263  Identities=12%  Similarity=0.099  Sum_probs=191.9

Q ss_pred             CCceEEEEEeCCCCeEEEEeeCCC-cEEEEeCcCCCC--cccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccc
Q 046899           83 PGEVNRIRELPQNSKIVATHTDSP-DVLIWDVEAQPN--RHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTA  159 (407)
Q Consensus        83 ~~~v~~l~~~~~~~~~l~tg~~dg-~i~vwd~~~~~~--~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  159 (407)
                      .+.+++++|+| +++.||.++.+. .|+.|+......  ...+.+|...      .+         ..+.++|.      
T Consensus        17 ~~~~t~l~~~~-~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~------~v---------~~v~fsP~------   74 (325)
T d1pgua1          17 RNFTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSS------VV---------TTVKFSPI------   74 (325)
T ss_dssp             TTCCCCCEEET-TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTS------CE---------EEEEECSS------
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCC------CE---------EEEEEeeC------
Confidence            34578899999 677787776543 356666544322  2222232111      00         11111110      


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcCceee--------EeecccCEEEEEECCCCCcEEEEEe--CCCcEEEEEcCCCCC
Q 046899          160 SGGANSKNASKSGGNGDKPLESPSIGARGK--------YLGHEDTVEDVQFCPSSAQEFCSVG--DDSCLILWDARSGST  229 (407)
Q Consensus       160 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~  229 (407)
                        .....+++++.||.+++||...++....        +..|.++|.+++|++++ .++++++  .++.+++|+..+++ 
T Consensus        75 --~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~-  150 (325)
T d1pgua1          75 --KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGN-  150 (325)
T ss_dssp             --TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCC-
T ss_pred             --CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeecccc-
Confidence              1123467788999999998866554332        34578899999999999 6666655  36789999999887 


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee---cCCCCCEEEEEEcCCCCCEEEE
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF---EGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                       ....+.+|...|.+++|+|.+..++++++.|+.|++||.+.      .+....+   ..|...|++++|+|++..+|++
T Consensus       151 -~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~------~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s  223 (325)
T d1pgua1         151 -SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT  223 (325)
T ss_dssp             -EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             -cceeeeecccccccccccccccceEEEeecccccccccccc------cccceecccccCCCCccEEeeeccccceeccc
Confidence             67788899999999999994455688999999999999987      4544443   4577889999999986557789


Q ss_pred             eeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCCh
Q 046899          307 SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPE  386 (407)
Q Consensus       307 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~  386 (407)
                      ++.|+.|++||+++++.+..+.+|..++.++.|+..               ...+.+|++++.|++|+|||+.      +
T Consensus       224 ~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~---------------~~dg~~l~s~s~D~~i~iwd~~------~  282 (325)
T d1pgua1         224 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS---------------WLDSQKFATVGADATIRVWDVT------T  282 (325)
T ss_dssp             EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE---------------ESSSSEEEEEETTSEEEEEETT------T
T ss_pred             cccccceeeeeeccccccccccccccccccceeeee---------------ccCCCEEEEEeCCCeEEEEECC------C
Confidence            999999999999999999999999998888877522               1126789999999999999998      6


Q ss_pred             HHHHHHHhhcccc
Q 046899          387 EEVLAELDKFKSH  399 (407)
Q Consensus       387 ~~~~~~~~~h~~~  399 (407)
                      ++++..+..|...
T Consensus       283 ~~~~~~~~~~~~~  295 (325)
T d1pgua1         283 SKCVQKWTLDKQQ  295 (325)
T ss_dssp             TEEEEEEECCTTC
T ss_pred             CCEEEEEEecCCc
Confidence            7777777666554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.1e-27  Score=207.76  Aligned_cols=305  Identities=12%  Similarity=0.065  Sum_probs=206.0

Q ss_pred             CeeEEEEeec---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCc
Q 046899           38 PSLSCRWGPQ---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE  114 (407)
Q Consensus        38 p~~s~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~  114 (407)
                      ...+++|.|+   +++++.|+++|+|     +.+............+|.++|.+++|+|.++.+|++|+.||.|++|++.
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iw-----d~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVY-----KFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEE-----EEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEE-----EccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            3556788874   8899999999999     2223334445556668999999999999778899999999999999998


Q ss_pred             CCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEee--
Q 046899          115 AQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLG--  192 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--  192 (407)
                      ..........+....    .....+..                     ....+++++.++.+++||............  
T Consensus        88 ~~~~~~~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~  142 (342)
T d1yfqa_          88 GSPSFQALTNNEANL----GICRICKY---------------------GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             SSSSEEECBSCCCCS----CEEEEEEE---------------------TTTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             ccccccccccccccc----cccccccc---------------------ccccccccccccccceeeccccccceeeeccc
Confidence            776554443322211    11111111                     112345566677777777654443333221  


Q ss_pred             ----cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCc-eeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEE
Q 046899          193 ----HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPA-VKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF  267 (407)
Q Consensus       193 ----~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  267 (407)
                          .......+.+.+.+ ..+++++.|+.|++||++...... ......+...+.+..+.+.++..+++++.||.+.+|
T Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         143 NSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             CSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             ccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence                12233455566666 789999999999999998776322 223334555667777776688899999999999999


Q ss_pred             eCCCCCCCCCCCce---------eeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCC
Q 046899          268 DRRKLTSDGVGSPI---------HKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPA  338 (407)
Q Consensus       268 d~~~~~~~~~~~~~---------~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  338 (407)
                      +.............         .....|...|++++|+|++.+| |||+.||.|++||+++.+.+..+..+. ++..++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-asg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~  299 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL-YTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVK  299 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE-EEEETTSCEEEEETTTTEEEEECCCCS-SSEEEE
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEE-EEECCCCEEEEEECCCCcEEEEecCCC-CCEEEE
Confidence            98753321111111         1123467789999999999965 799999999999999988887775432 223345


Q ss_pred             CcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEe
Q 046899          339 YSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGC  403 (407)
Q Consensus       339 ~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~  403 (407)
                      |+++                  +..+++++.|.++++|....          ..+..|...|+.+
T Consensus       300 ~s~~------------------~~~l~~a~sdd~~~~~~~~~----------~~~~~~~~~i~~~  336 (342)
T d1yfqa_         300 IACS------------------DNILCLATSDDTFKTNAAID----------QTIELNASSIYII  336 (342)
T ss_dssp             EEEC------------------SSEEEEEEECTHHHHCSSSC----------TTSCCCCCEEEEE
T ss_pred             EEeC------------------CCEEEEEEcCCcEEEeeeeC----------CCccCCCCeEEEE
Confidence            5555                  77888888999999987652          2455566666544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.3e-26  Score=198.17  Aligned_cols=252  Identities=19%  Similarity=0.301  Sum_probs=184.1

Q ss_pred             EEEee-cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcc
Q 046899           42 CRWGP-QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRH  120 (407)
Q Consensus        42 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~  120 (407)
                      ++|.+ .+++++.|+.+++|-   ..  . .  .....+.+|.+.|++|+|   ++++|+||+.||.|++|++..+....
T Consensus        21 ~~~d~~~l~sgs~Dg~i~vWd---~~--~-~--~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          21 LQYDDQKIVSGLRDNTIKIWD---KN--T-L--ECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             EECCSSEEEEEESSSCEEEEE---SS--S-C--CEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             EEEcCCEEEEEeCCCeEEEEE---CC--C-C--cEEEEEecCCCCEeeeec---ccceeecccccccccccccccccccc
Confidence            34433 588999999999992   21  1 1  122334579999999986   56799999999999999998876543


Q ss_pred             cccCcCCCCC------------CCCCcEEEEeccccccc-----cccCCCCCcccccCCCCCccccccCCCCCCCCCCCC
Q 046899          121 AVLGAADSHP------------DLDQSVVLWSIQDHVSA-----LAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPS  183 (407)
Q Consensus       121 ~~~~~~~~~~------------~~d~~i~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~  183 (407)
                      ..........            ..++.+.+|+.......     ...+...+...  ........+++.|+.+++||..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~s~d~~i~~~d~~~  167 (293)
T d1p22a2          90 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGDRTIKVWNTST  167 (293)
T ss_dssp             EECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE--EEETTEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccccceeecccccceeEeeccccccccccccccccccccccc--eecccccccccCCCceeeecCCC
Confidence            3322211110            01788999998765321     11122221111  11223466788999999999999


Q ss_pred             cCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc
Q 046899          184 IGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS  263 (407)
Q Consensus       184 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~  263 (407)
                      ++.+..+.++...+..+.+++   ..+++++.||.|++||+++..  .......+...+.++.  + ++.+|++|+.||.
T Consensus       168 ~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~  239 (293)
T d1p22a2         168 CEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIR--F-DNKRIVSGAYDGK  239 (293)
T ss_dssp             CCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEE--C-CSSEEEEEETTSC
T ss_pred             CcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce--eeeeecccceeeeecc--c-cceEEEEEcCCCE
Confidence            999999999999999988864   579999999999999999887  6777778888887654  4 6689999999999


Q ss_pred             EEEEeCCCCCC---CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEe
Q 046899          264 IHMFDRRKLTS---DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWD  317 (407)
Q Consensus       264 i~vwd~~~~~~---~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd  317 (407)
                      |++||++....   .....++..+.+|.+.|++++|+  +.+| +||+.||+|++||
T Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l-~s~s~Dg~i~iWD  293 (293)
T d1p22a2         240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQI-VSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCE-EECCSSSEEEEEC
T ss_pred             EEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEE-EEEecCCEEEEeC
Confidence            99999753211   11145678899999999999995  4445 7999999999998

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.4e-26  Score=203.69  Aligned_cols=272  Identities=10%  Similarity=0.115  Sum_probs=186.5

Q ss_pred             eeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccccc---CcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           80 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL---GAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        80 ~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      -+|++.|++|+|+| ++++||||+.||+|+|||+.+......+.   +|...       |         ..+.+      
T Consensus         8 ~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~-------V---------~~v~f------   64 (342)
T d1yfqa_           8 QAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP-------L---------LCCNF------   64 (342)
T ss_dssp             SCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSC-------E---------EEEEE------
T ss_pred             CCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCC-------E---------EEEEE------
Confidence            37999999999999 88999999999999999998765433221   12211       1         11111      


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCE-EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee-
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTV-EDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-  234 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  234 (407)
                       .+.  ....+++++.|+.+++|+............+...+ ....+.+.. ..+++++.|+.+++||++......... 
T Consensus        65 -~~~--~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~  140 (342)
T d1yfqa_          65 -IDN--TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             -EES--SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             -eCC--CCCEEEEcccccceeeeeccccccccccccccccccccccccccc-ccccccccccccceeeccccccceeeec
Confidence             111  12347788899999999998888777766554443 344444555 789999999999999998655321211 


Q ss_pred             -eccc--CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          235 -EKAH--NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       235 -~~~~--~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                       ...+  ......+.+.+ .+..+++++.||.|++||++....   .........+...+.+..+.+.....+++++.||
T Consensus       141 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  216 (342)
T d1yfqa_         141 NLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCED---DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             ESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTT---CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             ccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcc---cceeeeecccccceeeeEeecCCCCEEEeecCCC
Confidence             1111  22344566667 778999999999999999987332   1222333445566777777776555678999999


Q ss_pred             eEEEEeCCCCCcccc---------------cccCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEe
Q 046899          312 ILNIWDHEKIGEKQD---------------YGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIW  376 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~---------------~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iw  376 (407)
                      .+.+|++........               ...+..++++++|+|+                  +..|++|+.||+|+||
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~------------------~~~lasg~~Dg~v~vW  278 (342)
T d1yfqa_         217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------------------HKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT------------------TCCEEEEETTSCEEEE
T ss_pred             eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCC------------------ccEEEEECCCCEEEEE
Confidence            999999876433322               1234445666777777                  8899999999999999


Q ss_pred             eccccccCChHHHHHHHhh-cccceeEeecc
Q 046899          377 RMIDLIYRPEEEVLAELDK-FKSHIFGCDKS  406 (407)
Q Consensus       377 d~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s  406 (407)
                      |+.      +++++..+.. |...+.+++++
T Consensus       279 D~~------~~~~l~~~~~~~~~~~~~~s~~  303 (342)
T d1yfqa_         279 NLQ------TRKKIKNFAKFNEDSVVKIACS  303 (342)
T ss_dssp             ETT------TTEEEEECCCCSSSEEEEEEEC
T ss_pred             ECC------CCcEEEEecCCCCCEEEEEEeC
Confidence            998      6666666653 55556665553

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=8.4e-22  Score=177.06  Aligned_cols=263  Identities=11%  Similarity=0.048  Sum_probs=181.5

Q ss_pred             EEEee-c---ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCC--cEEEEeCcC
Q 046899           42 CRWGP-Q---LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSP--DVLIWDVEA  115 (407)
Q Consensus        42 ~~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg--~i~vwd~~~  115 (407)
                      -+|.| +   ++++ ..+.+.+|     +.+.    . ....++|.+.|.+++|+| ++++|++++.+.  .|++||..+
T Consensus         8 ~~fSP~dG~~~a~~-~~g~v~v~-----d~~~----~-~~~~~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~   75 (360)
T d1k32a3           8 EDFSPLDGDLIAFV-SRGQAFIQ-----DVSG----T-YVLKVPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRT   75 (360)
T ss_dssp             EEEEECGGGCEEEE-ETTEEEEE-----CTTS----S-BEEECSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTT
T ss_pred             ccccCCCCCEEEEE-ECCeEEEE-----ECCC----C-cEEEccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCC
Confidence            46777 3   3433 44567777     2111    1 223358999999999999 888887766543  689999876


Q ss_pred             CCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeeccc
Q 046899          116 QPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHED  195 (407)
Q Consensus       116 ~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~  195 (407)
                      ++.                                                                     ..+..|..
T Consensus        76 ~~~---------------------------------------------------------------------~~~~~~~~   86 (360)
T d1k32a3          76 GKA---------------------------------------------------------------------EKFEENLG   86 (360)
T ss_dssp             CCE---------------------------------------------------------------------EECCCCCC
T ss_pred             CcE---------------------------------------------------------------------EEeeCCCc
Confidence            431                                                                     23346788


Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE----------eCCCcEE
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG----------SADNSIH  265 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg----------~~dg~i~  265 (407)
                      .|.+++|+|++ ++|++++.++.+++|++.+++  .......|...+.+++|+| ++++|+.+          ..++.++
T Consensus        87 ~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          87 NVFAMGVDRNG-KFAVVANDRFEIMTVDLETGK--PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             SEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             eEEeeeecccc-cccceeccccccccccccccc--eeeeeecccccccchhhcc-ceeeeeeeccccccceeecccccee
Confidence            89999999999 899999999999999999888  5677778888999999999 89998854          3455699


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc-------cccccCCCcccCCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK-------QDYGELKYPIIHPA  338 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~-------~~~~~~~~~v~~~~  338 (407)
                      +||+..      + ....+..|...+..++|+|+|++| ++++.|+.+++||.......       .....+...+..+.
T Consensus       163 v~d~~~------~-~~~~~~~~~~~~~~~~~spdg~~l-~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (360)
T d1k32a3         163 VYDMEG------R-KIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK  234 (360)
T ss_dssp             EEETTT------T-EEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred             eecccc------C-ceeeecccccccccccccCCCCEE-EEEeCCCceEcccccccceeeccccceEEEecccCccccce
Confidence            999987      4 444555677889999999999976 68999999999997654322       11122233333344


Q ss_pred             CcCcch-------------------hccccceeeeeEeeCccc------------eeeeEEEeeeEEEeeccccccCChH
Q 046899          339 YSSDML-------------------DIETKLLTSIGMHLIHGR------------LLVCLTMVKVLEIWRMIDLIYRPEE  387 (407)
Q Consensus       339 ~s~d~~-------------------~~~~~~~~~~~~~~~~~~------------~i~~~~~d~~i~iwd~~~~~~~~~~  387 (407)
                      ++++..                   +...+....+..+.+|..            .+++++.++.|++||+.      ++
T Consensus       235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~------~~  308 (360)
T d1k32a3         235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK------TR  308 (360)
T ss_dssp             CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT------TC
T ss_pred             ECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECC------CC
Confidence            444411                   111222222222222221            23466778899999997      32


Q ss_pred             HHHHHHhhcccceeEeeccC
Q 046899          388 EVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       388 ~~~~~~~~h~~~v~~~~~s~  407 (407)
                          ++..|.+.|.+++||+
T Consensus       309 ----~~~~~~~~v~~~~~Sp  324 (360)
T d1k32a3         309 ----KVTEVKNNLTDLRLSA  324 (360)
T ss_dssp             ----CEEEEEEEEEEEEECT
T ss_pred             ----eEEEecCCcCEEEECC
Confidence                2456788899999986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=5.5e-22  Score=183.31  Aligned_cols=302  Identities=10%  Similarity=0.047  Sum_probs=188.9

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccc-----
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAV-----  122 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~-----  122 (407)
                      +++.+.++.+++|         +....+....+.+...+..++|+| +|++|++++.|++|++||+.+++.....     
T Consensus        35 ~V~~~~dg~v~vw---------D~~t~~~~~~l~~g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          35 SVTLRDAGQIALV---------DGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             EEEETTTTEEEEE---------ETTTCSEEEEEECCSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEcCCCEEEEE---------ECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            4678889999999         223334555555556799999999 9999999999999999999988643221     


Q ss_pred             cCc------CCCCCCC---------CCcEEEEeccccccccc--cCCC---CCcc--------cccCCCCCcc-ccccCC
Q 046899          123 LGA------ADSHPDL---------DQSVVLWSIQDHVSALA--AEPG---SAKS--------TASGGANSKN-ASKSGG  173 (407)
Q Consensus       123 ~~~------~~~~~~~---------d~~i~~w~~~~~~~~~~--~~~~---~~~~--------~~~~~~~~~~-~~~~~~  173 (407)
                      .++      ....++.         ++.+.+||.........  .+..   ...+        +........+ ......
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence            111      1222333         78899999887633211  1110   0111        1111111111 112222


Q ss_pred             CCCCCCCCCCcCc-eeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec--ccCcceEEEEecCC
Q 046899          174 NGDKPLESPSIGA-RGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK--AHNADIHCVDWNPH  250 (407)
Q Consensus       174 ~~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~~~~  250 (407)
                      +.+.+++...... .....++...+..+.|+|++..++++...+..+.++|..+++  ......  .+......+.+.+.
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  262 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR--LSALVDVGKTPHPGRGANFVHP  262 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE--EEEEEECSSCCCCSCCEEEEET
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc--EEEEeccCCcccccceeeeecC
Confidence            3333333333332 223446778899999999995555666677889999999887  333322  22222233333321


Q ss_pred             CCC--EEEEEeCCCcEEEEeCCCCCC-CCCCCceeeecCCCCCEEEEEEcCCCCCEEE------EeeCCCeEEEEeCCCC
Q 046899          251 DVN--LILTGSADNSIHMFDRRKLTS-DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFG------SSAEDGILNIWDHEKI  321 (407)
Q Consensus       251 ~~~--~l~tg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~------s~~~d~~i~vwd~~~~  321 (407)
                      ...  ..++.+.|+.+.+|+...... ...++...++.+|...+..++|+|++++|.+      +++.|++|+|||+.++
T Consensus       263 ~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             TTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             CCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCC
Confidence            222  223445678888888654211 1114678889999999999999999998753      4567899999999988


Q ss_pred             Cccccc---------ccCCCcccCCCCcCcchhccccceeeeeEeeCccceee-eE----EEeeeEEEeecc
Q 046899          322 GEKQDY---------GELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CL----TMVKVLEIWRMI  379 (407)
Q Consensus       322 ~~~~~~---------~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~----~~d~~i~iwd~~  379 (407)
                      +...++         ..+...+.+++||||                  +.+|+ ++    +.+++|+|||..
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD------------------Gk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         343 DAKYQVLPIAEWADLGEGAKRVVQPEYNKR------------------GDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             TSCCEEECHHHHHCCCSSCCCEEEEEECSS------------------SSEEEEEECCCTTSCCEEEEEETT
T ss_pred             CcCeEEeccchhcccCCCCccEEEEEECCC------------------CCEEEEEEecCCCCCCeEEEEECC
Confidence            766543         344556778889999                  66553 32    357899999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=1.3e-20  Score=169.08  Aligned_cols=158  Identities=12%  Similarity=0.067  Sum_probs=130.3

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCC--CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDD--SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                      +|...|.+++|+|+| +.|++++.+  ..|++||++++.   ...+..|...+.+++|+| ++++|++++.++.+++|++
T Consensus        40 ~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~---~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          40 PEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             SCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCC---EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             cCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCc---EEEeeCCCceEEeeeecc-cccccceeccccccccccc
Confidence            477889999999999 666665544  379999998876   556678999999999999 9999999999999999999


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE---------eeCCCeEEEEeCCCCCcccccccCCCcccCCCCc
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS---------SAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYS  340 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s---------~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  340 (407)
                      ..      ++....+..|...+.+++|+|+|++|+.+         +..++.+++||+.+.+.. ....+...+..+.|+
T Consensus       115 ~~------~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~s  187 (360)
T d1k32a3         115 ET------GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFD  187 (360)
T ss_dssp             TT------CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEEC
T ss_pred             cc------cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee-eeccccccccccccc
Confidence            98      78888888899999999999999976432         334567999999986544 344455666677888


Q ss_pred             CcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          341 SDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       341 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      ||                  +..|+.++.++.+++|+..
T Consensus       188 pd------------------g~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         188 AD------------------SKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             TT------------------SCEEEEEESCCCCCEECSS
T ss_pred             CC------------------CCEEEEEeCCCceEccccc
Confidence            87                  8889999999999999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=1.3e-19  Score=158.44  Aligned_cols=262  Identities=12%  Similarity=0.064  Sum_probs=180.3

Q ss_pred             cccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEE-EEeeCCCcEEEEeCcCCCCcccccCcCC
Q 046899           49 EQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIV-ATHTDSPDVLIWDVEAQPNRHAVLGAAD  127 (407)
Q Consensus        49 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~~~~~~~~~~~~  127 (407)
                      +++..++++.+|         +....+..+.+...+.+..++|+| ++++| ++++.++.|++||+.+++.+..+..+..
T Consensus         6 V~~~~~~~v~v~---------D~~t~~~~~~i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~   75 (301)
T d1l0qa2           6 IANSESDNISVI---------DVTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS   75 (301)
T ss_dssp             EEETTTTEEEEE---------ETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEECCCCEEEEE---------ECCCCeEEEEEECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCceeeeeecccc
Confidence            345677789999         222234556667777899999999 66655 6778899999999998877666544322


Q ss_pred             C-----CCCC---------CCcEEEEeccccccccccC-CCCCcccccCCCCC-ccccccCCCCCCCCCCCCcCceeeEe
Q 046899          128 S-----HPDL---------DQSVVLWSIQDHVSALAAE-PGSAKSTASGGANS-KNASKSGGNGDKPLESPSIGARGKYL  191 (407)
Q Consensus       128 ~-----~~~~---------d~~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~  191 (407)
                      .     .++.         +..+.+|+..+........ .............. .++....+..+.+|+..+.+.+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc
Confidence            1     1111         6678888887664322211 11112222222222 23456667778889998888877775


Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEe---CCCcEEEEe
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGS---ADNSIHMFD  268 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~---~dg~i~vwd  268 (407)
                      . ...+.+++++|++..+++++..++.+.+|+.....  ..... .....+..+++++ ++..++.++   .++.|++||
T Consensus       156 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         156 V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--VIDTV-KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE-ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEE
T ss_pred             c-CCCceEEEeeccccceeeeccccccccccccccee--eeecc-cccCCcceeeccc-cccccccccccceeeeeeeee
Confidence            4 45688999999984444444455677788776655  33333 4455678899999 777766554   346899999


Q ss_pred             CCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCC
Q 046899          269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKY  332 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  332 (407)
                      +.+      ++.+..+..+ ..+.+++|+|+|++|+++++.|++|++||+++++.+.++.....
T Consensus       231 ~~t------~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~~  287 (301)
T d1l0qa2         231 TGT------NKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN  287 (301)
T ss_dssp             TTT------TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             cCC------CeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCCC
Confidence            998      7888888754 56899999999999888999999999999999888877764433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=7.3e-19  Score=162.11  Aligned_cols=308  Identities=9%  Similarity=-0.005  Sum_probs=192.5

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCccc--ccCc
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA--VLGA  125 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~--~~~~  125 (407)
                      +++.+.++.+.+|         +....+....+.....+..++|+| +|++|++++.|+.|++||+.+++....  +...
T Consensus        35 ~v~~~d~g~v~v~---------D~~t~~v~~~~~~g~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          35 SVTLRDAGQIALI---------DGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             EEEETTTTEEEEE---------ETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             EEEEcCCCEEEEE---------ECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence            4678889999999         223333444444445799999999 999999999999999999987653321  1110


Q ss_pred             CCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeec-----------c
Q 046899          126 ADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGH-----------E  194 (407)
Q Consensus       126 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-----------~  194 (407)
                      ..      ..-.++.              ..+.++|+.  .++++..++.+++||..+++.+..+..|           .
T Consensus       105 ~~------~~~~~~s--------------~~~SpDG~~--l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~  162 (432)
T d1qksa2         105 SE------ARSIETS--------------KMEGWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE  162 (432)
T ss_dssp             SE------EEEEEEC--------------CSTTCTTTE--EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred             CC------CCCeEEe--------------cccCCCCCE--EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC
Confidence            00      0000010              011122211  2356777888999999988887776543           4


Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeCCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDRRKLT  273 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~  273 (407)
                      .....+.++|++..++++...++.|.+||..+.+...... ..+...+..+.|+| +++++++++. ++.+.++|.+.  
T Consensus       163 ~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~-i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~--  238 (432)
T d1qksa2         163 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-ISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE--  238 (432)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-EECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT--
T ss_pred             CceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEE-EcccCccccceECC-CCCEEEEeccccceEEEeeccc--
Confidence            4567889999996667788889999999998776322222 24566788999999 8887766655 56899999987  


Q ss_pred             CCCCCCceeeecC-----CCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeCCCCCcc-------cccccCCCcccCCCCc
Q 046899          274 SDGVGSPIHKFEG-----HSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDHEKIGEK-------QDYGELKYPIIHPAYS  340 (407)
Q Consensus       274 ~~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~-------~~~~~~~~~v~~~~~s  340 (407)
                          .+.+..+..     |........+...+. +.++.. .|+.|.+|+.......       .....++.....+..+
T Consensus       239 ----~~~~~~~~~g~~~~~~~~~~~~~~~~~g~-~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~  313 (432)
T d1qksa2         239 ----GKLVAIEDTGGQTPHPGRGANFVHPTFGP-VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTH  313 (432)
T ss_dssp             ----TEEEEEEECSSSSBCCTTCEEEEETTTEE-EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred             ----ceEEEEeccCccccccCcccceecCCCCc-eecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEec
Confidence                555554432     334445555555555 333333 4788888887653221       1122222222222333


Q ss_pred             Cc---chhcccc-----ceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          341 SD---MLDIETK-----LLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       341 ~d---~~~~~~~-----~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      |+   +|...+.     ...++.+  ..+..+++++.|+++++|++.      ++   ..+.+|...|.+++||+
T Consensus       314 p~~~~lw~~~~~~~~~~~~~sv~v--pDg~~la~~s~d~~~k~w~~~------~~---~~l~~~~~~v~~~~fS~  377 (432)
T d1qksa2         314 PNSQYLYVDATLNPEAEISGSVAV--FDIKAMTGDGSDPEFKTLPIA------EW---AGITEGQPRVVQGEFNK  377 (432)
T ss_dssp             TTCSEEEEECTTCSSHHHHTCEEE--EEGGGCCCSSSCCCEEEECHH------HH---HTCCSSCCEEEEEEECT
T ss_pred             CCccceeecccCCCCCCeeeEEEE--EechhhcccccCCceEecccc------cc---cccCCCCCcEEEeEECC
Confidence            32   2221111     1112232  346788899999999999986      44   34457778899999986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.78  E-value=6e-19  Score=154.06  Aligned_cols=258  Identities=12%  Similarity=0.127  Sum_probs=181.2

Q ss_pred             EEEEeeCCCcEEEEeCcCCCCcccccCcC-----CCCCCC---------CCcEEEEeccccccccc--cCCCCCcccccC
Q 046899           98 IVATHTDSPDVLIWDVEAQPNRHAVLGAA-----DSHPDL---------DQSVVLWSIQDHVSALA--AEPGSAKSTASG  161 (407)
Q Consensus        98 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~---------d~~i~~w~~~~~~~~~~--~~~~~~~~~~~~  161 (407)
                      ..++++.|++|.+||+.+++.+..+....     ...++.         ++.|.+||+.+......  .... ...+...
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~   82 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVS   82 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEEC
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccc
Confidence            35577889999999999987666554321     112222         78899999987644222  2211 1111122


Q ss_pred             CCC-CccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc
Q 046899          162 GAN-SKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA  240 (407)
Q Consensus       162 ~~~-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  240 (407)
                      ... ...+++..++.+.+|+...++....+.. .....++.|+|++..+++++..++.+.+|+..+..  ..... .+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~  158 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTV-SVGR  158 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE-ECCS
T ss_pred             cccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccc--eeeec-ccCC
Confidence            222 2345566778889999998888777764 45678999999996666777789999999998877  44444 3445


Q ss_pred             ceEEEEecCCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEee--CCCeEEEEe
Q 046899          241 DIHCVDWNPHDVNLILTGSAD-NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGILNIWD  317 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~--~d~~i~vwd  317 (407)
                      .+..+.++| ++..+++++.+ +.+.+|+...      .+....+.. ...+..++|++++..+++++.  .+++|++||
T Consensus       159 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         159 SPKGIAVTP-DGTKVYVANFDSMSISVIDTVT------NSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             SEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             CceEEEeec-cccceeeecccccccccccccc------eeeeecccc-cCCcceeeccccccccccccccceeeeeeeee
Confidence            678899999 77777666654 6777888776      555555554 456789999999998765443  357899999


Q ss_pred             CCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcccee-eeEEEeeeEEEeeccccccCChHHHHHHH
Q 046899          318 HEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL-VCLTMVKVLEIWRMIDLIYRPEEEVLAEL  393 (407)
Q Consensus       318 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  393 (407)
                      +.+++....+..+. .+.+++||||                  +.+| ++++.+++|+|||+.      ++++++++
T Consensus       231 ~~t~~~~~~~~~~~-~~~~va~spd------------------g~~l~va~~~~~~i~v~D~~------t~~~~~~~  282 (301)
T d1l0qa2         231 TGTNKITARIPVGP-DPAGIAVTPD------------------GKKVYVALSFCNTVSVIDTA------TNTITATM  282 (301)
T ss_dssp             TTTTEEEEEEECCS-SEEEEEECTT------------------SSEEEEEETTTTEEEEEETT------TTEEEEEE
T ss_pred             cCCCeEEEEEcCCC-CEEEEEEeCC------------------CCEEEEEECCCCeEEEEECC------CCeEEEEE
Confidence            99988877766543 4578999998                  7766 577788999999998      55555444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=2.2e-18  Score=158.81  Aligned_cols=196  Identities=5%  Similarity=-0.022  Sum_probs=132.7

Q ss_pred             eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCC
Q 046899           97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGD  176 (407)
Q Consensus        97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  176 (407)
                      -++++.+.||+|+|||+.+++.+..+..+..                        +..+.+.++|+   .+++++.|+.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~------------------------~~~vafSPDGk---~l~~~~~d~~v   85 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA------------------------VHISRMSASGR---YLLVIGRDARI   85 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCSS------------------------EEEEEECTTSC---EEEEEETTSEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCC------------------------eeEEEECCCCC---EEEEEeCCCCE
Confidence            3568888999999999999887776654321                        11223333443   36667788999


Q ss_pred             CCCCCCCcCceeeE-----eecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCc-----------
Q 046899          177 KPLESPSIGARGKY-----LGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNA-----------  240 (407)
Q Consensus       177 ~i~d~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------  240 (407)
                      ++||+.+++.....     .+|...+.+++|+|+|..+++++..++.+++||..++.  .......|..           
T Consensus        86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCC
T ss_pred             EEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc--eeEEeeccCCCccceeecCCC
Confidence            99999988765433     25666777888999995455666789999999999887  4444444433           


Q ss_pred             ceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          241 DIHCVDWNPHDVNLILTG-SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       241 ~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                      ....+..++ ++..++.. ...+.+.+++....     .........+...+..++|+|++++++++...+..+.+++..
T Consensus       164 ~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~  237 (426)
T d1hzua2         164 RVAAIIASH-EHPEFIVNVKETGKVLLVNYKDI-----DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK  237 (426)
T ss_dssp             CEEEEEECS-SSSEEEEEETTTTEEEEEECSSS-----SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT
T ss_pred             ceeEEEECC-CCCEEEEecCCCCeEEEEEeccc-----cceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecc
Confidence            334555666 44444433 33455666665542     122233345778899999999999988777788889999988


Q ss_pred             CCCccccc
Q 046899          320 KIGEKQDY  327 (407)
Q Consensus       320 ~~~~~~~~  327 (407)
                      +++.....
T Consensus       238 ~~~~~~~~  245 (426)
T d1hzua2         238 DRRLSALV  245 (426)
T ss_dssp             TTEEEEEE
T ss_pred             cccEEEEe
Confidence            76655443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=2.4e-17  Score=145.90  Aligned_cols=251  Identities=13%  Similarity=0.089  Sum_probs=154.4

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEE-EEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIV-ATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      +++++.|+++.+|-.     . .......+....+...+..++|+| +++++ ++++.++.|.+||+.+++.+..+..+.
T Consensus         4 ~vt~~~d~~v~v~D~-----~-s~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           4 ILAPARPDKLVVIDT-----E-KMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEETTTEEEEEET-----T-TTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             EEEEcCCCEEEEEEC-----C-CCeEEEEEECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            567888999999921     1 111122222223456688999999 77765 677889999999999987766554332


Q ss_pred             CCCCCCCCcEEEEeccccccccccCCCCCcccccC--CCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECC
Q 046899          127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASG--GANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCP  204 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~  204 (407)
                      .....           .....+...+.+.......  ...........+..+.+||..+++....+. +...+.+++|+|
T Consensus        77 ~~~~~-----------~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~  144 (337)
T d1pbyb_          77 PEERV-----------KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWAR  144 (337)
T ss_dssp             TTEEE-----------ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECT
T ss_pred             Ccccc-----------cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcC
Confidence            11000           0000011111111100000  000011123345566677777777766665 345577888888


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCCCC------------------------------------------------------
Q 046899          205 SSAQEFCSVGDDSCLILWDARSGSTP------------------------------------------------------  230 (407)
Q Consensus       205 ~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------------------------------  230 (407)
                      ++ .++++++.  .+.+||..+++..                                                      
T Consensus       145 dg-~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (337)
T d1pbyb_         145 DG-SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             TS-SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             CC-CEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccE
Confidence            88 66666654  4666776643200                                                      


Q ss_pred             ----------ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCC
Q 046899          231 ----------AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDK  300 (407)
Q Consensus       231 ----------~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~  300 (407)
                                .......+...+..+.++| ++.+++.+  ++.|++||+++      ++.+..+. +...+.+++|+|+|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~------~~~~~~~~-~~~~~~~~~~s~dG  291 (337)
T d1pbyb_         222 LTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEK------NASIKRVP-LPHSYYSVNVSTDG  291 (337)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTT------TEEEEEEE-CSSCCCEEEECTTS
T ss_pred             EEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--cccEEEEECCC------CcEEEEEc-CCCCEEEEEECCCC
Confidence                      0011122344456677777 77777655  58899999999      78888876 56678999999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCCcccccccCC
Q 046899          301 SSVFGSSAEDGILNIWDHEKIGEKQDYGELK  331 (407)
Q Consensus       301 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~  331 (407)
                      ++| ++++.|++|++||+++++.+.++.-..
T Consensus       292 ~~l-~v~~~~~~i~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         292 STV-WLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             CEE-EEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CEE-EEEeCCCcEEEEECCCCcEEEEEECCC
Confidence            977 478899999999999998887765433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=1.2e-17  Score=148.04  Aligned_cols=240  Identities=15%  Similarity=0.154  Sum_probs=164.7

Q ss_pred             eEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccccCCCCC
Q 046899           97 KIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGD  176 (407)
Q Consensus        97 ~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  176 (407)
                      ++++|++.|++|+|||+.+.+.+..+..+...                     ..+..+.+.++|+.  .+++++.++.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~---------------------~~~~~i~~spDg~~--l~v~~~~~~~v   58 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG---------------------PTPMVPMVAPGGRI--AYATVNKSESL   58 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCT---------------------TCCCCEEECTTSSE--EEEEETTTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCC---------------------CCccEEEECCCCCE--EEEEECCCCeE
Confidence            68999999999999999988766554332211                     01112223333321  23456778999


Q ss_pred             CCCCCCCcCceeeEeeccc-----CEEEEEECCCCCcEEEEEe------------CCCcEEEEEcCCCCCCceeeecccC
Q 046899          177 KPLESPSIGARGKYLGHED-----TVEDVQFCPSSAQEFCSVG------------DDSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                      .+||+.+++.+..+..+..     .+..++|+|++ ..++++.            .+..+.+||..++.  ....+ .+.
T Consensus        59 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~~~  134 (337)
T d1pbyb_          59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAF-EAP  134 (337)
T ss_dssp             EEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEE-ECC
T ss_pred             EEEECCCCcEEEEEecCCCcccccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCe--EEEec-ccc
Confidence            9999999999888765533     44578999999 5666554            46789999998877  44444 345


Q ss_pred             cceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC-----------------CCC-------------------------
Q 046899          240 ADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS-----------------DGV-------------------------  277 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-----------------~~~-------------------------  277 (407)
                      ..+.+++|+| ++.++++++.+  +.+||......                 ++.                         
T Consensus       135 ~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T d1pbyb_         135 RQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             SSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             CCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccce
Confidence            6678899999 88888888654  66788654210                 000                         


Q ss_pred             -----------------CC-ceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCC
Q 046899          278 -----------------GS-PIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAY  339 (407)
Q Consensus       278 -----------------~~-~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  339 (407)
                                       +. ....+..+...+..++++|++.+++ .+  ++.|++||+.+.+.+..+. +...+.+++|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~  287 (337)
T d1pbyb_         212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEKNASIKRVP-LPHSYYSVNV  287 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred             eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE-Ec--cccEEEEECCCCcEEEEEc-CCCCEEEEEE
Confidence                             00 0011223445667777888887543 33  6899999999988877765 3556788999


Q ss_pred             cCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh
Q 046899          340 SSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD  394 (407)
Q Consensus       340 s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  394 (407)
                      |||                  +.++++++.+++|+|||..      +.+.+..++
T Consensus       288 s~d------------------G~~l~v~~~~~~i~v~D~~------t~~~v~~i~  318 (337)
T d1pbyb_         288 STD------------------GSTVWLGGALGDLAAYDAE------TLEKKGQVD  318 (337)
T ss_dssp             CTT------------------SCEEEEESBSSEEEEEETT------TCCEEEEEE
T ss_pred             CCC------------------CCEEEEEeCCCcEEEEECC------CCcEEEEEE
Confidence            999                  8899999999999999998      555555443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=4.7e-17  Score=149.86  Aligned_cols=186  Identities=8%  Similarity=-0.010  Sum_probs=144.2

Q ss_pred             cccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee---cccCcceE
Q 046899          167 NASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE---KAHNADIH  243 (407)
Q Consensus       167 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~  243 (407)
                      +++.+.++.+.+||..+++.+..+..+ ..+..++|+|+| +++++++.|+.|++||+.+++......+   ..|.+.+.
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            467889999999999999999999876 469999999999 8899999999999999988764323222   34556667


Q ss_pred             EEEecCCCCCEE-EEEeCCCcEEEEeCCCCCCCCCCCceeeecCC-----------CCCEEEEEEcCCCCCEEEEeeCCC
Q 046899          244 CVDWNPHDVNLI-LTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH-----------SAAVLCVQWSPDKSSVFGSSAEDG  311 (407)
Q Consensus       244 ~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h-----------~~~v~~v~~~~~~~~ll~s~~~d~  311 (407)
                      +..|+| |+++| +++..++.|++||..+      ++++..+..|           ......+.++|++..++++...++
T Consensus       113 s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~  185 (432)
T d1qksa2         113 SKMEGW-EDKYAIAGAYWPPQYVIMDGET------LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  185 (432)
T ss_dssp             CCSTTC-TTTEEEEEEEETTEEEEEETTT------CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             ecccCC-CCCEEEEEcCCCCeEEEEeCcc------ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence            778889 88865 7788899999999998      7777766543           456778999999998888888999


Q ss_pred             eEEEEeCCCCCcccccc-cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEee-eEEEeecc
Q 046899          312 ILNIWDHEKIGEKQDYG-ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVK-VLEIWRMI  379 (407)
Q Consensus       312 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~i~iwd~~  379 (407)
                      .|.+||....+...... .....+.+++|+||                  +.++++++.++ .+.++|..
T Consensus       186 ~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spd------------------g~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         186 KILLVDYTDLNNLKTTEISAERFLHDGGLDGS------------------HRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTT------------------SCEEEEEEGGGTEEEEEETT
T ss_pred             eEEEEEccCCCcceEEEEcccCccccceECCC------------------CCEEEEeccccceEEEeecc
Confidence            99999998876544322 23444567778887                  66666655544 67777765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.69  E-value=1.3e-15  Score=135.07  Aligned_cols=264  Identities=11%  Similarity=0.042  Sum_probs=163.2

Q ss_pred             cccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeE-EEEeeCCCcEEEEeCcCCCCcccccCc
Q 046899           47 QLEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKI-VATHTDSPDVLIWDVEAQPNRHAVLGA  125 (407)
Q Consensus        47 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-l~tg~~dg~i~vwd~~~~~~~~~~~~~  125 (407)
                      .+++++.++.+.+|     +.+  .........++|...+.+++|+| ++++ ++++..++.|.+||+.+++....+...
T Consensus        10 ~l~~~~~~~~v~v~-----D~~--t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_          10 YMIVTNYPNNLHVV-----DVA--SDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             EEEEEETTTEEEEE-----ETT--TTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             EEEEEcCCCEEEEE-----ECC--CCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            36778888889999     111  11222222345777889999999 6665 467778999999999988655433221


Q ss_pred             CC------------CCCCC--------------------CCcEEEEeccccccc--c--ccCCCCCcccccCCCCCcccc
Q 046899          126 AD------------SHPDL--------------------DQSVVLWSIQDHVSA--L--AAEPGSAKSTASGGANSKNAS  169 (407)
Q Consensus       126 ~~------------~~~~~--------------------d~~i~~w~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~  169 (407)
                      ..            ..++.                    +..+.+|+..+....  +  ...+..............++ 
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-  160 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE-
Confidence            11            11111                    455666666554221  1  11122222222222111111 


Q ss_pred             ccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCC-------------------------cEEEEEeCCCcEEEEEc
Q 046899          170 KSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSA-------------------------QEFCSVGDDSCLILWDA  224 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-------------------------~~l~s~~~dg~i~iwd~  224 (407)
                        .++.+.+|+..+++.+..+..+. ....+.++|++.                         ..++++..++.+.+||+
T Consensus       161 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         161 --AGPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             --ESSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             --eCCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence              12446677777777766654332 223333444331                         22334445567888888


Q ss_pred             CCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEE
Q 046899          225 RSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVF  304 (407)
Q Consensus       225 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll  304 (407)
                      .++.. .......+...+..+.+++ ++.+++.+. ++.|.+||..+      ++.+..+. +...+.+++|+|||++|+
T Consensus       238 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~v~v~d~~~------~~~~~~~~-~~~~~~~va~s~DG~~l~  307 (346)
T d1jmxb_         238 KTGKT-HTQEFADLTELYFTGLRSP-KDPNQIYGV-LNRLAKYDLKQ------RKLIKAAN-LDHTYYCVAFDKKGDKLY  307 (346)
T ss_dssp             TTCCE-EEEEEEECSSCEEEEEECS-SCTTEEEEE-ESEEEEEETTT------TEEEEEEE-CSSCCCEEEECSSSSCEE
T ss_pred             CCCce-EEEEeecccceeEEEEEeC-CCCEEEEec-CCeEEEEECCC------CcEEEEEc-CCCCEEEEEEcCCCCEEE
Confidence            87763 2334456778888999999 555566554 46799999998      78887776 455789999999999875


Q ss_pred             EEeeCCCeEEEEeCCCCCcccccccCCCc
Q 046899          305 GSSAEDGILNIWDHEKIGEKQDYGELKYP  333 (407)
Q Consensus       305 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  333 (407)
                       +++.|+.|++||+++++.+.++....++
T Consensus       308 -v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         308 -LGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             -EESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             -EEeCCCcEEEEECccCCEEEEEECCCCC
Confidence             8888999999999999988877655543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=5e-17  Score=144.44  Aligned_cols=251  Identities=11%  Similarity=0.048  Sum_probs=161.3

Q ss_pred             EEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccc
Q 046899           89 IRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNA  168 (407)
Q Consensus        89 l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (407)
                      ++|++ ++++|++++.|++|.+||+.+++.+.++......                      .+..+.+.++|..  .++
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~----------------------~p~~l~~spDG~~--l~v   56 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF----------------------GPGTAMMAPDNRT--AYV   56 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC----------------------SSCEEEECTTSSE--EEE
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC----------------------CcceEEECCCCCE--EEE
Confidence            35677 8999999999999999999988766554321111                      0112222223321  234


Q ss_pred             cccCCCCCCCCCCCCcCceeeEeecc------cCEEEEEECCCCCcEEEEEe------------CCCcEEEEEcCCCCCC
Q 046899          169 SKSGGNGDKPLESPSIGARGKYLGHE------DTVEDVQFCPSSAQEFCSVG------------DDSCLILWDARSGSTP  230 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~~~~~------~~v~~l~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~  230 (407)
                      ++..++.+.+||..+++.+..+....      ..+..++|+|+| .++++++            .++.+.+||..++...
T Consensus        57 ~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          57 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             EECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence            55677889999999988877665322      245678999999 5565553            4788999998876521


Q ss_pred             ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC-----------------CCC----------------
Q 046899          231 AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS-----------------DGV----------------  277 (407)
Q Consensus       231 ~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~-----------------~~~----------------  277 (407)
                      ...........+..+.+++ ++.+++++   +.+.+||+.+...                 ++.                
T Consensus       136 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (346)
T d1jmxb_         136 KPVRTFPMPRQVYLMRAAD-DGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  211 (346)
T ss_dssp             CCSEEEECCSSCCCEEECT-TSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             eEEEeeeccCceEEEEecC-CCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeee
Confidence            1111112233444555555 55544432   3355555433110                 000                


Q ss_pred             ----------------------------CCc-eeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          278 ----------------------------GSP-IHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       278 ----------------------------~~~-~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                                                  +.. ...+..|...+..+.+++++.+++ ... ++.|.+||+.+++.+..+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~d~~~~~~~~~~~  289 (346)
T d1jmxb_         212 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV-LNRLAKYDLKQRKLIKAAN  289 (346)
T ss_dssp             EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE-ESEEEEEETTTTEEEEEEE
T ss_pred             eeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEE-Eec-CCeEEEEECCCCcEEEEEc
Confidence                                        111 112234566788888999988764 544 5689999999988777665


Q ss_pred             cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhc
Q 046899          329 ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKF  396 (407)
Q Consensus       329 ~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h  396 (407)
                       ....+.+++||||                  +.+|++++.|+.|+|||..      +++++..++.+
T Consensus       290 -~~~~~~~va~s~D------------------G~~l~v~~~d~~v~v~D~~------t~~~i~~i~~p  332 (346)
T d1jmxb_         290 -LDHTYYCVAFDKK------------------GDKLYLGGTFNDLAVFNPD------TLEKVKNIKLP  332 (346)
T ss_dssp             -CSSCCCEEEECSS------------------SSCEEEESBSSEEEEEETT------TTEEEEEEECS
T ss_pred             -CCCCEEEEEEcCC------------------CCEEEEEeCCCcEEEEECc------cCCEEEEEECC
Confidence             3456889999999                  8999999999999999998      67777666633

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.3e-14  Score=128.01  Aligned_cols=281  Identities=7%  Similarity=0.122  Sum_probs=173.2

Q ss_pred             ccccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEEEEEeCCCCeEE-EEeeCCCcEEEEeCcCCCCcccccCcC
Q 046899           48 LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIV-ATHTDSPDVLIWDVEAQPNRHAVLGAA  126 (407)
Q Consensus        48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~~~~~~~~~~~  126 (407)
                      ++++..++++++|   .++.   .......+...|.+.|..|+|+| +|++| +++..|+.|++|++........+..+.
T Consensus         7 ~v~~~~~~~I~v~---~~~~---~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           7 YIASPESQQIHVW---NLNH---EGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEGGGTEEEEE---EECT---TSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEECCCCCcEEEE---EEcC---CCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            3566788899999   2221   22345667778999999999999 77776 555568999999998764433322111


Q ss_pred             CCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCccccc-cCCCCCCCCCCCCcCcee--eEeecccCEEEEEEC
Q 046899          127 DSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKNASK-SGGNGDKPLESPSIGARG--KYLGHEDTVEDVQFC  203 (407)
Q Consensus       127 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~  203 (407)
                      ..             ...       +..+.+.+.|.   .++++ ..++.+.+|+........  ....+...+.++.++
T Consensus        80 ~~-------------~~~-------p~~l~~spDg~---~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  136 (333)
T d1ri6a_          80 AL-------------PGS-------LTHISTDHQGQ---FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS  136 (333)
T ss_dssp             EC-------------SSC-------CSEEEECTTSS---EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC
T ss_pred             cc-------------CCC-------ceEEEEcCCCC---EEeecccCCCceeeeccccccceecccccCCCccceEEEee
Confidence            10             000       11111222222   12222 234556666554433322  233466678899999


Q ss_pred             CCCCcEEEEEeCCCcEEEEEcCCCCCCcee----eecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCCCCCCCC
Q 046899          204 PSSAQEFCSVGDDSCLILWDARSGSTPAVK----VEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKLTSDGVG  278 (407)
Q Consensus       204 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~~~~~~  278 (407)
                      |++...++....+..|.+|+..........    ...........++|++ ++.+++.. ...+...+++.......  .
T Consensus       137 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~--~  213 (333)
T d1ri6a_         137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGN--I  213 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSC--C
T ss_pred             ecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEec-cceeEEeeccccCceEEEeecccccc--e
Confidence            999444444445677999998776521111    1123345668899999 66666544 45677888887652210  1


Q ss_pred             Cceeeec------CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc---cCCCcccCCCCcCcchhcccc
Q 046899          279 SPIHKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG---ELKYPIIHPAYSSDMLDIETK  349 (407)
Q Consensus       279 ~~~~~~~------~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~~~~~  349 (407)
                      .......      ........++++++++++++++..++.+.+|++..........   .....+.+++||||       
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spD-------  286 (333)
T d1ri6a_         214 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS-------  286 (333)
T ss_dssp             EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT-------
T ss_pred             eeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCC-------
Confidence            1111221      1334677899999999998888889999999988765544333   23445678899999       


Q ss_pred             ceeeeeEeeCccceeeeE-EEeeeEEEeecc
Q 046899          350 LLTSIGMHLIHGRLLVCL-TMVKVLEIWRMI  379 (407)
Q Consensus       350 ~~~~~~~~~~~~~~i~~~-~~d~~i~iwd~~  379 (407)
                                 +++++++ ..+++|+||+++
T Consensus       287 -----------Gk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         287 -----------GKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             -----------SSEEEEECTTTCEEEEEEEE
T ss_pred             -----------CCEEEEEECCCCeEEEEEEE
Confidence                       7766544 456799999775

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=5.1e-15  Score=133.12  Aligned_cols=286  Identities=10%  Similarity=-0.047  Sum_probs=181.8

Q ss_pred             eCCCceEEEEEeCCCCeEEEEe-----eCCCcEEEEeCcCCCCcccccCcCCC----CCCC------------------C
Q 046899           81 IHPGEVNRIRELPQNSKIVATH-----TDSPDVLIWDVEAQPNRHAVLGAADS----HPDL------------------D  133 (407)
Q Consensus        81 ~h~~~v~~l~~~~~~~~~l~tg-----~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~------------------d  133 (407)
                      .+.+++..++++| +++.++..     +.++.|.+||..+++.+..+..+...    .++.                  +
T Consensus        18 ~~~~p~~~~a~sp-dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          18 AADGPTNDEAPGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             cCCCCccccccCC-CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccc
Confidence            5889999999999 66665543     23467999999998877665443221    1222                  5


Q ss_pred             CcEEEEecccccccccc------------CCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEE
Q 046899          134 QSVVLWSIQDHVSALAA------------EPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQ  201 (407)
Q Consensus       134 ~~i~~w~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~  201 (407)
                      +.+.+||..+.......            .+....+.+.+... .......++.+.+|+....+..    .+.....++.
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~-~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  171 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL-LFFQFAAGPAVGLVVQGGSSDD----QLLSSPTCYH  171 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcE-EEEEEcCCCceEEeeccCCeEE----EEeccceeEE
Confidence            67899999876432111            11122233333221 1112233455666666554433    3334567889


Q ss_pred             ECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc------CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 046899          202 FCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH------NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD  275 (407)
Q Consensus       202 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~  275 (407)
                      ++|++...+++.+.|+.+.+||.....  .......+      ......+.+++ ++ .++..+.++.+.+|+.....  
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~v~~~~~~~~~--  245 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGA--AGAGLVGAMLTAAQNLLTQPAQANK-SG-RIVWPVYSGKILQADISAAG--  245 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCce--eeEEEeeeccccCccceeeeEEECC-Cc-eEEEecCCceEEEEEcCCCe--
Confidence            999997788899999999999998776  23322211      12233455555 44 45566678999999987622  


Q ss_pred             CCCCceeeecCC----------CCCEEEEEEcCCCCCEE---------EEeeCCCeEEEEeCCCCCcccccccCCCcccC
Q 046899          276 GVGSPIHKFEGH----------SAAVLCVQWSPDKSSVF---------GSSAEDGILNIWDHEKIGEKQDYGELKYPIIH  336 (407)
Q Consensus       276 ~~~~~~~~~~~h----------~~~v~~v~~~~~~~~ll---------~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  336 (407)
                        ......+..+          ......+++++++..++         ++...++.+.+||+.+++.+..+. +...+.+
T Consensus       246 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~  322 (373)
T d2madh_         246 --ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDA  322 (373)
T ss_pred             --EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeE
Confidence              1111222211          12334455666655432         355667889999999988877665 4556778


Q ss_pred             CCCcCcchhccccceeeeeEeeCccc--eeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeec
Q 046899          337 PAYSSDMLDIETKLLTSIGMHLIHGR--LLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDK  405 (407)
Q Consensus       337 ~~~s~d~~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~  405 (407)
                      ++||||                  +.  .+++++.|++|+|||+.      +++.++++.+|-.....++.
T Consensus       323 ~a~spD------------------G~~~l~vt~~~d~~v~v~D~~------tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         323 ISVAQD------------------GGPDLYALSAGTEVLHIYDAG------AGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             EEECCC------------------CCEEEEEEeCCCCeEEEEECC------CCCEEEEECCCCCCCcEEEE
Confidence            999998                  55  45688999999999999      89999999888767676664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.60  E-value=1.7e-13  Score=123.03  Aligned_cols=241  Identities=11%  Similarity=-0.013  Sum_probs=150.9

Q ss_pred             eEEEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCcCCCCC-------------CC----------
Q 046899           86 VNRIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGAADSHP-------------DL----------  132 (407)
Q Consensus        86 v~~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~-------------~~----------  132 (407)
                      ...++|+| +|++|++++          .++.|.+||..+++....+..+.....             +.          
T Consensus        68 ~~~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          68 LPNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             CccEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            34789999 888888775          357899999999887655443322110             00          


Q ss_pred             CCcEEEEecccccccc-ccCCCCCcccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecc------cCEEEEEECCC
Q 046899          133 DQSVVLWSIQDHVSAL-AAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHE------DTVEDVQFCPS  205 (407)
Q Consensus       133 d~~i~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~------~~v~~l~~~~~  205 (407)
                      +..+.+|+.......- ...+....+.+.+.  ..+++.+.++.+.+|+...++.......+.      .....+.+.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQLLSSPTCYHIHPGAP--STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             CCceEEeeccCCeEEEEeccceeEEEecCCC--cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC
Confidence            2233344433321110 11111222333332  245678889999999998887766554322      22344556665


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC----------cceEEEEecCC---------CCCEEEEEeCCCcEEE
Q 046899          206 SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN----------ADIHCVDWNPH---------DVNLILTGSADNSIHM  266 (407)
Q Consensus       206 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~v~~l~~~~~---------~~~~l~tg~~dg~i~v  266 (407)
                      +  .++..+.++.+.+|+..............+.          .....+++++.         ++..+++...++.+.+
T Consensus       225 ~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         225 G--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             c--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence            5  4666778899999998876521111211111          12233444441         2334455667788999


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCE-EEEeeCCCeEEEEeCCCCCcccccccCCCcccCCC
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV-FGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPA  338 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  338 (407)
                      ||..+      ++.+..+. +...+.+++|+|||+++ +++++.|++|++||+.+++.+.++..+....+.++
T Consensus       303 ~d~~t------~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~  368 (373)
T d2madh_         303 VTGLV------GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLS  368 (373)
T ss_pred             EECCC------CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEE
Confidence            99998      78888776 56778999999999864 57899999999999999999998887655444443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1.2e-14  Score=129.51  Aligned_cols=129  Identities=16%  Similarity=0.168  Sum_probs=93.5

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeeccc----------CcceEEEEecCCCCCEEEEEeCC---
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAH----------NADIHCVDWNPHDVNLILTGSAD---  261 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~l~~~~~~~~~l~tg~~d---  261 (407)
                      ..+....+.+.+ ..++.++.++.+.+|++..+..........+          ......+++++ ++..++....+   
T Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         195 FLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDE  272 (355)
T ss_dssp             CBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCT
T ss_pred             ceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCc
Confidence            344555676766 6788889999999999988763222222111          12234578888 77777665433   


Q ss_pred             -------CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC-EEEEeeCCCeEEEEeCCCCCcccccccCCC
Q 046899          262 -------NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGILNIWDHEKIGEKQDYGELKY  332 (407)
Q Consensus       262 -------g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  332 (407)
                             ..|.+||..+      ++.+.++.. ...+.+++|+|+|+. ++++++.|++|++||+++++.++++..+..
T Consensus       273 ~~~~~~~~~v~v~d~~t------~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~  344 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKT------GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH  344 (355)
T ss_dssp             TCTTSCEEEEEEEETTT------CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred             eeecCCCCeEEEEeCCC------CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC
Confidence                   3699999998      788887763 456899999999985 567788899999999999998888875543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=6e-12  Score=110.47  Aligned_cols=272  Identities=10%  Similarity=0.029  Sum_probs=154.6

Q ss_pred             hhhhhhhhccCceEEEeeeecccCCCeeEEEEeec---c-cccCccceEEEEeecccCcccCCcceeeEEEeeCCCceEE
Q 046899           13 DDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ---L-EQATYKNRQRLYLSEQFNEEARSPFVKKFKTIIHPGEVNR   88 (407)
Q Consensus        13 ~~~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~---~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   88 (407)
                      ...+.+|+-+....+..+...+.+-....+.|.|+   + +++..++.+++|.   ++  .............+...+..
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~---i~--~~~~~~~~~~~~~~~~~p~~   87 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR---IA--PDDGALTFAAESALPGSLTH   87 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE---EC--TTTCCEEEEEEEECSSCCSE
T ss_pred             CCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEE---Ee--CCCCcEEEeeecccCCCceE
Confidence            45678888665544455555555555667788885   3 4566678888882   22  22222334444456677889


Q ss_pred             EEEeCCCCeEEEEeeC-CCcEEEEeCcCCCCccccc--CcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCC
Q 046899           89 IRELPQNSKIVATHTD-SPDVLIWDVEAQPNRHAVL--GAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANS  165 (407)
Q Consensus        89 l~~~~~~~~~l~tg~~-dg~i~vwd~~~~~~~~~~~--~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (407)
                      ++|+| ++++|++++. ++.|.+|+...........  .+.....                       ...+.+.+..  
T Consensus        88 l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~v~~s~d~~~--  141 (333)
T d1ri6a_          88 ISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH-----------------------SANISPDNRT--  141 (333)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC-----------------------CCEECTTSSE--
T ss_pred             EEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccce-----------------------EEEeeeccee--
Confidence            99999 7887777764 6789999887653222211  1111000                       0011111110  


Q ss_pred             ccccccCCCCCCCCCCCCcCceee------EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee--ee--
Q 046899          166 KNASKSGGNGDKPLESPSIGARGK------YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK--VE--  235 (407)
Q Consensus       166 ~~~~~~~~~~i~i~d~~~~~~~~~------~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~--  235 (407)
                      .+.....+..+.+|+.........      ..........++|++++...+.+....+...+++..........  ..  
T Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  221 (333)
T d1ri6a_         142 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM  221 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred             eeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeee
Confidence            011111222233333332222111      11234556889999998555555566778888887654421111  11  


Q ss_pred             ----cccCcceEEEEecCCCCCEE-EEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC
Q 046899          236 ----KAHNADIHCVDWNPHDVNLI-LTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED  310 (407)
Q Consensus       236 ----~~~~~~v~~l~~~~~~~~~l-~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d  310 (407)
                          .........+++++ +++++ +++..++.+.+|++.....   ...+.....+...+.+++|+|+|++|+++++.+
T Consensus       222 ~~~~~~~~~~~~~~~~s~-d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~  297 (333)
T d1ri6a_         222 MPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVSEDGS---VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS  297 (333)
T ss_dssp             SCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSC---CEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             eecCCCccccceeEEEec-ccCceeeecccCCeEEEEEEcCCCC---EEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence                11234567788999 66655 4556678999999876221   111122222445678999999999988777788


Q ss_pred             CeEEEEeCC
Q 046899          311 GILNIWDHE  319 (407)
Q Consensus       311 ~~i~vwd~~  319 (407)
                      ++|++|++.
T Consensus       298 ~~v~v~~id  306 (333)
T d1ri6a_         298 HHISVYEIV  306 (333)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEEEE
Confidence            999999553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=7e-14  Score=124.50  Aligned_cols=192  Identities=10%  Similarity=0.013  Sum_probs=119.6

Q ss_pred             cCCCCCCCCCCCCcCceeeEeeccc-------CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceE
Q 046899          171 SGGNGDKPLESPSIGARGKYLGHED-------TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIH  243 (407)
Q Consensus       171 ~~~~~i~i~d~~~~~~~~~~~~~~~-------~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  243 (407)
                      ..+..+.+|+..+++.+..+..+..       ....+.+++++..+++....++.+.+++.....       ..+...+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~  198 (355)
T d2bbkh_         126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-------PEDEFLIN  198 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-------CTTSCBCS
T ss_pred             CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-------ceecceee
Confidence            4556677888888887777654332       122344444443333333333444444433322       12333445


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCC----------CCCEEEEEEcCCCCCEEEEeeCC---
Q 046899          244 CVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGH----------SAAVLCVQWSPDKSSVFGSSAED---  310 (407)
Q Consensus       244 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h----------~~~v~~v~~~~~~~~ll~s~~~d---  310 (407)
                      ...+.+ ++..++.++.++.+++|++....    ...+.....+          ......+++++++..++++....   
T Consensus       199 ~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~  273 (355)
T d2bbkh_         199 HPAYSQ-KAGRLVWPTYTGKIHQIDLSSGD----AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  273 (355)
T ss_dssp             CCEEET-TTTEEEEEBTTSEEEEEECTTSS----CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             eccccC-CCCeEEEecCCCeEEEEecCCCc----EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCce
Confidence            566777 67788888999999999998721    1111122211          12334588999998776544332   


Q ss_pred             ------CeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCccc--eeeeEEEeeeEEEeeccccc
Q 046899          311 ------GILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGR--LLVCLTMVKVLEIWRMIDLI  382 (407)
Q Consensus       311 ------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~i~iwd~~~~~  382 (407)
                            +.|.+||+.+++.+..+.. ...+.+++||||                  +.  .++++..|++|+|||..   
T Consensus       274 ~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spD------------------G~~~l~v~~~~d~~i~v~D~~---  331 (355)
T d2bbkh_         274 RHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQD------------------EKPLLYALSTGDKTLYIHDAE---  331 (355)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCS------------------SSCEEEEEETTTTEEEEEETT---
T ss_pred             eecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCC------------------CCeEEEEEECCCCEEEEEECC---
Confidence                  4799999999888777654 344678889888                  54  45567778999999998   


Q ss_pred             cCChHHHHHHHhhcccc
Q 046899          383 YRPEEEVLAELDKFKSH  399 (407)
Q Consensus       383 ~~~~~~~~~~~~~h~~~  399 (407)
                         +++.++++.++-..
T Consensus       332 ---tg~~~~~i~~~G~~  345 (355)
T d2bbkh_         332 ---SGEELRSVNQLGHG  345 (355)
T ss_dssp             ---TCCEEEEECCCCSS
T ss_pred             ---CCCEEEEEeCcCCC
Confidence               78888777765433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=1.6e-12  Score=116.83  Aligned_cols=262  Identities=6%  Similarity=-0.027  Sum_probs=149.4

Q ss_pred             EEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC----CCcEEEEeccccccc-cccCCCC--CcccccCCCCCccccc
Q 046899           98 IVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL----DQSVVLWSIQDHVSA-LAAEPGS--AKSTASGGANSKNASK  170 (407)
Q Consensus        98 ~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----d~~i~~w~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~  170 (407)
                      .++||+.+|+|+||++.+++.+..+..........    +.+.+++........ -..++..  ....++|+.  .++..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~--lfV~d   90 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY--LFIND   90 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE--EEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE--EEEEc
Confidence            47888899999999999887666553321110000    000000000000000 0000000  001122322  23445


Q ss_pred             cCCCCCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcE------------------EEEEcCCCCCCc
Q 046899          171 SGGNGDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCL------------------ILWDARSGSTPA  231 (407)
Q Consensus       171 ~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i------------------~iwd~~~~~~~~  231 (407)
                      ..+..+.++|+.+++....+. .+...+..++|+|++...++++..+..+                  ..+|..+.+  .
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~--v  168 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD--V  168 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS--E
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce--e
Confidence            677888999999998877665 3567889999999984433433333333                  447777665  3


Q ss_pred             eeeecccCcceEEEEecCCCCCEEEEEeCC-----------------------------------------CcEEEEeCC
Q 046899          232 VKVEKAHNADIHCVDWNPHDVNLILTGSAD-----------------------------------------NSIHMFDRR  270 (407)
Q Consensus       232 ~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-----------------------------------------g~i~vwd~~  270 (407)
                      ..... -......+.++| +++++++.+.+                                         +.+.+++..
T Consensus       169 ~~qI~-v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~  246 (441)
T d1qnia2         169 AWQVI-VDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG  246 (441)
T ss_dssp             EEEEE-ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS
T ss_pred             eEEEe-cCCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc
Confidence            33332 234567889999 88888776644                                         233333333


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccc
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKL  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  350 (407)
                      .      .+.+..+..... ...+.++|||+++++++..+++|.|||+.+....  +.+.-.+..++...+.+   -.+-
T Consensus       247 ~------~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~--~~~~~~~~~~~~~~~~~---glgp  314 (441)
T d1qnia2         247 E------SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL--FEDKIELRDTIVAEPEL---GLGP  314 (441)
T ss_dssp             S------CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH--TTTSSCGGGGEEECCBC---CSCE
T ss_pred             C------CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH--hhccCCcceEEEeeccc---ccCc
Confidence            3      456667766554 4789999999999999999999999999874432  22222222222221110   0000


Q ss_pred             eeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          351 LTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       351 ~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +.  -.+.+.+..+.+...|+.|..|++.
T Consensus       315 lh--~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         315 LH--TTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EE--EEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             cc--ceecCCceEEEcccccceEEEeccc
Confidence            11  2334446677788889999999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.28  E-value=8.7e-11  Score=104.92  Aligned_cols=231  Identities=9%  Similarity=-0.018  Sum_probs=138.8

Q ss_pred             EEEEeCCCCeEEEEee----------CCCcEEEEeCcCCCCcccccCcCC-------------CCCCC---------CCc
Q 046899           88 RIRELPQNSKIVATHT----------DSPDVLIWDVEAQPNRHAVLGAAD-------------SHPDL---------DQS  135 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~----------~dg~i~vwd~~~~~~~~~~~~~~~-------------~~~~~---------d~~  135 (407)
                      .++|+| +++.|++.+          .|+.|++||..+.+....+..+..             ..++.         ++.
T Consensus        69 ~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             cceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence            588899 787777654          467899999998876654432111             11221         678


Q ss_pred             EEEEeccccccccccC-CCCCcccccCCCCCccccccCCCCCCCCCCCCcCceee------EeecccCEEEEEECCCCCc
Q 046899          136 VVLWSIQDHVSALAAE-PGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGK------YLGHEDTVEDVQFCPSSAQ  208 (407)
Q Consensus       136 i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~------~~~~~~~v~~l~~~~~~~~  208 (407)
                      +.+||+.+....-... +......+.+.  ...+..+.|+.+..++.........      +..+...+....+.+++ .
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~  224 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFHIHPGAA--ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG-M  224 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCCCEEEET--TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT-E
T ss_pred             EEEEECCCCcEeEEeeccCcceEccCCC--ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc-E
Confidence            8888888764322211 11111111221  2344556677776666544333221      12233445567777777 4


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCceeeecc----------cCcceEEEEecCCCCCEEEEEeCC---------CcEEEEeC
Q 046899          209 EFCSVGDDSCLILWDARSGSTPAVKVEKA----------HNADIHCVDWNPHDVNLILTGSAD---------NSIHMFDR  269 (407)
Q Consensus       209 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~l~tg~~d---------g~i~vwd~  269 (407)
                      .+.+  .++.+.++++.............          .......++++| ++..++....+         ..|.+||.
T Consensus       225 ~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~~v~v~D~  301 (368)
T d1mdah_         225 LVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             EEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             EEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCceEEEEEC
Confidence            4433  35667777776554211111111          111223577888 65655443222         35899999


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCC-EEEEeeCCCeEEEEeCCCCCcccccccCCC
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGILNIWDHEKIGEKQDYGELKY  332 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  332 (407)
                      .+      ++.+.++.. ...+.+++|+|||+. ++++++.|++|++||..+++.+.+++-...
T Consensus       302 ~t------~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~  358 (368)
T d1mdah_         302 SV------GQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             SS------CCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             CC------CcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC
Confidence            98      788877763 457899999999975 667888899999999999998888775443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=9.7e-08  Score=80.46  Aligned_cols=185  Identities=12%  Similarity=0.080  Sum_probs=111.6

Q ss_pred             EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCc--EEEE
Q 046899          190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNS--IHMF  267 (407)
Q Consensus       190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~--i~vw  267 (407)
                      +..+........|+|++..++.....++...++....... ................+++.....+++...+|.  |.+.
T Consensus        78 ~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~  156 (269)
T d2hqsa1          78 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  156 (269)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EeeeecccccceecCCCCeeeEeeecCCccceeecccccc-cceeeeeccccccccccccccccceecccccCCceEeee
Confidence            3346677788999999955555554555544444443332 133333444444556677734445555555664  4455


Q ss_pred             eCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhcc
Q 046899          268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIE  347 (407)
Q Consensus       268 d~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~  347 (407)
                      ++..       .....+..+........|+|++..++.+....+...+|....................+.||||     
T Consensus       157 ~~~~-------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPD-----  224 (269)
T d2hqsa1         157 NING-------GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPN-----  224 (269)
T ss_dssp             ETTS-------SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTT-----
T ss_pred             eccc-------ccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCC-----
Confidence            5554       3344455566778888999999988766666666555554433333333334444556788888     


Q ss_pred             ccceeeeeEeeCccceeeeEEEe---eeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          348 TKLLTSIGMHLIHGRLLVCLTMV---KVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       348 ~~~~~~~~~~~~~~~~i~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                                   +..|+-.+..   +.|+++++.       +.....+....+.+...+|||
T Consensus       225 -------------G~~i~f~s~~~~~~~l~~~~~d-------g~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         225 -------------GTMVIYSSSQGMGSVLNLVSTD-------GRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             -------------SSEEEEEEEETTEEEEEEEETT-------SCCEEECCCSSSEEEEEEECC
T ss_pred             -------------CCEEEEEEcCCCCcEEEEEECC-------CCCEEEEeCCCCcEEeEEeCC
Confidence                         7777654443   388999986       333345666677788889987

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.97  E-value=5.2e-09  Score=96.36  Aligned_cols=115  Identities=13%  Similarity=0.187  Sum_probs=88.9

Q ss_pred             EEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee---eecccCcceEEEEecCCCCCEEEEEeC---------CCcEEE
Q 046899          199 DVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK---VEKAHNADIHCVDWNPHDVNLILTGSA---------DNSIHM  266 (407)
Q Consensus       199 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~l~tg~~---------dg~i~v  266 (407)
                      .+.|.+++ .++.  ..|+.+.+||+.+++...+.   .+..|...|.++.|+| |+++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~-~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDH-EYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSS-EEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCC-EEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEE
Confidence            47899988 6554  35789999999998832111   2334557899999999 9999988753         567899


Q ss_pred             EeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccc
Q 046899          267 FDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQD  326 (407)
Q Consensus       267 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  326 (407)
                      ||+.+      + .+..+..|...+..+.|||||+++ |.. .++.+.+|++..++..+.
T Consensus        97 ~d~~~------~-~~~~l~~~~~~~~~~~~SPDG~~i-a~~-~~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1          97 YDLNK------R-QLITEERIPNNTQWVTWSPVGHKL-AYV-WNNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             EETTT------T-EECCSSCCCTTEEEEEECSSTTCE-EEE-ETTEEEEESSTTSCCEEC
T ss_pred             EECCC------C-cccccccCCccccccccccCccee-eEe-ecccceEEECCCCceeee
Confidence            99997      4 466788889999999999999976 454 578999999998766543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=3.6e-09  Score=97.45  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=81.7

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCC
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGD---------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADN  262 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg  262 (407)
                      .|...|.++.|+|++ ++|+.++.         ++.+.+||+.+++   ...+..+...+..+.|+| ||+.+|... ++
T Consensus        59 ~~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~---~~~l~~~~~~~~~~~~SP-DG~~ia~~~-~~  132 (470)
T d2bgra1          59 EFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSP-VGHKLAYVW-NN  132 (470)
T ss_dssp             TSSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECS-STTCEEEEE-TT
T ss_pred             hccCccceeEECCCC-CEEEEEECCcceeeeccCceEEEEECCCCc---ccccccCCcccccccccc-CcceeeEee-cc
Confidence            456678999999999 67776643         5678999999876   456678888999999999 999998864 67


Q ss_pred             cEEEEeCCCCCCCCCCCceeeecC------------------CCCCEEEEEEcCCCCCEEEEeeCC-CeEEEEe
Q 046899          263 SIHMFDRRKLTSDGVGSPIHKFEG------------------HSAAVLCVQWSPDKSSVFGSSAED-GILNIWD  317 (407)
Q Consensus       263 ~i~vwd~~~~~~~~~~~~~~~~~~------------------h~~~v~~v~~~~~~~~ll~s~~~d-~~i~vwd  317 (407)
                      .+.+|+...      ++.......                  ..+....+.|+|||++| |....| ..+..|+
T Consensus       133 ~l~~~~~~~------g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~i-a~~~~d~~~v~~~~  199 (470)
T d2bgra1         133 DIYVKIEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL-AYAQFNDTEVPLIE  199 (470)
T ss_dssp             EEEEESSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE-EEEEEECTTCCEEE
T ss_pred             cceEEECCC------CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcc-ceeEecCCcCceEE
Confidence            899999887      444433221                  12334668899999987 455544 3244443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.90  E-value=7.6e-08  Score=85.25  Aligned_cols=163  Identities=12%  Similarity=0.026  Sum_probs=97.9

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCC-ceee--ecccCcceEEEEecCCCCCEEEE-EeCCCcEEEEeCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTP-AVKV--EKAHNADIHCVDWNPHDVNLILT-GSADNSIHMFDRR  270 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~--~~~~~~~v~~l~~~~~~~~~l~t-g~~dg~i~vwd~~  270 (407)
                      ..+.++.|+|+|..++++......|.+|+....... ....  ..........+.|+| +++++++ .-.++.|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence            357899999999444444444568889887644311 1111  112345678999999 7777754 4567899999987


Q ss_pred             CCCCCCCCCceeeec-----------------CCCCCEEEEEEcCCCCCEEEEeeCCCe-----EEEEeCCCCCcccccc
Q 046899          271 KLTSDGVGSPIHKFE-----------------GHSAAVLCVQWSPDKSSVFGSSAEDGI-----LNIWDHEKIGEKQDYG  328 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~-----------------~h~~~v~~v~~~~~~~~ll~s~~~d~~-----i~vwd~~~~~~~~~~~  328 (407)
                      ...    ...+....                 .+......+.++|+|++|+++...+..     |..|++.....+....
T Consensus       224 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~  299 (365)
T d1jofa_         224 PAT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             TTT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             CCC----ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence            622    12221111                 122346688999999999877654443     7788877644332211


Q ss_pred             ------cCCCcccCCCCcCcchhccccceeeeeEeeCccceee-eEEEeeeEEEeecc
Q 046899          329 ------ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLV-CLTMVKVLEIWRMI  379 (407)
Q Consensus       329 ------~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~i~iwd~~  379 (407)
                            .......+++++|.                 .+.+|+ +...++.|.||+++
T Consensus       300 ~~~~~~~~G~~p~~i~~~p~-----------------~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         300 FLSPTPTSGGHSNAVSPCPW-----------------SDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTT-----------------CTTEEEEECSSSCEEEEEEEE
T ss_pred             EeeEEEcCCCCccEEEecCC-----------------CCCEEEEEeCCCCeEEEEEEe
Confidence                  12222344555541                 156554 44566799999986

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.86  E-value=7.5e-08  Score=85.35  Aligned_cols=257  Identities=10%  Similarity=-0.035  Sum_probs=138.5

Q ss_pred             hhhhhhccCceEEEeeeecccCCCeeEEEEeec-------------ccccCccceEEEEeecccCcccCCcceeeEEEe-
Q 046899           15 RYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQ-------------LEQATYKNRQRLYLSEQFNEEARSPFVKKFKTI-   80 (407)
Q Consensus        15 ~~~~w~~~~~~~y~~l~~~~~~~p~~s~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-   80 (407)
                      ++.+|....+-++..+.....+    ...|.|+             +.++..++.+++|     +..    ..+....+ 
T Consensus        47 ~~~~~d~~~~~~~~~~~~~~~~----~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~-----D~~----t~~~~~~i~  113 (368)
T d1mdah_          47 ENWVSCAGCGVTLGHSLGAFLS----LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF-----DPV----TFLPIADIE  113 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC----EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE-----CTT----TCCEEEEEE
T ss_pred             eEEEEeCCCCcEEEEEeCCCCC----cceECCCCCEEEEEcccCccccccccCCeEEEE-----ECC----CCcEeeeec
Confidence            4455566666666655444332    1344443             3345667778888     211    11222221 


Q ss_pred             eC-------CCceEEEEEeCCCCeEEEEee-CCCcEEEEeCcCCCCcccccCcCCC-----------CCCCCCcEEEEec
Q 046899           81 IH-------PGEVNRIRELPQNSKIVATHT-DSPDVLIWDVEAQPNRHAVLGAADS-----------HPDLDQSVVLWSI  141 (407)
Q Consensus        81 ~h-------~~~v~~l~~~~~~~~~l~tg~-~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~~d~~i~~w~~  141 (407)
                      .+       ......++|+| ++++|+.+. .++.|.+||+.+.+....+..+...           ..+.|+.+.++++
T Consensus       114 ~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~  192 (368)
T d1mdah_         114 LPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             CCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEe
Confidence            11       22344688999 777776664 5799999999988766554332211           1112888888887


Q ss_pred             cccccccccCCCC------CcccccCCCCCccccccCCCCCCCCCCCCcCceeeE--ee----------cccCEEEEEEC
Q 046899          142 QDHVSALAAEPGS------AKSTASGGANSKNASKSGGNGDKPLESPSIGARGKY--LG----------HEDTVEDVQFC  203 (407)
Q Consensus       142 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~----------~~~~v~~l~~~  203 (407)
                      .............      ...................+.+.+.+..........  ..          .......++++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  272 (368)
T d1mdah_         193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             CSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             cCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEc
Confidence            6553221110000      000000000011112223333444433332221111  00          01122347788


Q ss_pred             CCCCcEEEEEeCC--------CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCC--EEEEEeCCCcEEEEeCCCCC
Q 046899          204 PSSAQEFCSVGDD--------SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVN--LILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       204 ~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~l~tg~~dg~i~vwd~~~~~  273 (407)
                      |++..+++....+        ..|.+||..+++  ....+ .+...+.+++|+| |++  +++++..|+.|++||..+  
T Consensus       273 ~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~-~~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~t--  346 (368)
T d1mdah_         273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPI-SNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAAS--  346 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECC-EEEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSS--
T ss_pred             CCCCEEEEEecCCCceeecCCceEEEEECCCCc--EeEEe-cCCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCC--
Confidence            8884444443322        358999999887  45444 3456788999999 775  456777899999999999  


Q ss_pred             CCCCCCceeeecCCCCCEEEEEE
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQW  296 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~  296 (407)
                          ++.+.++..... -+.|++
T Consensus       347 ----gk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         347 ----DQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             ----CEEEEECCCCSC-CCEEEC
T ss_pred             ----CCEEEEEECCCC-CCEEEE
Confidence                899999886443 345544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.84  E-value=4.8e-09  Score=93.87  Aligned_cols=158  Identities=7%  Similarity=-0.059  Sum_probs=107.0

Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee-cccCcceEEEEecCCCCC--EEEEEeCCC-------
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE-KAHNADIHCVDWNPHDVN--LILTGSADN-------  262 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~--~l~tg~~dg-------  262 (407)
                      |..........|+|..++++...+++|.++|+++.+  ..... ..+...+..++|+| +++  +++.++.+.       
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k--~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMK--TDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE--EEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCc--EeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcc
Confidence            445556666789995555666788999999999987  34333 24567889999999 777  444444332       


Q ss_pred             ----------cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC-----------------------
Q 046899          263 ----------SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE-----------------------  309 (407)
Q Consensus       263 ----------~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~-----------------------  309 (407)
                                .+..+|..+      .+...++... .....++|+|+|+++++++..                       
T Consensus       147 ~~~~~~~~~~~~~~iD~~t------~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~  219 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAET------MDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV  219 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTT------CSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH
T ss_pred             cccccccccceEEeecCcc------ceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc
Confidence                      234578777      6666666543 356889999999988766533                       


Q ss_pred             -----------------CCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccceeeeeEeeCcccee-eeEEEee
Q 046899          310 -----------------DGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLL-VCLTMVK  371 (407)
Q Consensus       310 -----------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~  371 (407)
                                       ++.+.+++....+.+..++....| .++.+|||                  +.++ +++..++
T Consensus       220 p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPD------------------Gkyl~~~~~~~~  280 (441)
T d1qnia2         220 ERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPD------------------GKYFIANGKLSP  280 (441)
T ss_dssp             HHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSC-CCEEECTT------------------SCEEEEECTTSS
T ss_pred             cceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCc-cCceECCC------------------CCEEEEeCCcCC
Confidence                             344555555554555555554443 56777777                  6654 5788999


Q ss_pred             eEEEeecc
Q 046899          372 VLEIWRMI  379 (407)
Q Consensus       372 ~i~iwd~~  379 (407)
                      +|.|||+.
T Consensus       281 tvsv~d~~  288 (441)
T d1qnia2         281 TVSVIAID  288 (441)
T ss_dssp             BEEEEEGG
T ss_pred             cEEEEEee
Confidence            99999986

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.74  E-value=8.5e-07  Score=75.13  Aligned_cols=241  Identities=12%  Similarity=0.087  Sum_probs=139.2

Q ss_pred             ceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCC
Q 046899           85 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGAN  164 (407)
Q Consensus        85 ~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  164 (407)
                      ....|++.+ +++++++-..+..|++||.+. ..+..+.............-.++-.....                  .
T Consensus        24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------------~   83 (279)
T d1q7fa_          24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSG------------------D   83 (279)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTT------------------E
T ss_pred             CccEEEEcC-CCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCccccccccccccccccc------------------c
Confidence            468899888 788888877788999999653 33322211100000000000011000000                  0


Q ss_pred             CccccccCCCCCCCCCCCCcCceeeEe-ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cccCcc
Q 046899          165 SKNASKSGGNGDKPLESPSIGARGKYL-GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KAHNAD  241 (407)
Q Consensus       165 ~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~  241 (407)
                      ........+..+..++. .++....+. ........+++.+++ .++++....+.+.+++.. ++  ....+  ..+...
T Consensus        84 ~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~-g~--~~~~~g~~~~~~~  158 (279)
T d1q7fa_          84 IIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GN--VLHKFGCSKHLEF  158 (279)
T ss_dssp             EEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEEECTTTCSS
T ss_pred             cceeccCCccccccccc-cccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccC-Cc--eeecccccccccc
Confidence            00011111222223332 233333332 233556789999988 777777777888888864 33  23332  345567


Q ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec--CCCCCEEEEEEcCCCCCEEEEee-CCCeEEEEeC
Q 046899          242 IHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE--GHSAAVLCVQWSPDKSSVFGSSA-EDGILNIWDH  318 (407)
Q Consensus       242 v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~ll~s~~-~d~~i~vwd~  318 (407)
                      ...+++++ +++++++....+.|++||..       ++.+.++.  +.......|++.++|. |+++-. .++.|.+++.
T Consensus       159 ~~~i~~d~-~g~i~v~d~~~~~V~~~d~~-------G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         159 PNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             EEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT
T ss_pred             cceeeecc-ceeEEeeeccccceeeeecC-------CceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECC
Confidence            78899998 88888888888999999976       57777774  3455688999999998 555543 3557999984


Q ss_pred             CCCCcccccccCC--CcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          319 EKIGEKQDYGELK--YPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       319 ~~~~~~~~~~~~~--~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                       .++.+.++....  ....++++.+|                  +. |+....+.+|++|+..
T Consensus       230 -~G~~~~~~~~~~~~~~p~~vav~~d------------------G~-l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         230 -DGQLISALESKVKHAQCFDVALMDD------------------GS-VVLASKDYRLYIYRYV  272 (279)
T ss_dssp             -TSCEEEEEEESSCCSCEEEEEEETT------------------TE-EEEEETTTEEEEEECS
T ss_pred             -CCCEEEEEeCCCCCCCEeEEEEeCC------------------Cc-EEEEeCCCeEEEEEee
Confidence             455555543221  11223333333                  44 4445567799999986

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.70  E-value=1.1e-06  Score=75.25  Aligned_cols=204  Identities=10%  Similarity=0.035  Sum_probs=130.8

Q ss_pred             EEEeeCCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCc
Q 046899           77 FKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        77 ~~~~~h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      ...+.-...+..+++.| +|+++++...+++|..|+....                                        
T Consensus        21 ~~~~p~~~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~----------------------------------------   59 (302)
T d2p4oa1          21 ITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN----------------------------------------   59 (302)
T ss_dssp             EEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC----------------------------------------
T ss_pred             EEECCCCCCcCCEEECC-CCCEEEEeCCCCEEEEEeCCCC----------------------------------------
Confidence            33344444688999999 8999999998888877764421                                        


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee-e
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV-E  235 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~  235 (407)
                                                    ...+......+.+++|.|+| +++++...++.+..++........... .
T Consensus        60 ------------------------------~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~  108 (302)
T d2p4oa1          60 ------------------------------QQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLT  108 (302)
T ss_dssp             ------------------------------EEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             ------------------------------EEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceeeccc
Confidence                                          01122334568899999999 788888888999888876544211111 1


Q ss_pred             cccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeee----------cCCCCCEEEEEEcCCCCCEEE
Q 046899          236 KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKF----------EGHSAAVLCVQWSPDKSSVFG  305 (407)
Q Consensus       236 ~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~----------~~h~~~v~~v~~~~~~~~ll~  305 (407)
                      .......+.+.+.+ +++++++-+.++.+..+|...      .......          .........+.+.  +.++++
T Consensus       109 ~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~  179 (302)
T d2p4oa1         109 LPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ------PSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYV  179 (302)
T ss_dssp             CTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT------TEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEE
T ss_pred             cCCccccceeEEcc-CCCEEeeccccccceeeeccC------CcceeEecCCccceeeccCccccccccccc--CCceee
Confidence            23345678999999 889888888888888888775      2211111          1112345667665  445777


Q ss_pred             EeeCCCeEEEEeCCCCCcccccc--cCCCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          306 SSAEDGILNIWDHEKIGEKQDYG--ELKYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       306 s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +.+..+.|..+++..........  .......++++++|                  +...++...+++|..++..
T Consensus       180 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d------------------G~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         180 SNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE------------------GNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT------------------CCEEEECBTTCCEEEECTT
T ss_pred             ecCCCCeEEeccccccccccccccccCCCCCcceEECCC------------------CCEEEEEcCCCcEEEECCC
Confidence            88889999999987654433221  11222334555554                  5555555556677777653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=2e-06  Score=71.89  Aligned_cols=114  Identities=9%  Similarity=0.031  Sum_probs=81.6

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTS  274 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~  274 (407)
                      ....++++.+++ +++++-..+..+..++.....  .......-.....++++++ +++++++...++.|..+|...   
T Consensus        98 ~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~---  170 (260)
T d1rwia_          98 NYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES---  170 (260)
T ss_dssp             CSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSS--CEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTT---
T ss_pred             eecccccccccc-eeEeeccccccccccccccce--eeeeeecccCCcceeeecC-CCCEeeecccccccccccccc---
Confidence            456899999988 777777777778888766544  2222222234457899999 888888888888999999875   


Q ss_pred             CCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCC
Q 046899          275 DGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       275 ~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                          .....+. ..-.....|++.++|. |+++....+.|..++...
T Consensus       171 ----~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         171 ----NNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             ----CCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTC
T ss_pred             ----ceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCC
Confidence                2333332 3445678999999987 677887788898888664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.59  E-value=1.4e-05  Score=68.68  Aligned_cols=122  Identities=14%  Similarity=0.228  Sum_probs=89.1

Q ss_pred             cCEEEEEECCCCC----cEEEEEeCCCcEEEEEcCCCCCCcee----eecc-cCcceEEEEecCCCCCEEEEEeCCCcEE
Q 046899          195 DTVEDVQFCPSSA----QEFCSVGDDSCLILWDARSGSTPAVK----VEKA-HNADIHCVDWNPHDVNLILTGSADNSIH  265 (407)
Q Consensus       195 ~~v~~l~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~-~~~~v~~l~~~~~~~~~l~tg~~dg~i~  265 (407)
                      ..-+.++|+|++.    .++++-+..+.|..||+.........    .+.. .......+++++ ++++.++....+.|.
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIE  250 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEE
Confidence            3456889988752    25566677889999998654311111    1111 122356799999 889888877889999


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCc
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGE  323 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  323 (407)
                      +||.+.      ++.+..+.......++++|.|+++.|++|.+.++.|...++....+
T Consensus       251 ~~dp~~------g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         251 VFGPDG------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             EECTTC------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             EEeCCC------CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence            999887      6777777766678899999999988888988899999998876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.58  E-value=2.1e-06  Score=75.64  Aligned_cols=119  Identities=13%  Similarity=0.102  Sum_probs=80.1

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec-----------------ccCcceEEEEecCCCCCEEEE
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK-----------------AHNADIHCVDWNPHDVNLILT  257 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~v~~l~~~~~~~~~l~t  257 (407)
                      .....++|+|++..++++...+++|.+||+............                 .+......+.++| ++++|++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyv  271 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFA  271 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEE
Confidence            456889999999555566667899999999766521111110                 1122356789999 8998877


Q ss_pred             EeC------CCcEEEEeCCCCCCCCCCCceee------ecCCCCCEEEEEEcC-CCCCEEEEeeCCCeEEEEeCCC
Q 046899          258 GSA------DNSIHMFDRRKLTSDGVGSPIHK------FEGHSAAVLCVQWSP-DKSSVFGSSAEDGILNIWDHEK  320 (407)
Q Consensus       258 g~~------dg~i~vwd~~~~~~~~~~~~~~~------~~~h~~~v~~v~~~~-~~~~ll~s~~~d~~i~vwd~~~  320 (407)
                      +..      .+.|..|++...      ..+..      .........+++++| +|++|+++...++.|.+|+++.
T Consensus       272 snr~~~~~~~~~i~~~~~~~~------g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDC------GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTT------SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EcccCCCccceEEEEEEecCC------CceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            642      234778887652      22211      112334567899998 7899988888999999998765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.41  E-value=1.7e-05  Score=68.28  Aligned_cols=183  Identities=7%  Similarity=-0.032  Sum_probs=101.2

Q ss_pred             cCEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCCCCceeeec--ccCcceEEEEecCCCCCEEEEEeC------CC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDD----SCLILWDARSGSTPAVKVEK--AHNADIHCVDWNPHDVNLILTGSA------DN  262 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~tg~~------dg  262 (407)
                      .....|+++++| +++++...+    +.+...+.....  ......  .-....+.+.+++ ++++.++...      .+
T Consensus        82 ~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g  157 (319)
T d2dg1a1          82 ANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDN--LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLG  157 (319)
T ss_dssp             SSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCS--CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCE
T ss_pred             CCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCce--eeeeccCCCcccCCcceeEEe-ccceeecccccccccCcc
Confidence            356789999999 666665432    334555554444  222221  1123467899999 8887666322      12


Q ss_pred             cEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCc-ccCCCCcC
Q 046899          263 SIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYP-IIHPAYSS  341 (407)
Q Consensus       263 ~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~  341 (407)
                      .+..++...       ..+..+...-...+.++|+|+++.|+++-+..+.|..||+............... ...-...|
T Consensus       158 ~v~~~~~dg-------~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~P  230 (319)
T d2dg1a1         158 GVYYVSPDF-------RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP  230 (319)
T ss_dssp             EEEEECTTS-------CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred             eeEEEeccc-------ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccce
Confidence            355555443       3344333223456889999999988878888999999998754322211110000 00111123


Q ss_pred             cchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHh------hcccceeEeecc
Q 046899          342 DMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELD------KFKSHIFGCDKS  406 (407)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~~~~s  406 (407)
                      |-           +.....++..++....+.|.++|-.       ++.+..+.      ++...+++++|.
T Consensus       231 dG-----------l~vD~~G~l~Va~~~~g~V~~~~p~-------G~~l~~i~~P~~~~~~~~~~~~~~~~  283 (319)
T d2dg1a1         231 DS-----------CCIDSDDNLYVAMYGQGRVLVFNKR-------GYPIGQILIPGRDEGHMLRSTHPQFI  283 (319)
T ss_dssp             EE-----------EEEBTTCCEEEEEETTTEEEEECTT-------SCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred             ee-----------eeEcCCCCEEEEEcCCCEEEEECCC-------CcEEEEEeCCCcCCCcCceeeeEEEe
Confidence            31           2333335555566667789998863       44443332      444556777764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=8.9e-06  Score=67.84  Aligned_cols=112  Identities=11%  Similarity=0.073  Sum_probs=79.6

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD  275 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~  275 (407)
                      ....++++|++ +++++...++.|..+|.....  ..............|++++ +++++++....+.|..++...    
T Consensus       141 ~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~--~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~----  212 (260)
T d1rwia_         141 DPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNN--QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGS----  212 (260)
T ss_dssp             SCCEEEECTTC-CEEEEEGGGTEEEEECTTTCC--EEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTC----
T ss_pred             CcceeeecCCC-CEeeeccccccccccccccce--eeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCC----
Confidence            44678999988 788888888899999987554  2322234445678999999 888888888788888887664    


Q ss_pred             CCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCC
Q 046899          276 GVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHE  319 (407)
Q Consensus       276 ~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~  319 (407)
                         .....+. ..-.....|+++++|. |+++-..++.|+.++..
T Consensus       213 ---~~~~~~~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         213 ---TTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             ---SCCEECCCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEECCC
T ss_pred             ---CeEEEEccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEeCC
Confidence               2223332 2234578999999987 66676777777765543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.24  E-value=3.6e-05  Score=65.57  Aligned_cols=102  Identities=14%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 046899          196 TVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSD  275 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~  275 (407)
                      ....+.+..+  .++++.+..+.|..++.....................+++++ +++++++...++.|..++...    
T Consensus       166 ~~ngi~~~~~--~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G----  238 (302)
T d2p4oa1         166 AANGLKRFGN--FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDR----  238 (302)
T ss_dssp             SEEEEEEETT--EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTC----
T ss_pred             ccccccccCC--ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCC----
Confidence            4566777542  577788889999999987654211222222334456799999 889888888899999997764    


Q ss_pred             CCCCc--eeeecCCCCCEEEEEE---cCCCCCEEEEe
Q 046899          276 GVGSP--IHKFEGHSAAVLCVQW---SPDKSSVFGSS  307 (407)
Q Consensus       276 ~~~~~--~~~~~~h~~~v~~v~~---~~~~~~ll~s~  307 (407)
                         +.  +......-...++++|   .+|++.|+++.
T Consensus       239 ---~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         239 ---STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             ---CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             ---CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence               32  3333334456899999   67888777554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=0.00031  Score=58.11  Aligned_cols=133  Identities=13%  Similarity=0.116  Sum_probs=79.9

Q ss_pred             EEEEECCCCCcEEEEEeCCCcEEE--EEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC-CcEEEEeCCCCCC
Q 046899          198 EDVQFCPSSAQEFCSVGDDSCLIL--WDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD-NSIHMFDRRKLTS  274 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d-g~i~vwd~~~~~~  274 (407)
                      ....+++++...+++...++...+  .++....   ...............|+| ++..++..+.+ +...+|.....  
T Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~--  203 (269)
T d2hqsa1         130 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLA--  203 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETT--
T ss_pred             cccccccccccceecccccCCceEeeeeccccc---ceeeeccccccccccccc-ccceeEEEeecCCceeeeEeecc--
Confidence            344566666456666666665444  4554443   333445566777889999 77777665544 44444443331  


Q ss_pred             CCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeC--CCeEEEEeCCCCCcccccccCCCcccCCCCcC
Q 046899          275 DGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGILNIWDHEKIGEKQDYGELKYPIIHPAYSS  341 (407)
Q Consensus       275 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~  341 (407)
                         .... ....+........|+|||++|+.+...  ...|.++++.... ...+....+.+..++|||
T Consensus       204 ---~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         204 ---TGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ---TCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             ---cccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence               1222 333455667888999999988555543  3468889988644 444555455555566666

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.13  E-value=6e-05  Score=64.50  Aligned_cols=179  Identities=11%  Similarity=-0.054  Sum_probs=100.0

Q ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccC----cceEEEEecCCCCCEEEEEeC------------
Q 046899          197 VEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHN----ADIHCVDWNPHDVNLILTGSA------------  260 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~l~~~~~~~~~l~tg~~------------  260 (407)
                      -..++|.+++ +.++++...+.|...|......  ........    ...+.+++++ ++++.++-..            
T Consensus        73 P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~~--~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          73 PAGCQCDRDA-NQLFVADMRLGLLVVQTDGTFE--EIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             EEEEEECSSS-SEEEEEETTTEEEEEETTSCEE--ECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTT
T ss_pred             ceeEEEeCCC-CEEEEEECCCeEEEEeCCCcEE--EEEeccccccccCCCcEEEECC-CCCEEEecCccCccccccccee
Confidence            4689999998 6666666667788888765431  11111111    1357789999 7887776422            


Q ss_pred             ---CCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCC----CEEEEeeCCCeEEEEeCCCCCcccccc---cC
Q 046899          261 ---DNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKS----SVFGSSAEDGILNIWDHEKIGEKQDYG---EL  330 (407)
Q Consensus       261 ---dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~----~ll~s~~~d~~i~vwd~~~~~~~~~~~---~~  330 (407)
                         .|.|..++..       ++..... ..-..-+.++|+|++.    .|+++-+..+.|..||+.....+....   ..
T Consensus       149 ~~~~G~v~~~~~d-------g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~  220 (314)
T d1pjxa_         149 QEKFGSIYCFTTD-------GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI  220 (314)
T ss_dssp             SSSCEEEEEECTT-------SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ccCCceEEEEeec-------CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc
Confidence               2334444432       2322222 2223457899998764    576677788999999877544332111   10


Q ss_pred             CCcccCCCCcCcchhccccceeeeeEeeCccceeeeEEEeeeEEEeeccccccCChHHHHHHHhhcccceeEeeccC
Q 046899          331 KYPIIHPAYSSDMLDIETKLLTSIGMHLIHGRLLVCLTMVKVLEIWRMIDLIYRPEEEVLAELDKFKSHIFGCDKSC  407 (407)
Q Consensus       331 ~~~v~~~~~s~d~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  407 (407)
                      ..   .....||-           ......++..++....+.|++||..      .++.+..+......+++++|.+
T Consensus       221 ~~---~~~~~pdG-----------iavD~~GnlyVa~~~~g~I~~~dp~------~g~~~~~i~~p~~~~t~~afg~  277 (314)
T d1pjxa_         221 PG---THEGGADG-----------MDFDEDNNLLVANWGSSHIEVFGPD------GGQPKMRIRCPFEKPSNLHFKP  277 (314)
T ss_dssp             CC---CSSCEEEE-----------EEEBTTCCEEEEEETTTEEEEECTT------CBSCSEEEECSSSCEEEEEECT
T ss_pred             cc---ccccccee-----------eEEecCCcEEEEEcCCCEEEEEeCC------CCEEEEEEECCCCCEEEEEEeC
Confidence            00   00111221           2222335544555556789999876      4444444555555677888753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.05  E-value=0.0012  Score=55.55  Aligned_cols=108  Identities=12%  Similarity=0.205  Sum_probs=79.2

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCC-----C-ceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEe
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST-----P-AVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFD  268 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~-~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd  268 (407)
                      ..-+.++|++++..++++-+..+.|..|++.....     . ..............++++. ++++.++.-..+.|..||
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEEC
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEec
Confidence            45678999999966777778889999998753221     0 1112223345578899999 888887777788999999


Q ss_pred             CCCCCCCCCCCceeeecCCCCCEEEEEEc-CCCCCEEEEeeCC
Q 046899          269 RRKLTSDGVGSPIHKFEGHSAAVLCVQWS-PDKSSVFGSSAED  310 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~ll~s~~~d  310 (407)
                      ..       ++.+..+..-...+++++|- ++.+.|++|....
T Consensus       227 p~-------G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         227 TD-------GNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  262 (295)
T ss_dssp             TT-------CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CC-------CcEeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence            65       68888887666679999995 7878888886643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.01  E-value=0.00098  Score=55.55  Aligned_cols=115  Identities=17%  Similarity=0.232  Sum_probs=84.5

Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeee--cccCcceEEEEecCCCCCEEEEEeC-CCcEEEEeC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE--KAHNADIHCVDWNPHDVNLILTGSA-DNSIHMFDR  269 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~tg~~-dg~i~vwd~  269 (407)
                      +......+++.+++ +++++....+.|++||.. ++  ....+  .+.......|++++ +++++++-.. ++.|.+|+.
T Consensus       155 ~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~-G~--~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE-GQ--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             TCSSEEEEEECSSS-EEEEEEGGGTEEEEEETT-CC--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT
T ss_pred             cccccceeeeccce-eEEeeeccccceeeeecC-Cc--eeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC
Confidence            44567788999988 888888889999999975 44  34333  23445578999999 8887776543 457999985


Q ss_pred             CCCCCCCCCCceeeecC--CCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCC
Q 046899          270 RKLTSDGVGSPIHKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKI  321 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~  321 (407)
                      .       ++.+.++..  .......|++.|+|. |++ ++.++.|++|.....
T Consensus       230 ~-------G~~~~~~~~~~~~~~p~~vav~~dG~-l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         230 D-------GQLISALESKVKHAQCFDVALMDDGS-VVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             T-------SCEEEEEEESSCCSCEEEEEEETTTE-EEE-EETTTEEEEEECSCC
T ss_pred             C-------CCEEEEEeCCCCCCCEeEEEEeCCCc-EEE-EeCCCeEEEEEeeee
Confidence            4       677776643  234578999999997 554 457899999998765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.84  E-value=0.0014  Score=55.09  Aligned_cols=215  Identities=12%  Similarity=0.039  Sum_probs=120.2

Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCCCCcEEEEeccccccccccCCCCCcccccCCCCCcc
Q 046899           88 RIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDLDQSVVLWSIQDHVSALAAEPGSAKSTASGGANSKN  167 (407)
Q Consensus        88 ~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (407)
                      +..|.+.++++..+--..+.|.-||..+++                  ..+|.+......+...       ..|    .+
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~------------------~~~~~~~~~~~~i~~~-------~dg----~l   72 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGR------------------KTVHALPFMGSALAKI-------SDS----KQ   72 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE------------------EEEEECSSCEEEEEEE-------ETT----EE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCe------------------EEEEECCCCcEEEEEe-------cCC----CE
Confidence            445777677777776667788888876542                  2333332211111110       111    11


Q ss_pred             ccccCCCCCCCCCCCCcCceeeEee----cccCEEEEEECCCCCcEEEEEeC----CCcEEEEEcCCCCCCceeeecccC
Q 046899          168 ASKSGGNGDKPLESPSIGARGKYLG----HEDTVEDVQFCPSSAQEFCSVGD----DSCLILWDARSGSTPAVKVEKAHN  239 (407)
Q Consensus       168 ~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~  239 (407)
                      ..++. ..+..+|..+++.......    ....++.+.+.|+| ++.++...    .+.-.+|.+..++  ..... ..-
T Consensus        73 ~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~-~~~  147 (295)
T d2ghsa1          73 LIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGK--VTKLF-ADI  147 (295)
T ss_dssp             EEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTE--EEEEE-EEE
T ss_pred             EEEEe-CccEEeecccceeeEEeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCCc--EEEEe-ecc
Confidence            22222 2355566665553322211    12367899999999 65555432    2345677776655  22222 223


Q ss_pred             cceEEEEecCCCCCE-EEEEeCCCcEEEEeCCCCCCCCCCC--ceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEE
Q 046899          240 ADIHCVDWNPHDVNL-ILTGSADNSIHMFDRRKLTSDGVGS--PIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIW  316 (407)
Q Consensus       240 ~~v~~l~~~~~~~~~-l~tg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vw  316 (407)
                      ...+.++|++ +++. +++-+..+.|..|++.........+  ....+.+..+....+++..+|. |.++.-..+.|..|
T Consensus       148 ~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~  225 (295)
T d2ghsa1         148 SIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRY  225 (295)
T ss_dssp             SSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEE
T ss_pred             CCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEe
Confidence            3467899999 6664 4565667899999875421100011  1122334455688999999998 55566667889999


Q ss_pred             eCCCCCcccccccCCCcccCCCC
Q 046899          317 DHEKIGEKQDYGELKYPIIHPAY  339 (407)
Q Consensus       317 d~~~~~~~~~~~~~~~~v~~~~~  339 (407)
                      |. .++.+..+.-....+++++|
T Consensus       226 dp-~G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         226 DT-DGNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             CT-TCCEEEEEECSCSBEEEEEE
T ss_pred             cC-CCcEeeEecCCCCceEEEEE
Confidence            95 45666666544344555555

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.61  E-value=0.014  Score=49.18  Aligned_cols=106  Identities=13%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             ccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCcee------eecccCcceEEEEecCCCCCEEEEEeCCCcEEEE
Q 046899          194 EDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVK------VEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF  267 (407)
Q Consensus       194 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  267 (407)
                      -...+.|+|+|++..++++-+..++|..||+.........      ...........+++++ ++++.++....+.|.+|
T Consensus       176 ~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~  254 (319)
T d2dg1a1         176 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVF  254 (319)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEE
T ss_pred             cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEE
Confidence            3456789999999556677777899999998754311110      0111122356799999 88988888889999999


Q ss_pred             eCCCCCCCCCCCceeeec------CCCCCEEEEEEcCCCCCEEEEe
Q 046899          268 DRRKLTSDGVGSPIHKFE------GHSAAVLCVQWSPDKSSVFGSS  307 (407)
Q Consensus       268 d~~~~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~ll~s~  307 (407)
                      |..       ++.+.++.      ++...+++++|.+++..++++.
T Consensus       255 ~p~-------G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         255 NKR-------GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             CTT-------SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCC-------CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            964       67777775      2445688999999887776554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.48  E-value=0.00088  Score=58.06  Aligned_cols=195  Identities=11%  Similarity=0.041  Sum_probs=107.3

Q ss_pred             ccCCCCCCCCCCCCcCceeeEee-cccCEEEEEECCCCC-cEEEEEeCC------------------CcEEEEEcCCCCC
Q 046899          170 KSGGNGDKPLESPSIGARGKYLG-HEDTVEDVQFCPSSA-QEFCSVGDD------------------SCLILWDARSGST  229 (407)
Q Consensus       170 ~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~-~~l~s~~~d------------------g~i~iwd~~~~~~  229 (407)
                      -..+..+.+.|+...+..+.... ....+..+...++.. .+++.++++                  +.+...|..+.+ 
T Consensus       106 Dkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~-  184 (459)
T d1fwxa2         106 DKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE-  184 (459)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTE-
T ss_pred             cCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCce-
Confidence            34556666778877776554432 234556666544321 456665553                  236678887766 


Q ss_pred             CceeeecccCcceEEEEecCCCCCEEEEEeCC--------------------------------------CcEEEEeCCC
Q 046899          230 PAVKVEKAHNADIHCVDWNPHDVNLILTGSAD--------------------------------------NSIHMFDRRK  271 (407)
Q Consensus       230 ~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d--------------------------------------g~i~vwd~~~  271 (407)
                       ...... -......+++++ +++++++.+.+                                      +.+.+-|.+.
T Consensus       185 -V~~QV~-V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~  261 (459)
T d1fwxa2         185 -VAWQVL-VSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK  261 (459)
T ss_dssp             -EEEEEE-ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred             -EEEEee-eCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccc
Confidence             232222 233456788999 88888776643                                      2234444443


Q ss_pred             CCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccccCCCcccCCCCcCcchhccccce
Q 046899          272 LTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGELKYPIIHPAYSSDMLDIETKLL  351 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~  351 (407)
                      ...   ...++.+...+ ....+..+|||+++++++..+.++.|+|+++......  ....+-..+.--+   .+-.|-+
T Consensus       262 ~~~---~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~--~~~~~~~~~~~e~---elglgPL  332 (459)
T d1fwxa2         262 EAS---SLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY--ENADPRSAVVAEP---ELGLGPL  332 (459)
T ss_dssp             G-----CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH--SCC-GGGGEEECC---BCCSCEE
T ss_pred             cCC---cceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc--ccCCccccEEeec---ccCcCcc
Confidence            110   12333333222 3467899999999999999999999999986543321  1000000000000   0011112


Q ss_pred             eeeeEeeCccceeeeEEEeeeEEEeecc
Q 046899          352 TSIGMHLIHGRLLVCLTMVKVLEIWRMI  379 (407)
Q Consensus       352 ~~~~~~~~~~~~i~~~~~d~~i~iwd~~  379 (407)
                      +  -.+.+.+....+.-.|+.|--|++.
T Consensus       333 h--t~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         333 H--TAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             E--EEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             c--cccCCCceEEEEeeccceEEEEecc
Confidence            2  2334445556666789999999985

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00031  Score=63.47  Aligned_cols=141  Identities=13%  Similarity=0.158  Sum_probs=86.5

Q ss_pred             cccCCCCCCCCCCCCcCceeeEeec---ccCEEEEEECCCCCcEEEEE---------eCCCcEEEEEcCCCCCCceeeec
Q 046899          169 SKSGGNGDKPLESPSIGARGKYLGH---EDTVEDVQFCPSSAQEFCSV---------GDDSCLILWDARSGSTPAVKVEK  236 (407)
Q Consensus       169 ~~~~~~~i~i~d~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~  236 (407)
                      ....+|.+.++|..+++....+...   ...+....|+|++ +.++..         +..+.+.++|+.++....+....
T Consensus        32 ~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~  110 (465)
T d1xfda1          32 YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE  110 (465)
T ss_dssp             CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT
T ss_pred             EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCC-CeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc
Confidence            3445667777887776654333322   2356778899999 555444         23578899999988732222222


Q ss_pred             ccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeec-CCCCC-----------------EEEEEEcC
Q 046899          237 AHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFE-GHSAA-----------------VLCVQWSP  298 (407)
Q Consensus       237 ~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~-~h~~~-----------------v~~v~~~~  298 (407)
                      .....+....|+| +|+.+|-.. ++.|.+.+...      +..++... +....                 -..+.|||
T Consensus       111 ~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~------~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         111 VSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVG------KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             CCSCCCSBCCBCS-STTCEEEEE-TTEEEEESSSS------SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             CCccccceeeecc-CCceEEEEe-cceEEEEecCC------CceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            3344566688999 888887765 66788888765      33333222 11111                 25678999


Q ss_pred             CCCCEEEEeeCCCeEEEEeC
Q 046899          299 DKSSVFGSSAEDGILNIWDH  318 (407)
Q Consensus       299 ~~~~ll~s~~~d~~i~vwd~  318 (407)
                      ||++|+..--.+..|..+.+
T Consensus       183 Dgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         183 DGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             TSSEEEEEEEECTTSCEEEE
T ss_pred             CCCeEEEEEecccccceeec
Confidence            99988544445555655544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00033  Score=63.30  Aligned_cols=116  Identities=9%  Similarity=0.111  Sum_probs=75.3

Q ss_pred             EECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecc-cCcceEEEEecCCCCCEEEEEe---------CCCcEEEEeCC
Q 046899          201 QFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKA-HNADIHCVDWNPHDVNLILTGS---------ADNSIHMFDRR  270 (407)
Q Consensus       201 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~tg~---------~dg~i~vwd~~  270 (407)
                      .|.+++ .++. -..+|.|.+||+.+++...+..... ....+....|+| |+++++...         ..+.+.++|+.
T Consensus        23 ~W~~~~-~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          23 KWISDT-EFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CBSSSS-CBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             EEeCCC-cEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            577776 4443 3567899999999887322221111 223567788999 888887763         35778999998


Q ss_pred             CCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccc
Q 046899          271 KLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQ  325 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~  325 (407)
                      +..    ..++.........+....|||+|++|. -.. ++.|.+.+...+...+
T Consensus       100 ~~~----~~~l~~~~~~~~~l~~~~wSPDG~~ia-fv~-~~nl~~~~~~~~~~~~  148 (465)
T d1xfda1         100 HGD----PQSLDPPEVSNAKLQYAGWGPKGQQLI-FIF-ENNIYYCAHVGKQAIR  148 (465)
T ss_dssp             SCC----CEECCCTTCCSCCCSBCCBCSSTTCEE-EEE-TTEEEEESSSSSCCEE
T ss_pred             CCc----eeeccCccCCccccceeeeccCCceEE-EEe-cceEEEEecCCCceEE
Confidence            721    122222233345566789999999873 443 7889999887765543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.039  Score=44.96  Aligned_cols=206  Identities=6%  Similarity=-0.035  Sum_probs=112.0

Q ss_pred             CCCceEEEEEeCCCCeEEEEeeCCCcEEEEeCcCCCCcccccCcCCCCCCC-----CCcEEEEeccccccccccCCCCCc
Q 046899           82 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAADSHPDL-----DQSVVLWSIQDHVSALAAEPGSAK  156 (407)
Q Consensus        82 h~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----d~~i~~w~~~~~~~~~~~~~~~~~  156 (407)
                      +...+.+|+|.+.++.+..+-..++.|+..++........+.........+     .+.+..-+                
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d----------------   97 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD----------------   97 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEE----------------
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEec----------------
Confidence            445688899998677777776777889888887654332221110100000     11111111                


Q ss_pred             ccccCCCCCccccccCCCCCCCCCCCCcCceeeEeecccCEEEEEECCCCCcEEEEEeCCCcEEEE--EcCCCCCCceee
Q 046899          157 STASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILW--DARSGSTPAVKV  234 (407)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~  234 (407)
                                    ...+.|.+.++..................++++|....++.+-...+..+|+  ++....  ....
T Consensus        98 --------------~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~--~~~i  161 (263)
T d1npea_          98 --------------SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRIL  161 (263)
T ss_dssp             --------------TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEE
T ss_pred             --------------cCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC--ceee
Confidence                          1112222222222221111222235678999999875555554333333444  554333  2222


Q ss_pred             ecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEE
Q 046899          235 EKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN  314 (407)
Q Consensus       235 ~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~  314 (407)
                      ....-....+|++++.++++..+-...+.|...|+..      ......+.+-. ...+|++.  +.+|+.+-...+.|.
T Consensus       162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g------~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~  232 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ------PGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVI  232 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE------EEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC------CCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEE
Confidence            2233345688999983444445545678899999875      23323333322 34688885  455777777789999


Q ss_pred             EEeCCCCCcccccc
Q 046899          315 IWDHEKIGEKQDYG  328 (407)
Q Consensus       315 vwd~~~~~~~~~~~  328 (407)
                      ..|..+++....+.
T Consensus       233 ~~~~~~g~~~~~~~  246 (263)
T d1npea_         233 AMDLAISKEMDTFH  246 (263)
T ss_dssp             EEETTTTEEEEEEC
T ss_pred             EEECCCCccceEEC
Confidence            99998877665543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.08  Score=42.97  Aligned_cols=123  Identities=6%  Similarity=-0.011  Sum_probs=78.9

Q ss_pred             EeecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 046899          190 YLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDR  269 (407)
Q Consensus       190 ~~~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~  269 (407)
                      +..+...+..|+|++....++.+-..++.|...++....  ...........+.+++++...+++..+-...+.|.+.++
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEec
Confidence            334455678899998775666666778889999987665  233333333567888887634555556666789999998


Q ss_pred             CCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCe--EEEEeCCC
Q 046899          270 RKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGI--LNIWDHEK  320 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~--i~vwd~~~  320 (407)
                      ..      ......+...-..+..++++|...+++.+-...+.  |.--++..
T Consensus       109 dg------~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG  155 (263)
T d1npea_         109 DG------TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (263)
T ss_dssp             TS------CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CC------ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC
Confidence            75      33222233333578999999988878766433333  44445543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.21  Score=40.43  Aligned_cols=119  Identities=5%  Similarity=-0.074  Sum_probs=80.9

Q ss_pred             cCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEE-eCCCcEEEEeCCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTG-SADNSIHMFDRRKLT  273 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg-~~dg~i~vwd~~~~~  273 (407)
                      ..+..|++.+.+.++..+-...++|.+.++....  ..............++.+|..+.++.+. +..+.|.-.++..  
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~--~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--  152 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--  152 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCce--EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--
Confidence            3455788877665777777778899999988655  3333444556678999999455555443 2345677777654  


Q ss_pred             CCCCCCceeeec-CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCC
Q 046899          274 SDGVGSPIHKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIG  322 (407)
Q Consensus       274 ~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~  322 (407)
                           .....+. ..-.....+++.+.+..|+.+-...+.|...|+....
T Consensus       153 -----s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         153 -----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             -----CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             -----CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence                 3344443 2335678999999888888777778899999987543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.97  E-value=0.032  Score=45.39  Aligned_cols=92  Identities=15%  Similarity=0.182  Sum_probs=59.3

Q ss_pred             ECCC--CCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeC-CC-----cEEEEeCCCCC
Q 046899          202 FCPS--SAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSA-DN-----SIHMFDRRKLT  273 (407)
Q Consensus       202 ~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~-dg-----~i~vwd~~~~~  273 (407)
                      .+|+  | +.++-.+ ++.|.+.|+..++   ...+..+.+.+...+|+| ||+.||.... ++     .|.+++...  
T Consensus         6 ~sPdi~G-~~v~f~~-~~dl~~~d~~~g~---~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~--   77 (281)
T d1k32a2           6 LNPDIHG-DRIIFVC-CDDLWEHDLKSGS---TRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGEN--   77 (281)
T ss_dssp             EEEEEET-TEEEEEE-TTEEEEEETTTCC---EEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTT--
T ss_pred             cCCCCCC-CEEEEEe-CCcEEEEECCCCC---EEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecC--
Confidence            4577  7 4555444 4678888998777   345566777888999999 8888875432 22     366677665  


Q ss_pred             CCCCCCceeeecCC-------CCCEEEEEEcCCCCCEEEE
Q 046899          274 SDGVGSPIHKFEGH-------SAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       274 ~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~ll~s  306 (407)
                          ++. ..+..+       .......+|+|+|+.|+.+
T Consensus        78 ----g~~-~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          78 ----GEI-KRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             ----TEE-EECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             ----Cce-EEeeecCCCccCccccccccccCCCCCEEEEE
Confidence                332 233221       2345678899999976533

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.86  E-value=0.064  Score=43.46  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             eEEEeeCCCceEEEEEeCCCCeEEEEe
Q 046899           76 KFKTIIHPGEVNRIRELPQNSKIVATH  102 (407)
Q Consensus        76 ~~~~~~h~~~v~~l~~~~~~~~~l~tg  102 (407)
                      ..++..+.+.+...+|+| +|+.||-.
T Consensus        33 ~~~Lt~~~~~~~~p~~SP-DG~~iaf~   58 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFP-DGRKIAIR   58 (281)
T ss_dssp             EEEEECSSSEEEEEEECT-TSSEEEEE
T ss_pred             EEEEecCCCcccCEEECC-CCCEEEEE
Confidence            344556788899999999 77777754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.74  Score=36.96  Aligned_cols=126  Identities=9%  Similarity=-0.073  Sum_probs=75.5

Q ss_pred             cCEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCC
Q 046899          195 DTVEDVQFCPSSAQEFCSVG-DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLT  273 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~  273 (407)
                      .....|+.+|....++.+-. ..+.|.-.++....  ........-....++++++.++++..+-...+.|...|+....
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~--~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccCCCc--eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            44677888886535555532 34566666665443  2223223335678999998444455555667899999987511


Q ss_pred             CCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          274 SDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                          ...+......-....+|++.  +.+|+.+-..++.|...+..+++....+.
T Consensus       198 ----~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         198 ----RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             ----CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             ----EEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence                12222222223446778876  34577777778899888888766555443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.82  E-value=0.79  Score=37.20  Aligned_cols=129  Identities=10%  Similarity=0.046  Sum_probs=76.7

Q ss_pred             CEEEEEECCCCCcEEEEEe-------CCCcEEEEEcCCCCCCceeeecccCcceEEEEecC--CCCCEEEEE---eCCCc
Q 046899          196 TVEDVQFCPSSAQEFCSVG-------DDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNP--HDVNLILTG---SADNS  263 (407)
Q Consensus       196 ~v~~l~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~l~tg---~~dg~  263 (407)
                      .|-.-..+++. ++++..+       -.|.+.+|..+...   .+.+++|.+....+...-  ....+|+.+   ...+.
T Consensus       149 QIInY~~d~~~-kW~~l~GI~~~~~~i~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~k  224 (327)
T d1utca2         149 QIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  224 (327)
T ss_dssp             EEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTE---EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEE
T ss_pred             eEEEEEECCCC-CEEEEEeEecCCCceeEEEEEEEeccCc---CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcE
Confidence            55556666766 4443332       13778999987654   667778876665555432  112233333   22368


Q ss_pred             EEEEeCCCCCCCCCC--Cceeeec----CCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          264 IHMFDRRKLTSDGVG--SPIHKFE----GHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       264 i~vwd~~~~~~~~~~--~~~~~~~----~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                      +.+.++..+......  +....+.    .-.+-..++..++....+ ..-+.-|.|.+||++++.++-.-.-
T Consensus       225 LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygii-yviTK~G~i~lyDleTgt~i~~nRI  295 (327)
T d1utca2         225 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-FLITKYGYIHLYDLETGTCIYMNRI  295 (327)
T ss_dssp             EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEE-EEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEE-EEEecCcEEEEEEcccccEEEEeec
Confidence            999998774321111  1111121    123456688888877744 4778899999999999887755433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.25  E-value=0.64  Score=39.34  Aligned_cols=115  Identities=12%  Similarity=0.099  Sum_probs=69.3

Q ss_pred             EEEECCCCCcEEEEEeCCC-----------cEEEEEcCCCCCCceeee-cccCcceEEEEecCCCCCEEEEEeCC-CcEE
Q 046899          199 DVQFCPSSAQEFCSVGDDS-----------CLILWDARSGSTPAVKVE-KAHNADIHCVDWNPHDVNLILTGSAD-NSIH  265 (407)
Q Consensus       199 ~l~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~tg~~d-g~i~  265 (407)
                      ......++ ++++.|+.+.           .+.+||..+++....... ..+.....+.++.+ ++.+++.|+.+ ..+.
T Consensus        24 ~a~~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          24 AAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred             EEEEeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCccee
Confidence            33344556 7777777421           377999998874322221 22333334567778 88999988766 5899


Q ss_pred             EEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCC------CeEEEEeCCCC
Q 046899          266 MFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAED------GILNIWDHEKI  321 (407)
Q Consensus       266 vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d------~~i~vwd~~~~  321 (407)
                      +||..+..    ......+.... .-..++..++|+ +++.|+.+      ..+.+||+.+.
T Consensus       102 ~yd~~~~~----w~~~~~~~~~r-~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         102 LYDSSSDS----WIPGPDMQVAR-GYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEEGGGTE----EEECCCCSSCC-SSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             EecCccCc----ccccccccccc-cccceeeecCCc-eeeeccccccccccceeeeecCCCC
Confidence            99988732    22222222222 224566777888 55577643      46899998874

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.77  E-value=0.71  Score=40.07  Aligned_cols=111  Identities=13%  Similarity=0.132  Sum_probs=65.1

Q ss_pred             EEEEEECCCCCcEEEEEeCCC----cEEEEEcCCCCCCcee-eecccCcceEEEEecCCCCCEEEEEeCC----------
Q 046899          197 VEDVQFCPSSAQEFCSVGDDS----CLILWDARSGSTPAVK-VEKAHNADIHCVDWNPHDVNLILTGSAD----------  261 (407)
Q Consensus       197 v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~tg~~d----------  261 (407)
                      +..++++|++..++++-+.+|    .|+++|+.+++.  +. .+.  ......+.|.+ ++..|+-...+          
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~--~~~~i~--~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE--LPDVLE--RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE--EEEEEE--EECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCccee--cccccc--cccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence            445678999954444544444    699999999872  22 221  12224688999 66665533222          


Q ss_pred             ------CcEEEEeCCCCCCCCCCCceeeecC--CCCCEEEEEEcCCCCCEEEEeeC--CCeEEEE
Q 046899          262 ------NSIHMFDRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSPDKSSVFGSSAE--DGILNIW  316 (407)
Q Consensus       262 ------g~i~vwd~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~ll~s~~~--d~~i~vw  316 (407)
                            ..|..+.+.+..    ......+..  ....+..+..++++++++++...  +....+|
T Consensus       202 ~~~~~~~~v~~h~lgt~~----~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~  262 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQ----SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW  262 (430)
T ss_dssp             CCCCCCCEEEEEETTSCG----GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred             cccCCcceEEEEECCCCc----cccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence                  257777777633    222333333  33457788899999998755432  3344444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.72  E-value=0.97  Score=38.13  Aligned_cols=71  Identities=13%  Similarity=0.062  Sum_probs=45.5

Q ss_pred             EEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCC------CcEEEEeCC
Q 046899          198 EDVQFCPSSAQEFCSVGDD-SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSAD------NSIHMFDRR  270 (407)
Q Consensus       198 ~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~d------g~i~vwd~~  270 (407)
                      ...++.+++ .+++.|+.+ ..+.+||..+.......... ....-.+.+..+ ++++++.|+.+      ..+.+||..
T Consensus        79 ~~~~~~~~g-~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          79 PGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ-VARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             CEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEEECCCCS-SCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             eEEEEecCC-cEEEeecCCCcceeEecCccCccccccccc-ccccccceeeec-CCceeeeccccccccccceeeeecCC
Confidence            355677888 778877655 58999999877631111111 112223455566 78888888753      358899987


Q ss_pred             C
Q 046899          271 K  271 (407)
Q Consensus       271 ~  271 (407)
                      +
T Consensus       156 ~  156 (387)
T d1k3ia3         156 S  156 (387)
T ss_dssp             T
T ss_pred             C
Confidence            6

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.61  E-value=2.8  Score=37.70  Aligned_cols=28  Identities=21%  Similarity=0.265  Sum_probs=22.2

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCCcccccc
Q 046899          300 KSSVFGSSAEDGILNIWDHEKIGEKQDYG  328 (407)
Q Consensus       300 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  328 (407)
                      +..+| .|+.|+.++.+|.++++.+-++.
T Consensus       475 gglVf-~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         475 GGLVW-YATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TTEEE-EECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEE-EECCCCeEEEEECCCCcEEEEEE
Confidence            44354 79999999999999999885554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.42  E-value=0.31  Score=41.93  Aligned_cols=94  Identities=13%  Similarity=0.047  Sum_probs=61.1

Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCCCCceeeecccCcceEEEEec--CCCCCEEEEEeCCC------------------cE
Q 046899          205 SSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWN--PHDVNLILTGSADN------------------SI  264 (407)
Q Consensus       205 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~~l~tg~~dg------------------~i  264 (407)
                      +|..+|+.-..+++|.+-|+++.+...+... .....+..+...  | +..+++.++.+.                  .+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p-~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCC-CeEEEEccCccccccCCCCccccchhhcceEE
Confidence            6745566666789999999998873222222 334455666553  4 455666665532                  35


Q ss_pred             EEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEe
Q 046899          265 HMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSS  307 (407)
Q Consensus       265 ~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~  307 (407)
                      .++|..+      .+....+.. ......++++++|+++++++
T Consensus       176 t~ID~~t------m~V~~QV~V-~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         176 TAVDADK------WEVAWQVLV-SGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEEETTT------TEEEEEEEE-SSCCCCEEECSSSSEEEEEE
T ss_pred             EEEecCC------ceEEEEeee-CCChhccccCCCCCEEEEEe
Confidence            6788887      566655543 23467899999999998766

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.39  E-value=2.5  Score=35.07  Aligned_cols=103  Identities=11%  Similarity=0.144  Sum_probs=58.0

Q ss_pred             cCEEEEEECCCCCcEEEEEeC---------------CCcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEE-EE
Q 046899          195 DTVEDVQFCPSSAQEFCSVGD---------------DSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLIL-TG  258 (407)
Q Consensus       195 ~~v~~l~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-tg  258 (407)
                      ...+.+.+..++ .+++|-..               -+...+|....+.   .......-...+.|+++| ++++|+ +-
T Consensus       150 ~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~---~~~~~~~l~~pNGI~~s~-d~~~lyVa~  224 (340)
T d1v04a_         150 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND---VRVVAEGFDFANGINISP-DGKYVYIAE  224 (340)
T ss_dssp             SSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC---EEEEEEEESSEEEEEECT-TSSEEEEEE
T ss_pred             cCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc---eEEEcCCCCccceeEECC-CCCEEEEEe
Confidence            456788888877 66666211               1233444444433   222223345678999999 766554 45


Q ss_pred             eCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEE
Q 046899          259 SADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGS  306 (407)
Q Consensus       259 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s  306 (407)
                      +..+.|+.|++.....   ......+. -....-.+.+.+.+..+.+.
T Consensus       225 t~~~~i~~y~~~~~~~---l~~~~~~~-l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         225 LLAHKIHVYEKHANWT---LTPLRVLS-FDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             GGGTEEEEEEECTTSC---EEEEEEEE-CSSEEEEEEECTTTCCEEEE
T ss_pred             CCCCeEEEEEeCCCcc---cceEEEec-CCCCCCccEEecCCCEEEEE
Confidence            5678999999876221   12222222 24456778887644445433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.46  E-value=3.6  Score=33.22  Aligned_cols=133  Identities=11%  Similarity=0.119  Sum_probs=82.2

Q ss_pred             CCCCCCCCCCcCceeeEeecccCEEEEEECC--CCCcEEEEEe---CCCcEEEEEcCCCC---CCc-eee--e----ccc
Q 046899          174 NGDKPLESPSIGARGKYLGHEDTVEDVQFCP--SSAQEFCSVG---DDSCLILWDARSGS---TPA-VKV--E----KAH  238 (407)
Q Consensus       174 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~l~s~~---~dg~i~iwd~~~~~---~~~-~~~--~----~~~  238 (407)
                      |.+.++..+. +.-+.+.+|-.....+...-  ....+|+-+.   ..+++++-++....   .+. .+.  +    ...
T Consensus       176 G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~  254 (327)
T d1utca2         176 GAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  254 (327)
T ss_dssp             EEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCT
T ss_pred             EEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcccc
Confidence            4444554433 33456667766555554432  1113444332   24789999987632   111 011  1    122


Q ss_pred             CcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEE
Q 046899          239 NADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNI  315 (407)
Q Consensus       239 ~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~v  315 (407)
                      .+-..++..++ ....+..-+.-|.|.+||+.+      +.++..-+-...+|..-+-+.+...++ +-..+|.|..
T Consensus       255 ~DFPvamqvs~-kygiiyviTK~G~i~lyDleT------gt~i~~nRIs~~~iF~~a~~~~~~Gi~-~VNr~GqVl~  323 (327)
T d1utca2         255 NDFPVAMQISE-KHDVVFLITKYGYIHLYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLS  323 (327)
T ss_dssp             TCCEEEEEEET-TTTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEEETTTTEEE-EEETTSEEEE
T ss_pred             CCcEEEEEeec-cCCEEEEEecCcEEEEEEccc------ccEEEEeecCCCceEEeccCCCCceEE-EECCCCeEEE
Confidence            34456788888 778888889999999999999      888888777677887666666655565 5556777653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.22  E-value=4.3  Score=33.71  Aligned_cols=129  Identities=12%  Similarity=0.159  Sum_probs=78.7

Q ss_pred             CEEEEEE--CCCCC-cEEEEEeCCCcEEEEEcCCCCC-----CceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEE
Q 046899          196 TVEDVQF--CPSSA-QEFCSVGDDSCLILWDARSGST-----PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMF  267 (407)
Q Consensus       196 ~v~~l~~--~~~~~-~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vw  267 (407)
                      .+..+|+  +|... .+++....+|.+..|.+.....     ..++.+ .....+-.+.+++ ....|+.+-.+.-|..+
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvDd-e~~~LyisEE~~Giw~~  206 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAADD-EYGSLYIAEEDEAIWKF  206 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEeC-CCCcEEEecCccceEEE
Confidence            3556665  66542 3566777789999887743221     122222 3456788899998 77788888877767666


Q ss_pred             eCCCCCCCCCCCceeeecC--CCCCEEEEEEcC--CC-CCEEEEeeCCCeEEEEeCCCC-Cccccc
Q 046899          268 DRRKLTSDGVGSPIHKFEG--HSAAVLCVQWSP--DK-SSVFGSSAEDGILNIWDHEKI-GEKQDY  327 (407)
Q Consensus       268 d~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~--~~-~~ll~s~~~d~~i~vwd~~~~-~~~~~~  327 (407)
                      +...... .....+....+  ..+-+..|+.-.  ++ .||+||.-.+++..+||.... +.+..|
T Consensus       207 ~a~~~~~-~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         207 SAEPDGG-SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             ESSTTSC-SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EeccCCC-ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            6653211 00222222222  355677777543  33 388888888999999998764 334343

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=85.88  E-value=2.6  Score=37.85  Aligned_cols=60  Identities=13%  Similarity=0.109  Sum_probs=36.1

Q ss_pred             CcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          262 NSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       262 g~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                      |.+.-+|+.+      ++.+.+... ..+..+-.+.-.+..+| .|+.||.++.+|.++++.+=++.-
T Consensus       438 G~l~A~D~~t------Gk~~W~~~~-~~~~~gg~l~TagglVF-~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVK------QKAAWKVPY-PTHWNGGTLSTAGNLVF-QGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTT------TEEEEEEEE-SSSCCCCEEEETTTEEE-EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCC------CeEeeeccC-CCCCCCceeEECCCEEE-EECCCCcEEEEECCCCcEeEEEEC
Confidence            3456666666      565555432 11111111222344354 789999999999999998865543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.61  E-value=3.5  Score=37.06  Aligned_cols=30  Identities=17%  Similarity=0.154  Sum_probs=23.7

Q ss_pred             CCCCEEEEeeCCCeEEEEeCCCCCccccccc
Q 046899          299 DKSSVFGSSAEDGILNIWDHEKIGEKQDYGE  329 (407)
Q Consensus       299 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  329 (407)
                      .+..+| +|+.|+.++.+|.++++.+-++.-
T Consensus       487 agglVF-~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         487 AGNVVF-QGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             TTTEEE-EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCEEE-EECCCCeEEEEECCCCcEeEEEEC
Confidence            455454 788999999999999999866653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.33  E-value=13  Score=31.93  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=38.1

Q ss_pred             cccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceeeec------ccCcceEEEEecC
Q 046899          193 HEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEK------AHNADIHCVDWNP  249 (407)
Q Consensus       193 ~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~l~~~~  249 (407)
                      .-..-++|+|.|++ ++|++--..|.|++++..++....+..+.      .-......|+++|
T Consensus        25 ~L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          25 NLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            34567899999999 77776645799999988776632222211      1134578899998

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.70  E-value=2.8  Score=37.79  Aligned_cols=73  Identities=27%  Similarity=0.424  Sum_probs=46.7

Q ss_pred             CcEEEEEcCCCCCCceeeecccCcceEEEEecCCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCceeeecC----CCCCEE
Q 046899          217 SCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEG----HSAAVL  292 (407)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----h~~~v~  292 (407)
                      |.|.-+|+.+++  ........ .++.+-..+. .+.++++|+.||.++.+|.++      ++.+.+++.    +..+  
T Consensus       466 G~l~AiD~~TG~--i~W~~~~~-~p~~~g~lst-agglVF~Gt~dg~l~A~Da~T------Ge~LW~~~~~~~~~~~P--  533 (582)
T d1flga_         466 GSLRAMDPVSGK--VVWEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKS------GKELWKFQTGSGIVSPP--  533 (582)
T ss_dssp             EEEEEECTTTCC--EEEEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCC--
T ss_pred             CeEEEEcCCCCc--EEeecCCC-CCCccceeEE-cCCeEEEeCCCCeEEEEECCC------CcEeEEEECCCCccccC--
Confidence            567778888877  34333222 2222111122 456888899999999999999      999988874    2233  


Q ss_pred             EEEEcCCCCC
Q 046899          293 CVQWSPDKSS  302 (407)
Q Consensus       293 ~v~~~~~~~~  302 (407)
                       +.|..+|++
T Consensus       534 -~ty~~~G~q  542 (582)
T d1flga_         534 -ITWEQDGEQ  542 (582)
T ss_dssp             -EEEEETTEE
T ss_pred             -EEEEECCEE
Confidence             455567854

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=82.41  E-value=12  Score=30.79  Aligned_cols=112  Identities=8%  Similarity=0.030  Sum_probs=68.1

Q ss_pred             CCCCCcEEEEEe---CCCcEEEEEcCCCCCCce--eeec-ccCcceEEEEecCCCCCEEEEEe-----------------
Q 046899          203 CPSSAQEFCSVG---DDSCLILWDARSGSTPAV--KVEK-AHNADIHCVDWNPHDVNLILTGS-----------------  259 (407)
Q Consensus       203 ~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~--~~~~-~~~~~v~~l~~~~~~~~~l~tg~-----------------  259 (407)
                      .+++..+|++..   ...+|.+|++........  .... ......+.+.+.. ++.+++|-.                 
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~  185 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGL  185 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcC
Confidence            455544565554   356799999876542111  1111 1123467888877 777777731                 


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCEEEEeeCCCeEEEEeCCCCCcc
Q 046899          260 ADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGEK  324 (407)
Q Consensus       260 ~dg~i~vwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  324 (407)
                      .-|.+..||...         .......-...+.|+++|++++|+++-+..+.|+.|++...+.+
T Consensus       186 ~~g~v~~~~~~~---------~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         186 AWSFVTYYSPND---------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             CCEEEEEECSSC---------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceeEEEEcCCc---------eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCccc
Confidence            122344444332         22222223457999999999999989999999999999865433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.74  E-value=7.4  Score=32.63  Aligned_cols=101  Identities=11%  Similarity=-0.003  Sum_probs=59.0

Q ss_pred             ecccCEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCCCceee---ecccCcceEEEEecCCCCCEEEEEeCCCcEEEE-
Q 046899          192 GHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKV---EKAHNADIHCVDWNPHDVNLILTGSADNSIHMF-  267 (407)
Q Consensus       192 ~~~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~l~tg~~dg~i~vw-  267 (407)
                      .-..++..+.++|.   .++....++.+-++++..+.......   ...-.+.+.+++|++ ++..++++..++ ..+- 
T Consensus       123 ~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~~-~q~k~  197 (381)
T d1xipa_         123 SFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWRNGE-MEKQF  197 (381)
T ss_dssp             ECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEEEEETTE-EEEEE
T ss_pred             cccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEEEEeCCCc-eeecc
Confidence            34567888998884   46667778999999998876211110   011235678888888 777777764332 2221 


Q ss_pred             eCCCCCCCCCCCceeeecCCCCCEEEEEEcCCCCCE
Q 046899          268 DRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPDKSSV  303 (407)
Q Consensus       268 d~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  303 (407)
                      ++..      ...+.........|.+|.|-.+..++
T Consensus       198 ~i~~------~~~~~~p~~~~~~v~sI~WL~~~~F~  227 (381)
T d1xipa_         198 EFSL------PSELEELPVEEYSPLSVTILSPQDFL  227 (381)
T ss_dssp             EECC------CHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred             CCCC------ccccCCCcCCCcceeEEEEecCceEE
Confidence            2222      11111111234568899998766543