Citrus Sinensis ID: 046976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcccEEEEEEcccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHcccEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHcccEEEEc
Coil and Loop (DISEMBL)
mgsslllpatsvtgvkwsrvqvkgprfhvrasldtnvsdmsvnapkglflpepehyrgpklKVAIIGAGLAGMSTAVELLDhghevlli
Flexible Loop (DISEMBL)
mgsslllpatsvtgvkwsrvqvkgprfhvrasldtnvsdmsvnaPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDhghevlli
Low Complexity Region (SEG)
MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI
Disordered region (IsUnstruct)
********ATSVTGVKWSRVQVKGPRFHVRASLDTNV****VNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV***
Disordered Region (DISOPRED)
*******************************************A***LFLP*P*HYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI
Disordered Region (DISEMBL)
MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI
Disordered Region (DISPRO)
*********************VKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
O49901	574	Zeta-carotene desaturase,	N/A	no	0.966	0.149	0.677	3e-26
Q38893	558	Zeta-carotene desaturase,	yes	no	0.921	0.146	0.674	5e-24
Q9FV46	587	Zeta-carotene desaturase,	N/A	no	0.898	0.136	0.595	7e-24
Q9SE20	588	Zeta-carotene desaturase,	N/A	no	0.651	0.098	0.879	2e-23
Q9SMJ3	588	Zeta-carotene desaturase,	N/A	no	0.696	0.105	0.822	3e-23
Q9ZTP4	570	Zeta-carotene desaturase,	N/A	no	0.460	0.071	0.926	7e-15
P74306	489	Zeta-carotene desaturase	N/A	no	0.314	0.057	0.75	3e-05

>sp|O49901|ZDS_NARPS Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 69/90 (76%), Gaps = 4/90 (4%)

Query: 1  MGSSLLLPATSVTGVKWSRVQ----VKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHY 56
          M SS  L  +S  GV   +V+    ++   F +R++LDT VSDMSVNAPKGLF PEPEHY
Sbjct: 1  MASSTCLIHSSSFGVGGKKVKMNTMIRSKLFSIRSALDTKVSDMSVNAPKGLFPPEPEHY 60

Query: 57 RGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
          RGPKLKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 61 RGPKLKVAIIGAGLAGMSTAVELLDQGHEV 90

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
Narcissus pseudonarcissus (taxid: 39639)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 6

>sp|Q38893|ZDS_ARATH Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=1 SV=3

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 66/86 (76%), Gaps = 4/86 (4%)

Query: 1  MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPK 60
          M SS++  AT    V      +K  RF+V +SLD++VSDMSVNAPKGLF PEP  Y+GPK
Sbjct: 1  MASSVVFAATGSLSVP----PLKSRRFYVNSSLDSDVSDMSVNAPKGLFPPEPVPYKGPK 56

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
          LKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 57 LKVAIIGAGLAGMSTAVELLDQGHEV 82

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. Shows stereoselectivity toward trans C15-C15'zeta-carotene double bond. The zeta-carotene produced by the phytoene desaturase PDS has a C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS. The main product is 7,9,7',9'-tetra-cis-lycopene (pro-lycopene).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9FV46|ZDS_TARER Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 66/99 (66%), Gaps = 19/99 (19%)

Query: 5   LLLPATSVTGVKWS-----------------RVQVKGPRFHVRASLDTNVSDMSVNAPKG 47
           L  PATS  G + S                 R++V+  +  VR+ LD +VSDM  NAPKG
Sbjct: 12  LCFPATSAAGARTSFRTTDTFLRYRRSRQLTRLKVR--KAVVRSDLDRDVSDMRTNAPKG 69

Query: 48  LFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
           LF PEPEHYRGPKLKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 70  LFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEV 108

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Tagetes erecta (taxid: 13708)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9SE20|ZDS_SOLLC Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 53/58 (91%)

Query: 29  VRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
           +RA LD+ VSDMS NAPKGLF PEPEHYRGPKLKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 48  IRADLDSMVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEV 105

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9SMJ3|ZDS_CAPAN Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 55/62 (88%)

Query: 25  PRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGH 84
           P+  +RA L++ VSDMS NAPKGLF PEPEHYRGPKLKVAIIGAGLAGMSTAVELLD GH
Sbjct: 44  PKSVIRADLNSMVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGH 103

Query: 85  EV 86
           EV
Sbjct: 104 EV 105

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. Shows stereoselectivity toward trans C15-C15'zeta-carotene double bond. The zeta-carotene produced by the phytoene desaturase PDS has a C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS. No activity with all-trans-zeta-carotene. The main product is 7,9,7',9'-tetra-cis-lycopene (pro-lycopene).

Capsicum annuum (taxid: 4072)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9ZTP4|ZDS_MAIZE Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/41 (92%), Positives = 38/41 (92%)

Query: 48 LFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
          LF PEPEHYRGPKLKVAIIGAGLAGMSTAVELLD GHEV L
Sbjct: 52 LFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDL 92

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|P74306|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=crtQ PE=3 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
          ++VAI+GAGLAGM+TAVEL+D GHEV L
Sbjct: 1  MRVAIVGAGLAGMATAVELVDAGHEVEL 28

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
13991921	570	zeta-carotene desaturase precursor [Citr	0.966	0.150	0.895	5e-37
15824043	570	zeta-carotene desaturase [Citrus unshiu]	0.966	0.150	0.883	7e-37
18073986	570	zeta-carotene desaturase [Citrus sinensi	0.966	0.150	0.883	5e-36
83637848	570	zeta-carotene desaturase [Citrus unshiu]	0.966	0.150	0.872	8e-36
190576747	570	zeta carotene desaturase [Citrus maxima]	0.966	0.150	0.872	1e-35
50365500	263	zeta-carotene desaturase [Citrus clement	0.966	0.326	0.860	2e-34
226295512	572	zeta-carotene desaturase [Carica papaya]	0.966	0.150	0.752	2e-28
225624819	552	zeta-carotene desaturase protein [Carica	0.966	0.155	0.741	3e-28
298204896	552	unnamed protein product [Vitis vinifera]	0.741	0.119	0.863	6e-26
359487812	583	PREDICTED: zeta-carotene desaturase, chl	0.966	0.147	0.66	6e-26

>gi|13991921|gb|AAK51557.1|AF372617_1 zeta-carotene desaturase precursor [Citrus x paradisi]

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 78/86 (90%)

Query: 1  MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPK 60
          MGSS+L PATSVTGV WSRVQ K PRF VRASLD NVSDMSVNAPKGLF PEPEHYRGPK
Sbjct: 1  MGSSVLFPATSVTGVSWSRVQEKCPRFCVRASLDANVSDMSVNAPKGLFPPEPEHYRGPK 60

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
          LKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 61 LKVAIIGAGLAGMSTAVELLDQGHEV 86

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15824043|dbj|BAB68552.1| zeta-carotene desaturase [Citrus unshiu]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/86 (88%), Positives = 78/86 (90%)

Query: 1  MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPK 60
          MGSS+L PATS+TGV WSRVQ K PRF VRASLD NVSDMSVNAPKGLF PEPEHYRGPK
Sbjct: 1  MGSSVLFPATSITGVSWSRVQEKCPRFCVRASLDANVSDMSVNAPKGLFPPEPEHYRGPK 60

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
          LKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 61 LKVAIIGAGLAGMSTAVELLDQGHEV 86

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18073986|emb|CAC85667.1| zeta-carotene desaturase [Citrus sinensis]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/86 (88%), Positives = 77/86 (89%)

Query: 1  MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPK 60
          MGSS+L PATSVTGV WSRVQ K  RF VRASLD NVSDMSVNAPKGLF PEPEHYRGPK
Sbjct: 1  MGSSVLFPATSVTGVSWSRVQEKCRRFCVRASLDANVSDMSVNAPKGLFPPEPEHYRGPK 60

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
          LKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 61 LKVAIIGAGLAGMSTAVELLDQGHEV 86

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83637848|gb|ABC33728.1| zeta-carotene desaturase [Citrus unshiu]

 Score =  154 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 75/86 (87%), Positives = 77/86 (89%)

Query: 1  MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPK 60
          MGSS+L PATSVTGV WSRVQ K  RF VRASLD NVSDMSVNAP+GLF PEPEHYRGPK
Sbjct: 1  MGSSVLFPATSVTGVSWSRVQEKCRRFCVRASLDANVSDMSVNAPQGLFPPEPEHYRGPK 60

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
          LKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 61 LKVAIIGAGLAGMSTAVELLDQGHEV 86

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190576747|gb|ACE79169.1| zeta carotene desaturase [Citrus maxima]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 77/86 (89%)

Query: 1  MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPK 60
          MGSS+L PATSVTGV WSR+Q K  RF VRASLD NVSDMSVNAPKGLF PEPEHYRGPK
Sbjct: 1  MGSSVLFPATSVTGVSWSRLQEKCRRFCVRASLDANVSDMSVNAPKGLFPPEPEHYRGPK 60

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
          LKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 61 LKVAIIGAGLAGMSTAVELLDQGHEV 86

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50365500|gb|AAT76050.1| zeta-carotene desaturase [Citrus clementina]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 76/86 (88%)

Query: 1  MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPK 60
          MGSS+L PATS+ GV WSRVQ K  RF VRASLD NVSDMSVNAPKGLF PEPEHYRGPK
Sbjct: 1  MGSSVLFPATSLRGVSWSRVQEKCRRFCVRASLDANVSDMSVNAPKGLFPPEPEHYRGPK 60

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
          LKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 61 LKVAIIGAGLAGMSTAVELLDQGHEV 86

Source: Citrus clementina

Species: Citrus clementina

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226295512|gb|ACO40527.1| zeta-carotene desaturase [Carica papaya]

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/89 (75%), Positives = 72/89 (80%), Gaps = 3/89 (3%)

Query: 1  MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLD---TNVSDMSVNAPKGLFLPEPEHYR 57
          M SS+L  ATSV G++    QVK  R  VR+SLD   TNVSDMSVNAPKGLF PEPEHYR
Sbjct: 1  MASSVLFAATSVAGLRSLAAQVKQQRVCVRSSLDSLETNVSDMSVNAPKGLFPPEPEHYR 60

Query: 58 GPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
          GPKLKVAI+GAGLAGMSTAVELLD GHEV
Sbjct: 61 GPKLKVAIVGAGLAGMSTAVELLDQGHEV 89

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225624819|gb|ABG72806.2| zeta-carotene desaturase protein [Carica papaya]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/89 (74%), Positives = 72/89 (80%), Gaps = 3/89 (3%)

Query: 1  MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLD---TNVSDMSVNAPKGLFLPEPEHYR 57
          M SS+L  ATSV G++    QVK  R  VR+SLD   TNVSDMSVNAPKGLF PEPEHYR
Sbjct: 1  MASSVLFAATSVAGLRSLAAQVKQQRVCVRSSLDSLETNVSDMSVNAPKGLFPPEPEHYR 60

Query: 58 GPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
          GPKL+VAI+GAGLAGMSTAVELLD GHEV
Sbjct: 61 GPKLEVAIVGAGLAGMSTAVELLDQGHEV 89

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204896|emb|CBI34203.3| unnamed protein product [Vitis vinifera]

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/66 (86%), Positives = 61/66 (92%)

Query: 21 QVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELL 80
          Q+KG R  VR+SLD++VSDMSVNAPKGLF PEPEHYRGPKLKVAIIGAGLAGMSTAVELL
Sbjct: 4  QLKGQRLFVRSSLDSDVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELL 63

Query: 81 DHGHEV 86
          D GHEV
Sbjct: 64 DQGHEV 69

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487812|ref|XP_002277348.2| PREDICTED: zeta-carotene desaturase, chloroplastic/chromoplastic [Vitis vinifera]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 72/100 (72%), Gaps = 14/100 (14%)

Query: 1   MGSSLLLPAT-SVTGVKWSRV-------------QVKGPRFHVRASLDTNVSDMSVNAPK 46
           M SS+L PA  S  G +   V             Q+KG R  VR+SLD++VSDMSVNAPK
Sbjct: 1   MSSSILFPAAGSRAGFRGDTVGLFLSGGRRPMPSQLKGQRLFVRSSLDSDVSDMSVNAPK 60

Query: 47  GLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
           GLF PEPEHYRGPKLKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 61  GLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEV 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2114789	558	ZDS "zeta-carotene desaturase"	0.921	0.146	0.674	1.7e-22
TAIR|locus:2129515	566	PDS3 "phytoene desaturase 3" [	0.977	0.153	0.351	0.00019

TAIR|locus:2114789 ZDS "zeta-carotene desaturase" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 58/86 (67%), Positives = 66/86 (76%)

Query:     1 MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPK 60
             M SS++  AT    V      +K  RF+V +SLD++VSDMSVNAPKGLF PEP  Y+GPK
Sbjct:     1 MASSVVFAATGSLSVP----PLKSRRFYVNSSLDSDVSDMSVNAPKGLFPPEPVPYKGPK 56

Query:    61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
             LKVAIIGAGLAGMSTAVELLD GHEV
Sbjct:    57 LKVAIIGAGLAGMSTAVELLDQGHEV 82

GO:0005739 "mitochondrion" evidence=ISM

GO:0016117 "carotenoid biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016719 "carotene 7,8-desaturase activity" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016120 "carotene biosynthetic process" evidence=IDA

TAIR|locus:2129515 PDS3 "phytoene desaturase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00019, P = 0.00019
 Identities = 33/94 (35%), Positives = 44/94 (46%)

Query:     1 MGSSLLLPATSVTGVKWSRVQVKGPRFHV-----RASLDTNVSDMSVNAPKGLFLPEPEH 55
             MG S  +P +     +  R    GP   V     R  L+  V+ +   +    F   P  
Sbjct:    30 MGHSFRVPTSQALKTRTRRRSTAGPLQVVCVDIPRPELENTVNFLEAASLSASFRSAPRP 89

Query:    56 YRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
              + P LKV I GAGLAG+STA  L D GH+ LL+
Sbjct:    90 AK-P-LKVVIAGAGLAGLSTAKYLADAGHKPLLL 121


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       89        89   0.00091  102 3  11 22  0.49    29
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  526 (56 KB)
  Total size of DFA:  101 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.61u 0.12s 10.73t   Elapsed:  00:00:00
  Total cpu time:  10.61u 0.12s 10.73t   Elapsed:  00:00:00
  Start:  Fri May 10 10:10:44 2013   End:  Fri May 10 10:10:44 2013

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0009536 "plastid" evidence=IEA

GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016166 "phytoene dehydrogenase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZTP4	ZDS_MAIZE	1, ., 3, ., 5, ., 6	0.9268	0.4606	0.0719	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031131001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (583 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027139001	SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (569 aa)			•			•	•		0.980
	GSVIVG00016526001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (529 aa)				•		•	•		0.939
	GSVIVG00025310001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (504 aa)				•		•	•		0.938
	PDS1	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (582 aa)			•			•	•	•	0.917
	GSVIVG00025926001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (583 aa)				•		•			0.903
	GSVIVG00033552001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (307 aa)	•		•				•		0.611
	GSVIVG00018857001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (396 aa)	•	•	•	•			•		0.537
	GSVIVG00024765001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (389 aa)	•	•	•				•		0.524
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•			•		0.506
	GSVIVG00016085001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (471 aa)				•			•		0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	89
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	2e-34
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	2e-09
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	1e-06
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	3e-06
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	7e-06
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	7e-06
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	8e-06
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	9e-06
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	1e-05
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	1e-05
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	2e-05
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	3e-05
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	7e-05
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	7e-05
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	8e-05
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	1e-04
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-04
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	2e-04
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	2e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	3e-04
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	3e-04
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	4e-04
TIGR03026	409	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog	4e-04
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	4e-04
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	4e-04
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	5e-04
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	6e-04
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	9e-04
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	9e-04
COG0569	225	COG0569, TrkA, K+ transport systems, NAD-binding c	0.001
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	0.001
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	0.001
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.001
COG1004	414	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenas	0.002
PRK12409	410	PRK12409, PRK12409, D-amino acid dehydrogenase sma	0.002
PLN02712	667	PLN02712, PLN02712, arogenate dehydrogenase	0.002
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	0.002
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.003
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	0.003
pfam03721	188	pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose	0.003
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	0.004
PRK07588	391	PRK07588, PRK07588, hypothetical protein; Provisio	0.004
COG3075	421	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehy	0.004

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score =  122 bits (309), Expect = 2e-34
 Identities = 55/77 (71%), Positives = 59/77 (76%)

Query: 10  TSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAG 69
            S       R  +K  R  V +SLD+NVSDMSVNAPKGLF PEPE Y+GPKLKVAIIGAG
Sbjct: 25  RSPVAGAVLRSPLKSARLSVSSSLDSNVSDMSVNAPKGLFPPEPEAYKGPKLKVAIIGAG 84

Query: 70  LAGMSTAVELLDHGHEV 86
           LAGMSTAVELLD GHEV
Sbjct: 85  LAGMSTAVELLDQGHEV 101

Length = 569

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 21/25 (84%), Positives = 24/25 (96%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEV 86
          KVAI+GAGLAG+STAVEL+D GHEV
Sbjct: 1  KVAIVGAGLAGLSTAVELVDAGHEV 25

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V +IG G+ G+STA EL   G  V L+
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLL 28

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 16/27 (59%), Positives = 21/27 (77%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLL 88
          +VAI GAGLAG++ A EL D G++V L
Sbjct: 2  RVAIAGAGLAGLAAAYELADAGYDVTL 28

Length = 485

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V IIG G+ G+S A  L + G +V ++
Sbjct: 6  DVVIIGGGIVGLSAAYYLAERGADVTVL 33

Length = 387

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 49  FLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
           ++PE     G K  VAIIGAG AG++ A  LL  GH+V
Sbjct: 184 YIPERAPKSGKK--VAIIGAGPAGLTAAYYLLRKGHDV 219

Length = 652

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 41.6 bits (98), Expect = 8e-06
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V IIG G AG++ A+ L   G +V LI
Sbjct: 1  DVVIIGGGPAGLAAAIRLARLGLKVALI 28

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 41.4 bits (98), Expect = 9e-06
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEV 86
          K+AI+G G+AG++ A  L   GHEV
Sbjct: 1  KIAIVGGGIAGLAAAYRLAKRGHEV 25

Length = 434

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 39.0 bits (92), Expect = 1e-05
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 65 IIGAGLAGMSTAVELLDHGHEVLLI 89
          I+GAGL+G+  A  L   G +VL++
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVL 25

Length = 66

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 1   MGSSLLLPATSVTGVKWSRVQVKGP-----RFHVRASLDTNVSDMSVNAPKGLF--LPEP 53
           MG SL +P +S +  +  R   +GP       + R  L+  V+ +   A    F   P P
Sbjct: 31  MGHSLRVPTSSSSRTRRRRNSGRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRP 90

Query: 54  EHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
                  LKV I GAGLAG+STA  L D GH+ +L+
Sbjct: 91  AK----PLKVVIAGAGLAGLSTAKYLADAGHKPILL 122

Length = 567

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
            L VAI+GAG AG++ A+ L   G +V L+
Sbjct: 1  KMLDVAIVGAGPAGLALALALARAGLDVTLL 31

Length = 387

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V +IG+GLAG++ A+E  + G +V ++
Sbjct: 2  VVVIGSGLAGLAAALEAAEAGLKVAVV 28

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 39.0 bits (91), Expect = 7e-05
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V I+GAGLAG+S A EL   G++V ++
Sbjct: 9  DVIIVGAGLAGLSAAYELKKAGYQVQIL 36

Length = 450

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 62  KVAIIGAGLAGMSTAVELLDHGHEV 86
           KVA+IGAG AG++ A  L   G++V
Sbjct: 142 KVAVIGAGPAGLTAAHRLARKGYDV 166

Length = 457

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K  V +IG GLAG++ A+   + G  V L+
Sbjct: 2  KFDVLVIGGGLAGLTAALAAAEAGKRVALV 31

Length = 422

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 52  EPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
           EPE       KVA+IGAG AG++ A EL   GH V
Sbjct: 125 EPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSV 159

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 57  RGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
            G + KVA+IGAG AG++ A  L   GH V
Sbjct: 536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPV 565

Length = 1019

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V IIG G AG+  A+     G  VLLI
Sbjct: 5  DVIIIGGGPAGLMAAISAAKAGRRVLLI 32

Length = 408

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V +IG G AG+  A+     G  VLLI
Sbjct: 2  DVIVIGGGAAGLMAAISAAKRGRRVLLI 29

Length = 405

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           K  V IIGAG AG++ A ELL  G+ V ++
Sbjct: 3  NKKSVVIIGAGPAGLTAAYELLKRGYPVTVL 33

Length = 479

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 30  RASLDTNVSDMSV------NAP-KGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDH 82
           R  +D  V   +V       A   G   P P    G   +VA+IG G AG+S A  L   
Sbjct: 102 RGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTG--KRVAVIGGGPAGLSAAYHLRRM 159

Query: 83  GHEV 86
           GH V
Sbjct: 160 GHAV 163

Length = 564

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          +  V I+G G AG+  A+ L   G  V+L+
Sbjct: 1  ETDVLIVGGGPAGLMLALLLARAGVRVVLV 30

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K+A+IG G  G+  A  L D GH+V  +
Sbjct: 2  KIAVIGLGYVGLPLAALLADLGHDVTGV 29

Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          P   V +IGAGL G++ A  L   G +V ++
Sbjct: 2  PMYDVVVIGAGLNGLAAAALLARAGLKVTVL 32

Length = 487

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 62  KVAIIGAGLAGMSTAVELLDHGHEV 86
           KVA++G+G AG++ A +L   GH+V
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHKV 169

Length = 471

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 46  KGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
           +G    E    R  K KVA+IGAG AG++ A +L   GH+V +
Sbjct: 110 EGWIPGELPGSRTGK-KVAVIGAGPAGLAAADDLSRAGHDVTV 151

Length = 457

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
          +K+AIIGAG+ G++ A  L + GHEV
Sbjct: 1  MKIAIIGAGIGGLTAAALLQEQGHEV 26

Length = 373

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          +  V +IG G AG+  A+E  + G +V L+
Sbjct: 6  EFDVVVIGGGGAGLRAAIEAAEAGLKVALL 35

Length = 562

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++GAGLAG+  A EL D G  VLL+
Sbjct: 7  VIVVGAGLAGLVAAAELADAGKRVLLL 33

Length = 549

>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K+ IIGAG  G S A EL + GH V+LI
Sbjct: 2  KIIIIGAGRVGRSVARELSEEGHNVVLI 29

Length = 225

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
           KVAIIGAG AG++ A  L   G+EV
Sbjct: 19 KKVAIIGAGPAGLAAAGYLACLGYEV 44

Length = 352

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V +IGAG AG   A      G +V LI
Sbjct: 6  VIVIGAGPAGYVAARRAAKLGKKVALI 32

Length = 460

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 62  KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
             AIIG G+AG + A+ L   G +V L 
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLY 289

Length = 662

>gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K+ +IG G  G+ T   L + GHEV+ +
Sbjct: 2  KITVIGTGYVGLVTGACLAELGHEVVCV 29

Length = 414

>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit; Provisional

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           +A+IGAG+ G++TA  L   G++V + 
Sbjct: 3  HIAVIGAGITGVTTAYALAQRGYQVTVF 30

Length = 410

>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 19/56 (33%), Positives = 24/56 (42%)

Query: 32 SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVL 87
           L  ++   S  A     LP        +LK+AIIG G  G   A  L+  GH VL
Sbjct: 24 RLSLSIKSQSATATDKQPLPNSNPDNTTQLKIAIIGFGNYGQFLAKTLISQGHTVL 79

Length = 667

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          KV I+G G+ G+S A+ L   G  V L+
Sbjct: 6  KVLIVGGGIGGLSAAIALRRAGIAVDLV 33

Length = 375

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 54  EHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           +    P   V ++GAG  G+  A      G +V LI
Sbjct: 130 KGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLI 165

Length = 415

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V ++GAG  G++ A++L   G  V+L+
Sbjct: 25 PVVVVGAGPVGLALAIDLAQQGVPVVLL 52

Length = 547

>gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          ++A+IG G  G+ TAV L + GH+V+ +
Sbjct: 2  RIAVIGLGYVGLPTAVCLAEIGHDVVGV 29

The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 188

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 15/23 (65%), Positives = 17/23 (73%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGH 84
          +VAI GAGLAG+S A  L D GH
Sbjct: 1  RVAIAGAGLAGLSCAKYLADAGH 23

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          +KVAI GAG+AG + A  L  +GHE  LI
Sbjct: 1  MKVAISGAGIAGPTLAYWLRRYGHEPTLI 29

Length = 391

>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
             VAIIG GLAG++  + L   G    ++
Sbjct: 2  NFDVAIIGGGLAGLTCGLALQQAGKRCAIV 31

Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
PRK12831	464	putative oxidoreductase; Provisional	99.72
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.72
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.7
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.68
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.67
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.66
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.66
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.65
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.65
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.64
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.64
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.63
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.62
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.62
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.6
PRK13984	604	putative oxidoreductase; Provisional	99.57
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.57
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.5
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.43
PLN02487	569	zeta-carotene desaturase	98.78
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.61
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.56
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.54
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.5
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.5
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.49
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.45
PRK10157	428	putative oxidoreductase FixC; Provisional	98.43
PRK09126	392	hypothetical protein; Provisional	98.43
PRK07045	388	putative monooxygenase; Reviewed	98.43
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.42
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.41
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.41
PRK07236	386	hypothetical protein; Provisional	98.39
PRK10015	429	oxidoreductase; Provisional	98.39
PRK06847	375	hypothetical protein; Provisional	98.39
PRK10262	321	thioredoxin reductase; Provisional	98.38
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.38
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.37
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.37
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.37
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.37
PRK08013	400	oxidoreductase; Provisional	98.37
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.37
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.37
PRK08163	396	salicylate hydroxylase; Provisional	98.36
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.36
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.36
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.35
PRK06475	400	salicylate hydroxylase; Provisional	98.34
PLN02985	514	squalene monooxygenase	98.33
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.33
PRK07208	479	hypothetical protein; Provisional	98.33
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.33
PLN02852	491	ferredoxin-NADP+ reductase	98.33
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.32
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.31
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.31
PRK08244	493	hypothetical protein; Provisional	98.31
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.3
PRK06184	502	hypothetical protein; Provisional	98.3
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.3
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.29
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.29
PRK06116	450	glutathione reductase; Validated	98.29
PRK06185	407	hypothetical protein; Provisional	98.29
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.29
PRK06126	545	hypothetical protein; Provisional	98.28
PRK05868	372	hypothetical protein; Validated	98.28
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.27
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.27
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.25
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.25
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.25
PLN02576	496	protoporphyrinogen oxidase	98.24
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.24
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.24
PLN02463	447	lycopene beta cyclase	98.23
COG2081	408	Predicted flavoproteins [General function predicti	98.22
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.22
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.22
PRK06370	463	mercuric reductase; Validated	98.22
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.22
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.21
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.21
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.21
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.18
PLN02697	529	lycopene epsilon cyclase	98.18
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.17
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.16
PRK06834	488	hypothetical protein; Provisional	98.14
PRK14694	468	putative mercuric reductase; Provisional	98.14
PRK07190	487	hypothetical protein; Provisional	98.13
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.12
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.12
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.12
PTZ00052	499	thioredoxin reductase; Provisional	98.11
PTZ00188	506	adrenodoxin reductase; Provisional	98.1
PRK08294	634	phenol 2-monooxygenase; Provisional	98.1
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.1
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.09
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.08
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.07
PTZ00367	567	squalene epoxidase; Provisional	98.07
PRK13748	561	putative mercuric reductase; Provisional	98.07
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.06
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.06
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.05
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.05
PLN02529	738	lysine-specific histone demethylase 1	98.05
PRK08274	466	tricarballylate dehydrogenase; Validated	98.04
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.02
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.02
PRK08401	466	L-aspartate oxidase; Provisional	98.01
PRK07121	492	hypothetical protein; Validated	98.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.98
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.97
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.97
PLN02507	499	glutathione reductase	97.95
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.95
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.94
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.94
PRK06996	398	hypothetical protein; Provisional	97.93
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.93
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.93
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.91
PLN02612	567	phytoene desaturase	97.91
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.9
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.89
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.89
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.88
PTZ00058	561	glutathione reductase; Provisional	97.88
PLN02661	357	Putative thiazole synthesis	97.87
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.86
PLN02546	558	glutathione reductase	97.86
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.83
PRK07804	541	L-aspartate oxidase; Provisional	97.83
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.83
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.82
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.81
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.81
PLN02568	539	polyamine oxidase	97.8
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.79
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.78
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.77
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.77
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.76
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.76
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.76
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.76
PRK14727	479	putative mercuric reductase; Provisional	97.76
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.75
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.75
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.74
PLN02676	487	polyamine oxidase	97.73
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.73
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.73
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.72
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.71
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.68
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.68
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.68
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.67
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.67
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.65
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.63
PRK08275	554	putative oxidoreductase; Provisional	97.62
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.61
PRK02106	560	choline dehydrogenase; Validated	97.58
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.57
PLN02815	594	L-aspartate oxidase	97.57
PF14691	111	Fer4_20: Dihydroprymidine dehydrogenase domain II,	97.57
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.54
PRK05257	494	malate:quinone oxidoreductase; Validated	97.54
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.52
PRK08071	510	L-aspartate oxidase; Provisional	97.51
PRK06175	433	L-aspartate oxidase; Provisional	97.51
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.51
PLN03000	881	amine oxidase	97.49
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.49
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.49
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.48
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.47
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.47
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.47
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.46
PRK12839	572	hypothetical protein; Provisional	97.46
PRK07395	553	L-aspartate oxidase; Provisional	97.46
PRK11445	351	putative oxidoreductase; Provisional	97.43
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.42
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.41
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.41
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.4
PRK09077	536	L-aspartate oxidase; Provisional	97.37
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.36
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.36
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.34
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.31
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.31
PLN02976	1713	amine oxidase	97.26
COG3573	552	Predicted oxidoreductase [General function predict	97.21
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.2
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.19
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.19
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.18
PRK09897	534	hypothetical protein; Provisional	97.15
PRK07512	513	L-aspartate oxidase; Provisional	97.11
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.07
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.05
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.02
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.99
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.99
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.99
COG0579	429	Predicted dehydrogenase [General function predicti	96.98
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.97
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.95
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.94
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.89
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.82
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.76
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.76
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.76
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.74
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.74
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.71
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	96.68
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	96.66
PLN02785	587	Protein HOTHEAD	96.64
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.59
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.57
TIGR02053	463	MerA mercuric reductase. This model represents the	96.56
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.52
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.5
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.49
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.48
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.47
PRK06370	463	mercuric reductase; Validated	96.47
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.46
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.45
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.45
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.45
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.45
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	96.45
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.44
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.43
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.43
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.41
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.4
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.38
PRK07846	451	mycothione reductase; Reviewed	96.36
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.33
PRK14694	468	putative mercuric reductase; Provisional	96.33
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.31
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.3
PRK13748	561	putative mercuric reductase; Provisional	96.29
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.28
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.28
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.28
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.27
PRK12831	464	putative oxidoreductase; Provisional	96.26
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.26
PTZ00052	499	thioredoxin reductase; Provisional	96.24
KOG2852	380	consensus Possible oxidoreductase [General functio	96.22
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.22
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.18
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.18
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.17
PRK14727	479	putative mercuric reductase; Provisional	96.16
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.15
PRK06116	450	glutathione reductase; Validated	96.13
PRK10262	321	thioredoxin reductase; Provisional	96.1
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.1
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.09
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.07
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.05
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.05
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.04
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.04
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	96.02
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.0
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.96
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.95
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.94
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.92
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.91
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.91
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.89
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.89
PLN02507	499	glutathione reductase	95.84
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	95.83
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.82
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.76
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.75
PTZ00058	561	glutathione reductase; Provisional	95.73
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.72
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.71
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.67
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.62
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.62
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.6
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.54
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.53
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.53
PLN02546	558	glutathione reductase	95.42
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.38
PRK04148	134	hypothetical protein; Provisional	95.37
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.37
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.35
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.32
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.31
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.31
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.29
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.29
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.28
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.23
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.22
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.15
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.12
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.1
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	95.04
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.02
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.01
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.98
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.98
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	94.95
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.87
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.85
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	94.84
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.79
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.77
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	94.77
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.75
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.73
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	94.72
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.65
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.62
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	94.61
PRK06223	307	malate dehydrogenase; Reviewed	94.58
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.56
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	94.56
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.54
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.52
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.5
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.5
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.5
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.45
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	94.4
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.38
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.34
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.33
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.32
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	94.3
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.29
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.29
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.28
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.24
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.24
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.21
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.18
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.17
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	94.16
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	94.15
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.15
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.13
PRK07846	451	mycothione reductase; Reviewed	94.12
PRK08017	256	oxidoreductase; Provisional	94.07
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	94.05
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.04
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.03
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.99
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.95
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.95
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.95
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	93.91
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	93.88
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.88
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	93.88
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	93.86
PRK08328	231	hypothetical protein; Provisional	93.85
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	93.84
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.83
PTZ00117	319	malate dehydrogenase; Provisional	93.76
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	93.75
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.74
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.66
KOG2853	509	consensus Possible oxidoreductase [General functio	93.63
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	93.58
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	93.58
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.54
PLN02494	477	adenosylhomocysteinase	93.53
PRK14031	444	glutamate dehydrogenase; Provisional	93.49
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	93.47
PRK09496	453	trkA potassium transporter peripheral membrane com	93.46
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	93.44
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	93.44
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.41
KOG2960	328	consensus Protein involved in thiamine biosynthesi	93.37
PRK13984	604	putative oxidoreductase; Provisional	93.34
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	93.33
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.32
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.31
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	93.3
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	93.29
PRK06057	255	short chain dehydrogenase; Provisional	93.26
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	93.26
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	93.23
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.23
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.22
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.2
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	93.14
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	93.09
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	93.08
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.07
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	93.07
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.01
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	93.0
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	92.99
PTZ00075	476	Adenosylhomocysteinase; Provisional	92.97
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.97
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.95
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	92.93
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.92
PRK07060	245	short chain dehydrogenase; Provisional	92.87
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	92.85
PLN02712	667	arogenate dehydrogenase	92.85
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	92.84
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	92.82
PRK12480	330	D-lactate dehydrogenase; Provisional	92.8
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	92.79
PLN02240	352	UDP-glucose 4-epimerase	92.75
PRK07326	237	short chain dehydrogenase; Provisional	92.73
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.72
PRK07774	250	short chain dehydrogenase; Provisional	92.69
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.69
PRK08223	287	hypothetical protein; Validated	92.66
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	92.65
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.64
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.62
PRK10637	457	cysG siroheme synthase; Provisional	92.57
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.55
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	92.52
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.5
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	92.49
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.4
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	92.4
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.39
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.32
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	92.3
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	92.26
PRK07831	262	short chain dehydrogenase; Provisional	92.24
PLN02653	340	GDP-mannose 4,6-dehydratase	92.23
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.13
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	92.12
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	92.11
PRK06841	255	short chain dehydrogenase; Provisional	92.06
PLN02778	298	3,5-epimerase/4-reductase	92.05
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	92.03
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.02
PRK10669	558	putative cation:proton antiport protein; Provision	92.0
PRK07454	241	short chain dehydrogenase; Provisional	91.99
PLN02214	342	cinnamoyl-CoA reductase	91.98
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	91.98
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	91.95
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	91.95
PRK12828	239	short chain dehydrogenase; Provisional	91.91
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	91.91
PRK06849	389	hypothetical protein; Provisional	91.9
PLN02583	297	cinnamoyl-CoA reductase	91.88
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	91.85
PLN02256	304	arogenate dehydrogenase	91.81
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.79
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	91.78
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	91.78
PRK05875	276	short chain dehydrogenase; Provisional	91.71
PRK05993	277	short chain dehydrogenase; Provisional	91.67
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	91.67
PRK13403	335	ketol-acid reductoisomerase; Provisional	91.66
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	91.65
PRK12939	250	short chain dehydrogenase; Provisional	91.63
PRK07577	234	short chain dehydrogenase; Provisional	91.62
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	91.61
PRK06949	258	short chain dehydrogenase; Provisional	91.6
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	91.6
PLN02206	442	UDP-glucuronate decarboxylase	91.6
PRK09072	263	short chain dehydrogenase; Provisional	91.58
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	91.56
PRK12742	237	oxidoreductase; Provisional	91.53
PRK12829	264	short chain dehydrogenase; Provisional	91.52
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	91.51
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	91.44
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.42
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	91.41
PRK12827	249	short chain dehydrogenase; Provisional	91.41
PLN02572	442	UDP-sulfoquinovose synthase	91.38
PRK05717	255	oxidoreductase; Validated	91.38
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	91.37
PRK07890	258	short chain dehydrogenase; Provisional	91.36
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.31

>PRK12831 putative oxidoreductase; Provisional

Probab=99.72  E-value=7.9e-18  Score=129.78  Aligned_cols=80  Identities=26%  Similarity=0.301  Sum_probs=63.2

Q ss_pred             ccCCCCCCCcccccCCC--cchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976            6 LLPATSVTGVKWSRVQV--KGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS   74 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~   74 (89)
                      .+.+|||+.+||+||||  +||..|+|+         .+++|+.|.....  .+.+..+..  ...++|+|||+||+|++
T Consensus        79 ~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~--~~~~~~~~~--~~~~~V~IIG~GpAGl~  154 (464)
T PRK12831         79 IAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWAREN--GIDLSETEE--KKGKKVAVIGSGPAGLT  154 (464)
T ss_pred             HHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHc--CCCCCCCcC--CCCCEEEEECcCHHHHH
Confidence            34579999999999998  999999997         4678888876542  222211211  23589999999999999


Q ss_pred             HHHHHHHCCCceEEc
Q 046976           75 TAVELLDHGHEVLLI   89 (89)
Q Consensus        75 aA~~L~~~G~~V~v~   89 (89)
                      +|++|+++|++|+||
T Consensus       155 aA~~l~~~G~~V~v~  169 (464)
T PRK12831        155 CAGDLAKMGYDVTIF  169 (464)
T ss_pred             HHHHHHhCCCeEEEE
Confidence            999999999999986

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.72  E-value=7e-18  Score=140.20  Aligned_cols=81  Identities=21%  Similarity=0.268  Sum_probs=61.3

Q ss_pred             ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCC-CCCCCCCCCCCCCCceEEEECCCHHHHHH
Q 046976            6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPK-GLFLPEPEHYRGPKLKVAIIGAGLAGMST   75 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~IvG~G~aGl~a   75 (89)
                      ..-+||++.+||+||||+||..|+|+.         +++++.++.+.... .+.++   ......++|+||||||||++|
T Consensus       476 i~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~---~~~~~~kkVaIIGGGPAGLSA  552 (1012)
T TIGR03315       476 IYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKP---QGKSSAHKVAVIGAGPAGLSA  552 (1012)
T ss_pred             HHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCC---CCCCCCCcEEEECCCHHHHHH
Confidence            345799999999999999999999974         56666665443211 11111   111235899999999999999


Q ss_pred             HHHHHHCCCceEEc
Q 046976           76 AVELLDHGHEVLLI   89 (89)
Q Consensus        76 A~~L~~~G~~V~v~   89 (89)
                      |++|+++|++|+||
T Consensus       553 A~~LAr~G~~VTV~  566 (1012)
T TIGR03315       553 GYFLARAGHPVTVF  566 (1012)
T ss_pred             HHHHHHCCCeEEEE
Confidence            99999999999986

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.70  E-value=2.1e-17  Score=127.21  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=62.3

Q ss_pred             ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976            6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA   76 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA   76 (89)
                      .+.+|||+++||+||||+||..|+|+.         +++|+.+....  ..+..+.... ....++|+|||+|++|+++|
T Consensus        83 ~~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~--~~~~~~~~~~-~~~~~~VvIIGaGpAGl~aA  159 (471)
T PRK12810         83 LHQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFE--EGWVKPDPPV-KRTGKKVAVVGSGPAGLAAA  159 (471)
T ss_pred             HHHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHH--cCCCCCCCCc-CCCCCEEEEECcCHHHHHHH
Confidence            356799999999999999999999963         67777776553  2221111111 11347999999999999999


Q ss_pred             HHHHHCCCceEEc
Q 046976           77 VELLDHGHEVLLI   89 (89)
Q Consensus        77 ~~L~~~G~~V~v~   89 (89)
                      .+|+++|++|+||
T Consensus       160 ~~l~~~G~~V~vi  172 (471)
T PRK12810        160 DQLARAGHKVTVF  172 (471)
T ss_pred             HHHHhCCCcEEEE
Confidence            9999999999986

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.68  E-value=3.6e-17  Score=135.91  Aligned_cols=82  Identities=23%  Similarity=0.288  Sum_probs=61.2

Q ss_pred             ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976            6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA   76 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA   76 (89)
                      .+.+||++.+||+||||+||..|+|+.         +++++.+..+........ .+.. ....++|+|||+||||++||
T Consensus       478 I~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~-~~~~-~~tgKkVaIIGgGPAGLsAA  555 (1019)
T PRK09853        478 IYQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWH-KPAG-IGSRKKVAVIGAGPAGLAAA  555 (1019)
T ss_pred             HHHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccC-CCCc-cCCCCcEEEECCCHHHHHHH
Confidence            356799999999999999999999974         566666654432111111 1111 11358999999999999999


Q ss_pred             HHHHHCCCceEEc
Q 046976           77 VELLDHGHEVLLI   89 (89)
Q Consensus        77 ~~L~~~G~~V~v~   89 (89)
                      ++|+++|++|+||
T Consensus       556 ~~Lar~G~~VtV~  568 (1019)
T PRK09853        556 YFLARAGHPVTVF  568 (1019)
T ss_pred             HHHHHcCCeEEEE
Confidence            9999999999986

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.67  E-value=5.4e-17  Score=134.25  Aligned_cols=84  Identities=14%  Similarity=0.147  Sum_probs=61.8

Q ss_pred             ccCCCCCCCcccccCCC--cchhhcccc-------chhhhhhhccccCCCC---CCCCC-CCCCCCCCceEEEECCCHHH
Q 046976            6 LLPATSVTGVKWSRVQV--KGPRFHVRA-------SLDTNVSDMSVNAPKG---LFLPE-PEHYRGPKLKVAIIGAGLAG   72 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~-------~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~v~IvG~G~aG   72 (89)
                      ...+||++++||||||+  +||..|+++       .+++|+.|........   .+... ........++|+|||+||||
T Consensus       239 i~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAG  318 (944)
T PRK12779        239 IESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSG  318 (944)
T ss_pred             HHHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHH
Confidence            45689999999999999  799999985       4788887764321111   11100 00011125899999999999


Q ss_pred             HHHHHHHHHCCCceEEc
Q 046976           73 MSTAVELLDHGHEVLLI   89 (89)
Q Consensus        73 l~aA~~L~~~G~~V~v~   89 (89)
                      |+||++|+++||+|+||
T Consensus       319 LsaA~~Lar~G~~VtVf  335 (944)
T PRK12779        319 LINAYLLAVEGFPVTVF  335 (944)
T ss_pred             HHHHHHHHHCCCeEEEE
Confidence            99999999999999997

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.66  E-value=8.4e-17  Score=133.75  Aligned_cols=79  Identities=24%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             ccCCCCCCCcccccCCC--cchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976            6 LLPATSVTGVKWSRVQV--KGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS   74 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~   74 (89)
                      ....|||+++||||||+  +||..|+|+         .+++|+.|....  ..+.++.. .  .+.++|+|||+|||||+
T Consensus       370 i~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~--~~~~~~~~-~--~~~~kVaIIG~GPAGLs  444 (1006)
T PRK12775        370 IYEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARA--KPVKPPRF-S--KKLGKVAICGSGPAGLA  444 (1006)
T ss_pred             HHHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHH--cCCCCCCC-C--CCCCEEEEECCCHHHHH
Confidence            45679999999999998  899999996         367888887654  22222111 1  12479999999999999


Q ss_pred             HHHHHHHCCCceEEc
Q 046976           75 TAVELLDHGHEVLLI   89 (89)
Q Consensus        75 aA~~L~~~G~~V~v~   89 (89)
                      ||.+|+++|++|+||
T Consensus       445 aA~~La~~G~~VtV~  459 (1006)
T PRK12775        445 AAADLVKYGVDVTVY  459 (1006)
T ss_pred             HHHHHHHcCCcEEEE
Confidence            999999999999997

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.66  E-value=1.2e-16  Score=127.25  Aligned_cols=81  Identities=22%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             ccCCCCCCCcccccCC--Ccchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976            6 LLPATSVTGVKWSRVQ--VKGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS   74 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~--~~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~   74 (89)
                      +...|||+++||||||  ++||..|+|+         .+++|+.|..+.  ..+.+..+... ...++|+|||+||+||+
T Consensus       265 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~--~~~~~~~~~~~-~~~~~VaIIGaGpAGLs  341 (654)
T PRK12769        265 SHQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALA--KGWRPDLSQVT-KSDKRVAIIGAGPAGLA  341 (654)
T ss_pred             HHHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHH--hCCCCCCcccc-cCCCEEEEECCCHHHHH
Confidence            4567999999999999  5899999996         367788887664  22322111111 13589999999999999


Q ss_pred             HHHHHHHCCCceEEc
Q 046976           75 TAVELLDHGHEVLLI   89 (89)
Q Consensus        75 aA~~L~~~G~~V~v~   89 (89)
                      +|.+|+++|++|+||
T Consensus       342 aA~~L~~~G~~V~V~  356 (654)
T PRK12769        342 CADVLARNGVAVTVY  356 (654)
T ss_pred             HHHHHHHCCCeEEEE
Confidence            999999999999986

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.65  E-value=1.6e-16  Score=122.52  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=62.3

Q ss_pred             ccCCCCCCCcccccCC--Ccchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976            6 LLPATSVTGVKWSRVQ--VKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS   74 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~--~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~   74 (89)
                      .+-+|||+++||+|||  ++||..|+|+.         +++|+.++...  ..+.+..+... .+.++|+|||+||+|++
T Consensus        79 ~~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~--~~~~~~~~~~~-~~~~~V~IIG~GpaGl~  155 (467)
T TIGR01318        79 SHQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALA--MGWRPDLSHVV-PTGKRVAVIGAGPAGLA  155 (467)
T ss_pred             HHHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHH--hCCCCCCCCcC-CCCCeEEEECCCHHHHH
Confidence            4568999999999999  69999999974         57777776553  22322211111 13489999999999999


Q ss_pred             HHHHHHHCCCceEEc
Q 046976           75 TAVELLDHGHEVLLI   89 (89)
Q Consensus        75 aA~~L~~~G~~V~v~   89 (89)
                      +|.+|+++|++|+||
T Consensus       156 aA~~l~~~G~~V~i~  170 (467)
T TIGR01318       156 CADILARAGVQVVVF  170 (467)
T ss_pred             HHHHHHHcCCeEEEE
Confidence            999999999999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.65  E-value=2.3e-16  Score=125.93  Aligned_cols=81  Identities=26%  Similarity=0.331  Sum_probs=59.8

Q ss_pred             ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976            6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA   76 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA   76 (89)
                      ..-.|||+++||+||||+|+..|+|..         ++++..+.+......+.+ ...  ....++|+|||+||+|+++|
T Consensus       133 ~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~-~~~--~~~~k~VaIIGaGpAGl~aA  209 (652)
T PRK12814        133 IKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIP-ERA--PKSGKKVAIIGAGPAGLTAA  209 (652)
T ss_pred             HHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCC-CCC--CCCCCEEEEECCCHHHHHHH
Confidence            456799999999999999999999964         455555543321111111 111  11247999999999999999


Q ss_pred             HHHHHCCCceEEc
Q 046976           77 VELLDHGHEVLLI   89 (89)
Q Consensus        77 ~~L~~~G~~V~v~   89 (89)
                      .+|+++|++|+||
T Consensus       210 ~~La~~G~~Vtv~  222 (652)
T PRK12814        210 YYLLRKGHDVTIF  222 (652)
T ss_pred             HHHHHCCCcEEEE
Confidence            9999999999986

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.64  E-value=3.2e-16  Score=124.73  Aligned_cols=81  Identities=21%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             ccCCCCCCCcccccCC--Ccchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976            6 LLPATSVTGVKWSRVQ--VKGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS   74 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~--~~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~   74 (89)
                      +...|||+++||||||  ++||..|+|+         .+++|+.|..+.  .++.+..+... ...++|+|||+||+||+
T Consensus       248 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~--~~~~~~~~~~~-~~~kkVaIIG~GpaGl~  324 (639)
T PRK12809        248 CHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALA--MGWRPDVSKVV-PRSEKVAVIGAGPAGLG  324 (639)
T ss_pred             HHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHH--hCCCCCCCccc-CCCCEEEEECcCHHHHH
Confidence            4567999999999999  6899999996         367888887664  33333221111 12589999999999999


Q ss_pred             HHHHHHHCCCceEEc
Q 046976           75 TAVELLDHGHEVLLI   89 (89)
Q Consensus        75 aA~~L~~~G~~V~v~   89 (89)
                      +|+.|+++|++|+||
T Consensus       325 aA~~L~~~G~~Vtv~  339 (639)
T PRK12809        325 CADILARAGVQVDVF  339 (639)
T ss_pred             HHHHHHHcCCcEEEE
Confidence            999999999999986

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.64  E-value=3.3e-16  Score=121.33  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976            6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA   76 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA   76 (89)
                      ++-+||++.+||++|||+|+..|+|+.         +++++.+....  ..+..+.... ....++|+|||+|++|+++|
T Consensus        83 ~~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~--~~~~~~~~~~-~~~~~~V~IIGaG~aGl~aA  159 (485)
T TIGR01317        83 LHATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQ--EGWVQPRPPS-KRTGKKVAVVGSGPAGLAAA  159 (485)
T ss_pred             HHhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHH--cCCCCCCCCc-CCCCCEEEEECCcHHHHHHH
Confidence            456799999999999999999999974         56666655443  2222211111 11247999999999999999


Q ss_pred             HHHHHCCCceEEc
Q 046976           77 VELLDHGHEVLLI   89 (89)
Q Consensus        77 ~~L~~~G~~V~v~   89 (89)
                      .+|+++|++|+||
T Consensus       160 ~~L~~~g~~V~v~  172 (485)
T TIGR01317       160 DQLNRAGHTVTVF  172 (485)
T ss_pred             HHHHHcCCeEEEE
Confidence            9999999999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.63  E-value=4.9e-16  Score=121.82  Aligned_cols=80  Identities=25%  Similarity=0.331  Sum_probs=59.9

Q ss_pred             ccCCCCCCCcccccCCCcchhhccccch---------hhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976            6 LLPATSVTGVKWSRVQVKGPRFHVRASL---------DTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA   76 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA   76 (89)
                      ..-+|||+++||++|||+||..|+|+.+         +++..|....  ..+.++.+..  ...++|+|||+||+||++|
T Consensus        78 ~~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~--~~~~~~~~~~--~~g~~V~VIGaGpaGL~aA  153 (564)
T PRK12771         78 LTKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIA--NGWKFPAPAP--DTGKRVAVIGGGPAGLSAA  153 (564)
T ss_pred             HHHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHH--cCCCCCCCCC--CCCCEEEEECCCHHHHHHH
Confidence            3567999999999999999999999754         4444443332  2222221111  2358999999999999999


Q ss_pred             HHHHHCCCceEEc
Q 046976           77 VELLDHGHEVLLI   89 (89)
Q Consensus        77 ~~L~~~G~~V~v~   89 (89)
                      ..|+++|++|+||
T Consensus       154 ~~l~~~G~~V~v~  166 (564)
T PRK12771        154 YHLRRMGHAVTIF  166 (564)
T ss_pred             HHHHHCCCeEEEE
Confidence            9999999999885

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.62  E-value=3.7e-16  Score=129.67  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=58.5

Q ss_pred             cCCCCCCCccc-ccCCCcchhhcccc--------chhhhhhhccccC---------CCCCCC---CCCCCCCCCCceEEE
Q 046976            7 LPATSVTGVKW-SRVQVKGPRFHVRA--------SLDTNVSDMSVNA---------PKGLFL---PEPEHYRGPKLKVAI   65 (89)
Q Consensus         7 ~~~~~~~~~~~-~iC~~~C~~~c~r~--------~l~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~v~I   65 (89)
                      .-+||++.+|| |||| +||..|+|+        .+++++.|..+..         ..+|.+   ..+.+.....++|+|
T Consensus       310 ~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaV  388 (1028)
T PRK06567        310 VIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILV  388 (1028)
T ss_pred             HHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEE
Confidence            35899999999 9999 699999996        2566666542110         001211   011111123589999


Q ss_pred             ECCCHHHHHHHHHHHHCCCceEEc
Q 046976           66 IGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        66 vG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ||+||||+++|++|+++||+|+||
T Consensus       389 VGaGPAGLsAA~~La~~Gh~Vtv~  412 (1028)
T PRK06567        389 TGLGPAGFSLSYYLLRSGHNVTAI  412 (1028)
T ss_pred             ECcCHHHHHHHHHHHhCCCeEEEE
Confidence            999999999999999999999986

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.62  E-value=8.1e-16  Score=117.94  Aligned_cols=81  Identities=26%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             cccCCCCCCCcccccCCC--cchhhccccc-------------hhhhhhhccccCCCCCCC-CCCCCCCCCCceEEEECC
Q 046976            5 LLLPATSVTGVKWSRVQV--KGPRFHVRAS-------------LDTNVSDMSVNAPKGLFL-PEPEHYRGPKLKVAIIGA   68 (89)
Q Consensus         5 ~~~~~~~~~~~~~~iC~~--~C~~~c~r~~-------------l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~IvG~   68 (89)
                      ....+||++.+||++|||  +|+..|+|+.             +++++.+.....  +... +.+.+  ...++|+|||+
T Consensus        66 ~~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~--~~~~~~~~~~--~~~~~V~IIG~  141 (449)
T TIGR01316        66 IIKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQH--GIETEPEKAP--STHKKVAVIGA  141 (449)
T ss_pred             HHHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhc--CCCcCCCCCC--CCCCEEEEECc
Confidence            345689999999999999  9999998643             456666554331  1111 11111  13489999999


Q ss_pred             CHHHHHHHHHHHHCCCceEEc
Q 046976           69 GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        69 G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      |++|+++|.+|+++|++|+||
T Consensus       142 G~aGl~aA~~l~~~G~~V~vi  162 (449)
T TIGR01316       142 GPAGLACASELAKAGHSVTVF  162 (449)
T ss_pred             CHHHHHHHHHHHHCCCcEEEE
Confidence            999999999999999999986

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.60  E-value=1.1e-15  Score=116.97  Aligned_cols=80  Identities=26%  Similarity=0.352  Sum_probs=60.1

Q ss_pred             ccCCCCCCCcccccCCCc--chhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976            6 LLPATSVTGVKWSRVQVK--GPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS   74 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~~--C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~   74 (89)
                      ...+|||+++||++|||+  |++.|+|+.         +++++.+..+.  ..+.++.+.+  ...++|+|||+|++|++
T Consensus        79 ~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~--~~~~~~~~~~--~~~~~VvIIGgGpaGl~  154 (457)
T PRK11749         79 ILETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAME--TGWVLFKRAP--KTGKKVAVIGAGPAGLT  154 (457)
T ss_pred             HHHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHh--cCCCCCCCCc--cCCCcEEEECCCHHHHH
Confidence            356799999999999999  999999763         45555555443  2222111111  12489999999999999


Q ss_pred             HHHHHHHCCCceEEc
Q 046976           75 TAVELLDHGHEVLLI   89 (89)
Q Consensus        75 aA~~L~~~G~~V~v~   89 (89)
                      +|..|+++|++|+||
T Consensus       155 aA~~l~~~g~~V~li  169 (457)
T PRK11749        155 AAHRLARKGYDVTIF  169 (457)
T ss_pred             HHHHHHhCCCeEEEE
Confidence            999999999999986

>PRK13984 putative oxidoreductase; Provisional

Probab=99.57  E-value=3.9e-15  Score=117.33  Aligned_cols=81  Identities=22%  Similarity=0.127  Sum_probs=58.8

Q ss_pred             cCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHHH
Q 046976            7 LPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAV   77 (89)
Q Consensus         7 ~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA~   77 (89)
                      ...||++.+||++||++||..|+|+.         +++++.+....  ..+..........+.++|+|||+|++|+++|.
T Consensus       223 ~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~  300 (604)
T PRK13984        223 YKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPV--EKYSEILDDEPEKKNKKVAIVGSGPAGLSAAY  300 (604)
T ss_pred             HhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHH--cCcccccCCCcccCCCeEEEECCCHHHHHHHH
Confidence            44799999999999999999999963         45555554321  11111001111123589999999999999999


Q ss_pred             HHHHCCCceEEc
Q 046976           78 ELLDHGHEVLLI   89 (89)
Q Consensus        78 ~L~~~G~~V~v~   89 (89)
                      .|+++|++|+||
T Consensus       301 ~L~~~G~~v~vi  312 (604)
T PRK13984        301 FLATMGYEVTVY  312 (604)
T ss_pred             HHHHCCCeEEEE
Confidence            999999999986

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.57  E-value=1.2e-15  Score=123.17  Aligned_cols=81  Identities=23%  Similarity=0.245  Sum_probs=59.0

Q ss_pred             ccCCCCCCCcccccCCC--cchhhccccchh----------hhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHH
Q 046976            6 LLPATSVTGVKWSRVQV--KGPRFHVRASLD----------TNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGM   73 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl   73 (89)
                      ...+|||+.+||+|||+  +|+..|+|..++          +++.|......  ..+ .+.......++|+|||+||||+
T Consensus       368 ~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~--~~~-~~~~~~~~~~~V~IIGaGpAGl  444 (752)
T PRK12778        368 LKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESG--NIS-VPEVAEKNGKKVAVIGSGPAGL  444 (752)
T ss_pred             HHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhC--CCC-CCCCCCCCCCEEEEECcCHHHH
Confidence            35679999999999996  899999997544          44444432211  111 1111112358999999999999


Q ss_pred             HHHHHHHHCCCceEEc
Q 046976           74 STAVELLDHGHEVLLI   89 (89)
Q Consensus        74 ~aA~~L~~~G~~V~v~   89 (89)
                      +||.+|+++|++|+||
T Consensus       445 ~aA~~l~~~G~~V~v~  460 (752)
T PRK12778        445 SFAGDLAKRGYDVTVF  460 (752)
T ss_pred             HHHHHHHHCCCeEEEE
Confidence            9999999999999986

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.50  E-value=2.7e-14  Score=110.88  Aligned_cols=79  Identities=24%  Similarity=0.313  Sum_probs=63.9

Q ss_pred             CCCCCCCcccccCCCc--chhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976            8 PATSVTGVKWSRVQVK--GPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA   76 (89)
Q Consensus         8 ~~~~~~~~~~~iC~~~--C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA   76 (89)
                      ..|+++.+|||+||+.  |+..|++.         .+++++.+.++.  ..+.+..++. ....++|+|||+||+||++|
T Consensus        63 ~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~--~g~i~~~~~~-~~tg~~VaviGaGPAGl~~a  139 (457)
T COG0493          63 KTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADR--EGWIPGELPG-SRTGKKVAVIGAGPAGLAAA  139 (457)
T ss_pred             HhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHH--hCCCCCCCCC-CCCCCEEEEECCCchHhhhH
Confidence            3467779999999977  99999985         378888888876  5555544321 12248999999999999999


Q ss_pred             HHHHHCCCceEEc
Q 046976           77 VELLDHGHEVLLI   89 (89)
Q Consensus        77 ~~L~~~G~~V~v~   89 (89)
                      ..|+++||+|+||
T Consensus       140 ~~L~~~G~~Vtv~  152 (457)
T COG0493         140 DDLSRAGHDVTVF  152 (457)
T ss_pred             HHHHhCCCeEEEe
Confidence            9999999999986

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.43  E-value=1.1e-13  Score=116.21  Aligned_cols=80  Identities=25%  Similarity=0.363  Sum_probs=65.4

Q ss_pred             cCCCCCCCcccccCCCcchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHHH
Q 046976            7 LPATSVTGVKWSRVQVKGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAV   77 (89)
Q Consensus         7 ~~~~~~~~~~~~iC~~~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA~   77 (89)
                      +--|-|++++||+||.+||..|+-+         ++|+.+.|.++.  ++|..|-++... ..++|+|||+||+||+||-
T Consensus      1726 l~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~--egwm~p~pp~~r-tg~~vaiigsgpaglaaad 1802 (2142)
T KOG0399|consen 1726 LETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFE--EGWMKPCPPAFR-TGKRVAIIGSGPAGLAAAD 1802 (2142)
T ss_pred             HhhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHH--hcCCccCCcccc-cCcEEEEEccCchhhhHHH
Confidence            3446678999999999999999886         467777788776  777665443222 2589999999999999999


Q ss_pred             HHHHCCCceEEc
Q 046976           78 ELLDHGHEVLLI   89 (89)
Q Consensus        78 ~L~~~G~~V~v~   89 (89)
                      .|-+.||.|+||
T Consensus      1803 qlnk~gh~v~vy 1814 (2142)
T KOG0399|consen 1803 QLNKAGHTVTVY 1814 (2142)
T ss_pred             HHhhcCcEEEEE
Confidence            999999999997

>PLN02487 zeta-carotene desaturase

Probab=98.78  E-value=1.3e-08  Score=81.09  Aligned_cols=59  Identities=85%  Similarity=1.235  Sum_probs=47.9

Q ss_pred             cchhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           31 ASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+++++.|......+.++++.+...+++.++|+|||+|++||++|+.|+++|++|+||
T Consensus        46 ~~l~r~~~d~~~~~~~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~  104 (569)
T PLN02487         46 SSLDSNVSDMSVNAPKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIY  104 (569)
T ss_pred             HHHHHHhhhhhccccccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEE
Confidence            36899999988875556666555444344579999999999999999999999999986

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.61  E-value=4.2e-08  Score=70.31  Aligned_cols=29  Identities=45%  Similarity=0.714  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|..|+++|++|+||
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~   30 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTII   30 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccc
Confidence            69999999999999999999999999986

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.56  E-value=5.4e-08  Score=70.65  Aligned_cols=29  Identities=34%  Similarity=0.541  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+||+||+||++|+++|.+|.||
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~   59 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIF   59 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEE
Confidence            59999999999999999999999999986

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.54  E-value=1.5e-07  Score=70.38  Aligned_cols=30  Identities=40%  Similarity=0.707  Sum_probs=28.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|..|+++|++|+||
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~   47 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALI   47 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEE
Confidence            489999999999999999999999999986

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.50  E-value=1.5e-07  Score=55.78  Aligned_cols=25  Identities=40%  Similarity=0.659  Sum_probs=23.1

Q ss_pred             EECCCHHHHHHHHHHHHCCCceEEc
Q 046976           65 IIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        65 IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      |||+|++||++|++|+++|++|+||
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~   25 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVF   25 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEE
Confidence            8999999999999999999999986

...

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.50  E-value=9.2e-08  Score=68.93  Aligned_cols=29  Identities=45%  Similarity=0.639  Sum_probs=25.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+||+||++|+++|++|.||
T Consensus        18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~   46 (230)
T PF01946_consen   18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVI   46 (230)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHTS-EEEE
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999986

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.49  E-value=1.3e-07  Score=71.42  Aligned_cols=30  Identities=43%  Similarity=0.653  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||||++||+.|+++|++|+||
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~Vlvl   32 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVL   32 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEE
Confidence            389999999999999999999999999986

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.45  E-value=3.2e-07  Score=71.00  Aligned_cols=30  Identities=50%  Similarity=0.706  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|..|+++|++|+|+
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~Vlll   68 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLI   68 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            489999999999999999999999999885

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.43  E-value=2.5e-07  Score=70.71  Aligned_cols=30  Identities=43%  Similarity=0.661  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|+.|+++|++|+|+
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~ll   34 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVI   34 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999986

>PRK09126 hypothetical protein; Provisional

Probab=98.43  E-value=2.5e-07  Score=68.75  Aligned_cols=29  Identities=41%  Similarity=0.601  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+||+|+++|+.|+++|++|+||
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~   32 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLI   32 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence            79999999999999999999999999986

>PRK07045 putative monooxygenase; Reviewed

Probab=98.43  E-value=2.7e-07  Score=68.81  Aligned_cols=30  Identities=37%  Similarity=0.555  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+||+|+++|..|+++|++|+||
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~   34 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVV   34 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEE
Confidence            379999999999999999999999999986

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.42  E-value=2.9e-07  Score=66.61  Aligned_cols=29  Identities=38%  Similarity=0.611  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|++||++|+++|++|+|+
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~~V~li   54 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVF   54 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCeEEEE
Confidence            79999999999999999999999999985

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.41  E-value=2.7e-07  Score=71.84  Aligned_cols=30  Identities=37%  Similarity=0.602  Sum_probs=28.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|+.||+||.+|+++|++|+||
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~Vl   32 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVL   32 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEE
Confidence            379999999999999999999999999996

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.41  E-value=3.2e-07  Score=68.58  Aligned_cols=29  Identities=31%  Similarity=0.685  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|..|+++|++|+||
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~   32 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVI   32 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence            69999999999999999999999999986

>PRK07236 hypothetical protein; Provisional

Probab=98.39  E-value=4.2e-07  Score=67.91  Aligned_cols=30  Identities=27%  Similarity=0.430  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||||++||++|..|+++|++|+||
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~   35 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVF   35 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            379999999999999999999999999986

>PRK10015 oxidoreductase; Provisional

Probab=98.39  E-value=3.4e-07  Score=70.16  Aligned_cols=30  Identities=37%  Similarity=0.658  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|++||+.|+++|++|+|+
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~Vlli   34 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVI   34 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            389999999999999999999999999985

>PRK06847 hypothetical protein; Provisional

Probab=98.39  E-value=4.4e-07  Score=66.93  Aligned_cols=29  Identities=41%  Similarity=0.652  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|++|+++|..|++.|++|+||
T Consensus         5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~   33 (375)
T PRK06847          5 KKVLIVGGGIGGLSAAIALRRAGIAVDLV   33 (375)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            69999999999999999999999999986

>PRK10262 thioredoxin reductase; Provisional

Probab=98.38  E-value=5.2e-07  Score=65.92  Aligned_cols=30  Identities=33%  Similarity=0.443  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+||+||.+|+++|++|++|
T Consensus         6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~i   35 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLI   35 (321)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCeEEE
Confidence            489999999999999999999999998875

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.38  E-value=3.6e-07  Score=68.47  Aligned_cols=29  Identities=41%  Similarity=0.684  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+||
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~vi   31 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLL   31 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEE
Confidence            69999999999999999999999999986

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.37  E-value=3.8e-07  Score=68.06  Aligned_cols=30  Identities=33%  Similarity=0.617  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|+.|+++|++|+|+
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~li   35 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALV   35 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEE
Confidence            479999999999999999999999999986

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.37  E-value=4.8e-07  Score=65.52  Aligned_cols=29  Identities=34%  Similarity=0.570  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|+.|+++|++|+|+
T Consensus        22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vl   50 (254)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVL   50 (254)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999985

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.37  E-value=4.7e-07  Score=68.05  Aligned_cols=29  Identities=48%  Similarity=0.741  Sum_probs=28.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+||||||+|+++|..|+++|++|+|+
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~   31 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLL   31 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            79999999999999999999999999986

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.37  E-value=4.2e-07  Score=67.32  Aligned_cols=30  Identities=40%  Similarity=0.687  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+||+|+++|+.|++.|++|+|+
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~   34 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALL   34 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            379999999999999999999999999986

>PRK08013 oxidoreductase; Provisional

Probab=98.37  E-value=4.3e-07  Score=68.34  Aligned_cols=29  Identities=31%  Similarity=0.597  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|+.|+++|++|+|+
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~vi   32 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVL   32 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEE
Confidence            79999999999999999999999999986

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.37  E-value=4.3e-07  Score=67.33  Aligned_cols=30  Identities=40%  Similarity=0.656  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC---CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH---GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~---G~~V~v~   89 (89)
                      .++|+|||+||+|+++|+.|+++   |++|+||
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~   35 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALI   35 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEE
Confidence            37999999999999999999998   9999986

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.37  E-value=5e-07  Score=68.05  Aligned_cols=29  Identities=34%  Similarity=0.515  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|+.|+++|++|+||
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~vi   31 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVIL   31 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEE
Confidence            69999999999999999999999999986

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.36  E-value=5.1e-07  Score=67.18  Aligned_cols=29  Identities=34%  Similarity=0.657  Sum_probs=28.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|||+|++|+++|..|+++|++|+||
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~   33 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLL   33 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEE
Confidence            79999999999999999999999999986

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.36  E-value=4.2e-07  Score=67.59  Aligned_cols=30  Identities=33%  Similarity=0.668  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|..|+++|++|+|+
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~li   34 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVL   34 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEE
Confidence            479999999999999999999999999986

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.36  E-value=5.5e-07  Score=71.00  Aligned_cols=31  Identities=55%  Similarity=0.837  Sum_probs=29.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        59 ~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.++|+|||||+|||+||..|.+.|++|+|+
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VL   44 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVL   44 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            3579999999999999999999999999986

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=5.5e-07  Score=67.02  Aligned_cols=29  Identities=38%  Similarity=0.572  Sum_probs=26.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v   88 (89)
                      .+||+|||+||+||+||.+++++|++ ++|
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li   32 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLI   32 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence            37999999999999999999999998 554

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.34  E-value=5.9e-07  Score=67.52  Aligned_cols=29  Identities=45%  Similarity=0.615  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|||||++|+++|+.|+++|++|+||
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~   31 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTII   31 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            68999999999999999999999999986

>PLN02985 squalene monooxygenase

Probab=98.33  E-value=7.7e-07  Score=69.95  Aligned_cols=30  Identities=37%  Similarity=0.571  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+|+
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vl   72 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVI   72 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            579999999999999999999999999986

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.33  E-value=6.5e-07  Score=67.11  Aligned_cols=29  Identities=38%  Similarity=0.480  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+||+|+++|+.|+++|++|+|+
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~   31 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVL   31 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence            69999999999999999999999999986

>PRK07208 hypothetical protein; Provisional

Probab=98.33  E-value=6.6e-07  Score=68.47  Aligned_cols=30  Identities=50%  Similarity=0.717  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||||++||+||++|+++|++|+|+
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~   33 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVL   33 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.33  E-value=5.8e-07  Score=66.81  Aligned_cols=30  Identities=37%  Similarity=0.665  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+||
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~li   36 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALV   36 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEE
Confidence            379999999999999999999999999986

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.33  E-value=8.2e-07  Score=69.87  Aligned_cols=30  Identities=43%  Similarity=0.659  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHH--CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD--HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~--~G~~V~v~   89 (89)
                      .++|+|||+||||++||..|++  .|++|+||
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~   57 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDII   57 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEE
Confidence            4799999999999999999997  79999997

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.32  E-value=7.4e-07  Score=68.57  Aligned_cols=30  Identities=30%  Similarity=0.612  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|++||..|+++|++|+|+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~li   31 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLV   31 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEe
Confidence            489999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.31  E-value=6.4e-07  Score=67.33  Aligned_cols=29  Identities=34%  Similarity=0.634  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|..|+++|++|+|+
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~vi   33 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVI   33 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEE
Confidence            69999999999999999999999999986

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.31  E-value=6.7e-07  Score=66.75  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+||+|+++|..|++.|++|+||
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~   30 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIF   30 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEe
Confidence            58999999999999999999999999986

>PRK08244 hypothetical protein; Provisional

Probab=98.31  E-value=7.6e-07  Score=68.70  Aligned_cols=29  Identities=38%  Similarity=0.496  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+||+|+++|..|+++|++|+|+
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~vi   31 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVI   31 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            69999999999999999999999999986

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.30  E-value=7.5e-07  Score=68.22  Aligned_cols=30  Identities=30%  Similarity=0.499  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|++||..++++|++|+++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~li   31 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIA   31 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            389999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06184 hypothetical protein; Provisional

Probab=98.30  E-value=8.3e-07  Score=68.71  Aligned_cols=29  Identities=41%  Similarity=0.631  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|||+||+||++|..|+++|++|+|+
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~vi   32 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLI   32 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999986

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.30  E-value=8.5e-07  Score=68.34  Aligned_cols=29  Identities=41%  Similarity=0.678  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++||+||.+|+++|++|+||
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vl   30 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLL   30 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            68999999999999999999999999986

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.29  E-value=8.7e-07  Score=67.48  Aligned_cols=30  Identities=33%  Similarity=0.547  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|..|+++|++|+|+
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~li   32 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALV   32 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            389999999999999999999999999985

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.29  E-value=8.9e-07  Score=67.48  Aligned_cols=30  Identities=47%  Similarity=0.602  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|.+|+++|++|+|+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~li   32 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALI   32 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999985

>PRK06116 glutathione reductase; Validated

Probab=98.29  E-value=8.6e-07  Score=67.73  Aligned_cols=30  Identities=30%  Similarity=0.480  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|++||..|+++|++|+|+
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~li   33 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALI   33 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999985

>PRK06185 hypothetical protein; Provisional

Probab=98.29  E-value=9.1e-07  Score=66.15  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~li   35 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVL   35 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            479999999999999999999999999986

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.29  E-value=8.6e-07  Score=69.99  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||||||||+||.+|+++|++|+||
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~li   33 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLII   33 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999986

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06126 hypothetical protein; Provisional

Probab=98.28  E-value=9.1e-07  Score=69.05  Aligned_cols=30  Identities=30%  Similarity=0.582  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+||+|+++|+.|+++|++|+||
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~vi   36 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILV   36 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>PRK05868 hypothetical protein; Validated

Probab=98.28  E-value=1e-06  Score=66.03  Aligned_cols=29  Identities=34%  Similarity=0.449  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|++|+++|+.|+++|++|+||
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~vi   30 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMV   30 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            58999999999999999999999999986

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.27  E-value=1e-06  Score=68.55  Aligned_cols=30  Identities=47%  Similarity=0.713  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++||+||.+|.+.|++|+||
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vf   39 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVF   39 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEE
Confidence            479999999999999999999999999986

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.27  E-value=1.1e-06  Score=68.75  Aligned_cols=30  Identities=23%  Similarity=0.448  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|++||.+|++.|++|+|+
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li  241 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMV  241 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999985

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.25  E-value=1.2e-06  Score=64.50  Aligned_cols=30  Identities=40%  Similarity=0.741  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+++|++|+++|.+|+|+
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vi   33 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVL   33 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEE
Confidence            479999999999999999999999999885

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.25  E-value=1.4e-06  Score=68.00  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++||||||+|++||.+|++.|++|+|+
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li  240 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIV  240 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999885

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.25  E-value=1.3e-06  Score=66.37  Aligned_cols=29  Identities=34%  Similarity=0.529  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC----CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH----GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~----G~~V~v~   89 (89)
                      +||+|||+|++||+||++|+++    |++|+||
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vl   35 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLV   35 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEE
Confidence            6999999999999999999999    9999986

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02576 protoporphyrinogen oxidase

Probab=98.24  E-value=1.3e-06  Score=67.13  Aligned_cols=30  Identities=37%  Similarity=0.660  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      .++|+|||||++||+||++|.++ |++|+||
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vl   42 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVT   42 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEE
Confidence            36999999999999999999999 9999986

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.24  E-value=1.3e-06  Score=67.34  Aligned_cols=29  Identities=31%  Similarity=0.470  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+.||..++++|++|+++
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~li   32 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVACV   32 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            79999999999999999999999999985

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.24  E-value=1.1e-06  Score=65.47  Aligned_cols=29  Identities=31%  Similarity=0.479  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      +||+|||+||+|+++|..|+++|  ++|+|+
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~li   32 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVV   32 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEE
Confidence            68999999999999999999996  899885

>PLN02463 lycopene beta cyclase

Probab=98.23  E-value=2.1e-06  Score=66.66  Aligned_cols=30  Identities=27%  Similarity=0.517  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|..|+++|++|.|+
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~li   57 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCI   57 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEe
Confidence            479999999999999999999999999885

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.22  E-value=1.5e-06  Score=67.17  Aligned_cols=30  Identities=43%  Similarity=0.713  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|||||.||..++++|++|+||
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~li   32 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLI   32 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEE
Confidence            379999999999999999999999999986

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.22  E-value=1.5e-06  Score=64.04  Aligned_cols=29  Identities=31%  Similarity=0.426  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|.+|+++|++|+++|++|+|+
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~li   32 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGL   32 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999985

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.22  E-value=1.5e-06  Score=66.44  Aligned_cols=30  Identities=30%  Similarity=0.529  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+.+|.+|+++|++|+++
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~li   34 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVI   34 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            489999999999999999999999999986

>PRK06370 mercuric reductase; Validated

Probab=98.22  E-value=1.5e-06  Score=66.62  Aligned_cols=30  Identities=37%  Similarity=0.497  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|++||.+|+++|++|+|+
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~li   34 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGMKVALI   34 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            389999999999999999999999999985

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=1.6e-06  Score=66.37  Aligned_cols=30  Identities=30%  Similarity=0.531  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|++||..|+++|++|+++
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~li   33 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIV   33 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999985

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.21  E-value=1.6e-06  Score=66.19  Aligned_cols=29  Identities=31%  Similarity=0.538  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|..|+++|++|+|+
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~li   30 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALV   30 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            79999999999999999999999999885

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.21  E-value=1.6e-06  Score=66.71  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|+++|..|+++|++|+++
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~li   33 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALV   33 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999885

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.21  E-value=1.7e-06  Score=64.88  Aligned_cols=29  Identities=38%  Similarity=0.677  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|.+|+++|++|++.|++|+|+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vl   30 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVF   30 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            49999999999999999999999999986

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.18  E-value=2e-06  Score=67.04  Aligned_cols=29  Identities=45%  Similarity=0.563  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||||++|+.+|+.|+++|++|+|+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~Li   31 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELY   31 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            69999999999999999999999999986

>PLN02697 lycopene epsilon cyclase

Probab=98.18  E-value=3.7e-06  Score=66.69  Aligned_cols=30  Identities=40%  Similarity=0.563  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|..|+++|++|+++
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LI  137 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLI  137 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEe
Confidence            489999999999999999999999999885

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.17  E-value=2.1e-06  Score=65.99  Aligned_cols=30  Identities=23%  Similarity=0.472  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|++||.+|+++|++|+++
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~li   33 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVV   33 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            379999999999999999999999999985

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.16  E-value=2.2e-06  Score=67.04  Aligned_cols=30  Identities=33%  Similarity=0.686  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+||+|+++|+.|++.|++|+||
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~vi   52 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLL   52 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            479999999999999999999999999986

>PRK06834 hypothetical protein; Provisional

Probab=98.14  E-value=2.9e-06  Score=66.17  Aligned_cols=29  Identities=34%  Similarity=0.452  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|||+||+|+++|..|+++|++|+|+
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vl   32 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIV   32 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999986

>PRK14694 putative mercuric reductase; Provisional

Probab=98.14  E-value=2.9e-06  Score=65.36  Aligned_cols=30  Identities=37%  Similarity=0.645  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|..|++.|++|+|+
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~li   35 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLI   35 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            589999999999999999999999999885

>PRK07190 hypothetical protein; Provisional

Probab=98.13  E-value=3.1e-06  Score=66.00  Aligned_cols=30  Identities=30%  Similarity=0.339  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+||+||++|..|+++|++|+|+
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~ll   34 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIV   34 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            379999999999999999999999999885

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.12  E-value=3.3e-06  Score=66.08  Aligned_cols=30  Identities=37%  Similarity=0.512  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+||+|+++|..|+++|++|+||
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~   39 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVL   39 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999986

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.12  E-value=5.5e-06  Score=63.71  Aligned_cols=30  Identities=30%  Similarity=0.626  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ..||+|||+|.+|+++|++|+++  |.+|+|+
T Consensus        24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vl   55 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVL   55 (460)
T ss_pred             eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEE
Confidence            47999999999999999999998  8999985

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.12  E-value=3.1e-06  Score=64.66  Aligned_cols=29  Identities=41%  Similarity=0.547  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|.+|++.|++|+|+
T Consensus         4 yDvvIIG~G~aGl~aA~~l~~~g~~v~li   32 (460)
T PRK06292          4 YDVIVIGAGPAGYVAARRAAKLGKKVALI   32 (460)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999875

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.11  E-value=3.2e-06  Score=66.00  Aligned_cols=29  Identities=38%  Similarity=0.660  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +|++|||+||+|++||..|+++|++|+|+
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G~~V~li   34 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHGKKVALF   34 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            79999999999999999999999999885

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.10  E-value=6e-06  Score=65.39  Aligned_cols=30  Identities=33%  Similarity=0.459  Sum_probs=26.5

Q ss_pred             CceEEEECCCHHHHHHHHHHH-HCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELL-DHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~-~~G~~V~v~   89 (89)
                      .++|+|||+||||+++|.+|. +.|++|+||
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~Vtlf   69 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIF   69 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEE
Confidence            479999999999999999764 679999986

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.10  E-value=6.4e-06  Score=66.26  Aligned_cols=30  Identities=27%  Similarity=0.483  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      ..+|+||||||+||++|..|++. |++|+||
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~Ii   62 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIV   62 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEE
Confidence            47999999999999999999995 9999986

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.10  E-value=3.7e-06  Score=68.40  Aligned_cols=30  Identities=30%  Similarity=0.588  Sum_probs=28.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||||++||++|+.|+++|++|+||
T Consensus        81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~  110 (668)
T PLN02927         81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVF  110 (668)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            579999999999999999999999999986

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.09  E-value=3.7e-06  Score=63.07  Aligned_cols=29  Identities=34%  Similarity=0.730  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      +||+|||||.+|+++|++|+++  |++|+|+
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~ll   33 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVL   33 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEE
Confidence            6999999999999999999999  9999986

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.08  E-value=4.8e-06  Score=64.44  Aligned_cols=30  Identities=40%  Similarity=0.586  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+.+|..|++.|++|+++
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~li   33 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCV   33 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999985

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.07  E-value=4.4e-06  Score=67.49  Aligned_cols=30  Identities=30%  Similarity=0.547  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||||+||+.||+.+++.|.+|.++
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~Li   33 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLL   33 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEE
Confidence            489999999999999999999999999885

>PTZ00367 squalene epoxidase; Provisional

Probab=98.07  E-value=5.3e-06  Score=66.21  Aligned_cols=30  Identities=33%  Similarity=0.567  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+|+
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~Vl   62 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLML   62 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            479999999999999999999999999986

>PRK13748 putative mercuric reductase; Provisional

Probab=98.07  E-value=4.7e-06  Score=65.21  Aligned_cols=30  Identities=43%  Similarity=0.688  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|+++|..|+++|++|+|+
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~li  127 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLI  127 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999885

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.06  E-value=5.5e-06  Score=69.48  Aligned_cols=30  Identities=33%  Similarity=0.612  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|||||+||.+|++.|++|+|+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~li  192 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILV  192 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            479999999999999999999999999986

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.06  E-value=4.7e-06  Score=66.87  Aligned_cols=29  Identities=41%  Similarity=0.617  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.+|+++|+.|+++|++|+|+
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~Vl  289 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLY  289 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEE
Confidence            69999999999999999999999999986

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.05  E-value=4.8e-06  Score=63.60  Aligned_cols=29  Identities=31%  Similarity=0.542  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC------CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH------GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~------G~~V~v~   89 (89)
                      ++|+|||||++||+||++|.+.      |++|+||
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vl   36 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILV   36 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEE
Confidence            4799999999999999999986      3789986

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.05  E-value=4.5e-06  Score=65.16  Aligned_cols=30  Identities=53%  Similarity=0.828  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|+|||.+|..|.+.|++|+||
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vf   35 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVF   35 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEE
Confidence            379999999999999999999999999986

>PLN02529 lysine-specific histone demethylase 1

Probab=98.05  E-value=7.6e-06  Score=67.24  Aligned_cols=30  Identities=43%  Similarity=0.752  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++||.||..|+++|++|+||
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~  189 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVL  189 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEE
Confidence            479999999999999999999999999986

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.04  E-value=5.5e-06  Score=63.49  Aligned_cols=29  Identities=34%  Similarity=0.594  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|++|++||+.++++|.+|+|+
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vl   33 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLL   33 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999985

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.02  E-value=1.3e-05  Score=60.17  Aligned_cols=30  Identities=33%  Similarity=0.514  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~-~V~v~   89 (89)
                      ..||+|||+|.+|+++|+.|+++ |+ +|+|+
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vl   61 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVL   61 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEE
Confidence            47999999999999999999995 95 89885

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.02  E-value=5.9e-06  Score=61.77  Aligned_cols=28  Identities=43%  Similarity=0.777  Sum_probs=27.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +|+|||+|++|++||+.|++.|++|+||
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~   30 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVF   30 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEE
Confidence            7999999999999999999999999997

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.01  E-value=6.9e-06  Score=63.53  Aligned_cols=29  Identities=45%  Similarity=0.877  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|.|||.||+.+++.|.+|+|+
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~li   30 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTII   30 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEE
Confidence            69999999999999999999999999985

>PRK07121 hypothetical protein; Validated

Probab=98.00  E-value=1.2e-05  Score=62.26  Aligned_cols=30  Identities=33%  Similarity=0.586  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.+|+.||+.++++|.+|+|+
T Consensus        20 ~~DVvVVGaG~AGl~AA~~aae~G~~Vill   49 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEAAAAGARVLVL   49 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            479999999999999999999999999985

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.00  E-value=7.4e-06  Score=63.29  Aligned_cols=30  Identities=33%  Similarity=0.529  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|++||.++++.|.+|+|+
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~li   33 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACI   33 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            379999999999999999999999999875

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.98  E-value=9e-06  Score=63.01  Aligned_cols=29  Identities=38%  Similarity=0.743  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|||||.+|+++|..|+++|++|+||
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~Vl   31 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVL   31 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence            58999999999999999999999999996

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.97  E-value=8.2e-06  Score=64.68  Aligned_cols=29  Identities=45%  Similarity=0.708  Sum_probs=24.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||||++||++|..|.+.|++|++|
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~f   30 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCF   30 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEE
Confidence            79999999999999999999999999986

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.97  E-value=1.5e-05  Score=47.65  Aligned_cols=28  Identities=43%  Similarity=0.729  Sum_probs=26.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +++|||+|+.|+..|..|++.|.+|+++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli   28 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLI   28 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEE
Confidence            6899999999999999999999999985

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02507 glutathione reductase

Probab=97.95  E-value=1e-05  Score=63.32  Aligned_cols=30  Identities=27%  Similarity=0.392  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|+.+|..+++.|.+|.++
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~li   54 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGIC   54 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            489999999999999999999999999885

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.95  E-value=1.1e-05  Score=61.75  Aligned_cols=29  Identities=34%  Similarity=0.555  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|++|+++|..|++.|.+|+|+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~vi   30 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVV   30 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            58999999999999999999999999985

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.94  E-value=1.8e-05  Score=58.85  Aligned_cols=30  Identities=50%  Similarity=0.504  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++|+.+|..|+++|++|++|
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~li   47 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVY   47 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999985

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.94  E-value=1.2e-05  Score=62.68  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||||.+|+++|+.|+++|++|+++
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~Ll   35 (502)
T PRK13369          6 TYDLFVIGGGINGAGIARDAAGRGLKVLLC   35 (502)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            379999999999999999999999999985

>PRK06996 hypothetical protein; Provisional

Probab=97.93  E-value=1.1e-05  Score=60.76  Aligned_cols=30  Identities=33%  Similarity=0.498  Sum_probs=26.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC----CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG----HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G----~~V~v~   89 (89)
                      .++|+|||+||+|+++|+.|++.|    ++|+|+
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~   44 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALI   44 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEe
Confidence            479999999999999999999997    368875

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.93  E-value=1.2e-05  Score=62.91  Aligned_cols=30  Identities=30%  Similarity=0.521  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||||.+|+.+|+.|+++|++|+|+
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~Lv   35 (508)
T PRK12266          6 TYDLLVIGGGINGAGIARDAAGRGLSVLLC   35 (508)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999985

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.93  E-value=1.1e-05  Score=63.63  Aligned_cols=30  Identities=30%  Similarity=0.465  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||||..|+++|+.|+++|++|+|+
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~Ll   35 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLRCILV   35 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999986

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.91  E-value=1.3e-05  Score=63.85  Aligned_cols=30  Identities=37%  Similarity=0.593  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.||+|||+|.|||.||+.++++|.+|+|+
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~li   32 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLF   32 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEE
Confidence            369999999999999999999999999985

>PLN02612 phytoene desaturase

Probab=97.91  E-value=2.4e-05  Score=62.19  Aligned_cols=30  Identities=60%  Similarity=0.841  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++||++|++|+++|++|+||
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~  122 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILL  122 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            479999999999999999999999999986

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.90  E-value=1.4e-05  Score=62.41  Aligned_cols=30  Identities=43%  Similarity=0.698  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.+|++||+.+++.|.+|+|+
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~Vivl   90 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVIL   90 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            479999999999999999999999999985

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.89  E-value=2.6e-05  Score=62.94  Aligned_cols=30  Identities=40%  Similarity=0.618  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~Vili   64 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVF   64 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEE
Confidence            379999999999999999999999999985

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.89  E-value=2.5e-05  Score=62.81  Aligned_cols=30  Identities=37%  Similarity=0.639  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC----CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH----GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~----G~~V~v~   89 (89)
                      .++++|||||.+||+||.+|++.    |++|+||
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIl   55 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITIL   55 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEE
Confidence            47999999999999999999996    6799986

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.88  E-value=2.2e-05  Score=65.17  Aligned_cols=30  Identities=40%  Similarity=0.739  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++|+.+|+.|+++|++|+|+
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~  267 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVL  267 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            579999999999999999999999999986

>PTZ00058 glutathione reductase; Provisional

Probab=97.88  E-value=2.4e-05  Score=62.36  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|+.||..+++.|.+|.++
T Consensus        48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValI   77 (561)
T PTZ00058         48 VYDLIVIGGGSGGMAAARRAARNKAKVALV   77 (561)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence            589999999999999999999999999875

>PLN02661 Putative thiazole synthesis

Probab=97.87  E-value=1.6e-05  Score=60.66  Aligned_cols=30  Identities=43%  Similarity=0.605  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      ..||+|||+|++|+.+|++|++. |++|+|+
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~vi  122 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAII  122 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEE
Confidence            37999999999999999999986 8999985

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.86  E-value=1.8e-05  Score=62.76  Aligned_cols=30  Identities=30%  Similarity=0.578  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|++|++||+.++++|.+|+|+
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~ll   38 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVL   38 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence            479999999999999999999999999985

>PLN02546 glutathione reductase

Probab=97.86  E-value=1.8e-05  Score=63.08  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|+.+|..++++|++|+++
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~li  108 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVC  108 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            479999999999999999999999999885

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.83  E-value=2.1e-05  Score=63.18  Aligned_cols=29  Identities=38%  Similarity=0.641  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.||+.||+.+++.|.+|+|+
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~li   37 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVV   37 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            79999999999999999999999999985

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.83  E-value=2.1e-05  Score=62.06  Aligned_cols=30  Identities=30%  Similarity=0.647  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G~~Vill   45 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAGRRVLVV   45 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999985

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.83  E-value=2.3e-05  Score=61.12  Aligned_cols=29  Identities=34%  Similarity=0.646  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +|++|||+||+|+.+|..+++.|.+|.++
T Consensus         3 yDvvVIG~G~aG~~aA~~aa~~G~~v~li   31 (484)
T TIGR01438         3 YDLIVIGGGSGGLAAAKEAADYGAKVMLL   31 (484)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999875

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.82  E-value=2.3e-05  Score=61.81  Aligned_cols=30  Identities=50%  Similarity=0.824  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.+||.||+.+++.|.+|+|+
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~Vivl   33 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLLL   33 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999985

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.81  E-value=2.3e-05  Score=62.55  Aligned_cols=29  Identities=34%  Similarity=0.629  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.|||.||+.+++.|.+|+|+
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vl   41 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVL   41 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999985

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.81  E-value=2.3e-05  Score=61.34  Aligned_cols=29  Identities=28%  Similarity=0.508  Sum_probs=27.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+| +|++||+.+++.|.+|+|+
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vl   35 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALV   35 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEE
Confidence            3799999999 9999999999999999985

>PLN02568 polyamine oxidase

Probab=97.80  E-value=2.7e-05  Score=61.78  Aligned_cols=29  Identities=34%  Similarity=0.671  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-----CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-----HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-----~~V~v~   89 (89)
                      .+|+|||+|++||++|.+|++.|     ++|+||
T Consensus         6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~   39 (539)
T PLN02568          6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVV   39 (539)
T ss_pred             CcEEEECCCHHHHHHHHHHHhcccccCCceEEEE
Confidence            69999999999999999999888     889886

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.79  E-value=2.5e-05  Score=62.37  Aligned_cols=30  Identities=30%  Similarity=0.546  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lv   41 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACI   41 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEE
Confidence            379999999999999999999999999885

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.78  E-value=2.9e-05  Score=62.48  Aligned_cols=30  Identities=30%  Similarity=0.534  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||||..|.++|+.|+++|++|+|+
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~Lv  100 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLV  100 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            489999999999999999999999999985

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.77  E-value=3e-05  Score=61.51  Aligned_cols=29  Identities=38%  Similarity=0.672  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.||+.||+.+++.|.+|+|+
T Consensus         6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lv   34 (566)
T PRK06452          6 YDAVVIGGGLAGLMSAHEIASAGFKVAVI   34 (566)
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999985

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.77  E-value=3.4e-05  Score=59.77  Aligned_cols=29  Identities=38%  Similarity=0.736  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+.+|+.|+++|++|+|+
T Consensus         3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi   31 (422)
T PRK05329          3 FDVLVIGGGLAGLTAALAAAEAGKRVALV   31 (422)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999885

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.76  E-value=3e-05  Score=60.65  Aligned_cols=30  Identities=47%  Similarity=0.703  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+|.+||.+|+.|.+.||+|+|+
T Consensus         7 ~~~viivGaGlaGL~AA~eL~kaG~~v~il   36 (450)
T COG1231           7 TADVIIVGAGLAGLSAAYELKKAGYQVQIL   36 (450)
T ss_pred             CCcEEEECCchHHHHHHHHHhhcCcEEEEE
Confidence            479999999999999999999999999985

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.76  E-value=3.1e-05  Score=61.83  Aligned_cols=29  Identities=34%  Similarity=0.639  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.|||.||+.+++.|.+|+|+
T Consensus         8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~ll   36 (588)
T PRK08958          8 FDAVVIGAGGAGMRAALQISQSGQSCALL   36 (588)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEE
Confidence            69999999999999999999999999985

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.76  E-value=3.1e-05  Score=62.20  Aligned_cols=30  Identities=30%  Similarity=0.526  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.||+.||+.+++.|.+|+|+
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lv   58 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACI   58 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEE
Confidence            379999999999999999999999999985

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.76  E-value=3.1e-05  Score=62.51  Aligned_cols=30  Identities=33%  Similarity=0.605  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~Vilv   79 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACI   79 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEE
Confidence            369999999999999999999999999985

>PRK14727 putative mercuric reductase; Provisional

Probab=97.76  E-value=3.5e-05  Score=59.68  Aligned_cols=30  Identities=43%  Similarity=0.738  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|+.+|..|+++|.+|+++
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~i   45 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTII   45 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999875

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.75  E-value=3.2e-05  Score=62.57  Aligned_cols=30  Identities=30%  Similarity=0.597  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.|||.||+.++++|.+|+|+
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~Vivl   34 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVL   34 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEE
Confidence            379999999999999999999999999985

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.75  E-value=3.4e-05  Score=61.52  Aligned_cols=30  Identities=43%  Similarity=0.763  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||||++|++||+.|++.|++|.++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LV  153 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLV  153 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEE
Confidence            479999999999999999999999999874

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.74  E-value=3.7e-05  Score=60.13  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      .+|++|||+||+|+.+|..++++ |.+|.++
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~li   33 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVI   33 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999997 8999875

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02676 polyamine oxidase

Probab=97.73  E-value=4.1e-05  Score=59.84  Aligned_cols=30  Identities=37%  Similarity=0.702  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ..+|+|||+|++||+||..|+++|+ +|+|+
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vl   56 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILIL   56 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEe
Confidence            3799999999999999999999998 58875

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.73  E-value=4.3e-05  Score=59.21  Aligned_cols=30  Identities=37%  Similarity=0.588  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~   89 (89)
                      ..+|+|||+|++|+++|+.|.++|.. ++||
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~   38 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIF   38 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence            47999999999999999999999997 7775

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.73  E-value=4e-05  Score=61.14  Aligned_cols=30  Identities=27%  Similarity=0.596  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.+|+.||+.++++|.+|+|+
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~Vivl   40 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLVV   40 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999985

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.72  E-value=3.6e-05  Score=61.67  Aligned_cols=29  Identities=34%  Similarity=0.599  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .||+|||+|.|||.||+.+++.  |.+|+|+
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~li   42 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIV   42 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEE
Confidence            7999999999999999999998  9999985

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.71  E-value=3.9e-05  Score=60.85  Aligned_cols=29  Identities=34%  Similarity=0.622  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC---CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG---HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G---~~V~v~   89 (89)
                      .||+|||+|.|||.||+.+++.|   .+|+|+
T Consensus         6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~ll   37 (577)
T PRK06069          6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVV   37 (577)
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCCcEEEE
Confidence            69999999999999999999998   899875

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.68  E-value=5.7e-05  Score=56.97  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=26.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ++|+|||+|++|+.+|..|+++|+  +|+++
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li   34 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLF   34 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEe
Confidence            689999999999999999999987  56664

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.68  E-value=3e-05  Score=59.76  Aligned_cols=29  Identities=41%  Similarity=0.709  Sum_probs=26.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+|.+||+||+.|+++ ++|++|
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLf   36 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLF   36 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEE
Confidence            47999999999999999999976 788886

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.68  E-value=5.4e-05  Score=58.49  Aligned_cols=29  Identities=31%  Similarity=0.541  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|++|+.+|..++++|++|+++
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~   30 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVI   30 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            58999999999999999999999999885

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.67  E-value=5.3e-05  Score=61.61  Aligned_cols=30  Identities=30%  Similarity=0.709  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|..+|..+++.|.+|+|+
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~li  145 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIF  145 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999885

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.67  E-value=5.7e-05  Score=59.87  Aligned_cols=30  Identities=33%  Similarity=0.612  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.+|+++|+.++++|.+|+|+
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~li   35 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIV   35 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999985

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.65  E-value=5.4e-05  Score=60.09  Aligned_cols=29  Identities=34%  Similarity=0.572  Sum_probs=26.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      .||+|||+|.||+.||+.++++|  .+|+|+
T Consensus         4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vl   34 (575)
T PRK05945          4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVV   34 (575)
T ss_pred             ccEEEECccHHHHHHHHHHHHhcCCCcEEEE
Confidence            69999999999999999999875  799885

>TIGR00551 nadB L-aspartate oxidase

Probab=97.63  E-value=6.7e-05  Score=58.31  Aligned_cols=28  Identities=43%  Similarity=0.812  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.|||.||+.+++.|. |+|+
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~ll   30 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQGR-VIVL   30 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCCC-EEEE
Confidence            699999999999999999999997 8774

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08275 putative oxidoreductase; Provisional

Probab=97.62  E-value=6.1e-05  Score=59.51  Aligned_cols=30  Identities=30%  Similarity=0.529  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ..||+|||+|.||+.||+.+++.  |.+|+|+
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~Vilv   40 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLL   40 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEE
Confidence            37999999999999999999987  6899875

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.61  E-value=7.7e-05  Score=59.10  Aligned_cols=30  Identities=27%  Similarity=0.575  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|++|+.+|+.++++|.+|+|+
T Consensus         7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~ll   36 (557)
T PRK07843          7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVV   36 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999985

>PRK02106 choline dehydrogenase; Validated

Probab=97.58  E-value=9e-05  Score=58.45  Aligned_cols=30  Identities=40%  Similarity=0.486  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      .+|++|||+|.+|+.+|..|++ .|++|+|+
T Consensus         5 ~~D~iIVG~G~aG~vvA~rLae~~g~~Vlvl   35 (560)
T PRK02106          5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLL   35 (560)
T ss_pred             cCcEEEECCcHHHHHHHHHHHhCCCCeEEEe
Confidence            3799999999999999999999 89999986

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.57  E-value=7.9e-05  Score=58.68  Aligned_cols=28  Identities=39%  Similarity=0.695  Sum_probs=26.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.||+.||+.+ +.|.+|+|+
T Consensus         8 ~DVlVVG~G~AGl~AAi~A-~~G~~Vill   35 (543)
T PRK06263          8 TDVLIIGSGGAGARAAIEA-ERGKNVVIV   35 (543)
T ss_pred             cCEEEECccHHHHHHHHHH-hcCCCEEEE
Confidence            7999999999999999999 999999985

>PLN02815 L-aspartate oxidase

Probab=97.57  E-value=8e-05  Score=59.75  Aligned_cols=29  Identities=34%  Similarity=0.662  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.|||.||+.+++.| +|+|+
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~Vvll   57 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAII   57 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEE
Confidence            379999999999999999999999 88874

>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=97.57  E-value=7.9e-06  Score=53.00  Aligned_cols=26  Identities=8%  Similarity=-0.161  Sum_probs=19.2

Q ss_pred             cCCCCCCCcccccCCCc--chhhccccc
Q 046976            7 LPATSVTGVKWSRVQVK--GPRFHVRAS   32 (89)
Q Consensus         7 ~~~~~~~~~~~~iC~~~--C~~~c~r~~   32 (89)
                      ..+|||+++||+|||++  ||..|+|+.
T Consensus        62 ~~~np~p~vcGrvCp~p~~Ce~~C~r~~   89 (111)
T PF14691_consen   62 REDNPFPAVCGRVCPHPKQCESACRRGK   89 (111)
T ss_dssp             HHH-TTHHHHHHH--GGGSGGGG-GGGS
T ss_pred             HHhCCCcccccCCCCCcchHHHHccCCC
Confidence            45689999999999999  999999963

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.54  E-value=9.5e-05  Score=61.57  Aligned_cols=30  Identities=40%  Similarity=0.668  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~ll   42 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLL   42 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999985

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.54  E-value=9.4e-05  Score=58.12  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ..||+|||||+.|++.|++|++.  |++|+|+
T Consensus         5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~Vl   36 (494)
T PRK05257          5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMF   36 (494)
T ss_pred             cceEEEECcHHHHHHHHHHHHHhCCCCeEEEE
Confidence            47999999999999999999985  7899885

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.52  E-value=0.00017  Score=57.34  Aligned_cols=30  Identities=40%  Similarity=0.648  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.+|+.+|+.++++|++|+|+
T Consensus        12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~i   41 (581)
T PRK06134         12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVV   41 (581)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            479999999999999999999999999885

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.51  E-value=0.00011  Score=57.70  Aligned_cols=28  Identities=39%  Similarity=0.623  Sum_probs=25.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.||+.||+.+++ |.+|+|+
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lv   31 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-EYNVIII   31 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-CCCEEEE
Confidence            699999999999999999976 8999885

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.51  E-value=0.00011  Score=56.61  Aligned_cols=28  Identities=32%  Similarity=0.667  Sum_probs=25.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.|||.||+.++ .|.+|+|+
T Consensus         5 ~DVvVVG~G~AGl~AA~~a~-~G~~V~ll   32 (433)
T PRK06175          5 ADVLIVGSGVAGLYSALNLR-KDLKILMV   32 (433)
T ss_pred             ccEEEECchHHHHHHHHHhc-cCCCEEEE
Confidence            79999999999999999974 79999985

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.51  E-value=0.00011  Score=57.14  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|.+|+.+|..|++.|++|+++
T Consensus         4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhl   33 (443)
T PTZ00363          4 TYDVIVCGTGLKECILSGLLSVNGKKVLHM   33 (443)
T ss_pred             cceEEEECCChHHHHHHhhhhhCCCEEEEe
Confidence            489999999999999999999999999875

>PLN03000 amine oxidase

Probab=97.49  E-value=0.00014  Score=61.01  Aligned_cols=30  Identities=40%  Similarity=0.739  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+|++|+.+|..|.+.|++|+||
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~Vl  213 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVL  213 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999986

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.49  E-value=0.00012  Score=58.33  Aligned_cols=29  Identities=38%  Similarity=0.570  Sum_probs=26.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      .||+|||+|.|||.||+.+++.|  .+|+|+
T Consensus         5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~ll   35 (582)
T PRK09231          5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALI   35 (582)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEE
Confidence            69999999999999999999874  789875

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.49  E-value=0.00014  Score=55.86  Aligned_cols=29  Identities=38%  Similarity=0.735  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||||.||+++++.|.++|.++.++
T Consensus         3 fDv~IIGGGLAGltc~l~l~~~Gk~c~iv   31 (421)
T COG3075           3 FDVAIIGGGLAGLTCGLALQQAGKRCAIV   31 (421)
T ss_pred             ccEEEEcCcHHHHHHHHHHHhcCCcEEEE
Confidence            79999999999999999999999988764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.48  E-value=0.00013  Score=58.28  Aligned_cols=29  Identities=38%  Similarity=0.566  Sum_probs=26.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .||+|||+|.|||.||+.++++  |.+|+|+
T Consensus         4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lv   34 (580)
T TIGR01176         4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALI   34 (580)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEE
Confidence            6999999999999999999987  5788875

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.47  E-value=0.00015  Score=56.80  Aligned_cols=29  Identities=38%  Similarity=0.559  Sum_probs=26.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+|++|||+||+|..+|..+++.|.+|.+
T Consensus         4 ~yDvvVIG~GpaG~~aA~raa~~G~kval   32 (454)
T COG1249           4 EYDVVVIGAGPAGYVAAIRAAQLGLKVAL   32 (454)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999999999999655

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.0001  Score=57.19  Aligned_cols=28  Identities=25%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVL   87 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~   87 (89)
                      .+||+|||+||||-+||.|.+|+|.+.-
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTG  238 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTG  238 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhh
Confidence            5899999999999999999999998753

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.47  E-value=0.00026  Score=56.36  Aligned_cols=30  Identities=47%  Similarity=0.640  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.+|+.+|+.++++|++|+|+
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~   45 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLV   45 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999885

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.46  E-value=0.00015  Score=58.06  Aligned_cols=30  Identities=37%  Similarity=0.659  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.|||.||..++++|.+|.++
T Consensus         6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~   35 (562)
T COG1053           6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALL   35 (562)
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCcEEEE
Confidence            479999999999999999999999999885

>PRK12839 hypothetical protein; Provisional

Probab=97.46  E-value=0.0002  Score=57.13  Aligned_cols=30  Identities=33%  Similarity=0.607  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.+|+++|+.++++|.+|+|+
T Consensus         8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~i   37 (572)
T PRK12839          8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVV   37 (572)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999885

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.46  E-value=0.00013  Score=58.01  Aligned_cols=29  Identities=34%  Similarity=0.493  Sum_probs=26.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.||+.||+.++ .|.+|+|+
T Consensus         9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~li   37 (553)
T PRK07395          9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLI   37 (553)
T ss_pred             cCCEEEECccHHHHHHHHHhh-cCCCEEEE
Confidence            379999999999999999986 59999885

>PRK11445 putative oxidoreductase; Provisional

Probab=97.43  E-value=0.00012  Score=54.30  Aligned_cols=22  Identities=45%  Similarity=0.493  Sum_probs=20.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH   82 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~   82 (89)
                      +||+|||+||+|+++|..|+++
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~   23 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK   23 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc
Confidence            6999999999999999999874

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.42  E-value=0.00018  Score=61.57  Aligned_cols=30  Identities=40%  Similarity=0.719  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.||+.||+.+++.|.+|+|+
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~Vivl  438 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILL  438 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999985

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.41  E-value=0.00019  Score=56.68  Aligned_cols=30  Identities=27%  Similarity=0.453  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      .+||+|||||..|+++|++|++.+  .+|+|+
T Consensus        45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~Vl   76 (497)
T PTZ00383         45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALI   76 (497)
T ss_pred             cccEEEECccHHHHHHHHHHHhhCCCCEEEEE
Confidence            489999999999999999999964  588875

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.41  E-value=0.00018  Score=57.24  Aligned_cols=28  Identities=36%  Similarity=0.506  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.||+.||+.+++. .+|+|+
T Consensus         6 ~DVlVIG~G~AGl~AAl~aa~~-~~Vill   33 (583)
T PRK08205          6 YDVVIVGAGGAGMRAAIEAGPR-ARTAVL   33 (583)
T ss_pred             ccEEEECccHHHHHHHHHHHhC-CCEEEE
Confidence            6999999999999999999986 899885

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.40  E-value=0.00021  Score=54.72  Aligned_cols=29  Identities=17%  Similarity=0.394  Sum_probs=25.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ++|+|||+|++|+.+|..|++.  +++|+|+
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li   32 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIF   32 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEE
Confidence            5899999999999999999987  5688875

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.37  E-value=0.00022  Score=56.20  Aligned_cols=29  Identities=41%  Similarity=0.694  Sum_probs=26.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.||+.||+.+++. .+|+|+
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~~Vilv   36 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVL   36 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-CCEEEE
Confidence            37999999999999999999986 899875

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.36  E-value=0.00023  Score=56.25  Aligned_cols=29  Identities=48%  Similarity=0.942  Sum_probs=25.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .+|+|||+|.|||+||..|-+.|. +++||
T Consensus        22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~Il   51 (498)
T KOG0685|consen   22 AKIVIIGAGIAGLAAATRLLENGFIDVLIL   51 (498)
T ss_pred             ceEEEECCchHHHHHHHHHHHhCCceEEEE
Confidence            699999999999999999998876 66664

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.36  E-value=0.00024  Score=55.83  Aligned_cols=29  Identities=31%  Similarity=0.619  Sum_probs=26.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|+|||.+||.+|++|++++-+|+|
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i   39 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTI   39 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceE
Confidence            58999999999999999999999988765

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.34  E-value=0.00029  Score=55.64  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ..||+|||||.+|+++|+.|++.  |.+|+|+
T Consensus         6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vl   37 (497)
T PRK13339          6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVV   37 (497)
T ss_pred             cCCEEEECchHHHHHHHHHHHhCCCCCeEEEE
Confidence            37999999999999999999999  8899885

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.31  E-value=0.00027  Score=56.35  Aligned_cols=29  Identities=28%  Similarity=0.653  Sum_probs=27.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+| +|++||+.+++.|.+|+|+
T Consensus        16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~   44 (564)
T PRK12845         16 TVDLLVVGSG-TGMAAALAAHELGLSVLIV   44 (564)
T ss_pred             eeCEEEECCc-HHHHHHHHHHHCCCcEEEE
Confidence            4899999999 8999999999999999885

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.31  E-value=0.00036  Score=53.30  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +++|+|||+|.+|+.+|..|.+.+++|+|+
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI   39 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVI   39 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEE
Confidence            579999999999999999998778899885

>PLN02976 amine oxidase

Probab=97.26  E-value=0.00034  Score=61.59  Aligned_cols=30  Identities=33%  Similarity=0.634  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++|+++|+.|.++|++|+||
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~Vl  722 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVL  722 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999986

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.21  E-value=0.00041  Score=53.81  Aligned_cols=30  Identities=47%  Similarity=0.806  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+|.+||.||..|+++|.+|+|+
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~il   34 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLIL   34 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEE
Confidence            379999999999999999999999999885

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.20  E-value=0.00038  Score=53.47  Aligned_cols=30  Identities=47%  Similarity=0.758  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+++|||+|.-|+++|+.|+++|.+++++
T Consensus         7 ~~~viiVGAGVfG~stAyeLaK~g~killL   36 (399)
T KOG2820|consen    7 SRDVIIVGAGVFGLSTAYELAKRGDKILLL   36 (399)
T ss_pred             ceeEEEEcccccchHHHHHHHhcCCeEEEE
Confidence            479999999999999999999999888764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.19  E-value=0.00058  Score=52.70  Aligned_cols=30  Identities=33%  Similarity=0.641  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+.+|..|+++|++|+++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~   45 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVV   45 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            368999999999999999999999999874

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.19  E-value=0.00028  Score=56.87  Aligned_cols=30  Identities=33%  Similarity=0.585  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|.||..||+..++.|.++.++
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLl   33 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLL   33 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEE
Confidence            389999999999999999999999998874

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.18  E-value=0.00059  Score=50.03  Aligned_cols=29  Identities=34%  Similarity=0.558  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|+|+|+.|+.+|..|+++|++|+++
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~  165 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLI  165 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence            69999999999999999999999999985

>PRK09897 hypothetical protein; Provisional

Probab=97.15  E-value=0.00059  Score=54.38  Aligned_cols=29  Identities=34%  Similarity=0.565  Sum_probs=25.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ++|+|||+|++|+++|..|.+.+.  +|+||
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lf   32 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIF   32 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEE
Confidence            589999999999999999998654  77775

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.11  E-value=0.00047  Score=54.19  Aligned_cols=28  Identities=32%  Similarity=0.584  Sum_probs=24.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.|||.||+.++  |.+|+|+
T Consensus         9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~ll   36 (513)
T PRK07512          9 TGRPVIVGGGLAGLMAALKLA--PRPVVVL   36 (513)
T ss_pred             cCCEEEECchHHHHHHHHHhC--cCCEEEE
Confidence            379999999999999999997  5688874

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.07  E-value=0.00091  Score=51.03  Aligned_cols=30  Identities=37%  Similarity=0.556  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|..|+.+|..|+++|++|+++
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~   34 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILT   34 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999999874

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.05  E-value=0.00064  Score=53.22  Aligned_cols=30  Identities=40%  Similarity=0.593  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|.+|.+.|+.|++.|.+|+|+
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVI   74 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVI   74 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEE
Confidence            479999999999999999999999999985

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.02  E-value=0.00092  Score=49.97  Aligned_cols=29  Identities=24%  Similarity=0.389  Sum_probs=24.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ++++|||+|+||+.+|..|++++.  +|+|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi   33 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLI   33 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEE
Confidence            589999999999999999988654  66664

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.99  E-value=0.001  Score=44.90  Aligned_cols=30  Identities=27%  Similarity=0.483  Sum_probs=26.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.++..+|..|++.|.+|+++
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~  196 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLV  196 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEE
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEE
Confidence            489999999999999999999999999875

...

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.99  E-value=0.00054  Score=54.45  Aligned_cols=27  Identities=41%  Similarity=0.694  Sum_probs=25.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ||+|||+|.|||++|+.|++. ++|+|+
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vl   35 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVL   35 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEE
Confidence            899999999999999999988 899875

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.99  E-value=0.00093  Score=53.45  Aligned_cols=30  Identities=30%  Similarity=0.587  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||||..|+..|..++.+|++|+++
T Consensus        12 ~~DviVIGGGitG~GiArDaA~RGl~v~Lv   41 (532)
T COG0578          12 EFDVIVIGGGITGAGIARDAAGRGLKVALV   41 (532)
T ss_pred             CCCEEEECCchhhHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999875

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.98  E-value=0.00098  Score=52.05  Aligned_cols=30  Identities=40%  Similarity=0.574  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      .+||+|||||..|++.|+.|++.+  ++|+|+
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~ll   34 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALL   34 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCceEEEE
Confidence            379999999999999999999998  899875

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.97  E-value=0.00061  Score=52.47  Aligned_cols=29  Identities=38%  Similarity=0.615  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..|.|||+|.||..|||.++++|.+|.+|
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~   32 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILY   32 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEE
Confidence            57899999999999999999999999875

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.95  E-value=0.00077  Score=53.55  Aligned_cols=30  Identities=37%  Similarity=0.566  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+|.+|...|..|++.|++|+|+
T Consensus         7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllL   36 (542)
T COG2303           7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVL   36 (542)
T ss_pred             CCCEEEECCCchhHHHHHHhcCCCCeEEEE
Confidence            489999999999999999999999999985

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.94  E-value=0.0012  Score=50.46  Aligned_cols=29  Identities=34%  Similarity=0.557  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .|++|||+|.+|+..|..|++.|++|+|+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIv   30 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIV   30 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEE
Confidence            68999999999999999999999999985

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.89  E-value=0.0014  Score=51.13  Aligned_cols=29  Identities=38%  Similarity=0.555  Sum_probs=25.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .+|.|||+||||+++|..|.++  +.+|+||
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~   51 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIF   51 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEee
Confidence            5999999999999999999985  5788875

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.82  E-value=0.002  Score=48.58  Aligned_cols=29  Identities=31%  Similarity=0.447  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv  173 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVI  173 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            68999999999999999999999999975

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.76  E-value=0.003  Score=42.81  Aligned_cols=30  Identities=33%  Similarity=0.393  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||||..|..-+..|.+.|++|+|+
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VI   42 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVV   42 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            489999999999999999999999999985

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.76  E-value=0.0023  Score=47.83  Aligned_cols=30  Identities=33%  Similarity=0.616  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+.+|..|+++|.+|+++
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv  170 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLV  170 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            368999999999999999999999999875

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.76  E-value=0.0023  Score=49.35  Aligned_cols=29  Identities=34%  Similarity=0.573  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|++|+.+|..|++.|.+|+++
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli  209 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVV  209 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            69999999999999999999999999875

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.74  E-value=0.0025  Score=48.62  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|++|+..|..|++.|.+|+++
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli  186 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVL  186 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            368999999999999999999999999985

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.74  E-value=0.0013  Score=41.37  Aligned_cols=30  Identities=30%  Similarity=0.462  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|..-+..|.+.|.+|+|+
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vi   36 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVI   36 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999999985

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.71  E-value=0.0032  Score=44.36  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|...+..|.+.|.+|+|+
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVv   38 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVI   38 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999999985

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.0019  Score=47.70  Aligned_cols=29  Identities=31%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||+||++-.||.|++++.++.++|
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllf   37 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLF   37 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEE
Confidence            58999999999999999999999988876

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=96.66  E-value=0.0015  Score=51.78  Aligned_cols=24  Identities=42%  Similarity=0.671  Sum_probs=21.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHC
Q 046976           59 PKLKVAIIGAGLAGMSTAVELLDH   82 (89)
Q Consensus        59 ~~~~v~IvG~G~aGl~aA~~L~~~   82 (89)
                      ...||+|||+|||||+||..|.+.
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQl   98 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQL   98 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHH
Confidence            358999999999999999998763

>PLN02785 Protein HOTHEAD

Probab=96.64  E-value=0.0022  Score=51.51  Aligned_cols=29  Identities=31%  Similarity=0.505  Sum_probs=26.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+|.+|+..|..|++ +++|+|+
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLll   83 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLL   83 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEE
Confidence            4899999999999999999999 5899875

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.59  E-value=0.0036  Score=47.43  Aligned_cols=29  Identities=41%  Similarity=0.631  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|++|+.+|..|++.|.+|+++
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli  166 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLI  166 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            69999999999999999999999999875

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.57  E-value=0.0035  Score=47.88  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|++|+.+|..|++.|.+|+++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli  199 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVI  199 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            369999999999999999999999999875

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02053 MerA mercuric reductase

Probab=96.56  E-value=0.0036  Score=48.06  Aligned_cols=29  Identities=31%  Similarity=0.513  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|.+|+..|..|++.|.+|+++
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli  195 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTIL  195 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            69999999999999999999999999985

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.52  E-value=0.0042  Score=47.62  Aligned_cols=29  Identities=28%  Similarity=0.487  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli  201 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIV  201 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            68999999999999999999999999875

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.50  E-value=0.0029  Score=49.66  Aligned_cols=29  Identities=24%  Similarity=0.415  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+|++|||+||.|..||...++.|++..+
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlkTac   67 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLKTAC   67 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcceeEE
Confidence            48999999999999999999999998765

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.49  E-value=0.0049  Score=45.45  Aligned_cols=29  Identities=38%  Similarity=0.416  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|+|+|..|...|.+|++.|++|+++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv   31 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLI   31 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            68999999999999999999999999874

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.48  E-value=0.0058  Score=42.90  Aligned_cols=30  Identities=30%  Similarity=0.544  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|...+..|.+.|.+|+|+
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VI   39 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVI   39 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            479999999999999999999999999885

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.47  E-value=0.0054  Score=41.49  Aligned_cols=30  Identities=33%  Similarity=0.379  Sum_probs=26.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|.+|..|+..|...|.+|+++
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~   49 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVP   49 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEE
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEec
Confidence            379999999999999999999999999874

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06370 mercuric reductase; Validated

Probab=96.47  E-value=0.0047  Score=47.48  Aligned_cols=30  Identities=33%  Similarity=0.485  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli  200 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVI  200 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999875

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.46  E-value=0.0059  Score=44.93  Aligned_cols=30  Identities=27%  Similarity=0.424  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|...|..|++.|++|+++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~   34 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFL   34 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999874

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.45  E-value=0.0049  Score=47.17  Aligned_cols=30  Identities=27%  Similarity=0.458  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli  198 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVF  198 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            369999999999999999999999999885

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.45  E-value=0.0029  Score=50.89  Aligned_cols=30  Identities=33%  Similarity=0.521  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||||.||..||...++.|-+.+++
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLl   57 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLL   57 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEe
Confidence            589999999999999999999999887764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.45  E-value=0.0049  Score=47.65  Aligned_cols=30  Identities=23%  Similarity=0.432  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtli  203 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVV  203 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999875

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.45  E-value=0.0047  Score=47.58  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|++|+..|..|.+.|.+|+++
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli  199 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIV  199 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            68999999999999999999999999875

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=96.45  E-value=0.005  Score=47.10  Aligned_cols=30  Identities=33%  Similarity=0.394  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli  204 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLI  204 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999885

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.44  E-value=0.0051  Score=47.18  Aligned_cols=29  Identities=28%  Similarity=0.433  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli  177 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLI  177 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            68999999999999999999999999985

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.43  E-value=0.008  Score=39.39  Aligned_cols=30  Identities=30%  Similarity=0.447  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~   89 (89)
                      .++++|+|+|-+|..++.+|.+.|.+ ++|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~   42 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIV   42 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEE
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEE
Confidence            48999999999999999999999986 7764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.43  E-value=0.0052  Score=47.63  Aligned_cols=29  Identities=21%  Similarity=0.464  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv  203 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVV  203 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            69999999999999999999999999985

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.41  E-value=0.0051  Score=45.23  Aligned_cols=29  Identities=52%  Similarity=0.618  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~   31 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLW   31 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEE
Confidence            47999999999999999999999999885

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.40  E-value=0.0056  Score=47.22  Aligned_cols=29  Identities=34%  Similarity=0.457  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli  195 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLV  195 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            69999999999999999999999999975

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.38  E-value=0.006  Score=44.36  Aligned_cols=29  Identities=28%  Similarity=0.472  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|+++|++|+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~   30 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLV   30 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEE
Confidence            47999999999999999999999999875

>PRK07846 mycothione reductase; Reviewed

Probab=96.36  E-value=0.0059  Score=47.15  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli  195 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVV  195 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            69999999999999999999999999985

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.33  E-value=0.0064  Score=44.23  Aligned_cols=29  Identities=31%  Similarity=0.491  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|+++|++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~   32 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIY   32 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            58999999999999999999999999875

>PRK14694 putative mercuric reductase; Provisional

Probab=96.33  E-value=0.0062  Score=47.00  Aligned_cols=30  Identities=20%  Similarity=0.374  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv  207 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVL  207 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            369999999999999999999999999885

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.31  E-value=0.0065  Score=46.83  Aligned_cols=29  Identities=34%  Similarity=0.501  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv  201 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIV  201 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence            69999999999999999999999999874

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.30  E-value=0.0067  Score=44.69  Aligned_cols=29  Identities=31%  Similarity=0.508  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|+++|++|+++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~   31 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLI   31 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999999875

>PRK13748 putative mercuric reductase; Provisional

Probab=96.29  E-value=0.0065  Score=47.66  Aligned_cols=29  Identities=21%  Similarity=0.440  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli  299 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTIL  299 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            69999999999999999999999999985

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.28  E-value=0.0077  Score=45.74  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|++|+..|..|.+.|.+|+++
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli  178 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRII  178 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence            68999999999999999999999999875

>TIGR03452 mycothione_red mycothione reductase

Probab=96.28  E-value=0.0067  Score=46.81  Aligned_cols=29  Identities=21%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli  198 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIV  198 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            69999999999999999999999999985

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.28  E-value=0.0067  Score=46.84  Aligned_cols=30  Identities=30%  Similarity=0.401  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+-+|..|.+.|.+|+++
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv  301 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCL  301 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            479999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.27  E-value=0.0071  Score=46.85  Aligned_cols=29  Identities=34%  Similarity=0.540  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|+.|+..|..|++.|.+|+++
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli  212 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTIL  212 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            69999999999999999999999999975

>PRK12831 putative oxidoreductase; Provisional

Probab=96.26  E-value=0.0067  Score=47.16  Aligned_cols=30  Identities=37%  Similarity=0.516  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+-+|..|.+.|.+|+++
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv  310 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRLGAEVHIV  310 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCEEEEE
Confidence            479999999999999999999999999875

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.26  E-value=0.0056  Score=51.19  Aligned_cols=29  Identities=31%  Similarity=0.647  Sum_probs=25.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC----CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH----GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~----G~~V~v~   89 (89)
                      ++|+|||+|++|+.+|..|.++    +++|+||
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi   36 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVF   36 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEE
Confidence            5899999999999999999765    4788885

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.24  E-value=0.0074  Score=47.28  Aligned_cols=29  Identities=34%  Similarity=0.400  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli  211 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVA  211 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            58999999999999999999999999985

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.22  E-value=0.0022  Score=48.74  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=27.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHCC------CceEEc
Q 046976           59 PKLKVAIIGAGLAGMSTAVELLDHG------HEVLLI   89 (89)
Q Consensus        59 ~~~~v~IvG~G~aGl~aA~~L~~~G------~~V~v~   89 (89)
                      +.++|.|||||..|.-+|++|++++      +.+++|
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~Itif   45 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIF   45 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEE
Confidence            3489999999999999999999998      677765

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.22  E-value=0.0072  Score=47.40  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|+.|+.+|..|++.|.+|+++
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli  381 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVL  381 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEE
Confidence            369999999999999999999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.18  E-value=0.0077  Score=47.08  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++|||+|+.|+..|..|++.|.+|+++
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli  209 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVM  209 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEE
Confidence            58999999999999999999999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.18  E-value=0.0076  Score=49.80  Aligned_cols=29  Identities=45%  Similarity=0.692  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+.+|..|++.|.+|+|+
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv  169 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVI  169 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            68999999999999999999999999875

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.17  E-value=0.0091  Score=42.23  Aligned_cols=30  Identities=27%  Similarity=0.434  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|+.|+..|..|++.+.+|+++
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v  170 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLV  170 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEE
Confidence            369999999999999999999999998874

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK14727 putative mercuric reductase; Provisional

Probab=96.16  E-value=0.0086  Score=46.48  Aligned_cols=29  Identities=17%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv  217 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTIL  217 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            68999999999999999999999999985

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.15  E-value=0.0092  Score=43.39  Aligned_cols=29  Identities=41%  Similarity=0.418  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~   33 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLN   33 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEE
Confidence            58999999999999999999999999875

>PRK06116 glutathione reductase; Validated

Probab=96.13  E-value=0.0093  Score=45.65  Aligned_cols=30  Identities=33%  Similarity=0.406  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  196 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLF  196 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999875

>PRK10262 thioredoxin reductase; Provisional

Probab=96.10  E-value=0.0094  Score=43.48  Aligned_cols=30  Identities=40%  Similarity=0.508  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv  175 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLI  175 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEE
Confidence            369999999999999999999999999875

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.0062  Score=47.35  Aligned_cols=30  Identities=30%  Similarity=0.516  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.+|||+|.+||+||...++.|.+|.++
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~G~kV~~l   48 (503)
T KOG4716|consen   19 DYDLIVIGGGSGGLACAKEAADLGAKVACL   48 (503)
T ss_pred             CccEEEEcCCcchhhHHHHHHhcCCcEEEE
Confidence            489999999999999999999999999875

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.09  E-value=0.0097  Score=44.76  Aligned_cols=29  Identities=31%  Similarity=0.459  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|.-|..-|..++..|++|+++
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~   36 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAW   36 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999985

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.07  E-value=0.0096  Score=46.68  Aligned_cols=30  Identities=30%  Similarity=0.518  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+.+|..|+..+.+|+++
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv  380 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVL  380 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            479999999999999999999999999875

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.05  E-value=0.011  Score=46.45  Aligned_cols=30  Identities=23%  Similarity=0.439  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+.-|..+++.|.+|+|+
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTii  202 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVV  202 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            379999999999999999999999999986

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.05  E-value=0.01  Score=43.53  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||+|.-|..-|..+++.|++|+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~   34 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVF   34 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEE
Confidence            48999999999999999999999999985

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.04  E-value=0.011  Score=45.83  Aligned_cols=29  Identities=24%  Similarity=0.478  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli  206 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLV  206 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            68999999999999999999999999875

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.04  E-value=0.0091  Score=46.01  Aligned_cols=29  Identities=24%  Similarity=0.492  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|+..|..|+++|++|+++
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~   32 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGV   32 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEE
Confidence            68999999999999999999999999875

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=96.02  E-value=0.011  Score=45.35  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli  195 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLI  195 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence            68999999999999999999999999875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.00  E-value=0.0096  Score=47.22  Aligned_cols=30  Identities=33%  Similarity=0.444  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+..|..|++.|.+|+++
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli  172 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVI  172 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEE
Confidence            479999999999999999999999999885

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.011  Score=45.07  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=26.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ++++|+|+|..|+++|..|+++|++|++
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~   33 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTV   33 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEE
Confidence            6899999999999999999999999986

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.96  E-value=0.014  Score=43.35  Aligned_cols=29  Identities=41%  Similarity=0.606  Sum_probs=26.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHE-VLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~   89 (89)
                      ++++|||+|..|+.+|..|.+.|.+ |+|+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi  202 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLA  202 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            6999999999999999999999987 8874

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.95  E-value=0.012  Score=45.59  Aligned_cols=29  Identities=28%  Similarity=0.430  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|+|.|.+|+++|..|.++|++|+++
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~   43 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAF   43 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999999874

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.94  E-value=0.013  Score=42.67  Aligned_cols=29  Identities=21%  Similarity=0.473  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~   32 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIV   32 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEE
Confidence            58999999999999999999999999875

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.92  E-value=0.013  Score=44.86  Aligned_cols=29  Identities=31%  Similarity=0.392  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|+|.|.+|+++|..|+++|++|+++
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~   34 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAY   34 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999998864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.91  E-value=0.013  Score=45.87  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|++|++++..|.++|++|+++
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~   41 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVC   41 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEE
Confidence            368999999999999999999999999863

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.91  E-value=0.014  Score=42.20  Aligned_cols=29  Identities=31%  Similarity=0.471  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||+|..|...|..++++|++|+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~   32 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMV   32 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEE
Confidence            47999999999999999999999999875

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.89  E-value=0.012  Score=49.19  Aligned_cols=29  Identities=34%  Similarity=0.530  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+.+|..|++.|.+|+|+
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvV  174 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVI  174 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            68999999999999999999999999875

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.89  E-value=0.017  Score=40.36  Aligned_cols=30  Identities=30%  Similarity=0.486  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|.|-.|..+|..|.+.|++|+++
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~   57 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVA   57 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999999863

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02507 glutathione reductase

Probab=95.84  E-value=0.014  Score=45.75  Aligned_cols=29  Identities=21%  Similarity=0.282  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli  232 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLF  232 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence            69999999999999999999999999985

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=95.83  E-value=0.011  Score=47.07  Aligned_cols=31  Identities=29%  Similarity=0.587  Sum_probs=28.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        59 ~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.+|++|||+|.-||.+|.+|++.|.+|.|+
T Consensus        13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vl   43 (561)
T KOG4254|consen   13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVL   43 (561)
T ss_pred             cccceEEecCCccchhHHHHHHhcCcceEEE
Confidence            3589999999999999999999999999875

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.82  E-value=0.016  Score=44.29  Aligned_cols=30  Identities=23%  Similarity=0.461  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli  187 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTIL  187 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            369999999999999999999999999875

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.76  E-value=0.017  Score=43.92  Aligned_cols=30  Identities=30%  Similarity=0.409  Sum_probs=27.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+++|+|+|.+|+.++..|.+.|.+|+++
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~  196 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTIL  196 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEE
Confidence            468999999999999999999999988764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.75  E-value=0.018  Score=42.68  Aligned_cols=29  Identities=34%  Similarity=0.683  Sum_probs=25.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ++|.|||+|..|...|+.|+.+|+ +|+++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vvlv   31 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLL   31 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEE
Confidence            589999999999999999999987 77654

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PTZ00058 glutathione reductase; Provisional

Probab=95.73  E-value=0.017  Score=46.36  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli  266 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIF  266 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEE
Confidence            379999999999999999999999999985

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.72  E-value=0.015  Score=45.27  Aligned_cols=29  Identities=28%  Similarity=0.229  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|+|.|.+|.++|..|.++|.+|++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~   37 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALT   37 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEE
Confidence            68999999999999999999999999874

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.71  E-value=0.019  Score=41.79  Aligned_cols=29  Identities=41%  Similarity=0.690  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|++.|++|+++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~   30 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLW   30 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            47999999999999999999999999875

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.67  E-value=0.019  Score=42.38  Aligned_cols=29  Identities=38%  Similarity=0.495  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~   33 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLW   33 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            68999999999999999999999999875

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.62  E-value=0.021  Score=41.71  Aligned_cols=29  Identities=41%  Similarity=0.580  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|++.|++|+++
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~   33 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLI   33 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            58999999999999999999999999875

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.62  E-value=0.025  Score=41.59  Aligned_cols=30  Identities=33%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||+|.-|...|..|++.|++|+++
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~   33 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVW   33 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEE
Confidence            368999999999999999999999999875

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.60  E-value=0.022  Score=44.41  Aligned_cols=30  Identities=30%  Similarity=0.484  Sum_probs=27.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|-+|+++|..|.++|++|+++
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~   44 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVA   44 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence            368999999999999999999999988763

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.54  E-value=0.022  Score=43.83  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++|+|||+|..|+.+|..|.+.|. +|+++
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv  303 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIV  303 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence            4799999999999999999999998 78874

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.53  E-value=0.021  Score=44.45  Aligned_cols=30  Identities=33%  Similarity=0.584  Sum_probs=25.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      +++|+|||||.+|+.+|..|.++-  .+|+++
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLV   34 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLV   34 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEE
Confidence            479999999999999999999974  677763

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.53  E-value=0.02  Score=46.83  Aligned_cols=29  Identities=24%  Similarity=0.350  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLI  341 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSF  341 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999985

>PLN02546 glutathione reductase

Probab=95.42  E-value=0.025  Score=45.34  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv  281 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVF  281 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            369999999999999999999999999885

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.38  E-value=0.028  Score=44.84  Aligned_cols=30  Identities=33%  Similarity=0.386  Sum_probs=26.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|++|+.++..+...|.+|+++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~  194 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAF  194 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999877653

>PRK04148 hypothetical protein; Provisional

Probab=95.37  E-value=0.018  Score=38.61  Aligned_cols=28  Identities=29%  Similarity=0.474  Sum_probs=25.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++||.| .|...|..|++.|++|+.+
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaI   45 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVI   45 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEE
Confidence            689999999 9998999999999999853

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.37  E-value=0.031  Score=41.28  Aligned_cols=30  Identities=30%  Similarity=0.359  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|.|.+|..++..|.+.|.+|+++
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~  181 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVG  181 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999988874

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.35  E-value=0.03  Score=43.57  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|+.|+.+|..+...|.+|+++
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~  231 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVT  231 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999988763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.32  E-value=0.031  Score=40.69  Aligned_cols=29  Identities=34%  Similarity=0.479  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|++.|++|+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~   33 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLL   33 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            58999999999999999999999999875

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.31  E-value=0.034  Score=37.28  Aligned_cols=29  Identities=34%  Similarity=0.502  Sum_probs=25.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.+||-|..|...|..|.++|++|++|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~   30 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVY   30 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEE
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEee
Confidence            58999999999999999999999999876

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.31  E-value=0.033  Score=39.08  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ..+|+|+|+|-.|...|..|++.|. +++++
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lv   51 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILV   51 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence            4799999999999999999999999 57653

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.29  E-value=0.021  Score=45.00  Aligned_cols=30  Identities=37%  Similarity=0.499  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|-|.+|+++|.+|.++|++|+++
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~   36 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVS   36 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEE
Confidence            479999999999999999999999999874

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.29  E-value=0.027  Score=44.40  Aligned_cols=29  Identities=31%  Similarity=0.442  Sum_probs=25.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      ++|.|||.|..|+..|..|+++|  ++|+.+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv   32 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV   32 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE
Confidence            58999999999999999999985  667643

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.28  E-value=0.028  Score=46.06  Aligned_cols=30  Identities=33%  Similarity=0.471  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~   89 (89)
                      .++|+|||+|..|+-+|..+.+.|.+ |+++
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv  600 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIV  600 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEe
Confidence            47999999999999999999999997 8874

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.23  E-value=0.04  Score=37.85  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=26.5

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|- +|..+|.+|.++|.+|++.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~   74 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVC   74 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEE
Confidence            48999999996 6999999999999888763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.22  E-value=0.043  Score=37.56  Aligned_cols=30  Identities=30%  Similarity=0.500  Sum_probs=26.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+ |..|...+..|++.|++|+++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~   58 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLV   58 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            379999997 999999999999999988764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.15  E-value=0.044  Score=39.47  Aligned_cols=30  Identities=37%  Similarity=0.570  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||||.+++-=+..|.+.|-+|+|+
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVV   54 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYIL   54 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999999985

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.12  E-value=0.031  Score=43.58  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|+|.|.+|+++|..|.++|++|+++
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~   36 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVA   36 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999998763

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.10  E-value=0.036  Score=35.91  Aligned_cols=28  Identities=39%  Similarity=0.513  Sum_probs=24.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .+|+|+|+|-.|...|..|++.|. ++++
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~l   31 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITL   31 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceee
Confidence            699999999999999999999998 5554

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=95.04  E-value=0.03  Score=43.47  Aligned_cols=30  Identities=37%  Similarity=0.493  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .|+|+|||+|-+|...+..|++.|.+|+++
T Consensus       175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~  204 (443)
T COG2072         175 GKRVLVIGAGASAVDIAPELAEVGASVTLS  204 (443)
T ss_pred             CCeEEEECCCccHHHHHHHHHhcCCeeEEE
Confidence            589999999999999999999999999875

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.02  E-value=0.037  Score=43.53  Aligned_cols=29  Identities=34%  Similarity=0.487  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|..-|..|+++|++|+++
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~   33 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVF   33 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            58999999999999999999999999885

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.01  E-value=0.034  Score=42.80  Aligned_cols=29  Identities=38%  Similarity=0.538  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|+|.|-+|+++|.+|.++|++|++.
T Consensus        10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~   38 (460)
T PRK01390         10 KTVAVFGLGGSGLATARALVAGGAEVIAW   38 (460)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999998763

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.98  E-value=0.045  Score=40.36  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|.|..|...|..|...|.+|+++
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~  180 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVG  180 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998874

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.98  E-value=0.031  Score=43.15  Aligned_cols=30  Identities=33%  Similarity=0.351  Sum_probs=26.9

Q ss_pred             CceEEEECCCHHHHH-HHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMS-TAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~-aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|-+|++ +|..|.++|++|++.
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~   37 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGS   37 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEE
Confidence            368999999999999 599999999999863

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=94.95  E-value=0.041  Score=43.19  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=25.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC---CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH---GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~---G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..+...   |.+|+++
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli  219 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLC  219 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEE
Confidence            6999999999999999776554   8999885

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.87  E-value=0.053  Score=39.84  Aligned_cols=30  Identities=33%  Similarity=0.430  Sum_probs=26.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-+|.++++.|++.|. +|+|+
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~  157 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIF  157 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            4799999999999999999999998 67764

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.85  E-value=0.037  Score=43.12  Aligned_cols=29  Identities=31%  Similarity=0.508  Sum_probs=25.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|.+|.++|..|. +|.+|+|+
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~   34 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVY   34 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHh-CCCEEEEE
Confidence            379999999999999999999 49999874

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=94.84  E-value=0.037  Score=44.18  Aligned_cols=29  Identities=28%  Similarity=0.554  Sum_probs=24.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC----ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH----EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~----~V~v~   89 (89)
                      ++.=|||+|.|+|+||.+|.+.|.    +|+||
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIl   35 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHIL   35 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEE
Confidence            678899999999999999999754    66664

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.79  E-value=0.044  Score=42.46  Aligned_cols=28  Identities=39%  Similarity=0.604  Sum_probs=26.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-CceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-HEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-~~V~v   88 (89)
                      ++|+|||+|-.|..+|..|++.| .+|+|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~i   30 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTI   30 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEE
Confidence            58999999999999999999999 88886

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.77  E-value=0.048  Score=46.26  Aligned_cols=30  Identities=27%  Similarity=0.360  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+-+|..+.+.|.+|+++
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv  476 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIV  476 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            479999999999999999999999998874

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=94.77  E-value=0.05  Score=41.57  Aligned_cols=29  Identities=31%  Similarity=0.564  Sum_probs=24.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHH--------------CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD--------------HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~--------------~G~~V~v~   89 (89)
                      ++++|||+|++|+..|..|++              .+.+|+++
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv  216 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVL  216 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEE
Confidence            489999999999999999886              36788774

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.75  E-value=0.049  Score=43.17  Aligned_cols=29  Identities=45%  Similarity=0.638  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|..-|..+++.|++|+++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~   34 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLY   34 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999985

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.73  E-value=0.06  Score=38.90  Aligned_cols=30  Identities=37%  Similarity=0.500  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|-+|.+.+..|++.|++|+++
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~  146 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIA  146 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Confidence            468999999999999999999999988774

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=94.72  E-value=0.039  Score=43.11  Aligned_cols=30  Identities=20%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+-.|..|++.+.+|+++
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~  233 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIA  233 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEE
Confidence            479999999999999999999999999874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.65  E-value=0.056  Score=42.04  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|+.|...|..|...|.+|+++
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~  224 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVT  224 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEE
Confidence            479999999999999999999999998874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.62  E-value=0.061  Score=39.66  Aligned_cols=30  Identities=27%  Similarity=0.414  Sum_probs=26.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ..+|+|+|.|-.|..+|..|++.|. +++++
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLi   60 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLI   60 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence            3799999999999999999999995 66653

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=94.61  E-value=0.027  Score=43.50  Aligned_cols=31  Identities=23%  Similarity=0.521  Sum_probs=26.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           59 PKLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        59 ~~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .++|.+|||+|.+|++.|..|.-+  +.+|.|+
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vl   79 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVL   79 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEee
Confidence            368999999999999999888877  7788764

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.58  E-value=0.063  Score=39.27  Aligned_cols=29  Identities=38%  Similarity=0.453  Sum_probs=25.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ++|+|||+|..|...|..++.+|+ +|.++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~   32 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLF   32 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            589999999999999999999876 66653

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.56  E-value=0.069  Score=40.09  Aligned_cols=30  Identities=33%  Similarity=0.530  Sum_probs=27.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +++|+|.|+ |..|...+..|.++|++|+.+
T Consensus        21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v   51 (370)
T PLN02695         21 KLRICITGAGGFIASHIARRLKAEGHYIIAS   51 (370)
T ss_pred             CCEEEEECCccHHHHHHHHHHHhCCCEEEEE
Confidence            589999998 999999999999999999863

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=94.56  E-value=0.022  Score=37.61  Aligned_cols=29  Identities=48%  Similarity=0.689  Sum_probs=25.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      +.+|.|||+|..|...+..|.++|+.|.-
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~   38 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVG   38 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            58999999999999999999999998754

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.54  E-value=0.058  Score=41.19  Aligned_cols=29  Identities=41%  Similarity=0.532  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|+|-|.+|++++..|.++|++|+++
T Consensus         7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~   35 (438)
T PRK03806          7 KKVVIIGLGLTGLSCVDFFLARGVTPRVI   35 (438)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCeEEEE
Confidence            68999999999999999999999999763

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.52  E-value=0.067  Score=40.40  Aligned_cols=29  Identities=31%  Similarity=0.504  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|...|..|++.|. ++++
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~l   53 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTI   53 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4799999999999999999999998 6665

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.50  E-value=0.055  Score=44.53  Aligned_cols=29  Identities=28%  Similarity=0.463  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|.-|..-|..++..|++|+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~  342 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMK  342 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999985

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.50  E-value=0.062  Score=42.59  Aligned_cols=29  Identities=45%  Similarity=0.588  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|..-|..|++.|++|+++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~   36 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLY   36 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999985

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.50  E-value=0.081  Score=38.84  Aligned_cols=30  Identities=27%  Similarity=0.387  Sum_probs=26.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~   89 (89)
                      .++++|+|+|-+|.+++..|++.|.+ |+|+
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~  156 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDGAKEITIF  156 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999999999999986 8764

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.45  E-value=0.072  Score=42.62  Aligned_cols=30  Identities=33%  Similarity=0.401  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+++|+|+|++|+.++..+...|.+|+++
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~  193 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAF  193 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999988764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=94.40  E-value=0.038  Score=42.00  Aligned_cols=23  Identities=43%  Similarity=0.703  Sum_probs=21.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG   83 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G   83 (89)
                      .+|+|||+|..||+.|+.+.+.+
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~   26 (342)
T KOG3923|consen    4 PRIAVIGAGVIGLSTALCILELY   26 (342)
T ss_pred             ccEEEEcCCeechhHHHHHHHhh
Confidence            69999999999999998888855

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.38  E-value=0.056  Score=41.46  Aligned_cols=29  Identities=21%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .-|+|+|-|-+|+++|..|.++|++|++.
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~   35 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLARQGIPFAVM   35 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHhCCCeEEEE
Confidence            58999999999999999999999999863

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.34  E-value=0.075  Score=42.34  Aligned_cols=30  Identities=30%  Similarity=0.385  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|-+|.++++.|+++|.+|+++
T Consensus       379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~  408 (529)
T PLN02520        379 GKLFVVIGAGGAGKALAYGAKEKGARVVIA  408 (529)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            468999999999999999999999988764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.33  E-value=0.13  Score=31.06  Aligned_cols=29  Identities=38%  Similarity=0.548  Sum_probs=24.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v   88 (89)
                      .++++|+|.|-+|...+..|.+. +.++.+
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v   52 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVL   52 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            37999999999999999999998 456655

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.32  E-value=0.046  Score=43.38  Aligned_cols=22  Identities=50%  Similarity=0.812  Sum_probs=20.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH   82 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~   82 (89)
                      ++|+|||+|++|+..|..|.+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~   23 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKS   23 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhC
Confidence            6999999999999999999885

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=94.30  E-value=0.071  Score=44.43  Aligned_cols=29  Identities=34%  Similarity=0.463  Sum_probs=26.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+++|||+|..|..+|+.|+++|.++.|
T Consensus        39 ~A~vvViggG~~g~~~~yhlak~g~k~av   67 (856)
T KOG2844|consen   39 TADVVVIGGGSLGCSTAYHLAKRGMKGAV   67 (856)
T ss_pred             cccEEEEcCCchhHHHHHHHHHccccceE
Confidence            37999999999999999999999998654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.29  E-value=0.078  Score=41.47  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|..|...|..|...|.+|+++
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~  241 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVT  241 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999998874

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.29  E-value=0.089  Score=37.88  Aligned_cols=29  Identities=24%  Similarity=0.356  Sum_probs=25.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||.|..|..+|..|++.|. ++++
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~l   61 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTL   61 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4799999999999999999999997 5544

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.28  E-value=0.089  Score=36.30  Aligned_cols=30  Identities=30%  Similarity=0.379  Sum_probs=25.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|-|..|...|..|+..|.+|+|.
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~   52 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVT   52 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEE
Confidence            479999999999999999999999999884

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.24  E-value=0.083  Score=40.77  Aligned_cols=30  Identities=37%  Similarity=0.503  Sum_probs=26.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      ..+++|+|+|..|..++..|.+.| .+|+++
T Consensus       180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~  210 (417)
T TIGR01035       180 GKKALLIGAGEMGELVAKHLLRKGVGKILIA  210 (417)
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCEEEEE
Confidence            479999999999999999999999 577764

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR03452 mycothione_red mycothione reductase

Probab=94.24  E-value=0.043  Score=42.38  Aligned_cols=20  Identities=20%  Similarity=0.333  Sum_probs=17.2

Q ss_pred             CceEEEECCCHHHHHHHHHH
Q 046976           60 KLKVAIIGAGLAGMSTAVEL   79 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L   79 (89)
                      .+|++|||+||+|..+|..+
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~   21 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF   21 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH
Confidence            38999999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.21  E-value=0.094  Score=39.27  Aligned_cols=29  Identities=28%  Similarity=0.424  Sum_probs=25.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|..|...|+.++..|+ ++.+
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~L   35 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVL   35 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            3699999999999999999999997 6444

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.18  E-value=0.1  Score=36.40  Aligned_cols=29  Identities=34%  Similarity=0.478  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||.|-.|...|..|++.|. ++++
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~l   50 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVI   50 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            4799999999999999999999997 6665

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.17  E-value=0.1  Score=38.87  Aligned_cols=29  Identities=34%  Similarity=0.603  Sum_probs=25.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v   88 (89)
                      ..+|+|||+|..|.+.|+.|+..|+  ++.+
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L   36 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVI   36 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence            4799999999999999999999987  4444

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=94.16  E-value=0.092  Score=40.77  Aligned_cols=29  Identities=28%  Similarity=0.402  Sum_probs=25.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .++|+|||+|..|+.+|..+.+.|. +|++
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~  310 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQ  310 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            4799999999999999998888886 5664

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=94.15  E-value=0.074  Score=43.85  Aligned_cols=30  Identities=23%  Similarity=0.433  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      -++|.|||+|.-|..-|..++.+|++|+++
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~  342 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMK  342 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEE
Confidence            368999999999999999999999999975

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.15  E-value=0.099  Score=38.04  Aligned_cols=30  Identities=33%  Similarity=0.557  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      .++++|+|+|-+|.+.+..|++.| .+|+|+
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~  153 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDLGVAEITIV  153 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEE
Confidence            478999999999999999999999 578774

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.13  E-value=0.087  Score=42.76  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++|+|||+|..|+.+|..+.+.|. +|+++
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv  353 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTIL  353 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence            4799999999999999999999997 58764

>PRK07846 mycothione reductase; Reviewed

Probab=94.12  E-value=0.045  Score=42.28  Aligned_cols=19  Identities=21%  Similarity=0.314  Sum_probs=16.9

Q ss_pred             ceEEEECCCHHHHHHHHHH
Q 046976           61 LKVAIIGAGLAGMSTAVEL   79 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L   79 (89)
                      +|++|||+||+|..+|..+
T Consensus         2 yD~vVIG~G~~g~~aa~~~   20 (451)
T PRK07846          2 YDLIIIGTGSGNSILDERF   20 (451)
T ss_pred             CCEEEECCCHHHHHHHHHH
Confidence            7999999999999888754

>PRK08017 oxidoreductase; Provisional

Probab=94.07  E-value=0.1  Score=36.18  Aligned_cols=28  Identities=36%  Similarity=0.443  Sum_probs=25.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      +.++|.|+ |..|...|..|+++|++|++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~   31 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLA   31 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            47999998 99999999999999998875

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=94.05  E-value=0.06  Score=41.81  Aligned_cols=28  Identities=39%  Similarity=0.807  Sum_probs=25.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      -|+|||+|.|||+|+..+..+|-.|+++
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~ll   38 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILL   38 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEE
Confidence            5899999999999999999998777764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.04  E-value=0.1  Score=36.88  Aligned_cols=29  Identities=31%  Similarity=0.387  Sum_probs=25.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|-.|...|..|++.|. ++++
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~l   50 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGL   50 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4799999999999999999999998 5544

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.03  E-value=0.1  Score=37.61  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=25.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|-.|..+|..|++.|. ++++
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~l   53 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTL   53 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEE
Confidence            4799999999999999999999997 4443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.99  E-value=0.1  Score=39.47  Aligned_cols=29  Identities=38%  Similarity=0.513  Sum_probs=26.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|...|.+|++.|. ++++
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~l   53 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTI   53 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            4799999999999999999999998 6665

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.95  E-value=0.14  Score=33.22  Aligned_cols=30  Identities=33%  Similarity=0.503  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      .++++|+|+|..|...+..|.+.| ++|+++
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~   49 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIV   49 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence            369999999999999999999986 677763

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.95  E-value=0.081  Score=40.41  Aligned_cols=28  Identities=32%  Similarity=0.432  Sum_probs=26.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+|+|||-|..|+++|..|.++|++|++
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g   31 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIG   31 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEE
Confidence            5899999999999999999999998875

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.95  E-value=0.12  Score=36.76  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +++|+|||||-.|.-=|..|.+.|-+|+|+
T Consensus        12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vv   41 (210)
T COG1648          12 GKKVLVVGGGSVALRKARLLLKAGADVTVV   41 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            479999999999999999999999999985

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=93.91  E-value=0.1  Score=40.20  Aligned_cols=30  Identities=33%  Similarity=0.442  Sum_probs=26.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ..+|+|+|+|..|..++..|...|. +|+++
T Consensus       182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~  212 (423)
T PRK00045        182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVA  212 (423)
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCCeEEEE
Confidence            4799999999999999999999997 67653

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.88  E-value=0.1  Score=39.00  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|-+.+..|++|++-+.+|+++
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv  172 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLV  172 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEE
Confidence            369999999999999999999999999875

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.88  E-value=0.12  Score=36.58  Aligned_cols=29  Identities=45%  Similarity=0.500  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v   88 (89)
                      ..+|+|||+|-.|...|..|++.|.. +++
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~l   57 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKL   57 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEE
Confidence            47999999999999999999999984 554

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=93.88  E-value=0.14  Score=35.53  Aligned_cols=29  Identities=34%  Similarity=0.566  Sum_probs=25.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|||.|--|.+-|.-|.+.|++|+|
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~V   32 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRDSGVNVIV   32 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHHCC-EEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence            47999999999999999999999999986

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=93.86  E-value=0.1  Score=37.75  Aligned_cols=29  Identities=31%  Similarity=0.590  Sum_probs=26.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|++.|++|+++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~   31 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVY   31 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEE
Confidence            47999999999999999999999998864

>PRK08328 hypothetical protein; Provisional

Probab=93.85  E-value=0.12  Score=36.94  Aligned_cols=29  Identities=41%  Similarity=0.540  Sum_probs=25.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|-.|...|..|++.|. ++++
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~l   56 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILL   56 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4699999999999999999999997 4544

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=93.84  E-value=0.12  Score=37.94  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-++.++++.|++.|. +++|+
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~  155 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASLGVTDITVI  155 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHcCCCeEEEE
Confidence            4789999999999999999999997 57764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.83  E-value=0.12  Score=36.76  Aligned_cols=30  Identities=37%  Similarity=0.648  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc---eEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE---VLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~---V~v~   89 (89)
                      ..+++|+|+|-+|...|..|.+.|.+   ++++
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~iv   57 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVV   57 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEE
Confidence            36999999999999999999999975   6653

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.76  E-value=0.13  Score=38.40  Aligned_cols=29  Identities=34%  Similarity=0.627  Sum_probs=24.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      +.+|+|||+|..|...|+.|+..|+ ++.+
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L   34 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVL   34 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEE
Confidence            4799999999999999999999984 5443

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=93.75  E-value=0.22  Score=34.96  Aligned_cols=29  Identities=31%  Similarity=0.400  Sum_probs=26.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|+|+ |-.|...+..|.++|++|+.
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~   46 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKA   46 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence            479999996 99999999999999999875

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.74  E-value=0.14  Score=38.29  Aligned_cols=25  Identities=36%  Similarity=0.719  Sum_probs=23.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH   84 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~   84 (89)
                      ..+|+|||+|..|.+.|+.|+..|.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~   27 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGL   27 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            3699999999999999999999887

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.66  E-value=0.13  Score=38.08  Aligned_cols=29  Identities=38%  Similarity=0.656  Sum_probs=23.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHH----CC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD----HG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~----~G--~~V~v~   89 (89)
                      ++++|||+|++|+..|..|++    +|  .+|+++
T Consensus       146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li  180 (364)
T TIGR03169       146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI  180 (364)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            589999999999999999985    35  367764

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=93.63  E-value=0.063  Score=41.98  Aligned_cols=30  Identities=40%  Similarity=0.562  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC----CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH----GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~----G~~V~v~   89 (89)
                      ..+|+|||+|-.|.+.|+-|.++    |++|+|+
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVV  119 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVV  119 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEE
Confidence            47999999999999999988774    6788774

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=93.58  E-value=0.12  Score=37.88  Aligned_cols=28  Identities=36%  Similarity=0.644  Sum_probs=26.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +|.|||.|.-|...|..|+++|++|++|
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~   30 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVF   30 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEE
Confidence            7999999999999999999999999875

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=93.58  E-value=0.11  Score=42.99  Aligned_cols=30  Identities=33%  Similarity=0.496  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      -++|.|||+|.-|..-|..++..|++|+++
T Consensus       335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~  364 (737)
T TIGR02441       335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLK  364 (737)
T ss_pred             ccEEEEECCCHhHHHHHHHHHhCCCcEEEe
Confidence            368999999999999999999999999975

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.54  E-value=0.15  Score=37.49  Aligned_cols=29  Identities=31%  Similarity=0.463  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|.+|++
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~  201 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRGFEVYV  201 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            46999999999999999999999988765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02494 adenosylhomocysteinase

Probab=93.53  E-value=0.13  Score=40.87  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|.|+.|...|..+...|.+|+++
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~  283 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAAGARVIVT  283 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998874

>PRK14031 glutamate dehydrogenase; Provisional

Probab=93.49  E-value=0.14  Score=40.28  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|.|-+|..+|..|.+.|.+|+.
T Consensus       228 g~rVaVQGfGNVG~~aA~~L~e~GAkVVa  256 (444)
T PRK14031        228 GKVCLVSGSGNVAQYTAEKVLELGGKVVT  256 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            58999999999999999999999999986

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.47  E-value=0.11  Score=42.76  Aligned_cols=30  Identities=30%  Similarity=0.345  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHH-HCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELL-DHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~-~~G~~V~v~   89 (89)
                      -++|.|||+|.-|..-|..++ ..|++|+++
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~  339 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIK  339 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCCeEEEE
Confidence            368999999999999999888 889999975

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.46  E-value=0.15  Score=38.75  Aligned_cols=30  Identities=37%  Similarity=0.398  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+++|+|+|..|...+..|.+.|++|+++
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vi  260 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLI  260 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            478999999999999999999999999875

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=93.44  E-value=0.15  Score=36.93  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++|+|+|+.+...|..+...|++|+|+
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~  129 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWV  129 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEE
Confidence            69999999999999999999999999984

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=93.44  E-value=0.07  Score=42.18  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=19.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHH
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD   81 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~   81 (89)
                      .+||+|+||||+|++.|..|..
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~s   57 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGS   57 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhcc
Confidence            5899999999999888887763

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=93.41  E-value=0.18  Score=34.36  Aligned_cols=30  Identities=33%  Similarity=0.356  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|...|.+|+.+
T Consensus        36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~   65 (178)
T PF02826_consen   36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGY   65 (178)
T ss_dssp             TSEEEEESTSHHHHHHHHHHHHTT-EEEEE
T ss_pred             CCEEEEEEEcCCcCeEeeeeecCCceeEEe
Confidence            589999999999999999999999999875

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=93.37  E-value=0.016  Score=42.73  Aligned_cols=28  Identities=36%  Similarity=0.514  Sum_probs=23.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v   88 (89)
                      -||+|||+|.+||+||++.+++.  .+|.|
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaI  106 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAI  106 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEE
Confidence            59999999999999999998764  35544

>PRK13984 putative oxidoreductase; Provisional

Probab=93.34  E-value=0.12  Score=41.17  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=22.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH   84 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~   84 (89)
                      .++|+|||+|..|+-+|..|++.|.
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~  442 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQK  442 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccc
Confidence            3799999999999999999998753

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.33  E-value=0.079  Score=41.54  Aligned_cols=30  Identities=33%  Similarity=0.540  Sum_probs=24.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|-+|..||..|+--=-+|+++
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtll  383 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLL  383 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhhhheeeee
Confidence            589999999999999999998433367664

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.32  E-value=0.16  Score=36.89  Aligned_cols=29  Identities=24%  Similarity=0.109  Sum_probs=24.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+++|+|+|+.|+.++..+...|.++++
T Consensus       145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~  173 (308)
T TIGR01202       145 VLPDLIVGHGTLGRLLARLTKAAGGSPPA  173 (308)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEE
Confidence            35899999999999999988889987543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.31  E-value=0.15  Score=38.24  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=22.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      +|+|+|+||.||.++..+...|...+|
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Vi  197 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVI  197 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEE
Confidence            799999999999998888888874443

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=93.30  E-value=0.17  Score=37.33  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-++.++++.|++.|. +++|+
T Consensus       127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~  157 (283)
T PRK14027        127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVA  157 (283)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence            3789999999999999999999997 56553

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=93.29  E-value=0.15  Score=37.74  Aligned_cols=29  Identities=38%  Similarity=0.478  Sum_probs=24.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|..|..++..|.++|. +|++
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v  207 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITI  207 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence            4799999999999999999998774 6665

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK06057 short chain dehydrogenase; Provisional

Probab=93.26  E-value=0.19  Score=35.06  Aligned_cols=30  Identities=27%  Similarity=0.288  Sum_probs=26.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+ |..|...+..|+++|++|+++
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~   37 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGATVVVG   37 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence            378999998 778999999999999998763

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.26  E-value=0.19  Score=35.72  Aligned_cols=29  Identities=38%  Similarity=0.509  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|-|-.|..+|..|.++|.+|+.
T Consensus        23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~   51 (217)
T cd05211          23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLA   51 (217)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            47999999999999999999999986653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=93.23  E-value=0.14  Score=42.16  Aligned_cols=30  Identities=33%  Similarity=0.358  Sum_probs=26.5

Q ss_pred             CceEEEECCCHHHHHHHHHHH-HCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELL-DHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~-~~G~~V~v~   89 (89)
                      -++|.|||+|.-|..-|..++ +.|++|+++
T Consensus       304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~  334 (699)
T TIGR02440       304 IKKVGILGGGLMGGGIASVTATKAGIPVRIK  334 (699)
T ss_pred             ccEEEEECCcHHHHHHHHHHHHHcCCeEEEE
Confidence            368999999999999998888 589999975

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.23  E-value=0.18  Score=37.38  Aligned_cols=30  Identities=20%  Similarity=0.307  Sum_probs=27.1

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|.|- +|...|..|.++|..|+++
T Consensus       159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~  189 (283)
T PRK14192        159 GKHAVVVGRSAILGKPMAMMLLNANATVTIC  189 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCCEEEEE
Confidence            57999999997 9999999999999988874

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.22  E-value=0.17  Score=36.36  Aligned_cols=29  Identities=28%  Similarity=0.235  Sum_probs=26.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|+ |..|...+..|.++|++|++
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~   33 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKA   33 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEE
Confidence            378999995 99999999999999999875

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.20  E-value=0.2  Score=34.90  Aligned_cols=29  Identities=28%  Similarity=0.354  Sum_probs=25.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++++|.|+ |-.|...|..|+++|++|.+
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~   39 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGAEVIL   39 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCCEEEE
Confidence            378999987 77899999999999999876

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=93.14  E-value=0.19  Score=37.70  Aligned_cols=30  Identities=30%  Similarity=0.505  Sum_probs=26.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|..|...+..+.+.|++|.++
T Consensus        12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~   41 (395)
T PRK09288         12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAV   41 (395)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            469999999999998898899999988763

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=93.09  E-value=0.11  Score=39.07  Aligned_cols=29  Identities=28%  Similarity=0.492  Sum_probs=22.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v   88 (89)
                      .++|+|||||.++...+..|.+++.  +|+.
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~  220 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTW  220 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEE
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEE
Confidence            4899999999999999999999875  5554

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=93.08  E-value=0.16  Score=38.64  Aligned_cols=29  Identities=48%  Similarity=0.649  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|+|+|--|-+.|..|++.|++|+++
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw   30 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLW   30 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEE
Confidence            58999999999999999999999999874

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.07  E-value=0.22  Score=34.20  Aligned_cols=29  Identities=24%  Similarity=0.265  Sum_probs=25.7

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|+|+ |..|...|..|+++|++|++
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~   34 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGAKLAL   34 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence            368999998 88999999999999998875

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=93.07  E-value=0.15  Score=38.82  Aligned_cols=30  Identities=30%  Similarity=0.295  Sum_probs=27.3

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIG-AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.||| .|.-|-..|..|.++|++|+++
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~  128 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRIL  128 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEe
Confidence            37899999 8999999999999999999875

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.01  E-value=0.15  Score=37.34  Aligned_cols=29  Identities=38%  Similarity=0.458  Sum_probs=25.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      .+|.|||.|..|.+.|..|.+.|+  +|+++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~   37 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGA   37 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEE
Confidence            689999999999999999999995  66653

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=93.00  E-value=0.17  Score=36.30  Aligned_cols=28  Identities=43%  Similarity=0.732  Sum_probs=26.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      +++.|+|.|-.|...|..+++.||+|+|
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~i   29 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVII   29 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEE
Confidence            5789999999999999999999999986

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=92.99  E-value=0.22  Score=34.33  Aligned_cols=29  Identities=24%  Similarity=0.265  Sum_probs=25.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++++|.|+ |-.|...|..|+++|++|++
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~   34 (248)
T TIGR01832         5 GKVALVTGANTGLGQGIAVGLAEAGADIVG   34 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence            378999997 56899999999999999875

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=92.97  E-value=0.18  Score=40.09  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|.|..|...|..|...|.+|+++
T Consensus       254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~  283 (476)
T PTZ00075        254 GKTVVVCGYGDVGKGCAQALRGFGARVVVT  283 (476)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            589999999999999999999999998874

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.97  E-value=0.12  Score=42.78  Aligned_cols=29  Identities=45%  Similarity=0.408  Sum_probs=26.7

Q ss_pred             ceEEEECCCHHHHHH-HHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMST-AVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~a-A~~L~~~G~~V~v~   89 (89)
                      +++.|+|-|-+|+++ |..|.++|++|++.
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~s   34 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGS   34 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEE
Confidence            479999999999999 99999999999863

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.95  E-value=0.17  Score=38.05  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             CceEEEECCC-HHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAG-LAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G-~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||.| ..|...|..|.++|+.|+++
T Consensus       159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~  189 (301)
T PRK14194        159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVV  189 (301)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence            5899999996 89999999999999999875

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=92.93  E-value=0.19  Score=38.49  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=25.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|..|..+|..|++.|. ++++
T Consensus        41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~i   70 (370)
T PRK05600         41 NARVLVIGAGGLGCPAMQSLASAGVGTITL   70 (370)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4799999999999999999999997 5554

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.92  E-value=0.22  Score=34.20  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=25.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|+|+ |..|...+..|+++|++|+++
T Consensus         6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~   35 (251)
T PRK07231          6 KVAIVTGASSGIGEGIARRFAAEGARVVVT   35 (251)
T ss_pred             cEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            68999987 778999999999999998763

>PRK07060 short chain dehydrogenase; Provisional

Probab=92.87  E-value=0.23  Score=34.01  Aligned_cols=30  Identities=30%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|.|+ |-.|...+..|+++|++|+++
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~   39 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGARVVAA   39 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCCEEEEE
Confidence            368999998 789999999999999998763

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=92.85  E-value=0.2  Score=39.24  Aligned_cols=30  Identities=33%  Similarity=0.423  Sum_probs=25.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++|+|||+|..|+-+|..+.+.|- +|+++
T Consensus       283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv  313 (485)
T TIGR01317       283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQF  313 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            4799999999999999888888875 67764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02712 arogenate dehydrogenase

Probab=92.85  E-value=0.43  Score=39.22  Aligned_cols=30  Identities=47%  Similarity=0.612  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +++|.|||.|..|-..|..|.++|++|+++
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~   81 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAH   81 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence            579999999999999999999999988764

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.84  E-value=0.21  Score=38.27  Aligned_cols=30  Identities=30%  Similarity=0.405  Sum_probs=26.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-------CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-------HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-------~~V~v~   89 (89)
                      +.+|.|||+|.-|.+.|..|+++|       ++|.++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw   47 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMW   47 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEE
Confidence            379999999999999999999998       677763

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=92.82  E-value=0.22  Score=36.53  Aligned_cols=29  Identities=31%  Similarity=0.422  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ++++|+|+|-++.++++.|++.|. +++|+
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~  152 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIV  152 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence            589999999999999999999997 47764

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=92.80  E-value=0.21  Score=37.51  Aligned_cols=30  Identities=33%  Similarity=0.448  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|...|++|..|
T Consensus       146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~  175 (330)
T PRK12480        146 NMTVAIIGTGRIGAATAKIYAGFGATITAY  175 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            478999999999999999999999999864

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=92.79  E-value=0.087  Score=39.68  Aligned_cols=28  Identities=32%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-CceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-HEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-~~V~v   88 (89)
                      +|++.||.||++|+.|..|.+.+ .++..
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f   31 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHGDLKALF   31 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH---EEE
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcCCCCEEE
Confidence            69999999999999999998876 44443

>PLN02240 UDP-glucose 4-epimerase

Probab=92.75  E-value=0.22  Score=36.24  Aligned_cols=29  Identities=31%  Similarity=0.531  Sum_probs=26.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+++
T Consensus         6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~   35 (352)
T PLN02240          6 RTILVTGGAGYIGSHTVLQLLLAGYKVVVI   35 (352)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            68999987 999999999999999998764

>PRK07326 short chain dehydrogenase; Provisional

Probab=92.73  E-value=0.23  Score=33.96  Aligned_cols=29  Identities=28%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.++|+|+ |..|...+.+|+++|++|+++
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~   36 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGYKVAIT   36 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence            68999986 889999999999999998764

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.72  E-value=0.21  Score=37.41  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=27.8

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIG-AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+||| +|..|...|..|.++|+.|+++
T Consensus       158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~  188 (296)
T PRK14188        158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIA  188 (296)
T ss_pred             CCEEEEEcCCcchHHHHHHHHHhCCCEEEEE
Confidence            58999999 8999999999999999999874

>PRK07774 short chain dehydrogenase; Provisional

Probab=92.69  E-value=0.26  Score=33.93  Aligned_cols=29  Identities=28%  Similarity=0.332  Sum_probs=25.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|.|+ |-.|...+..|+++|++|+++
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~~vi~~   36 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGASVVVA   36 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            68999988 889999999999999998763

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.69  E-value=0.21  Score=34.81  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=25.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|..|...|..|++.|. ++++
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~l   50 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTI   50 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEE
Confidence            3799999999999999999999998 4554

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08223 hypothetical protein; Validated

Probab=92.66  E-value=0.2  Score=37.41  Aligned_cols=29  Identities=28%  Similarity=0.316  Sum_probs=25.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|..+|.+|++.|. ++++
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~l   56 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTI   56 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEE
Confidence            4799999999999999999999998 4443

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=92.65  E-value=0.21  Score=38.88  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|||+|..|+.+|..+.+.|. +|+|+
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv  312 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCA  312 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence            4799999999999999999999995 68874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.64  E-value=0.24  Score=36.46  Aligned_cols=29  Identities=34%  Similarity=0.409  Sum_probs=26.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+++
T Consensus         5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~   34 (349)
T TIGR02622         5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGY   34 (349)
T ss_pred             CEEEEECCCChhHHHHHHHHHHCCCEEEEE
Confidence            68999996 999999999999999998753

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.62  E-value=0.23  Score=37.09  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=27.5

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||.|. .|...|..|.++|..|+++
T Consensus       158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~  188 (286)
T PRK14175        158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTIL  188 (286)
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCeEEEE
Confidence            58999999988 9999999999999999874

>PRK10637 cysG siroheme synthase; Provisional

Probab=92.57  E-value=0.24  Score=38.70  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||||.++.-=+..|.+.|.+|+|+
T Consensus        12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~vi   41 (457)
T PRK10637         12 DRDCLLVGGGDVAERKARLLLDAGARLTVN   41 (457)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            489999999999999999999999999885

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.55  E-value=0.23  Score=37.23  Aligned_cols=27  Identities=30%  Similarity=0.379  Sum_probs=24.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+|.|+|+|.-|.+.|..|++.| .|++
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l   34 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQ   34 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEE
Confidence            68999999999999999999998 5544

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.52  E-value=0.24  Score=37.56  Aligned_cols=29  Identities=34%  Similarity=0.475  Sum_probs=25.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|..+|..|++.|. ++++
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~l   57 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGVGHITI   57 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            4799999999999999999999998 4444

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.50  E-value=0.25  Score=36.54  Aligned_cols=29  Identities=28%  Similarity=0.314  Sum_probs=26.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+.+|.++|++|+.+
T Consensus        16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~   45 (348)
T PRK15181         16 KRWLITGVAGFIGSGLLEELLFLNQTVIGL   45 (348)
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence            79999997 999999999999999998753

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=92.49  E-value=0.24  Score=35.61  Aligned_cols=29  Identities=31%  Similarity=0.409  Sum_probs=25.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|.|-.|..+|..|++.|. ++++
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~L   40 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTL   40 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            3699999999999999999999998 5544

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.40  E-value=0.18  Score=37.91  Aligned_cols=29  Identities=41%  Similarity=0.543  Sum_probs=26.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|-.-|..++..||+|+++
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~   32 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLK   32 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEE
Confidence            69999999999999999999988999875

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=92.40  E-value=0.22  Score=39.81  Aligned_cols=29  Identities=34%  Similarity=0.509  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|||+|.+|.-.|..|++...+|++
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~  211 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYL  211 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEE
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEE
Confidence            58999999999999999999998888876

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.39  E-value=0.24  Score=40.05  Aligned_cols=30  Identities=30%  Similarity=0.459  Sum_probs=26.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++|+|||+|..|+-+|..+.+.|. +|+++
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i  498 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCA  498 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEe
Confidence            4799999999999999999999996 67763

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.32  E-value=0.36  Score=35.56  Aligned_cols=29  Identities=28%  Similarity=0.264  Sum_probs=26.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|+ |..|...+.+|.++|++|++
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~   39 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHA   39 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence            479999995 89999999999999999875

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=92.30  E-value=0.29  Score=36.14  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-++.+.++.|++.|. +++|+
T Consensus       124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~  154 (288)
T PRK12749        124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLF  154 (288)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence            3689999999999999999999997 67664

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=92.26  E-value=0.29  Score=36.37  Aligned_cols=30  Identities=30%  Similarity=0.469  Sum_probs=26.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|=++.++++.|++.|. +++|+
T Consensus       126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~  156 (283)
T COG0169         126 GKRVLILGAGGAARAVAFALAEAGAKRITVV  156 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            4789999999999999999999995 68774

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.24  E-value=0.28  Score=34.29  Aligned_cols=29  Identities=31%  Similarity=0.390  Sum_probs=25.4

Q ss_pred             CceEEEECC-C-HHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-G-LAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G-~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+ | -.|...+..|+++|++|++
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~   47 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVI   47 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEE
Confidence            478999997 5 5899999999999999876

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=92.23  E-value=0.29  Score=35.78  Aligned_cols=29  Identities=31%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|+ |..|...+..|.++|++|++
T Consensus         6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~   35 (340)
T PLN02653          6 RKVALITGITGQDGSYLTEFLLSKGYEVHG   35 (340)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            378999997 89999999999999999875

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.13  E-value=0.28  Score=34.17  Aligned_cols=29  Identities=38%  Similarity=0.493  Sum_probs=25.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|...|..|++.|. ++++
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~l   48 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITI   48 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            3799999999999999999999998 4554

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.12  E-value=0.051  Score=44.28  Aligned_cols=30  Identities=30%  Similarity=0.553  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||||.+|.-+|+..+-+|.+|-++
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLV   96 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALV   96 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEE
Confidence            489999999999999999999999998753

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.11  E-value=0.26  Score=37.45  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=25.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|-.|..+|..|++.|. ++++
T Consensus       135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~l  164 (376)
T PRK08762        135 EARVLLIGAGGLGSPAALYLAAAGVGTLGI  164 (376)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            4799999999999999999999998 5554

>PRK06841 short chain dehydrogenase; Provisional

Probab=92.06  E-value=0.34  Score=33.53  Aligned_cols=29  Identities=21%  Similarity=0.198  Sum_probs=25.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+ |..|...|..|+++|++|++
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~   44 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGARVAL   44 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            368999986 77899999999999999875

>PLN02778 3,5-epimerase/4-reductase

Probab=92.05  E-value=0.46  Score=34.64  Aligned_cols=29  Identities=24%  Similarity=0.261  Sum_probs=26.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|+ |..|...+..|.++|++|++
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~   38 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHY   38 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            479999986 99999999999999999864

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=92.03  E-value=0.2  Score=32.14  Aligned_cols=29  Identities=24%  Similarity=0.256  Sum_probs=25.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|+|.|+...-+...+.+.|++++++
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v   31 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGIETVAV   31 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCcceec
Confidence            69999999999999999999999987753

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.02  E-value=0.37  Score=34.44  Aligned_cols=29  Identities=28%  Similarity=0.521  Sum_probs=25.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+..+|.+ |++
T Consensus       121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~  150 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVA  150 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            46899999999999999999999986 654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.00  E-value=0.27  Score=39.06  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.+++|+|.|+.|...|..|.++|++|+++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvI  446 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVI  446 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEE
Confidence            368999999999999999999999999874

>PRK07454 short chain dehydrogenase; Provisional

Probab=91.99  E-value=0.35  Score=33.27  Aligned_cols=29  Identities=28%  Similarity=0.422  Sum_probs=25.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.++|.|+ |-.|...+..|+++|++|+++
T Consensus         7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~   36 (241)
T PRK07454          7 PRALITGASSGIGKATALAFAKAGWDLALV   36 (241)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence            67888886 778999999999999998763

>PLN02214 cinnamoyl-CoA reductase

Probab=91.98  E-value=0.32  Score=35.95  Aligned_cols=29  Identities=28%  Similarity=0.249  Sum_probs=26.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|+ |..|...+..|.++|++|+.
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~   39 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGYTVKG   39 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence            368999998 99999999999999999875

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=91.98  E-value=0.32  Score=35.45  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=22.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG   83 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G   83 (89)
                      ..+|+|||+|-.|...+..|++.|
T Consensus        11 ~~~V~vvG~GGlGs~v~~~Lar~G   34 (244)
T TIGR03736        11 PVSVVLVGAGGTGSQVIAGLARLH   34 (244)
T ss_pred             CCeEEEEcCChHHHHHHHHHHHcc
Confidence            479999999999999999999975

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.95  E-value=0.38  Score=33.32  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=25.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+ |-.|...+..|+++|++|++
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~   36 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGAAVAI   36 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence            368999988 78899999999999999875

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=91.95  E-value=0.17  Score=41.52  Aligned_cols=30  Identities=30%  Similarity=0.510  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      .+|.+|||||-||...|..|++. ..+|+++
T Consensus        57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLL   87 (623)
T KOG1238|consen   57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLL   87 (623)
T ss_pred             CCCEEEECCCchhHHHHHhhccCCCceEEEE
Confidence            58999999999999999999986 4677764

>PRK12828 short chain dehydrogenase; Provisional

Probab=91.91  E-value=0.34  Score=32.82  Aligned_cols=30  Identities=43%  Similarity=0.430  Sum_probs=25.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+ |..|...+..|+++|++|+++
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~   37 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGARVALI   37 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCCeEEEE
Confidence            368999987 778999999999999998753

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.91  E-value=0.16  Score=39.86  Aligned_cols=27  Identities=26%  Similarity=0.582  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVL   87 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~   87 (89)
                      .+|.|||-|..||..|..++++|++|+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~Vi   36 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVI   36 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceE
Confidence            799999999999999999999999986

>PRK06849 hypothetical protein; Provisional

Probab=91.90  E-value=0.3  Score=36.81  Aligned_cols=30  Identities=37%  Similarity=0.437  Sum_probs=26.9

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|++. .|+..|..|.+.|++|+++
T Consensus         4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~   34 (389)
T PRK06849          4 KKTVLITGARAPAALELARLFHNAGHTVILA   34 (389)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence            47999999997 7999999999999999874

>PLN02583 cinnamoyl-CoA reductase

Probab=91.88  E-value=0.35  Score=34.95  Aligned_cols=29  Identities=28%  Similarity=0.379  Sum_probs=25.7

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.|+|.|+ |..|...+..|.++|++|++
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~   35 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHA   35 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            368999986 88999999999999999875

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=91.85  E-value=0.23  Score=39.01  Aligned_cols=30  Identities=37%  Similarity=0.512  Sum_probs=23.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|+|.|..-...|..|++.|++|+.+
T Consensus         4 ~yDviI~GTGl~esila~als~~GkkVLhi   33 (438)
T PF00996_consen    4 EYDVIILGTGLTESILAAALSRSGKKVLHI   33 (438)
T ss_dssp             BESEEEE--SHHHHHHHHHHHHTT--EEEE
T ss_pred             cceEEEECCCcHHHHHHHHHHhcCCEEEec
Confidence            489999999999988888999999999864

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PLN02256 arogenate dehydrogenase

Probab=91.81  E-value=0.36  Score=35.93  Aligned_cols=30  Identities=40%  Similarity=0.583  Sum_probs=26.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|-..|..|.+.|++|+++
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~   65 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLAT   65 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999888764

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.79  E-value=0.15  Score=39.18  Aligned_cols=30  Identities=27%  Similarity=0.533  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|.+|..+|..+.-.|-+|+|+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtil  197 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTIL  197 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEE
Confidence            469999999999999999999999999985

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=91.78  E-value=0.22  Score=39.30  Aligned_cols=29  Identities=17%  Similarity=0.445  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||.|.-|...|..|+++|++|++|
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~   30 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVY   30 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEE
Confidence            47999999999999999999999999886

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=91.78  E-value=0.22  Score=38.65  Aligned_cols=28  Identities=39%  Similarity=0.609  Sum_probs=25.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||-|..|+..|..|++ |++|++|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~   34 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGF   34 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEE
Confidence            689999999999999999887 6999875

>PRK05875 short chain dehydrogenase; Provisional

Probab=91.71  E-value=0.39  Score=33.77  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=26.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|.|+ |..|...+..|+++|++|+++
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~   37 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIV   37 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence            378999997 789999999999999998753

>PRK05993 short chain dehydrogenase; Provisional

Probab=91.67  E-value=0.36  Score=34.27  Aligned_cols=28  Identities=25%  Similarity=0.277  Sum_probs=25.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      +.++|.|+ |-.|...|..|+++|++|++
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~~Vi~   33 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGWRVFA   33 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            57899988 77899999999999999876

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=91.67  E-value=0.22  Score=38.12  Aligned_cols=29  Identities=34%  Similarity=0.589  Sum_probs=26.0

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIG-AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..|+|.| +|..|..+++.|.++||.|+++
T Consensus         3 ~~VLVtGgaGyiGsht~l~L~~~gy~v~~v   32 (343)
T KOG1371|consen    3 KHVLVTGGAGYIGSHTVLALLKRGYGVVIV   32 (343)
T ss_pred             cEEEEecCCcceehHHHHHHHhCCCcEEEE
Confidence            5788885 5999999999999999999875

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=91.66  E-value=0.3  Score=37.28  Aligned_cols=30  Identities=40%  Similarity=0.486  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||-|..|...|..|...|++|+++
T Consensus        16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~   45 (335)
T PRK13403         16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVG   45 (335)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence            479999999999999999999999999874

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=91.65  E-value=0.36  Score=36.70  Aligned_cols=30  Identities=30%  Similarity=0.536  Sum_probs=26.7

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+ |..|...+..|.++|++|+++
T Consensus        60 ~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l   90 (390)
T PLN02657         60 DVTVLVVGATGYIGKFVVRELVRRGYNVVAV   90 (390)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            468999987 999999999999999998764

>PRK12939 short chain dehydrogenase; Provisional

Probab=91.63  E-value=0.42  Score=32.78  Aligned_cols=30  Identities=23%  Similarity=0.228  Sum_probs=25.7

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+ |..|...|..|.++|++|+++
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~   37 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGATVAFN   37 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence            368999987 788999999999999998753

>PRK07577 short chain dehydrogenase; Provisional

Probab=91.62  E-value=0.4  Score=32.70  Aligned_cols=29  Identities=31%  Similarity=0.472  Sum_probs=25.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.++|.|+ |..|...|..|+++|++|+++
T Consensus         4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~   33 (234)
T PRK07577          4 RTVLVTGATKGIGLALSLRLANLGHQVIGI   33 (234)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEE
Confidence            57899987 778999999999999998763

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=91.61  E-value=0.32  Score=37.28  Aligned_cols=29  Identities=31%  Similarity=0.392  Sum_probs=25.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|..+|..|++.|. ++++
T Consensus        42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~l   71 (392)
T PRK07878         42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGI   71 (392)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            4799999999999999999999998 5544

>PRK06949 short chain dehydrogenase; Provisional

Probab=91.60  E-value=0.42  Score=33.04  Aligned_cols=29  Identities=28%  Similarity=0.253  Sum_probs=25.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+ |-.|...+..|+++|++|++
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~   38 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAGAKVVL   38 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence            378999987 77899999999999998875

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=91.60  E-value=0.34  Score=38.11  Aligned_cols=30  Identities=40%  Similarity=0.544  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|-+|.+.+..|++.|++|+++
T Consensus       332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~  361 (477)
T PRK09310        332 NQHVAIVGAGGAAKAIATTLARAGAELLIF  361 (477)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Confidence            468999999999999999999999988763

>PLN02206 UDP-glucuronate decarboxylase

Probab=91.60  E-value=0.34  Score=37.64  Aligned_cols=30  Identities=27%  Similarity=0.602  Sum_probs=27.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|+ |..|...+..|.++|++|+++
T Consensus       119 ~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~l  149 (442)
T PLN02206        119 GLRVVVTGGAGFVGSHLVDRLMARGDSVIVV  149 (442)
T ss_pred             CCEEEEECcccHHHHHHHHHHHHCcCEEEEE
Confidence            479999996 999999999999999998763

>PRK09072 short chain dehydrogenase; Provisional

Probab=91.58  E-value=0.41  Score=33.51  Aligned_cols=29  Identities=34%  Similarity=0.485  Sum_probs=25.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.++|.|+ |..|...+..|+++|++|+++
T Consensus         6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~   35 (263)
T PRK09072          6 KRVLLTGASGGIGQALAEALAAAGARLLLV   35 (263)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            67899986 778999999999999998763

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=91.56  E-value=0.35  Score=33.10  Aligned_cols=29  Identities=31%  Similarity=0.407  Sum_probs=25.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|.|+ |..|...+..|.++|++|+++
T Consensus         7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~   36 (251)
T PRK12826          7 RVALVTGAARGIGRAIAVRLAADGAEVIVV   36 (251)
T ss_pred             CEEEEcCCCCcHHHHHHHHHHHCCCEEEEE
Confidence            68999985 788999999999999998763

>PRK12742 oxidoreductase; Provisional

Probab=91.53  E-value=0.42  Score=32.65  Aligned_cols=29  Identities=21%  Similarity=0.323  Sum_probs=25.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+ |..|...|..|+++|++|++
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~   35 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRF   35 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            368999986 77899999999999998865

>PRK12829 short chain dehydrogenase; Provisional

Probab=91.52  E-value=0.4  Score=33.24  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=25.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+ |..|...+..|+++|++|+++
T Consensus        11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~   41 (264)
T PRK12829         11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVC   41 (264)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence            378999987 667999999999999998763

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.51  E-value=0.37  Score=34.45  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=25.1

Q ss_pred             CceEEEECCC---HHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAG---LAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G---~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++   -.|.+.|..|+++|++|++
T Consensus         7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~   38 (271)
T PRK06505          7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAF   38 (271)
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEE
Confidence            3678888987   4799999999999999876

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=91.44  E-value=0.34  Score=41.23  Aligned_cols=29  Identities=17%  Similarity=0.270  Sum_probs=25.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v   88 (89)
                      .++|+|||+|+.|+..|..|++.|.+ |+|
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~v  346 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAI  346 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence            47999999999999999999999964 554

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=91.42  E-value=0.44  Score=32.36  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=25.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|.|+ |..|...+..|+++|++|+++
T Consensus         6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~   35 (246)
T PRK05653          6 KTALVTGASRGIGRAIALRLAADGAKVVIY   35 (246)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            68999986 789999999999999998653

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=91.41  E-value=0.33  Score=41.56  Aligned_cols=29  Identities=28%  Similarity=0.231  Sum_probs=25.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v   88 (89)
                      .++|+|||+|..|+-+|..+.+.|.+ |++
T Consensus       571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vti  600 (1006)
T PRK12775        571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRC  600 (1006)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence            47999999999999999999999985 554

>PRK12827 short chain dehydrogenase; Provisional

Probab=91.41  E-value=0.46  Score=32.46  Aligned_cols=28  Identities=36%  Similarity=0.539  Sum_probs=24.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ++++|+|+ |..|...|..|+++|++|++
T Consensus         7 ~~ilItGasg~iG~~la~~l~~~g~~v~~   35 (249)
T PRK12827          7 RRVLITGGSGGLGRAIAVRLAADGADVIV   35 (249)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence            68999986 66899999999999999876

>PLN02572 UDP-sulfoquinovose synthase

Probab=91.38  E-value=0.63  Score=36.02  Aligned_cols=30  Identities=43%  Similarity=0.680  Sum_probs=26.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|| |-.|...+..|+++|++|+++
T Consensus        47 ~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~   77 (442)
T PLN02572         47 KKKVMVIGGDGYCGWATALHLSKRGYEVAIV   77 (442)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence            478999987 999999999999999999863

>PRK05717 oxidoreductase; Validated

Probab=91.38  E-value=0.55  Score=32.68  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=25.7

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+ |-.|...|..|+++|++|+++
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~   40 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLA   40 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence            368999987 678999999999999998763

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=91.37  E-value=0.29  Score=37.29  Aligned_cols=29  Identities=45%  Similarity=0.631  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|||.|.-|.+-|+-|++.|.+|+|
T Consensus        18 gK~iaIIGYGsQG~ahalNLRDSGlnVii   46 (338)
T COG0059          18 GKKVAIIGYGSQGHAQALNLRDSGLNVII   46 (338)
T ss_pred             CCeEEEEecChHHHHHHhhhhhcCCcEEE
Confidence            47999999999999999999999999876

>PRK07890 short chain dehydrogenase; Provisional

Probab=91.36  E-value=0.41  Score=33.12  Aligned_cols=29  Identities=28%  Similarity=0.291  Sum_probs=25.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|.|+ |..|...|..|+++|++|+++
T Consensus         6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~   35 (258)
T PRK07890          6 KVVVVSGVGPGLGRTLAVRAARAGADVVLA   35 (258)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence            68999987 567999999999999998763

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.31  E-value=0.27  Score=36.64  Aligned_cols=30  Identities=30%  Similarity=0.395  Sum_probs=27.8

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||. |..|...|..|.++|+.|+++
T Consensus       158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~  188 (284)
T PRK14179        158 GKHAVVIGRSNIVGKPMAQLLLDKNATVTLT  188 (284)
T ss_pred             CCEEEEECCCCcCcHHHHHHHHHCCCEEEEE
Confidence            589999999 999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	1e-07
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	1e-07
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	2e-07
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	3e-07
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	3e-07
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	4e-07
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	4e-07
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	5e-07
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	5e-07
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	5e-07
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	5e-07
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	7e-07
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	9e-07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	1e-06
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	1e-06
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	1e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	2e-06
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-06
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	3e-06
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	3e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	4e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	6e-06
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	7e-06
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	7e-06
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	7e-06
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	9e-06
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	1e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-05
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	2e-05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	2e-05
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	2e-05
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	2e-05
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	2e-05
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	2e-05
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	3e-05
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	3e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	3e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	5e-04
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	4e-05
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	4e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	4e-05
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	5e-05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	5e-05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	5e-05
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	6e-05
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	7e-05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	7e-05
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	7e-05
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	7e-05
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	7e-05
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	1e-04
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	1e-04
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	1e-04
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	1e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	1e-04
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	1e-04
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	1e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	1e-04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	1e-04
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	2e-04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	2e-04
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	2e-04
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	2e-04
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	2e-04
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	2e-04
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	3e-04
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	3e-04
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	3e-04
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	3e-04
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	3e-04
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	3e-04
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	3e-04
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	4e-04
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	4e-04
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	5e-04
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	5e-04
3dme_A	369	Conserved exported protein; structural genomics, P	6e-04
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	6e-04
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	8e-04
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	7e-04
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	8e-04
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	8e-04
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	9e-04

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V ++G G AG+ +A EL   G++V ++
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVL 40

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 62 KVAIIGAGLAGMSTAVELLDHG-HEVLLI 89
          ++AIIGAG AG++  + L   G H+  ++
Sbjct: 8  RIAIIGAGPAGLAAGMYLEQAGFHDYTIL 36

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          ++  ++GAGL G+     L  +GHE++++
Sbjct: 1  MRAVVVGAGLGGLLAGAFLARNGHEIIVL 29

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 58 GPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
              ++A++G  ++G++ A+ L D G +V
Sbjct: 3  PTTDRIAVVGGSISGLTAALMLRDAGVDV 31

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V I+GAG+AG+S A  L   GH+V ++
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQVTVL 62

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 44.6 bits (106), Expect = 4e-07
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEV 86
            +K  +IGAG+ G+S AV L   G + 
Sbjct: 22 GHMKAIVIGAGIGGLSAAVALKQSGIDC 49

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 44.7 bits (105), Expect = 4e-07
 Identities = 9/31 (29%), Positives = 21/31 (67%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           + +V ++G+G+ G+S+A+ L   G+ V ++
Sbjct: 5  SQKRVVVLGSGVIGLSSALILARKGYSVHIL 35

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 58 GPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
          G   +  + G G AG++ A+ L  +G +V
Sbjct: 9  GKTRRAEVAGGGFAGLTAAIALKQNGWDV 37

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 44.7 bits (105), Expect = 5e-07
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
            K+ I+GAG +G     +L + GH+V +I
Sbjct: 3  SKKILIVGAGFSGAVIGRQLAEKGHQVHII 32

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 44.7 bits (105), Expect = 5e-07
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
             I+G+GL G   A EL     +VL+I
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVI 30

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           VAI+GAG +G++ A  L   G  V +I
Sbjct: 7  DVAIVGAGPSGLAAATALRKAGLSVAVI 34

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 43.7 bits (102), Expect = 9e-07
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 51 PEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
                   K ++ I+GAG AG+   + L  H  +V + 
Sbjct: 13 GLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVY 51

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 53 PEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           E          I+GAG AG   A  L   G  VL++
Sbjct: 22 NEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIV 58

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
            K+ IIGAG  G+  AV L + G++   +
Sbjct: 9  TPKIVIIGAGPTGLGAAVRLTELGYKNWHL 38

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 58 GPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          GP  ++ I+GAG+AG+     L   GH+V ++
Sbjct: 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTIL 73

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 63  VAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V IIG+G AG++ AV   D G +V+L+
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILL 155

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 42.6 bits (99), Expect = 3e-06
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI 89
           + V +IGAG  G+  A  L    G   +++
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIV 40

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          ++V +IGAG+ G+STA+ + +  H VL  
Sbjct: 1  MRVVVIGAGVIGLSTALCIHERYHSVLQP 29

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 45 PKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
            GL              VAIIG G  G++ A  L  +G +V
Sbjct: 11 SSGLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDV 52

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 63  VAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V ++GAG AG + ++     G  V+L+
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILV 150

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            ++G G +G+  A +L + G +VLL+
Sbjct: 4  AIVVGGGFSGLKAARDLTNAGKKVLLL 30

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V ++G G++GM+ A  L D G  V+++
Sbjct: 6  DVVVVGGGISGMAAAKLLHDSGLNVVVL 33

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 41.2 bits (97), Expect = 7e-06
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          +K  +IGAGL G+ +A  L   GHEV + 
Sbjct: 1  MKTVVIGAGLGGLLSAARLSKAGHEVEVF 29

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V +IGAG AG   A  +   G +V ++
Sbjct: 8  VLVIGAGPAGTVAASLVNKSGFKVKIV 34

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 41.1 bits (96), Expect = 9e-06
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          + +IG G  G + A  +   GH VLL+
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGHRVLLL 36

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          VAIIG G AG    + L   GH+V + 
Sbjct: 26 VAIIGGGPAGSVAGLTLHKLGHDVTIY 52

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 63  VAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V ++G+G AG S A+   D G +V+LI
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILI 155

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 40.7 bits (94), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 47  GLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           G++            KV IIG+G++G++ A +L   G +V L+
Sbjct: 265 GIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLL 307

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 49  FLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           + PE    +    +V ++GAG +G+  A  L   G++V+L 
Sbjct: 380 WHPERIRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLA 420

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 47  GLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           G++            KV IIG+G++G++ A +L   G +V L+
Sbjct: 94  GIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLL 136

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          + IIG+G+AG+S  V L   G +V LI
Sbjct: 2  IYIIGSGIAGLSAGVALRRAGKKVTLI 28

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 62 KVAIIGAGLAGMSTAVELLDHG-HEVLLI 89
          +V ++GAG++G+S A  L + G  ++L++
Sbjct: 6  RVIVVGAGMSGISAAKRLSEAGITDLLIL 34

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 51 PEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
             E       +VA+IGAG++G++ A +L  HG  V + 
Sbjct: 4  SAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVF 42

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           K KV IIGAG+AG+  A  L  +G +  L+
Sbjct: 7  AKKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHG-HEV 86
          + + I GAG+ G+S A+ L   G  +V
Sbjct: 5  IDILIAGAGIGGLSCALALHQAGIGKV 31

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 49  FLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           + PE       K  V I+GAG +G   A  L++ G+ V L 
Sbjct: 378 WHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLT 418

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 60  KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           K  +A++GAG AG++ A+     GH+V L 
Sbjct: 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLF 402

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 62  KVAIIGAGLAGMSTAVELLDHGHEV 86
           KVAIIG G  G  TA+ L   G   
Sbjct: 496 KVAIIGCGGIGFDTAMYLSQPGEST 520

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 39.1 bits (92), Expect = 4e-05
 Identities = 10/50 (20%), Positives = 17/50 (34%)

Query: 40 MSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          M+   P+ +              V ++GAG+AG+         G  V   
Sbjct: 1  MNGQHPRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAF 50

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 40 MSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          M  +      +P           VA++G G++G++ A  L   G + +L+
Sbjct: 1  MDHHHHHHHHMPRTTGMN-----VAVVGGGISGLAVAHHLRSRGTDAVLL 45

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 60 KLKVAIIGAGLAGMSTAVELL-DHGHEVLLI 89
          +  + ++G+G  G++ A  +       VL++
Sbjct: 7  RFDLFVVGSGFFGLTIAERVATQLDKRVLVL 37

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          P L   +IGAG+ G+  A  +   G +VL I
Sbjct: 8  PALDAVVIGAGVTGIYQAFLINQAGMKVLGI 38

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V + G G+AG++ ++E    G +VL++
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVL 70

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 39.0 bits (89), Expect = 5e-05
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          +V I+GAG+ G   A  L       L +
Sbjct: 3  QVLIVGAGMTGSLCAALLRRQTSGPLYL 30

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 38.4 bits (90), Expect = 6e-05
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V I G G+ G   A  L   GH V+++
Sbjct: 9  VLINGCGIGGAMLAYLLGRQGHRVVVV 35

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++GAGL G+STA+ L   G  VL++
Sbjct: 8  VLVVGAGLGGLSTAMFLARQGVRVLVV 34

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 53 PEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           E Y      V ++G G  G++TA ++ + GH VL++
Sbjct: 2  TESYD-----VVVVGGGPVGLATAWQVAERGHRVLVL 33

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          + IIG+G  G +        G  VL+ 
Sbjct: 5  LIIIGSGSVGAAAGYYATRAGLNVLMT 31

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 38.7 bits (88), Expect = 7e-05
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 42 VNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVL 87
          V+ P     P      G   ++AI+G G  G++   EL      + 
Sbjct: 39 VSYPVAAAAPLGRLPAGNY-RIAIVGGGAGGIAALYELGRLAATLP 83

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 38.4 bits (90), Expect = 7e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 53 PEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
            H+     K+ I+GAG AG S A   L    ++ +I
Sbjct: 2  HHHHHHKSTKILILGAGPAGFSAAKAALGKCDDITMI 38

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 46  KGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
           +G   P           V +IGAG AG++ A EL   G+EV
Sbjct: 109 QGWVKPRTPSRELGL-SVGVIGAGPAGLAAAEELRAKGYEV 148

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Length = 155

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 56 YRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           +     + I G G  G   A      GH V+++
Sbjct: 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVV 48

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V I+G G  GM+ A++L       L++
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVV 55

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 40 MSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          M+           PE        V ++GAG +G+     L + G  V +I
Sbjct: 1  MAGQTTVDSRRQPPEEVD-----VLVVGAGFSGLYALYRLRELGRSVHVI 45

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V IIG G AG S A +L   G ++LL+
Sbjct: 9  VLIIGGGFAGSSAAYQLSRRGLKILLV 35

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 62 KVAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
           V I+GAG  GM  A E+   L  GHEV LI
Sbjct: 6  HVVILGAGTGGMPAAYEMKEALGSGHEVTLI 36

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 53 PEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
          P           +IGAG+AG ST   L  HG  V+L
Sbjct: 7  PIEAD-----YLVIGAGIAGASTGYWLSAHGRVVVL 37

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 5/37 (13%)

Query: 53 PEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
            HY        +IG G+ G + A  L        L 
Sbjct: 15 KRHYE-----AVVIGGGIIGSAIAYYLAKENKNTALF 46

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} Length = 218

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          KV IIG        A  +L   + V++I
Sbjct: 2  KVIIIGGETTAYYLARSMLSRKYGVVII 29

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K  V IIGAG AGM  A+E    G  VL+I
Sbjct: 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVI 56

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++GAG AGM  A EL   G EV+++
Sbjct: 14 VIVVGAGPAGMMLAGELRLAGVEVVVL 40

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++GAG AG+  A EL   G +V+++
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVL 41

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V IIG+G AG+S A+ L D    V+++
Sbjct: 11 VLIIGSGAAGLSLALRLADQHQ-VIVL 36

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 36.7 bits (86), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
            +  IIGAG AG+  A +L   G  V + 
Sbjct: 4  YSENIIIGAGAAGLFCAAQLAKLGKSVTVF 33

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Length = 588

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            +IGAG AGM  A+++   G    L+
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALL 36

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 62  KVAIIGAGLAGMSTAVELLDHGH 84
           K+A++GAG A +S A  L   G+
Sbjct: 189 KIALLGAGPASISCASFLARLGY 211

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            +IG GLAG+  AV     G   +++
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVL 34

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++G G  G+  A EL   G   L++
Sbjct: 52 VVVVGGGPVGLMLAGELRAGGVGALVL 78

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHE 85
             +AI+G+G +    A  LL     
Sbjct: 3  PYYIAIVGSGPSAFFAAASLLKAADT 28

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 62 KVAIIGAGLAGMSTAVELLDHG--HEV 86
          K+AIIGAG +G+ TA  LL      +V
Sbjct: 8  KIAIIGAGPSGLVTAKALLAEKAFDQV 34

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
              A++G G  G + A  L   G  VL  
Sbjct: 4  SKTYAVLGLGNGGHAFAAYLALKGQSVLAW 33

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Length = 621

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            ++GAG AG+  A  L + G     +
Sbjct: 21 AVVVGAGGAGLRAAFGLSEAGFNTACV 47

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 57 RGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          +     V +IG G  G++   +L   G + LL+
Sbjct: 36 KDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLL 68

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 53 PEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
           E+     +K+A++G G  G + A  L D GHEV +
Sbjct: 12 HENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTI 47

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++GAG  GM+   +L   G + LL+
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLV 32

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 35.6 bits (83), Expect = 6e-04
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            +IGAG+ G++ A  L   GHEVL+ 
Sbjct: 7  CIVIGAGVVGLAIARALAAGGHEVLVA 33

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 35.9 bits (83), Expect = 6e-04
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 13  TGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLP--------------EPEHYRG 58
                + +      + +  + +T  +D    A      P              + +++  
Sbjct: 107 ENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFNK 166

Query: 59  PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
              +  +IG   +G   A +L  +G ++ L 
Sbjct: 167 --GQYVVIGGNESGFDAAYQLAKNGSDIALY 195

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 54 EHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          +H++     VAIIGAG AG+  A+ L D G   ++I
Sbjct: 3  QHHK-----VAIIGAGAAGIGMAITLKDFGITDVII 33

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 62 KVAIIGAGLAGMSTAVEL--LDHGHEVLLI 89
          ++ I+G G+ G++ A           + L+
Sbjct: 6  RLVIVGGGITGLAAAYYAERAFPDLNITLL 35

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 62 KVAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
          KV ++G     ++ A  L   +    +V +I
Sbjct: 3  KVLVLGGRFGALTAAYTLKRLVGSKADVKVI 33

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.65
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.5
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.2
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.1
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.06
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.84
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.81
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.78
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.77
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.71
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.69
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.69
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.65
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.64
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.61
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.6
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.56
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.55
3dme_A	369	Conserved exported protein; structural genomics, P	98.52
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.5
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.49
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.48
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.46
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.46
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.45
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.45
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.45
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.45
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.44
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.42
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.42
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.42
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.42
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.41
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.41
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.4
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.4
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.4
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.4
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.39
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.39
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.39
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.38
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.38
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.37
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.37
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.37
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.36
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.36
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.35
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.35
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.35
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.35
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.34
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.34
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.34
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.34
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.33
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.33
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.33
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.33
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.33
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.33
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.33
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.32
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.32
3atr_A	453	Conserved archaeal protein; saturating double bond	98.32
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.32
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.32
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.32
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.31
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.31
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.3
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.3
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.29
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.29
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.29
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.29
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.28
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.28
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.28
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.27
4dna_A	463	Probable glutathione reductase; structural genomic	98.27
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.27
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.26
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.26
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.26
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.25
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.25
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.25
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.24
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.24
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.23
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.22
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.22
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.22
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.21
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.21
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.2
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.2
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.2
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.2
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.19
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.19
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.19
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.19
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.18
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.18
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.18
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.17
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.17
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.17
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.17
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.17
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.17
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.16
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.16
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.16
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.16
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.16
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.15
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.15
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.15
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.14
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.14
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.13
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.13
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.13
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.13
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.13
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.12
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.12
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.12
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.11
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.1
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.1
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.1
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.1
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.09
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.09
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.09
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.08
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.08
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.08
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.08
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.07
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.07
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.07
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.06
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.06
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.05
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.05
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.05
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.04
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.04
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.04
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.03
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.03
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.02
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.02
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.02
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.02
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.99
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.98
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.98
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.97
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.96
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.94
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.93
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.93
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.92
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.92
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.92
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.91
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.91
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.91
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.9
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.9
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.9
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.9
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.89
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.88
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.87
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.86
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.84
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.84
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.82
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.81
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.8
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.77
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.76
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.76
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.65
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.52
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.5
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.45
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.35
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.22
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.2
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.2
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.19
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.19
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.15
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.14
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.12
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.11
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.08
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.06
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.0
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.99
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.97
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.97
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.93
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.93
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.93
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.91
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.9
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.85
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.84
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.83
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.78
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.77
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.76
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.72
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.72
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.65
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.64
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.61
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.59
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.59
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.57
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.57
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.55
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.52
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.52
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.5
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.49
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.49
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.49
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.48
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.48
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.46
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.45
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	96.43
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.4
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.4
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.39
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.37
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.37
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.36
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.35
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.35
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.35
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.35
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.35
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.33
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.33
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.33
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.32
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.31
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.31
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.3
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.3
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.28
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.28
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.28
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.26
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.25
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.23
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.23
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.22
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.22
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.21
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.21
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.21
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.2
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.19
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.19
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.19
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.19
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	96.17
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.16
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.16
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.14
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.09
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.09
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.05
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.04
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.04
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.04
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.01
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.0
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.99
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.95
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.95
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.94
3r9u_A	315	Thioredoxin reductase; structural genomics, center	95.91
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	95.91
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	95.91
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	95.89
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.88
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.88
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.86
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.86
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.86
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	95.85
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.83
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.83
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	95.82
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.81
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.81
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.8
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.79
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.79
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.79
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.76
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.76
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.75
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.74
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.72
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.72
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.71
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.7
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.68
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.68
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.64
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.6
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.57
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.56
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.52
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.51
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.49
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.49
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.48
4dna_A	463	Probable glutathione reductase; structural genomic	95.47
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.46
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.45
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.42
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.42
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.39
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.39
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.39
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.37
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.36
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.35
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.35
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.34
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.34
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	95.33
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.3
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.3
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.27
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.22
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.2
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.19
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.17
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.09
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.08
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.08
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.08
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.06
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.06
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.03
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.02
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.01
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.01
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.01
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.99
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	94.97
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.95
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.93
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.93
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.92
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.92
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	94.88
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	94.88
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.86
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.85
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.83
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	94.8
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.8
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.77
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.76
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.75
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.72
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.71
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.67
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	94.63
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	94.62
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.59
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.57
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.57
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.56
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	94.54
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.51
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.49
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.49
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.49
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	94.47
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.47
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	94.46
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	94.46
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	94.46
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	94.44
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	94.44
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.42
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.42
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.41
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	94.4
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.39
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	94.35
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	94.34
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.33
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.33
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.32
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.31
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.3
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.27
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.25
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.24
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.23
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.22
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.21
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.2
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	94.16
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.13
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.11
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	94.11
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.06
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	94.03
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.03
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	94.01
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.01
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.01
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	93.98
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.97
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.97
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	93.94
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	93.91
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.9
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.89
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.88
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.86
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.83
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.82
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.81
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	93.81
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.74
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.73
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.72
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	93.72
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.69
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	93.69
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.67
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	93.67
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	93.67
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	93.65
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.61
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	93.58
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	93.57
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.55
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.55
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.54
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	93.52
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	93.51
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.5
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	93.5
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.44
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	93.42
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	93.36
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	93.35
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	93.35
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.32
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.28
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.26
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.26
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	93.2
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	93.19
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.18
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.18
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.18
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	93.17
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	93.16
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.12
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.12
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	93.11
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	93.1
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.1
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.1
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	93.09
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	93.07
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	93.07
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	93.04
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	93.01
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	93.01
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	92.99
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	92.98
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	92.98

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.65  E-value=4.9e-17  Score=123.54  Aligned_cols=81  Identities=22%  Similarity=0.243  Sum_probs=61.1

Q ss_pred             ccCCCCCCCcccccCCC--cchhhccccc----------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHH
Q 046976            6 LLPATSVTGVKWSRVQV--KGPRFHVRAS----------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGM   73 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl   73 (89)
                      .+.+|||+++|||+||+  +||..|+|+.          +++++.|..+.  .++.++.+... ...++|+|||+||+|+
T Consensus        59 ~~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~--~~~~~~~~~~~-~~~~~V~IIGgGpAGl  135 (456)
T 2vdc_G           59 SQATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWD--QGWVKPRTPSR-ELGLSVGVIGAGPAGL  135 (456)
T ss_dssp             HHHHCSCHHHHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHH--HTCCCCCCSCS-SCCCCEEEECCSHHHH
T ss_pred             HHhhCCCCccccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHH--cCCCCCCCCcC-CCCCEEEEECCCHHHH
Confidence            45579999999999999  9999999874          34555554443  23333222111 1247999999999999


Q ss_pred             HHHHHHHHCCCceEEc
Q 046976           74 STAVELLDHGHEVLLI   89 (89)
Q Consensus        74 ~aA~~L~~~G~~V~v~   89 (89)
                      ++|+.|+++|++|+||
T Consensus       136 ~aA~~L~~~G~~V~v~  151 (456)
T 2vdc_G          136 AAAEELRAKGYEVHVY  151 (456)
T ss_dssp             HHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHCCCeEEEE
Confidence            9999999999999986

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.50  E-value=7e-15  Score=120.53  Aligned_cols=84  Identities=17%  Similarity=0.073  Sum_probs=60.1

Q ss_pred             ccCCCCCCCcccccCCC--cchhhccccc----------hhhhhhhccccCCCC-CCCCC-CC---CCCCCCceEEEECC
Q 046976            6 LLPATSVTGVKWSRVQV--KGPRFHVRAS----------LDTNVSDMSVNAPKG-LFLPE-PE---HYRGPKLKVAIIGA   68 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~~----------l~~~~~~~~~~~~~~-~~~~~-~~---~~~~~~~~v~IvG~   68 (89)
                      .+.+|||+.+|||+||+  +||..|+|+.          +++|+.|..+..... ..++. +.   .+....+||+|||+
T Consensus       116 ~~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGg  195 (1025)
T 1gte_A          116 IFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGA  195 (1025)
T ss_dssp             HHHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECC
T ss_pred             HHhcCChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECc
Confidence            34579999999999997  9999999852          567777764321111 01111 00   01112479999999


Q ss_pred             CHHHHHHHHHHHHCCC-ceEEc
Q 046976           69 GLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        69 G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ||+|+++|.+|+++|+ +|+||
T Consensus       196 GpAGl~aA~~L~~~G~~~Vtv~  217 (1025)
T 1gte_A          196 GPASISCASFLARLGYSDITIF  217 (1025)
T ss_dssp             SHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cHHHHHHHHHHHhcCCCcEEEE
Confidence            9999999999999999 79986

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.20  E-value=1.4e-12  Score=93.65  Aligned_cols=81  Identities=22%  Similarity=0.193  Sum_probs=54.6

Q ss_pred             ccccCCCCCCCcccccCCCcchhhccccchhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHHHHHHH--
Q 046976            4 SLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLD--   81 (89)
Q Consensus         4 ~~~~~~~~~~~~~~~iC~~~C~~~c~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA~~L~~--   81 (89)
                      ..++.++|++..+..+|++.++..+....+..........  ..++......   ..+||+|||+||+||+||++|++  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~DV~IIGaGPAGlsAA~~la~~r   88 (326)
T 3fpz_A           14 QLHLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMT--SRYFKDLDKF---AVSDVIIVGAGSSGLSAAYVIAKNR   88 (326)
T ss_dssp             --CGGGSCCCCTTTTTCCSTTCTTCCCCCCCHHHHHHHHH--HHHHHHHHHT---TEESEEEECCSHHHHHHHHHHHHHC
T ss_pred             HHHhhcCCchhhhhhhcccccccccccCCccHHHHHHHHH--HHHHhhhhhc---cCCCEEEECCCHHHHHHHHHHHHhC
Confidence            4578889999999999999988877664443322221111  0011111111   13799999999999999999985  


Q ss_pred             CCCceEEc
Q 046976           82 HGHEVLLI   89 (89)
Q Consensus        82 ~G~~V~v~   89 (89)
                      +|++|+||
T Consensus        89 ~G~~V~vi   96 (326)
T 3fpz_A           89 PDLKVCII   96 (326)
T ss_dssp             TTSCEEEE
T ss_pred             CCCeEEEE
Confidence            59999986

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.10  E-value=8e-11  Score=76.59  Aligned_cols=29  Identities=48%  Similarity=0.795  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+||||||+||++|+.|+++|++|+||
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~   31 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLF   31 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            68999999999999999999999999996

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.06  E-value=3.3e-11  Score=91.92  Aligned_cols=82  Identities=17%  Similarity=0.085  Sum_probs=53.4

Q ss_pred             cCCCCCCCcccccCCC---cchhhccccchhhhhhhccccC---CCCC-----C-------CCCCCCCCCCCceEEEECC
Q 046976            7 LPATSVTGVKWSRVQV---KGPRFHVRASLDTNVSDMSVNA---PKGL-----F-------LPEPEHYRGPKLKVAIIGA   68 (89)
Q Consensus         7 ~~~~~~~~~~~~iC~~---~C~~~c~r~~l~~~~~~~~~~~---~~~~-----~-------~~~~~~~~~~~~~v~IvG~   68 (89)
                      +-+|+++++||++||+   .|+..|.+. .+..+.......   ....     .       .+.........+||+|||+
T Consensus        22 ~~~~~~~~~~~rvc~~~~~l~~~~g~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGg  100 (497)
T 2bry_A           22 FETFVQAQLCQDVLSSFQGLCRALGVES-GGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGA  100 (497)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECC
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhCCCC-CCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECc
Confidence            3456778999999998   699999883 332221111100   0000     0       0010111112479999999


Q ss_pred             CHHHHHHHHHHHHCCCceEEc
Q 046976           69 GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        69 G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      |++|+++|..|+++|++|+|+
T Consensus       101 G~aGl~aA~~La~~G~~V~li  121 (497)
T 2bry_A          101 GPCGLRAAVELALLGARVVLV  121 (497)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEE
T ss_pred             cHHHHHHHHHHHHCCCeEEEE
Confidence            999999999999999999986

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.84  E-value=2.3e-09  Score=76.40  Aligned_cols=30  Identities=27%  Similarity=0.429  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+||||||+|+++|+.|+++|++|+||
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~   33 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMI   33 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            389999999999999999999999999986

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.81  E-value=3.4e-09  Score=84.20  Aligned_cols=30  Identities=40%  Similarity=0.512  Sum_probs=28.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++|+++|..|+++|++|+||
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtli  418 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLT  418 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            589999999999999999999999999986

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.78  E-value=8.1e-09  Score=80.99  Aligned_cols=30  Identities=40%  Similarity=0.689  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+.+|..|+++|++|+||
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~li  402 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLF  402 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999986

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.77  E-value=6.3e-09  Score=73.52  Aligned_cols=30  Identities=30%  Similarity=0.501  Sum_probs=28.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|++||++|+++|++|+||
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~li   35 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGRARKQIALF   35 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcCEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            589999999999999999999999999986

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.71  E-value=9.9e-09  Score=71.84  Aligned_cols=30  Identities=27%  Similarity=0.306  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||||++||.+|+++|++|+||
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~li   33 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMY   33 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            389999999999999999999999999986

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.69  E-value=1.4e-08  Score=71.55  Aligned_cols=30  Identities=40%  Similarity=0.581  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||||++||.+|+++|++|+||
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~li   35 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMI   35 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            389999999999999999999999999986

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.69  E-value=1e-08  Score=76.50  Aligned_cols=29  Identities=38%  Similarity=0.662  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|++||+||++|+++|++|+||
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~Vl   30 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLL   30 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEE
Confidence            58999999999999999999999999996

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.65  E-value=2.3e-08  Score=71.84  Aligned_cols=29  Identities=41%  Similarity=0.652  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+||+||++|..|+++|++|+||
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~   30 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIY   30 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEE
Confidence            69999999999999999999999999986

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.64  E-value=2.6e-08  Score=72.82  Aligned_cols=30  Identities=37%  Similarity=0.630  Sum_probs=28.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+||
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~   52 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVY   52 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            589999999999999999999999999986

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.61  E-value=7.3e-08  Score=74.53  Aligned_cols=30  Identities=43%  Similarity=0.675  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~  155 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILL  155 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            469999999999999999999999999986

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.60  E-value=3.1e-08  Score=69.52  Aligned_cols=30  Identities=33%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+||
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vi   51 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILY   51 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            489999999999999999999999999986

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.56  E-value=5.8e-08  Score=76.44  Aligned_cols=30  Identities=33%  Similarity=0.536  Sum_probs=28.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+||
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~li  420 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLA  420 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            589999999999999999999999999986

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.55  E-value=4.1e-08  Score=73.01  Aligned_cols=30  Identities=30%  Similarity=0.570  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      ..||+|||||++||+||++|++ .|++|+||
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~Vl   40 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIV   40 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEE
Confidence            3799999999999999999998 59999986

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.52  E-value=9.1e-08  Score=67.72  Aligned_cols=30  Identities=40%  Similarity=0.707  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vl   33 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVA   33 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            379999999999999999999999999986

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.50  E-value=1.9e-07  Score=73.35  Aligned_cols=57  Identities=23%  Similarity=0.345  Sum_probs=39.2

Q ss_pred             chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           32 SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++++.+.++.. .+.+++.........++|+|||+|++|+++|+.|+++|++|+||
T Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~  136 (662)
T 2z3y_A           80 RVHSYLERHGLIN-FGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLL  136 (662)
T ss_dssp             HHHHHHHHTTSSS-CSSCBCSSCCCSSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHh-cCCccccCCCcccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            3566676665442 22333211111123589999999999999999999999999986

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.46  E-value=1.3e-07  Score=69.14  Aligned_cols=29  Identities=31%  Similarity=0.721  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vl   30 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLL   30 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence            69999999999999999999999999986

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.46  E-value=1.3e-07  Score=68.90  Aligned_cols=29  Identities=34%  Similarity=0.524  Sum_probs=28.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~   34 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIV   34 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            79999999999999999999999999986

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.45  E-value=1.5e-07  Score=67.49  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~ll   46 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENKNTALF   46 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence            479999999999999999999999999986

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.45  E-value=1.5e-07  Score=68.23  Aligned_cols=29  Identities=34%  Similarity=0.748  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|++|+++|+.|+++|++|+|+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vl   33 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVL   33 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999986

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.45  E-value=1.7e-07  Score=64.56  Aligned_cols=29  Identities=38%  Similarity=0.625  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|++|+||
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li   31 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLV   31 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            69999999999999999999999999986

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.45  E-value=1.7e-07  Score=65.17  Aligned_cols=30  Identities=30%  Similarity=0.336  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+||
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li   44 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVI   44 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.44  E-value=3.3e-07  Score=74.67  Aligned_cols=76  Identities=17%  Similarity=0.224  Sum_probs=48.9

Q ss_pred             CCCCCCcccccCCCcchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHHHHH
Q 046976            9 ATSVTGVKWSRVQVKGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVEL   79 (89)
Q Consensus         9 ~~~~~~~~~~iC~~~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA~~L   79 (89)
                      ++|...+++    +.|...|.|.         .+++|+.+..+.. ...+.+.........++|+|||+|++||++|++|
T Consensus       223 ~~P~~a~~~----~~~~~~~~r~~~~~p~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~aGl~~A~~l  297 (852)
T 2xag_A          223 DNPKIQLTF----EATLQQLEAPYNSDTVLVHRVHSYLERHGLIN-FGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQL  297 (852)
T ss_dssp             TCTTBCCCH----HHHHHHCCTTTTSCHHHHHHHHHHHHHTTSSS-CSSCBCSSCCCSSCCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCHHHhhH----HHHHHhCCCcccCCcHHHHHHHHHHHHHHHHh-cCcccccCCcccCCCCeEEEECCCHHHHHHHHHH
Confidence            455555443    3355556663         3567777766532 1222221111112357999999999999999999


Q ss_pred             HHCCCceEEc
Q 046976           80 LDHGHEVLLI   89 (89)
Q Consensus        80 ~~~G~~V~v~   89 (89)
                      +++|++|+||
T Consensus       298 ~~~g~~v~v~  307 (852)
T 2xag_A          298 QSFGMDVTLL  307 (852)
T ss_dssp             HHTTCEEEEE
T ss_pred             HHCCCcEEEE
Confidence            9999999986

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.42  E-value=2.9e-07  Score=71.70  Aligned_cols=30  Identities=20%  Similarity=0.422  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~Vl  136 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIV  136 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            479999999999999999999999999986

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.42  E-value=1.4e-07  Score=70.15  Aligned_cols=29  Identities=31%  Similarity=0.541  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+||+|+++|+.|+++|++|+||
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~vi   51 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVY   51 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEE
Confidence            69999999999999999999999999986

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.42  E-value=2.3e-07  Score=67.77  Aligned_cols=30  Identities=27%  Similarity=0.546  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++|+++|+.|+++|++|+||
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~   34 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVY   34 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            379999999999999999999999999986

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.42  E-value=2.3e-07  Score=67.85  Aligned_cols=30  Identities=37%  Similarity=0.674  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      .+||+|||+|++||+||++|+++| ++|+||
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~   36 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTIL   36 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEE
Confidence            479999999999999999999999 899986

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.41  E-value=2.4e-07  Score=64.81  Aligned_cols=29  Identities=31%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|++|+|+
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li   36 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKII   36 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            79999999999999999999999999986

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.41  E-value=2e-07  Score=66.69  Aligned_cols=29  Identities=28%  Similarity=0.434  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vl   31 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMT   31 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            69999999999999999999999999986

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.40  E-value=2.1e-07  Score=64.63  Aligned_cols=29  Identities=38%  Similarity=0.525  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+||+|||+|++|+++|..|+++|++|+|
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~l   32 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVV   32 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEE
Confidence            37999999999999999999999999998

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.40  E-value=2.7e-07  Score=67.42  Aligned_cols=30  Identities=37%  Similarity=0.520  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++|+++|..|+++|++|+||
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~   55 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVY   55 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            479999999999999999999999999986

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.40  E-value=2.7e-07  Score=67.82  Aligned_cols=30  Identities=37%  Similarity=0.522  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|+ +|+|+
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vl   36 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVL   36 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence            3799999999999999999999999 99986

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.40  E-value=2.7e-07  Score=66.23  Aligned_cols=29  Identities=34%  Similarity=0.681  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vi   32 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLV   32 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            79999999999999999999999999986

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.39  E-value=1.9e-07  Score=69.03  Aligned_cols=29  Identities=24%  Similarity=0.550  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      +||+|||+|++||++|++|+++|+  +|+||
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vl   33 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLV   33 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEE
Confidence            699999999999999999999999  99986

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.39  E-value=2.8e-07  Score=68.69  Aligned_cols=30  Identities=33%  Similarity=0.589  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++||++|+.|+++|++|+||
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~   40 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVL   40 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            479999999999999999999999999986

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.39  E-value=1.9e-07  Score=67.68  Aligned_cols=29  Identities=34%  Similarity=0.515  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+||
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~   31 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVIL   31 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            69999999999999999999999999986

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.38  E-value=3.2e-07  Score=66.52  Aligned_cols=30  Identities=30%  Similarity=0.596  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+||
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~vi   40 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLH   40 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999986

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.38  E-value=3.4e-07  Score=65.76  Aligned_cols=30  Identities=30%  Similarity=0.625  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vl   35 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHIL   35 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            379999999999999999999999999986

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.37  E-value=3.1e-07  Score=66.78  Aligned_cols=29  Identities=34%  Similarity=0.564  Sum_probs=28.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+||
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~vi   35 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVV   35 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence            79999999999999999999999999986

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.37  E-value=4e-07  Score=62.56  Aligned_cols=29  Identities=41%  Similarity=0.591  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+.+|..|+++|.+|+|+
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~li   32 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLL   32 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            79999999999999999999999999985

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.37  E-value=3.5e-07  Score=64.43  Aligned_cols=30  Identities=40%  Similarity=0.624  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+||
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li   45 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAIL   45 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence            379999999999999999999999999986

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.36  E-value=4e-07  Score=66.72  Aligned_cols=29  Identities=38%  Similarity=0.659  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHE-VLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~   89 (89)
                      ++|+|||+|++|+++|..|+++|++ |+||
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~   34 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLL   34 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEE
Confidence            7999999999999999999999999 9986

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.36  E-value=3.6e-07  Score=65.71  Aligned_cols=29  Identities=38%  Similarity=0.707  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~ll   34 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVI   34 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999986

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.35  E-value=1.6e-07  Score=68.88  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC------CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG------HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G------~~V~v~   89 (89)
                      +||+|||+|++||++|++|+++|      ++|+||
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vl   40 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLV   40 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEE
Confidence            79999999999999999999999      999986

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.35  E-value=3.2e-07  Score=69.39  Aligned_cols=29  Identities=45%  Similarity=0.772  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      +||+|||+|++||+||+.|+++| ++|+||
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~Vl   38 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVL   38 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence            79999999999999999999999 999986

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.35  E-value=4e-07  Score=69.31  Aligned_cols=30  Identities=37%  Similarity=0.532  Sum_probs=28.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+||+|+++|+.|+++|++|+||
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vl   41 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVL   41 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            489999999999999999999999999986

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.35  E-value=3.9e-07  Score=63.69  Aligned_cols=29  Identities=31%  Similarity=0.444  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|++|+|+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li   30 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLM   30 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            69999999999999999999999999875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.34  E-value=4.1e-07  Score=63.94  Aligned_cols=29  Identities=28%  Similarity=0.533  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|++|+|+
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vi   32 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVIL   32 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            69999999999999999999999999986

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.34  E-value=4.2e-07  Score=64.15  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+||
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li   34 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFV   34 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            379999999999999999999999999986

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.34  E-value=4.3e-07  Score=64.11  Aligned_cols=30  Identities=30%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+||
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li   37 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLIL   37 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            379999999999999999999999999985

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.34  E-value=3.4e-07  Score=64.12  Aligned_cols=29  Identities=34%  Similarity=0.452  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|++|+||
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li   34 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLI   34 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999885

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.33  E-value=4.3e-07  Score=66.91  Aligned_cols=29  Identities=41%  Similarity=0.615  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++||+||++|+++|++|+||
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~   34 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVI   34 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999986

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.33  E-value=3.8e-07  Score=68.84  Aligned_cols=29  Identities=34%  Similarity=0.676  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++||+||++|+++|++|+||
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vl   33 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGLNVVVL   33 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            69999999999999999999999999986

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.33  E-value=4.9e-07  Score=64.74  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+||
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li   43 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRII   43 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            379999999999999999999999999986

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.33  E-value=4.3e-07  Score=68.08  Aligned_cols=30  Identities=53%  Similarity=0.720  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~ll   56 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVI   56 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.33  E-value=4.3e-07  Score=64.60  Aligned_cols=30  Identities=27%  Similarity=0.327  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+||
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li   43 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVF   43 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            479999999999999999999999999885

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.33  E-value=4.3e-07  Score=68.05  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++||++|..|+++|++|+|+
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vl   40 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHI   40 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999986

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.33  E-value=4.4e-07  Score=64.01  Aligned_cols=29  Identities=24%  Similarity=0.363  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|++|+||
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~li   37 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLF   37 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999985

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.32  E-value=4.8e-07  Score=68.92  Aligned_cols=30  Identities=43%  Similarity=0.548  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+||+|+++|+.|+++|++|+||
T Consensus        11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vl   40 (500)
T 2qa1_A           11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVL   40 (500)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            479999999999999999999999999986

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.32  E-value=3.8e-07  Score=65.05  Aligned_cols=29  Identities=34%  Similarity=0.464  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+ +|++|+|+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vl   37 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVL   37 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEE
Confidence            479999999999999999999 69999986

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.32  E-value=2.9e-07  Score=68.56  Aligned_cols=29  Identities=45%  Similarity=0.714  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vl   35 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLV   35 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            79999999999999999999999999986

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.32  E-value=4.8e-07  Score=68.13  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~li   55 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIA   55 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEE
Confidence            479999999999999999999999999986

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.32  E-value=3.8e-07  Score=67.56  Aligned_cols=30  Identities=30%  Similarity=0.711  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++||++|+.|+++|++|+||
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~   45 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLL   45 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999986

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.32  E-value=5e-07  Score=67.47  Aligned_cols=29  Identities=31%  Similarity=0.621  Sum_probs=28.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++||+||+.|+++|++|+||
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~   68 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLL   68 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            79999999999999999999999999986

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.31  E-value=5.5e-07  Score=62.94  Aligned_cols=29  Identities=34%  Similarity=0.547  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|+ +|+||
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~li   31 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLF   31 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEE
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEE
Confidence            689999999999999999999999 99986

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.31  E-value=3.3e-07  Score=65.49  Aligned_cols=29  Identities=28%  Similarity=0.294  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHH---CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD---HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~---~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|++   .|++|+||
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~   33 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVW   33 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEE
Confidence            589999999999999999999   99999986

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.30  E-value=6.3e-07  Score=70.01  Aligned_cols=30  Identities=43%  Similarity=0.651  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||||++|+++|+.|+++|++|+|+
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~Li   52 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIY   52 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEE
Confidence            479999999999999999999999999986

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.30  E-value=7.3e-07  Score=66.63  Aligned_cols=30  Identities=33%  Similarity=0.647  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++||++|+.|.++|++|+||
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~Vl   73 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTIL   73 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999986

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.29  E-value=7.4e-07  Score=58.31  Aligned_cols=29  Identities=34%  Similarity=0.612  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|++|+.+|..|++.|.+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~li   30 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVL   30 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            68999999999999999999999999985

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.29  E-value=7.1e-07  Score=69.87  Aligned_cols=30  Identities=40%  Similarity=0.578  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vl  301 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLY  301 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            479999999999999999999999999986

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.29  E-value=7.3e-07  Score=70.09  Aligned_cols=30  Identities=37%  Similarity=0.447  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vl  293 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLY  293 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999986

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.29  E-value=5.3e-07  Score=68.42  Aligned_cols=29  Identities=34%  Similarity=0.584  Sum_probs=28.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+||
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~li   36 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLL   36 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEE
Confidence            79999999999999999999999999986

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.28  E-value=5.7e-07  Score=68.60  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|++.|++|+|+
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~li   72 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIV   72 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            489999999999999999999999999986

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.28  E-value=5.6e-07  Score=68.30  Aligned_cols=30  Identities=43%  Similarity=0.747  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+|++|+++|+.|+++|++|+||
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~vi   34 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVV   34 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999986

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.28  E-value=7.2e-07  Score=63.56  Aligned_cols=29  Identities=52%  Similarity=0.823  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      +||+|||+|++|+++|..|++.|+ +|+||
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~li   34 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIIL   34 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEE
Confidence            799999999999999999999999 99986

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.27  E-value=6.3e-07  Score=66.94  Aligned_cols=30  Identities=40%  Similarity=0.665  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++||++|+.|+++|++|+||
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~   42 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVF   42 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.27  E-value=6.3e-07  Score=67.02  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+|+
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~li   34 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIA   34 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEE
Confidence            379999999999999999999999999986

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.27  E-value=7e-07  Score=67.23  Aligned_cols=30  Identities=23%  Similarity=0.473  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+|+
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~li   54 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVV   54 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999986

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.26  E-value=6.2e-07  Score=67.08  Aligned_cols=30  Identities=37%  Similarity=0.560  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+|+
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~li   32 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALI   32 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEE
Confidence            489999999999999999999999999986

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.26  E-value=7.9e-07  Score=66.43  Aligned_cols=30  Identities=33%  Similarity=0.647  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~ll   55 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLL   55 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999986

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.26  E-value=7.2e-07  Score=63.04  Aligned_cols=29  Identities=38%  Similarity=0.614  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      +||+|||+|++|+.+|+.|+++ |.+|+|+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~vi   69 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAII   69 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEE
Confidence            7999999999999999999997 9999985

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.25  E-value=7.9e-07  Score=66.11  Aligned_cols=29  Identities=38%  Similarity=0.517  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vl   33 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVF   33 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEE
Confidence            69999999999999999999999999986

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.25  E-value=1.2e-06  Score=64.70  Aligned_cols=29  Identities=34%  Similarity=0.526  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      +||+|||+|++|+.+|+.|+++  |++|+||
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~   96 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCII   96 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEE
Confidence            4999999999999999999998  9999986

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.25  E-value=6.7e-07  Score=64.48  Aligned_cols=30  Identities=33%  Similarity=0.547  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G-~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|++ +| ++|+|+
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vl   52 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVL   52 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEE
Confidence            4799999999999999999999 99 999986

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.24  E-value=9e-07  Score=66.51  Aligned_cols=30  Identities=30%  Similarity=0.500  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+|+
T Consensus         9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~li   38 (483)
T 3dgh_A            9 DYDLIVIGGGSAGLACAKEAVLNGARVACL   38 (483)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence            489999999999999999999999999985

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.24  E-value=8.7e-07  Score=67.30  Aligned_cols=30  Identities=30%  Similarity=0.636  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vl   70 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAGADVLVL   70 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.23  E-value=8.6e-07  Score=68.79  Aligned_cols=30  Identities=30%  Similarity=0.473  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+||
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~Vl   78 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVL   78 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            479999999999999999999999999986

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.22  E-value=1e-06  Score=67.68  Aligned_cols=30  Identities=30%  Similarity=0.505  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+||+|+++|..|+++|++|+||
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vl   55 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVV   55 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999986

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.22  E-value=1.2e-06  Score=65.43  Aligned_cols=30  Identities=20%  Similarity=0.416  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|++.|++|+|+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~li   31 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACV   31 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999986

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.22  E-value=1.1e-06  Score=65.91  Aligned_cols=30  Identities=20%  Similarity=0.431  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+|+
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~li   49 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVV   49 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            479999999999999999999999999986

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.21  E-value=1e-06  Score=67.68  Aligned_cols=30  Identities=40%  Similarity=0.715  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vl  155 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILI  155 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999986

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.21  E-value=9.6e-07  Score=65.27  Aligned_cols=30  Identities=20%  Similarity=0.567  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      .+||+|||+|++||++|+.|+++ |++|+||
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~   37 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVL   37 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEE
Confidence            37999999999999999999999 9999986

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.20  E-value=8.6e-07  Score=65.74  Aligned_cols=29  Identities=21%  Similarity=0.389  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      +||+|||+|++||++|++|+++|  ++|+||
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~   35 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLL   35 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEE
Confidence            79999999999999999999999  999986

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.20  E-value=1.2e-06  Score=65.24  Aligned_cols=30  Identities=47%  Similarity=0.594  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      .++|+|||+|++|+++|..|++.|+  +|+||
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~   37 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLF   37 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEE
Confidence            3799999999999999999999999  99986

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.20  E-value=1.3e-06  Score=65.55  Aligned_cols=29  Identities=38%  Similarity=0.486  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|++|+|+
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~li   33 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMA   33 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            79999999999999999999999999986

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.20  E-value=1.3e-06  Score=67.28  Aligned_cols=30  Identities=20%  Similarity=0.457  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|..|+++|++|+||
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~li  136 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVL  136 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999986

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.19  E-value=1.5e-06  Score=64.92  Aligned_cols=30  Identities=40%  Similarity=0.688  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+|+
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~li   33 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLI   33 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            379999999999999999999999999986

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.19  E-value=1e-06  Score=65.84  Aligned_cols=30  Identities=43%  Similarity=0.711  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++||++|+.|+++|++|+|+
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vl   62 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVL   62 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            379999999999999999999999999986

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.19  E-value=7.3e-07  Score=65.78  Aligned_cols=30  Identities=27%  Similarity=0.526  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++| ++|+|+
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vl   53 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVV   53 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCSCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEE
Confidence            379999999999999999999999 999986

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.19  E-value=1.3e-06  Score=66.51  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHH---CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD---HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~---~G~~V~v~   89 (89)
                      ++|+|||||++|+++|+.|++   .|++|+|+
T Consensus         6 ~dVvIVGgG~aGl~aA~~La~~~~~G~~V~li   37 (538)
T 2aqj_A            6 KNIVIVGGGTAGWMAASYLVRALQQQANITLI   37 (538)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhcCCCCEEEEE
Confidence            799999999999999999999   99999986

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.18  E-value=1.1e-06  Score=64.69  Aligned_cols=29  Identities=34%  Similarity=0.609  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++  |++|+|+
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vl   67 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLV   67 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEE
Confidence            7999999999999999999999  9999986

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.18  E-value=1.4e-06  Score=65.56  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|++.|++|+|+
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~li   35 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVA   35 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999985

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.18  E-value=1.3e-06  Score=64.09  Aligned_cols=29  Identities=38%  Similarity=0.527  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~   30 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVI   30 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence            69999999999999999999999999986

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.17  E-value=1.7e-06  Score=63.60  Aligned_cols=29  Identities=41%  Similarity=0.471  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ++|+|||+|++|+++|..|+++|+  +|+||
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~li   32 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALI   32 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEE
Confidence            689999999999999999999999  88875

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.17  E-value=1.8e-06  Score=64.88  Aligned_cols=30  Identities=30%  Similarity=0.519  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|++.|++|+||
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~li   33 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALI   33 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            389999999999999999999999999986

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.17  E-value=1.6e-06  Score=64.89  Aligned_cols=29  Identities=31%  Similarity=0.472  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|++|+|+
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~li   34 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACV   34 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999986

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.17  E-value=1.6e-06  Score=65.63  Aligned_cols=29  Identities=28%  Similarity=0.573  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~ll   32 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLML   32 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEE
Confidence            79999999999999999999999999985

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.17  E-value=1.4e-06  Score=66.03  Aligned_cols=29  Identities=45%  Similarity=0.640  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|..|++.|++|+|+
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~li   37 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLI   37 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            79999999999999999999999999985

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.17  E-value=1.6e-06  Score=64.72  Aligned_cols=29  Identities=24%  Similarity=0.481  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|++|+|+
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~li   32 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIV   32 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            69999999999999999999999999986

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.16  E-value=1.7e-06  Score=64.40  Aligned_cols=29  Identities=28%  Similarity=0.471  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|++.|++|+|+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~li   30 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVV   30 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEE
Confidence            69999999999999999999999999986

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.16  E-value=1.8e-06  Score=65.95  Aligned_cols=30  Identities=33%  Similarity=0.428  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|.+|+++|++|+|+
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~li  241 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLM  241 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEE
Confidence            479999999999999999999999999875

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.16  E-value=1.6e-06  Score=65.22  Aligned_cols=30  Identities=27%  Similarity=0.485  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|++.|++|+|+
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~li   40 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLV   40 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEE
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.16  E-value=1.7e-06  Score=65.98  Aligned_cols=30  Identities=30%  Similarity=0.589  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+.+|..|++.|++|+|+
T Consensus        32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~li   61 (519)
T 3qfa_A           32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVL   61 (519)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999985

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.16  E-value=1.8e-06  Score=66.13  Aligned_cols=30  Identities=30%  Similarity=0.362  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHH---CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD---HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~---~G~~V~v~   89 (89)
                      .++|+|||+|++|+++|+.|++   .|++|+|+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~li   57 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLL   57 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEE
Confidence            4799999999999999999999   99999986

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.15  E-value=2e-06  Score=64.58  Aligned_cols=30  Identities=37%  Similarity=0.607  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~   58 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIV   58 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEE
Confidence            489999999999999999999999999986

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.15  E-value=1.5e-06  Score=66.04  Aligned_cols=30  Identities=33%  Similarity=0.376  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHH------------CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD------------HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~------------~G~~V~v~   89 (89)
                      .++|+|||||++|+.+|..|++            .|++|+|+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~li   48 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLI   48 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEE
Confidence            3799999999999999999999            99999986

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.15  E-value=1.3e-06  Score=67.10  Aligned_cols=30  Identities=30%  Similarity=0.596  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus       121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vl  150 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAAKKAGANVILV  150 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999986

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.14  E-value=1.1e-06  Score=66.23  Aligned_cols=29  Identities=38%  Similarity=0.454  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHH---CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD---HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~---~G~~V~v~   89 (89)
                      +||+|||||++|+++|+.|++   +|++|+|+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lv   34 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLV   34 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEE
Confidence            699999999999999999999   99999986

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.14  E-value=1.7e-06  Score=64.45  Aligned_cols=30  Identities=30%  Similarity=0.449  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|++.|++|+|+
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~li   35 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCI   35 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            489999999999999999999999999986

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.13  E-value=2e-06  Score=64.02  Aligned_cols=29  Identities=24%  Similarity=0.509  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|++.|++|+|+
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~li   32 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIV   32 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            79999999999999999999999999986

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.13  E-value=2.2e-06  Score=64.91  Aligned_cols=29  Identities=31%  Similarity=0.547  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+.+|..|++.|++|+|+
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~li   31 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVALV   31 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999986

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.13  E-value=1.8e-06  Score=66.30  Aligned_cols=30  Identities=23%  Similarity=0.437  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .++|+|||+|++|+++|..|+++  |++|+||
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vi   67 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMV   67 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEE
Confidence            47999999999999999999998  8899986

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.13  E-value=1.7e-06  Score=65.52  Aligned_cols=30  Identities=27%  Similarity=0.491  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|++ .|++|+|+
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~li   33 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVI   33 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEE
Confidence            3799999999999999999999 99999986

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.13  E-value=2.2e-06  Score=64.17  Aligned_cols=29  Identities=28%  Similarity=0.509  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|++.|++|+|+
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~li   35 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCI   35 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            79999999999999999999999999986

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.12  E-value=1.9e-06  Score=64.37  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|++.|++|+|+
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~li   33 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALI   33 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            379999999999999999999999999986

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.12  E-value=2.1e-06  Score=66.41  Aligned_cols=30  Identities=27%  Similarity=0.524  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||||++|+.+|+.|+++|++|+|+
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~Ll   47 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGLV   47 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            389999999999999999999999999985

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.12  E-value=1.6e-06  Score=67.30  Aligned_cols=29  Identities=41%  Similarity=0.565  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC------CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH------GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~------G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++      |++|+|+
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vl   70 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLV   70 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEE
Confidence            7999999999999999999999      9999986

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.11  E-value=2.4e-06  Score=62.96  Aligned_cols=29  Identities=38%  Similarity=0.713  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|++|+++|+.|+++|++|+||
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~   32 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHII   32 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            69999999999999999999999999986

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.10  E-value=2.5e-06  Score=64.12  Aligned_cols=29  Identities=31%  Similarity=0.578  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|++.|++|+|+
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~li   35 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIV   35 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            79999999999999999999999999986

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.10  E-value=1.9e-06  Score=64.03  Aligned_cols=29  Identities=28%  Similarity=0.477  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++  |++|+|+
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~Li  110 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIV  110 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEE
Confidence            7999999999999999999997  9999986

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.10  E-value=2.5e-06  Score=66.39  Aligned_cols=29  Identities=34%  Similarity=0.636  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|++|+++|+.|+++|++|+|+
T Consensus         8 ~DVvVVGaG~AGl~AA~~la~~G~~V~vl   36 (588)
T 2wdq_A            8 FDAVVIGAGGAGMRAALQISQSGQTCALL   36 (588)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999986

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.10  E-value=2.5e-06  Score=67.14  Aligned_cols=29  Identities=28%  Similarity=0.525  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|++|+.||+.|+++|++|+|+
T Consensus        19 ~DVvVVG~G~AGl~AAl~aa~~G~~V~vl   47 (621)
T 2h88_A           19 FDAVVVGAGGAGLRAAFGLSEAGFNTACV   47 (621)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999985

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.09  E-value=2.1e-06  Score=65.13  Aligned_cols=30  Identities=23%  Similarity=0.492  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|++ .|++|+|+
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~li   37 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVV   37 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEE
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEE
Confidence            3799999999999999999999 99999986

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.09  E-value=2.8e-06  Score=67.73  Aligned_cols=30  Identities=37%  Similarity=0.598  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+.||+.|+++|.+|+|+
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLI   57 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLL   57 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEE
Confidence            489999999999999999999999999985

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.09  E-value=2.1e-06  Score=64.24  Aligned_cols=30  Identities=27%  Similarity=0.433  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|++.|++|+|+
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~li   34 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLV   34 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            379999999999999999999999999986

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.08  E-value=2.1e-06  Score=67.16  Aligned_cols=30  Identities=27%  Similarity=0.499  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      ..+|+|||+||+||++|+.|++ .|++|+||
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~vi   62 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIV   62 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEE
Confidence            4799999999999999999999 99999986

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.08  E-value=2.9e-06  Score=67.54  Aligned_cols=30  Identities=27%  Similarity=0.536  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+.||+.|++.|.+|+|+
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLI   56 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMF   56 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999985

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.08  E-value=2.4e-06  Score=62.51  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHH---CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD---HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~---~G~~V~v~   89 (89)
                      ++|+|||+|++|+++|..|++   .|++|+|+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vi   33 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVI   33 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEE
Confidence            589999999999999999999   89999986

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.07  E-value=2e-06  Score=64.32  Aligned_cols=29  Identities=28%  Similarity=0.295  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ++|+|||+|++|+++|..|+++  |++|+||
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvi   34 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMI   34 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEE
Confidence            6999999999999999999999  8999986

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.07  E-value=3.2e-06  Score=63.36  Aligned_cols=29  Identities=28%  Similarity=0.519  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|++.|++|+|+
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~li   35 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAV   35 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999986

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.07  E-value=3.7e-06  Score=64.31  Aligned_cols=30  Identities=30%  Similarity=0.602  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+.+|..|+++|++|+||
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~ii   45 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVI   45 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEE
Confidence            379999999999999999999999999986

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.06  E-value=3.6e-06  Score=61.89  Aligned_cols=30  Identities=43%  Similarity=0.736  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc--eEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE--VLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~--V~v~   89 (89)
                      .++|+|||+|++|+++|..|+++|++  |+|+
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~li   40 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVI   40 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEE
Confidence            37999999999999999999999997  8875

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.06  E-value=2.6e-06  Score=63.49  Aligned_cols=29  Identities=45%  Similarity=0.658  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++  |++|+||
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vi   33 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLI   33 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEE
Confidence            6999999999999999999998  8999986

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.05  E-value=3.7e-06  Score=65.10  Aligned_cols=29  Identities=38%  Similarity=0.579  Sum_probs=28.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|++|+|+
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~Ll   61 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLI   61 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            79999999999999999999999999986

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.05  E-value=3.7e-06  Score=66.87  Aligned_cols=30  Identities=37%  Similarity=0.564  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+.||+.|+++|.+|+|+
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLI   50 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLI   50 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999985

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.05  E-value=4.1e-06  Score=63.06  Aligned_cols=29  Identities=31%  Similarity=0.586  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHH---CCCc---eEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD---HGHE---VLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~---~G~~---V~v~   89 (89)
                      ++|+|||+|++|+++|..|++   .|++   |+||
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~   37 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCF   37 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEE
Confidence            699999999999999999999   9999   9986

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.04  E-value=4.3e-06  Score=63.32  Aligned_cols=30  Identities=40%  Similarity=0.591  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      .++|+|||+|++||++|+.|+++| ++|+||
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~   39 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLY   39 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEE
Confidence            379999999999999999999999 799986

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.04  E-value=3.7e-06  Score=66.28  Aligned_cols=29  Identities=38%  Similarity=0.484  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHH-----CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD-----HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~-----~G~~V~v~   89 (89)
                      .+|+|||+||+||++|..|++     .|++|+||
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~vi   42 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRII   42 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEE
Confidence            799999999999999999999     99999986

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.04  E-value=4.1e-06  Score=64.29  Aligned_cols=29  Identities=45%  Similarity=0.610  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+.||+.|+++|++|+++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~li   30 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLF   30 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEE
Confidence            58999999999999999999999999985

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.03  E-value=2.5e-06  Score=64.39  Aligned_cols=29  Identities=28%  Similarity=0.464  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC---CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH---GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~---G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++   |++|+|+
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~li   34 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVI   34 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEE
Confidence            7999999999999999999999   9999986

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.03  E-value=2.3e-06  Score=63.39  Aligned_cols=29  Identities=24%  Similarity=0.417  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-----CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-----HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-----~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|     ++|+||
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~li   64 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFL   64 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEE
Confidence            69999999999999999999999     899886

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.02  E-value=4.9e-06  Score=67.10  Aligned_cols=30  Identities=40%  Similarity=0.609  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~  365 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVL  365 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            479999999999999999999999999986

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.02  E-value=3.8e-06  Score=62.43  Aligned_cols=29  Identities=41%  Similarity=0.526  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ++|+|||+|++|+++|..|++.  |++|+||
T Consensus         4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vi   34 (449)
T 3kd9_A            4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVF   34 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHHHhCcCCCEEEE
Confidence            7999999999999999999998  7899886

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.02  E-value=3.9e-06  Score=61.05  Aligned_cols=30  Identities=33%  Similarity=0.413  Sum_probs=26.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      .|||+|||+|++|+++|.+|++.|.  +|+|+
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtli   33 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLI   33 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEE
Confidence            3799999999999999999998775  77775

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.02  E-value=3.8e-06  Score=66.54  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|.+|++||+.|+++|++|+|+
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G~~V~vl   34 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKGLSTIVL   34 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             ccEEEECchHHHHHHHHHHHHCCCcEEEE
Confidence            69999999999999999999999999986

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.00  E-value=4.9e-06  Score=65.27  Aligned_cols=30  Identities=37%  Similarity=0.573  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+.+|..|+++|++|+|+
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~li   75 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMF   75 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEE
Confidence            479999999999999999999999999985

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.00  E-value=6e-06  Score=60.91  Aligned_cols=29  Identities=48%  Similarity=0.717  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCc--eEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHE--VLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~--V~v~   89 (89)
                      ++|+|||+|++|+++|..|+++|++  |+|+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li   33 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLI   33 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEE
Confidence            5899999999999999999999997  8775

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.99  E-value=4e-06  Score=63.70  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ++|+|||+|++|+++|..|+++  |++|+||
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~li   32 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMF   32 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEE
Confidence            5899999999999999999998  7899886

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.98  E-value=4.2e-06  Score=64.47  Aligned_cols=28  Identities=46%  Similarity=0.769  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|++|+++|+.|++ |++|+|+
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vl   36 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVL   36 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEE
Confidence            799999999999999999999 9999985

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.98  E-value=6.3e-06  Score=61.47  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++|+|+
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~   35 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHM   35 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.97  E-value=6.1e-06  Score=66.00  Aligned_cols=29  Identities=34%  Similarity=0.670  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .||+|||+|++|+++|+.|+++|+ +|+|+
T Consensus         5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vl   34 (830)
T 1pj5_A            5 PRIVIIGAGIVGTNLADELVTRGWNNITVL   34 (830)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEE
Confidence            799999999999999999999999 99986

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.96  E-value=5e-06  Score=64.94  Aligned_cols=29  Identities=34%  Similarity=0.551  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      +||+|||+|++|+++|+.|+++|  .+|+|+
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vl   36 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALI   36 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEE
Confidence            69999999999999999999999  999985

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.94  E-value=8.3e-06  Score=60.68  Aligned_cols=29  Identities=38%  Similarity=0.618  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ++|+|||+|++|+++|..|+++|+  +|+|+
T Consensus         5 ~~vvIIGgG~aGl~aA~~l~~~g~~~~V~li   35 (431)
T 1q1r_A            5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLV   35 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CcEEEEcCHHHHHHHHHHHHccCcCCCEEEE
Confidence            799999999999999999999998  68875

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.93  E-value=9.1e-06  Score=62.74  Aligned_cols=30  Identities=37%  Similarity=0.553  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+.+|..|++.|++|+||
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~ii   38 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGI   38 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEE
Confidence            379999999999999999999999999986

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.93  E-value=9.6e-06  Score=61.92  Aligned_cols=30  Identities=37%  Similarity=0.591  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+|++|+.+|.+|++.|++|+|+
T Consensus         7 ~~D~iIvG~G~aG~~~A~~L~~~g~~Vlvl   36 (546)
T 1kdg_A            7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLL   36 (546)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceeEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            489999999999999999999999999985

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.92  E-value=8.5e-06  Score=62.96  Aligned_cols=30  Identities=27%  Similarity=0.489  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+.+|..|++.|++|+||
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~ii   50 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAF   50 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEE
Confidence            379999999999999999999999999986

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.92  E-value=8.4e-06  Score=60.76  Aligned_cols=30  Identities=33%  Similarity=0.699  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++|+|||+|++|+++|+.|+++|+ +|+||
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~   34 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLIL   34 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEE
Confidence            3799999999999999999999999 89986

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.92  E-value=8.2e-06  Score=66.80  Aligned_cols=30  Identities=37%  Similarity=0.605  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+.+|..|++.|++|+||
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~li  157 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLL  157 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            378999999999999999999999999986

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.91  E-value=9.5e-06  Score=59.08  Aligned_cols=29  Identities=38%  Similarity=0.516  Sum_probs=25.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++|+  +|+++
T Consensus         5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~li   35 (384)
T 2v3a_A            5 APLVIIGTGLAGYNLAREWRKLDGETPLLMI   35 (384)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCSSSCEEEE
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEE
Confidence            799999999999999999999995  46654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.91  E-value=6.8e-06  Score=65.19  Aligned_cols=30  Identities=20%  Similarity=0.506  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC------CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH------GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~------G~~V~v~   89 (89)
                      ..||+|||+|+|||+||+.|+++      |.+|+|+
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vl   57 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLV   57 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEE
Confidence            37999999999999999999998      9999985

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.91  E-value=8.4e-06  Score=62.85  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHH-HCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELL-DHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~-~~G~~V~v~   89 (89)
                      +||+|||+|++|+.+|..|+ +.|++|+||
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~vi   38 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGF   38 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEE
Confidence            79999999999999999999 999999986

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.90  E-value=8.1e-06  Score=64.07  Aligned_cols=30  Identities=33%  Similarity=0.562  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHH---H-CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELL---D-HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~---~-~G~~V~v~   89 (89)
                      ..||+|||+|++||+||+.|+   + +|.+|+|+
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vl   55 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLV   55 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEE
Confidence            379999999999999999999   6 89999985

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.90  E-value=5.6e-06  Score=61.44  Aligned_cols=29  Identities=52%  Similarity=0.814  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHH---CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD---HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~---~G~~V~v~   89 (89)
                      ++|+|||+|++|+++|..|++   .|++|+|+
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtli   36 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLI   36 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEE
Confidence            699999999999999999999   89999986

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.90  E-value=8.9e-06  Score=63.13  Aligned_cols=29  Identities=41%  Similarity=0.669  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +|++|||+||+|+.+|..+++.|.+|.++
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~kValI   71 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGARVLLF   71 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999885

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.90  E-value=6.6e-06  Score=62.11  Aligned_cols=30  Identities=27%  Similarity=0.413  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-C------CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-H------GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~------G~~V~v~   89 (89)
                      .++|+|||+||+|+++|..|++ +      |++|+||
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~li   39 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDML   39 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEE
Confidence            3799999999999999999999 7      9999986

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.89  E-value=7.9e-06  Score=59.72  Aligned_cols=28  Identities=39%  Similarity=0.504  Sum_probs=26.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .|++|||+|++|+++|..|++.| +|+|+
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~li   36 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVI   36 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEE
Confidence            69999999999999999999999 99885

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.88  E-value=9.5e-06  Score=59.88  Aligned_cols=30  Identities=37%  Similarity=0.593  Sum_probs=27.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc--eEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE--VLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~--V~v~   89 (89)
                      .+||+|||+|++|+++|..|+++|++  |+|+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~li   38 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVV   38 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEE
Confidence            47999999999999999999999984  8875

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.87  E-value=8.7e-06  Score=61.70  Aligned_cols=30  Identities=27%  Similarity=0.524  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .++|+|||+|++|+++|..|+++  |++|+|+
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~li   42 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIV   42 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEE
Confidence            47999999999999999999887  7899885

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.86  E-value=1.1e-05  Score=61.07  Aligned_cols=30  Identities=33%  Similarity=0.532  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      .++|+|||+|++|+.+|..|+++|  ++|+||
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vi   37 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIY   37 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEE
Confidence            379999999999999999999998  899886

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.84  E-value=1.1e-05  Score=60.71  Aligned_cols=29  Identities=31%  Similarity=0.588  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|++.  |++|+|+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~li   67 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTL   67 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEE
Confidence            6999999999999999999996  8899885

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.84  E-value=8.7e-06  Score=61.40  Aligned_cols=29  Identities=24%  Similarity=0.471  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC---CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG---HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G---~~V~v~   89 (89)
                      +||+|||+|++|+.+|..|+++|   ++|+|+
T Consensus        36 ~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~li   67 (490)
T 2bc0_A           36 SKIVVVGANHAGTACIKTMLTNYGDANEIVVF   67 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHGGGSEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCCeEEEE
Confidence            79999999999999999999988   999885

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.82  E-value=1.3e-05  Score=59.57  Aligned_cols=29  Identities=34%  Similarity=0.549  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      ++|+|||+|++|+++|..|++.+  ++|+|+
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI   33 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLI   33 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEE
Confidence            58999999999999999999876  678875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.81  E-value=1.3e-05  Score=61.27  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.+|+|||+|++|+.+|..|.+++++|+|+
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLI   71 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSII   71 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEE
Confidence            469999999999999999999999999985

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.80  E-value=1.9e-05  Score=60.69  Aligned_cols=30  Identities=27%  Similarity=0.427  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|.+|+.+|+.|+++|++|+|+
T Consensus        20 ~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~   49 (475)
T 3p1w_A           20 HYDVIILGTGLKECILSGLLSHYGKKILVL   49 (475)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999985

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.77  E-value=9.6e-06  Score=61.46  Aligned_cols=28  Identities=50%  Similarity=0.680  Sum_probs=26.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+|++|+++|..|+++ ++|+||
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vi  136 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALI  136 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEE
Confidence            6899999999999999999999 999986

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.76  E-value=1.8e-05  Score=58.34  Aligned_cols=30  Identities=37%  Similarity=0.571  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.||+|||+|+||+.+|..|.+.+++|+||
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itli   38 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMI   38 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEE
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEE
Confidence            359999999999999999998889999986

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.76  E-value=2e-05  Score=59.31  Aligned_cols=30  Identities=37%  Similarity=0.534  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      .+|++|||+|.+|+..|..|++ .|++|+|+
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvL   47 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLI   47 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEE
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEE
Confidence            4899999999999999999998 67899985

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.65  E-value=1.8e-05  Score=63.71  Aligned_cols=30  Identities=27%  Similarity=0.484  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC--------CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG--------HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G--------~~V~v~   89 (89)
                      .++|+|||+|++||++|+.|.++|        ++|+||
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~   93 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIY   93 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEE
Confidence            379999999999999999999999        999986

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.52  E-value=4.5e-05  Score=58.62  Aligned_cols=29  Identities=28%  Similarity=0.482  Sum_probs=27.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+|.+|+.+|..|++ |++|+|+
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvL   54 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVL   54 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEE
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEE
Confidence            3899999999999999999999 9999985

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.50  E-value=9.5e-05  Score=56.18  Aligned_cols=30  Identities=23%  Similarity=0.479  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+|++|+.+|..|++.|++|+|+
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~   34 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLML   34 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            379999999999999999999999999885

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.45  E-value=0.00014  Score=55.28  Aligned_cols=30  Identities=23%  Similarity=0.510  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+|++|+.+|..|++.|++|+|+
T Consensus        11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~   40 (507)
T 1coy_A           11 RVPALVIGSGYGGAVAALRLTQAGIPTQIV   40 (507)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999885

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.35  E-value=0.00013  Score=56.91  Aligned_cols=30  Identities=30%  Similarity=0.522  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      .+|++|||+|.||+.+|..|++.| .+|+|+
T Consensus         6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLll   36 (577)
T 3q9t_A            6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIV   36 (577)
T ss_dssp             EEEEEEESCSHHHHHHHHHHTTSTTSCEEEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCCcEEEE
Confidence            489999999999999999999998 699885

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.22  E-value=0.00031  Score=49.14  Aligned_cols=29  Identities=17%  Similarity=0.346  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv  174 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIV  174 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            69999999999999999999999999985

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.20  E-value=0.00025  Score=54.54  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      .+|++|||+|++|+.+|..|++. |++|+|+
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~   43 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALV   43 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEEE
Confidence            38999999999999999999998 8999885

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.20  E-value=0.0003  Score=54.71  Aligned_cols=30  Identities=33%  Similarity=0.558  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      .+|++|||+|++|+.+|..|++ .|++|+|+
T Consensus        24 ~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~   54 (587)
T 1gpe_A           24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVI   54 (587)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEE
Confidence            4899999999999999999999 89999885

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.19  E-value=0.00016  Score=55.02  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH   84 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~   84 (89)
                      -+||+|||+||+||++|..|.++|.
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~   63 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALD   63 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHC
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCC
Confidence            4799999999999999999988654

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.19  E-value=0.00026  Score=55.38  Aligned_cols=30  Identities=37%  Similarity=0.628  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      .+|++|||+|.||+.+|..|++. +++|+|+
T Consensus        19 ~yDyIIVGgG~AG~vlA~RLse~~~~~VLlL   49 (583)
T 3qvp_A           19 TVDYIIAGGGLTGLTTAARLTENPNISVLVI   49 (583)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCCcEEEE
Confidence            48999999999999999999985 7899885

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.15  E-value=0.00063  Score=43.73  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|..|...|..|.+.|++|+++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vi   48 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVV   48 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            479999999999999999999999998874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.14  E-value=0.0004  Score=48.16  Aligned_cols=30  Identities=27%  Similarity=0.515  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v  181 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIIL  181 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEE
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeee
Confidence            379999999999999999999999999985

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.12  E-value=0.00055  Score=50.71  Aligned_cols=30  Identities=30%  Similarity=0.527  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|++|+.+|..|++.|.+|+++
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv  178 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVI  178 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            479999999999999999999999999885

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.11  E-value=0.00023  Score=55.50  Aligned_cols=29  Identities=31%  Similarity=0.502  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      +|++|||+|.+|+.+|..|++ .|++|+|+
T Consensus         3 yD~IIVG~G~aG~v~A~rLse~~~~~Vlll   32 (566)
T 3fim_B            3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVL   32 (566)
T ss_dssp             EEEEESCCSTTHHHHHHHHTTSTTCCEEEE
T ss_pred             cCEEEECCcHHHHHHHHHHHhCcCCcEEEE
Confidence            799999999999999999999 78999885

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.08  E-value=0.00076  Score=41.61  Aligned_cols=29  Identities=34%  Similarity=0.660  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|+|+|..|...|..|.+.|++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~   33 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLI   33 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.06  E-value=0.0012  Score=41.93  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.+|+|+|.|..|...|..|.+.|++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vi   36 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVI   36 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            368999999999999999999999999875

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.00  E-value=0.00058  Score=51.35  Aligned_cols=30  Identities=27%  Similarity=0.272  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||.|.+|+++|..|.++|++|+++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~   38 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVN   38 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999999874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.99  E-value=0.00048  Score=51.59  Aligned_cols=30  Identities=33%  Similarity=0.459  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||.|.+|+++|..|.++|++|+++
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~   34 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVM   34 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEE
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEE
Confidence            368999999999999999999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.97  E-value=0.0006  Score=50.19  Aligned_cols=29  Identities=31%  Similarity=0.472  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|..|+.+|..|++.|.+|+++
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv  175 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIG  175 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999985

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.97  E-value=0.001  Score=41.74  Aligned_cols=29  Identities=31%  Similarity=0.493  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|+|+|..|...|..|.++|++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~i   35 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAV   35 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            58999999999999999999999999874

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.93  E-value=0.00096  Score=49.50  Aligned_cols=30  Identities=23%  Similarity=0.530  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|++|+.+|..|++.|.+|+++
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv  196 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVL  196 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            379999999999999999999999999875

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.93  E-value=0.00071  Score=50.50  Aligned_cols=30  Identities=17%  Similarity=0.461  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|++|+.+|..|++.|.+|+++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  200 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVV  200 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999985

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.93  E-value=0.00096  Score=49.86  Aligned_cols=29  Identities=31%  Similarity=0.477  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+|+
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  198 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLI  198 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            69999999999999999999999999985

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.91  E-value=0.001  Score=49.36  Aligned_cols=30  Identities=20%  Similarity=0.489  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  199 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTIL  199 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            379999999999999999999999999885

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.90  E-value=0.0011  Score=39.75  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=26.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      ++|+|+|+|..|...+..|.+.| ++|+++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~   35 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVA   35 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEE
Confidence            68999999999999999999999 888763

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.85  E-value=0.0012  Score=49.14  Aligned_cols=30  Identities=23%  Similarity=0.479  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  212 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVV  212 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            379999999999999999999999999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.84  E-value=0.0018  Score=41.37  Aligned_cols=29  Identities=21%  Similarity=0.391  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++|+|+|..|...+..|.+.|++|+++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vi   32 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVI   32 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            68999999999999999999999999874

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.83  E-value=0.001  Score=48.43  Aligned_cols=29  Identities=38%  Similarity=0.531  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  172 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLI  172 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            68999999999999999999999999885

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.78  E-value=0.0016  Score=47.26  Aligned_cols=30  Identities=33%  Similarity=0.520  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv  174 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVV  174 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            479999999999999999999999999875

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.77  E-value=0.0017  Score=45.90  Aligned_cols=30  Identities=27%  Similarity=0.482  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+..|..|++.|.+|+++
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv  195 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALY  195 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEE
Confidence            369999999999999999999999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.76  E-value=0.0017  Score=40.02  Aligned_cols=29  Identities=45%  Similarity=0.566  Sum_probs=26.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|+|+|..|...+..|.+.|++|+++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~   35 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAV   35 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            57999999999999999999999998864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.72  E-value=0.0018  Score=47.66  Aligned_cols=30  Identities=27%  Similarity=0.494  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  174 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLV  174 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999999875

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.72  E-value=0.0018  Score=48.24  Aligned_cols=30  Identities=27%  Similarity=0.408  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  196 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLF  196 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            369999999999999999999999999985

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.65  E-value=0.0021  Score=48.03  Aligned_cols=29  Identities=45%  Similarity=0.606  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv  195 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVV  195 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            69999999999999999999999999885

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.64  E-value=0.0022  Score=48.17  Aligned_cols=30  Identities=40%  Similarity=0.640  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv  223 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLI  223 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            479999999999999999999999999985

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.61  E-value=0.0018  Score=48.49  Aligned_cols=30  Identities=33%  Similarity=0.557  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|++|+..|..|++.|.+|+++
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  215 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMI  215 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            479999999999999999999999999875

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.59  E-value=0.0024  Score=44.22  Aligned_cols=30  Identities=30%  Similarity=0.456  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|+.|+..|..|++.|.+|+++
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv  172 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLI  172 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            379999999999999999999999999875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.59  E-value=0.0021  Score=42.06  Aligned_cols=30  Identities=33%  Similarity=0.380  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      ..+|+|+|.|..|...|..|.+. |++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vi   69 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGI   69 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEE
Confidence            46899999999999999999999 9999875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.57  E-value=0.0025  Score=47.44  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  207 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAV  207 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            79999999999999999999999999985

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.57  E-value=0.0026  Score=47.27  Aligned_cols=30  Identities=30%  Similarity=0.447  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  200 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIV  200 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999985

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.55  E-value=0.0026  Score=47.92  Aligned_cols=30  Identities=27%  Similarity=0.388  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv  203 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVF  203 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999985

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.52  E-value=0.0021  Score=48.18  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv  214 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVV  214 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999985

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.52  E-value=0.0027  Score=44.44  Aligned_cols=30  Identities=17%  Similarity=0.366  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|...+..|.+.|.+|+|+
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVv   60 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVV   60 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            489999999999999999999999999985

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.50  E-value=0.003  Score=46.80  Aligned_cols=30  Identities=23%  Similarity=0.488  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv  178 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLL  178 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            379999999999999999999999999875

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.49  E-value=0.0029  Score=48.60  Aligned_cols=29  Identities=28%  Similarity=0.324  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  315 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVM  315 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            68999999999999999999999999985

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.49  E-value=0.0026  Score=43.98  Aligned_cols=30  Identities=33%  Similarity=0.540  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|+.|+..|..|++.|.+|+++
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv  173 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLL  173 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEE
Confidence            369999999999999999999999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.49  E-value=0.003  Score=48.22  Aligned_cols=30  Identities=37%  Similarity=0.691  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|+..|..|+++|++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~   37 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCL   37 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEE
Confidence            379999999999999999999999999875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.48  E-value=0.0018  Score=46.57  Aligned_cols=30  Identities=23%  Similarity=0.560  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|...+..|.+.|.+|+|+
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtVi   42 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLV   42 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999999985

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.48  E-value=0.0034  Score=46.07  Aligned_cols=30  Identities=27%  Similarity=0.463  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv  172 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTIL  172 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            479999999999999999999999999875

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.46  E-value=0.0035  Score=46.35  Aligned_cols=29  Identities=34%  Similarity=0.579  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  177 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMI  177 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            69999999999999999999999999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.45  E-value=0.0029  Score=44.22  Aligned_cols=30  Identities=33%  Similarity=0.430  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv  181 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVI  181 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            369999999999999999999999999875

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.0036  Score=46.92  Aligned_cols=30  Identities=33%  Similarity=0.486  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv  214 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLV  214 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence            379999999999999999999999999885

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.40  E-value=0.0033  Score=43.61  Aligned_cols=30  Identities=40%  Similarity=0.508  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+..|..|++.|.+|+++
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv  174 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLI  174 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            379999999999999999999999999875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.40  E-value=0.0022  Score=47.56  Aligned_cols=30  Identities=30%  Similarity=0.449  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli  206 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVV  206 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            379999999999999999999999999885

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.39  E-value=0.0033  Score=47.39  Aligned_cols=30  Identities=17%  Similarity=0.334  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv  205 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIF  205 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEE
Confidence            369999999999999999999999999985

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.37  E-value=0.0034  Score=43.86  Aligned_cols=30  Identities=33%  Similarity=0.448  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+..|..|++.|.+|+++
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv  188 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYII  188 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEE
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEE
Confidence            479999999999999999999999999875

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.37  E-value=0.004  Score=44.51  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|..|...|..|++.|++|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~   31 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVV   31 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.36  E-value=0.004  Score=44.63  Aligned_cols=30  Identities=50%  Similarity=0.677  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|...|..|++.|++|+++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~   48 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI   48 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            379999999999999999999999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.35  E-value=0.0036  Score=43.42  Aligned_cols=30  Identities=27%  Similarity=0.407  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v  202 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFML  202 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            479999999999999999999999999875

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.35  E-value=0.0032  Score=48.45  Aligned_cols=30  Identities=20%  Similarity=0.348  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+..|..|++.|.+|+++
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~  207 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVF  207 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEE
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEE
Confidence            479999999999999999999999999985

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.35  E-value=0.0042  Score=46.15  Aligned_cols=30  Identities=20%  Similarity=0.408  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  205 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVL  205 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            479999999999999999999999999875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.35  E-value=0.0043  Score=43.69  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~   33 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAY   33 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.35  E-value=0.0035  Score=47.01  Aligned_cols=30  Identities=13%  Similarity=0.252  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+-.|..|++.|.+|+++
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li  226 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLIS  226 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEE
Confidence            479999999999999999999999999874

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.33  E-value=0.0043  Score=46.21  Aligned_cols=30  Identities=27%  Similarity=0.318  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  216 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLM  216 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999985

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.33  E-value=0.0044  Score=43.81  Aligned_cols=29  Identities=38%  Similarity=0.611  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|+++|++|+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~   44 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLV   44 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            58999999999999999999999999875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.33  E-value=0.0046  Score=43.05  Aligned_cols=29  Identities=41%  Similarity=0.643  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|++.|++|+++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~   32 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLI   32 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence            58999999999999999999999999874

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.32  E-value=0.0038  Score=43.98  Aligned_cols=30  Identities=30%  Similarity=0.434  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+..|..|++.|.+|+++
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~  184 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLV  184 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEE
Confidence            379999999999999999999999999875

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.31  E-value=0.0046  Score=45.98  Aligned_cols=30  Identities=23%  Similarity=0.436  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  203 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVV  203 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEE
Confidence            379999999999999999999999999875

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.31  E-value=0.0045  Score=46.86  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  180 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLL  180 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence            369999999999999999999999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.30  E-value=0.0037  Score=46.54  Aligned_cols=29  Identities=31%  Similarity=0.481  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..+++.|.+|+++
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv  176 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLI  176 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceee
Confidence            58999999999999999999999999985

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.30  E-value=0.0043  Score=47.02  Aligned_cols=29  Identities=31%  Similarity=0.575  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|+..|..|+++|++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~   31 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCI   31 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.28  E-value=0.0048  Score=44.38  Aligned_cols=29  Identities=24%  Similarity=0.429  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|..|...|..|++.|++|+++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~   32 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVL   32 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.28  E-value=0.0034  Score=48.64  Aligned_cols=29  Identities=21%  Similarity=0.232  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..+++.|.+|+|+
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii  252 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVA  252 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEe
Confidence            79999999999999999999999999985

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.28  E-value=0.0051  Score=45.05  Aligned_cols=29  Identities=38%  Similarity=0.461  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|||+|.-|..-|..++..|++|+++
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~   35 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLY   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEE
Confidence            69999999999999999999999999985

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.26  E-value=0.0032  Score=48.48  Aligned_cols=30  Identities=20%  Similarity=0.396  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+..|..|++.+.+|+||
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~  214 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVF  214 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEE
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEE
Confidence            479999999999999999999999999885

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.25  E-value=0.0049  Score=47.11  Aligned_cols=29  Identities=28%  Similarity=0.457  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||.|..||..|..|+++|++|+.|
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~   50 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGY   50 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEE
Confidence            69999999999999999999999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.23  E-value=0.0033  Score=48.45  Aligned_cols=30  Identities=17%  Similarity=0.484  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+..|..|++.|.+|++|
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~  220 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVF  220 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEE
Confidence            479999999999999999999999999885

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.23  E-value=0.0047  Score=45.72  Aligned_cols=30  Identities=30%  Similarity=0.411  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  178 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLI  178 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEE
Confidence            369999999999999999999999999875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.22  E-value=0.0061  Score=42.04  Aligned_cols=30  Identities=40%  Similarity=0.623  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|.-|...|..|+++|++|+++
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~   48 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIG   48 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.22  E-value=0.0048  Score=46.94  Aligned_cols=29  Identities=34%  Similarity=0.752  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++|||.|..|+..|..|+++|++|+++
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~   37 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCV   37 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEE
Confidence            69999999999999999999999999875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.21  E-value=0.0046  Score=44.56  Aligned_cols=29  Identities=31%  Similarity=0.231  Sum_probs=26.4

Q ss_pred             ceEEEECCCHHHHH-HHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMS-TAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~-aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|.+|++ +|..|.++|++|+++
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~   34 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGC   34 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEE
Confidence            68999999999996 789999999999874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.21  E-value=0.004  Score=43.38  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i  184 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTII  184 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEE
Confidence            368999999999999999999999999875

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.21  E-value=0.0054  Score=45.96  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv  214 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVM  214 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence            68999999999999999999999999985

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.20  E-value=0.0054  Score=46.59  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv  239 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVM  239 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence            57999999999999999999999999985

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.19  E-value=0.0046  Score=45.69  Aligned_cols=30  Identities=10%  Similarity=0.096  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~   89 (89)
                      .++|+|||+|.+|+..|..|++.|.+ |+++
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~  242 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQS  242 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEE
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEE
Confidence            47999999999999999999999998 8874

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.19  E-value=0.0039  Score=43.58  Aligned_cols=30  Identities=33%  Similarity=0.529  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+..|..|++.|.+|+++
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v  181 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLI  181 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEE
Confidence            479999999999999999999999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.19  E-value=0.0032  Score=46.33  Aligned_cols=30  Identities=30%  Similarity=0.498  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .++|+|||+|.+|+..|..|++.  |.+|+++
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v  258 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMI  258 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEE
Confidence            47999999999999999999999  8888875

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.19  E-value=0.0059  Score=44.60  Aligned_cols=30  Identities=30%  Similarity=0.521  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv  181 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLL  181 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence            479999999999999999999999999875

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=96.17  E-value=0.0044  Score=46.41  Aligned_cols=30  Identities=17%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  227 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVV  227 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            379999999999999999999999999875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.16  E-value=0.0061  Score=45.43  Aligned_cols=30  Identities=30%  Similarity=0.403  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  201 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHII  201 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            379999999999999999999999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.16  E-value=0.0066  Score=43.01  Aligned_cols=29  Identities=38%  Similarity=0.563  Sum_probs=26.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ++|+|||+|..|...|..|++.|+  +|+++
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~   38 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLE   38 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE
Confidence            699999999999999999999998  88764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.14  E-value=0.0065  Score=44.30  Aligned_cols=30  Identities=37%  Similarity=0.539  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv  171 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVV  171 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            368999999999999999999999999875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.09  E-value=0.0048  Score=43.93  Aligned_cols=29  Identities=34%  Similarity=0.619  Sum_probs=26.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|-.|.+.|..|++.|++|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~   31 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFL   31 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            58999999999999999999999999874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.05  E-value=0.0078  Score=45.58  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|++|+.+|..|...|.+|+++
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~  219 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSAT  219 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999999875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.04  E-value=0.0075  Score=44.82  Aligned_cols=30  Identities=30%  Similarity=0.469  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv  209 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVL  209 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            479999999999999999999999999875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.04  E-value=0.0096  Score=42.39  Aligned_cols=29  Identities=28%  Similarity=0.628  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|++.|++|+++
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~   50 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVW   50 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEE
Confidence            69999999999999999999999999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.04  E-value=0.0068  Score=43.46  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|++.|++|+++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~   60 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVW   60 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEE
Confidence            469999999999999999999999999875

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.01  E-value=0.0078  Score=44.96  Aligned_cols=30  Identities=30%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  216 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVM  216 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            368999999999999999999999999885

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.00  E-value=0.0081  Score=44.49  Aligned_cols=30  Identities=33%  Similarity=0.410  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv  176 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVF  176 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            378999999999999999999999999875

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.99  E-value=0.0082  Score=42.71  Aligned_cols=29  Identities=31%  Similarity=0.352  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|++.|++|+++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~   33 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAW   33 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            68999999999999999999999999874

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.95  E-value=0.0096  Score=40.23  Aligned_cols=30  Identities=27%  Similarity=0.428  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||+|..|...|..|++.|++|+++
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~   48 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYY   48 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            379999999999999999999999999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.95  E-value=0.0093  Score=44.53  Aligned_cols=30  Identities=33%  Similarity=0.407  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|.+|+.++..+...|.+|+++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~  201 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAF  201 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999988764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.94  E-value=0.0096  Score=43.92  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|.+|+.++..+...|.+|+++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~  201 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMAT  201 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999988764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=95.91  E-value=0.0084  Score=41.12  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~  176 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLI  176 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEE
Confidence            379999999999999999999999999875

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=95.91  E-value=0.0061  Score=43.23  Aligned_cols=30  Identities=27%  Similarity=0.468  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|+..|..|++.|.+|+++
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv  192 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLV  192 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            379999999999999999999999999875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=95.91  E-value=0.0075  Score=41.90  Aligned_cols=29  Identities=34%  Similarity=0.481  Sum_probs=25.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+..|..|++.| +|+++
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v  191 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWI  191 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEE
Confidence            479999999999999999999998 57664

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=95.89  E-value=0.0093  Score=45.61  Aligned_cols=30  Identities=30%  Similarity=0.553  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  216 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLV  216 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            369999999999999999999999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.88  E-value=0.011  Score=44.51  Aligned_cols=30  Identities=20%  Similarity=0.346  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++|+|||+|.+|+-+|..+.+.|. +|+++
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv  294 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCL  294 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEE
Confidence            4799999999999999999999998 48875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.88  E-value=0.011  Score=43.30  Aligned_cols=30  Identities=30%  Similarity=0.462  Sum_probs=27.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|.+|+.++..|...|.+|+++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~  196 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIF  196 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            379999999999999999999999988764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.86  E-value=0.0081  Score=47.88  Aligned_cols=30  Identities=30%  Similarity=0.461  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|+|+|..|...|..|++.|++|+++
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~i   37 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHV   37 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEE
Confidence            389999999999999999999999999875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.86  E-value=0.011  Score=41.36  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|+++|++|+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~   30 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIW   30 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEE
Confidence            58999999999999999999999999875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.86  E-value=0.012  Score=39.47  Aligned_cols=30  Identities=30%  Similarity=0.508  Sum_probs=27.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|+ |-.|...+..|.++|++|+++
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~   51 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAM   51 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEE
Confidence            579999998 999999999999999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=95.85  E-value=0.0056  Score=41.66  Aligned_cols=29  Identities=28%  Similarity=0.386  Sum_probs=26.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.| +|+++
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v  169 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFF  169 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEE
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEE
Confidence            479999999999999999999999 88874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.83  E-value=0.0082  Score=45.12  Aligned_cols=30  Identities=17%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|.+|+.+|..|...|.+|+++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~  213 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGY  213 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999999875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.83  E-value=0.0035  Score=39.66  Aligned_cols=29  Identities=17%  Similarity=0.188  Sum_probs=26.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|..|...+..|.+.|++|+++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~   50 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVA   50 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            79999999999999999999999887663

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=95.82  E-value=0.0085  Score=41.14  Aligned_cols=30  Identities=33%  Similarity=0.376  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~  183 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLI  183 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEE
Confidence            379999999999999999999999999875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.81  E-value=0.012  Score=41.69  Aligned_cols=30  Identities=30%  Similarity=0.403  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|++.|++|+++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~   36 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGA   36 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            368999999999999999999999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.81  E-value=0.0069  Score=46.08  Aligned_cols=30  Identities=33%  Similarity=0.540  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+.+|..|++.|.+|+++
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv  384 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLL  384 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEE
Confidence            479999999999999999999999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.80  E-value=0.0081  Score=45.35  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC---CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH---GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~---G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.   |.+|+++
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv  223 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLC  223 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEE
Confidence            6999999999999999999999   9999985

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.79  E-value=0.0075  Score=42.60  Aligned_cols=29  Identities=45%  Similarity=0.539  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|-.|.+.|..|++.|++|+++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~   31 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLI   31 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            58999999999999999999999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.79  E-value=0.0046  Score=46.92  Aligned_cols=30  Identities=27%  Similarity=0.576  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|..|...|..|.+.|++|+|+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vI   32 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIV   32 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            489999999999999999999999999985

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.79  E-value=0.011  Score=42.48  Aligned_cols=29  Identities=24%  Similarity=0.450  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|+|+|..|..+++.+.+.|++|+++
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~v   30 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLV   30 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            58999999999999999999999999874

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.76  E-value=0.0077  Score=46.28  Aligned_cols=29  Identities=31%  Similarity=0.508  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC-CC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH-GH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~-G~-~V~v~   89 (89)
                      ++|.|||.|..|+..|..|+++ |+ +|+++
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~   49 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGF   49 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEE
Confidence            6999999999999999999999 99 99875

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.76  E-value=0.013  Score=42.03  Aligned_cols=29  Identities=34%  Similarity=0.527  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||+|.-|...|..|++.|++|+++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~   43 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILW   43 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            69999999999999999999999999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.75  E-value=0.013  Score=42.92  Aligned_cols=30  Identities=30%  Similarity=0.483  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|..|+.+|..|...|.+|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~  195 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTIL  195 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999998764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.74  E-value=0.014  Score=40.99  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|-+|...|..|++.|.+|+|+
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~  148 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTIT  148 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEE
Confidence            478999999999999999999999988874

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.72  E-value=0.012  Score=43.26  Aligned_cols=30  Identities=40%  Similarity=0.517  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||+|.-|.+.|..|+++|++|+++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~   58 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLW   58 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEE
Confidence            369999999999999999999999999874

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.72  E-value=0.011  Score=44.79  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|...+..|.+.|.+|+|+
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi   41 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVN   41 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEE
Confidence            479999999999999999999999999985

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.71  E-value=0.0094  Score=44.88  Aligned_cols=30  Identities=20%  Similarity=0.192  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC---CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH---GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~---G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.   |.+|+++
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv  219 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLA  219 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEE
Confidence            36999999999999999999999   9999985

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.70  E-value=0.012  Score=44.68  Aligned_cols=29  Identities=10%  Similarity=0.279  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..|++.|.+|+++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv  243 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVML  243 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            79999999999999999999999999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.68  E-value=0.011  Score=43.04  Aligned_cols=29  Identities=31%  Similarity=0.377  Sum_probs=26.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .+|+|||+|..|...|..|++.|+ +|+++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~   39 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLY   39 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEE
Confidence            699999999999999999999998 87654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.68  E-value=0.014  Score=42.98  Aligned_cols=30  Identities=33%  Similarity=0.430  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|..|+.+|..+...|.+|+++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~  197 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVL  197 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999988764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.64  E-value=0.026  Score=43.26  Aligned_cols=29  Identities=38%  Similarity=0.469  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~   83 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLV   83 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            68999999999999999999999999875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.60  E-value=0.013  Score=43.98  Aligned_cols=30  Identities=17%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv  211 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVV  211 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            379999999999999999999999999875

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.57  E-value=0.012  Score=44.51  Aligned_cols=29  Identities=24%  Similarity=0.442  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~   66 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAV   66 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.56  E-value=0.012  Score=40.72  Aligned_cols=30  Identities=33%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++.|.+|+++
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~  183 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSII  183 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEE
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEE
Confidence            379999999999999999999999999874

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.52  E-value=0.017  Score=41.93  Aligned_cols=29  Identities=34%  Similarity=0.497  Sum_probs=26.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .+|+|||+|..|...|..|+++|+ +|+++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~   44 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMF   44 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEE
Confidence            689999999999999999999999 86653

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.51  E-value=0.016  Score=40.73  Aligned_cols=30  Identities=20%  Similarity=0.307  Sum_probs=26.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|+ |..|...+..|.++|++|+++
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~   49 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGF   49 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEE
Confidence            579999998 999999999999999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.49  E-value=0.017  Score=41.21  Aligned_cols=28  Identities=39%  Similarity=0.567  Sum_probs=25.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|-.|.+.|..|+ .|++|+++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~   30 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVV   30 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEE
Confidence            68999999999999999999 99999874

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.48  E-value=0.021  Score=39.25  Aligned_cols=29  Identities=38%  Similarity=0.508  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+|..|...+..|.++|++|+++
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~   32 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGL   32 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999999864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=95.47  E-value=0.017  Score=42.81  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v  199 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLI  199 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            479999999999999999999999999875

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.46  E-value=0.013  Score=44.52  Aligned_cols=29  Identities=34%  Similarity=0.633  Sum_probs=26.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|+..|..|++ |++|+++
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~   64 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVAL   64 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEE
Confidence            3699999999999999999998 9999875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.45  E-value=0.019  Score=41.04  Aligned_cols=30  Identities=30%  Similarity=0.400  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|-+|.+.+..|++.|.+|+|+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~  147 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVL  147 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999888874

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.42  E-value=0.015  Score=41.57  Aligned_cols=29  Identities=31%  Similarity=0.429  Sum_probs=26.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ++|+|||+|..|...|..|++.|+ +|+++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~   34 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLF   34 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEE
Confidence            689999999999999999999998 87764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.42  E-value=0.014  Score=43.39  Aligned_cols=30  Identities=33%  Similarity=0.595  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++. |.+|+++
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv  189 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVV  189 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEE
Confidence            37999999999999999999999 9999875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.39  E-value=0.022  Score=40.43  Aligned_cols=30  Identities=30%  Similarity=0.406  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++.|||.|..|...|..|...|.+|+++
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~  186 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVG  186 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998874

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.39  E-value=0.011  Score=41.79  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|+++|++|+++
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~   44 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVY   44 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            68999999999999999999999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.39  E-value=0.022  Score=40.35  Aligned_cols=30  Identities=33%  Similarity=0.434  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++.|||.|..|...|..|...|.+|+++
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~  184 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVG  184 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999998864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.37  E-value=0.015  Score=40.57  Aligned_cols=29  Identities=28%  Similarity=0.414  Sum_probs=26.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .+|+|||+|-.|..+|..|++.|. +++++
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lv   61 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLL   61 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEE
Confidence            699999999999999999999997 66653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.36  E-value=0.02  Score=42.82  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+..|..|++.|.+|+++
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli  220 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLL  220 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence            479999999999999999999999999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.35  E-value=0.015  Score=40.96  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|-+|.+.|..|++.|.+|+|+
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~  148 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLA  148 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999988874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.35  E-value=0.017  Score=39.59  Aligned_cols=29  Identities=14%  Similarity=0.169  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+|..|...+..|.++|++|+++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~   34 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGT   34 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.34  E-value=0.02  Score=40.99  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|.+|...|..|++.|. +|+|+
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~  171 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMA  171 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEE
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEE
Confidence            4799999999999999999999998 88774

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.34  E-value=0.023  Score=41.21  Aligned_cols=28  Identities=25%  Similarity=0.536  Sum_probs=25.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .+|+|||+|..|...|..|+.+|+ +|++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L   33 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVL   33 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            689999999999999999999998 7655

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=95.33  E-value=0.011  Score=43.30  Aligned_cols=29  Identities=24%  Similarity=0.335  Sum_probs=26.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      ++|+|||+|..|...|..|++ .|++|+++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~   32 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVL   32 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEE
Confidence            589999999999999999998 59999874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.30  E-value=0.012  Score=41.24  Aligned_cols=29  Identities=24%  Similarity=0.442  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|++.|++|+++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~   30 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVW   30 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEE
Confidence            47999999999999999999999999875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.30  E-value=0.021  Score=41.17  Aligned_cols=29  Identities=45%  Similarity=0.702  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|.-|..-|..|+ +|++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~   40 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQ   40 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEE
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEE
Confidence            479999999999999999999 99999885

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.27  E-value=0.024  Score=38.31  Aligned_cols=29  Identities=34%  Similarity=0.438  Sum_probs=26.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|.+.|++|+++
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~   57 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVG   57 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999998864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.22  E-value=0.024  Score=41.74  Aligned_cols=30  Identities=27%  Similarity=0.533  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|+++|++|+++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~   51 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVY   51 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEE
Confidence            379999999999999999999999999875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.20  E-value=0.013  Score=40.95  Aligned_cols=29  Identities=34%  Similarity=0.386  Sum_probs=26.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC-----C-CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH-----G-HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~-----G-~~V~v~   89 (89)
                      ++|.|||+|..|...|..|++.     | ++|+++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~   43 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWI   43 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEE
Confidence            6899999999999999999999     9 999874

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.19  E-value=0.02  Score=41.04  Aligned_cols=29  Identities=28%  Similarity=0.211  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      ++|.|||.|..|...|..|++.| ++|+++
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~   54 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAY   54 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEE
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEE
Confidence            68999999999999999999999 999875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.17  E-value=0.025  Score=40.24  Aligned_cols=30  Identities=33%  Similarity=0.540  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|++.|++|+++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~   38 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIW   38 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            368999999999999999999999999875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.09  E-value=0.012  Score=42.39  Aligned_cols=28  Identities=29%  Similarity=0.398  Sum_probs=26.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +|.|||+|..|...|..|++.|++|+++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~   44 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVW   44 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            8999999999999999999999999875

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.08  E-value=0.017  Score=45.75  Aligned_cols=30  Identities=30%  Similarity=0.390  Sum_probs=27.7

Q ss_pred             CceEEEEC--CCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIG--AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG--~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||  +|..|+..|..|++.|.+|+++
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv  559 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIV  559 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEE
Confidence            46999998  9999999999999999999985

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=95.08  E-value=0.029  Score=40.80  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|..|...+..+.+.|++|.++
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~   43 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVL   43 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            479999999999999999999999999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.08  E-value=0.027  Score=42.25  Aligned_cols=29  Identities=31%  Similarity=0.481  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|+|.|..|...|..|.+.|++|+++
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvI   33 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVL   33 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            68999999999999999999999999885

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.06  E-value=0.031  Score=40.60  Aligned_cols=29  Identities=41%  Similarity=0.657  Sum_probs=26.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .+|.|||+|..|...|+.|++.|+ +|+++
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~   38 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLV   38 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEE
Confidence            689999999999999999999999 77764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.06  E-value=0.029  Score=41.64  Aligned_cols=30  Identities=20%  Similarity=0.328  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|..|..+|..|.+.|.+|+++
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~GakVvv~  202 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVT  202 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCEEEEECchHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998863

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.03  E-value=0.029  Score=39.55  Aligned_cols=29  Identities=34%  Similarity=0.582  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|..|...|..|++.|++|+++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~   59 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVW   59 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEE
Confidence            68999999999999999999999999874

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.02  E-value=0.028  Score=40.57  Aligned_cols=29  Identities=48%  Similarity=0.642  Sum_probs=25.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      .+|+|||+|..|.+.|+.|+..|+  ++.++
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~   38 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLI   38 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE
Confidence            699999999999999999999987  66653

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.01  E-value=0.034  Score=35.88  Aligned_cols=29  Identities=38%  Similarity=0.639  Sum_probs=26.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~   33 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVL   33 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEE
Confidence            68999998 999999999999999998764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.01  E-value=0.029  Score=40.25  Aligned_cols=28  Identities=39%  Similarity=0.576  Sum_probs=25.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .+|+|||+|..|...|..|+..|+ +|++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L   31 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVL   31 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEE
Confidence            589999999999999999999997 7554

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.01  E-value=0.019  Score=43.55  Aligned_cols=29  Identities=31%  Similarity=0.645  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+..|||.|..|+..|..|+++|++|+++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~   40 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGV   40 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEE
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEE
Confidence            58899999999999999999999999875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.99  E-value=0.02  Score=38.82  Aligned_cols=28  Identities=29%  Similarity=0.349  Sum_probs=26.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ++|.|||+|..|...|..|++.|++|++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~   51 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAII   51 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            6899999999999999999999999987

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=94.97  E-value=0.027  Score=42.29  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=19.7

Q ss_pred             CceEEEECCCHHHHHHHHHHH
Q 046976           60 KLKVAIIGAGLAGMSTAVELL   80 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~   80 (89)
                      .++|+|||+|..|+.+|..|+
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~  165 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILL  165 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHh
Confidence            379999999999999999999

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.95  E-value=0.028  Score=42.99  Aligned_cols=29  Identities=45%  Similarity=0.657  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~   34 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLY   34 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            58999999999999999999999999875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.93  E-value=0.023  Score=40.56  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++|.|||.|..|...|..|++.|+ +|+++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~   54 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAY   54 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEE
Confidence            3699999999999999999999999 88875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.93  E-value=0.021  Score=39.69  Aligned_cols=29  Identities=31%  Similarity=0.643  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|.+.|++|+++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~   32 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVT   32 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEE
Confidence            58999999999999999999999999875

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.92  E-value=0.024  Score=40.46  Aligned_cols=29  Identities=34%  Similarity=0.491  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||.+||-|.-|...|..|.++||+|++|
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~   34 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVW   34 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEE
Confidence            58999999999999999999999999986

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.92  E-value=0.024  Score=39.48  Aligned_cols=29  Identities=31%  Similarity=0.578  Sum_probs=26.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|.+.|++|+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~   34 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVS   34 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEE
Confidence            58999999999999999999999998764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=94.88  E-value=0.034  Score=38.51  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ++|.|||.|..|...|..|++.|+  +|+++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~   32 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGY   32 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEE
Confidence            479999999999999999999998  77764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=94.88  E-value=0.024  Score=42.68  Aligned_cols=30  Identities=33%  Similarity=0.486  Sum_probs=25.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHH----CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD----HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~----~G~~V~v~   89 (89)
                      .++++|||+|..|+..|..|++    .|.+|+++
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v  213 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQL  213 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEE
Confidence            3799999999999999999987    46778764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.86  E-value=0.033  Score=38.87  Aligned_cols=29  Identities=34%  Similarity=0.507  Sum_probs=26.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+ |..|...|..|.+.|++|+++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~   41 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAI   41 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEE
Confidence            58999999 999999999999999998874

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.85  E-value=0.029  Score=42.80  Aligned_cols=30  Identities=20%  Similarity=0.451  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +++|.|||.|.-|...|..|+++|++|+++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~   44 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIF   44 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEE
Confidence            479999999999999999999999999875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.83  E-value=0.017  Score=43.90  Aligned_cols=29  Identities=28%  Similarity=0.378  Sum_probs=26.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ++|.|||.|..|+..|..|+++  |++|+++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~   40 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVV   40 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            6899999999999999999998  7888874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=94.80  E-value=0.031  Score=46.00  Aligned_cols=29  Identities=31%  Similarity=0.466  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .+|+|||+|..|+.+|..|++.|. +|+++
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv  362 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLV  362 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEE
Confidence            599999999999999999999996 88875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.80  E-value=0.029  Score=39.07  Aligned_cols=29  Identities=34%  Similarity=0.606  Sum_probs=26.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|.+.|++|+++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~   33 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAF   33 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEE
Confidence            68999999999999999999999998874

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.77  E-value=0.041  Score=40.14  Aligned_cols=30  Identities=30%  Similarity=0.375  Sum_probs=26.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ..+|+|||+|..|.+.|..|+..|+ +++++
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~   37 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLF   37 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEE
Confidence            3699999999999999999999998 77653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.76  E-value=0.041  Score=40.08  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-+|.+++..|++.|. +|+|+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~  184 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIF  184 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEE
Confidence            4799999999999999999999998 78764

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.75  E-value=0.033  Score=39.41  Aligned_cols=29  Identities=28%  Similarity=0.319  Sum_probs=26.8

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIG-AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.||| .|..|.+.|..|++.|++|+++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~   51 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISIL   51 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEE
Confidence            5899999 9999999999999999999874

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.72  E-value=0.029  Score=40.14  Aligned_cols=30  Identities=27%  Similarity=0.258  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-+|...+..|++.|. +|+|+
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~  147 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVA  147 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence            3799999999999999999999998 88774

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.71  E-value=0.019  Score=43.31  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=26.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      ++|.|||.|..|+..|..|+++  |++|+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~   36 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVV   36 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            5899999999999999999999  8999875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.67  E-value=0.049  Score=37.47  Aligned_cols=30  Identities=33%  Similarity=0.543  Sum_probs=27.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|+ |..|...+..|.++|++|+++
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~   37 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVL   37 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            379999998 999999999999999999864

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=94.63  E-value=0.032  Score=42.25  Aligned_cols=30  Identities=20%  Similarity=0.379  Sum_probs=25.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .++|+|||+|.+|...+..|++.  +.+|+++
T Consensus       246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~  277 (501)
T 4b63_A          246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLI  277 (501)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCceEEEE
Confidence            47999999999999999999875  5677653

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=94.62  E-value=0.049  Score=38.90  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=26.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-+|.+++..|++.|. +|+|+
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~  157 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVA  157 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence            4799999999999999999999998 58764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.59  E-value=0.05  Score=38.16  Aligned_cols=30  Identities=33%  Similarity=0.493  Sum_probs=26.8

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIG-AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+| +|-+|...+..|++.|.+|+++
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~  149 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLC  149 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            47899999 8999999999999999997763

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.57  E-value=0.051  Score=38.65  Aligned_cols=30  Identities=27%  Similarity=0.441  Sum_probs=26.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-+|.+.+..|++.|. +|+|+
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~  150 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIA  150 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEE
Confidence            4799999999999999999999996 78764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.57  E-value=0.032  Score=39.69  Aligned_cols=29  Identities=34%  Similarity=0.603  Sum_probs=25.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      ++|.|||+|..|...|..|+++|  ++|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~   32 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFI   32 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE
Confidence            48999999999999999999999  677764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.56  E-value=0.035  Score=41.17  Aligned_cols=30  Identities=37%  Similarity=0.564  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++|+|+|+|..|..++..|...|. +|+++
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~  197 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVA  197 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEE
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEE
Confidence            4799999999999999999999998 78764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=94.54  E-value=0.034  Score=39.02  Aligned_cols=30  Identities=27%  Similarity=0.443  Sum_probs=26.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|..|...|..|.+.|++|+++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~  158 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLW  158 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEE
Confidence            369999999999999999999999988764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.51  E-value=0.035  Score=44.43  Aligned_cols=29  Identities=45%  Similarity=0.549  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~  341 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILK  341 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEE
Confidence            58999999999999999999999999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.49  E-value=0.055  Score=39.66  Aligned_cols=30  Identities=30%  Similarity=0.610  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ..+|+|||+|..|...|+.|+.+|+  ++.++
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~   50 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALV   50 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEE
Confidence            4799999999999999999999997  56553

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.49  E-value=0.047  Score=42.15  Aligned_cols=30  Identities=30%  Similarity=0.318  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|..|..+|..|...|.+|+++
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~  303 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVT  303 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.49  E-value=0.043  Score=40.05  Aligned_cols=30  Identities=47%  Similarity=0.716  Sum_probs=26.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ..+|+|||+|..|.+.|+.|++.|+  +++++
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~   36 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVI   36 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEE
Confidence            3699999999999999999999987  66653

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=94.47  E-value=0.046  Score=41.48  Aligned_cols=29  Identities=28%  Similarity=0.489  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|.-|...|..|+++|++|+++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~   31 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAF   31 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEE
Confidence            58999999999999999999999999875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.47  E-value=0.065  Score=39.40  Aligned_cols=30  Identities=30%  Similarity=0.515  Sum_probs=26.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ..+|.|||+|..|...|+.|+.+|+  ++.++
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~   52 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALV   52 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEE
Confidence            4799999999999999999999997  66653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=94.46  E-value=0.049  Score=40.31  Aligned_cols=29  Identities=28%  Similarity=0.481  Sum_probs=25.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|..+|.+|++.|. ++++
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~Itl   63 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITF   63 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4799999999999999999999998 5554

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=94.46  E-value=0.052  Score=39.55  Aligned_cols=30  Identities=27%  Similarity=0.406  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|+|+|..|...+..+.+.|++|+++
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~   41 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVL   41 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999999874

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=94.46  E-value=0.049  Score=42.19  Aligned_cols=30  Identities=23%  Similarity=0.312  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|..|...|..|++.|.+|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~  294 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVT  294 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=94.44  E-value=0.019  Score=47.04  Aligned_cols=30  Identities=20%  Similarity=0.220  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+|+.|+.+|..|++.|.+|+|+
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv  313 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVI  313 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEE
Confidence            368999999999999999999999999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=94.44  E-value=0.031  Score=42.51  Aligned_cols=30  Identities=20%  Similarity=0.526  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|.+|+..|..|++.|.+|+++
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~  215 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVF  215 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEE
Confidence            479999999999999999999999999875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.42  E-value=0.055  Score=39.35  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-+|.+++..|++.|. +|+|+
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~  178 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLF  178 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence            4799999999999999999999998 77764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.42  E-value=0.089  Score=36.48  Aligned_cols=30  Identities=30%  Similarity=0.383  Sum_probs=26.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|+ |..|...+..|.++|++|+++
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~   41 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGT   41 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence            478999998 999999999999999998763

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.41  E-value=0.05  Score=38.85  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=26.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-+|...+..|++.|. +|+|+
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~  156 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVT  156 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEE
Confidence            4799999999999999999999996 88764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=94.40  E-value=0.027  Score=40.95  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=26.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-------CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-------HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-------~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|++.|       ++|+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~   57 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMW   57 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEE
Confidence            58999999999999999999999       999874

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.39  E-value=0.046  Score=41.53  Aligned_cols=29  Identities=24%  Similarity=0.629  Sum_probs=26.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|+++|++|+++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~   30 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVF   30 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEE
Confidence            57999999999999999999999999875

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=94.35  E-value=0.056  Score=39.13  Aligned_cols=29  Identities=45%  Similarity=0.531  Sum_probs=26.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|.+.|..|++.|++|+++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~   45 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVG   45 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEE
Confidence            68999999999999999999999998764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=94.34  E-value=0.043  Score=38.32  Aligned_cols=29  Identities=34%  Similarity=0.452  Sum_probs=25.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|..+|..|++.|. +++|
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~l   57 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVL   57 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEE
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEE
Confidence            3799999999999999999999998 5554

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.33  E-value=0.027  Score=42.82  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             CceEEEECCCHHHHH-HHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMS-TAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~-aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||-|-+|++ +|..|.++|++|++.
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~   52 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGS   52 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEE
Confidence            379999999999997 699999999999863

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.33  E-value=0.056  Score=40.20  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|..|...+..+.+.|++|.++
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~   64 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSMGYRVAVL   64 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998874

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.32  E-value=0.045  Score=39.30  Aligned_cols=30  Identities=17%  Similarity=0.235  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++++|+|+|-+|.+++..|.+.|. +|+|+
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~  152 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVV  152 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            4799999999999999999999998 78764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.31  E-value=0.053  Score=38.96  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=26.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ++|.|||.|..|...|..|.+.|+  +|+++
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~   64 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGY   64 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEE
Confidence            699999999999999999999999  77764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.30  E-value=0.023  Score=40.54  Aligned_cols=29  Identities=28%  Similarity=0.290  Sum_probs=26.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-------CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-------HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-------~~V~v~   89 (89)
                      ++|.|||+|..|...|..|++.|       ++|+++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~   44 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMW   44 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEE
Confidence            68999999999999999999999       888874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.27  E-value=0.063  Score=39.01  Aligned_cols=29  Identities=31%  Similarity=0.381  Sum_probs=25.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .+|+|||+|..|.+.|..|+..|+ ++.++
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~   35 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLF   35 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEE
Confidence            699999999999999999999988 66553

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.25  E-value=0.063  Score=37.30  Aligned_cols=29  Identities=34%  Similarity=0.363  Sum_probs=26.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+++
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~   33 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGYEVYGA   33 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            68999998 999999999999999998763

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.24  E-value=0.016  Score=40.77  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|.+.|..|.++|++|+.+
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~   35 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVL   35 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEEC
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEe
Confidence            379999999999999999999999998864

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.23  E-value=0.062  Score=39.91  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|+|.|..|..+|..|.+.|.+|++
T Consensus       175 GktV~I~G~GnVG~~~A~~l~~~GakVvv  203 (355)
T 1c1d_A          175 GLTVLVQGLGAVGGSLASLAAEAGAQLLV  203 (355)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence            58999999999999999999999999986

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.22  E-value=0.051  Score=39.73  Aligned_cols=30  Identities=30%  Similarity=0.486  Sum_probs=25.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ..+|+|||+|..|.+.|+.|+..|+  ++.++
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~   40 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIV   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEE
Confidence            4799999999999999999999987  55543

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.21  E-value=0.068  Score=37.51  Aligned_cols=30  Identities=33%  Similarity=0.643  Sum_probs=26.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|+ |..|...+..|+++|++|+++
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~   50 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLPQGHEILVI   50 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGGGTCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            478999998 999999999999999998764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.20  E-value=0.04  Score=39.83  Aligned_cols=29  Identities=41%  Similarity=0.522  Sum_probs=25.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|..+|.+|++.|. +++|
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~l   65 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLL   65 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEE
Confidence            3699999999999999999999997 5554

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=94.16  E-value=0.045  Score=38.56  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=26.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|-+|.+.|..|++.| +|+++
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~  156 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIA  156 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEE
Confidence            368999999999999999999999 88874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.13  E-value=0.024  Score=38.32  Aligned_cols=29  Identities=21%  Similarity=0.145  Sum_probs=25.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+++|+|+|..|...|..|.+.|+ |+++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vi   37 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLA   37 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEE
Confidence            3689999999999999999999998 8764

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.11  E-value=0.061  Score=37.21  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=26.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~   32 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGC   32 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            68999998 999999999999999998864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=94.11  E-value=0.066  Score=38.83  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|+..|++|+++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~  179 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYY  179 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEE
Confidence            479999999999999999999999999864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.06  E-value=0.046  Score=36.05  Aligned_cols=29  Identities=38%  Similarity=0.618  Sum_probs=26.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~   34 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAV   34 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEE
Confidence            68999996 899999999999999998864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=94.03  E-value=0.043  Score=43.80  Aligned_cols=29  Identities=28%  Similarity=0.493  Sum_probs=27.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||+|.-|...|..|+++|++|+++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~  343 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMK  343 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEE
Confidence            68999999999999999999999999875

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=94.03  E-value=0.066  Score=38.58  Aligned_cols=29  Identities=31%  Similarity=0.499  Sum_probs=26.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|+|+|..|...+..|.+.|++|+++
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G~~v~~~   30 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMGFYVIVL   30 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            48999999999999999999999988763

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=94.01  E-value=0.077  Score=36.71  Aligned_cols=28  Identities=36%  Similarity=0.489  Sum_probs=25.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++.|||+|-.|...|..|.+.|++|+++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~  145 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVW  145 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence            8999999999999999999999988764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.01  E-value=0.065  Score=41.09  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||.|.-|...|..|+++|++|+++
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~   39 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAY   39 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999999875

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.01  E-value=0.069  Score=41.02  Aligned_cols=29  Identities=28%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|.-|...|..|+++|++|+++
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~   33 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAF   33 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999999875

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=93.98  E-value=0.053  Score=39.82  Aligned_cols=29  Identities=38%  Similarity=0.554  Sum_probs=25.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|..+|.+|++.|. ++++
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~l  147 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIIL  147 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            4799999999999999999999997 5554

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.97  E-value=0.055  Score=37.15  Aligned_cols=29  Identities=28%  Similarity=0.390  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHE-VLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~   89 (89)
                      ++|.|||+|..|...|..|++.|++ |.++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~   40 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVY   40 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEE
Confidence            6899999999999999999999998 6653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.97  E-value=0.073  Score=36.38  Aligned_cols=29  Identities=17%  Similarity=0.408  Sum_probs=26.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC----ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH----EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~----~V~v~   89 (89)
                      ++|.|||.|..|...|..|.+.|+    +|+++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~   35 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICS   35 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEE
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            589999999999999999999998    88874

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=93.94  E-value=0.07  Score=40.82  Aligned_cols=30  Identities=23%  Similarity=0.295  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|.|..|..+|..|...|.+|+++
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~  249 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVT  249 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=93.91  E-value=0.063  Score=38.81  Aligned_cols=30  Identities=33%  Similarity=0.423  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|...|++|+++
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~  184 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLY  184 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence            579999999999999999999999999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.90  E-value=0.072  Score=39.05  Aligned_cols=29  Identities=34%  Similarity=0.398  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||.|..|.+.|..|.+.|++|+++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~   37 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGY   37 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999999875

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.89  E-value=0.059  Score=38.23  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ++++|+|+|-+|.+++..|.+.|. +|+|+
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~  149 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIY  149 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence            689999999999999999999997 78774

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.88  E-value=0.085  Score=37.03  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=26.8

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|+ |..|...+..|.++|++|+++
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~   55 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGL   55 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            379999996 999999999999999998864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.86  E-value=0.083  Score=38.21  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=26.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|.+|++
T Consensus       188 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~  216 (366)
T 1yqd_A          188 GKHIGIVGLGGLGHVAVKFAKAFGSKVTV  216 (366)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            46899999999999999999999998865

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.83  E-value=0.057  Score=38.91  Aligned_cols=29  Identities=21%  Similarity=0.554  Sum_probs=25.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      .+|.|||+|..|...|+.|+.+|+  ++.++
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~   45 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLL   45 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            689999999999999999999998  67653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=93.82  E-value=0.084  Score=35.79  Aligned_cols=30  Identities=13%  Similarity=0.118  Sum_probs=25.7

Q ss_pred             CceEEEECCC---HHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAG---LAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G---~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|.|+.   -.|...|..|+++|++|++.
T Consensus        14 ~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~   46 (271)
T 3ek2_A           14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFT   46 (271)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEE
Confidence            5799999964   68999999999999998763

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.81  E-value=0.075  Score=40.24  Aligned_cols=29  Identities=17%  Similarity=0.375  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||.|.-|...|..|+++|++|+++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~   34 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIY   34 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEE
Confidence            68999999999999999999999999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=93.81  E-value=0.068  Score=40.06  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH   82 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~   82 (89)
                      .++|+|||+|.+|+..|..|++.
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~  169 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTD  169 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhh
Confidence            37999999999999999999974

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.74  E-value=0.089  Score=37.58  Aligned_cols=29  Identities=28%  Similarity=0.276  Sum_probs=26.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|.+|++
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~  205 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSV  205 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEE
Confidence            47999999999999999999999998875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.73  E-value=0.074  Score=37.99  Aligned_cols=30  Identities=27%  Similarity=0.477  Sum_probs=26.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC----CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG----HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G----~~V~v~   89 (89)
                      .++|.|||+|..|...|..|.+.|    ++|+++
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~   55 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMAS   55 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEE
Confidence            368999999999999999999999    788874

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.72  E-value=0.085  Score=37.25  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=26.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.+.|++|+++
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l   40 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAHRPTYIL   40 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence            68999998 999999999999999998864

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=93.72  E-value=0.092  Score=34.96  Aligned_cols=29  Identities=31%  Similarity=0.330  Sum_probs=25.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|.|+ |-.|...+..|+++|++|+++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~   31 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGI   31 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEE
Confidence            36889987 889999999999999998863

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.69  E-value=0.097  Score=38.49  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=25.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCC--ceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      .+|+|||+ |..|.+.|+.++.+|.  ++.++
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLi   40 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLY   40 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhcCCCCEEEEE
Confidence            69999997 9999999999999995  66653

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=93.69  E-value=0.067  Score=36.57  Aligned_cols=29  Identities=28%  Similarity=0.467  Sum_probs=26.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|||.|..|...|..|.+.|++|.++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~   32 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIIS   32 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999888764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.67  E-value=0.084  Score=37.07  Aligned_cols=28  Identities=29%  Similarity=0.511  Sum_probs=26.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      +++|+|+|-+|.+.+..|.+.|. +|+|+
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~  138 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVV  138 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEE
Confidence            89999999999999999999998 88774

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=93.67  E-value=0.09  Score=39.68  Aligned_cols=30  Identities=37%  Similarity=0.378  Sum_probs=27.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCC---ceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGH---EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~---~V~v~   89 (89)
                      ..+|+|||+ |.+|+.|+..+...|.   +|+++
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~  247 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKW  247 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEe
Confidence            469999999 9999999999999998   88875

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=93.67  E-value=0.063  Score=38.95  Aligned_cols=29  Identities=38%  Similarity=0.564  Sum_probs=24.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        59 ~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++||+|+|+|..|...|.+|++ .++|++
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~   43 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYI   43 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEE
Confidence            35899999999999999999976 477765

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=93.65  E-value=0.071  Score=38.37  Aligned_cols=28  Identities=36%  Similarity=0.571  Sum_probs=24.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v   88 (89)
                      .+|+|||+|..|.+.|..|+.+|+  ++.+
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L   36 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVI   36 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEE
Confidence            699999999999999999999885  4544

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.61  E-value=0.062  Score=36.64  Aligned_cols=29  Identities=17%  Similarity=0.391  Sum_probs=26.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC----CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG----HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G----~~V~v~   89 (89)
                      ++|.|||+|..|...|..|++.|    ++|+++
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~   37 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYY   37 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEE
Confidence            68999999999999999999999    688764

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=93.58  E-value=0.066  Score=38.36  Aligned_cols=29  Identities=31%  Similarity=0.452  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.+||-|.-|...|..|.++||+|++|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~   32 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVF   32 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEE
Confidence            58999999999999999999999999986

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.57  E-value=0.12  Score=35.14  Aligned_cols=30  Identities=27%  Similarity=0.247  Sum_probs=25.5

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+ |-.|...|..|+++|++|+++
T Consensus        19 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~   49 (249)
T 1o5i_A           19 DKGVLVLAASRGIGRAVADVLSQEGAEVTIC   49 (249)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            478889987 567999999999999998763

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.55  E-value=0.092  Score=37.87  Aligned_cols=29  Identities=21%  Similarity=0.224  Sum_probs=26.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+...|.+|++
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~  218 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATGAEVIV  218 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            47999999999999999999999998875

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.55  E-value=0.17  Score=34.44  Aligned_cols=30  Identities=30%  Similarity=0.347  Sum_probs=26.2

Q ss_pred             CceEEEECC-CH-HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+ |. .|...|..|+++|++|+++
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~   53 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVIS   53 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEe
Confidence            478999998 74 9999999999999998763

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.54  E-value=0.063  Score=40.68  Aligned_cols=30  Identities=30%  Similarity=0.582  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ..+|+|+|+|.+|..+|..|...|. +|+++
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~  218 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVV  218 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            3699999999999999999999998 88874

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=93.52  E-value=0.062  Score=42.14  Aligned_cols=30  Identities=27%  Similarity=0.216  Sum_probs=27.4

Q ss_pred             CceEEEEC--CCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIG--AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG--~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||  +|..|+..|..|++.|.+|+++
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv  554 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIV  554 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEE
Confidence            36899999  9999999999999999999875

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=93.51  E-value=0.1  Score=36.63  Aligned_cols=30  Identities=30%  Similarity=0.605  Sum_probs=26.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|+ |..|...+..|.++|++|+++
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~   57 (343)
T 2b69_A           27 RKRILITGGAGFVGSHLTDKLMMDGHEVTVV   57 (343)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEcCccHHHHHHHHHHHHCCCEEEEE
Confidence            478999998 999999999999999998764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.50  E-value=0.074  Score=40.12  Aligned_cols=30  Identities=37%  Similarity=0.536  Sum_probs=26.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ..+|+|+|+|-+|..+|..|...|. +|+++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~  222 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAV  222 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEE
Confidence            4799999999999999999999998 77764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=93.50  E-value=0.022  Score=44.53  Aligned_cols=28  Identities=43%  Similarity=0.485  Sum_probs=24.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVL   87 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~   87 (89)
                      .++|+|||+|..|+..|..|++.|.+|+
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vt  521 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTS  521 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCcc
Confidence            4799999999999999999999986553

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.44  E-value=0.11  Score=37.08  Aligned_cols=29  Identities=28%  Similarity=0.320  Sum_probs=26.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|. +|++
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~  197 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKASGAYPVIV  197 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4689999999999999999999999 8875

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=93.42  E-value=0.099  Score=38.37  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=26.7

Q ss_pred             CceEEEECCC-HHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAG-LAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G-~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||+| .+|..+|..|.++|..|+|+
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~  207 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSV  207 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEE
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEE
Confidence            5899999999 57999999999999988863

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=93.36  E-value=0.1  Score=39.91  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|+|.|..|...|..|...|.+|+++
T Consensus       211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~  240 (436)
T 3h9u_A          211 GKTACVCGYGDVGKGCAAALRGFGARVVVT  240 (436)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998874

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=93.35  E-value=0.12  Score=36.06  Aligned_cols=29  Identities=38%  Similarity=0.556  Sum_probs=26.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~   32 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVI   32 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            68999986 999999999999999999863

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=93.35  E-value=0.11  Score=36.18  Aligned_cols=30  Identities=27%  Similarity=0.296  Sum_probs=26.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|+ |..|...+..|.++|++|+++
T Consensus        14 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~   44 (335)
T 1rpn_A           14 TRSALVTGITGQDGAYLAKLLLEKGYRVHGL   44 (335)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence            479999987 999999999999999998764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.32  E-value=0.086  Score=37.90  Aligned_cols=29  Identities=28%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|.+|++
T Consensus       180 g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~  208 (360)
T 1piw_A          180 GKKVGIVGLGGIGSMGTLISKAMGAETYV  208 (360)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            46999999999999999999889998765

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.28  E-value=0.085  Score=38.86  Aligned_cols=30  Identities=20%  Similarity=0.234  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|..|...+..+.+.|++|.++
T Consensus        24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~   53 (403)
T 3k5i_A           24 SRKVGVLGGGQLGRMLVESANRLNIQVNVL   53 (403)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            379999999999999999999999998874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.26  E-value=0.12  Score=37.51  Aligned_cols=29  Identities=24%  Similarity=0.230  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+...|.+|++
T Consensus       195 g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~  223 (369)
T 1uuf_A          195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVA  223 (369)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            46899999999999999999889998764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.26  E-value=0.12  Score=36.92  Aligned_cols=29  Identities=28%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|.+|++
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~  197 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVC  197 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            46899999999999999999999998754

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=93.20  E-value=0.088  Score=38.05  Aligned_cols=29  Identities=31%  Similarity=0.550  Sum_probs=24.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v   88 (89)
                      +.+|+|||+|..|.+.|+.|+..++  ++.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L   35 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVI   35 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEE
Confidence            3699999999999999999999886  4544

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=93.19  E-value=0.11  Score=37.76  Aligned_cols=29  Identities=31%  Similarity=0.468  Sum_probs=24.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v   88 (89)
                      ..+|+|||+|..|.+.++.|+..++  ++.+
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L   39 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGI   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEE
Confidence            4799999999999999999998886  4443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.18  E-value=0.094  Score=37.29  Aligned_cols=29  Identities=24%  Similarity=0.097  Sum_probs=26.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|.+|++
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~  195 (340)
T 3s2e_A          167 GQWVVISGIGGLGHVAVQYARAMGLRVAA  195 (340)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            47999999999999999999999998865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.18  E-value=0.093  Score=37.42  Aligned_cols=29  Identities=28%  Similarity=0.163  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|.+|++
T Consensus       165 g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~  193 (339)
T 1rjw_A          165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVA  193 (339)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            46999999999999999999999998875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.18  E-value=0.13  Score=36.64  Aligned_cols=29  Identities=31%  Similarity=0.449  Sum_probs=26.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|. +|++
T Consensus       165 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~  194 (343)
T 2dq4_A          165 GKSVLITGAGPIGLMAAMVVRASGAGPILV  194 (343)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4689999999999999999999998 8875

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=93.17  E-value=0.14  Score=34.10  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|.|+ |-.|...|..|+++|++|+++
T Consensus         7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~   37 (244)
T 1cyd_A            7 GLRALVTGAGKGIGRDTVKALHASGAKVVAV   37 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence            368999987 778999999999999998763

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=93.16  E-value=0.13  Score=36.21  Aligned_cols=29  Identities=24%  Similarity=0.284  Sum_probs=26.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+++
T Consensus        28 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~   57 (352)
T 1sb8_A           28 KVWLITGVAGFIGSNLLETLLKLDQKVVGL   57 (352)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            68999998 999999999999999998763

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.12  E-value=0.13  Score=36.87  Aligned_cols=29  Identities=34%  Similarity=0.433  Sum_probs=25.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|..|+.++..+...|. +|++
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~  201 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVV  201 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4699999999999999998888998 6764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.12  E-value=0.078  Score=34.64  Aligned_cols=29  Identities=21%  Similarity=0.170  Sum_probs=25.3

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIG-AGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG-~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+| +|..|+.++..+.+.|.+|++
T Consensus        39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~   68 (198)
T 1pqw_A           39 GERVLIHSATGGVGMAAVSIAKMIGARIYT   68 (198)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEEeeCCChHHHHHHHHHHHcCCEEEE
Confidence            36899999 599999999999999998865

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=93.11  E-value=0.1  Score=37.92  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|...|++|+++
T Consensus       146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~  175 (333)
T 2d0i_A          146 GKKVGILGMGAIGKAIARRLIPFGVKLYYW  175 (333)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEE
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999998764

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=93.10  E-value=0.11  Score=37.28  Aligned_cols=30  Identities=30%  Similarity=0.502  Sum_probs=26.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|..|...+..+.+.|++|.++
T Consensus        11 ~~~ili~g~g~~~~~~~~a~~~~G~~v~~~   40 (391)
T 1kjq_A           11 ATRVMLLGSGELGKEVAIECQRLGVEVIAV   40 (391)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            479999999999999999999999988763

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.10  E-value=0.17  Score=34.85  Aligned_cols=30  Identities=20%  Similarity=0.240  Sum_probs=25.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+ |-.|...|..|+++|++|+++
T Consensus        21 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~   51 (267)
T 1vl8_A           21 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVA   51 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            467888876 557999999999999998763

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.10  E-value=0.1  Score=36.74  Aligned_cols=29  Identities=28%  Similarity=0.229  Sum_probs=26.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+...|.+|+.
T Consensus       143 g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~  171 (315)
T 3goh_A          143 QREVLIVGFGAVNNLLTQMLNNAGYVVDL  171 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            47999999999999999999889998875

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=93.09  E-value=0.09  Score=42.41  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=27.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      -++|.|||+|.-|..-|..++..|++|+++
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~  345 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAV  345 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcc
Confidence            379999999999999999999999999975

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=93.07  E-value=0.11  Score=37.89  Aligned_cols=30  Identities=23%  Similarity=0.309  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|...|++|+++
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~  193 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDCPISYF  193 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            478999999999999999999999999864

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=93.07  E-value=0.12  Score=39.92  Aligned_cols=30  Identities=23%  Similarity=0.262  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++.|+|.|..|...|..|...|.+|+++
T Consensus       247 GKTVgVIG~G~IGr~vA~~lrafGa~Viv~  276 (464)
T 3n58_A          247 GKVAVVCGYGDVGKGSAQSLAGAGARVKVT  276 (464)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence            479999999999999999999999999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=93.04  E-value=0.1  Score=37.56  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+...|.+|++
T Consensus       181 g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~  209 (357)
T 2cf5_A          181 GLRGGILGLGGVGHMGVKIAKAMGHHVTV  209 (357)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            46899999999999999998889998765

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=93.01  E-value=0.11  Score=35.85  Aligned_cols=30  Identities=17%  Similarity=0.279  Sum_probs=25.3

Q ss_pred             CceEEEECCC-HHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAG-LAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G-~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|++ -.|...|..|+++|++|+++
T Consensus        14 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~   44 (269)
T 3vtz_A           14 DKVAIVTGGSSGIGLAVVDALVRYGAKVVSV   44 (269)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            4788888875 47999999999999998763

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=93.01  E-value=0.15  Score=34.00  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=25.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+ |-.|...|..|+++|++|+++
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~   37 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGARVVAV   37 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            368999987 678999999999999998763

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=92.99  E-value=0.14  Score=36.93  Aligned_cols=29  Identities=21%  Similarity=0.351  Sum_probs=25.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+...|. +|++
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~  225 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIA  225 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            4699999999999999999999998 6654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=92.98  E-value=0.12  Score=34.75  Aligned_cols=30  Identities=27%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|.|+ |-.|...|..|+++|++|++.
T Consensus        14 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~   44 (249)
T 3f9i_A           14 GKTSLITGASSGIGSAIARLLHKLGSKVIIS   44 (249)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            478889987 457999999999999998763

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=92.98  E-value=0.12  Score=41.16  Aligned_cols=29  Identities=28%  Similarity=0.481  Sum_probs=25.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|||+|-.|..+|.+|++.|. ++++
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItL  355 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITF  355 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4799999999999999999999998 5554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	89
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	3e-09
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-08
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	4e-08
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	5e-08
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	7e-08
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	1e-07
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-07
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	4e-07
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	4e-07
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	4e-07
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	5e-07
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-07
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	5e-07
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	5e-07
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	6e-07
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	7e-07
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	7e-07
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	1e-06
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-06
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	2e-06
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	2e-06
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-06
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	5e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	5e-06
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	7e-06
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	7e-06
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	1e-05
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	1e-05
d1mv8a2	202	c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse	1e-05
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-05
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	6e-05
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	1e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	1e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	1e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	2e-04
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	2e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	3e-04
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	4e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	4e-04
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	4e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	4e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	4e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	5e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	5e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	5e-04
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	6e-04
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	6e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	7e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	8e-04
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	8e-04
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	9e-04
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	0.001
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	0.001
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.001
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.001
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	0.001
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.001
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.001
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.002
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.002
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	0.002
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	0.002
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	0.002
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	0.003
d1dlja2	196	c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD	0.003
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	0.003
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	0.004
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.004
d1lssa_	132	c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus ja	0.004
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	0.004

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 49.4 bits (117), Expect = 3e-09
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K+ I+GAG +G     +L + GH+V +I
Sbjct: 4  KILIVGAGFSGAVIGRQLAEKGHQVHII 31

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 46.7 bits (109), Expect = 4e-08
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          + VA++G G++G++ A  L   G + +L+
Sbjct: 1  MNVAVVGGGISGLAVAHHLRSRGTDAVLL 29

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 46.3 bits (108), Expect = 4e-08
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          PK  V I+GAG+AG+S A  L   GH+V ++
Sbjct: 30 PK-HVVIVGAGMAGLSAAYVLAGAGHQVTVL 59

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 5e-08
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          KV IIG+G++G++ A +L   G +V L+
Sbjct: 7  KVIIIGSGVSGLAAARQLQSFGMDVTLL 34

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (108), Expect = 7e-08
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
             I+G+GL G   A EL     +VL+I
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVI 30

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 45.0 bits (105), Expect = 1e-07
 Identities = 9/31 (29%), Positives = 21/31 (67%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           + +V ++G+G+ G+S+A+ L   G+ V ++
Sbjct: 5  SQKRVVVLGSGVIGLSSALILARKGYSVHIL 35

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 45.2 bits (105), Expect = 1e-07
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          +VA+IGAG++G++ A +L  HG  V + 
Sbjct: 3  RVAVIGAGVSGLAAAYKLKIHGLNVTVF 30

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 44.2 bits (103), Expect = 3e-07
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++G+G AG S A+   D G +V+LI
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILI 45

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 43.8 bits (102), Expect = 4e-07
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++GAG AG + ++     G  V+L+
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILV 48

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.7 bits (102), Expect = 4e-07
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          ++V +IGAG+ G+STA+ + +  H VL  
Sbjct: 1  MRVVVIGAGVIGLSTALCIHERYHSVLQP 29

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 43.7 bits (102), Expect = 4e-07
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          ++ V ++GAG +G+     L + G  V +I
Sbjct: 7  EVDVLVVGAGFSGLYALYRLRELGRSVHVI 36

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 5e-07
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K +VAIIGAG +G+     L   G + +++
Sbjct: 2  KTQVAIIGAGPSGLLLGQLLHKAGIDNVIL 31

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 43.2 bits (100), Expect = 5e-07
 Identities = 8/28 (28%), Positives = 19/28 (67%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          ++A++G  ++G++ A+ L D G +V + 
Sbjct: 6  RIAVVGGSISGLTAALMLRDAGVDVDVY 33

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 43.4 bits (101), Expect = 5e-07
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V IIG+G AG++ AV   D G +V+L+
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILL 52

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 43.2 bits (100), Expect = 5e-07
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            +IG GLAG+  AV     G   +++
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVL 34

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 43.2 bits (100), Expect = 6e-07
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++GAG  GM+   +L   G + LL+
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLV 32

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 42.8 bits (99), Expect = 7e-07
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            +IG G+ G + A  L        L 
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALF 33

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 7e-07
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++G G++GM+ A  L D G  V+++
Sbjct: 2  VVVVGGGISGMAAAKLLHDSGLNVVVL 28

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 42.3 bits (98), Expect = 1e-06
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V +IG G +G+  A+   + G  VLL+
Sbjct: 5  VIVIGGGPSGLMAAIGAAEEGANVLLL 31

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.1 bits (97), Expect = 1e-06
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 55 HYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          H+   +  V ++G GL     +  +  +G +VL +
Sbjct: 1  HHMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHM 35

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
            +AI+G+G +    A  LL        +
Sbjct: 3  YYIAIVGSGPSAFFAAASLLKAADTTEDL 31

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 2e-06
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            +IGAG AGM  A+++   G    L+
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALL 36

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 41.5 bits (95), Expect = 2e-06
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 62 KVAIIGAGLAGMSTAVELLDHG-HEVLLI 89
          +V ++GAG++G+S A  L + G  ++L++
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLIL 30

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 40.6 bits (94), Expect = 5e-06
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          +  IIGAG AG+  A +L   G  V + 
Sbjct: 6  ENIIIGAGAAGLFCAAQLAKLGKSVTVF 33

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 5e-06
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++G G+     +  L   G +VL I
Sbjct: 8  VIVLGTGITECILSGLLSVDGKKVLHI 34

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 40.1 bits (92), Expect = 7e-06
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 62 KVAIIGAGLAGMSTAVELLDHG-HEVLLI 89
          ++ IIGAG+ G + A EL+  G + + ++
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVL 31

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.7 bits (91), Expect = 7e-06
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K+A++GAG A +S A  L   G+  + I
Sbjct: 6  KIALLGAGPASISCASFLARLGYSDITI 33

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 39.6 bits (91), Expect = 1e-05
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 62 KVAIIGAGLAGMSTAVELLDHG--HEVLLI 89
          K+AIIGAG +G+ TA  LL      +V L 
Sbjct: 6  KIAIIGAGPSGLVTAKALLAEKAFDQVTLF 35

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (91), Expect = 1e-05
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 62 KVAIIGAGLAGMSTAVELL--DHGHEVLLI 89
          ++ ++G+G AG  TA  LL       V + 
Sbjct: 3  QICVVGSGPAGFYTAQHLLKHHSRAHVDIY 32

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.2 bits (90), Expect = 1e-05
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVL 87
          ++++I G G  G   A  L   GHEV+
Sbjct: 1  MRISIFGLGYVGAVCAGCLSARGHEVI 27

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.6 bits (88), Expect = 2e-05
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 61 LKVAIIGAGLAGMSTAVELLDHG-HEVLLI 89
          + + I GAG+ G+S A+ L   G  +V L+
Sbjct: 2  IDILIAGAGIGGLSCALALHQAGIGKVTLL 31

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 37.2 bits (85), Expect = 6e-05
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
            A++G G  G + A  L   G  VL  
Sbjct: 3  TYAVLGLGNGGHAFAAYLALKGQSVLAW 30

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.9 bits (84), Expect = 1e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 4/31 (12%)

Query: 63 VAIIGAGLAGMSTAVELL----DHGHEVLLI 89
          + IIG G +G   A E        G +V L+
Sbjct: 24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLV 54

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 63 VAIIGAGLAGMSTAVEL--LDHGHEVLLI 89
          +AI+GAG AG+  A+     +   ++ LI
Sbjct: 8  LAIVGAGGAGLRAAIAAAQANPNAKIALI 36

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.4 bits (82), Expect = 1e-04
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 62 KVAIIGAGLAGMSTAVEL--LDHGHEVLLI 89
          KV ++G+   G     EL  L    E+   
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWY 31

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (82), Expect = 2e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLL 88
          V IIG+G AG+S A+ L D    ++L
Sbjct: 10 VLIIGSGAAGLSLALRLADQHQVIVL 35

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 35.4 bits (80), Expect = 2e-04
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V+I+GAG  G + +V L+D+G+EV + 
Sbjct: 2  IVSILGAGAMGSALSVPLVDNGNEVRIW 29

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.7 bits (81), Expect = 3e-04
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          ++ I+G+G A  + A+       + LL 
Sbjct: 7  RLCIVGSGPAAHTAAIYAARAELKPLLF 34

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 35.0 bits (79), Expect = 4e-04
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V ++G+G     T   L D G +V + 
Sbjct: 4  SVLMLGSGFVTRPTLDVLTDSGIKVTVA 31

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 4e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V I+G+G AG + A+     G    L+
Sbjct: 4  VLIVGSGPAGAAAAIYSARKGIRTGLM 30

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 34.8 bits (78), Expect = 4e-04
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K+ ++G GL G S A +L   GH ++ +
Sbjct: 2  KIGVVGLGLIGASLAGDLRRRGHYLIGV 29

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 34.9 bits (79), Expect = 4e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V ++G G  G S A    D G +V ++
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIV 35

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 34.8 bits (78), Expect = 4e-04
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEV 86
          KV ++G G  G + A  +      +
Sbjct: 4  KVVVVGGGTGGATAAKYIKLADPSI 28

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 34.7 bits (78), Expect = 5e-04
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K  V ++GAGLA +S   EL   G++ L+ 
Sbjct: 3  KAPVVVLGAGLASVSFVAELRQAGYQGLIT 32

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 35.1 bits (79), Expect = 5e-04
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 5/32 (15%)

Query: 63 VAIIGAGLAGMSTAVELLDH-----GHEVLLI 89
          V I+GAG AG+  A  L ++       +V +I
Sbjct: 10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRII 41

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.8 bits (79), Expect = 5e-04
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            ++GAG  G   A+     G +V ++
Sbjct: 6  TLVVGAGPGGYVAAIRAAQLGQKVTIV 32

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 6e-04
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V +IG GL G   A      GH V+L+
Sbjct: 6  HVTVIGGGLMGAGIAQVAAATGHTVVLV 33

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (78), Expect = 6e-04
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          + IIG G  G++ A E      +V+++
Sbjct: 6  LIIIGGGSGGLAAAKEAAKFDKKVMVL 32

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 34.3 bits (77), Expect = 7e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          + +IG G  GM+ A     H  +V L+
Sbjct: 4  LIVIGGGSGGMAAARRAARHNAKVALV 30

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (77), Expect = 8e-04
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V IIG G AG   A++    G     +
Sbjct: 8  VVIIGGGPAGYVAAIKAAQLGFNTACV 34

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 34.1 bits (77), Expect = 8e-04
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K+ ++G G  G      L   GHEV   
Sbjct: 2  KITVLGCGALGQLWLTALCKQGHEVQGW 29

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 34.1 bits (77), Expect = 9e-04
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          + A++GAG+ G   A +    G  +L+ 
Sbjct: 6  QAAVLGAGIMGGGIAYQSASKGTPILMK 33

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score = 33.6 bits (76), Expect = 0.001
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLL 88
          K  + G+G  G + A+ L     EV +
Sbjct: 9  KAVVFGSGAFGTALAMVLSKKCREVCV 35

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 34.0 bits (76), Expect = 0.001
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
           V I+G GLAG+  A  L   G E  + 
Sbjct: 5  NVVIVGTGLAGVEVAFGLRASGWEGNIR 32

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 33.6 bits (76), Expect = 0.001
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V IIG G  G   A++    G +   I
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCI 32

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V +IGAG  G   A++    G +  LI
Sbjct: 6  VIVIGAGPGGYVAAIKSAQLGLKTALI 32

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%)

Query: 63 VAIIGAGLAGMSTAVEL------LDHGHEVLLI 89
          V I+GAG AG+S A  L       +    V L+
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLV 67

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 33.3 bits (75), Expect = 0.001
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K+ I+G+G AG + AV       + +LI
Sbjct: 7  KLLILGSGPAGYTAAVYAARANLQPVLI 34

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 33.4 bits (75), Expect = 0.001
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          + IIG G  G   A+     G   +L+
Sbjct: 8  LLIIGGGPGGYVAAIRAGQLGIPTVLV 34

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 5/34 (14%)

Query: 53 PEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
          P H         +IG G A  + A  +       
Sbjct: 2  PSHVP-----FLLIGGGTAAFAAARSIRARDPGA 30

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
             IG G  G+++      +G +  LI
Sbjct: 5  YIAIGGGSGGIASINRAAMYGQKCALI 31

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 62 KVAIIGAGLAGMSTAVEL-LDHGHEVLLI 89
           V ++GAG AG+S A E+  +   +V +I
Sbjct: 35 DVVVVGAGSAGLSAAYEISKNPNVQVAII 63

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 32.8 bits (74), Expect = 0.002
 Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 59 PKLKVAIIGAGLAGMSTAVELLDHG-HEVLLI 89
          PK K+ ++G+G+ G   A  ++     +V+L 
Sbjct: 2  PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLF 33

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 32.7 bits (74), Expect = 0.002
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 61 LKVAIIGAGLAGMSTAVELL--DHGHEVLLI 89
          +K+ I+G G  G STA  LL      E++LI
Sbjct: 1  MKIGIVGLGRVGSSTAFALLMKGFAREMVLI 31

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 32.4 bits (72), Expect = 0.003
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          KV I+G G  G   A + L   +EV +I
Sbjct: 2  KVVIVGNGPGGFELA-KQLSQTYEVTVI 28

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 32.6 bits (73), Expect = 0.003
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
          K+A+ G+G  G+S  V LL   +EV ++
Sbjct: 2  KIAVAGSGYVGLSLGV-LLSLQNEVTIV 28

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 32.5 bits (72), Expect = 0.003
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 58 GPKLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89
          G + ++ +IGA G  G   A   LD GH   L+
Sbjct: 1  GSRSRILLIGATGYIGRHVAKASLDLGHPTFLL 33

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (72), Expect = 0.004
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
            +IG G  G+++A    + G    ++
Sbjct: 6  YLVIGGGSGGLASARRAAELGARAAVV 32

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.2 bits (72), Expect = 0.004
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 62 KVAIIGAGLAGMSTAVEL--LDHGHEVLLI 89
           V I+GAG +G+S A  +       +V +I
Sbjct: 52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCII 81

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 31.8 bits (71), Expect = 0.004
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 62 KVAIIGAGLAGMSTAVELLDHGHEV 86
           + I G G  G + A  L + GH++
Sbjct: 2  YIIIAGIGRVGYTLAKSLSEKGHDI 26

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 32.3 bits (72), Expect = 0.004
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
          V I+G+G  G + A EL+  G++V + 
Sbjct: 7  VVIVGSGPIGCTYARELVGAGYKVAMF 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.43
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.13
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.13
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.08
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.08
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.03
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.01
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.93
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.89
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.88
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.83
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.82
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.82
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.82
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.78
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.78
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.75
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.74
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.74
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.73
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.73
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.73
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.72
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.71
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.69
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.69
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.68
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.65
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.64
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.63
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.63
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.62
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.61
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.58
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.56
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.56
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.55
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.54
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.52
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.51
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.48
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.47
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.42
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.4
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.4
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.38
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.38
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.38
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.38
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.37
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.36
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.29
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.25
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.21
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.2
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.17
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.1
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.09
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.09
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.09
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.09
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.08
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.07
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.05
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.04
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.01
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.01
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.99
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.99
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.98
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.97
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.96
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.96
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.9
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.89
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.84
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.82
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.81
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.77
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.68
d1gtea1	182	Dihydropyrimidine dehydrogenase, N-terminal domain	97.67
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.62
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.38
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.33
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.28
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.24
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.18
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.18
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.14
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.02
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.01
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.91
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.87
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.86
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.68
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.54
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.45
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.45
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.4
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.39
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.37
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.34
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.32
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	96.3
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.29
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.29
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.28
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	96.27
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.27
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.25
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.17
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.16
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.13
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.05
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.03
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.03
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.96
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.89
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.84
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.83
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.81
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.79
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.69
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.63
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.59
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.58
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.5
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.48
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.46
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.38
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.28
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.27
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.26
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.23
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.15
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.07
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.05
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	94.99
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.96
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.94
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.66
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.64
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.63
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.62
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.62
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.6
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.55
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.51
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.48
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.44
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.42
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.39
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.24
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.16
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.11
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	93.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.73
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.73
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	93.58
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.52
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.51
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.49
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.32
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.23
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.23
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.18
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.05
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.0
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	92.89
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.79
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.67
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.2
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.11
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.02
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.94
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	91.81
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.74
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.65
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.63
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	91.61
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.61
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	91.59
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.56
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	91.52
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.42
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	91.42
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.41
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.39
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	91.35
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.29
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.28
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.24
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.23
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	91.22
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.08
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.05
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.01
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.82
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	90.75
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.71
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.44
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.37
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.35
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	90.32
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	90.3
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.3
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	90.28
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.25
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.24
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.22
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.15
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.06
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.04
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.99
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.95
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.83
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.82
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	89.72
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.69
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.66
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	89.58
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.54
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.53
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	89.5
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	89.5
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	89.49
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.42
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	89.4
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	89.27
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	89.2
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	89.17
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.13
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	89.06
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	89.05
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	89.04
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	88.9
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	88.75
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	88.66
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.63
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.63
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.59
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.53
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	88.46
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	87.84
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	87.83
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	87.79
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.74
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.63
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.6
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.88
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	86.67
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	86.2
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	85.71
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	85.55
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	85.39
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	84.8
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.74
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	84.52
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.3
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.22
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	84.18
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	84.1
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.04
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	84.04
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	83.87
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	83.62
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	83.46
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	83.38
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	83.29
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	82.83
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.78
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	82.77
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	82.3
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	81.96
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	81.51
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	80.88
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	80.33

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=8.1e-14  Score=93.82  Aligned_cols=31  Identities=39%  Similarity=0.665  Sum_probs=29.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        59 ~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..++|+|||+|||||+||++|+++||+|+||
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~   72 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLF   72 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEE
Confidence            3589999999999999999999999999997

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.13  E-value=3.5e-11  Score=81.46  Aligned_cols=31  Identities=39%  Similarity=0.486  Sum_probs=29.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        59 ~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..++|+|||+||+|+++|..|+++|++|+||
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~   78 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLT   78 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeE
Confidence            3589999999999999999999999999986

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.13  E-value=2.9e-11  Score=81.30  Aligned_cols=30  Identities=43%  Similarity=0.711  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|++||+||++|+++|++|+||
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vl   59 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVL   59 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999986

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.1e-11  Score=78.34  Aligned_cols=30  Identities=40%  Similarity=0.662  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|++||+||+.|+++|++|+||
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~Vl   34 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLL   34 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            478999999999999999999999999996

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.08  E-value=4.2e-11  Score=78.35  Aligned_cols=29  Identities=41%  Similarity=0.692  Sum_probs=28.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      |||+|||+|++||+||++|+++|++|+||
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vl   30 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVF   30 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEE
Confidence            68999999999999999999999999986

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=1.3e-10  Score=74.12  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=28.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|++||.+|+++|++|+|+
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~G~~V~vl   34 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVDGKKVLHI   34 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            489999999999999999999999999986

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.93  E-value=3.2e-10  Score=74.33  Aligned_cols=30  Identities=37%  Similarity=0.560  Sum_probs=28.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++||+|||+|||||+||.+|+++|++|+|+
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G~~V~vi   32 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALI   32 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            599999999999999999999999999985

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.89  E-value=7.7e-10  Score=72.89  Aligned_cols=30  Identities=30%  Similarity=0.625  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++||++|++|+++|++|+||
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vi   35 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHIL   35 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEE
Confidence            479999999999999999999999999986

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=6.9e-10  Score=71.72  Aligned_cols=30  Identities=33%  Similarity=0.493  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ++||+||||||+||++|.+|+++|+ +|+||
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~   34 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIF   34 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEE
Confidence            3799999999999999999999999 48886

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=1e-09  Score=72.46  Aligned_cols=30  Identities=30%  Similarity=0.458  Sum_probs=28.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++||+|||+||||++||.+|++.|++|+|+
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~li   34 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACV   34 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.82  E-value=1.7e-09  Score=72.26  Aligned_cols=29  Identities=34%  Similarity=0.662  Sum_probs=28.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|+++|+.|+++|++|+|+
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~~V~li   31 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGANVLLL   31 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            89999999999999999999999999986

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.82  E-value=1.9e-09  Score=71.97  Aligned_cols=29  Identities=28%  Similarity=0.564  Sum_probs=28.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+||+|+++|..|+++|++|+||
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~   33 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVY   33 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            69999999999999999999999999986

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=7.2e-10  Score=73.33  Aligned_cols=29  Identities=28%  Similarity=0.439  Sum_probs=26.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC-------CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG-------HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G-------~~V~v~   89 (89)
                      ++|+|||+|||||+||++|+++|       ++|+||
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~   38 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDML   38 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEE
Confidence            79999999999999999999998       478886

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.78  E-value=2.2e-09  Score=70.57  Aligned_cols=30  Identities=30%  Similarity=0.449  Sum_probs=28.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+|+++|.+++++|++|+|+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vi   32 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCI   32 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999985

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.78  E-value=2.5e-09  Score=71.43  Aligned_cols=30  Identities=30%  Similarity=0.572  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+||+||.+|++.|++|+||
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~V~vi   35 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIV   35 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            389999999999999999999999999986

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=2.6e-09  Score=71.07  Aligned_cols=29  Identities=28%  Similarity=0.572  Sum_probs=28.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||+|++||.++++.|++|+|+
T Consensus         4 YDviVIG~GpaGl~aA~~aa~~G~kV~vi   32 (235)
T d1h6va1           4 FDLIIIGGGSGGLAAAKEAAKFDKKVMVL   32 (235)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGCCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            89999999999999999999999999986

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=3.5e-09  Score=67.93  Aligned_cols=29  Identities=31%  Similarity=0.444  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+||||||+|+.||.+++++|.+|+|+
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~ii   30 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLM   30 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence            79999999999999999999999999985

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.74  E-value=4.1e-09  Score=76.45  Aligned_cols=30  Identities=40%  Similarity=0.587  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHH------CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD------HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~------~G~~V~v~   89 (89)
                      .+||+||||||||++||+.|++      +|++|+|+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~Vlll   67 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLV   67 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEE
Confidence            4899999999999999999998      89999986

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3.4e-09  Score=69.87  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|+++|.++++.|++|+|+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~ii   31 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALI   31 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            489999999999999999999999999985

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.73  E-value=4.1e-09  Score=71.43  Aligned_cols=30  Identities=37%  Similarity=0.477  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++||+||+.|+++|++|+|+
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vl   33 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVF   33 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.73  E-value=4.3e-09  Score=71.00  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|++|+++|++|+|+
T Consensus         4 ~~DvvIIGaGi~Gls~A~~La~~G~~V~vl   33 (276)
T d1ryia1           4 HYEAVVIGGGIIGSAIAYYLAKENKNTALF   33 (276)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999986

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.72  E-value=4.4e-09  Score=74.34  Aligned_cols=30  Identities=37%  Similarity=0.690  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||||++||++|+.|+++|++|+||
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~vi   31 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHII   31 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEE
Confidence            379999999999999999999999999986

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=3e-09  Score=69.33  Aligned_cols=30  Identities=33%  Similarity=0.443  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+||+||.||.+|++.|.+|+|+
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~ii   34 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLI   34 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence            479999999999999999999999999985

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.69  E-value=6.5e-09  Score=70.49  Aligned_cols=30  Identities=33%  Similarity=0.665  Sum_probs=28.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|++|+++|++|+|+
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~G~~V~vi   32 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV   32 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999986

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=6.5e-09  Score=68.13  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+||||||+|+.||.+|+++|++|+|+
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vi   34 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLF   34 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            389999999999999999999999999885

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.68  E-value=7.7e-09  Score=67.71  Aligned_cols=29  Identities=24%  Similarity=0.509  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +|++|||+||+|++||.++++.|.+|+|+
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vI   32 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIV   32 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            79999999999999999999999999985

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.65  E-value=7.5e-09  Score=70.39  Aligned_cols=29  Identities=34%  Similarity=0.515  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|||+||+||++|..|+++|++|+||
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vl   31 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVIL   31 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            58999999999999999999999999986

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.64  E-value=1.3e-08  Score=67.52  Aligned_cols=29  Identities=38%  Similarity=0.682  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .||+|||+||+||++|..|+++|+ +|+||
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~   31 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLL   31 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEE
Confidence            699999999999999999999996 88875

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=9.3e-09  Score=71.88  Aligned_cols=29  Identities=38%  Similarity=0.527  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||||++|+++|..|+++|++|+|+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~ii   30 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVI   30 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEE
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEE
Confidence            58999999999999999999999999986

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.63  E-value=9.3e-09  Score=68.38  Aligned_cols=29  Identities=34%  Similarity=0.553  Sum_probs=26.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      -+|+|||+|||||+||.+|+++  |++|+||
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~   32 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIY   32 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEE
Confidence            3899999999999999999875  7899986

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.62  E-value=1.2e-08  Score=70.65  Aligned_cols=30  Identities=30%  Similarity=0.539  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|+|||+||++|+++|++|+|+
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~~V~li   34 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVL   34 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence            379999999999999999999999999985

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.6e-08  Score=66.41  Aligned_cols=30  Identities=20%  Similarity=0.431  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+||+|+++|.++++.|++|+|+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vI   32 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVV   32 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            389999999999999999999999999985

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.58  E-value=1.8e-08  Score=69.14  Aligned_cols=29  Identities=38%  Similarity=0.588  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      .||+|||+||+||++|+.|++ .|++|+||
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vl   63 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQVAII   63 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCeEEEE
Confidence            799999999999999999987 59999986

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.56  E-value=2.6e-08  Score=68.51  Aligned_cols=30  Identities=40%  Similarity=0.715  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|++|+++|+.|+++|++|+|+
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lv   45 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDSGAKVILI   45 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999985

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.56  E-value=2.7e-08  Score=68.90  Aligned_cols=29  Identities=41%  Similarity=0.591  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|||+||||+.||++++++|.+|.++
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G~ktlli   31 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKGVRVGLL   31 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            89999999999999999999999999875

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.55  E-value=2.4e-08  Score=68.51  Aligned_cols=30  Identities=37%  Similarity=0.420  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHH-----HCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELL-----DHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~-----~~G~~V~v~   89 (89)
                      .+||+||||||+||++|..|+     ++|++|+||
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vl   41 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRII   41 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEE
Confidence            489999999999999999997     579999986

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.54  E-value=2.6e-08  Score=68.96  Aligned_cols=30  Identities=37%  Similarity=0.573  Sum_probs=28.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|++|||+|++|+.+|..|+++|++|+|+
T Consensus         4 ~yDviIVGsG~aG~v~A~~La~~G~kVlvL   33 (379)
T d2f5va1           4 KYDVVIVGSGPIGCTYARELVGAGYKVAMF   33 (379)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccEEEECcCHHHHHHHHHHhhCCCeEEEE
Confidence            489999999999999999999999999986

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.52  E-value=2.4e-08  Score=66.00  Aligned_cols=30  Identities=27%  Similarity=0.433  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|++|||+||+|+.+|.++++.|.+|+|+
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~li   34 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLV   34 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            489999999999999999999999999985

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.51  E-value=4.8e-08  Score=64.24  Aligned_cols=29  Identities=24%  Similarity=0.358  Sum_probs=25.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .||++|||+||+|+++|.++++.|. .|+|
T Consensus         3 ~YDviIIG~GpaGl~aA~~aa~~g~k~V~i   32 (238)
T d1aoga1           3 IFDLVVIGAGSGGLEAAWNAATLYKKRVAV   32 (238)
T ss_dssp             SBSEEEECCSHHHHHHHHHHHHTSCCCEEE
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            4899999999999999999999987 4555

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.48  E-value=5e-08  Score=67.77  Aligned_cols=29  Identities=45%  Similarity=0.697  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .||+|||+|++|+++|+.|+++|++|+|+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~ll   52 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILL   52 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEE
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            69999999999999999999999999985

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.47  E-value=6.3e-08  Score=65.81  Aligned_cols=29  Identities=31%  Similarity=0.547  Sum_probs=27.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +|++|||+||+|+.||.++++.|++|.|+
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~li   30 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALV   30 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            79999999999999999999999999985

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.42  E-value=6.9e-08  Score=64.40  Aligned_cols=29  Identities=21%  Similarity=0.368  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .+|++|||+||||++||.++++.|. .|.|
T Consensus         3 ~YDvvVIG~GpAG~~aAi~aa~~g~k~V~v   32 (240)
T d1feca1           3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAV   32 (240)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEE
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            5999999999999999999999986 4665

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=7.8e-08  Score=66.90  Aligned_cols=30  Identities=33%  Similarity=0.490  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .+||+|||+||+||+||++|+++  |++|+||
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~   81 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCII   81 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEE
Confidence            37999999999999999999965  9999986

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.40  E-value=1e-07  Score=66.61  Aligned_cols=29  Identities=48%  Similarity=0.652  Sum_probs=26.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~   89 (89)
                      ++|+|||||++||++|..|+++|  ++|+||
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vf   35 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLF   35 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEE
Confidence            79999999999999999999877  589886

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.38  E-value=1.3e-07  Score=64.48  Aligned_cols=28  Identities=36%  Similarity=0.722  Sum_probs=26.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           62 KVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        62 ~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ||+|||+|.+|+++|++|+++|. +|+|+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~li   31 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVL   31 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEE
Confidence            89999999999999999999996 69885

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=9.1e-08  Score=67.04  Aligned_cols=30  Identities=33%  Similarity=0.628  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|+|||.||+.++++|.+|+|+
T Consensus         7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~ll   36 (330)
T d1neka2           7 EFDAVVIGAGGAGMRAALQISQSGQTCALL   36 (330)
T ss_dssp             EESCEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence            489999999999999999999999999885

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.38  E-value=1.1e-07  Score=66.25  Aligned_cols=30  Identities=30%  Similarity=0.596  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|++||+||+.|+++|.+|+|+
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vl   48 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILV   48 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            379999999999999999999999999985

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.38  E-value=1.7e-07  Score=65.86  Aligned_cols=30  Identities=30%  Similarity=0.602  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..||+|||+|++||.+|..|.++|++|+||
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~   36 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVI   36 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEE
Confidence            379999999999999999999999999986

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.37  E-value=1.6e-07  Score=65.97  Aligned_cols=31  Identities=23%  Similarity=0.486  Sum_probs=29.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        59 ~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ...|++|||+|++|+.+|..|+++|++|+|+
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvL   36 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIV   36 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            3589999999999999999999999999986

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.36  E-value=1.8e-07  Score=65.51  Aligned_cols=29  Identities=24%  Similarity=0.519  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      -+|+|||+|++|+.+|..|+++|++|+|+
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvL   31 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLML   31 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEE
Confidence            48999999999999999999999999986

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.29  E-value=2.9e-07  Score=63.89  Aligned_cols=30  Identities=33%  Similarity=0.525  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHH----CCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD----HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~----~G~~V~v~   89 (89)
                      ..||+|||+|++||+||+.|++    +|.+|+|+
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vi   54 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLV   54 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEE
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEE
Confidence            3799999999999999999986    79999985

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.25  E-value=6.5e-07  Score=60.68  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+|++|+.+|..+++.|.+|+++
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vv   71 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIV   71 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            589999999999999999999999999875

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=3.9e-07  Score=62.77  Aligned_cols=29  Identities=41%  Similarity=0.684  Sum_probs=26.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+||+|||+|+|||+||+.+++.| +|+|+
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~ll   35 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH-QVIVL   35 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS-CEEEE
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC-CEEEE
Confidence            389999999999999999999888 89875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.20  E-value=8.8e-07  Score=54.02  Aligned_cols=29  Identities=21%  Similarity=0.512  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlv   51 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTIL   51 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEE
Confidence            69999999999999999999999999985

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.1e-06  Score=53.86  Aligned_cols=29  Identities=28%  Similarity=0.429  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|++|+.+|..|++.|.+|+|+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlv   50 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLF   50 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEE
Confidence            69999999999999999999999999985

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.10  E-value=1.6e-06  Score=54.84  Aligned_cols=30  Identities=37%  Similarity=0.482  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|||+|++|+.+|..|++.|.+|+|+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            379999999999999999999999998763

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.09  E-value=1.4e-06  Score=53.14  Aligned_cols=29  Identities=17%  Similarity=0.484  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|++|+++
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlv   50 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVV   50 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEE
Confidence            69999999999999999999999999985

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.09  E-value=1.4e-06  Score=61.67  Aligned_cols=30  Identities=37%  Similarity=0.591  Sum_probs=28.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+|.+|+..|..|+++|++|+|+
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvL   31 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLL   31 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEE
Confidence            389999999999999999999999999985

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=8.6e-07  Score=59.25  Aligned_cols=29  Identities=28%  Similarity=0.452  Sum_probs=24.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC---ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH---EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~---~V~v~   89 (89)
                      .||+|||+||+|++||.++++.|.   +|+++
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~li   33 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVI   33 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEE
Confidence            489999999999999999988764   56653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.09  E-value=2.1e-06  Score=53.08  Aligned_cols=29  Identities=31%  Similarity=0.565  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|+.|+.+|..|++.|++|+++
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtli   59 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVI   59 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEE
Confidence            69999999999999999999999999985

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.08  E-value=2.2e-06  Score=52.99  Aligned_cols=29  Identities=28%  Similarity=0.494  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|++|+..|..|+++|++|+++
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli   59 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLV   59 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEE
Confidence            69999999999999999999999999985

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.07  E-value=1.6e-06  Score=53.38  Aligned_cols=29  Identities=38%  Similarity=0.531  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|++|+..|..|+++|++|+++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv   61 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLI   61 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEE
Confidence            69999999999999999999999999985

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.05  E-value=2.7e-06  Score=53.27  Aligned_cols=29  Identities=24%  Similarity=0.499  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|++|+..|..|+++|++|+++
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvi   64 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLL   64 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeee
Confidence            79999999999999999999999999985

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.04  E-value=1.8e-06  Score=53.64  Aligned_cols=30  Identities=33%  Similarity=0.413  Sum_probs=25.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      .+||+|||+|++|+.+|.+|.+.+.  +|+++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtli   33 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLI   33 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEE
Confidence            3799999999999999999999886  55653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.01  E-value=2.9e-06  Score=52.15  Aligned_cols=29  Identities=17%  Similarity=0.344  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|+.|+..|..|++.|.+|+++
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv   51 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIF   51 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceee
Confidence            69999999999999999999999999985

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=3.5e-06  Score=52.01  Aligned_cols=29  Identities=24%  Similarity=0.502  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+|+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii   52 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVV   52 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEE
Confidence            69999999999999999999999999985

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=4.1e-06  Score=49.36  Aligned_cols=30  Identities=33%  Similarity=0.459  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|.|.+|+++|.+|.++|.+|+++
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~   34 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVM   34 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEe
Confidence            479999999999999999999999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=3.9e-06  Score=51.83  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+|+
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii   49 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVM   49 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEE
Confidence            69999999999999999999999999985

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=2.2e-06  Score=59.71  Aligned_cols=29  Identities=34%  Similarity=0.551  Sum_probs=26.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~   89 (89)
                      .||+|||+|+|||.||+.++++  |.+|+|+
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~ll   36 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALI   36 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEE
Confidence            7999999999999999999987  6688875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.97  E-value=4.6e-06  Score=51.17  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv   51 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVL   51 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEE
Confidence            69999999999999999999999999985

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.96  E-value=4.3e-06  Score=53.14  Aligned_cols=29  Identities=31%  Similarity=0.352  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|..|+..|..|+++|++|++|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~   30 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAW   30 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEE
Confidence            69999999999999999999999999986

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.7e-06  Score=51.47  Aligned_cols=29  Identities=28%  Similarity=0.336  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv   51 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLM   51 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEE
Confidence            69999999999999999999999999985

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.90  E-value=4.2e-06  Score=52.47  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|+|+|..|...|.+|+++|++|+|+
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~   31 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVA   31 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            79999999999999999999999999985

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.89  E-value=4.6e-06  Score=59.75  Aligned_cols=30  Identities=33%  Similarity=0.578  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      .+|++|||+|.+|+..|..|++.| ++|+|+
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlL   54 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVI   54 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEE
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEE
Confidence            499999999999999999999998 799985

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.84  E-value=1.2e-05  Score=48.74  Aligned_cols=29  Identities=10%  Similarity=0.279  Sum_probs=27.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|++.|.+|+++
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i   51 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVML   51 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEe
Confidence            79999999999999999999999999875

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.82  E-value=5.1e-06  Score=53.06  Aligned_cols=28  Identities=39%  Similarity=0.559  Sum_probs=25.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+|+|||+|++|+.+|..|++.|.+|+|
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i   31 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLI   31 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEE
Confidence            5799999999999999999999988765

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.81  E-value=7e-06  Score=58.43  Aligned_cols=30  Identities=37%  Similarity=0.606  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~   89 (89)
                      .+|++|||+|.+|+..|..|++.+ ++|+|+
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvL   47 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVI   47 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEE
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEE
Confidence            489999999999999999999976 899985

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.77  E-value=8.3e-06  Score=50.22  Aligned_cols=29  Identities=31%  Similarity=0.471  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..+++.|.+|+|+
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi   54 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVV   54 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEE
Confidence            69999999999999999999999999985

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.68  E-value=9.5e-06  Score=57.30  Aligned_cols=29  Identities=28%  Similarity=0.502  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|++|||+|++|+..|..|+++ ++|+|+
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvL   54 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVL   54 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEE
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEE
Confidence            48999999999999999999987 999885

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.67  E-value=2.1e-06  Score=57.49  Aligned_cols=38  Identities=5%  Similarity=-0.191  Sum_probs=30.5

Q ss_pred             ccCCCCCCCcccccCCCc--chhhcccc----------chhhhhhhcccc
Q 046976            6 LLPATSVTGVKWSRVQVK--GPRFHVRA----------SLDTNVSDMSVN   43 (89)
Q Consensus         6 ~~~~~~~~~~~~~iC~~~--C~~~c~r~----------~l~~~~~~~~~~   43 (89)
                      .+.+|||+++||+|||+.  ||..|+|+          .|++|+.|....
T Consensus       115 i~~~NP~p~icGRVCP~~~~CE~~C~r~~~~~~pV~I~~LeRfa~D~~~~  164 (182)
T d1gtea1         115 IFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKA  164 (182)
T ss_dssp             HHHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHH
T ss_pred             HhccCchHHHHhccCCCcchHHHhCeecCCCCCCeeecHHHHHHHHHHHH
Confidence            456799999999999865  99999985          367788886554

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.62  E-value=2.5e-05  Score=48.43  Aligned_cols=29  Identities=24%  Similarity=0.417  Sum_probs=27.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++++|||+|..|+..|..+++.|.+|+++
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtiv   55 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVV   55 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEE
Confidence            69999999999999999999999999985

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.38  E-value=8.6e-05  Score=44.73  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=24.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHH---CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD---HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~---~G~~V~v~   89 (89)
                      ++++|||+|++|+..|..|++   .|.+|+++
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli   50 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLA   50 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CeEEEECCChHHHHHHHHhHhhccccccccee
Confidence            699999999999999987665   47888875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=7.1e-05  Score=46.95  Aligned_cols=30  Identities=23%  Similarity=0.560  Sum_probs=28.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|||||..|+.-|..|.+.|.+|+|+
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVv   42 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLV   42 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            489999999999999999999999999985

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.28  E-value=0.00014  Score=43.96  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=24.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHC---CCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDH---GHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~---G~~V~v~   89 (89)
                      ++++|||+|+.|+..|..|.+.   |.+|+++
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli   52 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLC   52 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEE
Confidence            6999999999999999877664   4568875

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00017  Score=47.36  Aligned_cols=29  Identities=38%  Similarity=0.611  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|.-|..-|+.++++|++|+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~   33 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLV   33 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence            69999999999999999999999999985

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00014  Score=47.80  Aligned_cols=29  Identities=24%  Similarity=0.415  Sum_probs=25.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCc--eEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHE--VLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~--V~v   88 (89)
                      .++++|||+|++|+.+|..|+++|+.  |++
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~l   34 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLI   34 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEE
Confidence            37899999999999999999998874  655

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.18  E-value=0.00015  Score=47.24  Aligned_cols=29  Identities=28%  Similarity=0.493  Sum_probs=27.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|||+|.-|..-|..++++|++|+++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~   33 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMK   33 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999985

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.14  E-value=0.00027  Score=42.39  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|..|..-|..|.+.|.+|+|+
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~   41 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVN   41 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            489999999999999999999999999885

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.02  E-value=0.00046  Score=42.91  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=25.8

Q ss_pred             ceEEEE--CCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAII--GAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~Iv--G~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..++|+  |+|..|+.+|..|+++|.+|+++
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv   70 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIV   70 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEE
Confidence            566665  99999999999999999999985

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00031  Score=43.46  Aligned_cols=29  Identities=34%  Similarity=0.523  Sum_probs=24.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHH----CCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLD----HGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~----~G~~V~v~   89 (89)
                      ++++|||+|++|+..|..|++    .|.+|+++
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i   70 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQL   70 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEe
Confidence            699999999999999988864    58888874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.91  E-value=0.00062  Score=44.56  Aligned_cols=30  Identities=30%  Similarity=0.462  Sum_probs=28.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|.+|+.|+..+.+.|-+|++|
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~   61 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIF   61 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEE
Confidence            479999999999999999999999999986

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.87  E-value=0.0003  Score=46.03  Aligned_cols=29  Identities=28%  Similarity=0.350  Sum_probs=27.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|+|+|.-|.+.|..|++.|++|+++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~   36 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVW   36 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            47999999999999999999999999874

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.86  E-value=0.00077  Score=42.74  Aligned_cols=28  Identities=32%  Similarity=0.446  Sum_probs=25.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHE-VLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~-V~v   88 (89)
                      ++|+|||||-+|+-+|.+|.+.|.+ |++
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~v   74 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFL   74 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeE
Confidence            6899999999999999999999975 555

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.81  E-value=0.00081  Score=44.52  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .-+|+|+|+|.+|+.|+..+.+.|-+|++|
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~   58 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMAT   58 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEE
Confidence            369999999999999999999999999886

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.00096  Score=41.30  Aligned_cols=29  Identities=28%  Similarity=0.319  Sum_probs=27.3

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIG-AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.||| .|.-|..-|..|.++||+|.++
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~   39 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISIL   39 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEec
Confidence            6999999 6999999999999999999885

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.54  E-value=0.0012  Score=39.08  Aligned_cols=29  Identities=10%  Similarity=0.114  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|||+|.+|.-.|..|++.+.+|++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~   60 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIY   60 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEE
Confidence            48999999999999999999998877654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0016  Score=39.82  Aligned_cols=30  Identities=40%  Similarity=0.508  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|-+.+..|.+|++...+|+++
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li   56 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLI   56 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEE
Confidence            379999999999999999999998899875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.45  E-value=0.0014  Score=41.36  Aligned_cols=30  Identities=30%  Similarity=0.566  Sum_probs=25.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      ++||.|||+|..|.+.|+.|+.+|.  ++.+|
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~   36 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIV   36 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEe
Confidence            4799999999999999999999985  55543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.40  E-value=0.0025  Score=39.74  Aligned_cols=29  Identities=28%  Similarity=0.364  Sum_probs=26.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|+|+|+.|+.++..+...|.+|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v   56 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCT   56 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEcccccchhhHhhHhhhccccccc
Confidence            58999999999999999999999988763

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0024  Score=40.50  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|-++.++++.|.+.|.+++|+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~   47 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTIT   47 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEec
Confidence            479999999999999999999999988764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.37  E-value=0.0041  Score=39.84  Aligned_cols=25  Identities=28%  Similarity=0.613  Sum_probs=23.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH   84 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~   84 (89)
                      +.||.|||+|..|.+.|+.|+.+|+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l   44 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSL   44 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC
Confidence            4799999999999999999999998

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.34  E-value=0.0029  Score=39.39  Aligned_cols=30  Identities=30%  Similarity=0.163  Sum_probs=26.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|+.|+.++..+...|.+|+++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~   57 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAI   57 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCcccee
Confidence            368999999999999999999999988753

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00093  Score=41.47  Aligned_cols=27  Identities=44%  Similarity=0.529  Sum_probs=24.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCce
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEV   86 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V   86 (89)
                      .++|+|||+|..|+-+|..+++.|.++
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            479999999999999999999999753

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0026  Score=39.54  Aligned_cols=30  Identities=20%  Similarity=0.532  Sum_probs=26.6

Q ss_pred             CceEEEECCCH-----------HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-----------AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-----------aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+||           ++..|+..|.+.|++++++
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~Ili   44 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMV   44 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEE
Confidence            47999999997           7889999999999998874

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0021  Score=39.35  Aligned_cols=30  Identities=33%  Similarity=0.540  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|-+.+-.|.+|++...+|+++
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li   59 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLL   59 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEE
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEE
Confidence            489999999999999999999988888875

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.29  E-value=0.0027  Score=40.09  Aligned_cols=29  Identities=24%  Similarity=0.629  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|-|||-|.-|...|..|.++||+|++|
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~   30 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVF   30 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEE
Confidence            68999999999999999999999999885

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.28  E-value=0.0021  Score=40.13  Aligned_cols=24  Identities=42%  Similarity=0.511  Sum_probs=22.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH   84 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~   84 (89)
                      ++|.|||+|..|.+.|+.|+.++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l   25 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKEL   25 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCc
Confidence            699999999999999999999886

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0026  Score=39.78  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=26.7

Q ss_pred             CceEEEECCCH-----------HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-----------AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-----------aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+||           ++..+...|.+.|++++++
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~ili   47 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINV   47 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEe
Confidence            48999999998           7889999999999998764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.27  E-value=0.0022  Score=40.56  Aligned_cols=29  Identities=31%  Similarity=0.416  Sum_probs=25.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ++||.|||+|..|.+.|+.|+..++ ++.+
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L   36 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVVL   36 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEEE
Confidence            5899999999999999999999886 5544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.25  E-value=0.0023  Score=41.56  Aligned_cols=30  Identities=37%  Similarity=0.643  Sum_probs=27.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++||+|+|+ |..|...+..|.++|++|+++
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l   33 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLL   33 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence            589999997 999999999999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0026  Score=39.93  Aligned_cols=30  Identities=30%  Similarity=0.330  Sum_probs=26.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ..+|+|+|+|+.|+.++..+...|.+|+++
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~   57 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVI   57 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCCcchhHHHHhhhcccccccc
Confidence            369999999999999999998999998763

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.16  E-value=0.0027  Score=41.76  Aligned_cols=30  Identities=27%  Similarity=0.493  Sum_probs=27.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.||+|+|| |..|...+..|.++|++|+++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~   33 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVL   33 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEE
Confidence            468999997 999999999999999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0043  Score=38.85  Aligned_cols=29  Identities=24%  Similarity=0.230  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+...|.++++
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~   59 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVA   59 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchh
Confidence            36999999999999999999999998875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.05  E-value=0.0029  Score=39.79  Aligned_cols=24  Identities=38%  Similarity=0.565  Sum_probs=22.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH   84 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~   84 (89)
                      +||.|||+|..|.+.|+.|..+|.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~   25 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV   25 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC
Confidence            699999999999999999999885

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0051  Score=38.52  Aligned_cols=28  Identities=36%  Similarity=0.462  Sum_probs=25.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..|+|+|+|+.|+.++..+...|. +|++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~   56 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVV   56 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEe
Confidence            589999999999999999999998 5654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.03  E-value=0.0044  Score=39.26  Aligned_cols=29  Identities=28%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|||-|.-|...|..|.++||+|.+|
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~   31 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAF   31 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEE
Confidence            58999999999999999999999999886

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.96  E-value=0.0034  Score=39.39  Aligned_cols=29  Identities=31%  Similarity=0.452  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.+||-|.-|..-|..|.++||+|.+|
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~   30 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVF   30 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEE
Confidence            47999999999999999999999999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.89  E-value=0.0048  Score=38.65  Aligned_cols=29  Identities=38%  Similarity=0.715  Sum_probs=25.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v   88 (89)
                      ..||.|||+|..|.+.|+.|+.+|+  ++.+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L   36 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVL   36 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEE
Confidence            4799999999999999999999887  4444

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.84  E-value=0.0048  Score=38.05  Aligned_cols=30  Identities=33%  Similarity=0.448  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||+|-+.+..|.+|++.-.+|+++
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li   63 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYII   63 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEE
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEE
Confidence            489999999999999999999988888875

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.83  E-value=0.0035  Score=39.92  Aligned_cols=29  Identities=21%  Similarity=0.533  Sum_probs=26.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|||+|-+|.-.|..+++.+.++++
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~   60 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFV   60 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccc
Confidence            48999999999999999999999887654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.81  E-value=0.0056  Score=38.69  Aligned_cols=28  Identities=32%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .+|+|+|+|+.|+.+...+...|. +|++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~   58 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIV   58 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEE
T ss_pred             CEEEEECCCccchhheecccccccccccc
Confidence            699999999999999999999997 5655

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.79  E-value=0.005  Score=38.01  Aligned_cols=28  Identities=29%  Similarity=0.182  Sum_probs=25.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+|+|.|+|+.|+.++..+...|.+|++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~   56 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVA   56 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEec
Confidence            6899999999999999999999998775

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.69  E-value=0.0072  Score=37.64  Aligned_cols=28  Identities=46%  Similarity=0.617  Sum_probs=24.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH--EVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v   88 (89)
                      .||.|||+|..|.+.|+.|..+++  ++.+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L   31 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVL   31 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence            589999999999999999999987  4544

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.63  E-value=0.0084  Score=37.49  Aligned_cols=24  Identities=38%  Similarity=0.544  Sum_probs=22.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH   84 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~   84 (89)
                      .||+|||+|..|.++|+.|..+|+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l   25 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI   25 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC
Confidence            489999999999999999999987

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.59  E-value=0.0075  Score=38.00  Aligned_cols=29  Identities=21%  Similarity=0.345  Sum_probs=25.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+...|.++++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~   57 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIII   57 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEE
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceee
Confidence            36899999999999999999999987654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.58  E-value=0.0067  Score=38.37  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=26.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      ++|+|+|+|-++.+.++.|.+.|. +++|+
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~   47 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIY   47 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence            799999999999999999999997 67764

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.014  Score=37.20  Aligned_cols=29  Identities=34%  Similarity=0.658  Sum_probs=24.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v   88 (89)
                      +.+|.|||+|..|.+.|+.|..+|+  ++.+
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL   49 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELAL   49 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence            3589999999999999999999987  4444

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.48  E-value=0.011  Score=37.23  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=22.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH   84 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~   84 (89)
                      +.||.|||+|..|.+.|+.|.+.+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l   27 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL   27 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            3699999999999999999998876

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.46  E-value=0.0089  Score=37.05  Aligned_cols=28  Identities=32%  Similarity=0.400  Sum_probs=24.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ++|.|||.|.-|.+-|..|.+.|+++.|
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I   29 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKI   29 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEE
Confidence            3699999999999999999999985443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.38  E-value=0.011  Score=37.49  Aligned_cols=29  Identities=21%  Similarity=0.291  Sum_probs=25.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+...|. +|++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~   57 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIG   57 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEE
T ss_pred             CCEEEEEcCCcchhhhhhhhhccccccccc
Confidence            3689999999999999999999997 5654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.28  E-value=0.015  Score=36.88  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=24.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVL   87 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~   87 (89)
                      ...|+|+|+|+.|+.++..+...|.+.+
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~V   56 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRI   56 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCcee
Confidence            3689999999999999999999998544

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.011  Score=37.56  Aligned_cols=29  Identities=38%  Similarity=0.639  Sum_probs=26.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+++
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~   33 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVL   33 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEE
Confidence            68999995 999999999999999999874

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.26  E-value=0.012  Score=39.98  Aligned_cols=30  Identities=33%  Similarity=0.386  Sum_probs=27.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +++|+|+|+ |..|...+..|.++||+|.++
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l   33 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQ   33 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEE
Confidence            589999986 999999999999999999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.011  Score=35.48  Aligned_cols=29  Identities=31%  Similarity=0.524  Sum_probs=27.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|.|+|+|.-|...|....+.|++|.++
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~   40 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAV   40 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEE
Confidence            69999999999999999999999999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.15  E-value=0.011  Score=37.27  Aligned_cols=30  Identities=37%  Similarity=0.564  Sum_probs=26.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .++|+|||+|..|...+..|..+|. +++|+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~   54 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVA   54 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEE
Confidence            4799999999999999999999998 57763

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.07  E-value=0.014  Score=39.70  Aligned_cols=30  Identities=37%  Similarity=0.526  Sum_probs=27.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.|| |..|...+..|.++|++|+++
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~   45 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIAS   45 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEE
Confidence            589999975 999999999999999999864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.05  E-value=0.015  Score=39.18  Aligned_cols=30  Identities=23%  Similarity=0.208  Sum_probs=26.7

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIG-AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|.| +|..|...+..|.++|++|.++
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~   38 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGY   38 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            38999998 4899999999999999998764

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.015  Score=39.20  Aligned_cols=30  Identities=30%  Similarity=0.605  Sum_probs=26.5

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +++|+|.|+ |..|...+..|.++|++|+.+
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~   31 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVV   31 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            379999976 889999999999999999863

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.96  E-value=0.021  Score=36.83  Aligned_cols=29  Identities=28%  Similarity=0.349  Sum_probs=24.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|+.|+.++..+...|. +|++
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~   55 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIV   55 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceee
Confidence            3699999999999999999888887 4443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.021  Score=34.96  Aligned_cols=29  Identities=21%  Similarity=0.391  Sum_probs=26.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      -.++|+|.|..|...+..|.++|++|+|+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vI   32 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVI   32 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            37999999999999999999999998874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.66  E-value=0.024  Score=36.09  Aligned_cols=30  Identities=33%  Similarity=0.492  Sum_probs=26.5

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|.|+ |-.|...|..|+++|.+|+++
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~   53 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLC   53 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhc
Confidence            489999994 778999999999999999863

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.013  Score=33.53  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=26.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|.|+|+|.-|...+....+.|++|.++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vl   30 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPV   30 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEE
Confidence            58999999999999999999999999875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.63  E-value=0.016  Score=36.60  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=24.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|-++.++++.|.+.| +++|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~   46 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIA   46 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeee
Confidence            479999999999999999998777 67664

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.015  Score=38.29  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=25.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ..+|+|+|+|-.|..+|..|++.|. ++++
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~l   59 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTL   59 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            3699999999999999999999998 4444

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.62  E-value=0.012  Score=34.35  Aligned_cols=29  Identities=38%  Similarity=0.449  Sum_probs=26.2

Q ss_pred             CceEEEECCCHHHHHH-HHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMST-AVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~a-A~~L~~~G~~V~v   88 (89)
                      .+++.+||-|=+|+++ |..|.++|++|+-
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsG   37 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISG   37 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEE
Confidence            4799999999999888 9999999999974

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.026  Score=35.77  Aligned_cols=29  Identities=24%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .++|+|+|+|-++.++++.|.+.|. +++|
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i   47 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKL   47 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEee
Confidence            3799999999999999999999997 4444

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.55  E-value=0.017  Score=36.63  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=26.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|+|+|-++.++++.|.+.+.+++|+
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~   47 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLA   47 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeec
Confidence            479999999999999999999988888774

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.51  E-value=0.00067  Score=44.60  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=27.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|+|..|+.+|..|++.|.+|+++
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli  209 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIP  209 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEE
Confidence            368999999999999999999999998764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.48  E-value=0.027  Score=36.96  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=27.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|-|-+|..+|.+|.+.|.+|++
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv   55 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLV   55 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            47999999999999999999999999876

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.028  Score=36.12  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=28.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.+.|+|-|..|...|..|+..|.+|+|+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~   53 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIIT   53 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEee
Confidence            479999999999999999999999999885

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.42  E-value=0.026  Score=35.58  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=23.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCce
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEV   86 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V   86 (89)
                      ...|+|+|+|+.|+.+...+...|...
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~   54 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASR   54 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCce
Confidence            368999999999999999999999743

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.39  E-value=0.024  Score=39.05  Aligned_cols=29  Identities=34%  Similarity=0.587  Sum_probs=26.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +||+|.|+ |..|...+..|.++||+|+++
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~i   31 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIV   31 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            68999976 889999999999999999863

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.24  E-value=0.037  Score=34.96  Aligned_cols=29  Identities=17%  Similarity=0.280  Sum_probs=25.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      ...|+|+|+|+.|+.+...+...|. +|++
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~   59 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIG   59 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEE
Confidence            3589999999999999999999996 5654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.16  E-value=0.03  Score=34.85  Aligned_cols=28  Identities=25%  Similarity=0.162  Sum_probs=23.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVL   87 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~   87 (89)
                      ...|+|+|+|+.|+.++..+...|..++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~v   60 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATV   60 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEE
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCccc
Confidence            3689999999999999999988886543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.11  E-value=0.033  Score=37.14  Aligned_cols=28  Identities=32%  Similarity=0.230  Sum_probs=25.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ++++|.|+ |..|...+.+|.++||+|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~   30 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHG   30 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEE
Confidence            67888876 99999999999999999975

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.027  Score=37.36  Aligned_cols=30  Identities=30%  Similarity=0.481  Sum_probs=26.5

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++||+|.|+ |..|-..+.+|.++|+.|+++
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~   32 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVL   32 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEe
Confidence            479999977 899999999999999988764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.05  Score=33.74  Aligned_cols=29  Identities=24%  Similarity=0.240  Sum_probs=25.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|.|+ |+.|+.+...+...|.+|++
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~   58 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILG   58 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEeccccccccccccccccCccccc
Confidence            368999996 99999999999999998875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.73  E-value=0.025  Score=34.05  Aligned_cols=23  Identities=35%  Similarity=0.549  Sum_probs=21.2

Q ss_pred             CCCHHHHHHHHHHHHCCCceEEc
Q 046976           67 GAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        67 G~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      |+|--|.+.|..|++.|++|++.
T Consensus         8 GaG~iG~alA~~la~~G~~V~l~   30 (212)
T d1jaya_           8 GTGNLGKGLALRLATLGHEIVVG   30 (212)
T ss_dssp             TTSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEE
Confidence            67999999999999999999874

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.58  E-value=0.052  Score=35.55  Aligned_cols=29  Identities=45%  Similarity=0.570  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|||-|.-|.+-|+-|.+.|.+|+|
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~V   44 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTV   44 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEE
Confidence            48999999999999999999999999986

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.52  E-value=0.027  Score=36.42  Aligned_cols=28  Identities=32%  Similarity=0.440  Sum_probs=25.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      +||+|.|| |..|-..+..|.++||+|+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~   30 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIP   30 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            68999998 99999999999999999875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.51  E-value=0.05  Score=33.50  Aligned_cols=29  Identities=17%  Similarity=0.256  Sum_probs=24.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ...|+|.|+|..|+.+...+...|.++++
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi   57 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRII   57 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEE
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceE
Confidence            36899999999999999999999976543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.49  E-value=0.071  Score=32.85  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=23.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVL   87 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~   87 (89)
                      ...|+|+|+|+.|+.++..++..|-..+
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~V   56 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRI   56 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchh
Confidence            3589999999999999999999887543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.32  E-value=0.039  Score=34.09  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=25.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+|+|.|+ |..|...+..|.++|++|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v   32 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVA   32 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEE
Confidence            59999985 99999999999999998765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.23  E-value=0.081  Score=32.73  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCCceE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGHEVL   87 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~   87 (89)
                      ..|+|+|+|..|+.++..++..|...+
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~V   56 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARI   56 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceE
Confidence            589999999999999999999987443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.23  E-value=0.046  Score=35.15  Aligned_cols=30  Identities=27%  Similarity=0.286  Sum_probs=27.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++++|+|-|..|...|..|...|.+|+|.
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~   52 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYIT   52 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEE
Confidence            489999999999999999999999999884

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.18  E-value=0.039  Score=37.33  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=25.1

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIG-AGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG-~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ++|+|.| +|..|...+..|.++|++|.|
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v   31 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHV   31 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEE
Confidence            6899998 599999999999999998765

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.064  Score=36.05  Aligned_cols=28  Identities=36%  Similarity=0.528  Sum_probs=25.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      +||+|.|| |..|...+..|.++|++|++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~   31 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVV   31 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence            68999976 89999999999999999976

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.00  E-value=0.067  Score=30.78  Aligned_cols=28  Identities=32%  Similarity=0.576  Sum_probs=24.3

Q ss_pred             ceEEEECCCHHHHHH-HHHHHHCCCceEE
Q 046976           61 LKVAIIGAGLAGMST-AVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~a-A~~L~~~G~~V~v   88 (89)
                      +||-+||-|=+|+++ |..|.++|++|.-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsG   30 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYG   30 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEE
Confidence            689999999999755 8999999999874

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=92.89  E-value=0.071  Score=36.03  Aligned_cols=29  Identities=31%  Similarity=0.403  Sum_probs=25.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|+ |..|...+..|.++|++|..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~   40 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRG   40 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEE
Confidence            489999976 88999999999999999864

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.79  E-value=0.019  Score=34.80  Aligned_cols=29  Identities=24%  Similarity=0.117  Sum_probs=21.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v   88 (89)
                      +++|+|+|+|-+|.+.+.++.+ .||+++-
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~   32 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRG   32 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEE
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEE
Confidence            4799999999999877766543 4666654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.67  E-value=0.083  Score=33.17  Aligned_cols=27  Identities=26%  Similarity=0.315  Sum_probs=24.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVL   87 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~   87 (89)
                      ++|+|.|| |..|.....+|.++|+.+.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~   30 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAK   30 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEE
Confidence            79999998 9999999999999998443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.20  E-value=0.083  Score=32.87  Aligned_cols=29  Identities=28%  Similarity=0.237  Sum_probs=25.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+|.|+ |+.|+.+...+...|.+|+.
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~   57 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLA   57 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEeccccchhhhhhhhccccccccc
Confidence            368999995 99999999999999998765

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.11  E-value=0.083  Score=34.38  Aligned_cols=29  Identities=14%  Similarity=0.046  Sum_probs=25.4

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|.|+.- .|.+.|..|+++|++|.+
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~   31 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVAS   31 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            47899998855 699999999999999875

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.02  E-value=0.095  Score=34.58  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=25.2

Q ss_pred             CceEEEECCC---HHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAG---LAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G---~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++   -.|.+.|..|+++|.+|++
T Consensus         8 gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi   39 (297)
T d1d7oa_           8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILV   39 (297)
T ss_dssp             TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEE
Confidence            4788999975   4899999999999999976

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.94  E-value=0.21  Score=33.06  Aligned_cols=30  Identities=17%  Similarity=0.128  Sum_probs=24.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+ +-.|.+.|..|+++|++|++.
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga~Vii~   55 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIA   55 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEE
Confidence            467777775 447999999999999999863

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=91.81  E-value=0.1  Score=34.86  Aligned_cols=29  Identities=38%  Similarity=0.322  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|-|.|-+|..+|.+|.+.|.+|+-
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~   59 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIA   59 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999998863

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.74  E-value=0.12  Score=34.59  Aligned_cols=29  Identities=24%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      ++|+|.|+ |..|...+..|.++|++|+.+
T Consensus        17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~   46 (341)
T d1sb8a_          17 KVWLITGVAGFIGSNLLETLLKLDQKVVGL   46 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCcCEEEEE
Confidence            68999976 999999999999999999763

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.65  E-value=0.27  Score=31.21  Aligned_cols=30  Identities=30%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|...|.+|.+|
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~   71 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGF   71 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEeccccccccceeeeeccccccccc
Confidence            579999999999999999999999999875

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.63  E-value=0.11  Score=33.93  Aligned_cols=29  Identities=31%  Similarity=0.445  Sum_probs=24.2

Q ss_pred             CceEEEECCC---HHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAG---LAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G---~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+.   =.|.+.|..|+++|++|.+
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i   39 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVAL   39 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEE
Confidence            4788888863   2799999999999999875

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.61  E-value=0.073  Score=32.92  Aligned_cols=25  Identities=28%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCC
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGH   84 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~   84 (89)
                      ..+|.|+|+ |..|.+.|+.|+..++
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            369999996 9999999999998764

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.61  E-value=0.11  Score=33.61  Aligned_cols=30  Identities=20%  Similarity=0.303  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|...|.+|..|
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~   72 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITY   72 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEecccccchhHHHhHhhhccccccc
Confidence            489999999999999999999999999764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=91.59  E-value=0.1  Score=34.19  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=25.2

Q ss_pred             CceEEEECC-C--HHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGA-G--LAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G--~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+ |  =.|.+.|..|+++|++|++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~   37 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFT   37 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEE
Confidence            478889985 3  37999999999999999863

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.11  Score=35.30  Aligned_cols=29  Identities=38%  Similarity=0.339  Sum_probs=25.3

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIG-AGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.|+|.| +|..|...+.+|.++|++|+++
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~   31 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGI   31 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEE
Confidence            5677888 6999999999999999999763

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=91.52  E-value=0.085  Score=34.86  Aligned_cols=29  Identities=14%  Similarity=0.291  Sum_probs=25.0

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .|.++|.|++- .|.+.|..|+++|++|.+
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i   38 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAV   38 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46788888876 699999999999999876

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.09  Score=34.85  Aligned_cols=29  Identities=31%  Similarity=0.381  Sum_probs=25.2

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+.- .|.+.|..|+++|++|.+
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~~Vil   43 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGAHVVV   43 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            47888888876 699999999999999876

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.42  E-value=0.11  Score=38.47  Aligned_cols=29  Identities=31%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+||+|+|-|..=...|..|++.|++|+-
T Consensus         6 e~DVII~GTGL~ESILAaAlSr~GkkVLH   34 (491)
T d1vg0a1           6 DFDVIVIGTGLPESIIAAACSRSGQRVLH   34 (491)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCEEEECCChHHHHHHHHHHhcCCEEEE
Confidence            38999999999998889999999999975

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.41  E-value=0.13  Score=31.42  Aligned_cols=28  Identities=11%  Similarity=0.107  Sum_probs=23.5

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHCCC-ceEE
Q 046976           61 LKVAIIG-AGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        61 ~~v~IvG-~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .+|+|+| +|+.|+.++..+...|. +|++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~   58 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIG   58 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CEEEEEeccccceeeeeecccccccccccc
Confidence            6899999 59999999998888886 5544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.39  E-value=0.12  Score=33.30  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|.|||.|..|...|..|...|.+|..|
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~   74 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAY   74 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceeeeeeecccccccccccccccceeeecc
Confidence            479999999999999999999999999865

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.35  E-value=0.12  Score=33.90  Aligned_cols=29  Identities=31%  Similarity=0.445  Sum_probs=25.0

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~   34 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVA   34 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            46888888865 699999999999999986

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.29  E-value=0.12  Score=33.65  Aligned_cols=29  Identities=14%  Similarity=0.216  Sum_probs=24.3

Q ss_pred             CceEEEECC-CH--HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGA-GL--AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~-G~--aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+ |-  .|.+.|..|+++|.+|.+
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil   37 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVL   37 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEE
Confidence            478889994 43  689999999999999875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.11  Score=33.69  Aligned_cols=29  Identities=14%  Similarity=0.257  Sum_probs=24.1

Q ss_pred             CceEEEECCCH---HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL---AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~---aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+.-   .|.+.|..|+++|++|.+
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i   36 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAF   36 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEE
Confidence            47888888754   678999999999999876

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.13  Score=33.29  Aligned_cols=29  Identities=31%  Similarity=0.484  Sum_probs=24.1

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~~V~~   34 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGASAVL   34 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            35667777766 699999999999999876

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.13  Score=33.79  Aligned_cols=29  Identities=31%  Similarity=0.402  Sum_probs=25.2

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~   36 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVA   36 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            47888888866 699999999999999986

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=91.22  E-value=0.15  Score=33.99  Aligned_cols=29  Identities=21%  Similarity=0.346  Sum_probs=27.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|-|-|-+|..+|.+|.+.|.+|++
T Consensus        39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~   67 (230)
T d1leha1          39 GLAVSVQGLGNVAKALCKKLNTEGAKLVV   67 (230)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEe
Confidence            48999999999999999999999998875

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.08  E-value=0.14  Score=33.35  Aligned_cols=29  Identities=28%  Similarity=0.310  Sum_probs=25.2

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|++.|++|.+
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~   33 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTI   33 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            47888998865 699999999999999976

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.05  E-value=0.055  Score=33.51  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=21.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCC
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGH   84 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~   84 (89)
                      ..||.|||+ |..|.+.|+.|+..+.
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~   28 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSV   28 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHh
Confidence            379999995 9999999999987643

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.01  E-value=0.14  Score=33.80  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i   34 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVV   34 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46788888865 699999999999999986

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.82  E-value=0.15  Score=33.80  Aligned_cols=29  Identities=24%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga~V~i   35 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGAKVVI   35 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            46777778765 699999999999999876

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=90.75  E-value=0.17  Score=33.45  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=25.3

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+.++|.|+.- .|...|..|+++|.+|+++
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~   35 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVI   35 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence            46788888865 6999999999999998763

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.15  Score=33.67  Aligned_cols=29  Identities=24%  Similarity=0.275  Sum_probs=24.5

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~   39 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVG   39 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            36778888766 599999999999999876

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.17  Score=33.26  Aligned_cols=29  Identities=31%  Similarity=0.297  Sum_probs=24.3

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+.- .|.+.|..|+++|.+|.+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i   32 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVAL   32 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            36777778765 699999999999999876

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.37  E-value=0.19  Score=34.77  Aligned_cols=29  Identities=21%  Similarity=0.287  Sum_probs=26.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|-|.|-+|..+|.+|.+.|.+|+-
T Consensus        36 gktvaIqGfGnVG~~~A~~L~e~Gakvv~   64 (293)
T d1hwxa1          36 DKTFAVQGFGNVGLHSMRYLHRFGAKCVA   64 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            47999999999999999999999998863

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.35  E-value=0.19  Score=32.40  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.8

Q ss_pred             CceEEEECCCHHHHHHHHHHH
Q 046976           60 KLKVAIIGAGLAGMSTAVELL   80 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~   80 (89)
                      .++|+|||+|-+++=+|..|+
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHH
T ss_pred             CceEEEECCCchhHhhhhhhc
Confidence            479999999999999998776

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=90.32  E-value=0.18  Score=32.48  Aligned_cols=30  Identities=30%  Similarity=0.447  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++.|||.|..|...|..|...|.+|..|
T Consensus        49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~   78 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAFGFNVLFY   78 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CceEEEeccccccccceeeeeccccceeec
Confidence            579999999999999999999999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.30  E-value=0.12  Score=33.35  Aligned_cols=29  Identities=28%  Similarity=0.200  Sum_probs=25.1

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|+|.|+.- .|.+.|..|+++|++|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~   32 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNI   32 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            5899998865 6999999999999998763

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.30  E-value=0.13  Score=33.99  Aligned_cols=29  Identities=21%  Similarity=0.252  Sum_probs=24.6

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~   34 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGARVAI   34 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46778888865 699999999999999976

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.28  E-value=0.18  Score=33.09  Aligned_cols=29  Identities=24%  Similarity=0.269  Sum_probs=24.6

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~~V~~   34 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGARLVA   34 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            36778888755 799999999999999886

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.25  E-value=0.18  Score=33.31  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=24.7

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|++.|++|.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~   34 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIAL   34 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46778888865 699999999999999876

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.11  Score=37.52  Aligned_cols=29  Identities=34%  Similarity=0.431  Sum_probs=25.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~   89 (89)
                      .+|+|||+|-.|...+..|++.|. +++|+
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lv   67 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVI   67 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            589999999999999999999998 66653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.22  E-value=0.18  Score=33.39  Aligned_cols=29  Identities=28%  Similarity=0.355  Sum_probs=25.1

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~   34 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGARVVL   34 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEE
Confidence            47888888876 699999999999999876

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.15  E-value=0.13  Score=32.79  Aligned_cols=28  Identities=21%  Similarity=0.340  Sum_probs=23.4

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      |.++|.|+.- .|.+.|..|+++|++|++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i   30 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVV   30 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            5677777744 699999999999999986

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.06  E-value=0.16  Score=33.73  Aligned_cols=29  Identities=28%  Similarity=0.397  Sum_probs=24.2

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~l   34 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGANVTI   34 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCCEEEE
Confidence            36777778765 699999999999999986

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.04  E-value=0.14  Score=33.78  Aligned_cols=28  Identities=21%  Similarity=0.421  Sum_probs=23.1

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      +.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~   33 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVL   33 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            5666667765 699999999999999976

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.24  Score=33.46  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=24.7

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|++.|++|.+
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga~Vvi   41 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGSNVVI   41 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46778888766 699999999999999886

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.95  E-value=0.14  Score=33.61  Aligned_cols=29  Identities=31%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|++
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~~Vvi   35 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGASVVV   35 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            36777777755 699999999999999976

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.83  E-value=0.2  Score=33.08  Aligned_cols=29  Identities=38%  Similarity=0.471  Sum_probs=24.6

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++. .|.+.|..|+++|++|.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~i   33 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGAKLSL   33 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            36777778876 699999999999999876

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.82  E-value=0.2  Score=33.16  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=25.1

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .|.++|.|+.- .|.+.|..|+++|++|.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i   35 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYT   35 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            47889998755 699999999999999886

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.72  E-value=0.2  Score=32.78  Aligned_cols=29  Identities=28%  Similarity=0.450  Sum_probs=24.9

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|++.|++|.+
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~   36 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAV   36 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46788888865 699999999999999986

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.69  E-value=0.21  Score=32.83  Aligned_cols=29  Identities=24%  Similarity=0.248  Sum_probs=24.3

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~~V~~   34 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGALVAL   34 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46778888755 699999999999999976

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.66  E-value=0.2  Score=32.18  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           63 VAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        63 v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      |+|.|++- .|++.|..|++.|++|.+
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~   30 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVG   30 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            45557644 799999999999999876

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=89.58  E-value=0.21  Score=33.18  Aligned_cols=29  Identities=21%  Similarity=0.264  Sum_probs=24.7

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~i   34 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGAKVAV   34 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            36788888754 699999999999999986

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.54  E-value=0.22  Score=33.34  Aligned_cols=29  Identities=31%  Similarity=0.559  Sum_probs=24.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      |-|+|.|+ |..|......|.++|++|+++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~   31 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVA   31 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEE
Confidence            45778866 899999999999999999863

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.53  E-value=0.21  Score=32.93  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=24.7

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga~V~~   37 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGASVYT   37 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46778888865 699999999999999876

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=89.50  E-value=0.17  Score=33.21  Aligned_cols=29  Identities=24%  Similarity=0.234  Sum_probs=23.7

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~   33 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIG   33 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            35666768765 699999999999999976

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=89.50  E-value=0.079  Score=32.17  Aligned_cols=27  Identities=19%  Similarity=0.084  Sum_probs=22.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+.+|+|...  -|.+|+++|++|+-
T Consensus        21 ~~rvLd~GCG~G~--~a~~la~~G~~V~g   47 (201)
T d1pjza_          21 GARVLVPLCGKSQ--DMSWLSGQGYHVVG   47 (201)
T ss_dssp             TCEEEETTTCCSH--HHHHHHHHCCEEEE
T ss_pred             CCEEEEecCcCCH--HHHHHHHcCCceEe
Confidence            3699999999864  55688899999874

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.49  E-value=0.16  Score=31.22  Aligned_cols=28  Identities=25%  Similarity=0.210  Sum_probs=24.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+|+|.|+ |..|+.+...+...|.+|++
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~   55 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGARIYT   55 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEEECCCCCcccccchhhcccccccee
Confidence            58888886 99999999999989998765

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.18  Score=33.09  Aligned_cols=29  Identities=17%  Similarity=0.289  Sum_probs=23.5

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~Vi~   35 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGAKVIA   35 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            35666666654 699999999999999986

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.40  E-value=0.22  Score=32.27  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHC
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDH   82 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~   82 (89)
                      .++|+|||+|-+++=+|..|.+.
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSC
T ss_pred             CceEEEECCchhHHHHHHHHhcC
Confidence            47999999999999999999873

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=89.27  E-value=0.71  Score=29.37  Aligned_cols=30  Identities=17%  Similarity=0.198  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++.|||.|..|...|..|...|.+|..+
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~   76 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYF   76 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             ccceEEeecccchHHHHHHHHhhccccccc
Confidence            589999999999999999999999988764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=89.20  E-value=0.24  Score=32.30  Aligned_cols=29  Identities=14%  Similarity=0.196  Sum_probs=25.0

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|...|..|+++|++|.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~~V~~   34 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGASLVA   34 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46788888876 699999999999999986

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.17  E-value=0.24  Score=32.56  Aligned_cols=29  Identities=17%  Similarity=0.287  Sum_probs=24.2

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~~   35 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGAKVVF   35 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46777778755 699999999999999876

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.13  E-value=0.22  Score=32.82  Aligned_cols=29  Identities=31%  Similarity=0.410  Sum_probs=23.9

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+.- .|.+.|..|+++|++|++
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi   47 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGCKVIV   47 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            46777777644 699999999999999976

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.06  E-value=0.18  Score=34.31  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|++
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi   36 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGALVVV   36 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            35677778876 599999999999999986

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=89.05  E-value=0.18  Score=34.09  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=26.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .++|+|-|.|-+|..+|.+|.+.|.+|+-
T Consensus        36 g~~v~IQGfGnVG~~~a~~L~e~Gakvva   64 (255)
T d1bgva1          36 GKTVALAGFGNVAWGAAKKLAELGAKAVT   64 (255)
T ss_dssp             TCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999998863

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.04  E-value=0.18  Score=33.36  Aligned_cols=29  Identities=17%  Similarity=0.204  Sum_probs=24.1

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|++.|++|.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~   37 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHT   37 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            36777777765 699999999999999876

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.26  Score=32.50  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=24.7

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i   35 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVI   35 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            46788888755 699999999999999976

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=88.75  E-value=0.19  Score=33.29  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=23.5

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~~Vv~   36 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKAKVVV   36 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            35666777654 699999999999999976

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.28  Score=32.27  Aligned_cols=30  Identities=33%  Similarity=0.310  Sum_probs=24.7

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+-++|.|++. .|...|..|+++|.+|.+.
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~   37 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLW   37 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence            35666778877 6999999999999999863

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.63  E-value=0.2  Score=33.34  Aligned_cols=29  Identities=31%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|++.|++|.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~~   33 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTI   33 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            36777777765 699999999999999986

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.52  Score=29.71  Aligned_cols=30  Identities=27%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++.|+|.|..|...|..|...|.+|..+
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~   73 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFY   73 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeec
Confidence            479999999999999999999999998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.59  E-value=0.18  Score=33.35  Aligned_cols=29  Identities=28%  Similarity=0.386  Sum_probs=23.9

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|++.|++|.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga~V~~   40 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGASVVV   40 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            36677777755 699999999999999986

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.53  E-value=0.29  Score=32.02  Aligned_cols=29  Identities=17%  Similarity=0.249  Sum_probs=24.3

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|++.|++|.+
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~   34 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAI   34 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            36777778765 699999999999999876

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.46  E-value=0.2  Score=32.89  Aligned_cols=29  Identities=28%  Similarity=0.256  Sum_probs=23.5

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      +-++|.|++- .|.+.|..|++.|++|.+.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga~V~~~   40 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVSHVICI   40 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSSEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEE
Confidence            5666768754 6999999999999998763

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.84  E-value=0.24  Score=32.59  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=23.6

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|++- .|.+.|..|+++|++|.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga~V~~   35 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGAKVAF   35 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            35667777655 699999999999999876

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.83  E-value=0.32  Score=31.83  Aligned_cols=25  Identities=32%  Similarity=0.574  Sum_probs=21.1

Q ss_pred             EEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           64 AIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        64 ~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      +|.|++- .|.+.|..|+++|++|.+
T Consensus         5 lITGas~GIG~aia~~la~~Ga~V~~   30 (255)
T d1gega_           5 LVTGAGQGIGKAIALRLVKDGFAVAI   30 (255)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEcCCccHHHHHHHHHHHHCCCEEEE
Confidence            5557765 699999999999999976

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=87.79  E-value=0.33  Score=30.72  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=26.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++.|||.|..|...|..|...|.+|..+
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~   73 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYT   73 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEE
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEE
Confidence            579999999999999999999889888653

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.74  E-value=0.25  Score=32.53  Aligned_cols=28  Identities=29%  Similarity=0.329  Sum_probs=22.6

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      +.++|.|++- .|.+.|..|+++|++|.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~   34 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTI   34 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEE
Confidence            5556667654 699999999999999876

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.60  E-value=0.26  Score=32.38  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .+.++|.|+.- .|.+.|..|++.|++|.+
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga~V~~   35 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGAKVMI   35 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            35666667655 699999999999999986

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.88  E-value=0.41  Score=31.27  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=22.2

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      |-++|.|+.. .|.+.|..|+++|++|.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i   31 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFV   31 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            3445667755 699999999999999876

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.67  E-value=0.65  Score=29.24  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=27.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+++.|+|.|..|...|..|...|.+|..+
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~   73 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAY   73 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEee
Confidence            579999999999999999999999888764

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=86.20  E-value=0.45  Score=31.10  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             CCCHHHHHHHHHHHHCCCceEEc
Q 046976           67 GAGLAGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        67 G~G~aGl~aA~~L~~~G~~V~v~   89 (89)
                      .+|--|.+.|..+.++|++|+++
T Consensus        30 SSGk~G~aiA~~~~~~Ga~V~li   52 (223)
T d1u7za_          30 SSGKMGFAIAAAAARRGANVTLV   52 (223)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcHHHHHHHHHHHHHcCCchhhh
Confidence            45999999999999999999985

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.47  Score=30.18  Aligned_cols=30  Identities=40%  Similarity=0.557  Sum_probs=25.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCCC--ceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHGH--EVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G~--~V~v~   89 (89)
                      +++|+|.|| |..|.....+|.++|.  +|+++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~   46 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLI   46 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEE
Confidence            368999987 9999999999999985  67653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.55  E-value=0.34  Score=35.61  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=25.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH-EVLL   88 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v   88 (89)
                      .+|+|||+|..|...|..|+..|. +++|
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~iti   54 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTI   54 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEE
Confidence            699999999999999999999997 5665

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=85.39  E-value=0.53  Score=30.45  Aligned_cols=26  Identities=42%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             EEEE-CCC-HHHHHHHHHHHHCCCceEE
Q 046976           63 VAII-GAG-LAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        63 v~Iv-G~G-~aGl~aA~~L~~~G~~V~v   88 (89)
                      |+|| |++ -.|.+.|..|+++|++|.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i   31 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCL   31 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            5555 664 4799999999999999976

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.80  E-value=0.44  Score=31.75  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             ceEEEE-CCCH-HHHHHHHHHHHCCCceEE
Q 046976           61 LKVAII-GAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~Iv-G~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      ++|++| |+.- .|.+.|..|++.|.+|.+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~   31 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFK   31 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEE
Confidence            467766 6654 589999999999988653

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.74  E-value=0.7  Score=31.16  Aligned_cols=30  Identities=27%  Similarity=0.547  Sum_probs=24.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHH-CCCceEEc
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLD-HGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~-~G~~V~v~   89 (89)
                      .++|+|.|+ |..|...+..|.+ .|++|+++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~   33 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIV   33 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEE
Confidence            379999976 8899998888864 79998863

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=84.52  E-value=0.52  Score=29.76  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHCC
Q 046976           60 KLKVAIIGA-GLAGMSTAVELLDHG   83 (89)
Q Consensus        60 ~~~v~IvG~-G~aGl~aA~~L~~~G   83 (89)
                      ..+|.|+|+ |..|.+.++.|++..
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~   48 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGE   48 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCc
Confidence            368999996 999999999999853

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.30  E-value=0.51  Score=29.97  Aligned_cols=29  Identities=24%  Similarity=0.231  Sum_probs=25.1

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      .++++|||-+. .|...|..|.++|..|++
T Consensus        29 GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~   58 (171)
T d1edza1          29 GKKCIVINRSEIVGRPLAALLANDGATVYS   58 (171)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEE
T ss_pred             CCEEEEECCccccHHHHHHHHHHCCCEEEE
Confidence            58999999664 799999999999987765

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=84.22  E-value=0.54  Score=29.87  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=26.8

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||.+. .|...|..|.++|..|++.
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~   67 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVT   67 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEE
T ss_pred             cceEEEEeccccccHHHHHHHHHhhcccccc
Confidence            48999999887 7999999999999999863

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.18  E-value=0.72  Score=30.56  Aligned_cols=28  Identities=32%  Similarity=0.371  Sum_probs=24.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVL   87 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~   87 (89)
                      .++|+|-|.|-+|..+|.+|.+ .|.+|+
T Consensus        32 g~~v~IqGfGnVG~~~a~~L~~~~G~kvv   60 (239)
T d1gtma1          32 GKTIAIQGYGNAGYYLAKIMSEDFGMKVV   60 (239)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCccee
Confidence            4799999999999999999986 587775

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.10  E-value=0.62  Score=28.29  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCC
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGH   84 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~   84 (89)
                      .+|+|||+ |.+|......|.+++|
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~h   27 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDF   27 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCC
Confidence            79999998 9999999999987765

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.04  E-value=0.64  Score=29.51  Aligned_cols=30  Identities=17%  Similarity=0.119  Sum_probs=26.6

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976           60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~   89 (89)
                      .++|+|||.+. .|...|..|.++|..|+++
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~   69 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTC   69 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEE
T ss_pred             cceEEEEecCCccchHHHHHHHhccCceEEE
Confidence            48999999876 7999999999999988874

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.04  E-value=0.59  Score=30.87  Aligned_cols=29  Identities=31%  Similarity=0.383  Sum_probs=25.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-CCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v   88 (89)
                      .++|+|-|.|-+|..+|.+|.+ .|.+|+.
T Consensus        31 g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~   60 (234)
T d1b26a1          31 KATVAVQGFGNVGQFAALLISQELGSKVVA   60 (234)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHHCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCceEE
Confidence            4799999999999999999975 5887763

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=83.87  E-value=0.76  Score=28.01  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCC
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGH   84 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~   84 (89)
                      ++|+|||+ |.+|...-..|.++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~f   26 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTL   26 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCC
Confidence            79999998 9999999888887754

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=83.62  E-value=0.81  Score=27.52  Aligned_cols=29  Identities=24%  Similarity=0.309  Sum_probs=24.5

Q ss_pred             ceEEEECCCH----HHHHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGL----AGMSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~----aGl~aA~~L~~~G~~V~v~   89 (89)
                      +.|+|||+..    .|-....+|.+.||++.++
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v   46 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPV   46 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCCCceEE
Confidence            6899999844    7888899999999988654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.46  E-value=0.46  Score=30.75  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=21.7

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHCCCceE
Q 046976           61 LKVAIIGAGL-AGMSTAVELLDHGHEVL   87 (89)
Q Consensus        61 ~~v~IvG~G~-aGl~aA~~L~~~G~~V~   87 (89)
                      +.|+|.|+.- .|++.|..|+++|..+.
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~   31 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRH   31 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCE
Confidence            6788888866 59999999999997543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.38  E-value=0.69  Score=30.43  Aligned_cols=26  Identities=38%  Similarity=0.358  Sum_probs=22.3

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           63 VAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        63 v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ++|.|| |..|.....+|.++||+|+.
T Consensus         4 ~LVTG~tGfIG~~l~~~Ll~~g~~V~~   30 (347)
T d1t2aa_           4 ALITGITGQDGSYLAEFLLEKGYEVHG   30 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEecCCcHHHHHHHHHHHHCcCEEEE
Confidence            367765 89999999999999999875

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.29  E-value=0.66  Score=30.70  Aligned_cols=24  Identities=42%  Similarity=0.542  Sum_probs=22.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCCC
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHGH   84 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G~   84 (89)
                      .+|++.|+|.+|+..|..+.+.+.
T Consensus        27 ~riv~~GAGsAg~gia~~l~~~~~   50 (222)
T d1vl6a1          27 VKVVVNGIGAAGYNIVKFLLDLGV   50 (222)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             cEEEEEChHHHHHHHHHHHHHhcc
Confidence            699999999999999999988876

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=82.83  E-value=0.79  Score=25.33  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      .+|+|.|+ |-+|..+...+...|++|+.
T Consensus        33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~   61 (77)
T d1o8ca2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVA   61 (77)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHcCCeEEE
Confidence            57888876 88899999999999999875

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.78  E-value=0.58  Score=28.45  Aligned_cols=28  Identities=14%  Similarity=0.076  Sum_probs=22.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..|+|.|+ |..|+.+...+...|.+|++
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~   58 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGAKLIG   58 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEEEccccccchHHHHHHHHhCCeEee
Confidence            68899955 55899998888888998875

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=82.77  E-value=0.77  Score=30.64  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=21.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHCC
Q 046976           61 LKVAIIGAGLAGMSTAVELLDHG   83 (89)
Q Consensus        61 ~~v~IvG~G~aGl~aA~~L~~~G   83 (89)
                      ++|+|||-|.-|.+-|+-|.+.|
T Consensus        45 KkIaViGYGsQG~AhAlNLrDSG   67 (226)
T d1qmga2          45 KQIGVIGWGSQAPAQAQNLKDSL   67 (226)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEeccHHHHHHHhChhhc
Confidence            79999999999999999999954

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=82.30  E-value=0.73  Score=29.64  Aligned_cols=28  Identities=32%  Similarity=0.275  Sum_probs=22.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976           61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..++|.|+ |-.|...|..|+++|.++++
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vv   38 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGAPHLL   38 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTCSEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEE
Confidence            58889886 44799999999999996433

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=81.96  E-value=0.33  Score=31.44  Aligned_cols=29  Identities=28%  Similarity=0.442  Sum_probs=21.5

Q ss_pred             ceEEEECCCHHH-----HHHHHHHHHCCCceEEc
Q 046976           61 LKVAIIGAGLAG-----MSTAVELLDHGHEVLLI   89 (89)
Q Consensus        61 ~~v~IvG~G~aG-----l~aA~~L~~~G~~V~v~   89 (89)
                      +.|+|.|-|=+|     ...|+.|+++|++|.++
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllI   35 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV   35 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            467788855544     44578899999999875

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.51  E-value=0.57  Score=30.52  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=22.0

Q ss_pred             eEEEECCCH-HHHHHHHHHHHCCCceEE
Q 046976           62 KVAIIGAGL-AGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        62 ~v~IvG~G~-aGl~aA~~L~~~G~~V~v   88 (89)
                      -++|.|++- .|.+.|..|+++|++|.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i   30 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLV   30 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            356667655 699999999999999975

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.88  E-value=0.79  Score=29.96  Aligned_cols=29  Identities=24%  Similarity=0.467  Sum_probs=21.9

Q ss_pred             CceEEEE-CCCH-HHHHHHHHHHHC-CCceEE
Q 046976           60 KLKVAII-GAGL-AGMSTAVELLDH-GHEVLL   88 (89)
Q Consensus        60 ~~~v~Iv-G~G~-aGl~aA~~L~~~-G~~V~v   88 (89)
                      .++|+|| |+.- .|+..|..|+++ |.+|++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~   33 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVL   33 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            3789877 4433 589999999986 888876

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.33  E-value=0.39  Score=30.62  Aligned_cols=27  Identities=30%  Similarity=0.249  Sum_probs=21.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976           60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL   88 (89)
Q Consensus        60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v   88 (89)
                      ..+|+.+|+|..  ..+.+|+++|++|+=
T Consensus        46 ~~rvLd~GCG~G--~~a~~LA~~G~~V~g   72 (229)
T d2bzga1          46 GLRVFFPLCGKA--VEMKWFADRGHSVVG   72 (229)
T ss_dssp             SCEEEETTCTTC--THHHHHHHTTCEEEE
T ss_pred             CCEEEEeCCCCc--HHHHHHHhCCCcEEE
Confidence            469999999974  347788999999873