Citrus Sinensis ID: 047021

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
WLLSQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLEKELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQELEEKLVMFSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQNEELRGILEKLRTEQASFMSVNDKDILRDFSEPSKDAVSQNGSETHKNEFLALKGQLAKEQSRAEALSAQVLQLSAQLQQTTQAYNGLVRLYKPVLRNIESSLIKMKQDGSVTVQ
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcc
WLLSQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQamdgslggissmgispdHVQTLEKELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQELEEKLVMFSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQNEELRGILEKLRTEQAsfmsvndkdilrdfsepskdavsqngsethkNEFLALKGQLAKEQSRAEALSAQVLQLSAQLQQTTQAYNGLVRLYKPVLRNIESSLIKMkqdgsvtvq
wllsqlkdfqkknaeleeknsilssklqvKEVESESLQtrineleqntvpsLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLEKELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQELEEKLVMFSRKASEEvsnaaaskafsvedkEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQNEELRGILEKLRTEQASFMSVNDKDILRDFSEPSKDavsqngsethKNEFLALKGQLAKEQSRAEALSAQVLQLSAQLQQTTQAYNGLVRLYKPVLRNIEsslikmkqdgsvtvq
WLLSQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLKeaeeeqyraeedaaalraelNSLQQQAMDgslggissmgisPDHVQTLEKELATlksqlqqesqlrqqerkqlTEEQARISVLMSEKQELEEKLVMFSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFeensslsssyqesMGIAKHWENQVKDCLKQNEELRGILEKLRTEQASFMSVNDKDILRDFSEPSKDAVSQNGSETHKNEFLALKGQLAKEQSRAEalsaqvlqlsaqlqqttqaYNGLVRLYKPVLRNIESSLIKMKQDGSVTVQ
********************************************************************************************************************************************************************************************************************************************************************KHWENQVKDCLK****LRGIL**************************************************************VLQLSAQLQQTTQAYNGLVRLYKPVLRNIES**************
WL*SQL**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
WLLSQLKDFQKKNAELEEKNSILSSKL***********TRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLK**********EDAAALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLEKELATLKSQ*****************EQARISVLMSEKQELEEKLVMFS****************SVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERL**************MGIAKHWENQVKDCLKQNEELRGILEKLRTEQASFMSVNDKDILRDFSE************THKNEFLALKG************SAQVLQLSAQLQQTTQAYNGLVRLYKPVLRNIESSLIKM*********
WLLSQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLEKELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQELEEKLVMFSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQNEELRGILEKLRTEQASFMSVNDKDILRDFSEPSKDAVSQNGSETHKNEFLALKGQLAKEQSRAEALSAQVLQLSAQLQQTTQAYNGLVRLYKPVLRNIESSLIKMKQDG*****
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WLLSQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTVPSLRKALKDVAMEKDAAVVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAMDGSLGGISSMGISPDHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxASEEVSNAAASKAFSVEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNSSLSSSYQESMGIAKHWENQxxxxxxxxxxxxxxxxxxxxxQASFMSVNDKDILRDFSEPSKDAVSQNGSETHKNEFLALKGQxxxxxxxxxxxxxxxxxxxxxxxxxxxxYNGLVRLYKPVLRNIESSLIKMKQDGSVTVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
255558958450 conserved hypothetical protein [Ricinus 0.994 0.857 0.727 1e-154
225434806447 PREDICTED: uncharacterized protein LOC10 0.992 0.861 0.720 1e-151
224059434446 predicted protein [Populus trichocarpa] 0.981 0.854 0.725 1e-147
297793451436 hypothetical protein ARALYDRAFT_919132 [ 0.958 0.853 0.722 1e-146
30697185434 myosin heavy chain-related protein [Arab 0.953 0.852 0.720 1e-145
30697188433 myosin heavy chain-related protein [Arab 0.951 0.852 0.717 1e-144
9759242463 unnamed protein product [Arabidopsis tha 0.953 0.799 0.720 1e-144
449450766437 PREDICTED: uncharacterized protein LOC10 0.966 0.858 0.689 1e-139
357454255438 hypothetical protein MTR_2g097780 [Medic 0.966 0.856 0.656 1e-133
356557789433 PREDICTED: uncharacterized protein LOC10 0.951 0.852 0.655 1e-132
>gi|255558958|ref|XP_002520502.1| conserved hypothetical protein [Ricinus communis] gi|223540344|gb|EEF41915.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/386 (72%), Positives = 331/386 (85%)

Query: 2   LLSQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAM 61
           L+SQLKD QKKNA+LEE N +LS K+Q K+VE++SL  R+N+LEQNTVPSLRKALKDVAM
Sbjct: 64  LVSQLKDLQKKNADLEESNKMLSMKIQTKDVENDSLVKRLNDLEQNTVPSLRKALKDVAM 123

Query: 62  EKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGIS 121
           EKDAAVVAREDLS QLRTLKKRLKEAEEEQYRAEEDAA+LRAELNS+QQQAM   LGGI+
Sbjct: 124 EKDAAVVAREDLSTQLRTLKKRLKEAEEEQYRAEEDAASLRAELNSIQQQAMSNPLGGIT 183

Query: 122 SMGISPDHVQTLEKELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQELEEKLVM 181
           S+GISPD VQ+LEKELA+LKS LQQES LRQQE+ +L +E A  S LMSEKQELEEKL  
Sbjct: 184 SIGISPDQVQSLEKELASLKSNLQQESSLRQQEQHRLAQELAWASTLMSEKQELEEKLAA 243

Query: 182 FSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIER 241
            S++A EEVS     K FSVE+KEKLEKQLHD+AV VERLESSRQKLL EID+QSSEIE+
Sbjct: 244 ISKRAPEEVSEKVFHKGFSVEEKEKLEKQLHDLAVAVERLESSRQKLLEEIDSQSSEIEK 303

Query: 242 LFEENSSLSSSYQESMGIAKHWENQVKDCLKQNEELRGILEKLRTEQASFMSVNDKDILR 301
           LFEENS+LSSSYQE++ I K WENQ+KDCLKQNEELRG+L K+R EQ + +S + +++LR
Sbjct: 304 LFEENSNLSSSYQEAVSIGKQWENQLKDCLKQNEELRGVLVKMRMEQTNMLSSSGRELLR 363

Query: 302 DFSEPSKDAVSQNGSETHKNEFLALKGQLAKEQSRAEALSAQVLQLSAQLQQTTQAYNGL 361
             +E   + V++ GS+ +  E L+L+G+LAKEQ+RAEALSA+VLQLSA+LQ+ TQAYNGL
Sbjct: 364 KPTESYSNGVNETGSQAYTTEVLSLRGELAKEQNRAEALSAEVLQLSAKLQEATQAYNGL 423

Query: 362 VRLYKPVLRNIESSLIKMKQDGSVTV 387
            RLYKPVLRNIE+SLIKMKQDG VTV
Sbjct: 424 ARLYKPVLRNIENSLIKMKQDGPVTV 449

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225434806|ref|XP_002282726.1| PREDICTED: uncharacterized protein LOC100243231 [Vitis vinifera] gi|297745999|emb|CBI16055.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224059434|ref|XP_002299845.1| predicted protein [Populus trichocarpa] gi|222847103|gb|EEE84650.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297793451|ref|XP_002864610.1| hypothetical protein ARALYDRAFT_919132 [Arabidopsis lyrata subsp. lyrata] gi|297310445|gb|EFH40869.1| hypothetical protein ARALYDRAFT_919132 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30697185|ref|NP_851219.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|19310501|gb|AAL84984.1| AT5g59210/mnc17_100 [Arabidopsis thaliana] gi|21360403|gb|AAM47317.1| AT5g59210/mnc17_100 [Arabidopsis thaliana] gi|332009774|gb|AED97157.1| myosin heavy chain-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30697188|ref|NP_200729.3| myosin heavy chain-related protein [Arabidopsis thaliana] gi|332009775|gb|AED97158.1| myosin heavy chain-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9759242|dbj|BAB09766.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449450766|ref|XP_004143133.1| PREDICTED: uncharacterized protein LOC101206865 [Cucumis sativus] gi|449520385|ref|XP_004167214.1| PREDICTED: uncharacterized LOC101206865 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357454255|ref|XP_003597408.1| hypothetical protein MTR_2g097780 [Medicago truncatula] gi|87241290|gb|ABD33148.1| t-snare [Medicago truncatula] gi|355486456|gb|AES67659.1| hypothetical protein MTR_2g097780 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356557789|ref|XP_003547193.1| PREDICTED: uncharacterized protein LOC100802307 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
TAIR|locus:2168439434 AT5G59210 "AT5G59210" [Arabido 0.953 0.852 0.551 1.4e-94
MGI|MGI:1339713 1939 Myh4 "myosin, heavy polypeptid 0.409 0.082 0.251 2.3e-05
UNIPROTKB|F1NPC4405 LOC429272 "Uncharacterized pro 0.420 0.402 0.229 7.5e-05
UNIPROTKB|F1LSI0 1926 Myh4 "Myosin-4" [Rattus norveg 0.409 0.082 0.245 8e-05
RGD|3139 1939 Myh4 "myosin, heavy chain 4, s 0.409 0.082 0.245 8.1e-05
UNIPROTKB|F1LMU0 1939 Myh4 "Myosin-4" [Rattus norveg 0.409 0.082 0.245 8.1e-05
MGI|MGI:1339712 1937 Myh8 "myosin, heavy polypeptid 0.414 0.083 0.259 0.00021
UNIPROTKB|E1BP87 1939 MYH4 "Uncharacterized protein" 0.409 0.082 0.234 0.00022
UNIPROTKB|Q9BE40 1938 MYH1 "Myosin-1" [Bos taurus (t 0.399 0.079 0.235 0.00029
UNIPROTKB|Q9TV62 1937 MYH4 "Myosin-4" [Sus scrofa (t 0.409 0.082 0.234 0.00029
TAIR|locus:2168439 AT5G59210 "AT5G59210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
 Identities = 213/386 (55%), Positives = 248/386 (64%)

Query:     2 LLSQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAM 61
             L SQLK+ QKKNAE+EE+N ILSSKLQ KEVE+ESL+TR+N LEQNTVPSLRKALK++AM
Sbjct:    63 LYSQLKELQKKNAEMEERNKILSSKLQTKEVENESLETRLNVLEQNTVPSLRKALKEIAM 122

Query:    62 EKDAAVVAREDLSAQLRTLKKRLKXXXXXXXXXXXXXXXXXXXXNSLQQQAMDXXXXXXX 121
             EKDAAVV REDLSAQ+RTLK+R+                     NS+QQQAM        
Sbjct:   123 EKDAAVVLREDLSAQVRTLKRRVNQAEEEQYRAEEDAASLRAELNSIQQQAMGNSFAGMS 182

Query:   122 XXXXXPDHVQTLEKELATXXXXXXXXXXXXXXXXXXXTEEQARISVLMSEKQELEEKLVM 181
                  PD +  LEKE+A                     EEQ R++ LMSEKQELE+K+ +
Sbjct:   183 PMGVSPDQLPILEKEMANLKLELQKESVLRQQEQHRLAEEQTRVASLMSEKQELEQKISV 242

Query:   182 FSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIER 241
              S +ASE VS +   K FSVEDKEKLEKQLHDMAV +ERLESSRQKLLMEIDNQSSEIE+
Sbjct:   243 LSSRASE-VSESG-QKVFSVEDKEKLEKQLHDMAVALERLESSRQKLLMEIDNQSSEIEK 300

Query:   242 LFXXXXXXXXXXXXXMGIAKHWENQVKDCLKQNEELRGILEKLRTEQASFMSVNDKDILR 301
             LF             + I+  WENQVK+CLKQN ELR +L+KLRTEQA   S        
Sbjct:   301 LFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQAGSFSRG------ 354

Query:   302 DFSEPSKDAVSQNGSETHKNEFLALKGQLAKEQSRAEXXXXXXXXXXXXXXXXXXXYNGL 361
                 PS+     NGS  H  + L+LKG+LAKEQSRAE                   YNGL
Sbjct:   355 ----PSE--FEANGS--HGTDTLSLKGELAKEQSRAESLSAQVLQLSAQLQQATQAYNGL 406

Query:   362 VRLYKPVLRNIESSLIKMKQDGSVTV 387
             +R+YKPVLRNIESSLIK+KQDGSVTV
Sbjct:   407 MRIYKPVLRNIESSLIKLKQDGSVTV 432
GO:0008150 "biological_process" evidence=ND
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
MGI|MGI:1339713 Myh4 "myosin, heavy polypeptide 4, skeletal muscle" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPC4 LOC429272 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1LSI0 Myh4 "Myosin-4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|3139 Myh4 "myosin, heavy chain 4, skeletal muscle" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMU0 Myh4 "Myosin-4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1339712 Myh8 "myosin, heavy polypeptide 8, skeletal muscle, perinatal" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BP87 MYH4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BE40 MYH1 "Myosin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TV62 MYH4 "Myosin-4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-12
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-06
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 5e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 7e-05
pfam09726680 pfam09726, Macoilin, Transmembrane protein 9e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-04
PRK11448 1123 PRK11448, hsdR, type I restriction enzyme EcoKI su 0.001
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
TIGR03007498 TIGR03007, pepcterm_ChnLen, polysaccharide chain l 0.002
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.003
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.003
pfam09726680 pfam09726, Macoilin, Transmembrane protein 0.003
PRK09039343 PRK09039, PRK09039, hypothetical protein; Validate 0.003
PRK05298652 PRK05298, PRK05298, excinuclease ABC subunit B; Pr 0.003
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 0.004
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 69/277 (24%), Positives = 128/277 (46%), Gaps = 11/277 (3%)

Query: 17  EEKNSILSSKLQVKEVES--ESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLS 74
           +  +SIL  + +++E+E   E L+ +I ELE+  +  LRK L+++  E +      E+LS
Sbjct: 667 KTNSSILERRREIEELEEKIEELEEKIAELEKA-LAELRKELEELEEELEQLRKELEELS 725

Query: 75  AQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLE 134
            Q+  L+K L   E E  + EE  A L  EL  L+ +           +  + + +   E
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE----ELEERLEEAEEELAEAE 781

Query: 135 KELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQELEEKLVMFSRKASEEVSNAA 194
            E+  L++Q++Q  +  +  R+ L E +A +++L  E   L E+L    R+ +       
Sbjct: 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA----TE 837

Query: 195 ASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQ 254
                  E  E+L + +  +A  +E LE   ++L  E++   +E   L E  + L S  +
Sbjct: 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897

Query: 255 ESMGIAKHWENQVKDCLKQNEELRGILEKLRTEQASF 291
           E     +  E++  +  ++ EELR  L +L       
Sbjct: 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 388
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.97
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.91
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.76
PF00038312 Filament: Intermediate filament protein; InterPro: 97.53
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.35
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.2
PF13514 1111 AAA_27: AAA domain 96.99
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.89
PF00038312 Filament: Intermediate filament protein; InterPro: 95.93
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 95.85
PRK11281 1113 hypothetical protein; Provisional 95.79
PF14662193 CCDC155: Coiled-coil region of CCDC155 95.33
PRK04863 1486 mukB cell division protein MukB; Provisional 95.29
PRK02224880 chromosome segregation protein; Provisional 95.24
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.22
PHA02562562 46 endonuclease subunit; Provisional 94.97
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 94.71
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 94.47
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 93.28
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 93.22
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 93.19
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 92.88
PRK11637428 AmiB activator; Provisional 92.84
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 92.81
PF13514 1111 AAA_27: AAA domain 92.74
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 92.46
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 92.11
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 92.08
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 91.79
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 91.41
PRK09039343 hypothetical protein; Validated 91.31
PRK11637428 AmiB activator; Provisional 90.99
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 90.98
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 90.95
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 90.65
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 90.45
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 90.1
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 90.1
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 88.79
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 88.53
COG4477570 EzrA Negative regulator of septation ring formatio 88.03
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 87.91
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 87.33
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 86.55
PRK09039343 hypothetical protein; Validated 86.34
KOG4807593 consensus F-actin binding protein, regulates actin 86.27
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 86.09
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 83.07
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 80.18
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
Probab=97.97  E-value=0.04  Score=58.86  Aligned_cols=73  Identities=23%  Similarity=0.191  Sum_probs=29.3

Q ss_pred             HHHHHhHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047021          207 LEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQNEELRG  279 (388)
Q Consensus       207 le~Ql~dma~~VeRLE~SRqKLL~EID~QS~EIErLf~ENs~Lsss~qea~~iaaqWEnQvqDclkQNeeLr~  279 (388)
                      ++..+.++..-+..++.....+-.+++.-..++..+..+-..+...+.....--..++.++.++-.+...+..
T Consensus       864 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~  936 (1179)
T TIGR02168       864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV  936 (1179)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333344444444444444333343333333333333333333334444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 2e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 42/340 (12%), Positives = 125/340 (36%), Gaps = 23/340 (6%)

Query: 5    QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKD 64
            +++   ++    +E+     ++L+  E +   L    N L Q  + +  +   +    + 
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL-QEKLQAETELYAEAEEMRV 916

Query: 65   AAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMG 124
                 +++L   L  ++ R++E EE   + + +   ++ ++  L++Q  +          
Sbjct: 917  RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA------- 969

Query: 125  ISPDHVQTLEKELATLKSQLQQ----------ESQLRQQERKQLTEEQARISVLMSEKQE 174
                  Q L+ E  T   ++++          ++    +ERK L E  + ++  ++E++E
Sbjct: 970  ----ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025

Query: 175  LEEKLVMFSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDN 234
              + L     K    +S          + +++LEK    +      L     +L  +I  
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 235  QSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQNEELRGILEKLRTEQASFMSV 294
              +++ +  EE  +  +  ++      +   ++++      +L+  LE  +  +      
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145

Query: 295  NDKDILRDFSEPSKDAVSQNGSETHKNEFLALKGQLAKEQ 334
              +D+  +      +      +   + E      +   ++
Sbjct: 1146 K-RDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.67
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.62
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.3
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.66
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.36
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.64
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.32
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 92.57
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 91.67
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 90.89
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 90.34
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 86.19
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 84.12
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 81.56
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 80.42
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.67  E-value=0.019  Score=48.17  Aligned_cols=73  Identities=10%  Similarity=0.054  Sum_probs=27.4

Q ss_pred             HHHHHhHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047021          207 LEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQNEELRG  279 (388)
Q Consensus       207 le~Ql~dma~~VeRLE~SRqKLL~EID~QS~EIErLf~ENs~Lsss~qea~~iaaqWEnQvqDclkQNeeLr~  279 (388)
                      +..++..+...+..++.....+-.+|+.-..+|+.+...-..+...+.....--..++.++.++-.....++.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  251 (284)
T 1c1g_A          179 AEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  251 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333344444333333333333333333333333333333333333333333444333333333333
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00